Citrus Sinensis ID: 046889

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MAAETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRTLTEEESWRSAEGKRRVCLERCSLTT
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccEEEEEEccHHHHHHccccEEEcccccHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccEEEEEccHHHHccHHHccccccccccEEEEEEccHHHHHHccccEEEEEcccHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MAAETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVqrwpdkvdeiIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALIAAgnfgkdvsrpapppaiisLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGicgrggigkTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAgwlgikelpdndELVRASLLCKRIEKQRVLVILDDLWVqieldrvgipygndgckfLLTSRSRAACNQMQAHIVDVRTLTEEESWRSAEGKRRVCLERCSLTT
Flexible Loop (DISEMBL)
maaetvasvtqpitekiVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIdaatrngeaikdevqrwpdkvDEIIPTAekfledevkvnktclgglcvdlKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGicgrggigktTLVKEIQKQAKEKKMFDEVAMAVvsqtpsitkiQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVdvrtlteeeswrsaegkrrvclercsltt
Low Complexity Region (SEG)
MAAETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSiigicgrggigKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRTLTEEESWRSAEGKRRVCLERCSLTT
Disordered region (IsUnstruct)
*********TQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKL********************IKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALIAAGNF**************************************DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRTLTE**********************
Disordered Region (DISOPRED)
MAAETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATR**EAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALIAA******************************STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGI***********ASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRTLTEEESWRSAEGKRRV*********
Disordered Region (DISEMBL)
*********TQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRTL*************RVCLERCSLTT
Disordered Region (DISPRO)
MAAETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPP**********YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRTLTEEESWRSAEGKRR**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRTLTEEESWRSAEGKRRVCLERCSLTT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
O22727	967	Probable disease resistan	yes	no	0.840	0.289	0.288	3e-25
O64789	925	Probable disease resistan	no	no	0.888	0.32	0.269	4e-24
P60838	894	Probable disease resistan	no	no	0.894	0.333	0.273	8e-24
Q940K0	889	Probable disease resistan	no	no	0.888	0.332	0.266	5e-23
Q9FLB4	874	Putative disease resistan	no	no	0.804	0.306	0.269	5e-23
Q8RXS5	888	Probable disease resistan	no	no	0.816	0.306	0.282	7e-23
Q8L3R3	885	Disease resistance protei	no	no	0.816	0.307	0.275	4e-21
O82484	892	Putative disease resistan	no	no	0.846	0.316	0.282	6e-21
O64973	889	Disease resistance protei	no	no	0.870	0.326	0.292	3e-20
Q9LVT3	948	Probable disease resistan	no	no	0.831	0.292	0.285	3e-20

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 159/309 (51%), Gaps = 29/309 (9%)

Query: 30  GYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAE 89
           GY+   +  + AL+ E + L  T++++Q ++       +   + VQ W D+V+ I    +
Sbjct: 26  GYIRNLEKNLRALQREMEDLRATQHEVQNKVAREESRHQQRLEAVQVWLDRVNSIDIECK 85

Query: 90  KFLE-DEVKVNKTCLGGLCVD-LKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAP-- 145
             L    V++ K CL GLC   + S YK  +     +  ++ L + GNF  +VS+P P  
Sbjct: 86  DLLSVSPVELQKLCLCGLCSKYVCSSYKYGKRVFLLLEEVTKLKSEGNFD-EVSQPPPRS 144

Query: 146 -------PPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEI 198
                   P I            +E  +K     + ++ V I+G+ G GG+GKTTL K+I
Sbjct: 145 EVEERPTQPTI-----------GQEEMLKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKI 193

Query: 199 Q-KQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE--LPDNDELVRASLLCKRIE 255
             K A+    FD V   VVSQ   ++K+Q++IA  L + +    + +E  +A+ + + ++
Sbjct: 194 HNKFAETGGTFDIVIWIVVSQGAKLSKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLK 253

Query: 256 KQRVLVILDDLWVQIELDRVGIPYGN--DGCKFLLTSRSRAACNQMQAH-IVDVRTLTEE 312
            +R +++LDD+W +++L+ +GIPY +  + CK   T+R +  C QM  H  + V+ L  E
Sbjct: 254 GKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRDQKVCGQMGDHKPMQVKCLEPE 313

Query: 313 ESWRSAEGK 321
           ++W   + K
Sbjct: 314 DAWELFKNK 322

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 167/326 (51%), Gaps = 30/326 (9%)

Query: 13  ITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKD 72
           + ++ ++ +F+  + +  Y+   +  + AL+ E + L  T++++Q ++       +   +
Sbjct: 11  VGDQTMNRIFDCLIGK-SYIRTLEKNLRALQREMEDLRATQHEVQNKVAREESRHQQRLE 69

Query: 73  EVQRWPDKVDEIIPTAEKFLE-DEVKVNKTCLGGLCVD-LKSRYKLSREAEEKILAISAL 130
            VQ W D+V+ I    +  L    V++ K CL GLC   + S YK  ++    +  +  L
Sbjct: 70  AVQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCTKYVCSSYKYGKKVFLLLEEVKIL 129

Query: 131 IAAGNFGKDVSRPAP---------PPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSII 181
            + GNF  +VS+P P          P I            +E  ++     + ++ V I+
Sbjct: 130 KSEGNF-DEVSQPPPRSEVEERPTQPTI-----------GQEEMLEKAWNRLMEDGVGIM 177

Query: 182 GICGRGGIGKTTLVKEIQKQAKE-KKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE--L 238
           G+ G GG+GKTTL K+I  +  E    FD V   VVSQ   ++K+Q++IA  L + +   
Sbjct: 178 GLHGMGGVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSQGAKLSKLQEDIAEKLHLCDDLW 237

Query: 239 PDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGN--DGCKFLLTSRSRAAC 296
            + +E  +A+ + + ++ +R +++LDD+W +++L+ +GIPY +  + CK   T+RSR  C
Sbjct: 238 KNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVC 297

Query: 297 NQMQAH-IVDVRTLTEEESWRSAEGK 321
            +M  H  + V  L  E++W   + K
Sbjct: 298 GEMGDHKPMQVNCLEPEDAWELFKNK 323

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  111 bits (277), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 158/311 (50%), Gaps = 13/311 (4%)

Query: 15  EKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAA--TRNGEAIKD 72
           +++V+ +        GY+C+    + A++ + + L   R+D++  +D    TR  E +  
Sbjct: 12  DEVVNQISQGLCINVGYICELSKNVVAMKKDMEVLKKKRDDVKRRVDIEEFTRRRERL-S 70

Query: 73  EVQRWPDKVDEIIPTAEKFLE-DEVKVNKTCLGGLCV-DLKSRYKLSREAEEKILAISAL 130
           +VQ W   V  +     + L  ++ ++ + CL G C  ++K  Y   +     +  I +L
Sbjct: 71  QVQGWLTNVSTVENKFNELLTTNDAELQRLCLFGFCSKNVKMSYLYGKRVVLMLKEIESL 130

Query: 131 IAAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIG 190
            + G+F  D    A P A I           +E+ ++ +   + ++   I+G+ G GG+G
Sbjct: 131 SSQGDF--DTVTLATPIARIEEMPIQPTIVGQETMLERVWTRLTEDGDEIVGLYGMGGVG 188

Query: 191 KTTLVKEIQKQAKEK-KMFDEVAMAVVSQTPSITKIQDEIAGWL--GIKELPDNDELVRA 247
           KTTL+  I  +  EK   F  V   VVS++P I +IQ +I   L  G +E  + +E  RA
Sbjct: 189 KTTLLTRINNKFSEKCSGFGVVIWVVVSKSPDIHRIQGDIGKRLDLGGEEWDNVNENQRA 248

Query: 248 SLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGN--DGCKFLLTSRSRAACNQMQA-HIV 304
             +   + KQ+ +++LDD+W ++ L+ +G+PY +  +GCK + T+RSR  C +M+    +
Sbjct: 249 LDIYNVLGKQKFVLLLDDIWEKVNLEVLGVPYPSRQNGCKVVFTTRSRDVCGRMRVDDPM 308

Query: 305 DVRTLTEEESW 315
           +V  L   E+W
Sbjct: 309 EVSCLEPNEAW 319

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 167/326 (51%), Gaps = 30/326 (9%)

Query: 13  ITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKD 72
           ++++ ++ +FN  + +  Y+   +  + AL+ E + L   ++++Q ++       +   +
Sbjct: 9   VSDQTLNRIFNCLIGK-SYIRTLEKNLRALQREMEDLRAIQHEVQNKVARDEARHQRRLE 67

Query: 73  EVQRWPDKVDEIIPTAEKFLE-DEVKVNKTCLGGLCVD-LKSRYKLSREAEEKILAISAL 130
            VQ W D+V+ +    +  L    V++ K CL GLC   + S YK  ++    +  +  L
Sbjct: 68  AVQVWLDRVNSVDIECKDLLSVTPVELQKLCLCGLCSKYVCSSYKYGKKVFLLLEEVKKL 127

Query: 131 IAAGNFGKDVSRPAP---------PPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSII 181
            + GNF  +VS+P P          P I            +E  ++     + ++ V I+
Sbjct: 128 NSEGNF-DEVSQPPPRSEVEERPTQPTI-----------GQEDMLEKAWNRLMEDGVGIM 175

Query: 182 GICGRGGIGKTTLVKEIQKQAKE-KKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE--L 238
           G+ G GG+GKTTL K+I  +  E    FD V   VVS+   I+K+Q++IA  L + +   
Sbjct: 176 GLHGMGGVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAEKLHLCDDLW 235

Query: 239 PDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGN--DGCKFLLTSRSRAAC 296
            + +E  +A+ + + ++ +R +++LDD+W +++L+ +GIPY +  + CK   T+RSR  C
Sbjct: 236 KNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVC 295

Query: 297 NQMQAH-IVDVRTLTEEESWRSAEGK 321
            +M  H  + V  L  E++W   + K
Sbjct: 296 GEMGDHKPMQVNCLEPEDAWELFKNK 321

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 147/293 (50%), Gaps = 25/293 (8%)

Query: 38  YIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEKFL-EDEV 96
           ++ AL+   ++L   R+DL   I      G  + DEVQ+W  +V+  +  A   L + + 
Sbjct: 35  HVAALKKTVRQLEARRDDLLKRIKVQEDRGLNLLDEVQQWLSEVESRVCEAHDILSQSDE 94

Query: 97  KVNKTCLGGLCVD-LKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLSEG 155
           +++  C G  C    K  Y  S+    K+  +  L++ G F  +V++  P P +    E 
Sbjct: 95  EIDNLCCGQYCSKRCKYSYDYSKSVINKLQDVENLLSKGVF-DEVAQKGPIPKV---EER 150

Query: 156 FYN--FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE-KKMFDEVA 212
            ++     +E+ ++    +M +  V ++GI G GG+GKTTL+ +I  + +     FD   
Sbjct: 151 LFHQEIVGQEAIVESTWNSMMEVGVGLLGIYGMGGVGKTTLLSQINNKFRTVSNDFDIAI 210

Query: 213 MAVVSQTPSITKIQDEIA--------GWLGIKELPDNDELVRASLLCKRIEKQRVLVILD 264
             VVS+ P++ +IQ++I         GW    E    +E+  AS + + +E ++ +++LD
Sbjct: 211 WVVVSKNPTVKRIQEDIGKRLDLYNEGW----EQKTENEI--ASTIKRSLENKKYMLLLD 264

Query: 265 DLWVQIELDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHI-VDVRTLTEEESW 315
           D+W +++L  +GIP    +G K   TSRS   C +M     ++V  L  +++W
Sbjct: 265 DMWTKVDLANIGIPVPKRNGSKIAFTSRSNEVCGKMGVDKEIEVTCLMWDDAW 317

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  108 bits (269), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 153/311 (49%), Gaps = 39/311 (12%)

Query: 27  RQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIP 86
           R   Y+   +  + AL+   +++   R DL  +I +  R G      VQ W  KV+ I+P
Sbjct: 24  RNGDYIHGLEENLTALQRALEQIEQRREDLLRKILSEERRGLQRLSVVQGWVSKVEAIVP 83

Query: 87  TAEKFLE-DEVKVNKTCLGGLCV-DLKSRYKLSREAEEKILAISALIAAGNFG------- 137
              + +    V+V + CL G C  +L S Y+  +   + I  +  L   G+F        
Sbjct: 84  RVNELVRMRSVQVQRLCLCGFCSKNLVSSYRYGKRVMKMIEEVEVLRYQGDFAVVAERVD 143

Query: 138 --KDVSRPA-PPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTL 194
             +   RP  P  A+  + E  +N              M+DE + I+G+ G GG+GKTTL
Sbjct: 144 AARVEERPTRPMVAMDPMLESAWN------------RLMEDE-IGILGLHGMGGVGKTTL 190

Query: 195 VKEIQKQ-AKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDND------ELVRA 247
           +  I  + ++    FD V   VVS+   I +IQDEI  W  ++   DN+      E ++A
Sbjct: 191 LSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQDEI--WEKLRS--DNEKWKQKTEDIKA 246

Query: 248 SLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGN--DGCKFLLTSRSRAACNQMQAHI-V 304
           S +   ++ +R +++LDD+W +++L  VG+P+ +  +GCK + T+R +  C +M     +
Sbjct: 247 SNIYNVLKHKRFVLLLDDIWSKVDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVDSDM 306

Query: 305 DVRTLTEEESW 315
           +VR L  +++W
Sbjct: 307 EVRCLAPDDAW 317

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 18/290 (6%)

Query: 26  VRQFG-YLCKYKHYIE-------ALRTEAKKLTDTRNDLQAEIDAATRNGEAIK-DEVQR 76
           V QF  +LC    YI+       +L+     L   R+D+Q  I+     G   +  +VQ 
Sbjct: 15  VNQFSQWLCVSGSYIQNLSENLASLQKAMGVLNAKRDDVQGRINREEFTGHRRRLAQVQV 74

Query: 77  WPDKVDEIIPTAEKFLED-EVKVNKTCLGGLCV-DLKSRYKLSREAEEKILAISALIAAG 134
           W  ++  I       L     ++ + CL G C  ++K  Y   +     +  +  L + G
Sbjct: 75  WLTRIQTIENQFNDLLSTCNAEIQRLCLCGFCSKNVKMSYLYGKRVIVLLREVEGLSSQG 134

Query: 135 NFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTL 194
            F  D+   A P A +           ++S +  +   + ++KV I+G+ G GG+GKTTL
Sbjct: 135 VF--DIVTEAAPIAEVEELPIQSTIVGQDSMLDKVWNCLMEDKVWIVGLYGMGGVGKTTL 192

Query: 195 VKEI-QKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGI--KELPDNDELVRASLLC 251
           + +I  K +K    FD V   VVS+  ++ KIQ  I   LG+  K   + ++  RA  + 
Sbjct: 193 LTQINNKFSKLGGGFDVVIWVVVSKNATVHKIQKSIGEKLGLVGKNWDEKNKNQRALDIH 252

Query: 252 KRIEKQRVLVILDDLWVQIELDRVGIPY--GNDGCKFLLTSRSRAACNQM 299
             + +++ +++LDD+W ++EL  +G+PY  G +GCK   T+ S+  C +M
Sbjct: 253 NVLRRKKFVLLLDDIWEKVELKVIGVPYPSGENGCKVAFTTHSKEVCGRM 302

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  101 bits (252), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 12/294 (4%)

Query: 30  GYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAE 89
            Y+ K K  I AL    + LT TR+D+   +      G     +VQ W  +V+ I     
Sbjct: 27  NYIHKLKDNIVALEKAIEDLTATRDDVLRRVQMEEGKGLERLQQVQVWLKRVEIIRNQFY 86

Query: 90  KFLED-EVKVNKTCLGGLC-VDLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPP 147
             L    +++ + C    C  +L S Y   +     I  +  L + G F + V+ PAP  
Sbjct: 87  DLLSARNIEIQRLCFYSNCSTNLSSSYTYGQRVFLMIKEVENLNSNG-FFEIVAAPAPKL 145

Query: 148 AIISLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE-KK 206
            +  +         RE+  +     + D+ V  +G+ G GG+GKTTL+ +I     + K 
Sbjct: 146 EMRPIQP---TIMGRETIFQRAWNRLMDDGVGTMGLYGMGGVGKTTLLTQIHNTLHDTKN 202

Query: 207 MFDEVAMAVVSQTPSITKIQDEIAGWLGI--KELPDNDELVRASLLCKRIEKQRVLVILD 264
             D V   VVS    I KIQ++I   LG   KE     E  +A  +   + K+R +++LD
Sbjct: 203 GVDIVIWVVVSSDLQIHKIQEDIGEKLGFIGKEWNKKQESQKAVDILNCLSKKRFVLLLD 262

Query: 265 DLWVQIELDRVGIPYGN--DGCKFLLTSRSRAACNQMQAH-IVDVRTLTEEESW 315
           D+W +++L ++GIP     + CK + T+RS   C +M  H  ++V+ L+  ++W
Sbjct: 263 DIWKKVDLTKIGIPSQTRENKCKVVFTTRSLDVCARMGVHDPMEVQCLSTNDAW 316

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 144/311 (46%), Gaps = 21/311 (6%)

Query: 23  NATVRQFG-YLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIK--------DE 73
           +  V QF   LC    YI  L      L      L+A      R  E  +         +
Sbjct: 12  DQVVSQFSQLLCVRGSYIHNLSKNLASLQKAMRMLKARQYDVIRRLETEEFTGRQQRLSQ 71

Query: 74  VQRWPDKVDEIIPTAEKFL-EDEVKVNKTCLGGLCV-DLKSRYKLSREAEEKILAISALI 131
           VQ W   V  I       L  +EV++ + CL G C  DLK  Y+  +     +  + +L 
Sbjct: 72  VQVWLTSVLIIQNQFNDLLRSNEVELQRLCLCGFCSKDLKLSYRYGKRVIMMLKEVESLS 131

Query: 132 AAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGK 191
           + G F  DV   A P A +           +E  ++     + ++   I+G+ G GG+GK
Sbjct: 132 SQGFF--DVVSEATPFADVDEIPFQPTIVGQEIMLEKAWNRLMEDGSGILGLYGMGGVGK 189

Query: 192 TTLVKEIQ-KQAKEKKMFDEVAMAVVSQTPSITKIQDEIA---GWLGIKELPDNDELVRA 247
           TTL+ +I  K +K    FD V   VVS++ ++ KIQ +IA   G  G++    ND  + A
Sbjct: 190 TTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWSEKNDNQI-A 248

Query: 248 SLLCKRIEKQRVLVILDDLWVQIELDRVGIPY--GNDGCKFLLTSRSRAACNQMQA-HIV 304
             +   + +++ +++LDD+W ++ L  VG+PY   ++GCK   T+RSR  C +M     +
Sbjct: 249 VDIHNVLRRRKFVLLLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPM 308

Query: 305 DVRTLTEEESW 315
           +V  L  EESW
Sbjct: 309 EVSCLQPEESW 319

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 144/294 (48%), Gaps = 17/294 (5%)

Query: 31  YLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEK 90
           YL   +  +EAL    + L   RNDL   +      G     EV+ W   V+EI P A +
Sbjct: 22  YLYNLERNLEALHKVMQDLNAMRNDLLKRLSKEEEIGLQGLQEVKEWISMVEEIEPKANR 81

Query: 91  FLEDEV-KVNKTCLGGLCVDLK-SRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPA 148
            L++ V ++ +    G C  +  S Y+ S +    +  +  L + G F   V R A PP 
Sbjct: 82  LLDESVSEIQRLSRYGYCSLIPASTYRYSEKVLTTMEGVETLRSKGVFEAVVHR-ALPPL 140

Query: 149 IISLSEGFYNFKSRESTMKDIMEA-MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM 207
           +I +          ++ + D   A + D  V  +GI GRGG+GKTTL+ ++    + K +
Sbjct: 141 VIKMPP--IQLTVSQAKLLDTAWARLMDINVGTLGIYGRGGVGKTTLLTKL----RNKLL 194

Query: 208 FDEVAMA--VVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDD 265
            D   +   VV     +  IQDEI   LG++   +  E   A +L    EK R +++LD 
Sbjct: 195 VDAFGLVIFVVVGFEEVESIQDEIGKRLGLQWRRETKERKAAEILAVLKEK-RFVLLLDG 253

Query: 266 LWVQIELDRVGIPYG--NDGCKFLLTSRSRAACNQMQA--HIVDVRTLTEEESW 315
           +  +++L+ +G+P+   ++GCK + T++S  AC++ +     V++  L+ EE+W
Sbjct: 254 IQRELDLEEIGVPFPSRDNGCKIVFTTQSLEACDESKWVDAKVEITCLSPEEAW 307

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
359488027	1520	PREDICTED: disease resistance protein At	0.900	0.197	0.418	3e-58
147802546	1409	hypothetical protein VITISV_007222 [Viti	0.900	0.212	0.415	5e-58
359488103	1530	PREDICTED: disease resistance protein At	0.912	0.198	0.420	2e-56
147866716	454	hypothetical protein VITISV_025268 [Viti	0.909	0.667	0.424	4e-55
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.912	0.179	0.416	5e-55
359488095	1347	PREDICTED: probable disease resistance p	0.912	0.225	0.420	8e-55
359488101	1677	PREDICTED: disease resistance protein At	0.912	0.181	0.416	3e-54
302143655	1224	unnamed protein product [Vitis vinifera]	0.912	0.248	0.416	4e-54
224121164	1144	cc-nbs-lrr resistance protein [Populus t	0.909	0.264	0.406	4e-54
147777048	1460	hypothetical protein VITISV_009359 [Viti	0.912	0.208	0.413	5e-53

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 129/308 (41%), Positives = 199/308 (64%), Gaps = 8/308 (2%)

Query: 13  ITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKD 72
           I  K+ + L     R FGYL  Y+  I+ LR + +KL D R  L+  +D A RNG+ I+ 
Sbjct: 8   IAAKVAEYLVAPIGRSFGYLFNYRSNIDDLRQQVEKLGDARARLERSVDEAIRNGDEIEA 67

Query: 73  EVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALIA 132
           +V +W  +V   +  A  F E E K N++C  G C +LKS+Y+LSREA+++   ++ +  
Sbjct: 68  DVDKWLLRVSGFMEEAGIFFEVEKKANQSCFNGSCPNLKSQYQLSREAKKRARVVAEIQG 127

Query: 133 AGNFGKDVSRPAPPPAIISLS-EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGK 191
            G F + VS  AP P I S   +G    +SR +T+ +IMEA++D  V+IIG+ G  G+GK
Sbjct: 128 DGKFER-VSYRAPLPGIGSAPFKGHEALESRMTTLDEIMEALRDAHVNIIGVWGMAGVGK 186

Query: 192 TTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLC 251
           TTL+K++ KQA+E+K+FD+V MA +S TP + KIQ E+A  LG+K   +  E+ RA+ LC
Sbjct: 187 TTLMKQVAKQAEEEKLFDKVVMAYISSTPELKKIQGELADMLGLK-FEEESEMGRAARLC 245

Query: 252 KRIEK-QRVLVILDDLWVQIELDRVGIPYGND--GCKFLLTSRSRA-ACNQMQAHI-VDV 306
           +R++K +++L+ILDD+W +++L++VGIP+G+D  GCK +LTSR++    N+M       V
Sbjct: 246 ERLKKVKKILIILDDIWTELDLEKVGIPFGDDHKGCKMVLTSRNKHILSNEMGTQKDFPV 305

Query: 307 RTLTEEES 314
             L EEE+
Sbjct: 306 EHLQEEEA 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802546|emb|CAN77665.1| hypothetical protein VITISV_007222 [Vitis vinifera]

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 128/308 (41%), Positives = 198/308 (64%), Gaps = 8/308 (2%)

Query: 13  ITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKD 72
           I  K+ + L     R FGYL  Y+  I+ LR + +KL D R  L+  +D A RNG+ I+ 
Sbjct: 8   IAAKVAEYLVAPIGRSFGYLFNYRSNIDDLRQQVEKLGDARARLERSVDEAIRNGDEIEA 67

Query: 73  EVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALIA 132
           +V +W  +V   +  A  F E E K N++C  G C +LKS+Y+LSREA+++   ++ +  
Sbjct: 68  DVDKWLLRVSGFMEEAGIFFEVEKKANQSCFNGSCPNLKSQYQLSREAKKRARVVAEIQG 127

Query: 133 AGNFGKDVSRPAPPPAIISLS-EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGK 191
            G F + VS  AP P I S   +G    +SR +T+ +IMEA++D  V+IIG+ G  G+GK
Sbjct: 128 DGKFER-VSYRAPLPGIGSAPFKGHEALESRMTTLDEIMEALRDAHVNIIGVWGMAGVGK 186

Query: 192 TTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLC 251
           TTL+K++ KQ +E+K+FD+V MA +S TP + KIQ E+A  LG+K   +  E+ RA+ LC
Sbjct: 187 TTLMKQVAKQVEEEKLFDKVVMAYISSTPELKKIQGELADMLGLK-FEEESEMGRAARLC 245

Query: 252 KRIEK-QRVLVILDDLWVQIELDRVGIPYGND--GCKFLLTSRSRAA-CNQMQAHI-VDV 306
           +R++K +++L+ILDD+W +++L++VGIP+G+D  GCK +LTSR++    N+M       V
Sbjct: 246 ERLKKVKKILIILDDIWTELDLEKVGIPFGDDHKGCKMVLTSRNKHVLSNEMGTQKDFPV 305

Query: 307 RTLTEEES 314
             L EEE+
Sbjct: 306 EHLQEEEA 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488103|ref|XP_002263579.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/319 (42%), Positives = 196/319 (61%), Gaps = 15/319 (4%)

Query: 3   AETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDA 62
            E V SV   ++E +VD      VRQ GYL  Y+  IE L  + +KL D R  LQ  +D 
Sbjct: 2   VEIVLSVAAKVSEYLVD----PAVRQLGYLFNYRANIEELSQQVQKLRDARARLQHSVDE 57

Query: 63  ATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEE 122
           A  NG  I+D+V +W  + D  I  A KFLEDE +  K+C  GLC +LKSRY+LSREA +
Sbjct: 58  AIGNGLIIEDDVCKWMKRADGFIQNACKFLEDEKEARKSCFNGLCPNLKSRYQLSREASK 117

Query: 123 KILAISALIAAGNFGKDVSRPAPPPAI-ISLSEGFYNFKSRESTMKDIMEAMKDEKVSII 181
           K      ++  G F K V+  AP   I    SE     +SR  T+ ++MEA++D  ++ I
Sbjct: 118 KAGVSVQILGDGQFEK-VAYRAPLQGIRCRPSEAL---ESRMLTLNEVMEALRDANINRI 173

Query: 182 GICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN 241
           G+ G GG+GK+TLVK++ +QA ++K+F++V    V QTP + +IQ E+A WLG+K   + 
Sbjct: 174 GVWGMGGVGKSTLVKQVAEQANQEKLFEKVVNVSVLQTPDLERIQRELADWLGMK-FEEE 232

Query: 242 DELVRASLLCKRIEKQR-VLVILDDLWVQIELDRVGIPYGND--GCKFLLTSRSRAA-CN 297
            E  RA+ L +R++ ++ +L+ILDDLW ++EL++VGIP  +D  GCK +LTSR++    N
Sbjct: 233 SEQGRAARLHQRMKAEKTILIILDDLWAELELEKVGIPSPDDHKGCKLVLTSRNKQVLSN 292

Query: 298 QMQAHI-VDVRTLTEEESW 315
           +M       VR L E+E+W
Sbjct: 293 EMSTQKDFRVRHLQEDETW 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866716|emb|CAN80506.1| hypothetical protein VITISV_025268 [Vitis vinifera]

 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 135/318 (42%), Positives = 192/318 (60%), Gaps = 15/318 (4%)

Query: 4   ETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAA 63
           E V SV   ++E +VD      VRQ GYL  Y+  IE L  + +KL D R  LQ  +D A
Sbjct: 3   EIVVSVAAKVSEYLVD----PAVRQLGYLFNYRANIEHLSLQVEKLRDARARLQHSVDEA 58

Query: 64  TRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEK 123
             NG  IKD+V +W  + DE I  A KFLEDE +  K+C  GLC +LKSRY+LSREA +K
Sbjct: 59  IGNGHIIKDDVCKWMKRADEFIQNACKFLEDEKEARKSCFNGLCPNLKSRYQLSREARKK 118

Query: 124 ILAISALIAAGNFGKDVSRPAPPPAIISL-SEGFYNFKSRESTMKDIMEAMKDEKVSIIG 182
                 ++    F K VS  AP   I S  SE     +SR  T+ ++MEA++D  ++ IG
Sbjct: 119 AGVAVQILGDRQFEK-VSYRAPLQEIRSAPSEA---LQSRMLTLNEVMEALRDADINRIG 174

Query: 183 ICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDND 242
           + G GG+GK+TLVK++ + A+++K+F +V M  V QTP    IQ +IA  LG+K   +  
Sbjct: 175 VWGLGGVGKSTLVKQVAELAEQEKLFRKVVMVPVFQTPDFKGIQQQIADKLGMK-FEEVS 233

Query: 243 ELVRASLLCKRIEKQR-VLVILDDLWVQIELDRVGIPYGND--GCKFLLTSRSRAACNQM 299
           E  RA  L +RI+++  +L+ILDDLW ++EL++VGIP  +D  GCK +LTSR++   +  
Sbjct: 234 EQGRADRLHQRIKQENTILIILDDLWAELELEKVGIPSPDDHKGCKLVLTSRNKQVLSNE 293

Query: 300 QAHIVDVRT--LTEEESW 315
            +   D R   L E+E+W
Sbjct: 294 MSTQKDFRVQHLQEDETW 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/319 (41%), Positives = 194/319 (60%), Gaps = 15/319 (4%)

Query: 3   AETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDA 62
            E V SV   ++E +VD      +RQ GYL  Y+  IE L  + +KL D R  LQ  +D 
Sbjct: 2   VEIVLSVAAKVSEYLVD----PAIRQLGYLFNYRANIEDLSQQVEKLRDARARLQHSVDE 57

Query: 63  ATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEE 122
           A  NG  I+D+V++W  + D  I  A KFLEDE +  K+C  GLC +LKSRY+LSREA +
Sbjct: 58  AIGNGHIIEDDVRKWMKRADGFIQNACKFLEDEKEARKSCFNGLCPNLKSRYQLSREARK 117

Query: 123 KILAISALIAAGNFGKDVSRPAPPPAI-ISLSEGFYNFKSRESTMKDIMEAMKDEKVSII 181
           K      +  AG F + VS  AP   I  + SE     +SR  T+ ++MEA++D  ++ I
Sbjct: 118 KAGVAVEIHGAGQFER-VSYRAPLQEIRTAPSEA---LESRMLTLNEVMEALRDANINRI 173

Query: 182 GICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN 241
           G+ G GG+GK+TLVK++ +QA+++K+F +V M  V QTP    IQ +IA  LG+K   + 
Sbjct: 174 GVWGMGGVGKSTLVKQVAEQAEQEKLFRKVVMVPVIQTPDFKGIQQQIADKLGMK-FEEV 232

Query: 242 DELVRASLLCKRIEKQR-VLVILDDLWVQIELDRVGIPYGND--GCKFLLTSRSRAACNQ 298
            E  RA  L +RI+++  +L+ILDDLW ++EL++VGIP  +D  GCK +LTSR++   + 
Sbjct: 233 SEQGRADRLHQRIKQENTILIILDDLWAELELEKVGIPSPDDHKGCKLVLTSRNKQVLSN 292

Query: 299 MQAHIVDVRT--LTEEESW 315
             +   D R   L E+E+W
Sbjct: 293 EMSTQKDFRVQHLQEDETW 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488095|ref|XP_002270726.2| PREDICTED: probable disease resistance protein At4g27220-like [Vitis vinifera]

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 134/319 (42%), Positives = 192/319 (60%), Gaps = 15/319 (4%)

Query: 3   AETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDA 62
            E V SV   ++E +VD      VRQ GYL  Y+  IE L  + +KL D R  LQ  +D 
Sbjct: 2   VEIVVSVAAKVSEYLVD----PAVRQLGYLFNYRANIEHLSLQVEKLRDARARLQHSVDE 57

Query: 63  ATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEE 122
           A  NG  I+D+  +W  + DE I  A KFLEDE +  K+C  GLC +LKSRY+LSREA +
Sbjct: 58  AIGNGHIIEDDACKWMKRADEFIQNACKFLEDEKEARKSCFNGLCPNLKSRYQLSREARK 117

Query: 123 KILAISALIAAGNFGKDVSRPAPPPAIISL-SEGFYNFKSRESTMKDIMEAMKDEKVSII 181
           K   +S  I      + VS  AP   I S  SE     +SR  T+ ++MEA++D  ++ I
Sbjct: 118 KA-GVSVQILGDRQFEKVSYRAPLQEIRSAPSEA---LQSRMLTLNEVMEALRDANINRI 173

Query: 182 GICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN 241
           G+ G GG+GK+TLVK++ +QA+++K+F +V M  V QTP    IQ +IA  LG+K   + 
Sbjct: 174 GVWGLGGVGKSTLVKQVAEQAEQEKLFRKVVMVPVFQTPDFKGIQQQIADKLGMK-FEEV 232

Query: 242 DELVRASLLCKRIEKQR-VLVILDDLWVQIELDRVGIPYGND--GCKFLLTSRSRAACNQ 298
            E  RA  L +RI+++  +L+ILDDLW ++EL++VGIP  +D  GCK +LTSR++   + 
Sbjct: 233 SEQGRADRLHQRIKQENTILIILDDLWAELELEKVGIPSPDDHKGCKLVLTSRNKQVLSN 292

Query: 299 MQAHIVDVRT--LTEEESW 315
             +   D R   L E+E+W
Sbjct: 293 EMSTQKDFRVQHLQEDETW 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 133/319 (41%), Positives = 192/319 (60%), Gaps = 15/319 (4%)

Query: 3   AETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDA 62
            E V SV   ++E +VD    + VRQ GYL  Y+  IE L  + +KL D R   Q  +D 
Sbjct: 2   VEIVVSVAAKVSEYLVD----SVVRQLGYLSNYRTNIEDLSQKVEKLRDARARQQHSVDE 57

Query: 63  ATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEE 122
           A RNG  I+D+V  W  + D  I    KFLEDE +  K+C  GLC +LKSRY+LSREA +
Sbjct: 58  AIRNGHKIEDDVCNWMTRADGFIQNVCKFLEDEKEARKSCFKGLCPNLKSRYQLSREARK 117

Query: 123 KILAISALIAAGNFGKDVSRPAPPPAIISL-SEGFYNFKSRESTMKDIMEAMKDEKVSII 181
           K      +   G F + VS  AP   I S  SE     +SR  T+ ++MEA++D K++ I
Sbjct: 118 KAGVAVQIHGDGQFER-VSYRAPQQEIRSAPSEAL---RSRVLTLDEVMEALRDAKINKI 173

Query: 182 GICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN 241
           G+ G GG+GKTTLVK++ +QA ++K+FD+V  A V QTP + KIQ E+A  LG+K   + 
Sbjct: 174 GVWGLGGVGKTTLVKQVAEQAAQEKLFDKVVKAAVLQTPDLKKIQGELADLLGMK-FEEE 232

Query: 242 DELVRASLLCKRI-EKQRVLVILDDLWVQIELDRVGIPY--GNDGCKFLLTSRSRAACNQ 298
            E  RA+ L +R+ E++ +L+ILDD+W +++L+++GIP    + GCK +LTSR+    + 
Sbjct: 233 SEQGRAARLYQRMNEEKTILIILDDIWAKLDLEKIGIPSPDHHKGCKLVLTSRNEHILSS 292

Query: 299 MQAHIVDVRT--LTEEESW 315
                 D R   L E+E+W
Sbjct: 293 EMDTQKDFRVQPLQEDETW 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143655|emb|CBI22408.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 133/319 (41%), Positives = 192/319 (60%), Gaps = 15/319 (4%)

Query: 3   AETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDA 62
            E V SV   ++E +VD    + VRQ GYL  Y+  IE L  + +KL D R   Q  +D 
Sbjct: 2   VEIVVSVAAKVSEYLVD----SVVRQLGYLSNYRTNIEDLSQKVEKLRDARARQQHSVDE 57

Query: 63  ATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEE 122
           A RNG  I+D+V  W  + D  I    KFLEDE +  K+C  GLC +LKSRY+LSREA +
Sbjct: 58  AIRNGHKIEDDVCNWMTRADGFIQNVCKFLEDEKEARKSCFKGLCPNLKSRYQLSREARK 117

Query: 123 KILAISALIAAGNFGKDVSRPAPPPAIISL-SEGFYNFKSRESTMKDIMEAMKDEKVSII 181
           K      +   G F + VS  AP   I S  SE     +SR  T+ ++MEA++D K++ I
Sbjct: 118 KAGVAVQIHGDGQFER-VSYRAPQQEIRSAPSEAL---RSRVLTLDEVMEALRDAKINKI 173

Query: 182 GICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN 241
           G+ G GG+GKTTLVK++ +QA ++K+FD+V  A V QTP + KIQ E+A  LG+K   + 
Sbjct: 174 GVWGLGGVGKTTLVKQVAEQAAQEKLFDKVVKAAVLQTPDLKKIQGELADLLGMK-FEEE 232

Query: 242 DELVRASLLCKRI-EKQRVLVILDDLWVQIELDRVGIPY--GNDGCKFLLTSRSRAACNQ 298
            E  RA+ L +R+ E++ +L+ILDD+W +++L+++GIP    + GCK +LTSR+    + 
Sbjct: 233 SEQGRAARLYQRMNEEKTILIILDDIWAKLDLEKIGIPSPDHHKGCKLVLTSRNEHILSS 292

Query: 299 MQAHIVDVRT--LTEEESW 315
                 D R   L E+E+W
Sbjct: 293 EMDTQKDFRVQPLQEDETW 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121164|ref|XP_002330759.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222872561|gb|EEF09692.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 135/332 (40%), Positives = 192/332 (57%), Gaps = 29/332 (8%)

Query: 1   MAAETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEI 60
           MA + V SV   I E +V+       R+F YL  Y   +E L+ + + L + R D+Q  +
Sbjct: 1   MAVDIVISVIGKIGEFMVE----PIGRKFEYLIHYNSNMETLKDQVQLLEEVRKDVQGSV 56

Query: 61  DAATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREA 120
           DAA   GE IK+EV+ W  +VD +I  A K LED+   NK       +DL SRY+LSRE+
Sbjct: 57  DAAIAKGETIKNEVRNWMSRVDGVILEARKILEDDAVPNKRWF----LDLASRYRLSRES 112

Query: 121 EEKILAISALIAAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSI 180
           E KI AI+ +   G F  +VS PA PP I+S  + F  F+S    + +IMEA++   +S 
Sbjct: 113 ENKITAIAKIKVDGQF-DNVSMPAAPPEIVS--QDFVIFESTRLAIMEIMEALEGNIISF 169

Query: 181 IGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPD 240
           IGI G  G+GKTTLVKEI+++AKE  +FD V MAVVS+T  +  IQ +IA  LG K   +
Sbjct: 170 IGIYGMAGVGKTTLVKEIERRAKEDMLFDAVVMAVVSRTVEVKNIQQQIADMLGFK-FDE 228

Query: 241 NDELVRASLLCKRIEK-QRVLVILDDLWVQIELDRVGIPYGND--------GC---KFLL 288
             E  RA  L  R++   ++L+ILDD+W  ++L  +GIP+G+D         C   K ++
Sbjct: 229 KREQGRAGRLHARLKNVDKILIILDDIWDTLDLAAIGIPFGDDDHQDPENVNCKVRKIVV 288

Query: 289 TSRSRAACNQM-----QAHIVDVRTLTEEESW 315
           T+R R  CN M      + I+ +  L+E ESW
Sbjct: 289 TTRCRLVCNSMTTGIETSKIIHLNALSENESW 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777048|emb|CAN65562.1| hypothetical protein VITISV_009359 [Vitis vinifera]

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 132/319 (41%), Positives = 192/319 (60%), Gaps = 15/319 (4%)

Query: 3   AETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDA 62
            E V SV   ++E +VD      VRQ G+L  Y+  IE L  + +KL D R  LQ  +D 
Sbjct: 2   VEIVVSVAAKVSEYLVD----PAVRQLGHLFNYRANIEHLSLQVEKLRDARARLQHSVDE 57

Query: 63  ATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEE 122
           A  NG  I+D+V +W  + DE    A KFLEDE +  K+C  GLC +LKSRY+LSREA +
Sbjct: 58  AIGNGHIIEDDVCKWMKRADEFTQNACKFLEDEKEARKSCFNGLCPNLKSRYQLSREARK 117

Query: 123 KILAISALIAAGNFGKDVSRPAPPPAIISL-SEGFYNFKSRESTMKDIMEAMKDEKVSII 181
           K      ++    F K VS  AP   I S  SE     +SR  T+ ++MEA++D  ++ I
Sbjct: 118 KAGVAVQILGDRQFEK-VSYRAPLQEIRSAPSEA---LQSRMLTLNEVMEALRDADINRI 173

Query: 182 GICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN 241
           G+ G GG+GK+TLVK + +QA+++++F +V  A V QTP   +IQ +IA  LG+K   + 
Sbjct: 174 GVWGLGGVGKSTLVKRVAEQAEQEELFHKVVTASVFQTPDYKEIQQQIAEKLGMK-FEEV 232

Query: 242 DELVRASLLCKRIEKQR-VLVILDDLWVQIELDRVGIPYGND--GCKFLLTSRSRAACNQ 298
            E  RA  L +RI+++  +L+ILDDLW ++EL++VGIP  +D  GCK +LTSR++   + 
Sbjct: 233 SEQGRAGRLHQRIKQENTILIILDDLWAELELEKVGIPSPDDHKGCKLVLTSRNKQVLSN 292

Query: 299 MQAHIVDVRT--LTEEESW 315
             +   D R   L E+E+W
Sbjct: 293 EMSTQKDFRVQHLQEDETW 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.867	0.298	0.28	2.2e-23
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.915	0.339	0.261	3.7e-22
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.894	0.333	0.254	1.6e-21
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.816	0.311	0.249	1.8e-20
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.846	0.317	0.249	1.7e-19
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.861	0.321	0.264	4.8e-18
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.879	0.297	0.242	5.5e-18
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.840	0.330	0.255	3.1e-17
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.852	0.333	0.254	7.1e-17
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.837	0.294	0.267	2.4e-16

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 2.2e-23, P = 2.2e-23
 Identities = 84/300 (28%), Positives = 152/300 (50%)

Query:    30 GYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAE 89
             GY+   +  + AL+ E + L  T++++Q ++       +   + VQ W D+V+ I    +
Sbjct:    26 GYIRNLEKNLRALQREMEDLRATQHEVQNKVAREESRHQQRLEAVQVWLDRVNSIDIECK 85

Query:    90 KFLE-DEVKVNKTCLGGLCVD-LKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPP 147
               L    V++ K CL GLC   + S YK  +     +  ++ L + GNF  +VS+P PP 
Sbjct:    86 DLLSVSPVELQKLCLCGLCSKYVCSSYKYGKRVFLLLEEVTKLKSEGNFD-EVSQP-PPR 143

Query:   148 AIISLSEGFYNFKSRESTMKDIMEAMKDEKVSXXXXXXXXXXXKTTLVKEIQ-KQAKEKK 206
             + +           +E  +K     + ++ V            KTTL K+I  K A+   
Sbjct:   144 SEVE-ERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAETGG 202

Query:   207 MFDEVAMAVVSQTPSITKIQDEIAGWLGI-KELPDN-DELVRASLLCKRIEKQRVLVILD 264
              FD V   VVSQ   ++K+Q++IA  L +  +L  N +E  +A+ + + ++ +R +++LD
Sbjct:   203 TFDIVIWIVVSQGAKLSKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLD 262

Query:   265 DLWVQIELDRVGIPYGND--GCKFLLTSRSRAACNQMQAHI-VDVRTLTEEESWRSAEGK 321
             D+W +++L+ +GIPY ++   CK   T+R +  C QM  H  + V+ L  E++W   + K
Sbjct:   263 DIWEKVDLEAIGIPYPSEVNKCKVAFTTRDQKVCGQMGDHKPMQVKCLEPEDAWELFKNK 322

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 3.7e-22, P = 3.7e-22
 Identities = 83/317 (26%), Positives = 161/317 (50%)

Query:    13 ITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKD 72
             ++++ ++ +FN  + +  Y+   +  + AL+ E + L   ++++Q ++       +   +
Sbjct:     9 VSDQTLNRIFNCLIGK-SYIRTLEKNLRALQREMEDLRAIQHEVQNKVARDEARHQRRLE 67

Query:    73 EVQRWPDKVDEIIPTAEKFLE-DEVKVNKTCLGGLCVD-LKSRYKLSREAEEKILAISAL 130
              VQ W D+V+ +    +  L    V++ K CL GLC   + S YK  ++    +  +  L
Sbjct:    68 AVQVWLDRVNSVDIECKDLLSVTPVELQKLCLCGLCSKYVCSSYKYGKKVFLLLEEVKKL 127

Query:   131 IAAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSXXXXXXXXXXX 190
              + GNF  +VS+P PP + +           +E  ++     + ++ V            
Sbjct:   128 NSEGNFD-EVSQP-PPRSEVE-ERPTQPTIGQEDMLEKAWNRLMEDGVGIMGLHGMGGVG 184

Query:   191 KTTLVKEIQ-KQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGI-KELPDN-DELVRA 247
             KTTL K+I  K A+    FD V   VVS+   I+K+Q++IA  L +  +L  N +E  +A
Sbjct:   185 KTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAEKLHLCDDLWKNKNESDKA 244

Query:   248 SLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGND--GCKFLLTSRSRAACNQMQAHI-V 304
             + + + ++ +R +++LDD+W +++L+ +GIPY ++   CK   T+RSR  C +M  H  +
Sbjct:   245 TDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSEVNKCKVAFTTRSREVCGEMGDHKPM 304

Query:   305 DVRTLTEEESWRSAEGK 321
              V  L  E++W   + K
Sbjct:   305 QVNCLEPEDAWELFKNK 321

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 79/311 (25%), Positives = 149/311 (47%)

Query:    15 EKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAA--TRNGEAIKD 72
             +++V+ +        GY+C+    + A++ + + L   R+D++  +D    TR  E +  
Sbjct:    12 DEVVNQISQGLCINVGYICELSKNVVAMKKDMEVLKKKRDDVKRRVDIEEFTRRRERLS- 70

Query:    73 EVQRWPDKVDEIIPTAEKFLE-DEVKVNKTCLGGLCV-DLKSRYKLSREAEEKILAISAL 130
             +VQ W   V  +     + L  ++ ++ + CL G C  ++K  Y   +     +  I +L
Sbjct:    71 QVQGWLTNVSTVENKFNELLTTNDAELQRLCLFGFCSKNVKMSYLYGKRVVLMLKEIESL 130

Query:   131 IAAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSXXXXXXXXXXX 190
              + G+F  D    A P A I           +E+ ++ +   + ++              
Sbjct:   131 SSQGDF--DTVTLATPIARIEEMPIQPTIVGQETMLERVWTRLTEDGDEIVGLYGMGGVG 188

Query:   191 KTTLVKEIQKQAKEK-KMFDEVAMAVVSQTPSITKIQDEIAGWL--GIKELPDNDELVRA 247
             KTTL+  I  +  EK   F  V   VVS++P I +IQ +I   L  G +E  + +E  RA
Sbjct:   189 KTTLLTRINNKFSEKCSGFGVVIWVVVSKSPDIHRIQGDIGKRLDLGGEEWDNVNENQRA 248

Query:   248 SLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGN--DGCKFLLTSRSRAACNQMQAHI-V 304
               +   + KQ+ +++LDD+W ++ L+ +G+PY +  +GCK + T+RSR  C +M+    +
Sbjct:   249 LDIYNVLGKQKFVLLLDDIWEKVNLEVLGVPYPSRQNGCKVVFTTRSRDVCGRMRVDDPM 308

Query:   305 DVRTLTEEESW 315
             +V  L   E+W
Sbjct:   309 EVSCLEPNEAW 319

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 72/289 (24%), Positives = 139/289 (48%)

Query:    38 YIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEKFL-EDEV 96
             ++ AL+   ++L   R+DL   I      G  + DEVQ+W  +V+  +  A   L + + 
Sbjct:    35 HVAALKKTVRQLEARRDDLLKRIKVQEDRGLNLLDEVQQWLSEVESRVCEAHDILSQSDE 94

Query:    97 KVNKTCLGGLCVD-LKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLSEG 155
             +++  C G  C    K  Y  S+    K+  +  L++ G F  +V++  P P +    E 
Sbjct:    95 EIDNLCCGQYCSKRCKYSYDYSKSVINKLQDVENLLSKGVFD-EVAQKGPIPKV---EER 150

Query:   156 FYNFK--SRESTMKDIMEAMKDEKVSXXXXXXXXXXXKTTLVKEIQKQAKE-KKMFDEVA 212
              ++ +   +E+ ++    +M +  V            KTTL+ +I  + +     FD   
Sbjct:   151 LFHQEIVGQEAIVESTWNSMMEVGVGLLGIYGMGGVGKTTLLSQINNKFRTVSNDFDIAI 210

Query:   213 MAVVSQTPSITKIQDEIAGWLGIK----ELPDNDELVRASLLCKRIEKQRVLVILDDLWV 268
               VVS+ P++ +IQ++I   L +     E    +E+  AS + + +E ++ +++LDD+W 
Sbjct:   211 WVVVSKNPTVKRIQEDIGKRLDLYNEGWEQKTENEI--ASTIKRSLENKKYMLLLDDMWT 268

Query:   269 QIELDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHI-VDVRTLTEEESW 315
             +++L  +GIP    +G K   TSRS   C +M     ++V  L  +++W
Sbjct:   269 KVDLANIGIPVPKRNGSKIAFTSRSNEVCGKMGVDKEIEVTCLMWDDAW 317

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 75/301 (24%), Positives = 141/301 (46%)

Query:    27 RQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIP 86
             R   Y+   +  + AL+   +++   R DL  +I +  R G      VQ W  KV+ I+P
Sbjct:    24 RNGDYIHGLEENLTALQRALEQIEQRREDLLRKILSEERRGLQRLSVVQGWVSKVEAIVP 83

Query:    87 TAEKFLE-DEVKVNKTCLGGLCV-DLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPA 144
                + +    V+V + CL G C  +L S Y+  +   + I  +  L   G+F     R  
Sbjct:    84 RVNELVRMRSVQVQRLCLCGFCSKNLVSSYRYGKRVMKMIEEVEVLRYQGDFAVVAERV- 142

Query:   145 PPPAIISLSEGFYNFKSRESTMKDIMEAMKDEKVSXXXXXXXXXXXKTTLVKEIQKQ-AK 203
                A +          + +  ++     + ++++            KTTL+  I  + ++
Sbjct:   143 -DAARVE-ERPTRPMVAMDPMLESAWNRLMEDEIGILGLHGMGGVGKTTLLSHINNRFSR 200

Query:   204 EKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQ 257
                 FD V   VVS+   I +IQDEI  W  ++   DN+      E ++AS +   ++ +
Sbjct:   201 VGGEFDIVIWIVVSKELQIQRIQDEI--WEKLRS--DNEKWKQKTEDIKASNIYNVLKHK 256

Query:   258 RVLVILDDLWVQIELDRVGIPYGN--DGCKFLLTSRSRAACNQMQAHI-VDVRTLTEEES 314
             R +++LDD+W +++L  VG+P+ +  +GCK + T+R +  C +M     ++VR L  +++
Sbjct:   257 RFVLLLDDIWSKVDLTEVGVPFPSRENGCKIVFTTRLKEICGRMGVDSDMEVRCLAPDDA 316

Query:   315 W 315
             W
Sbjct:   317 W 317

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 4.8e-18, P = 4.8e-18
 Identities = 79/299 (26%), Positives = 132/299 (44%)

Query:    31 YLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEK 90
             Y+ K K  I AL    + LT TR+D+   +      G     +VQ W  +V+ I      
Sbjct:    28 YIHKLKDNIVALEKAIEDLTATRDDVLRRVQMEEGKGLERLQQVQVWLKRVEIIRNQFYD 87

Query:    91 FLEDE-VKVNKTCLGGLC-VDLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPA 148
              L    +++ + C    C  +L S Y   +     I  +  L + G F + V+ PAP   
Sbjct:    88 LLSARNIEIQRLCFYSNCSTNLSSSYTYGQRVFLMIKEVENLNSNGFF-EIVAAPAPKLE 146

Query:   149 IISLSEGFYNFKSRESTMKDIMEAMKDEKVSXXXXXXXXXXXKTTLVKEIQKQAKEKKM- 207
             +  +         RE+  +     + D+ V            KTTL+ +I     + K  
Sbjct:   147 MRPIQP---TIMGRETIFQRAWNRLMDDGVGTMGLYGMGGVGKTTLLTQIHNTLHDTKNG 203

Query:   208 FDEVAMAVVSQTPSITKIQDEIAGWLGI--KELPDNDELVRASLLCKRIEKQRVLVILDD 265
              D V   VVS    I KIQ++I   LG   KE     E  +A  +   + K+R +++LDD
Sbjct:   204 VDIVIWVVVSSDLQIHKIQEDIGEKLGFIGKEWNKKQESQKAVDILNCLSKKRFVLLLDD 263

Query:   266 LWVQIELDRVGIPYGN--DGCKFLLTSRSRAACNQMQAHI-VDVRTLTEEESWRSAEGK 321
             +W +++L ++GIP     + CK + T+RS   C +M  H  ++V+ L+  ++W   + K
Sbjct:   264 IWKKVDLTKIGIPSQTRENKCKVVFTTRSLDVCARMGVHDPMEVQCLSTNDAWELFQEK 322

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 5.5e-18, P = 5.5e-18
 Identities = 76/314 (24%), Positives = 153/314 (48%)

Query:    12 PITEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIK 71
             P+  +I+ +++ +T  +     K+K  ++AL    ++LT+ + ++  + +      + ++
Sbjct:     6 PVIGEILRLMYESTFSRVANAIKFKSNVKALNESLERLTELKGNMSEDHETLLTKDKPLR 65

Query:    72 DEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALI 131
              ++ RW  + +E+I  A   LE+ V    +C  G+ +    R ++SR+  + +  +  L 
Sbjct:    66 LKLMRWQREAEEVISKARLKLEERV----SC--GMSL----RPRMSRKLVKILDEVKMLE 115

Query:   132 AAG-NFGKDVSRPAPPPAIISLSEGFYNFKSRESTM-KDIMEAMKDEKVSXXXXXXXXXX 189
               G  F   +S  + P  +  +       ++  S M   I + +  EK            
Sbjct:   116 KDGIEFVDMLSVESTPERVEHVPGVSVVHQTMASNMLAKIRDGLTSEKAQKIGVWGMGGV 175

Query:   190 XKTTLVKEIQKQAKEK---KMFDEVAMAVVSQTPSITKIQDEIAGWLGIK-ELPDNDELV 245
              KTTLV+ +  + +E+   + F  V   +VS+     ++Q +IA  L I  ++ +++E +
Sbjct:   176 GKTTLVRTLNNKLREEGATQPFGLVIFVIVSKEFDPREVQKQIAERLDIDTQMEESEEKL 235

Query:   246 RASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYG--NDGCKFLLTSRSRAACNQMQAHI 303
                +    +++++ L+ILDD+W  I+LD +GIP    N G K +LTSR    C  M+  +
Sbjct:   236 ARRIYVGLMKERKFLLILDDVWKPIDLDLLGIPRTEENKGSKVILTSRFLEVCRSMKTDL 295

Query:   304 VDVRT--LTEEESW 315
              DVR   L EE++W
Sbjct:   296 -DVRVDCLLEEDAW 308

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 3.1e-17, P = 3.1e-17
 Identities = 75/293 (25%), Positives = 140/293 (47%)

Query:    31 YLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEK 90
             Y+   +  ++AL+   ++L + R+DL A +      G      V  W  +V  +    + 
Sbjct:    27 YIHLMESNLDALQKTMEELKNGRDDLLARVSIEEDKGLQRLALVNGWLSRVQIVESEFKD 86

Query:    91 FLED-EVKVNKTCLGGLCV-DLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPA 148
              LE   ++  + CL G C  D  S Y    +  + +  +  L++  NF + V++   P A
Sbjct:    87 LLEAMSIETGRLCLFGYCSEDCISSYNYGGKVMKNLEEVKELLSKKNF-EVVAQKIIPKA 145

Query:   149 IISLSEGFYNFKSRESTMKDIM-EAMKDEKVSXXXXXXXXXXXKTTLVKEIQKQAKE-KK 206
                  +          TM  I  E++ D+++            KTTL++ +  +  E + 
Sbjct:   146 ----EKKHIQTTVGLDTMVGIAWESLIDDEIRTLGLYGMGGIGKTTLLESLNNKFVELES 201

Query:   207 MFDEVAMAVVSQTPSITKIQDEIAGWLGI-KELPDNDELVRASLLCKRIEKQRVLVILDD 265
              FD V   VVS+   +  IQD+I G L   KE     E  +ASL+   +++++ +++LDD
Sbjct:   202 EFDVVIWVVVSKDFQLEGIQDQILGRLRPDKEWERETESKKASLINNNLKRKKFVLLLDD 261

Query:   266 LWVQIELDRVGIPYGN--DGCKFLLTSRSRAACNQMQAHI-VDVRTLTEEESW 315
             LW +++L ++G+P  +  +G K + T+RS+  C  M+A   + V  L+ +E+W
Sbjct:   262 LWSEVDLIKIGVPPPSRENGSKIVFTTRSKEVCKHMKADKQIKVDCLSPDEAW 314

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 77/302 (25%), Positives = 136/302 (45%)

Query:    31 YLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEK 90
             Y+ K +  +EAL+   ++L + R+DL   +      G     +VQ W  +V ++      
Sbjct:    28 YILKMEANLEALQNTMQELEERRDDLLRRVVIEEDKGLQRLAQVQGWLSRVKDVCSQVND 87

Query:    91 FLEDE-VKVNKTCLGGLCV-DLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPA 148
              L+ + ++  + CL G C  +  S         +K+  +  L+A G F + V+   P P 
Sbjct:    88 LLKAKSIQTERLCLCGYCSKNFISGRNYGINVLKKLKHVEGLLAKGVF-EVVAEKIPAPK 146

Query:   149 I----ISLSEGFYNFKSRESTMKDIMEAMKDEKVSXXXXXXXXXXXKTTLVKEIQKQAKE 204
             +    I  + G      R          MKDE+             KTTL+  I  +  E
Sbjct:   147 VEKKHIQTTVGLDAMVGRAWN-----SLMKDER-RTLGLYGMGGVGKTTLLASINNKFLE 200

Query:   205 -KKMFDEVAMAVVSQTPSITKIQDEIAGWLGI-KELPDNDELVRASLLCKRIEKQRVLVI 262
                 FD V   VVS+      IQ++I G LG+ +      E  +AS +C  +  ++ +++
Sbjct:   201 GMNGFDLVIWVVVSKDLQNEGIQEQILGRLGLHRGWKQVTEKEKASYICNILNVKKFVLL 260

Query:   263 LDDLWVQIELDRVGIP--YGNDGCKFLLTSRSRAACNQMQAH-IVDVRTLTEEESWRSAE 319
             LDDLW +++L+++G+P     +G K + T+RS+  C  M+    + V  L  +E+W   +
Sbjct:   261 LDDLWSEVDLEKIGVPPLTRENGSKIVFTTRSKDVCRDMEVDGEMKVDCLPPDEAWELFQ 320

Query:   320 GK 321
              K
Sbjct:   321 KK 322

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 78/292 (26%), Positives = 134/292 (45%)

Query:    31 YLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEK 90
             YL   +  +EAL    + L   RNDL   +      G     EV+ W   V+EI P A +
Sbjct:    22 YLYNLERNLEALHKVMQDLNAMRNDLLKRLSKEEEIGLQGLQEVKEWISMVEEIEPKANR 81

Query:    91 FLEDEV-KVNKTCLGGLCVDLK-SRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPA 148
              L++ V ++ +    G C  +  S Y+ S +    +  +  L + G F   V R A PP 
Sbjct:    82 LLDESVSEIQRLSRYGYCSLIPASTYRYSEKVLTTMEGVETLRSKGVFEAVVHR-ALPPL 140

Query:   149 IISLSEGFYNFKSRESTMKDIMEA-MKDEKVSXXXXXXXXXXXKTTLVKEIQKQAKEKKM 207
             +I +          ++ + D   A + D  V            KTTL+ +++ +      
Sbjct:   141 VIKMPP--IQLTVSQAKLLDTAWARLMDINVGTLGIYGRGGVGKTTLLTKLRNKLLVDA- 197

Query:   208 FDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLW 267
             F  V   VV     +  IQDEI   LG++   +  E   A +L    EK+ VL +LD + 
Sbjct:   198 FGLVIFVVVG-FEEVESIQDEIGKRLGLQWRRETKERKAAEILAVLKEKRFVL-LLDGIQ 255

Query:   268 VQIELDRVGIPYGN--DGCKFLLTSRSRAACNQMQ--AHIVDVRTLTEEESW 315
              +++L+ +G+P+ +  +GCK + T++S  AC++ +     V++  L+ EE+W
Sbjct:   256 RELDLEEIGVPFPSRDNGCKIVFTTQSLEACDESKWVDAKVEITCLSPEEAW 307

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_147000018 cc-nbs-lrr resistance protein (1144 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	333
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	7e-25

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  101 bits (253), Expect = 7e-25
 Identities = 50/161 (31%), Positives = 93/161 (57%), Gaps = 12/161 (7%)

Query: 167 KDIMEAMKD------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTP 220
           +D++EA+ +      + + ++GI G GG+GKTTL K+I         FD VA  VVS+T 
Sbjct: 2   EDMIEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTY 61

Query: 221 SITKIQDEIAGWLGI--KELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIP 278
           +  ++Q +I   LG+   +  + +E   A  + + + ++R L++LDD+W + + D++G+P
Sbjct: 62  TEFRLQKDILQELGLDDSDWVEKNESELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVP 121

Query: 279 Y--GNDGCKFLLTSRSRAACNQMQAH--IVDVRTLTEEESW 315
           +  G +G + ++T+RS +   +M       +V +L  EESW
Sbjct: 122 FPDGENGSRVIVTTRSESVAGRMGGTSKPHEVESLEPEESW 162

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.29
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.26
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.23
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.2
PF05729	166	NACHT: NACHT domain	99.18
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.17
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.16
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.14
COG0488	530	Uup ATPase components of ABC transporters with dup	99.13
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.13
COG0488	530	Uup ATPase components of ABC transporters with dup	99.1
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.09
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.09
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.06
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.05
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.04
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.03
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.98
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.97
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.96
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.95
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.95
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.95
PRK06893	229	DNA replication initiation factor; Validated	98.94
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.94
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.93
KOG2028	554	consensus ATPase related to the helicase subunit o	98.93
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.93
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.93
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.93
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.92
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.91
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.91
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.9
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.9
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.89
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.89
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.89
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.89
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.89
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.89
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.88
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.88
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.88
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.88
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.87
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.87
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.87
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.87
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.87
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.87
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.86
PRK13342	413	recombination factor protein RarA; Reviewed	98.86
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.86
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.85
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.85
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.85
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.85
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.84
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.84
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.83
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.83
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.82
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.82
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.82
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.82
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.82
cd03246	173	ABCC_Protease_Secretion This family represents the	98.81
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.81
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.81
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.81
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.81
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.8
PRK10908	222	cell division protein FtsE; Provisional	98.8
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.8
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.8
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.8
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.8
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.8
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.79
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.79
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.79
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.79
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.78
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.78
PRK10938	490	putative molybdenum transport ATP-binding protein	98.78
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.78
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.78
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.78
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.78
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.78
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.78
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.78
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.77
PF13173	128	AAA_14: AAA domain	98.77
cd01128	249	rho_factor Transcription termination factor rho is	98.77
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.77
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.77
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.77
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.77
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.76
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.76
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.76
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.76
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.76
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.76
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.76
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.75
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.75
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.75
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.75
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.75
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.75
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.74
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.74
COG4559	259	ABC-type hemin transport system, ATPase component	98.74
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.74
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.74
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.74
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.74
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.73
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.73
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.73
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.73
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.73
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.73
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.73
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.73
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.73
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.73
PRK04841	903	transcriptional regulator MalT; Provisional	98.72
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.72
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.72
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.72
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.72
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.72
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.72
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.72
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.72
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.72
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.72
KOG0062	582	consensus ATPase component of ABC transporters wit	98.71
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.71
PRK11147	635	ABC transporter ATPase component; Reviewed	98.71
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.71
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.71
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.71
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.71
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.71
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.71
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.71
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.7
PTZ00202	550	tuzin; Provisional	98.7
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.7
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.7
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.7
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.7
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.69
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.69
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.69
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.69
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.69
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.69
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.69
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.69
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.68
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.68
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.68
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.68
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.68
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.68
PRK13409	590	putative ATPase RIL; Provisional	98.68
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.68
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.68
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.67
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.67
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.67
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.67
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.67
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.67
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.67
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.67
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.67
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.66
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.66
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.65
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.65
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.65
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.65
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.65
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.64
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.64
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.64
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.64
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.64
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.64
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.64
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.64
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.64
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.64
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.63
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.63
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.63
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.63
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.63
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.62
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.62
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.62
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.62
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.62
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.62
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.62
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.62
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.62
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.61
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.61
COG1123	539	ATPase components of various ABC-type transport sy	98.61
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.61
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.6
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.6
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.6
PRK13341	725	recombination factor protein RarA/unknown domain f	98.6
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.6
PRK11147	635	ABC transporter ATPase component; Reviewed	98.6
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.6
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.6
COG4181	228	Predicted ABC-type transport system involved in ly	98.59
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.59
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.59
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.59
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.59
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.58
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.58
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.58
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.58
PRK12402	337	replication factor C small subunit 2; Reviewed	98.58
PLN03211	659	ABC transporter G-25; Provisional	98.58
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.58
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.57
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.57
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.57
COG1123	539	ATPase components of various ABC-type transport sy	98.57
PRK13409	590	putative ATPase RIL; Provisional	98.57
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.56
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.56
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.56
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.56
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.56
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.56
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.56
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.56
PLN03073	718	ABC transporter F family; Provisional	98.56
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.56
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.56
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.56
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.56
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.55
PLN03073	718	ABC transporter F family; Provisional	98.55
PRK09376	416	rho transcription termination factor Rho; Provisio	98.55
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.55
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.55
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.55
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.54
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.54
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.54
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.54
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.54
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.54
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.53
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.53
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.53
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.53
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.53
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.53
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.53
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.52
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.52
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.52
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.52
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.52
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.52
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.52
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.52
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.52
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.51
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.51
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.51
TIGR00767	415	rho transcription termination factor Rho. Members	98.51
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.51
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.51
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.5
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.5
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.5
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.5
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.49
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.49
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.49
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.49
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.49
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.49
PRK04195	482	replication factor C large subunit; Provisional	98.49
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.49
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.48
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.48
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.47
PLN03025	319	replication factor C subunit; Provisional	98.47
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.47
PRK08084	235	DNA replication initiation factor; Provisional	98.47
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.47
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.47
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.47
PRK08727	233	hypothetical protein; Validated	98.47
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.46
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.46
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.46
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.45
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.45
PRK09087	226	hypothetical protein; Validated	98.45
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.44
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.44
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.44
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.44
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.43
PRK10938	490	putative molybdenum transport ATP-binding protein	98.43
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.42
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.42
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.42
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.41
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.41
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.41
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.4
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.39
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.39
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.39
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.38
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.38
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.38
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.37
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.37
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.37
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.36
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.36
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.35
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.35
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.35
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.34
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.34
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.34
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.33
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.33
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.33
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.32
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.32
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.31
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.31
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.31
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.3
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.3
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.3
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.3
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.3
COG4172	534	ABC-type uncharacterized transport system, duplica	98.3
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.29
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.29
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.27
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.26
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.26
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.26
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.26
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.25
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.25
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.25
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.24
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.23
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.23
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.23
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.22
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.22
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.22
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.22
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.22
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.22
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.22
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.22
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.22
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.21
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.21
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.21
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.21
PHA02544	316	44 clamp loader, small subunit; Provisional	98.21
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.2
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.2
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.2
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.19
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.18
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.18
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.17
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.17
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.17
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.17
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.17
PRK05642	234	DNA replication initiation factor; Validated	98.16
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.16
smart00382	148	AAA ATPases associated with a variety of cellular	98.16
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.16
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.15
CHL00095	821	clpC Clp protease ATP binding subunit	98.15
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.15
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.15
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.13
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.13
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.13
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.13
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.12
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.12
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.12
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.12
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.12
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.11
COG4988	559	CydD ABC-type transport system involved in cytochr	98.1
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.1
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.1
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	98.09
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	98.08
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.08
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.07
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.07
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.06
PRK10865	857	protein disaggregation chaperone; Provisional	98.05
PRK12422	445	chromosomal replication initiation protein; Provis	98.05
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.05
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.05
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.04
COG4987	573	CydC ABC-type transport system involved in cytochr	98.04
PRK06620	214	hypothetical protein; Validated	98.03
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.03
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.03
PLN03140	1470	ABC transporter G family member; Provisional	98.03
CHL00181	287	cbbX CbbX; Provisional	98.03
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.03
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.02
COG4172	534	ABC-type uncharacterized transport system, duplica	98.02
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.02
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	98.01
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.01
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.0
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	98.0
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.99
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.98
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.98
COG3910	233	Predicted ATPase [General function prediction only	97.97
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.97
PTZ00243	1560	ABC transporter; Provisional	97.97
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.96
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.96
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	97.96
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.94
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.94
PLN03140	1470	ABC transporter G family member; Provisional	97.93
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	97.93
COG4674	249	Uncharacterized ABC-type transport system, ATPase	97.92
PRK08116	268	hypothetical protein; Validated	97.92
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	97.91
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.91
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.91
PLN03130	1622	ABC transporter C family member; Provisional	97.91
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.9
PLN03232	1495	ABC transporter C family member; Provisional	97.9
PF00004	132	AAA: ATPase family associated with various cellula	97.89
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.89
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	97.89
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	97.89
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.89
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.88
PRK08118	167	topology modulation protein; Reviewed	97.88
PRK00409	782	recombination and DNA strand exchange inhibitor pr	97.88
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	97.87
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	97.86
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.86
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.86
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	97.86
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	97.86
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.85
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	97.83
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.82
PRK13695	174	putative NTPase; Provisional	97.82
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	97.82
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.82
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	97.81
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	97.81
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.81
PRK12608	380	transcription termination factor Rho; Provisional	97.79

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-37  Score=304.64  Aligned_cols=299  Identities=28%  Similarity=0.452  Sum_probs=233.0

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHhhhHHHHHHHHHHHHHHHhh---
Q 046889           18 VDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEKFLED---   94 (333)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~vr~~a~~~ed~ld~---   94 (333)
                      ++++.+.+.+++..+.+.+.++..|+++|..|+.++.++++       ++ ........|...+++++|++||+++.   
T Consensus         9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a-------~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v   80 (889)
T KOG4658|consen    9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDA-------KR-DDLERRVNWEEDVGDLVYLAEDIIWLFLV   80 (889)
T ss_pred             hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------hc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566677888888888899999999988776666654       33 45677889999999999999999986   


Q ss_pred             ---HHh-----------hhhhhcCCCCC-ChhhhhHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcccccccc-ccc
Q 046889           95 ---EVK-----------VNKTCLGGLCV-DLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLSEG-FYN  158 (333)
Q Consensus        95 ---~~~-----------~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  158 (333)
                         ..+           .+.-|+.+++. +...-+.+++++-+..+.++.+.....+........+.+.....|.. ...
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  160 (889)
T KOG4658|consen   81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD  160 (889)
T ss_pred             HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence               000           01112212222 44555667777777777777776665555522111122222223321 122


Q ss_pred             ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-hhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 046889          159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-EKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE  237 (333)
Q Consensus       159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~  237 (333)
                       +|.+..++.+...|..++..+++|+||||+||||||+.++++.. ++.+|+..+||+||++++...+.++|+..++..+
T Consensus       161 -VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~  239 (889)
T KOG4658|consen  161 -VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD  239 (889)
T ss_pred             -ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence             99999999999999887778999999999999999999999988 9999999999999999999999999999998753


Q ss_pred             C--CCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCC--CcEEEEeeCChHHHhh-cccce-EecCCCCH
Q 046889          238 L--PDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGND--GCKFLLTSRSRAACNQ-MQAHI-VDVRTLTE  311 (333)
Q Consensus       238 ~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~--g~~vivTTr~~~v~~~-~~~~~-~~l~~L~~  311 (333)
                      .  ......+.+..|.+.|..+||+|||||+|+..+|+.+..|++..  ||+|++|||+..||.. ++... +++++|++
T Consensus       240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~  319 (889)
T KOG4658|consen  240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP  319 (889)
T ss_pred             cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence            2  33334688999999999999999999999999999998776544  8999999999999998 77655 99999999


Q ss_pred             HHHHHHHHhhcccC
Q 046889          312 EESWRSAEGKRRVC  325 (333)
Q Consensus       312 ~e~~~lf~~~a~~~  325 (333)
                      +|||.||++++|..
T Consensus       320 ~eaW~LF~~~v~~~  333 (889)
T KOG4658|consen  320 EEAWDLFQKKVGPN  333 (889)
T ss_pred             cccHHHHHHhhccc
Confidence            99999999999986

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.94  E-value=5.5e-26  Score=202.64  Aligned_cols=165  Identities=27%  Similarity=0.477  Sum_probs=135.2

Q ss_pred             hHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-
Q 046889          162 RESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL-  238 (333)
Q Consensus       162 r~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-  238 (333)
                      |+.++++|...|..  ++.++|+|+|++|+||||||..++++...+.+|+.++|+.++...+...+++.|+..++.... 
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~   80 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS   80 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence            67899999999987  788999999999999999999999887778999999999999988889999999999988622 


Q ss_pred             --CCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCC--CCCCcEEEEeeCChHHHhhccc--ceEecCCCCHH
Q 046889          239 --PDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPY--GNDGCKFLLTSRSRAACNQMQA--HIVDVRTLTEE  312 (333)
Q Consensus       239 --~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~--~~~g~~vivTTr~~~v~~~~~~--~~~~l~~L~~~  312 (333)
                        ...+.......+.+.|.++++||||||+|+...|..+..++  ...||+||||||+..++..+..  ..|++++|+++
T Consensus        81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~  160 (287)
T PF00931_consen   81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE  160 (287)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred             cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              45567889999999999999999999999999887774433  3348999999999999887764  44999999999


Q ss_pred             HHHHHHHhhcccCC
Q 046889          313 ESWRSAEGKRRVCL  326 (333)
Q Consensus       313 e~~~lf~~~a~~~~  326 (333)
                      |+++||++.++...
T Consensus       161 ea~~L~~~~~~~~~  174 (287)
T PF00931_consen  161 EALELFKKRAGRKE  174 (287)
T ss_dssp             HHHHHHHHHHTSHS
T ss_pred             cccccccccccccc
Confidence            99999999998655

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=99.83  E-value=1.6e-19  Score=187.69  Aligned_cols=166  Identities=19%  Similarity=0.259  Sum_probs=122.4

Q ss_pred             ccccccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEe---CCCC---------
Q 046889          155 GFYNFKSRESTMKDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVV---SQTP---------  220 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v---~~~~---------  220 (333)
                      ...+++|++..++.+..++.  .++.++|+|+||||+||||||+.+|+...  .+|+..+|+.-   +...         
T Consensus       182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~  259 (1153)
T PLN03210        182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD  259 (1153)
T ss_pred             ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence            34678999999999988774  45678999999999999999999999765  67888777631   1110         


Q ss_pred             --C-HHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCC--CCCcEEEEeeCChH
Q 046889          221 --S-ITKIQDEIAGWLGIK-ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYG--NDGCKFLLTSRSRA  294 (333)
Q Consensus       221 --~-~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~--~~g~~vivTTr~~~  294 (333)
                        . ...+.+.++..+-.. ......    ...+++.+.++++||||||+|+..+|+.+.....  ..|++||||||+..
T Consensus       260 ~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~  335 (1153)
T PLN03210        260 DYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH  335 (1153)
T ss_pred             ccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence              1 112333444333211 111111    2457788999999999999999988888754332  45999999999999


Q ss_pred             HHhhccc-ceEecCCCCHHHHHHHHHhhcccCC
Q 046889          295 ACNQMQA-HIVDVRTLTEEESWRSAEGKRRVCL  326 (333)
Q Consensus       295 v~~~~~~-~~~~l~~L~~~e~~~lf~~~a~~~~  326 (333)
                      ++..++. ..|+++.|+++++|+||+++||+..
T Consensus       336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~  368 (1153)
T PLN03210        336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN  368 (1153)
T ss_pred             HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC
Confidence            9877644 4499999999999999999999753

syringae 6; Provisional

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.29  E-value=3.4e-12  Score=109.33  Aligned_cols=161  Identities=20%  Similarity=0.303  Sum_probs=105.8

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCC----
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTP----  220 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~----  220 (333)
                      |+....++++...+..++  +++|+||||+|||||++.+.+-.++...   .+            .....+++|.+    
T Consensus        12 y~~~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~   89 (258)
T COG1120          12 YGGKPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF   89 (258)
T ss_pred             ECCeeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence            455567777777777788  9999999999999999999976653220   00            00111122211    


Q ss_pred             ----------------------C--HHHHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889          221 ----------------------S--ITKIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQI  270 (333)
Q Consensus       221 ----------------------~--~~~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~  270 (333)
                                            +  ........++.++...     ....+ .+.+...+++.|.++.-+|+||++.+..
T Consensus        90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L  169 (258)
T COG1120          90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL  169 (258)
T ss_pred             CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence                                  1  1234555677776642     23333 3445677999999999999999999876


Q ss_pred             hhhh------ccCCCC-CCCcEEEEeeCChHHHhhcccceEecC------------CCCHHHHHHHHHhhc
Q 046889          271 ELDR------VGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR------------TLTEEESWRSAEGKR  322 (333)
Q Consensus       271 ~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~------------~L~~~e~~~lf~~~a  322 (333)
                      |+..      +...+. ..|..||+++|+.+.|.+++++.+-|+            -++++--.+.|.-.+
T Consensus       170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv~~  240 (258)
T COG1120         170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDA  240 (258)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCCce
Confidence            5332      222223 448889999999999999988775443            366677777666543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.26  E-value=8.9e-12  Score=102.25  Aligned_cols=148  Identities=11%  Similarity=0.191  Sum_probs=105.1

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-------------------Ee
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-------------------VV  216 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-------------------~v  216 (333)
                      ....||....++.+...+..++  +++|+||+|+|||||.|++.....+++   ..+|+                   .|
T Consensus         8 l~K~fg~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~~~R~~vGmV   82 (240)
T COG1126           8 LSKSFGDKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDILKLRRKVGMV   82 (240)
T ss_pred             eeEEeCCeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHHHHHHhcCee
Confidence            3456787788888888888888  999999999999999999987655432   12222                   12


Q ss_pred             CCCCC-------------------------HHHHHHHHHHHhCCCCCCC------CCHHHHHHHHHHHHccCceEEEEeC
Q 046889          217 SQTPS-------------------------ITKIQDEIAGWLGIKELPD------NDELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       217 ~~~~~-------------------------~~~~~~~i~~~l~~~~~~~------~~~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                      .|.++                         ..+....++.++|+.+...      +..++++-.|.+.|.=++-++++|+
T Consensus        83 FQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE  162 (240)
T COG1126          83 FQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE  162 (240)
T ss_pred             cccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC
Confidence            23332                         2334556677777752221      2245667789999999999999999


Q ss_pred             CCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecCC
Q 046889          266 LWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRT  308 (333)
Q Consensus       266 v~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~~  308 (333)
                      +.+..|-      ......+...|-..|++||...+|..++++.+.++.
T Consensus       163 PTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~  211 (240)
T COG1126         163 PTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQ  211 (240)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeC
Confidence            9987552      222233455688999999999999999988865543

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.23  E-value=9.7e-12  Score=106.05  Aligned_cols=139  Identities=19%  Similarity=0.313  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CC--------eEEEEEeCCCCC----------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FD--------EVAMAVVSQTPS----------  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~--------~~~wv~v~~~~~----------  221 (333)
                      ..++++...+..+.  +++|+||||+|||||++.+.+..++...    |.        .....+++|...          
T Consensus        18 ~vl~~i~l~v~~G~--~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~   95 (254)
T COG1121          18 PVLEDISLSVEKGE--ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVK   95 (254)
T ss_pred             eeeeccEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHH
Confidence            57888888787887  9999999999999999999986543210    10        012334444220          


Q ss_pred             --------------------HHHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          222 --------------------ITKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       222 --------------------~~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                                          ..+.....++++++.+..     ..+ -+.++..|++.|.+++-||+||++....|    
T Consensus        96 d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~  175 (254)
T COG1121          96 DVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQ  175 (254)
T ss_pred             HHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHH
Confidence                                124455667777765322     223 34456679999999999999998876533    


Q ss_pred             --hhhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                        +..+.......|+.||++|||........+..+
T Consensus       176 ~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi  210 (254)
T COG1121         176 KEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVI  210 (254)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEE
Confidence              444434444459999999999998777766663

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.20  E-value=1.7e-09  Score=100.82  Aligned_cols=166  Identities=17%  Similarity=0.099  Sum_probs=113.2

Q ss_pred             ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGW  232 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~  232 (333)
                      ..++||+++++.|...+.+    +....+.|+|+.|+|||++++.+++........-..+++.+....+...++..++.+
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~  109 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ  109 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence            5689999999999888743    234568899999999999999999987654322345566666666778888899998


Q ss_pred             hCCC--CCCCCCHHHHHHHHHHHHcc--CceEEEEeCCCCch------hhhhccC-C--CCCCCcEEEEeeCChHHHh--
Q 046889          233 LGIK--ELPDNDELVRASLLCKRIEK--QRVLVILDDLWVQI------ELDRVGI-P--YGNDGCKFLLTSRSRAACN--  297 (333)
Q Consensus       233 l~~~--~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~------~~~~l~~-~--~~~~g~~vivTTr~~~v~~--  297 (333)
                      +...  .....+..+....+.+.+..  ++.+|||||++...      .+..+.. .  .......+|.++++..+..  
T Consensus       110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l  189 (394)
T PRK00411        110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYIL  189 (394)
T ss_pred             hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhc
Confidence            8652  12223456666777777764  45899999997642      2333211 1  1111334677777654432  


Q ss_pred             ------hcccceEecCCCCHHHHHHHHHhhc
Q 046889          298 ------QMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       298 ------~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                            .+....+.+.+++.++..+++..++
T Consensus       190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~  220 (394)
T PRK00411        190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRV  220 (394)
T ss_pred             CHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence                  2223348999999999999999876

>PF05729 NACHT: NACHT domain

Probab=99.18  E-value=4.7e-10  Score=91.26  Aligned_cols=136  Identities=24%  Similarity=0.284  Sum_probs=84.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCC----CeEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCCCHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMF----DEVAMAVVSQTPSIT---KIQDEIAGWLGIKELPDNDELVRASLLC  251 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~  251 (333)
                      +++.|+|++|+||||+++.++.........    ...+|..........   .+...+...+..   .......   .+.
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~---~~~   74 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPE---SIAPIEE---LLQ   74 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhcc---chhhhHH---HHH
Confidence            478999999999999999999887655433    345565555433322   233333333322   1111111   222


Q ss_pred             HH-HccCceEEEEeCCCCchh-------------hhhccCCC-CCCCcEEEEeeCChHH---Hhhcccc-eEecCCCCHH
Q 046889          252 KR-IEKQRVLVILDDLWVQIE-------------LDRVGIPY-GNDGCKFLLTSRSRAA---CNQMQAH-IVDVRTLTEE  312 (333)
Q Consensus       252 ~~-l~~k~~LlVlDdv~~~~~-------------~~~l~~~~-~~~g~~vivTTr~~~v---~~~~~~~-~~~l~~L~~~  312 (333)
                      .. ...++++||+|++.....             +..+ ++. ...+++++||+|....   ....... .+.+.+|+++
T Consensus        75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~  153 (166)
T PF05729_consen   75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQL-LPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE  153 (166)
T ss_pred             HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHH-hhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence            22 246889999998754321             1222 222 2348999999998776   3334444 3999999999


Q ss_pred             HHHHHHHhh
Q 046889          313 ESWRSAEGK  321 (333)
Q Consensus       313 e~~~lf~~~  321 (333)
                      +..+++.++
T Consensus       154 ~~~~~~~~~  162 (166)
T PF05729_consen  154 DIKQYLRKY  162 (166)
T ss_pred             HHHHHHHHH
Confidence            999999876

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.17  E-value=2.1e-09  Score=99.22  Aligned_cols=166  Identities=16%  Similarity=0.171  Sum_probs=109.7

Q ss_pred             ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-CC---CeEEEEEeCCCCCHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-MF---DEVAMAVVSQTPSITKIQDE  228 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f---~~~~wv~v~~~~~~~~~~~~  228 (333)
                      ..++||+.+++.|...+.+    +....+.|+||.|+|||++++.+++...... ..   -..+|+.+....+...++..
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~   94 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE   94 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence            4689999999999988864    3345789999999999999999998764321 11   13456666666677788889


Q ss_pred             HHHHh---CCC-CCCCCCHHHHHHHHHHHHc--cCceEEEEeCCCCch----h-hhhcc-C--C--CCCCCcEEEEeeCC
Q 046889          229 IAGWL---GIK-ELPDNDELVRASLLCKRIE--KQRVLVILDDLWVQI----E-LDRVG-I--P--YGNDGCKFLLTSRS  292 (333)
Q Consensus       229 i~~~l---~~~-~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~-~~~l~-~--~--~~~~g~~vivTTr~  292 (333)
                      |+.++   +.. +....+..+....+.+.+.  +++++||||+++...    + +..+. .  .  ..+....+|.+|+.
T Consensus        95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~  174 (365)
T TIGR02928        95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND  174 (365)
T ss_pred             HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence            99888   332 1122244555566666664  467899999987551    1 22221 1  1  11123456667765


Q ss_pred             hHHHh--------hcccceEecCCCCHHHHHHHHHhhc
Q 046889          293 RAACN--------QMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       293 ~~v~~--------~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      .....        .+....+.+++++.++..+++.+++
T Consensus       175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~  212 (365)
T TIGR02928       175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA  212 (365)
T ss_pred             cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence            54322        2222348899999999999999876

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.16  E-value=1.4e-10  Score=93.22  Aligned_cols=139  Identities=17%  Similarity=0.265  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE---------------------EeCCCC-
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA---------------------VVSQTP-  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv---------------------~v~~~~-  220 (333)
                      .+.++++...+..++  .+.|+||+|+|||||.+.+|...++..   ..+|+                     .|.|++ 
T Consensus        15 ~~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r   89 (223)
T COG2884          15 REALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR   89 (223)
T ss_pred             chhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeecccccccccchhhheeeeEeeecc
Confidence            557777888787788  899999999999999999998887542   11121                     122222 


Q ss_pred             -----------------------CHHHHHHHHHHHhCCCC------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCch-
Q 046889          221 -----------------------SITKIQDEIAGWLGIKE------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQI-  270 (333)
Q Consensus       221 -----------------------~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-  270 (333)
                                             ....-....++..|+..      ..-+..+++...|.+.+-+++-+|+-|++.-.. 
T Consensus        90 LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLD  169 (223)
T COG2884          90 LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD  169 (223)
T ss_pred             ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCC
Confidence                                   11223344555556541      122235667788999999999999999886432 


Q ss_pred             ---hhh--hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          271 ---ELD--RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       271 ---~~~--~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         .|.  .+...++..|+.||++||+..+.+.+....+.+
T Consensus       170 p~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l  210 (223)
T COG2884         170 PDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLAL  210 (223)
T ss_pred             hHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEE
Confidence               233  333345666999999999999988887766444

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.14  E-value=5.1e-11  Score=100.45  Aligned_cols=147  Identities=16%  Similarity=0.254  Sum_probs=98.3

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-------------------CC---eEEEEEeC
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-------------------FD---EVAMAVVS  217 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~---~~~wv~v~  217 (333)
                      ||....++++...+..|+  +|+|+||+|+|||||.+.+.+-.++...                   |+   .--|-++-
T Consensus        13 f~~~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~   90 (248)
T COG1116          13 FGGVEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVL   90 (248)
T ss_pred             eCceEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHH
Confidence            444667778887788888  9999999999999999999977643221                   11   01133222


Q ss_pred             CCC------------CHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889          218 QTP------------SITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD  273 (333)
Q Consensus       218 ~~~------------~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~  273 (333)
                      ++-            ........+++.+|+.+.....      -..+...|.+.|...+-+|+||++....|      +.
T Consensus        91 ~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq  170 (248)
T COG1116          91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ  170 (248)
T ss_pred             hhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHH
Confidence            221            1133567778888886444333      34556779999999999999999986633      22


Q ss_pred             hccCC-CCCCCcEEEEeeCChHHHhhcccceEecCC
Q 046889          274 RVGIP-YGNDGCKFLLTSRSRAACNQMQAHIVDVRT  308 (333)
Q Consensus       274 ~l~~~-~~~~g~~vivTTr~~~v~~~~~~~~~~l~~  308 (333)
                      ..... ....+..|+++||+.+-|-.++++++.|..
T Consensus       171 ~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~  206 (248)
T COG1116         171 DELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN  206 (248)
T ss_pred             HHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecC
Confidence            21111 133467899999999998888877654443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.13  E-value=5.7e-10  Score=106.04  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=96.3

Q ss_pred             ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-C--C-eEEEEEeCCCC--------------
Q 046889          159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-F--D-EVAMAVVSQTP--------------  220 (333)
Q Consensus       159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f--~-~~~wv~v~~~~--------------  220 (333)
                      +.+....++.+...+..+.  .|+|+||||+|||||++.+.+...+... .  . .....++.|..              
T Consensus       331 y~~~~~l~~~~s~~i~~g~--riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~  408 (530)
T COG0488         331 YDGGRLLLKDLSFRIDRGD--RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELS  408 (530)
T ss_pred             cCCCceeecCceEEecCCC--EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHH
Confidence            3344567777777777777  8999999999999999999776643311 0  0 01111111111              


Q ss_pred             ----C-HHHHHHHHHHHhCCCCC------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhcc---CCCCCCCcE
Q 046889          221 ----S-ITKIQDEIAGWLGIKEL------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRVG---IPYGNDGCK  285 (333)
Q Consensus       221 ----~-~~~~~~~i~~~l~~~~~------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~---~~~~~~g~~  285 (333)
                          . .....+..+.+++.+..      ...+ -+..+-.+...+..++-+||||+|.|..|++.+.   -.+..-...
T Consensus       409 ~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gt  488 (530)
T COG0488         409 EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT  488 (530)
T ss_pred             hhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCe
Confidence                0 13445666677766411      1122 2334556778888899999999999998766652   122222334


Q ss_pred             EEEeeCChHHHhhcccceEecCC
Q 046889          286 FLLTSRSRAACNQMQAHIVDVRT  308 (333)
Q Consensus       286 vivTTr~~~v~~~~~~~~~~l~~  308 (333)
                      ||++||++.+.+.+++..+.+.+
T Consensus       489 vl~VSHDr~Fl~~va~~i~~~~~  511 (530)
T COG0488         489 VLLVSHDRYFLDRVATRIWLVED  511 (530)
T ss_pred             EEEEeCCHHHHHhhcceEEEEcC
Confidence            99999999999999988876664

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.13  E-value=5.1e-10  Score=99.89  Aligned_cols=145  Identities=20%  Similarity=0.275  Sum_probs=95.9

Q ss_pred             ccccccccchHHHH---HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889          153 SEGFYNFKSRESTM---KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI  229 (333)
Q Consensus       153 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  229 (333)
                      |.....++|.+..+   .-|...+..+.+.-..+|||+|+||||||+.+.....  ..|     ..++...+-.+-++.+
T Consensus        20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~f-----~~~sAv~~gvkdlr~i   92 (436)
T COG2256          20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AAF-----EALSAVTSGVKDLREI   92 (436)
T ss_pred             CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cce-----EEeccccccHHHHHHH
Confidence            44556677766555   3455566678888899999999999999999998654  233     3333322212222333


Q ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEE--eeCChHH----Hhhccc
Q 046889          230 AGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLL--TSRSRAA----CNQMQA  301 (333)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~viv--TTr~~~v----~~~~~~  301 (333)
                      ++...                .....+++.+|++|++..-  .+-+.+ +|+-..|.-++|  ||.|+.+    +..-..
T Consensus        93 ~e~a~----------------~~~~~gr~tiLflDEIHRfnK~QQD~l-Lp~vE~G~iilIGATTENPsF~ln~ALlSR~  155 (436)
T COG2256          93 IEEAR----------------KNRLLGRRTILFLDEIHRFNKAQQDAL-LPHVENGTIILIGATTENPSFELNPALLSRA  155 (436)
T ss_pred             HHHHH----------------HHHhcCCceEEEEehhhhcChhhhhhh-hhhhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence            32211                1223368899999999754  334444 787788887777  8888876    222233


Q ss_pred             ceEecCCCCHHHHHHHHHhh
Q 046889          302 HIVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       302 ~~~~l~~L~~~e~~~lf~~~  321 (333)
                      .++.+++|+.++-.+++.+-
T Consensus       156 ~vf~lk~L~~~di~~~l~ra  175 (436)
T COG2256         156 RVFELKPLSSEDIKKLLKRA  175 (436)
T ss_pred             heeeeecCCHHHHHHHHHHH
Confidence            44999999999999999883

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.10  E-value=1.4e-10  Score=110.06  Aligned_cols=146  Identities=18%  Similarity=0.302  Sum_probs=97.2

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-C--C-eEEEEEeCCCCCHH------------
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-F--D-EVAMAVVSQTPSIT------------  223 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f--~-~~~wv~v~~~~~~~------------  223 (333)
                      +|....++++...+.+++  .|+|+|.||+|||||++.+.+...+... .  . .....+++|.....            
T Consensus        13 ~g~~~l~~~~~l~~~~G~--riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~   90 (530)
T COG0488          13 YGDRPLLENVSLTLNPGE--RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEG   90 (530)
T ss_pred             eCCceeecCCcceeCCCC--EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhh
Confidence            466677788888888888  8999999999999999999988754321 0  1 11223344443211            


Q ss_pred             ------------------------------------------HHHHHHHHHhCCCCC----CCCC-HHHHHHHHHHHHcc
Q 046889          224 ------------------------------------------KIQDEIAGWLGIKEL----PDND-ELVRASLLCKRIEK  256 (333)
Q Consensus       224 ------------------------------------------~~~~~i~~~l~~~~~----~~~~-~~~~~~~l~~~l~~  256 (333)
                                                                .-...++..++.+..    ...+ .......|.+.|-.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~  170 (530)
T COG0488          91 FGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE  170 (530)
T ss_pred             hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhc
Confidence                                                      111223333444321    1111 23456779999999


Q ss_pred             CceEEEEeCCCCchhhhhccC----CCCCCCcEEEEeeCChHHHhhcccceEecCC
Q 046889          257 QRVLVILDDLWVQIELDRVGI----PYGNDGCKFLLTSRSRAACNQMQAHIVDVRT  308 (333)
Q Consensus       257 k~~LlVlDdv~~~~~~~~l~~----~~~~~g~~vivTTr~~~v~~~~~~~~~~l~~  308 (333)
                      ++-+|+||+|.|..|+..+..    -..-.| .|||+||++.+.+.+++++++++.
T Consensus       171 ~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~  225 (530)
T COG0488         171 EPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDR  225 (530)
T ss_pred             CCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecC
Confidence            999999999999988665521    112235 799999999999999998876654

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.09  E-value=7.1e-09  Score=91.49  Aligned_cols=155  Identities=17%  Similarity=0.232  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDND  242 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~  242 (333)
                      ...+..+...+.. +.+++.|+|++|+|||||++.+++...... . ...|+ +....+..+++..++..++.+. ...+
T Consensus        29 ~~~~~~l~~~~~~-~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~-~~~~  103 (269)
T TIGR03015        29 KRAMAYLEYGLSQ-REGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLET-EGRD  103 (269)
T ss_pred             HHHHHHHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCC-CCCC
Confidence            4455555554433 335899999999999999999998765321 1 12232 3334566788889999988742 2233


Q ss_pred             HHHHHHHHHHH-----HccCceEEEEeCCCCch--hhhhcc--CCC-CCC--CcEEEEeeCChHHHhh--------cccc
Q 046889          243 ELVRASLLCKR-----IEKQRVLVILDDLWVQI--ELDRVG--IPY-GND--GCKFLLTSRSRAACNQ--------MQAH  302 (333)
Q Consensus       243 ~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~l~--~~~-~~~--g~~vivTTr~~~v~~~--------~~~~  302 (333)
                      .......+...     ..++++++|+||++...  .+..+.  ... ...  ...|++|.. ......        +..+
T Consensus       104 ~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~-~~~~~~l~~~~~~~l~~r  182 (269)
T TIGR03015       104 KAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQ-PEFRETLQSPQLQQLRQR  182 (269)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCC-HHHHHHHcCchhHHHHhh
Confidence            33333333332     25678999999998752  233321  111 111  224455543 333211        1111


Q ss_pred             ---eEecCCCCHHHHHHHHHhhcc
Q 046889          303 ---IVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       303 ---~~~l~~L~~~e~~~lf~~~a~  323 (333)
                         .+.+++|+.+|..+++.....
T Consensus       183 ~~~~~~l~~l~~~e~~~~l~~~l~  206 (269)
T TIGR03015       183 IIASCHLGPLDREETREYIEHRLE  206 (269)
T ss_pred             eeeeeeCCCCCHHHHHHHHHHHHH
Confidence               278999999999999987764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.09  E-value=1.8e-10  Score=96.35  Aligned_cols=135  Identities=20%  Similarity=0.306  Sum_probs=89.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc------------------CCCeEEEEEeCCCC----C-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK------------------MFDEVAMAVVSQTP----S-  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~------------------~f~~~~wv~v~~~~----~-  221 (333)
                      .++.+...+..|+  +++|+|++|+|||||++.+.+-.++..                  .+..+-.  |.|++    + 
T Consensus        22 ~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQm--VFQDp~~SLnP   97 (252)
T COG1124          22 ALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQM--VFQDPYSSLNP   97 (252)
T ss_pred             hhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeE--EecCCccccCc
Confidence            6666666666788  999999999999999999987654321                  0111111  11221    1 


Q ss_pred             ---HH----------------HHHHHHHHHhCCC-------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          222 ---IT----------------KIQDEIAGWLGIK-------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       222 ---~~----------------~~~~~i~~~l~~~-------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                         +.                .-..+++.+++++       +..-...+..+-.|.+.|.-++-+||+|++.+..|    
T Consensus        98 ~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQ  177 (252)
T COG1124          98 RRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ  177 (252)
T ss_pred             chhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHH
Confidence               11                1145667777775       11122234556779999999999999999987744    


Q ss_pred             ---hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          272 ---LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       272 ---~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                         |+-+.-.....+-.+|++||+..++..++++.
T Consensus       178 a~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi  212 (252)
T COG1124         178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRI  212 (252)
T ss_pred             HHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhe
Confidence               33332222344778999999999999988876

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.06  E-value=6.2e-10  Score=90.40  Aligned_cols=138  Identities=14%  Similarity=0.231  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCC--------------------CHH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTP--------------------SIT-  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--------------------~~~-  223 (333)
                      .++++.....+++  |++|.|+||+||||+++.++....+.+.--.+.-++....+                    +.+ 
T Consensus        17 AvrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rE   94 (245)
T COG4555          17 AVRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARE   94 (245)
T ss_pred             hhhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHH
Confidence            4556666556677  99999999999999999999887654321111011111111                    111 


Q ss_pred             -----------------HHHHHHHHHhCCCCC------CCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hh
Q 046889          224 -----------------KIQDEIAGWLGIKEL------PDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DR  274 (333)
Q Consensus       224 -----------------~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~  274 (333)
                                       .-...+.+.+++.+.      .-+......-.+.+.|-.++-++|||++.+..|+      .+
T Consensus        95 nl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~d  174 (245)
T COG4555          95 NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHD  174 (245)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHH
Confidence                             112223333333211      0111223344678888899999999999987663      33


Q ss_pred             ccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      +.....+.|-.||+.||..+-.+.++++.+
T Consensus       175 fi~q~k~egr~viFSSH~m~EvealCDrvi  204 (245)
T COG4555         175 FIKQLKNEGRAVIFSSHIMQEVEALCDRVI  204 (245)
T ss_pred             HHHHhhcCCcEEEEecccHHHHHHhhheEE
Confidence            445556668889999999998887777774

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.05  E-value=4.7e-10  Score=94.37  Aligned_cols=140  Identities=12%  Similarity=0.232  Sum_probs=88.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-------------------CCeEEEEEeCCCCC----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-------------------FDEVAMAVVSQTPS----  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~~wv~v~~~~~----  221 (333)
                      .++.+...+..++  +++|+||+|+|||||+..+..-.++...                   |...-.-.+.|.++    
T Consensus        20 ~L~~v~l~i~~Ge--~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~   97 (226)
T COG1136          20 ALKDVNLEIEAGE--FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD   97 (226)
T ss_pred             ecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence            4555566666788  9999999999999999999865543210                   11111122333331    


Q ss_pred             --------------------HHHHHHHHHHHhCCCCCC------CC-CHHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889          222 --------------------ITKIQDEIAGWLGIKELP------DN-DELVRASLLCKRIEKQRVLVILDDLWVQIE---  271 (333)
Q Consensus       222 --------------------~~~~~~~i~~~l~~~~~~------~~-~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---  271 (333)
                                          .......+++.+++.+..      .. .-++++..+.+.|..++-+|+.|++....|   
T Consensus        98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t  177 (226)
T COG1136          98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT  177 (226)
T ss_pred             CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence                                122344566666664111      12 245667789999999999999999985533   


Q ss_pred             ---hhhccCCC-CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          272 ---LDRVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       272 ---~~~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                         +..+.... ...|..||++||++.++.. +++.|.+.
T Consensus       178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~-~dr~i~l~  216 (226)
T COG1136         178 AKEVLELLRELNKERGKTIIMVTHDPELAKY-ADRVIELK  216 (226)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh-CCEEEEEe
Confidence               33332333 2348899999999999984 44455444

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.04  E-value=1.1e-09  Score=94.07  Aligned_cols=161  Identities=19%  Similarity=0.296  Sum_probs=83.9

Q ss_pred             ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH---------
Q 046889          159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI---------  229 (333)
Q Consensus       159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i---------  229 (333)
                      |+||+.+++.|...+..+....+.|+||.|+|||+|++.+.+..+... + ..+|+....... ......+         
T Consensus         1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~-~~~~~~~~~~~~~~~~   77 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESN-ESSLRSFIEETSLADE   77 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSH-HHHHHHHHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchh-hhHHHHHHHHHHHHHH
Confidence            789999999999999887667999999999999999999998774321 1 222333323322 2111121         


Q ss_pred             -HHHhC----CCCC------CCCCHHHHHHHHHHHHcc--CceEEEEeCCCCch-h----------hhhccCC-CCCCCc
Q 046889          230 -AGWLG----IKEL------PDNDELVRASLLCKRIEK--QRVLVILDDLWVQI-E----------LDRVGIP-YGNDGC  284 (333)
Q Consensus       230 -~~~l~----~~~~------~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~-~----------~~~l~~~-~~~~g~  284 (333)
                       ...++    ....      ...........+.+.+..  ++.+||+||+.... .          +..+... ......
T Consensus        78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  157 (234)
T PF01637_consen   78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV  157 (234)
T ss_dssp             CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred             HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence             11121    1000      111223334444444443  45999999986554 1          1111111 122344


Q ss_pred             EEEEeeCChHHHhh--------cccce-EecCCCCHHHHHHHHHhhc
Q 046889          285 KFLLTSRSRAACNQ--------MQAHI-VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       285 ~vivTTr~~~v~~~--------~~~~~-~~l~~L~~~e~~~lf~~~a  322 (333)
                      .+|++..+......        .+... +.+++|+.+++++++....
T Consensus       158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~  204 (234)
T PF01637_consen  158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELF  204 (234)
T ss_dssp             EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHH
T ss_pred             eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHH
Confidence            55566655544332        11122 8999999999999999853

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.03  E-value=9.7e-10  Score=90.14  Aligned_cols=163  Identities=12%  Similarity=0.175  Sum_probs=99.6

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh--hcCCCeEEEE------------------
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE--KKMFDEVAMA------------------  214 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~f~~~~wv------------------  214 (333)
                      +..-+||....++.+.-.+..+.  |.+++||+|+|||||++.+......  ..+.+..+++                  
T Consensus        12 ~l~~yYg~~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~   89 (253)
T COG1117          12 DLNLYYGDKHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRR   89 (253)
T ss_pred             ceeEEECchhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHH
Confidence            34557888888888888777777  9999999999999999998644321  1111122221                  


Q ss_pred             --EeCCCCC--HHHHH-----------------HHH----HHH----------hCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889          215 --VVSQTPS--ITKIQ-----------------DEI----AGW----------LGIKELPDNDELVRASLLCKRIEKQRV  259 (333)
Q Consensus       215 --~v~~~~~--~~~~~-----------------~~i----~~~----------l~~~~~~~~~~~~~~~~l~~~l~~k~~  259 (333)
                        .|.|.++  +..+.                 .++    ++.          +......-+..++++-.|.+.|.-++-
T Consensus        90 vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~Pe  169 (253)
T COG1117          90 VGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPE  169 (253)
T ss_pred             heeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCc
Confidence              1112221  11111                 111    111          111122222345566678999999999


Q ss_pred             EEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccce--EecCC-CCHHHHHHHHHh
Q 046889          260 LVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI--VDVRT-LTEEESWRSAEG  320 (333)
Q Consensus       260 LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~--~~l~~-L~~~e~~~lf~~  320 (333)
                      +|++|++.+..|      .+.+...+. ..-.|||+|||..-|.++++..  +.+.. ....+..++|.+
T Consensus       170 VlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~  238 (253)
T COG1117         170 VLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN  238 (253)
T ss_pred             EEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence            999999987744      445544434 3557999999999998888776  33333 344555556543

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.98  E-value=2.4e-09  Score=87.87  Aligned_cols=116  Identities=17%  Similarity=0.225  Sum_probs=74.4

Q ss_pred             HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHH
Q 046889          172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRAS  248 (333)
Q Consensus       172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  248 (333)
                      .+.+++  +++|+|++|+|||||++.+.+...+...   ++......+++...                  -..-+....
T Consensus        21 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv   80 (177)
T cd03222          21 VVKEGE--VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID------------------LSGGELQRV   80 (177)
T ss_pred             EECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHH
Confidence            345666  9999999999999999999987654321   11111112222211                  122344566


Q ss_pred             HHHHHHccCceEEEEeCCCCchhhh------hccCCCCCC-CcEEEEeeCChHHHhhcccceEecC
Q 046889          249 LLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGND-GCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       249 ~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .+.+.+..++-+++||++.+..+..      .+....... +..||++||+......+++..+.+.
T Consensus        81 ~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~  146 (177)
T cd03222          81 AIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE  146 (177)
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEc
Confidence            7888888899999999998764422      222222223 3779999999998877766664444

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.97  E-value=6e-10  Score=93.05  Aligned_cols=141  Identities=16%  Similarity=0.239  Sum_probs=93.9

Q ss_pred             cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE---------------------Ee
Q 046889          158 NFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA---------------------VV  216 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv---------------------~v  216 (333)
                      .-+|....++.+...+..++  +.+|+|++|+|||||.+.+.+..+++.   ..+|+                     .+
T Consensus        16 ~~fG~~~Ild~v~l~V~~Ge--i~~iiGgSGsGKStlLr~I~Gll~P~~---GeI~i~G~~i~~ls~~~~~~ir~r~Gvl   90 (263)
T COG1127          16 KSFGDRVILDGVDLDVPRGE--ILAILGGSGSGKSTLLRLILGLLRPDK---GEILIDGEDIPQLSEEELYEIRKRMGVL   90 (263)
T ss_pred             eecCCEEEecCceeeecCCc--EEEEECCCCcCHHHHHHHHhccCCCCC---CeEEEcCcchhccCHHHHHHHHhheeEE
Confidence            34577778888888787888  999999999999999999998766432   11111                     11


Q ss_pred             CCC---------------------CCHHHHHHHH----HHHhCCCCC-CC------CCHHHHHHHHHHHHccCceEEEEe
Q 046889          217 SQT---------------------PSITKIQDEI----AGWLGIKEL-PD------NDELVRASLLCKRIEKQRVLVILD  264 (333)
Q Consensus       217 ~~~---------------------~~~~~~~~~i----~~~l~~~~~-~~------~~~~~~~~~l~~~l~~k~~LlVlD  264 (333)
                      -|.                     .-++..++++    ++..|++.. ..      ..-...+..+.+.+.-.+-|+++|
T Consensus        91 FQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~D  170 (263)
T COG1127          91 FQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLD  170 (263)
T ss_pred             eeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEec
Confidence            110                     0112333333    444555422 11      123445677999999999999999


Q ss_pred             CCCCchh------hhhccCCCCCC-CcEEEEeeCChHHHhhcccce
Q 046889          265 DLWVQIE------LDRVGIPYGND-GCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       265 dv~~~~~------~~~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~  303 (333)
                      ++.+..|      +..+.....+. |+.++++||+.+-+..++++.
T Consensus       171 EPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv  216 (263)
T COG1127         171 EPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRV  216 (263)
T ss_pred             CCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceE
Confidence            9886643      55554444433 889999999999888777766

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.96  E-value=1.2e-09  Score=92.52  Aligned_cols=141  Identities=16%  Similarity=0.216  Sum_probs=86.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------EEEEEeCCCC-------CH---
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------VAMAVVSQTP-------SI---  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------~~wv~v~~~~-------~~---  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.         ....++++.+       +.   
T Consensus        15 ~l~~v~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~   92 (205)
T cd03226          15 ILDDLSLDLYAGE--IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE   92 (205)
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence            4555555566777  9999999999999999999976543211   000         0112223321       00   


Q ss_pred             -----------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCC
Q 046889          223 -----------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPY  279 (333)
Q Consensus       223 -----------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~  279 (333)
                                 .....++++.+++.....     .+ .+.....+.+.+..++-+++||++.+..|      +..+....
T Consensus        93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  172 (205)
T cd03226          93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL  172 (205)
T ss_pred             HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence                       112344556666542211     12 33445668888888999999999987644      22222222


Q ss_pred             CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          280 GNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       280 ~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      ...|..||++||+...+..++++.+.+.
T Consensus       173 ~~~~~tii~~sH~~~~~~~~~d~i~~l~  200 (205)
T cd03226         173 AAQGKAVIVITHDYEFLAKVCDRVLLLA  200 (205)
T ss_pred             HHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            2347789999999998877777665543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.95  E-value=9e-10  Score=98.01  Aligned_cols=145  Identities=17%  Similarity=0.261  Sum_probs=95.9

Q ss_pred             ccccc-hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCe----------EEEEEeCCCCC
Q 046889          157 YNFKS-RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDE----------VAMAVVSQTPS  221 (333)
Q Consensus       157 ~~~~g-r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~----------~~wv~v~~~~~  221 (333)
                      ...+| ....++.+...+..++  +++++|+||+|||||.+.+.+..++.+.    +..          ....++++.+.
T Consensus        11 ~k~~~~~~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~   88 (293)
T COG1131          11 TKKYGGDKTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS   88 (293)
T ss_pred             EEEeCCCCEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCC
Confidence            34556 4667777887777787  9999999999999999999988764320    000          01123333321


Q ss_pred             ------H------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889          222 ------I------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE  271 (333)
Q Consensus       222 ------~------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~  271 (333)
                            .                  ......+++.+++.....     .+ -+...-.+...|..++-+++||++.+..|
T Consensus        89 ~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLD  168 (293)
T COG1131          89 LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLD  168 (293)
T ss_pred             CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCC
Confidence                  1                  234556777777754211     11 23445678888899999999999987644


Q ss_pred             ------hhhccCCCCCCC-cEEEEeeCChHHHhhcccce
Q 046889          272 ------LDRVGIPYGNDG-CKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       272 ------~~~l~~~~~~~g-~~vivTTr~~~v~~~~~~~~  303 (333)
                            +..+.......| ..|++|||....+..++++.
T Consensus       169 p~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v  207 (293)
T COG1131         169 PESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRV  207 (293)
T ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEE
Confidence                  333323334444 78999999999988877655

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.95  E-value=9.8e-10  Score=98.55  Aligned_cols=137  Identities=15%  Similarity=0.241  Sum_probs=84.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT-  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~-  223 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+...+...   +..           ....++++.+      +.. 
T Consensus         8 ~l~~vs~~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   85 (302)
T TIGR01188         8 AVDGVNFKVREGE--VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE   85 (302)
T ss_pred             EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence            4555555566777  9999999999999999999977543211   000           0012223322      111 


Q ss_pred             -----------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhh
Q 046889          224 -----------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDR  274 (333)
Q Consensus       224 -----------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~  274 (333)
                                       .....+++.+++.....     .+ .+...-.+...|..++-+++||++.+..|      +..
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~  165 (302)
T TIGR01188        86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD  165 (302)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence                             11234556666542111     12 24445678888889999999999987744      222


Q ss_pred             ccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          275 VGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      +.......|..||+|||+.+.+..++++.
T Consensus       166 ~l~~~~~~g~tvi~~sH~~~~~~~~~d~v  194 (302)
T TIGR01188       166 YIRALKEEGVTILLTTHYMEEADKLCDRI  194 (302)
T ss_pred             HHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence            22223334788999999999877766665

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.95  E-value=7.7e-10  Score=99.25  Aligned_cols=143  Identities=13%  Similarity=0.185  Sum_probs=88.4

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC-----
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP-----  220 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~-----  220 (333)
                      +|....++.+...+..++  +++|+|+||+|||||++.+.+...+...   +.           .....++++.+     
T Consensus        17 ~~~~~~l~~vsl~i~~Ge--i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~   94 (306)
T PRK13537         17 YGDKLVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPD   94 (306)
T ss_pred             ECCeEEEecceEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCC
Confidence            344446677777777787  9999999999999999999987644221   00           00112233322     


Q ss_pred             -CHH------------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          221 -SIT------------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       221 -~~~------------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                       +..                  .....+++.+++......     + -+...-.+...|..++-+++||++.+..|    
T Consensus        95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~  174 (306)
T PRK13537         95 FTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR  174 (306)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHH
Confidence             111                  112234455555321111     1 23345568888889999999999987754    


Q ss_pred             --hhhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                        +..+.......|..||+|||+.+.+..++++.+
T Consensus       175 ~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~  209 (306)
T PRK13537        175 HLMWERLRSLLARGKTILLTTHFMEEAERLCDRLC  209 (306)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence              222222333448889999999998877776663

>PRK06893 DNA replication initiation factor; Validated

Probab=98.94  E-value=1.2e-08  Score=87.64  Aligned_cols=121  Identities=19%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ  257 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k  257 (333)
                      .+.+.|+|+.|+|||+|++.+++......  ....|+.+...   .....                     .+.+.+. +
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~--~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~   91 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQ--RTAIYIPLSKS---QYFSP---------------------AVLENLE-Q   91 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence            34789999999999999999998865332  23445544210   00000                     1111222 3


Q ss_pred             ceEEEEeCCCCc---hhhhh----ccCCCCCCCcEEEEeeCCh----------HHHhhcccce-EecCCCCHHHHHHHHH
Q 046889          258 RVLVILDDLWVQ---IELDR----VGIPYGNDGCKFLLTSRSR----------AACNQMQAHI-VDVRTLTEEESWRSAE  319 (333)
Q Consensus       258 ~~LlVlDdv~~~---~~~~~----l~~~~~~~g~~vivTTr~~----------~v~~~~~~~~-~~l~~L~~~e~~~lf~  319 (333)
                      ..+|+|||+|..   ..|..    +.-.....|+.+|++|++.          .+..++.... +.++++++++.+++++
T Consensus        92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~  171 (229)
T PRK06893         92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ  171 (229)
T ss_pred             CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence            459999999863   23332    1111223356665554443          4455555444 8999999999999999


Q ss_pred             hhcccC
Q 046889          320 GKRRVC  325 (333)
Q Consensus       320 ~~a~~~  325 (333)
                      +.++..
T Consensus       172 ~~a~~~  177 (229)
T PRK06893        172 RNAYQR  177 (229)
T ss_pred             HHHHHc
Confidence            988643

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.94  E-value=2.2e-09  Score=88.04  Aligned_cols=131  Identities=17%  Similarity=0.166  Sum_probs=78.5

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh---hc---CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE---KK---MFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL-  238 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~---~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-  238 (333)
                      ++.+...+..++  +++|+|+||+|||||++.+......   ..   .+.......+.+        .+.++.+++... 
T Consensus        11 l~~isl~i~~G~--~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~L~~~~   80 (176)
T cd03238          11 LQNLDVSIPLNV--LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVGLGYLT   80 (176)
T ss_pred             ecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HHHHHHcCCCccc
Confidence            344444555667  9999999999999999998632110   00   010101112222        356677776421 


Q ss_pred             CC-----CC-HHHHHHHHHHHHccC--ceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          239 PD-----ND-ELVRASLLCKRIEKQ--RVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       239 ~~-----~~-~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      ..     .+ .+.....+.+.+..+  +-+++||++.+..+..      .........|..||++||+.+... .+++.+
T Consensus        81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~  159 (176)
T cd03238          81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWII  159 (176)
T ss_pred             cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEE
Confidence            11     12 244556678888888  8999999998764422      221222224778999999998864 455555


Q ss_pred             ecC
Q 046889          305 DVR  307 (333)
Q Consensus       305 ~l~  307 (333)
                      .+.
T Consensus       160 ~l~  162 (176)
T cd03238         160 DFG  162 (176)
T ss_pred             EEC
Confidence            554

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.93  E-value=8.2e-10  Score=100.29  Aligned_cols=144  Identities=15%  Similarity=0.217  Sum_probs=89.8

Q ss_pred             ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CC----------eEEEEEeCCCC----
Q 046889          159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FD----------EVAMAVVSQTP----  220 (333)
Q Consensus       159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~----------~~~wv~v~~~~----  220 (333)
                      .+|....++.+...+..|+  +++|+|+||+|||||++.+.+...+...    +.          .....++++.+    
T Consensus        50 ~y~~~~~l~~is~~i~~Ge--i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~  127 (340)
T PRK13536         50 SYGDKAVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDL  127 (340)
T ss_pred             EECCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCC
Confidence            3454456777777777787  9999999999999999999987643221    00          00112233321    


Q ss_pred             --CHHH------------------HHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889          221 --SITK------------------IQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE---  271 (333)
Q Consensus       221 --~~~~------------------~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---  271 (333)
                        +..+                  ....+++.+++......     + .+...-.+...|..++-+++||++.+..|   
T Consensus       128 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~  207 (340)
T PRK13536        128 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA  207 (340)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence              1111                  12234555555422111     1 23445678888889999999999987644   


Q ss_pred             ---hhhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          272 ---LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       272 ---~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                         +..+.......|..||++||+.+.+..++++.+
T Consensus       208 r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~  243 (340)
T PRK13536        208 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLC  243 (340)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence               222222233347889999999998887777663

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.93  E-value=7.8e-09  Score=91.14  Aligned_cols=148  Identities=15%  Similarity=0.168  Sum_probs=97.1

Q ss_pred             ccccccchHHHHH---HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          155 GFYNFKSRESTMK---DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       155 ~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      ...+++|.+..+.   -|...+..+++.-+.+|||.|+||||||+.+....+...    ..++..+-...-..-++.|.+
T Consensus       136 tL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife  211 (554)
T KOG2028|consen  136 TLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE  211 (554)
T ss_pred             hHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence            3445666554432   233444578888999999999999999999998766433    446666655443344444444


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEE--eeCChHH----Hhhcccce
Q 046889          232 WLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLL--TSRSRAA----CNQMQAHI  303 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~viv--TTr~~~v----~~~~~~~~  303 (333)
                      +-..               ...+..++-+|.+|++..-  .+-+. .+|...+|..++|  ||.|+.+    +..-...+
T Consensus       212 ~aq~---------------~~~l~krkTilFiDEiHRFNksQQD~-fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~V  275 (554)
T KOG2028|consen  212 QAQN---------------EKSLTKRKTILFIDEIHRFNKSQQDT-FLPHVENGDITLIGATTENPSFQLNAALLSRCRV  275 (554)
T ss_pred             HHHH---------------HHhhhcceeEEEeHHhhhhhhhhhhc-ccceeccCceEEEecccCCCccchhHHHHhccce
Confidence            3221               1234467889999999643  33333 4788888886666  8888876    22122334


Q ss_pred             EecCCCCHHHHHHHHHhhc
Q 046889          304 VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       304 ~~l~~L~~~e~~~lf~~~a  322 (333)
                      +.|+.|+.++...++.+..
T Consensus       276 fvLekL~~n~v~~iL~rai  294 (554)
T KOG2028|consen  276 FVLEKLPVNAVVTILMRAI  294 (554)
T ss_pred             eEeccCCHHHHHHHHHHHH
Confidence            8999999999888888743

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=4.2e-09  Score=87.46  Aligned_cols=139  Identities=19%  Similarity=0.254  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh--hc---CCC--------------eEEEEEeCCCC---
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE--KK---MFD--------------EVAMAVVSQTP---  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~---~f~--------------~~~wv~v~~~~---  220 (333)
                      .+.++.+...+..++  +-+|.||||+|||||+..+.++..-  ..   -|+              .-+++..-.+.   
T Consensus        17 keILkgvnL~v~~GE--vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~   94 (251)
T COG0396          17 KEILKGVNLTVKEGE--VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP   94 (251)
T ss_pred             hhhhcCcceeEcCCc--EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC
Confidence            467777777777788  8999999999999999999977631  10   011              11111111111   


Q ss_pred             --CH---------------------HHHHHHHHHHhCCCC-CCC-------CCHHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889          221 --SI---------------------TKIQDEIAGWLGIKE-LPD-------NDELVRASLLCKRIEKQRVLVILDDLWVQ  269 (333)
Q Consensus       221 --~~---------------------~~~~~~i~~~l~~~~-~~~-------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~  269 (333)
                        +.                     ...++..++.++.++ ...       +.-+..+..+.+.+.-++-|.|||++.+.
T Consensus        95 GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSG  174 (251)
T COG0396          95 GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSG  174 (251)
T ss_pred             CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcC
Confidence              11                     223334444455431 000       11244567788888899999999999998


Q ss_pred             hhhhhcc------CCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          270 IELDRVG------IPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       270 ~~~~~l~------~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      .|.+.+.      -.+.+.|+.++++||...+++.+....
T Consensus       175 LDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~  214 (251)
T COG0396         175 LDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK  214 (251)
T ss_pred             ccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence            8776662      223455888999999999998886544

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.93  E-value=1.2e-09  Score=93.38  Aligned_cols=142  Identities=17%  Similarity=0.241  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CH-
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SI-  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~-  222 (333)
                      ..++.+...+.+++  +++|+|+||+|||||++.+.+...+...   |..           ....++++.+      +. 
T Consensus        14 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   91 (220)
T cd03265          14 EAVRGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW   91 (220)
T ss_pred             EeeeceeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence            34556666666777  9999999999999999999976543210   000           0112233332      11 


Q ss_pred             -----------------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------
Q 046889          223 -----------------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------  273 (333)
Q Consensus       223 -----------------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------  273 (333)
                                       ......+++.+++....     ..+ .+.....+...+..++-+++||++.+..|..      
T Consensus        92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~  171 (220)
T cd03265          92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW  171 (220)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence                             01123445555553211     112 2334556888888899999999998765422      


Q ss_pred             hccCCCCC-CCcEEEEeeCChHHHhhcccceEecC
Q 046889          274 RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       274 ~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .+...... .|..||++||+.+.+..++++.+.++
T Consensus       172 ~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~  206 (220)
T cd03265         172 EYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIID  206 (220)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            22122222 36789999999998877777665553

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.93  E-value=1.2e-09  Score=92.99  Aligned_cols=141  Identities=18%  Similarity=0.259  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------EEEEEeCCCCC--------H----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------VAMAVVSQTPS--------I----  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------~~wv~v~~~~~--------~----  222 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |+.       ....++++.+.        .    
T Consensus        14 ~l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l   91 (213)
T cd03235          14 VLEDVSFEVKPGE--FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVV   91 (213)
T ss_pred             eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHH
Confidence            4556666666777  9999999999999999999876543211   110       00112222211        0    


Q ss_pred             ------------------HHHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------
Q 046889          223 ------------------TKIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------  272 (333)
Q Consensus       223 ------------------~~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------  272 (333)
                                        ......+++.+++..     ....+ -+.....+...+..++-+++||++.+..|.      
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l  171 (213)
T cd03235          92 LMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI  171 (213)
T ss_pred             HhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence                              112234445555431     11122 234455677888889999999999876442      


Q ss_pred             hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      ..+.......|..||++||+.+.+..++++.+.+.
T Consensus       172 ~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~  206 (213)
T cd03235         172 YELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN  206 (213)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEc
Confidence            22222222347789999999998877777765554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.92  E-value=1.6e-09  Score=92.29  Aligned_cols=142  Identities=15%  Similarity=0.242  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CHH-
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SIT-  223 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~~-  223 (333)
                      ..++.+...+.+++  +++|+|+||+|||||++.+.+...+...   |+          .....++++.+      +.. 
T Consensus        14 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   91 (213)
T cd03259          14 RALDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE   91 (213)
T ss_pred             eeecceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence            35566666666777  9999999999999999999976543210   10          00112333332      110 


Q ss_pred             -----------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------h
Q 046889          224 -----------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------R  274 (333)
Q Consensus       224 -----------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~  274 (333)
                                       ....++++.+++....     ..+ -+...-.+.+.|..++-+++||++.+..|..      .
T Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~  171 (213)
T cd03259          92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELRE  171 (213)
T ss_pred             HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                             1123455556553211     112 3344566888888899999999998775422      2


Q ss_pred             ccCCCCC-CCcEEEEeeCChHHHhhcccceEecC
Q 046889          275 VGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       275 l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      +...... .|..||++||+......++++.+.++
T Consensus       172 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~  205 (213)
T cd03259         172 ELKELQRELGITTIYVTHDQEEALALADRIAVMN  205 (213)
T ss_pred             HHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEE
Confidence            2222222 37789999999998777777665543

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.91  E-value=2.8e-09  Score=91.09  Aligned_cols=141  Identities=17%  Similarity=0.262  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT-  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~-  223 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.           .....+++.+      +.. 
T Consensus        20 il~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   97 (218)
T cd03266          20 AVDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE   97 (218)
T ss_pred             eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence            4555555566677  8999999999999999999977543211   000           0011222221      111 


Q ss_pred             -----------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhh
Q 046889          224 -----------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDR  274 (333)
Q Consensus       224 -----------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~  274 (333)
                                       ....++++.+++.....     .+ .+.....+.+.+..++-+++||++.+..|      +..
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~  177 (218)
T cd03266          98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE  177 (218)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence                             11233455555531111     11 23345568888888999999999987644      222


Q ss_pred             ccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      +.......|..||++||+...+..++++.+.+.
T Consensus       178 ~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~  210 (218)
T cd03266         178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLH  210 (218)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            222223347789999999998777777665443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.91  E-value=2.1e-09  Score=91.32  Aligned_cols=140  Identities=14%  Similarity=0.218  Sum_probs=84.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------CH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------SI  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------~~  222 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |+.            ....++++.+       +.
T Consensus        16 il~~vs~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~   93 (211)
T cd03225          16 ALDDISLTIKKGE--FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV   93 (211)
T ss_pred             eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence            4555555566677  9999999999999999999976543210   000            0011222221       11


Q ss_pred             H------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------
Q 046889          223 T------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------  272 (333)
Q Consensus       223 ~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------  272 (333)
                      .                  .....+++.+++...     ...+ -+...-.+.+.+..++-+++||++.+..|.      
T Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~  173 (211)
T cd03225          94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL  173 (211)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            1                  112234555555311     1122 344556688888889999999999877442      


Q ss_pred             hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..+.......|..||++||+...+..++++.+.+
T Consensus       174 ~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l  207 (211)
T cd03225         174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVL  207 (211)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            2222222233778999999999888777766554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.90  E-value=2.2e-09  Score=88.89  Aligned_cols=137  Identities=15%  Similarity=0.276  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE---eCCCCCHHH------HHHHHHHHhCC
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV---VSQTPSITK------IQDEIAGWLGI  235 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~---v~~~~~~~~------~~~~i~~~l~~  235 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+.   ...+++.   +.. .+...      ...++++.+++
T Consensus        14 ~l~~~~~~i~~G~--~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl   87 (180)
T cd03214          14 VLDDLSLSIEAGE--IVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLAS-LSPKELARKIAYVPQALELLGL   87 (180)
T ss_pred             eEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCC
Confidence            3444444455667  99999999999999999999876432   2233321   111 11111      12225666665


Q ss_pred             CCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCC-CcEEEEeeCChHHHhhcccc
Q 046889          236 KEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGND-GCKFLLTSRSRAACNQMQAH  302 (333)
Q Consensus       236 ~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~-g~~vivTTr~~~v~~~~~~~  302 (333)
                      ...     ...+ .+...-.+.+.+..++-+++||++.+..|..      .+....... |+.||++||+......++++
T Consensus        88 ~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~  167 (180)
T cd03214          88 AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR  167 (180)
T ss_pred             HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            421     1122 3445667888888999999999998764422      222222233 67899999999987777776


Q ss_pred             eEecC
Q 046889          303 IVDVR  307 (333)
Q Consensus       303 ~~~l~  307 (333)
                      .+.+.
T Consensus       168 ~~~l~  172 (180)
T cd03214         168 VILLK  172 (180)
T ss_pred             EEEEE
Confidence            65443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.90  E-value=1e-09  Score=93.18  Aligned_cols=141  Identities=17%  Similarity=0.245  Sum_probs=82.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--------eEEEEEeCCCC------CHH----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--------EVAMAVVSQTP------SIT----  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--------~~~wv~v~~~~------~~~----  223 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++        .....++++.+      +..    
T Consensus        15 ~l~~v~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~   92 (210)
T cd03269          15 ALDDISFSVEKGE--IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLV   92 (210)
T ss_pred             EEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHH
Confidence            3444444455677  9999999999999999999976542210   00        00111223221      111    


Q ss_pred             --------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccC
Q 046889          224 --------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGI  277 (333)
Q Consensus       224 --------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~  277 (333)
                                    ....++++.+++....     ..+ -+.....+...+..++-+++||++.+..|..      .+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~  172 (210)
T cd03269          93 YLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIR  172 (210)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence                          1123345555553111     112 2334456788888889999999998764422      2222


Q ss_pred             CCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          278 PYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       278 ~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .....|..||++||+...+..++++.+.+.
T Consensus       173 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~  202 (210)
T cd03269         173 ELARAGKTVILSTHQMELVEELCDRVLLLN  202 (210)
T ss_pred             HHHHCCCEEEEECCCHHHHHHhhhEEEEEe
Confidence            222347789999999998777666665443

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.89  E-value=7.3e-10  Score=99.33  Aligned_cols=148  Identities=17%  Similarity=0.236  Sum_probs=97.6

Q ss_pred             ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEE----------EEeCCCC---
Q 046889          157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAM----------AVVSQTP---  220 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~w----------v~v~~~~---  220 (333)
                      ...||....++++...+..++  ++++.||+|+|||||++.|.+...+.+.   ++...+          -.|.|++   
T Consensus        12 ~k~yg~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALF   89 (352)
T COG3842          12 SKSFGDFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALF   89 (352)
T ss_pred             eeecCCeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccC
Confidence            445666667777887787888  9999999999999999999977655431   000000          0111111   


Q ss_pred             -------------------C---HHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 -------------------S---ITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 -------------------~---~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                                         .   ......++++.+++.......      -+++...+.+.|..++-+|+||++-+..|.
T Consensus        90 PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~  169 (352)
T COG3842          90 PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDA  169 (352)
T ss_pred             CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhH
Confidence                               1   223455666666665433332      344566799999999999999999877441


Q ss_pred             h-------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 D-------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~-------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +       .+.-.....|..+|..||+..-|..++++...|
T Consensus       170 kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm  210 (352)
T COG3842         170 KLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVM  210 (352)
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEc
Confidence            1       111122344889999999999999998887433

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.89  E-value=4.6e-09  Score=91.88  Aligned_cols=141  Identities=12%  Similarity=0.188  Sum_probs=85.7

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-------EEEEeCCCC------CH--
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-------AMAVVSQTP------SI--  222 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-------~wv~v~~~~------~~--  222 (333)
                      +....++.+...+..++  +++|+|++|+|||||++.+.+...+...   |+..       ...++.+.+      ++  
T Consensus        23 ~~~~il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~e  100 (257)
T PRK11247         23 GERTVLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVID  100 (257)
T ss_pred             CCcceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHH
Confidence            43446666766666777  9999999999999999999977543211   1100       011222221      11  


Q ss_pred             ----------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC-
Q 046889          223 ----------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY-  279 (333)
Q Consensus       223 ----------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~-  279 (333)
                                ......+++.+++....     ..+ .+.....+...|..++-+++||++.+..|..      .+.... 
T Consensus       101 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~  180 (257)
T PRK11247        101 NVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW  180 (257)
T ss_pred             HHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence                      11233455666654211     112 2344566888888899999999998775422      221222 


Q ss_pred             CCCCcEEEEeeCChHHHhhcccce
Q 046889          280 GNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       280 ~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      ...|..||++||+...+..++++.
T Consensus       181 ~~~~~tviivsHd~~~~~~~~d~i  204 (257)
T PRK11247        181 QQHGFTVLLVTHDVSEAVAMADRV  204 (257)
T ss_pred             HHcCCEEEEEeCCHHHHHHhCCEE
Confidence            223678999999998766655554

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.89  E-value=3.8e-09  Score=89.97  Aligned_cols=139  Identities=17%  Similarity=0.231  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC------CHH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP------SIT  223 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~------~~~  223 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++           ...+  +.+.+      +..
T Consensus        25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~--~~q~~~~~~~~t~~  100 (214)
T PRK13543         25 PVFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY--LGHLPGLKADLSTL  100 (214)
T ss_pred             eeeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE--eecCcccccCCcHH
Confidence            45666666677777  8999999999999999999977543211   11           0112  22221      111


Q ss_pred             ---------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hcc
Q 046889          224 ---------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVG  276 (333)
Q Consensus       224 ---------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~  276 (333)
                                     .....++..+++......     + .+.....+.+.+..++-+++||++.+..|..      .+.
T Consensus       101 e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  180 (214)
T PRK13543        101 ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI  180 (214)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence                           122344555554321111     1 2344566788888889999999998775422      222


Q ss_pred             CCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          277 IPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       277 ~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ......|..||++||+...+..++++.+.+
T Consensus       181 ~~~~~~~~tiii~sH~~~~~~~~~~~i~~l  210 (214)
T PRK13543        181 SAHLRGGGAALVTTHGAYAAPPVRTRMLTL  210 (214)
T ss_pred             HHHHhCCCEEEEEecChhhhhhhcceEEEE
Confidence            222334678999999999888877776544

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.89  E-value=8.8e-09  Score=87.86  Aligned_cols=141  Identities=13%  Similarity=0.211  Sum_probs=85.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------  220 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |+.               ....++++.+      
T Consensus        18 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   95 (216)
T TIGR00960        18 ALDNLNFHITKGE--MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR   95 (216)
T ss_pred             EEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence            4455555566777  9999999999999999999876543110   000               0011222221      


Q ss_pred             CHH------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889          221 SIT------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD---  273 (333)
Q Consensus       221 ~~~------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---  273 (333)
                      +..                  ....++++.+++.....     .+ -+.....+.+.|..++-+++||++.+..|..   
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~  175 (216)
T TIGR00960        96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR  175 (216)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence            111                  11233455555532111     12 3445567888888999999999998775422   


Q ss_pred             ---hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          274 ---RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       274 ---~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                         .+.......|..||++||+.+.+..++++.+.+.
T Consensus       176 ~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~  212 (216)
T TIGR00960       176 DIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLS  212 (216)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence               2222222347789999999998877777665553

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.89  E-value=9e-09  Score=80.36  Aligned_cols=114  Identities=23%  Similarity=0.281  Sum_probs=79.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIE  255 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  255 (333)
                      +.+.|+|+.|+|||++++.+........   .-...+|+.++...+...+.+.++..++.......+...+...+.+.+.
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~   84 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD   84 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence            4889999999999999999998764311   1234568888877789999999999999865555667778888888888


Q ss_pred             cCce-EEEEeCCCCc-h--hhhhccCCCCCCCcEEEEeeCC
Q 046889          256 KQRV-LVILDDLWVQ-I--ELDRVGIPYGNDGCKFLLTSRS  292 (333)
Q Consensus       256 ~k~~-LlVlDdv~~~-~--~~~~l~~~~~~~g~~vivTTr~  292 (333)
                      ..+. +||+||+... .  .++.+..-....+.+||++.+.
T Consensus        85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~  125 (131)
T PF13401_consen   85 RRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP  125 (131)
T ss_dssp             HCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred             hcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence            8665 9999998654 1  2233311122456777777654

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.89  E-value=2.6e-09  Score=92.43  Aligned_cols=142  Identities=20%  Similarity=0.258  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C------------CeEEEEEeC-CCC------
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F------------DEVAMAVVS-QTP------  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f------------~~~~wv~v~-~~~------  220 (333)
                      ...++.+...+.+++  +++|+|+||+|||||++.+.+...+...   +            ...+. ++. +..      
T Consensus        34 ~~il~~vs~~i~~Ge--~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~~~~~~~~~~~  110 (236)
T cd03267          34 VEALKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG-VVFGQKTQLWWDL  110 (236)
T ss_pred             eeeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEE-EEcCCccccCCCC
Confidence            345566666666777  9999999999999999999976543210   0            00111 122 211      


Q ss_pred             CHHH------------------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889          221 SITK------------------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-----  271 (333)
Q Consensus       221 ~~~~------------------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----  271 (333)
                      +..+                  ....+++.+++.....     .+ .+.....+...+..++-+++||++.+..|     
T Consensus       111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~  190 (236)
T cd03267         111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE  190 (236)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            1111                  1123344444431111     12 23345568888888999999999987754     


Q ss_pred             -hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889          272 -LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       272 -~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                       +..+..... ..|..||++||+.+.+..++++.+.+.
T Consensus       191 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~  228 (236)
T cd03267         191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID  228 (236)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence             222222222 236789999999998877777765553

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.88  E-value=2.6e-09  Score=90.91  Aligned_cols=141  Identities=16%  Similarity=0.214  Sum_probs=84.5

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------C--eEEEEEeCCCC------CHH-
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------D--EVAMAVVSQTP------SIT-  223 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~--~~~wv~v~~~~------~~~-  223 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...+...   +        .  ......+++.+      +.. 
T Consensus        14 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   91 (213)
T cd03301          14 TALDDLNLDIADGE--FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD   91 (213)
T ss_pred             eeeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence            34555555566777  8999999999999999999987543210   0        0  00122233321      111 


Q ss_pred             -----------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------h
Q 046889          224 -----------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------R  274 (333)
Q Consensus       224 -----------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~  274 (333)
                                       .....+++.+++...     ...+ .+.....+.+.+..++-+++||++.+..|..      .
T Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~  171 (213)
T cd03301          92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA  171 (213)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                             112334555555311     1122 2344556888888899999999998775422      2


Q ss_pred             ccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          275 VGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       275 l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +...... .|..||++||+...+..++++.+.+
T Consensus       172 ~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l  204 (213)
T cd03301         172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVM  204 (213)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence            2222222 3778999999998877776666444

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.88  E-value=2.7e-09  Score=92.09  Aligned_cols=140  Identities=16%  Similarity=0.237  Sum_probs=84.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCC------CH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTP------SI  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~------~~  222 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+...+...   +.             .....++++.+      +.
T Consensus        15 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (232)
T cd03218          15 VVNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV   92 (232)
T ss_pred             eeccceeEecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence            5566666666777  9999999999999999999876543210   00             00012223322      11


Q ss_pred             H------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-----
Q 046889          223 T------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-----  273 (333)
Q Consensus       223 ~------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-----  273 (333)
                      .                  .....+++.+++....     ..+ .+...-.+...+..++-+++||++.+..|..     
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~  172 (232)
T cd03218          93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI  172 (232)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence            1                  1122344455543211     111 2344556888888899999999998765422     


Q ss_pred             -hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 -RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 -~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                       .+.......|..||++||+.+.+..++++.+.+
T Consensus       173 ~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  206 (232)
T cd03218         173 QKIIKILKDRGIGVLITDHNVRETLSITDRAYII  206 (232)
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence             222222234778999999998777777766444

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.88  E-value=3.9e-09  Score=91.18  Aligned_cols=145  Identities=16%  Similarity=0.264  Sum_probs=91.8

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCeEEEEEeCCCC-----------------
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDEVAMAVVSQTP-----------------  220 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~~-----------------  220 (333)
                      |+-..++++...+.+++  ++++.||+|+|||||++.|.+-..++.   .|....|..+++-.                 
T Consensus        13 ~~~~a~~di~l~i~~Ge--~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~   90 (345)
T COG1118          13 GAFGALDDISLDIKSGE--LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP   90 (345)
T ss_pred             ccccccccceeeecCCc--EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence            33334445565666788  999999999999999999998765543   23444444433310                 


Q ss_pred             ----------------------CHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHHccCceEEEEeCCCCchh-
Q 046889          221 ----------------------SITKIQDEIAGWLGIKELPDN------DELVRASLLCKRIEKQRVLVILDDLWVQIE-  271 (333)
Q Consensus       221 ----------------------~~~~~~~~i~~~l~~~~~~~~------~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-  271 (333)
                                            ....-..+++..+.+......      ..+...-.+.+.|.-.+-+|+||++....| 
T Consensus        91 HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa  170 (345)
T COG1118          91 HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA  170 (345)
T ss_pred             cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhH
Confidence                                  111222333444444322211      233445678888889999999999987643 


Q ss_pred             -----hhhccCCCCCC-CcEEEEeeCChHHHhhcccceEecC
Q 046889          272 -----LDRVGIPYGND-GCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       272 -----~~~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                           +......+... |...+++|||.+.+..++++...|+
T Consensus       171 ~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~  212 (345)
T COG1118         171 KVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN  212 (345)
T ss_pred             HHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEec
Confidence                 33333333333 8889999999999888888775544

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.88  E-value=3.8e-09  Score=92.40  Aligned_cols=140  Identities=17%  Similarity=0.259  Sum_probs=84.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------EEEEEeCCCC------CHH-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------VAMAVVSQTP------SIT-----  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------~~wv~v~~~~------~~~-----  223 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+..++...   |+.       ....++.+.+      ++.     
T Consensus        16 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~   93 (255)
T PRK11248         16 ALEDINLTLESGE--LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAF   93 (255)
T ss_pred             eEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHh
Confidence            4555555566777  9999999999999999999977543211   100       0011223321      111     


Q ss_pred             -------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCC
Q 046889          224 -------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIP  278 (333)
Q Consensus       224 -------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~  278 (333)
                                   .....+++.+++.....     .+ .+.....+...+..++-+++||++.+..|.      ..+...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  173 (255)
T PRK11248         94 GLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK  173 (255)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence                         11234455555532111     12 234455678888889999999999876442      222222


Q ss_pred             C-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          279 Y-GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       279 ~-~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      . ...|..||++||+.+.+..++++.+.|
T Consensus       174 ~~~~~g~tviivsH~~~~~~~~~d~i~~l  202 (255)
T PRK11248        174 LWQETGKQVLLITHDIEEAVFMATELVLL  202 (255)
T ss_pred             HHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            2 223778999999999877777666444

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.87  E-value=1.3e-08  Score=88.48  Aligned_cols=128  Identities=19%  Similarity=0.299  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCC------CHHHH--------------HHHHHHHhCCC
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTP------SITKI--------------QDEIAGWLGIK  236 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~------~~~~~--------------~~~i~~~l~~~  236 (333)
                      +++|+|+||+|||||++.+.+...+...   ++.....++++..      +..+.              ...+++.+++.
T Consensus        27 ~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~  106 (246)
T cd03237          27 VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIE  106 (246)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCH
Confidence            8999999999999999999987654321   1111112222221      11111              23345555553


Q ss_pred             CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889          237 EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYG-NDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       237 ~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      ..     ...+ -+.....+...|..++-+++||++.+..|...      +..... ..|..||++||+...+..+++..
T Consensus       107 ~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i  186 (246)
T cd03237         107 QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL  186 (246)
T ss_pred             HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence            11     1122 33445668888899999999999987755322      222222 23778999999999888777766


Q ss_pred             EecC
Q 046889          304 VDVR  307 (333)
Q Consensus       304 ~~l~  307 (333)
                      +.+.
T Consensus       187 ~~l~  190 (246)
T cd03237         187 IVFE  190 (246)
T ss_pred             EEEc
Confidence            4443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.87  E-value=2.8e-09  Score=91.37  Aligned_cols=140  Identities=18%  Similarity=0.258  Sum_probs=83.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--------eEEEEEeCCCC------CHH----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--------EVAMAVVSQTP------SIT----  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--------~~~wv~v~~~~------~~~----  223 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++        ......+++.+      +..    
T Consensus        15 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~   92 (223)
T TIGR03740        15 AVNNISLTVPKNS--VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLK   92 (223)
T ss_pred             EEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHH
Confidence            3444444455677  9999999999999999999976543211   00        01122233322      111    


Q ss_pred             ----------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCC
Q 046889          224 ----------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGN  281 (333)
Q Consensus       224 ----------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~  281 (333)
                                .....+++.+++.....     .+ .+.....+...+..++-+++||++.+..|..      .+......
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~  172 (223)
T TIGR03740        93 VHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE  172 (223)
T ss_pred             HHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH
Confidence                      12234455555532111     12 2334456788888899999999998775422      22222233


Q ss_pred             CCcEEEEeeCChHHHhhcccceEec
Q 046889          282 DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .|..||++||+...+..++++.+.+
T Consensus       173 ~~~tiii~sH~~~~~~~~~d~i~~l  197 (223)
T TIGR03740       173 QGITVILSSHILSEVQQLADHIGII  197 (223)
T ss_pred             CCCEEEEEcCCHHHHHHhcCEEEEE
Confidence            4778999999999877766665433

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.87  E-value=2.9e-09  Score=89.05  Aligned_cols=143  Identities=15%  Similarity=0.208  Sum_probs=95.4

Q ss_pred             ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE-------------eCCCC---
Q 046889          157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV-------------VSQTP---  220 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~-------------v~~~~---  220 (333)
                      ...+|-...+++|...+.+++  +.+++|+||+||||..+.+.+-..+..  ..+.|--             .++..   
T Consensus         9 tK~Fg~k~av~~isf~v~~G~--i~GllG~NGAGKTTtfRmILglle~~~--G~I~~~g~~~~~~~~~rIGyLPEERGLy   84 (300)
T COG4152           9 TKSFGDKKAVDNISFEVPPGE--IFGLLGPNGAGKTTTFRMILGLLEPTE--GEITWNGGPLSQEIKNRIGYLPEERGLY   84 (300)
T ss_pred             hhccCceeeecceeeeecCCe--EEEeecCCCCCccchHHHHhccCCccC--ceEEEcCcchhhhhhhhcccChhhhccC
Confidence            345666677778888777788  999999999999999999998876432  1222321             11110   


Q ss_pred             ---C------------------HHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHHHHccCceEEEEeCCCCchh--
Q 046889          221 ---S------------------ITKIQDEIAGWLGIKELPDNDELV------RASLLCKRIEKQRVLVILDDLWVQIE--  271 (333)
Q Consensus       221 ---~------------------~~~~~~~i~~~l~~~~~~~~~~~~------~~~~l~~~l~~k~~LlVlDdv~~~~~--  271 (333)
                         .                  ...-+...++++.+.........+      +...+...+-.++-|+|||++.+..|  
T Consensus        85 ~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPV  164 (300)
T COG4152          85 PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV  164 (300)
T ss_pred             ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChh
Confidence               1                  122344556666665443333333      33345566667899999998876543  


Q ss_pred             ----hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          272 ----LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       272 ----~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                          ++...+...+.|..||+.||..+-++.+|++.
T Consensus       165 N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~l  200 (300)
T COG4152         165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRL  200 (300)
T ss_pred             hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhh
Confidence                56666667788999999999988777666654

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.87  E-value=2.7e-09  Score=91.33  Aligned_cols=141  Identities=15%  Similarity=0.257  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------EEEEEeCCCC------CHH-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------VAMAVVSQTP------SIT-----  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------~~wv~v~~~~------~~~-----  223 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++.       ....++++.+      +..     
T Consensus        19 il~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~   96 (220)
T cd03293          19 ALEDISLSVEEGE--FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL   96 (220)
T ss_pred             EEeceeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence            4455555566677  9999999999999999999987543211   100       0112223321      111     


Q ss_pred             -------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCC
Q 046889          224 -------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIP  278 (333)
Q Consensus       224 -------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~  278 (333)
                                   .....+++.+++...     ...+ -+.....+.+.+..++-+++||++.+..|..      .+...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  176 (220)
T cd03293          97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD  176 (220)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence                         112334555555311     1122 3345567888888899999999998775422      22222


Q ss_pred             C-CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          279 Y-GNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       279 ~-~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      . ...|..||++||+......++++.+.|+
T Consensus       177 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  206 (220)
T cd03293         177 IWRETGKTVLLVTHDIDEAVFLADRVVVLS  206 (220)
T ss_pred             HHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            2 2236789999999997777767665553

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.87  E-value=2.8e-09  Score=95.70  Aligned_cols=140  Identities=16%  Similarity=0.237  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC------CH
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP------SI  222 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~------~~  222 (333)
                      ...++.+...+..|+  +++|+|+||+|||||++.+.+...+...   +.           .....++++.+      +.
T Consensus        17 ~~~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   94 (303)
T TIGR01288        17 KVVVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV   94 (303)
T ss_pred             eEEEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence            345666766677787  9999999999999999999976543210   00           00112233322      11


Q ss_pred             HH------------------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h
Q 046889          223 TK------------------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L  272 (333)
Q Consensus       223 ~~------------------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~  272 (333)
                      .+                  ....+++.+++.....     .+ .+...-.+...|..++-+++||++.+..|      +
T Consensus        95 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l  174 (303)
T TIGR01288        95 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI  174 (303)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence            11                  1123344455432111     11 23345568888888999999999987744      2


Q ss_pred             hhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      ..+.......|..||++||+...+..++++.+
T Consensus       175 ~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~  206 (303)
T TIGR01288       175 WERLRSLLARGKTILLTTHFMEEAERLCDRLC  206 (303)
T ss_pred             HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence            22222223347789999999998877766653

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.87  E-value=1.9e-09  Score=92.25  Aligned_cols=135  Identities=13%  Similarity=0.164  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCC-
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ-----TPSITKIQDEIAGWLGIKE-  237 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~-  237 (333)
                      ..++++...+..++  +++|+|.+|+|||||++.+..-.++..   ..+++.-.+     .....+...+++..+++.. 
T Consensus        27 ~avd~Vsf~i~~ge--~~glVGESG~GKSTlgr~i~~L~~pt~---G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~  101 (268)
T COG4608          27 KAVDGVSFSIKEGE--TLGLVGESGCGKSTLGRLILGLEEPTS---GEILFEGKDITKLSKEERRERVLELLEKVGLPEE  101 (268)
T ss_pred             EEecceeEEEcCCC--EEEEEecCCCCHHHHHHHHHcCcCCCC---ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHH
Confidence            34556666666777  999999999999999999998876432   223322111     1123345667777777641 


Q ss_pred             ------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889          238 ------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       238 ------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                            ..-...+...-.+.+.|.-++-++|.|++.+..+.      ..+...+. ..|-..++.||+..++..+++..
T Consensus       102 ~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri  180 (268)
T COG4608         102 FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRI  180 (268)
T ss_pred             HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccE
Confidence                  12223445567799999999999999999877542      12211122 22778999999999999988876

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.86  E-value=2.2e-09  Score=91.65  Aligned_cols=140  Identities=12%  Similarity=0.247  Sum_probs=84.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP-----  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~-----  220 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+...+...   |+                ......+++.+     
T Consensus        19 il~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   96 (218)
T cd03255          19 ALKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD   96 (218)
T ss_pred             EEeeeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence            4555555566777  9999999999999999999877543210   00                00112222221     


Q ss_pred             -CH------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          221 -SI------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       221 -~~------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                       +.                  ......+++.+++.....     .+ -+.....+.+.+..++-+++||++.+..|    
T Consensus        97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~  176 (218)
T cd03255          97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG  176 (218)
T ss_pred             CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence             11                  112334556666542111     12 23445568888888999999999987644    


Q ss_pred             --hhhccCCCCC-CCcEEEEeeCChHHHhhcccceEecC
Q 046889          272 --LDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       272 --~~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                        +..+...... .|..||++||+...+. ++++.+.|+
T Consensus       177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~  214 (218)
T cd03255         177 KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELR  214 (218)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEee
Confidence              2222222223 3778999999998876 666655553

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.86  E-value=2.2e-08  Score=93.70  Aligned_cols=145  Identities=18%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             ccccccccchHHHHHH---HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKD---IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI  229 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  229 (333)
                      |.....++|++..+..   |...+..+....+.|+||.|+||||||+.+.+...  ..     |+.++....-...++.+
T Consensus         8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~-----~~~l~a~~~~~~~ir~i   80 (413)
T PRK13342          8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--AP-----FEALSAVTSGVKDLREV   80 (413)
T ss_pred             CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----EEEEecccccHHHHHHH
Confidence            4455678898888666   77877777777889999999999999999988653  22     33332221111112222


Q ss_pred             HHHhCCCCCCCCCHHHHHHHHHHH-HccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEE--eeCChHH--Hhhccc-
Q 046889          230 AGWLGIKELPDNDELVRASLLCKR-IEKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLL--TSRSRAA--CNQMQA-  301 (333)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~viv--TTr~~~v--~~~~~~-  301 (333)
                      ++.                 .... ..+++.+|++||++..  ...+.+ ++.-..|..+++  ||.+...  ...+.. 
T Consensus        81 i~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~L-L~~le~~~iilI~att~n~~~~l~~aL~SR  142 (413)
T PRK13342         81 IEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDAL-LPHVEDGTITLIGATTENPSFEVNPALLSR  142 (413)
T ss_pred             HHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHH-HHHhhcCcEEEEEeCCCChhhhccHHHhcc
Confidence            221                 1111 1357789999999865  233333 232233554444  3455432  111222 


Q ss_pred             -ceEecCCCCHHHHHHHHHhhc
Q 046889          302 -HIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       302 -~~~~l~~L~~~e~~~lf~~~a  322 (333)
                       ..+.+.+++.++.+.++.+..
T Consensus       143 ~~~~~~~~ls~e~i~~lL~~~l  164 (413)
T PRK13342        143 AQVFELKPLSEEDIEQLLKRAL  164 (413)
T ss_pred             ceeeEeCCCCHHHHHHHHHHHH
Confidence             338999999999999998864

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.86  E-value=3.2e-09  Score=93.65  Aligned_cols=140  Identities=13%  Similarity=0.202  Sum_probs=84.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP-----  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~-----  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++                .....++++.+     
T Consensus        39 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~  116 (269)
T cd03294          39 GVNDVSLDVREGE--IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH  116 (269)
T ss_pred             EeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC
Confidence            4455555556677  9999999999999999999977543210   00                00112223321     


Q ss_pred             -CHH------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          221 -SIT------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       221 -~~~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                       +..                  .....+++.+++...     ...+ .+.....+.+.+..++-+++||++.+..|..  
T Consensus       117 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~  196 (269)
T cd03294         117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR  196 (269)
T ss_pred             CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence             111                  112334555555311     1222 3444566888888999999999998775422  


Q ss_pred             ----hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ----RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ----~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          .+..... ..|..||++||+.+.+..+++..+.|
T Consensus       197 ~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l  234 (269)
T cd03294         197 REMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIM  234 (269)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence                2222222 23778999999998877766666433

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.85  E-value=1.9e-09  Score=93.18  Aligned_cols=140  Identities=16%  Similarity=0.203  Sum_probs=84.2

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+...+...   ++.               ....++++.+      
T Consensus        15 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (235)
T cd03261          15 VLKGVDLDVRRGE--ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL   92 (235)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence            4455555566777  9999999999999999999976543210   000               0011223321      


Q ss_pred             CHH-------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          221 SIT-------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       221 ~~~-------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                      +..                   .....+++.+++.....     .+ .+.....+.+.+..++-+++||++.+..|..  
T Consensus        93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~  172 (235)
T cd03261          93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS  172 (235)
T ss_pred             cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence            111                   11223455555532211     12 2344566888888899999999998775422  


Q ss_pred             ----hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ----RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ----~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          .+...... .|..||++||+.+.+..++++.+.|
T Consensus       173 ~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l  210 (235)
T cd03261         173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVL  210 (235)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEE
Confidence                22222222 3778999999999877777766444

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.85  E-value=6.3e-09  Score=88.64  Aligned_cols=142  Identities=13%  Similarity=0.197  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC-----
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP-----  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~-----  220 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++.               ....++++.+     
T Consensus        16 ~il~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   93 (214)
T TIGR02673        16 AALHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD   93 (214)
T ss_pred             eeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence            35566666667777  9999999999999999999876532110   000               0011223221     


Q ss_pred             -CHH------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          221 -SIT------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       221 -~~~------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                       +..                  .....+++.+++....     ..+ .+.....+.+.|..++-+++||++.+..|..  
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~  173 (214)
T TIGR02673        94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS  173 (214)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence             111                  1123445555553211     112 2344567888888899999999998775422  


Q ss_pred             ----hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          274 ----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       274 ----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                          .+.......|..||++||+......++++.+.+.
T Consensus       174 ~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~  211 (214)
T TIGR02673       174 ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD  211 (214)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEec
Confidence                2222222347789999999998877777665543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.85  E-value=2.7e-09  Score=87.77  Aligned_cols=129  Identities=19%  Similarity=0.297  Sum_probs=79.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-----------------EeCCCCCH---HH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-----------------VVSQTPSI---TK  224 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-----------------~v~~~~~~---~~  224 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+.   ...+++                 ++++.+..   ..
T Consensus        15 ~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t   89 (173)
T cd03230          15 ALDDISLTVEKGE--IYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLT   89 (173)
T ss_pred             eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCc
Confidence            3445555556677  99999999999999999998865421   122221                 12222110   01


Q ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhh
Q 046889          225 IQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQ  298 (333)
Q Consensus       225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~  298 (333)
                      +.+.+.         -...+...-.+.+.+..++-++++|++.+..|..      .+.......|..||++||+......
T Consensus        90 v~~~~~---------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~  160 (173)
T cd03230          90 VRENLK---------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER  160 (173)
T ss_pred             HHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence            111111         1123344567888899999999999998775422      2222223337789999999998877


Q ss_pred             cccceEecC
Q 046889          299 MQAHIVDVR  307 (333)
Q Consensus       299 ~~~~~~~l~  307 (333)
                      ++++.+.++
T Consensus       161 ~~d~i~~l~  169 (173)
T cd03230         161 LCDRVAILN  169 (173)
T ss_pred             hCCEEEEEe
Confidence            777665543

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.85  E-value=4.6e-09  Score=91.67  Aligned_cols=141  Identities=11%  Similarity=0.181  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--------------------eEEEEEeCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--------------------EVAMAVVSQTP  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--------------------~~~wv~v~~~~  220 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++                    .....++++.+
T Consensus        17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~   94 (250)
T PRK11264         17 TVLHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF   94 (250)
T ss_pred             eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence            35566666666777  8999999999999999999876532110   00                    00112222221


Q ss_pred             ------CHHH-------------------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889          221 ------SITK-------------------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQ  269 (333)
Q Consensus       221 ------~~~~-------------------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~  269 (333)
                            +..+                   ....+++.+++.....     .+ .+.....+...+..++-+++||++.+.
T Consensus        95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~  174 (250)
T PRK11264         95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA  174 (250)
T ss_pred             ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence                  1111                   1223444455532111     11 234455688888889999999999877


Q ss_pred             hhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          270 IELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       270 ~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .|..      .+.......|..||++||+...+..++++.+.+
T Consensus       175 LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l  217 (250)
T PRK11264        175 LDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFM  217 (250)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            5422      222222334778999999999877766666444

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.84  E-value=7.8e-10  Score=90.00  Aligned_cols=134  Identities=13%  Similarity=0.166  Sum_probs=80.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC--CCCHHHHHHHHHHHhCCCCCCCCC
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ--TPSITKIQDEIAGWLGIKELPDND  242 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~i~~~l~~~~~~~~~  242 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+.   ...+++.-..  ..+.....+   ..++. ...-..
T Consensus        15 vl~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~   85 (163)
T cd03216          15 ALDGVSLSVRRGE--VHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARR---AGIAM-VYQLSV   85 (163)
T ss_pred             EEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHh---cCeEE-EEecCH
Confidence            3444445556677  99999999999999999999876432   2333332111  111111111   11111 001222


Q ss_pred             HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          243 ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       243 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .+.....+.+.+..++-+++||++.+..|..      .+.......|..||++||+.+....++++.+.+.
T Consensus        86 G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~  156 (163)
T cd03216          86 GERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLR  156 (163)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            4455667888888999999999998764422      2222223347789999999987777666665443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.84  E-value=4.9e-09  Score=88.61  Aligned_cols=140  Identities=16%  Similarity=0.221  Sum_probs=84.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-----------EEEEeCCCC------CH--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-----------AMAVVSQTP------SI--  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-----------~wv~v~~~~------~~--  222 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |+..           ....+.+.+      +.  
T Consensus        16 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e   93 (204)
T PRK13538         16 LFSGLSFTLNAGE--LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALE   93 (204)
T ss_pred             EEecceEEECCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHH
Confidence            4555555666777  9999999999999999999976543211   1000           001112211      11  


Q ss_pred             -------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccC
Q 046889          223 -------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGI  277 (333)
Q Consensus       223 -------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~  277 (333)
                                   ......+++.+++.....     .+ .+.....+...+..++-+++||++.+..|..      .+..
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  173 (204)
T PRK13538         94 NLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA  173 (204)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence                         112234555555532111     11 2344566888888899999999998765422      2212


Q ss_pred             CCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          278 PYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       278 ~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .....|..||++||+......+....|.+
T Consensus       174 ~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        174 QHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             HHHHCCCEEEEEecChhhhccCCceEEec
Confidence            22234678999999999888777655554

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.83  E-value=2e-08  Score=99.04  Aligned_cols=142  Identities=18%  Similarity=0.232  Sum_probs=88.5

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-eEEEEEeCCCC--------CHH----
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-EVAMAVVSQTP--------SIT----  223 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-~~~wv~v~~~~--------~~~----  223 (333)
                      +|....++.+...+..|+  +++|+|+||+|||||++.+.+...+...   +. .....++++..        ++.    
T Consensus       322 y~~~~il~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~  399 (638)
T PRK10636        322 YGDRIILDSIKLNLVPGS--RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLA  399 (638)
T ss_pred             eCCeeeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHH
Confidence            344456777777777777  9999999999999999999987643221   11 11122333321        110    


Q ss_pred             --------HHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCCCC
Q 046889          224 --------KIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYGND  282 (333)
Q Consensus       224 --------~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~~~  282 (333)
                              .....++..++... .     ...+ .+...-.|...+..++-+|+||++.+..|...      +...+  .
T Consensus       400 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~  477 (638)
T PRK10636        400 RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E  477 (638)
T ss_pred             HhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C
Confidence                    11234555555531 1     1112 23345568888888999999999998865332      22222  2


Q ss_pred             CcEEEEeeCChHHHhhcccceEec
Q 046889          283 GCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       283 g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      | .||++||+...+..++++.+.+
T Consensus       478 g-tvi~vSHd~~~~~~~~d~i~~l  500 (638)
T PRK10636        478 G-ALVVVSHDRHLLRSTTDDLYLV  500 (638)
T ss_pred             C-eEEEEeCCHHHHHHhCCEEEEE
Confidence            4 6999999999988877766433

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.83  E-value=4e-09  Score=89.45  Aligned_cols=140  Identities=21%  Similarity=0.270  Sum_probs=83.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C---C-------eEEEEEeCCCCC------HH--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F---D-------EVAMAVVSQTPS------IT--  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f---~-------~~~wv~v~~~~~------~~--  223 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   +   +       ......+++.+.      ..  
T Consensus        15 ~l~~~~~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   92 (208)
T cd03268          15 VLDDISLHVKKGE--IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAREN   92 (208)
T ss_pred             eEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHH
Confidence            4445555555677  9999999999999999999876432210   0   0       001122333221      11  


Q ss_pred             ------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC
Q 046889          224 ------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY  279 (333)
Q Consensus       224 ------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~  279 (333)
                                  .....+++.+++....     ..+ .+...-.+...+..++-+++||++.+..|..      .+....
T Consensus        93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  172 (208)
T cd03268          93 LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL  172 (208)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence                        1123345555553211     112 2334456788888889999999998775422      222222


Q ss_pred             CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          280 GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       280 ~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ...|..||++||+...+..++++.+.+
T Consensus       173 ~~~~~tii~~tH~~~~~~~~~d~v~~l  199 (208)
T cd03268         173 RDQGITVLISSHLLSEIQKVADRIGII  199 (208)
T ss_pred             HHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence            234778999999999887777766544

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.82  E-value=4.8e-09  Score=90.59  Aligned_cols=140  Identities=14%  Similarity=0.242  Sum_probs=84.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   |+               .....++++.+      
T Consensus        20 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (233)
T cd03258          20 ALKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR   97 (233)
T ss_pred             eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence            4555665666777  9999999999999999999877543211   00               00012223321      


Q ss_pred             CHH------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889          221 SIT------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD---  273 (333)
Q Consensus       221 ~~~------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---  273 (333)
                      +..                  .....+++.+++....     ..+ .+.....+...+..++-+++||++.+..|..   
T Consensus        98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~  177 (233)
T cd03258          98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ  177 (233)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence            111                  1123345555553211     112 2344566788888899999999998775422   


Q ss_pred             ---hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ---RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ---~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         .+...... .|..||++||+.+.+..++++.+.+
T Consensus       178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l  214 (233)
T cd03258         178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVM  214 (233)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence               22222223 3788999999999877777766444

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.82  E-value=4.3e-09  Score=90.24  Aligned_cols=141  Identities=13%  Similarity=0.158  Sum_probs=84.4

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE------------eCCCCCHH-----
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV------------VSQTPSIT-----  223 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~------------v~~~~~~~-----  223 (333)
                      |....++.+...+..++  +++|+|++|+|||||++.+.+...+..   ..+|+.            +....++.     
T Consensus        33 ~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~  107 (224)
T cd03220          33 GEFWALKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSLLGLGGGFNPELTGRENIYL  107 (224)
T ss_pred             CCeEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEchhhcccccCCCCCcHHHHHHH
Confidence            33445555555566677  999999999999999999998654321   111110            00111111     


Q ss_pred             -------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCC
Q 046889          224 -------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIP  278 (333)
Q Consensus       224 -------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~  278 (333)
                                   .....+++.+++....     ..+ .+.....+.+.+..++-+++||++.+..|..      .+...
T Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~  187 (224)
T cd03220         108 NGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE  187 (224)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence                         1123344444543211     112 2334556888888899999999998775432      22222


Q ss_pred             CCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          279 YGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       279 ~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ....|..||++||+.+.+..++++.+.+
T Consensus       188 ~~~~~~tiii~sH~~~~~~~~~d~i~~l  215 (224)
T cd03220         188 LLKQGKTVILVSHDPSSIKRLCDRALVL  215 (224)
T ss_pred             HHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            2233678999999999887776666444

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.82  E-value=3.6e-09  Score=90.65  Aligned_cols=141  Identities=14%  Similarity=0.205  Sum_probs=81.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC-----eEEEEEeCCCC------CH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD-----EVAMAVVSQTP------SI  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~-----~~~wv~v~~~~------~~  222 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...           ..     .....++++.+      +.
T Consensus        15 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   92 (222)
T cd03224          15 ILFGVSLTVPEGE--IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV   92 (222)
T ss_pred             EeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence            4455555556677  9999999999999999999876542210           00     01122333332      11


Q ss_pred             H----------------HHHHHHHHHh-CCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889          223 T----------------KIQDEIAGWL-GIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD  273 (333)
Q Consensus       223 ~----------------~~~~~i~~~l-~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~  273 (333)
                      .                .....+++.+ +....     ...+ .+.....+.+.+..++-+++||++.+..|      +.
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  172 (222)
T cd03224          93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF  172 (222)
T ss_pred             HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence            1                0112233333 12111     1111 23345567777888889999999987644      22


Q ss_pred             hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          274 RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       274 ~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .+.......|..||++||+...+..++++.+.+.
T Consensus       173 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  206 (222)
T cd03224         173 EAIRELRDEGVTILLVEQNARFALEIADRAYVLE  206 (222)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEee
Confidence            2222222347889999999998777777665443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.82  E-value=2.3e-08  Score=81.54  Aligned_cols=136  Identities=13%  Similarity=0.140  Sum_probs=80.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCCCH--HHHHHHHHHHhCCCCC
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTPSI--TKIQDEIAGWLGIKEL  238 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~~~--~~~~~~i~~~l~~~~~  238 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++. ....++++.+..  ..+.+++.-.   ...
T Consensus        16 ~l~~i~l~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~   90 (166)
T cd03223          16 LLKDLSFEIKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDD   90 (166)
T ss_pred             eeecCeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCC
Confidence            3444555555677  9999999999999999999987653221   111 112234444322  1223332210   111


Q ss_pred             CCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          239 PDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       239 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .-...+..+..+.+.+..++-+++||++.+..|....   .-.+...+..+|++||+..... ++++.+.+
T Consensus        91 ~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~-~~d~i~~l  160 (166)
T cd03223          91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWK-FHDRVLDL  160 (166)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHh-hCCEEEEE
Confidence            2223455667788888999999999999876542221   0001111567999999988754 55655554

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.82  E-value=9.9e-09  Score=88.07  Aligned_cols=141  Identities=15%  Similarity=0.183  Sum_probs=84.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C-------C-------------eEEEEEeCCCCC
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F-------D-------------EVAMAVVSQTPS  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f-------~-------------~~~wv~v~~~~~  221 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   |       +             ......+++.+.
T Consensus        23 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~  100 (224)
T TIGR02324        23 VLKNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR  100 (224)
T ss_pred             EEecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence            4555665666777  9999999999999999999877543210   1       0             000112223221


Q ss_pred             ------H------------------HHHHHHHHHHhCCCCC------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889          222 ------I------------------TKIQDEIAGWLGIKEL------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQI  270 (333)
Q Consensus       222 ------~------------------~~~~~~i~~~l~~~~~------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~  270 (333)
                            .                  .....++++.+++...      ...+ .+.....+.+.+..++-+++||++.+..
T Consensus       101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L  180 (224)
T TIGR02324       101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL  180 (224)
T ss_pred             cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence                  0                  1122334555554321      1112 2344556778888888999999998765


Q ss_pred             hh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          271 EL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       271 ~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      |.      ..+.......|..||++||+...+..+++..+.+.
T Consensus       181 D~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       181 DAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence            42      22222223347789999999998877777666554

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.81  E-value=1.8e-08  Score=82.78  Aligned_cols=135  Identities=13%  Similarity=0.183  Sum_probs=76.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC--CCCHHHHHHHHHHHhCCC-CCC--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ--TPSITKIQDEIAGWLGIK-ELP--  239 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~i~~~l~~~-~~~--  239 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+..   ..+++.-..  ........+.+ ..+... ...  
T Consensus        17 ~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~   90 (173)
T cd03246          17 VLRNVSFSIEPGE--SLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGADISQWDPNELGDHV-GYLPQDDELFSG   90 (173)
T ss_pred             ceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEEcccCCHHHHHhhe-EEECCCCccccC
Confidence            3444444455677  999999999999999999998764321   222211000  00111110000 000000 000  


Q ss_pred             ------CCCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          240 ------DNDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       240 ------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                            -...+...-.+.+.+..++-+++||++.+..|.      ..+.......|..||++||+..... .+++.+.+
T Consensus        91 tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l  168 (173)
T cd03246          91 SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVL  168 (173)
T ss_pred             cHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEE
Confidence                  112334566788888899999999999876442      2222222334778999999998875 45555544

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.81  E-value=2.2e-08  Score=85.24  Aligned_cols=141  Identities=13%  Similarity=0.208  Sum_probs=84.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------  220 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |+.               .....+++.+      
T Consensus        16 ~l~~~sl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~   93 (214)
T cd03292          16 ALDGINISISAGE--FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR   93 (214)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence            4445555555677  9999999999999999999977543210   000               0011222221      


Q ss_pred             CHH------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889          221 SIT------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-----  271 (333)
Q Consensus       221 ~~~------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----  271 (333)
                      +..                  ..+..+++.+++....     ..+ .+.....+.+.+..++-+++||++.+..|     
T Consensus        94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  173 (214)
T cd03292          94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW  173 (214)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence            111                  1123445555553211     112 23445568888888999999999987644     


Q ss_pred             -hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          272 -LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       272 -~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                       +..+.......|..||++||+......++++.+.++
T Consensus       174 ~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~  210 (214)
T cd03292         174 EIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALE  210 (214)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence             222222223347789999999998877666665543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.81  E-value=4.8e-09  Score=91.49  Aligned_cols=141  Identities=16%  Similarity=0.183  Sum_probs=84.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCCC--------H----------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTPS--------I----------  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~~--------~----------  222 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+++...+...   +.. ....++++.+.        .          
T Consensus        19 vl~~vs~~i~~Ge--~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~   96 (251)
T PRK09544         19 VLSDVSLELKPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGT   96 (251)
T ss_pred             EEEeEEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccc
Confidence            3444444455677  9999999999999999999987543221   110 01112222211        1          


Q ss_pred             -HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCCC-CCcEEEE
Q 046889          223 -TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYGN-DGCKFLL  288 (333)
Q Consensus       223 -~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~~-~g~~viv  288 (333)
                       ..-...+++.+++....     ..+ .+.....+...+..++-+++||++.+..|...      +...... .|..||+
T Consensus        97 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii  176 (251)
T PRK09544         97 KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM  176 (251)
T ss_pred             cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence             11223445556553211     112 23445568888888999999999987754322      2122222 2778999


Q ss_pred             eeCChHHHhhcccceEecC
Q 046889          289 TSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       289 TTr~~~v~~~~~~~~~~l~  307 (333)
                      +||+.+.+..++++.+.+.
T Consensus       177 vsH~~~~i~~~~d~i~~l~  195 (251)
T PRK09544        177 VSHDLHLVMAKTDEVLCLN  195 (251)
T ss_pred             EecCHHHHHHhCCEEEEEC
Confidence            9999998877777664443

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.81  E-value=9.4e-09  Score=87.47  Aligned_cols=141  Identities=13%  Similarity=0.205  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCC------C
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTP------S  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~------~  221 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++.              ....++++.+      +
T Consensus        15 ~l~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   92 (213)
T cd03262          15 VLKGIDLTVKKGE--VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLT   92 (213)
T ss_pred             eecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCc
Confidence            4455555556677  9999999999999999999976543210   000              0011222221      1


Q ss_pred             HH-------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889          222 IT-------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL----  272 (333)
Q Consensus       222 ~~-------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----  272 (333)
                      ..                   .....+++.+++...     ...+ .+...-.+.+.+..++-+++||++.+..|.    
T Consensus        93 ~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~  172 (213)
T cd03262          93 VLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG  172 (213)
T ss_pred             HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence            10                   112334455554311     1112 334455678888888999999999876442    


Q ss_pred             --hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          273 --DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       273 --~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                        ..+.......|..||++||+......++++.+.++
T Consensus       173 ~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~  209 (213)
T cd03262         173 EVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMD  209 (213)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence              22222222347789999999998877777665543

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.81  E-value=7.4e-09  Score=102.01  Aligned_cols=146  Identities=17%  Similarity=0.225  Sum_probs=88.1

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-EEEEeCCCC-----CH-H------
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-AMAVVSQTP-----SI-T------  223 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-~wv~v~~~~-----~~-~------  223 (333)
                      +|....++.+...+..|+  +++|+|+||+|||||++.+.+...+...   +... ...++.+..     .. .      
T Consensus        11 ~g~~~~l~~vs~~i~~Ge--~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~   88 (638)
T PRK10636         11 RGVRVLLDNATATINPGQ--KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGD   88 (638)
T ss_pred             eCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhh
Confidence            454556777777777788  8999999999999999999987543221   1110 011122210     00 0      


Q ss_pred             --------------------------------------HHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHHHccCc
Q 046889          224 --------------------------------------KIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKRIEKQR  258 (333)
Q Consensus       224 --------------------------------------~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~l~~k~  258 (333)
                                                            .-...++..+++. ....     .+ .+.....|.+.|..++
T Consensus        89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P  168 (638)
T PRK10636         89 REYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRS  168 (638)
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCC
Confidence                                                  0112234444442 1111     11 2344667888888999


Q ss_pred             eEEEEeCCCCchhhhhcc---CCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          259 VLVILDDLWVQIELDRVG---IPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       259 ~LlVlDdv~~~~~~~~l~---~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      -+|+||++.+..|.....   --+...+..||++||+......++++.+.|.
T Consensus       169 ~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~  220 (638)
T PRK10636        169 DLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIE  220 (638)
T ss_pred             CEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEe
Confidence            999999999886533320   0011124569999999999888777765443

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.80  E-value=5.6e-09  Score=90.51  Aligned_cols=140  Identities=14%  Similarity=0.211  Sum_probs=83.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CHH--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SIT--  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~~--  223 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+...+...   ++          .....++++.+      +..  
T Consensus        17 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~   94 (239)
T cd03296          17 ALDDVSLDIPSGE--LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDN   94 (239)
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHH
Confidence            4555666666777  9999999999999999999977543210   00          00011222221      111  


Q ss_pred             --------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh----
Q 046889          224 --------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD----  273 (333)
Q Consensus       224 --------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----  273 (333)
                                          .....+++.+++....     ..+ .+.....+.+.|..++-+++||++.+..|..    
T Consensus        95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~  174 (239)
T cd03296          95 VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE  174 (239)
T ss_pred             HhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence                                1123345555553111     112 3344556788888889999999998775422    


Q ss_pred             --hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          274 --RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 --~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                        .+...... .|..||++||+.+.+..++++.+.+
T Consensus       175 l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l  210 (239)
T cd03296         175 LRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVM  210 (239)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              22222222 3678999999999877766766444

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.80  E-value=5.7e-09  Score=89.42  Aligned_cols=141  Identities=11%  Similarity=0.169  Sum_probs=84.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTPS-----  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~~-----  221 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |..               ....++++.+.     
T Consensus        17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~   94 (222)
T PRK10908         17 ALQGVTFHMRPGE--MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR   94 (222)
T ss_pred             EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc
Confidence            4455555566777  9999999999999999999876543210   000               01122333221     


Q ss_pred             -HHH------------------HHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889          222 -ITK------------------IQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD---  273 (333)
Q Consensus       222 -~~~------------------~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---  273 (333)
                       ..+                  -...+++.+++...     ...+ -+.....+.+.+..++-+++||++.+..|..   
T Consensus        95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  174 (222)
T PRK10908         95 TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE  174 (222)
T ss_pred             cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence             100                  11234455554321     1112 2344566888888899999999998775422   


Q ss_pred             ---hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          274 ---RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       274 ---~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                         .+.......|..||++||+.+....++++.+.+.
T Consensus       175 ~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  211 (222)
T PRK10908        175 GILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLS  211 (222)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence               2222222336789999999998887777665543

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.80  E-value=3.5e-09  Score=88.46  Aligned_cols=129  Identities=14%  Similarity=0.234  Sum_probs=75.4

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--------------eEEEEEeCCCC-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--------------EVAMAVVSQTP-------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--------------~~~wv~v~~~~-------  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   |+              ......+++.+       
T Consensus         7 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   84 (190)
T TIGR01166         7 VLKGLNFAAERGE--VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA   84 (190)
T ss_pred             eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence            4555555566777  9999999999999999999876543210   00              00112233332       


Q ss_pred             CHH------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889          221 SIT------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-----  271 (333)
Q Consensus       221 ~~~------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----  271 (333)
                      +..                  .....+++.+++.....     .+ .+.....+.+.+..++-+++||++.+..|     
T Consensus        85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  164 (190)
T TIGR01166        85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE  164 (190)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence            110                  01223444455432111     11 23445567888888999999999987644     


Q ss_pred             -hhhccCCCCCCCcEEEEeeCChHH
Q 046889          272 -LDRVGIPYGNDGCKFLLTSRSRAA  295 (333)
Q Consensus       272 -~~~l~~~~~~~g~~vivTTr~~~v  295 (333)
                       +..+.......|..||++||+.+.
T Consensus       165 ~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       165 QMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHHHcCCEEEEEeecccc
Confidence             222222223347789999998653

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=8.8e-09  Score=90.98  Aligned_cols=141  Identities=15%  Similarity=0.188  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCCC-----
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTPS-----  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~~-----  221 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+.+...+...   |+.              ....++++.+.     
T Consensus        15 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (271)
T PRK13638         15 PVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY   92 (271)
T ss_pred             ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence            45666666666777  9999999999999999999876543210   000              00112233211     


Q ss_pred             --HHH------------------HHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          222 --ITK------------------IQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       222 --~~~------------------~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                        ..+                  ....+++.+++....     ..+ .+.....+.+.|..++-+++||++.+..|..  
T Consensus        93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~  172 (271)
T PRK13638         93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR  172 (271)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence              110                  112234444442111     112 3344566888888999999999998775422  


Q ss_pred             ----hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          .+.......|..||++||+.+.+..++++.+.+
T Consensus       173 ~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l  209 (271)
T PRK13638        173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVL  209 (271)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence                222222234778999999999877766665433

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=6.4e-09  Score=91.98  Aligned_cols=137  Identities=12%  Similarity=0.187  Sum_probs=83.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------CH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------SI  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------~~  222 (333)
                      .++.+...+..|+  +++|+|++|+|||||++.+.+..++...   ++.            ....++.+.+       +.
T Consensus        20 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv   97 (274)
T PRK13647         20 ALKGLSLSIPEGS--KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTV   97 (274)
T ss_pred             eeeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcH
Confidence            5556666666777  9999999999999999999976543210   000            0112233322       00


Q ss_pred             ------------------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h
Q 046889          223 ------------------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L  272 (333)
Q Consensus       223 ------------------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~  272 (333)
                                        ......+++.+++....     ..+ .+.....+.+.|..++-+++||++.+..|      +
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l  177 (274)
T PRK13647         98 WDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL  177 (274)
T ss_pred             HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence                              01123444555553211     112 33456678888999999999999987744      2


Q ss_pred             hhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      ..+.......|..||++||+.+.+..++++.
T Consensus       178 ~~~l~~~~~~g~tili~tH~~~~~~~~~d~i  208 (274)
T PRK13647        178 MEILDRLHNQGKTVIVATHDVDLAAEWADQV  208 (274)
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence            2222222233788999999999877666665

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.80  E-value=8.4e-08  Score=75.83  Aligned_cols=121  Identities=15%  Similarity=0.111  Sum_probs=70.6

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELP  239 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~  239 (333)
                      .|++..+..+...+.......+.|+|+.|+|||||++.+++.....  -...+++...+.......... ....      
T Consensus         1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~-~~~~------   71 (151)
T cd00009           1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAEL-FGHF------   71 (151)
T ss_pred             CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHH-hhhh------
Confidence            3677888888888876445589999999999999999999887521  123445544433221111100 0000      


Q ss_pred             CCCHHHHHHHHHHHHccCceEEEEeCCCCc-----hhhhhccCCCC-----CCCcEEEEeeCChH
Q 046889          240 DNDELVRASLLCKRIEKQRVLVILDDLWVQ-----IELDRVGIPYG-----NDGCKFLLTSRSRA  294 (333)
Q Consensus       240 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~~~-----~~g~~vivTTr~~~  294 (333)
                           ............++.++++||++..     ..+........     ..++.+|+||+...
T Consensus        72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence                 0111122233457789999999853     22222211111     34788888888654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.80  E-value=2.4e-09  Score=88.46  Aligned_cols=134  Identities=13%  Similarity=0.213  Sum_probs=78.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE--------------------EeCCCCCHHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA--------------------VVSQTPSITK  224 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv--------------------~v~~~~~~~~  224 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+.   ...+.+                    .+++.+....
T Consensus        15 ~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   89 (178)
T cd03229          15 VLNDVSLNIEAGE--IVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP   89 (178)
T ss_pred             EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHHHHhhcEEEEecCCccCC
Confidence            3444555556677  99999999999999999998765432   222221                    1111111000


Q ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCC-CcEEEEeeCChHHHh
Q 046889          225 IQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGND-GCKFLLTSRSRAACN  297 (333)
Q Consensus       225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~-g~~vivTTr~~~v~~  297 (333)
                       -..+.+.+..   .-..-+.....+...+..++-+++||++.+..|.      ..+....... |..+|++||+.....
T Consensus        90 -~~t~~~~l~~---~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  165 (178)
T cd03229          90 -HLTVLENIAL---GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA  165 (178)
T ss_pred             -CCCHHHheee---cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence             0000000000   0112344556688888899999999999876442      2222222333 678999999999887


Q ss_pred             hcccceEecC
Q 046889          298 QMQAHIVDVR  307 (333)
Q Consensus       298 ~~~~~~~~l~  307 (333)
                      .++++.+.++
T Consensus       166 ~~~d~i~~l~  175 (178)
T cd03229         166 RLADRVVVLR  175 (178)
T ss_pred             HhcCEEEEEe
Confidence            7767665553

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.79  E-value=4.9e-09  Score=100.89  Aligned_cols=145  Identities=17%  Similarity=0.184  Sum_probs=90.5

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCC---
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTP---  220 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~---  220 (333)
                      ++....++.+...+..++  +++|+|+||+|||||++.+.+...+...   ++.             ....++++.+   
T Consensus        21 ~~~~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~   98 (510)
T PRK15439         21 YSGVEVLKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLF   98 (510)
T ss_pred             eCCceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccC
Confidence            344445666776677777  9999999999999999999977543210   110             0112233322   


Q ss_pred             ---CH--------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh-----
Q 046889          221 ---SI--------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-----  272 (333)
Q Consensus       221 ---~~--------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-----  272 (333)
                         +.              ......++..+++......     + .+.....|...|..++-+++||++.+..|.     
T Consensus        99 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~  178 (510)
T PRK15439         99 PNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETER  178 (510)
T ss_pred             CCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence               11              1223455666776432222     2 244566788888899999999999877542     


Q ss_pred             -hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 -DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 -~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                       ..+.......|..||++||+.+.+..++++.+.+
T Consensus       179 l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l  213 (510)
T PRK15439        179 LFSRIRELLAQGVGIVFISHKLPEIRQLADRISVM  213 (510)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence             2222222334778999999998877766665333

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.79  E-value=1.2e-08  Score=87.38  Aligned_cols=140  Identities=16%  Similarity=0.231  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT  223 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~  223 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.           .....+.+.+      +..
T Consensus        16 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   93 (220)
T cd03263          16 PAVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR   93 (220)
T ss_pred             eeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence            35566666666777  9999999999999999999976543211   000           0011222221      111


Q ss_pred             ------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------
Q 046889          224 ------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------  273 (333)
Q Consensus       224 ------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------  273 (333)
                                        ....++++.+++....     ..+ .+.....+...+..++-+++||++.+..|..      
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~  173 (220)
T cd03263          94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW  173 (220)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH
Confidence                              1123345555553211     112 2334556788888899999999998764422      


Q ss_pred             hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+...... +..||++||+.+.+..+++..+.+
T Consensus       174 ~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l  205 (220)
T cd03263         174 DLILEVRK-GRSIILTTHSMDEAEALCDRIAIM  205 (220)
T ss_pred             HHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEE
Confidence            22222222 467999999999887776766444

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.79  E-value=9.3e-09  Score=88.97  Aligned_cols=140  Identities=19%  Similarity=0.314  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCC------CH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTP------SI  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~------~~  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++             .....++++.+      ++
T Consensus        15 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv   92 (236)
T cd03219          15 ALDDVSFSVRPGE--IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV   92 (236)
T ss_pred             EecCceEEecCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence            4555555566777  9999999999999999999876532210   00             00011222321      11


Q ss_pred             H----------------------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          223 T----------------------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       223 ~----------------------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                      .                            ....++++.+++......     + .+.....+.+.+..++-+++||++.+
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~  172 (236)
T cd03219          93 LENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAA  172 (236)
T ss_pred             HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            1                            112334455555321111     1 23345567788888999999999987


Q ss_pred             chhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          269 QIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       269 ~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|..      .+.......|..||++||+.+.+..++++.+.+
T Consensus       173 ~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l  216 (236)
T cd03219         173 GLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVL  216 (236)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            75422      222222224778999999999887777776544

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.79  E-value=2.3e-08  Score=79.57  Aligned_cols=119  Identities=21%  Similarity=0.258  Sum_probs=72.4

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHH
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRAS  248 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  248 (333)
                      +...+.+++  +++|+|++|+|||||++.+.+...+.   ...+++.-.             ..++.-. .-...+....
T Consensus        19 ~~~~~~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~-------------~~i~~~~-~lS~G~~~rv   79 (144)
T cd03221          19 ISLTINPGD--RIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST-------------VKIGYFE-QLSGGEKMRL   79 (144)
T ss_pred             eEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe-------------EEEEEEc-cCCHHHHHHH
Confidence            333344566  99999999999999999998876432   223332100             0000000 0112334455


Q ss_pred             HHHHHHccCceEEEEeCCCCchhhhh---ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          249 LLCKRIEKQRVLVILDDLWVQIELDR---VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       249 ~l~~~l~~k~~LlVlDdv~~~~~~~~---l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+.+.+..++-++++|++.+..|...   +...+...+..||++||+.+.+..++++.+.+
T Consensus        80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l  140 (144)
T cd03221          80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIEL  140 (144)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            67888888999999999986644211   10001111457999999999887776666554

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.78  E-value=7.2e-09  Score=85.95  Aligned_cols=136  Identities=18%  Similarity=0.219  Sum_probs=79.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCCC---H---
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTPS---I---  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~~---~---  222 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++.             ....++++.+.   .   
T Consensus        15 ~l~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~   92 (182)
T cd03215          15 AVRDVSFEVRAGE--IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD   92 (182)
T ss_pred             eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence            3444444455666  8999999999999999999977543221   000             01122222210   0   


Q ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHH
Q 046889          223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAAC  296 (333)
Q Consensus       223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~  296 (333)
                      ..+.+.+.-...     -...+...-.+...+..++-+++||++.+..|..      .+.......|..||++||+....
T Consensus        93 ~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~  167 (182)
T cd03215          93 LSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL  167 (182)
T ss_pred             CcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            112222211000     1122334556888888899999999998764422      22222223477899999999887


Q ss_pred             hhcccceEecC
Q 046889          297 NQMQAHIVDVR  307 (333)
Q Consensus       297 ~~~~~~~~~l~  307 (333)
                      ..++++.+.++
T Consensus       168 ~~~~d~v~~l~  178 (182)
T cd03215         168 LGLCDRILVMY  178 (182)
T ss_pred             HHhCCEEEEec
Confidence            77777665543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.78  E-value=1.3e-08  Score=83.57  Aligned_cols=127  Identities=16%  Similarity=0.232  Sum_probs=76.2

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE------------------eCCCCCHHHHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV------------------VSQTPSITKIQ  226 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~------------------v~~~~~~~~~~  226 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+.   ...+++.                  +.+.+....  
T Consensus        17 ~l~~i~~~i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~--   89 (171)
T cd03228          17 VLKDVSLTIKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS--   89 (171)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc--
Confidence            4555555556677  99999999999999999999876532   1222211                  111111000  


Q ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcc
Q 046889          227 DEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQ  300 (333)
Q Consensus       227 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~  300 (333)
                      ..+.+.+      -...+...-.+.+.+..++-+++||++.+..|      +..+...... +..||++||+.+.... +
T Consensus        90 ~t~~e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~  161 (171)
T cd03228          90 GTIRENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRD-A  161 (171)
T ss_pred             chHHHHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHh-C
Confidence            0000000      11123345568888888999999999987644      2222222222 5789999999998766 5


Q ss_pred             cceEec
Q 046889          301 AHIVDV  306 (333)
Q Consensus       301 ~~~~~l  306 (333)
                      ++.+.+
T Consensus       162 d~~~~l  167 (171)
T cd03228         162 DRIIVL  167 (171)
T ss_pred             CEEEEE
Confidence            555544

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.78  E-value=1.7e-08  Score=96.78  Aligned_cols=144  Identities=15%  Similarity=0.159  Sum_probs=88.4

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-----
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-----  220 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-----  220 (333)
                      +....++.+...+..|+  +++|+|+||+|||||++.+.+...+...   +..            .....+.+.+     
T Consensus        14 ~~~~il~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   91 (490)
T PRK10938         14 SDTKTLQLPSLTLNAGD--SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDML   91 (490)
T ss_pred             CCeeecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhc
Confidence            33346677777777788  9999999999999999999976543210   000            0000111110     


Q ss_pred             ---------CH----------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889          221 ---------SI----------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---  272 (333)
Q Consensus       221 ---------~~----------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---  272 (333)
                               ..          ..-...+++.+++...     ...+ .+.....+...|..++-+++||++.+..|.   
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~  171 (490)
T PRK10938         92 SPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR  171 (490)
T ss_pred             ccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence                     11          1123455666666421     1222 344566788888889999999999877542   


Q ss_pred             ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         ..+.......|..||++||+...+..++++.+.|
T Consensus       172 ~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l  208 (490)
T PRK10938        172 QQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVL  208 (490)
T ss_pred             HHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence               2222222334778999999998877777666433

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.78  E-value=2.8e-08  Score=87.08  Aligned_cols=140  Identities=14%  Similarity=0.241  Sum_probs=85.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------------------eEEEEEe
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------------------EVAMAVV  216 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------------------~~~wv~v  216 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |+                         ...+.++
T Consensus        20 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v   97 (257)
T PRK10619         20 VLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV   97 (257)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence            4455555566677  9999999999999999999977543211   00                         0112333


Q ss_pred             CCCC------CHH-H------------------HHHHHHHHhCCCCCC------CCC-HHHHHHHHHHHHccCceEEEEe
Q 046889          217 SQTP------SIT-K------------------IQDEIAGWLGIKELP------DND-ELVRASLLCKRIEKQRVLVILD  264 (333)
Q Consensus       217 ~~~~------~~~-~------------------~~~~i~~~l~~~~~~------~~~-~~~~~~~l~~~l~~k~~LlVlD  264 (333)
                      ++.+      +.. .                  ...++++.+++....      ..+ .+.....+.+.|..++-+++||
T Consensus        98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  177 (257)
T PRK10619         98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD  177 (257)
T ss_pred             ecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            3332      111 1                  123445555553211      112 2345567888888899999999


Q ss_pred             CCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          265 DLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       265 dv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ++.+..|..      .+.......|..||++||+...+..++++.+.+
T Consensus       178 EPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l  225 (257)
T PRK10619        178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL  225 (257)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            998775422      222222334788999999999888777766444

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.78  E-value=4.4e-09  Score=96.21  Aligned_cols=140  Identities=12%  Similarity=0.217  Sum_probs=86.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc--C---CCe----------EEEEEeCCCCC------H-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK--M---FDE----------VAMAVVSQTPS------I-  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--~---f~~----------~~wv~v~~~~~------~-  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+..  .   |+.          +....+.+.+.      + 
T Consensus        20 ~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~   97 (362)
T TIGR03258        20 VLDDLSLEIEAGE--LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVE   97 (362)
T ss_pred             EEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHH
Confidence            4555555556677  999999999999999999998765433  1   110          01122223221      1 


Q ss_pred             -----------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889          223 -----------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD  273 (333)
Q Consensus       223 -----------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~  273 (333)
                                       ......+++.+++......     + -+..+-.|.+.|..++-+++||++.+..|      +.
T Consensus        98 enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~  177 (362)
T TIGR03258        98 DNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMR  177 (362)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence                             1123445666666432221     2 34456678899999999999999987644      22


Q ss_pred             hccCCCC-CC-CcEEEEeeCChHHHhhcccceEec
Q 046889          274 RVGIPYG-ND-GCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ~l~~~~~-~~-g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ....... .. |..+|++||+...+..++++.+.|
T Consensus       178 ~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl  212 (362)
T TIGR03258       178 EEIAALHEELPELTILCVTHDQDDALTLADKAGIM  212 (362)
T ss_pred             HHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            2212222 22 678999999999888777776433

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.78  E-value=9.9e-09  Score=93.16  Aligned_cols=140  Identities=11%  Similarity=0.225  Sum_probs=86.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC-------eEEEEEeCCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD-------EVAMAVVSQTPS-----  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~-------~~~wv~v~~~~~-----  221 (333)
                      .++++...+..++  +++|+|++|+|||||++.+.+..++...           +.       ......+.+.+.     
T Consensus        20 ~L~~vsl~i~~Ge--i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~   97 (343)
T TIGR02314        20 ALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR   97 (343)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence            4556666666777  9999999999999999999977553210           00       001122223221     


Q ss_pred             -H------------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889          222 -I------------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL----  272 (333)
Q Consensus       222 -~------------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----  272 (333)
                       .                  .....++++.+++.+....     + -+..+..|.+.|..++-+|++|++.+..|.    
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~  177 (343)
T TIGR02314        98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ  177 (343)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence             1                  1112345566666432221     1 234566788999999999999999877542    


Q ss_pred             --hhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 --DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 --~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                        ..+..... ..|..||++||+.+++..++++.+.|
T Consensus       178 ~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl  214 (343)
T TIGR02314       178 SILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI  214 (343)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              22222222 23788999999999988777766433

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=3.9e-09  Score=84.92  Aligned_cols=129  Identities=21%  Similarity=0.250  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE----------------EeCCCCC------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA----------------VVSQTPS------  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv----------------~v~~~~~------  221 (333)
                      ..+..|...+.+++  .+-|.|+||+|||||.|.+.+-.++..  ..+.|-                ++++.+.      
T Consensus        16 ~lf~~L~f~l~~Ge--~~~i~G~NG~GKTtLLRilaGLl~p~~--G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLT   91 (209)
T COG4133          16 TLFSDLSFTLNAGE--ALQITGPNGAGKTTLLRILAGLLRPDA--GEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELT   91 (209)
T ss_pred             eeecceeEEEcCCC--EEEEECCCCCcHHHHHHHHHcccCCCC--CeEEecCCCCccchhhHHHHHHHhhccccccchhh
Confidence            34556666677788  899999999999999999998765432  112221                0111110      


Q ss_pred             ---------------HHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchh------hhh
Q 046889          222 ---------------ITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDR  274 (333)
Q Consensus       222 ---------------~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~  274 (333)
                                     ...-+.+.+..+++.+..+.+      -++.+..+.+.+-.++-|-+||++....|      +..
T Consensus        92 a~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~  171 (209)
T COG4133          92 ALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTA  171 (209)
T ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHH
Confidence                           012233445556655443333      34456678888899999999999987644      444


Q ss_pred             ccCCCCCCCcEEEEeeCChHHH
Q 046889          275 VGIPYGNDGCKFLLTSRSRAAC  296 (333)
Q Consensus       275 l~~~~~~~g~~vivTTr~~~v~  296 (333)
                      +.......|..||.|||.+-..
T Consensus       172 l~~~H~~~GGiVllttHq~l~~  193 (209)
T COG4133         172 LMAAHAAQGGIVLLTTHQPLPI  193 (209)
T ss_pred             HHHHHhcCCCEEEEecCCccCC
Confidence            4445566688899999987653

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.78  E-value=9.5e-09  Score=99.44  Aligned_cols=140  Identities=16%  Similarity=0.249  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCC------CH-----------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTP------SI-----------  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~------~~-----------  222 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+.+...+...   |+. ....++++.+      +.           
T Consensus        15 ~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~   92 (530)
T PRK15064         15 PLFENISVKFGGGN--RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTEL   92 (530)
T ss_pred             EeEeCCEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHH
Confidence            35566666666777  9999999999999999999987543211   111 1111223321      10           


Q ss_pred             ---------------------------------------HHHHHHHHHHhCCCCC------CCCC-HHHHHHHHHHHHcc
Q 046889          223 ---------------------------------------TKIQDEIAGWLGIKEL------PDND-ELVRASLLCKRIEK  256 (333)
Q Consensus       223 ---------------------------------------~~~~~~i~~~l~~~~~------~~~~-~~~~~~~l~~~l~~  256 (333)
                                                             ......+++.+++...      ...+ .+.....+...|..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~  172 (530)
T PRK15064         93 WEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS  172 (530)
T ss_pred             HHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhc
Confidence                                                   0112344555555321      1112 34456678888888


Q ss_pred             CceEEEEeCCCCchhhhhc---cCCCCCCCcEEEEeeCChHHHhhcccceEe
Q 046889          257 QRVLVILDDLWVQIELDRV---GIPYGNDGCKFLLTSRSRAACNQMQAHIVD  305 (333)
Q Consensus       257 k~~LlVlDdv~~~~~~~~l---~~~~~~~g~~vivTTr~~~v~~~~~~~~~~  305 (333)
                      ++-+++||++.+..|....   .-.+...|..||++||+...+..++++.+.
T Consensus       173 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~  224 (530)
T PRK15064        173 NPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMAD  224 (530)
T ss_pred             CCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEE
Confidence            9999999999877542221   000123467899999999988777766633

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.78  E-value=9.5e-09  Score=89.14  Aligned_cols=140  Identities=15%  Similarity=0.253  Sum_probs=83.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCC------C
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTP------S  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~------~  221 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++.              ....++++.+      +
T Consensus        16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   93 (240)
T PRK09493         16 VLHNIDLNIDQGE--VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT   93 (240)
T ss_pred             EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence            4555555566777  9999999999999999999976543210   000              0011222221      1


Q ss_pred             HH-------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889          222 IT-------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD---  273 (333)
Q Consensus       222 ~~-------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---  273 (333)
                      ..                   ....++++.+++...     ...+ .+.....+.+.+..++-+++||++.+..|..   
T Consensus        94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~  173 (240)
T PRK09493         94 ALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH  173 (240)
T ss_pred             HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence            10                   112234455554311     1112 2334556778888889999999998764422   


Q ss_pred             ---hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ---RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ---~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         .+.......|..||++||+.+.+..++++.+.+
T Consensus       174 ~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  209 (240)
T PRK09493        174 EVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI  209 (240)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence               222222334778999999999887777766444

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=1e-08  Score=89.01  Aligned_cols=141  Identities=11%  Similarity=0.193  Sum_probs=83.3

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------------EEEEEeCCCC--
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------------VAMAVVSQTP--  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------------~~wv~v~~~~--  220 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++.                  ....++++.+  
T Consensus        16 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~   93 (242)
T PRK11124         16 QALFDITLDCPQGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL   93 (242)
T ss_pred             eeEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence            34555555666777  9999999999999999999977543211   000                  0012233322  


Q ss_pred             ----CHHH-------------------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889          221 ----SITK-------------------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE  271 (333)
Q Consensus       221 ----~~~~-------------------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~  271 (333)
                          +..+                   ....+++.+++.....     .+ .+.....+.+.+..++-+++||++.+..|
T Consensus        94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD  173 (242)
T PRK11124         94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD  173 (242)
T ss_pred             cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence                1111                   1223344455432111     12 23445567888888899999999987754


Q ss_pred             hh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 LD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..      .+.......|..||++||+......++++.+.+
T Consensus       174 ~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l  214 (242)
T PRK11124        174 PEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYM  214 (242)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            22      221222334778999999999877666655444

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.77  E-value=7.4e-09  Score=89.87  Aligned_cols=139  Identities=16%  Similarity=0.208  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------------CCeEEEEEeCCCC------C
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------------FDEVAMAVVSQTP------S  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------------f~~~~wv~v~~~~------~  221 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...                 +...+ ..+++.+      +
T Consensus        18 ~l~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~t   94 (241)
T PRK10895         18 VVEDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI-GYLPQEASIFRRLS   94 (241)
T ss_pred             EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe-EEeccCCcccccCc
Confidence            4555565566777  9999999999999999999976543210                 00011 1222221      1


Q ss_pred             H-------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889          222 I-------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL----  272 (333)
Q Consensus       222 ~-------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----  272 (333)
                      .                   .....++++.+++...     ...+ .+.....+...+..++-+++||++.+..|.    
T Consensus        95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  174 (241)
T PRK10895         95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI  174 (241)
T ss_pred             HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence            1                   1122334444444311     1112 233455678888889999999999876442    


Q ss_pred             --hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 --DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 --~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                        ..+.......|..||++||+.+....++++.+.+
T Consensus       175 ~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l  210 (241)
T PRK10895        175 DIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIV  210 (241)
T ss_pred             HHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence              2221222334778999999998766666665433

>PF13173 AAA_14: AAA domain

Probab=98.77  E-value=3e-08  Score=77.28  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR  258 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~  258 (333)
                      +++.|.|+-|+|||||++.++....   .....+++............                .+ ....+.+....+.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~   62 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK   62 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence            4899999999999999999987764   22334455433321110000                00 1222333344478


Q ss_pred             eEEEEeCCCCchhhhhccCCCCC--CCcEEEEeeCChHHHhh-----cccce--EecCCCCHHHH
Q 046889          259 VLVILDDLWVQIELDRVGIPYGN--DGCKFLLTSRSRAACNQ-----MQAHI--VDVRTLTEEES  314 (333)
Q Consensus       259 ~LlVlDdv~~~~~~~~l~~~~~~--~g~~vivTTr~~~v~~~-----~~~~~--~~l~~L~~~e~  314 (333)
                      .+++||++....+|....-.+.+  ...+|++|+.+......     +..+.  ++|.||+-.|.
T Consensus        63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~  127 (128)
T PF13173_consen   63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF  127 (128)
T ss_pred             cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence            89999999888776665332222  35789999998776422     22222  89999998764

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.77  E-value=1.3e-08  Score=88.06  Aligned_cols=91  Identities=18%  Similarity=0.171  Sum_probs=61.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCHHH-----HH
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT--PSITKIQDEIAGWLGIKELPDNDELV-----RA  247 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~-----~~  247 (333)
                      .++  .++|+|++|+|||||++.+++..... +|+..+|+++.+.  .++.++++.+...+-...........     ..
T Consensus        15 ~Gq--r~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~   91 (249)
T cd01128          15 KGQ--RGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV   91 (249)
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence            355  89999999999999999999988754 8999999997766  67888888873222211111111111     11


Q ss_pred             HHHHHH--HccCceEEEEeCCCC
Q 046889          248 SLLCKR--IEKQRVLVILDDLWV  268 (333)
Q Consensus       248 ~~l~~~--l~~k~~LlVlDdv~~  268 (333)
                      ....+.  -.+++.++++|++..
T Consensus        92 ~~~a~~~~~~G~~vll~iDei~r  114 (249)
T cd01128          92 LEKAKRLVEHGKDVVILLDSITR  114 (249)
T ss_pred             HHHHHHHHHCCCCEEEEEECHHH
Confidence            122222  236899999999863

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.77  E-value=5.2e-08  Score=86.11  Aligned_cols=137  Identities=15%  Similarity=0.230  Sum_probs=81.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------eEEEEEeCCCCC-----------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------EVAMAVVSQTPS-----------  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------~~~wv~v~~~~~-----------  221 (333)
                      .++.+...+.+++  +++|+|+||+|||||++.+.+...+...   ++         .....++++.+.           
T Consensus        22 il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~   99 (272)
T PRK15056         22 ALRDASFTVPGGS--IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED   99 (272)
T ss_pred             EEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence            3445555555677  9999999999999999999876533110   00         001222222210           


Q ss_pred             -------------------HHHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889          222 -------------------ITKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-----  271 (333)
Q Consensus       222 -------------------~~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----  271 (333)
                                         .......+++.+++...     ...+ .+.....+.+.|..++-+++||++.+..|     
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~  179 (272)
T PRK15056        100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA  179 (272)
T ss_pred             heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence                               01123345555655311     1122 34445668888888999999999987744     


Q ss_pred             -hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          272 -LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       272 -~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                       +..+.......|..||++||+.+.+..+++..
T Consensus       180 ~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v  212 (272)
T PRK15056        180 RIISLLRELRDEGKTMLVSTHNLGSVTEFCDYT  212 (272)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence             22222222334778999999998776666655

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.77  E-value=9.2e-09  Score=86.65  Aligned_cols=137  Identities=15%  Similarity=0.177  Sum_probs=81.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--HhhcC---CC-------------eEEEEEeCCCCCH--HH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KEKKM---FD-------------EVAMAVVSQTPSI--TK  224 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~~~---f~-------------~~~wv~v~~~~~~--~~  224 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+..  .+...   |+             .....++++.+..  ..
T Consensus        15 ~l~~is~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (200)
T cd03217          15 ILKGVNLTIKKGE--VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV   92 (200)
T ss_pred             eeeccceEECCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCc
Confidence            5566666666777  99999999999999999998863  21110   00             0001123333211  01


Q ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhh
Q 046889          225 IQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQ  298 (333)
Q Consensus       225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~  298 (333)
                      ...+++....   ..-...+.....+.+.+..++-+++||++.+..|      +..+.......|..||++||+......
T Consensus        93 ~~~~~l~~~~---~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~  169 (200)
T cd03217          93 KNADFLRYVN---EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY  169 (200)
T ss_pred             cHHHHHhhcc---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence            1222222111   1122234456678888889999999999987644      222222222347789999999998776


Q ss_pred             -cccceEec
Q 046889          299 -MQAHIVDV  306 (333)
Q Consensus       299 -~~~~~~~l  306 (333)
                       ++++.+.+
T Consensus       170 ~~~d~i~~l  178 (200)
T cd03217         170 IKPDRVHVL  178 (200)
T ss_pred             hhCCEEEEE
Confidence             56665433

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.77  E-value=1.1e-08  Score=94.00  Aligned_cols=140  Identities=16%  Similarity=0.208  Sum_probs=85.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH---
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI---  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~---  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+..++...   |+.          ....++.+.+      +.   
T Consensus        18 vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~en   95 (369)
T PRK11000         18 ISKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAEN   95 (369)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHH
Confidence            4455555556677  9999999999999999999977543211   100          0012233322      11   


Q ss_pred             ---------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hc
Q 046889          223 ---------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RV  275 (333)
Q Consensus       223 ---------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l  275 (333)
                                     ......+++.+++.....     .+ -+...-.|.+.|..++-+|+||++.+..|..      .+
T Consensus        96 i~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~  175 (369)
T PRK11000         96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE  175 (369)
T ss_pred             HHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence                           112334556666642211     22 3445667888999999999999998775422      12


Q ss_pred             cCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          276 GIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       276 ~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..... ..|..||++||+.+.+..++++.+.|
T Consensus       176 L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl  207 (369)
T PRK11000        176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL  207 (369)
T ss_pred             HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            12222 23778999999999887777766443

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.77  E-value=7.5e-09  Score=87.67  Aligned_cols=141  Identities=15%  Similarity=0.143  Sum_probs=82.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE---------EEEEeCCCC------CHH---
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV---------AMAVVSQTP------SIT---  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~---------~wv~v~~~~------~~~---  223 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++..         ...++++..      +..   
T Consensus        17 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l   94 (207)
T PRK13539         17 LFSGLSFTLAAGE--ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENL   94 (207)
T ss_pred             EEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHH
Confidence            3455555555677  9999999999999999999977543211   1000         001122111      111   


Q ss_pred             -----------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCC
Q 046889          224 -----------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYG  280 (333)
Q Consensus       224 -----------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~  280 (333)
                                 .-...+++.+++.....     .+ .+...-.+...+..++-+++||++.+..|      +..+.....
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  174 (207)
T PRK13539         95 EFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL  174 (207)
T ss_pred             HHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                       11234455555532111     11 23445567888888999999999987644      222222223


Q ss_pred             CCCcEEEEeeCChHHHhhcccceEecCCC
Q 046889          281 NDGCKFLLTSRSRAACNQMQAHIVDVRTL  309 (333)
Q Consensus       281 ~~g~~vivTTr~~~v~~~~~~~~~~l~~L  309 (333)
                      ..|..||++||+......  +..+.++..
T Consensus       175 ~~~~tiii~sH~~~~~~~--~~~~~~~~~  201 (207)
T PRK13539        175 AQGGIVIAATHIPLGLPG--ARELDLGPF  201 (207)
T ss_pred             HCCCEEEEEeCCchhhcc--CcEEeecCc
Confidence            347789999999987665  555666653

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.76  E-value=2.3e-08  Score=86.15  Aligned_cols=132  Identities=17%  Similarity=0.279  Sum_probs=78.0

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-E------EEEEeCCCC------CHHH------------
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-V------AMAVVSQTP------SITK------------  224 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~------~wv~v~~~~------~~~~------------  224 (333)
                      +..++  +++|+|++|+|||||++.+.+...+...   ++. .      ....+++.+      +..+            
T Consensus         8 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~   85 (230)
T TIGR01184         8 IQQGE--FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPD   85 (230)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccC
Confidence            34566  9999999999999999999977543211   000 0      001222221      1111            


Q ss_pred             --------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCC-CCC
Q 046889          225 --------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYG-NDG  283 (333)
Q Consensus       225 --------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~-~~g  283 (333)
                              ....+++.+++.....     .+ .+.....+.+.+..++-+++||++.+..|      +..+..... ..|
T Consensus        86 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~  165 (230)
T TIGR01184        86 LSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR  165 (230)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC
Confidence                    1233455555432111     12 23445668888888999999999987654      222222222 237


Q ss_pred             cEEEEeeCChHHHhhcccceEec
Q 046889          284 CKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       284 ~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..||++||+...+..++++.+.+
T Consensus       166 ~tii~~sH~~~~~~~~~d~v~~l  188 (230)
T TIGR01184       166 VTVLMVTHDVDEALLLSDRVVML  188 (230)
T ss_pred             CEEEEEeCCHHHHHHhcCEEEEE
Confidence            78999999999877766666444

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.76  E-value=5.9e-09  Score=93.46  Aligned_cols=136  Identities=13%  Similarity=0.218  Sum_probs=82.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT-  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~-  223 (333)
                      .++.+...+.+|+  +++|+|+||+|||||++.+.+...+...   ++.           ....++++.+      +.. 
T Consensus        17 ~l~~is~~i~~Ge--i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e   94 (301)
T TIGR03522        17 ALDEVSFEAQKGR--IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVRE   94 (301)
T ss_pred             EEEEeEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHH
Confidence            3444444455667  9999999999999999999977543221   000           0112233322      111 


Q ss_pred             -----------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhh
Q 046889          224 -----------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDR  274 (333)
Q Consensus       224 -----------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~  274 (333)
                                       .....+++.+++......     + .+...-.+...+..++-+++||++.+..|      +..
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~  174 (301)
T TIGR03522        95 YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN  174 (301)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                             123344555555422111     1 23445568888889999999999987644      222


Q ss_pred             ccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          275 VGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      +...... +..||+|||+.+.+..++++.
T Consensus       175 ~l~~~~~-~~tiii~sH~l~~~~~~~d~i  202 (301)
T TIGR03522       175 VIKNIGK-DKTIILSTHIMQEVEAICDRV  202 (301)
T ss_pred             HHHHhcC-CCEEEEEcCCHHHHHHhCCEE
Confidence            2222333 578999999999877776666

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.76  E-value=1e-08  Score=94.91  Aligned_cols=139  Identities=16%  Similarity=0.236  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---------C--C----eEEEEEeCCCCC-------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---------F--D----EVAMAVVSQTPS-------  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---------f--~----~~~wv~v~~~~~-------  221 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+.+..++...         .  .    ......+++...       
T Consensus        17 ~vL~~vs~~i~~Ge--iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv   94 (402)
T PRK09536         17 TVLDGVDLSVREGS--LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDV   94 (402)
T ss_pred             EEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCH
Confidence            34555555566677  9999999999999999999976543210         0  0    000112222210       


Q ss_pred             ---------------------HHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh--
Q 046889          222 ---------------------ITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--  272 (333)
Q Consensus       222 ---------------------~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--  272 (333)
                                           .......+++.+++.....     .+ -+.++..|.+.|..++-+|+||++.+..|.  
T Consensus        95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~  174 (402)
T PRK09536         95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH  174 (402)
T ss_pred             HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence                                 0123345566666642222     22 344566788899999999999999877542  


Q ss_pred             ----hhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          273 ----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       273 ----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                          ..+.......|..||++||+.+.+..++++.+
T Consensus       175 ~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii  210 (402)
T PRK09536        175 QVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELV  210 (402)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence                22222223347789999999999887777663

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=1.7e-08  Score=90.56  Aligned_cols=140  Identities=14%  Similarity=0.209  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C---C-----------------------------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F---D-----------------------------  209 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f---~-----------------------------  209 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+..++...   +   +                             
T Consensus        22 ~l~~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (305)
T PRK13651         22 ALDNVSVEINQGE--FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK   99 (305)
T ss_pred             ceeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccch
Confidence            4555666666777  9999999999999999999976532110   0   0                             


Q ss_pred             ----eEEEEEeCCCC-------CH------------------HHHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHH
Q 046889          210 ----EVAMAVVSQTP-------SI------------------TKIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKR  253 (333)
Q Consensus       210 ----~~~wv~v~~~~-------~~------------------~~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~  253 (333)
                          .....++++.+       ++                  ......+++.+++. ....     .+ .+.....+...
T Consensus       100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a  179 (305)
T PRK13651        100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI  179 (305)
T ss_pred             HHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence                00011233321       00                  11133445556653 1111     12 23445678888


Q ss_pred             HccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          254 IEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       254 l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      |..++-+|+||++.+..|..      .+.......|..||++||+.+.+..++++.+.|
T Consensus       180 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl  238 (305)
T PRK13651        180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF  238 (305)
T ss_pred             HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence            99999999999998764422      221222234788999999998776666666433

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.76  E-value=9e-09  Score=89.39  Aligned_cols=140  Identities=14%  Similarity=0.211  Sum_probs=83.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCC------CH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTP------SI-  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~------~~-  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   |+            .....++++.+      ++ 
T Consensus        16 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (242)
T cd03295          16 AVNNLNLEIAKGE--FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE   93 (242)
T ss_pred             EeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence            3444555556677  8999999999999999999976543211   00            01122333322      11 


Q ss_pred             -----------------HHHHHHHHHHhCCCC--CCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhhh----
Q 046889          223 -----------------TKIQDEIAGWLGIKE--LPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIELD----  273 (333)
Q Consensus       223 -----------------~~~~~~i~~~l~~~~--~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----  273 (333)
                                       .....++++.+++..  ....     + .+...-.+.+.+..++-+++||++.+..|..    
T Consensus        94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  173 (242)
T cd03295          94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ  173 (242)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence                             011234555566532  1111     1 2334556788888899999999998764422    


Q ss_pred             --hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          274 --RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 --~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                        .+...... .|..||++||+...+..++++.+.+
T Consensus       174 l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l  209 (242)
T cd03295         174 LQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIM  209 (242)
T ss_pred             HHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence              22222222 3778999999999877766666444

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.76  E-value=1.4e-08  Score=88.04  Aligned_cols=140  Identities=16%  Similarity=0.229  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI-------  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~-------  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   |+.            ....++++.+..       
T Consensus        18 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e   95 (241)
T PRK14250         18 ILKDISVKFEGGA--IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKD   95 (241)
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHH
Confidence            4555665566777  9999999999999999999976542211   000            011223333210       


Q ss_pred             ------------HHHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccC
Q 046889          223 ------------TKIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGI  277 (333)
Q Consensus       223 ------------~~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~  277 (333)
                                  ..-...+++.+++. ..     ...+ .+.....+...+..++-+++||++.+..|..      .+..
T Consensus        96 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  175 (241)
T PRK14250         96 NIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV  175 (241)
T ss_pred             HHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence                        11223455566653 11     1122 3444566888888899999999998775422      2212


Q ss_pred             CCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          278 PYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       278 ~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .... .|..||++||+.+....++++.+.+
T Consensus       176 ~~~~~~g~tii~~sH~~~~~~~~~d~i~~l  205 (241)
T PRK14250        176 KLKNKMNLTVIWITHNMEQAKRIGDYTAFL  205 (241)
T ss_pred             HHHHhCCCEEEEEeccHHHHHHhCCEEEEE
Confidence            2222 3778999999999877766666433

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.76  E-value=1.6e-08  Score=88.16  Aligned_cols=138  Identities=14%  Similarity=0.174  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--HhhcC---CC------------e-EEEEEeCCCCCH----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KEKKM---FD------------E-VAMAVVSQTPSI----  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~~~---f~------------~-~~wv~v~~~~~~----  222 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+..  .+...   |+            . .....+++.+..    
T Consensus        16 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   93 (248)
T PRK09580         16 ILRGLNLEVRPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV   93 (248)
T ss_pred             eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence            4555555566777  99999999999999999999873  22110   00            0 001122222110    


Q ss_pred             ---------------------------HHHHHHHHHHhCCCC------C-CCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          223 ---------------------------TKIQDEIAGWLGIKE------L-PDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       223 ---------------------------~~~~~~i~~~l~~~~------~-~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                                                 ......+++.++++.      . ...+ .+.....+.+.+..++-+++||++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt  173 (248)
T PRK09580         94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD  173 (248)
T ss_pred             hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence                                       111223333334421      0 1122 3445567888888999999999998


Q ss_pred             Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhc-ccceE
Q 046889          268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQM-QAHIV  304 (333)
Q Consensus       268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~-~~~~~  304 (333)
                      +..|..      .+.......|..||++||+......+ ++..+
T Consensus       174 ~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~  217 (248)
T PRK09580        174 SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH  217 (248)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEE
Confidence            775422      22122233477899999999887765 45443

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=7.3e-09  Score=94.71  Aligned_cols=138  Identities=17%  Similarity=0.197  Sum_probs=85.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH---
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI---  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~---  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+..++...   |+.          ....++.|.+      ++   
T Consensus        19 ~l~~vsl~i~~Ge--~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eN   96 (356)
T PRK11650         19 VIKGIDLDVADGE--FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVREN   96 (356)
T ss_pred             EEeeeeEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHH
Confidence            4455555566677  8999999999999999999987543221   110          0111222322      11   


Q ss_pred             ---------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhc
Q 046889          223 ---------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRV  275 (333)
Q Consensus       223 ---------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l  275 (333)
                                     ......+++.+++.....     .+ -+.++-.|.+.|..++-+++||++.+..|      +...
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~  176 (356)
T PRK11650         97 MAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLE  176 (356)
T ss_pred             HHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence                           112345566666642211     22 34456678899999999999999987644      2222


Q ss_pred             cCCC-CCCCcEEEEeeCChHHHhhcccceE
Q 046889          276 GIPY-GNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       276 ~~~~-~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      .... ...|..+|++||+...+..++++.+
T Consensus       177 l~~l~~~~g~tii~vTHd~~ea~~l~D~i~  206 (356)
T PRK11650        177 IQRLHRRLKTTSLYVTHDQVEAMTLADRVV  206 (356)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            1112 2337889999999998877777663

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=7.4e-09  Score=94.42  Aligned_cols=140  Identities=11%  Similarity=0.190  Sum_probs=86.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCCC------H---
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTPS------I---  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~~------~---  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.          +....+.|.+.      .   
T Consensus        21 ~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eN   98 (351)
T PRK11432         21 VIDNLNLTIKQGT--MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGEN   98 (351)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHH
Confidence            4555655566677  9999999999999999999977654321   110          01112233221      1   


Q ss_pred             ---------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhc
Q 046889          223 ---------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRV  275 (333)
Q Consensus       223 ---------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l  275 (333)
                                     ......+++.+++.....     .+ -+..+-.|.+.|..++-+++||++.+..|      +...
T Consensus        99 i~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~  178 (351)
T PRK11432         99 VGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK  178 (351)
T ss_pred             HHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence                           112234555556542221     12 34456678899999999999999987644      2222


Q ss_pred             cCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          276 GIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       276 ~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .... ...|..+|++||+...+..++++.+.|
T Consensus       179 l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm  210 (351)
T PRK11432        179 IRELQQQFNITSLYVTHDQSEAFAVSDTVIVM  210 (351)
T ss_pred             HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            1222 233788999999999888777776433

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.75  E-value=3.8e-08  Score=90.50  Aligned_cols=135  Identities=18%  Similarity=0.191  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C---CeEEE---------EEeCCCC------
Q 046889          162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F---DEVAM---------AVVSQTP------  220 (333)
Q Consensus       162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f---~~~~w---------v~v~~~~------  220 (333)
                      ....++.+...+..++  .++|+||+|+|||||++.+.+-..+...   +   +..-|         -+.+|+-      
T Consensus       348 ~~pil~~isF~l~~G~--~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT  425 (580)
T COG4618         348 KKPILKGISFALQAGE--ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT  425 (580)
T ss_pred             CCcceecceeEecCCc--eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc
Confidence            3467888899898898  9999999999999999999977654220   0   01112         2233322      


Q ss_pred             ------------CHHHHHH--------HHHHHhCCC--------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-
Q 046889          221 ------------SITKIQD--------EIAGWLGIK--------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-  271 (333)
Q Consensus       221 ------------~~~~~~~--------~i~~~l~~~--------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-  271 (333)
                                  +.+++++        +++-.+...        ...-..-+.+...+.+.+-+.++|+|||++-+..| 
T Consensus       426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~  505 (580)
T COG4618         426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS  505 (580)
T ss_pred             HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence                        2222222        111111110        11112235567789999999999999999976533 


Q ss_pred             -----hhhccCCCCCCCcEEEEeeCChHHHhh
Q 046889          272 -----LDRVGIPYGNDGCKFLLTSRSRAACNQ  298 (333)
Q Consensus       272 -----~~~l~~~~~~~g~~vivTTr~~~v~~~  298 (333)
                           +..-....+..|+.+|++||-+.+...
T Consensus       506 ~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~  537 (580)
T COG4618         506 EGEAALAAAILAAKARGGTVVVIAHRPSALAS  537 (580)
T ss_pred             hHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence                 333334456679999999999988654

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.75  E-value=1.4e-08  Score=85.98  Aligned_cols=136  Identities=15%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP-----  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~-----  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.                .....+++.+     
T Consensus        13 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   90 (206)
T TIGR03608        13 ILDDLNLTIEKGK--MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN   90 (206)
T ss_pred             EEeceEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence            4445555556677  8999999999999999999976543210   000                0011122221     


Q ss_pred             -CH------------------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          221 -SI------------------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       221 -~~------------------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                       +.                  ......+++.+++....     ..+ .+.....+.+.|..++-+++||++.+..|    
T Consensus        91 ~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~  170 (206)
T TIGR03608        91 ETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNR  170 (206)
T ss_pred             CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHH
Confidence             11                  11123455555553211     112 23445668888889999999999987644    


Q ss_pred             --hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                        +..+.......|..||++||+..... ++++.
T Consensus       171 ~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i  203 (206)
T TIGR03608       171 DEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRV  203 (206)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEE
Confidence              22221222233778999999998764 44443

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.75  E-value=5.2e-08  Score=82.89  Aligned_cols=137  Identities=15%  Similarity=0.215  Sum_probs=80.3

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CHH------
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SIT------  223 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~~------  223 (333)
                      +...+..++  +++|+|++|+|||||++.+++...+...   |+.          .....+++.+      +..      
T Consensus        17 ~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~   94 (213)
T TIGR01277        17 FDLNVADGE--IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG   94 (213)
T ss_pred             eEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhH
Confidence            333445666  9999999999999999999987643221   100          1122233322      110      


Q ss_pred             ------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC
Q 046889          224 ------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY  279 (333)
Q Consensus       224 ------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~  279 (333)
                                  .....+++.+++...     ...+ .+...-.+...+..++-+++||++.+..|..      .+....
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~  174 (213)
T TIGR01277        95 LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQL  174 (213)
T ss_pred             hhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence                        112234444444211     1112 3344556777788889999999998764422      222222


Q ss_pred             C-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889          280 G-NDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       280 ~-~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      . ..|..||++||+......++++.+.+.
T Consensus       175 ~~~~~~tii~vsh~~~~~~~~~d~v~~l~  203 (213)
T TIGR01277       175 CSERQRTLLMVTHHLSDARAIASQIAVVS  203 (213)
T ss_pred             HHhcCCEEEEEeCCHHHHHhhcCeEEEEE
Confidence            2 237789999999998776666665443

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=8.5e-09  Score=90.28  Aligned_cols=141  Identities=15%  Similarity=0.183  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCC------C
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTP------S  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~------~  221 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+..++...   ++             ...+.++++.+      +
T Consensus        19 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   96 (255)
T PRK11300         19 LAVNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT   96 (255)
T ss_pred             EEEEeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence            34555665566677  9999999999999999999977543211   00             01123333332      1


Q ss_pred             HHH---------------------------------HHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEE
Q 046889          222 ITK---------------------------------IQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVI  262 (333)
Q Consensus       222 ~~~---------------------------------~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlV  262 (333)
                      ..+                                 ....+++.+++....     ..+ .+...-.+...+..++-+++
T Consensus        97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  176 (255)
T PRK11300         97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM  176 (255)
T ss_pred             HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            111                                 112233444442111     112 23445567888888999999


Q ss_pred             EeCCCCchhh------hhccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          263 LDDLWVQIEL------DRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       263 lDdv~~~~~~------~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ||++.+..|.      ..+...... .|..||++||+...+..++++.+.+
T Consensus       177 lDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  227 (255)
T PRK11300        177 LDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV  227 (255)
T ss_pred             EcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999877542      222222223 3778999999999887777766433

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.74  E-value=1.5e-08  Score=84.88  Aligned_cols=139  Identities=11%  Similarity=0.152  Sum_probs=82.3

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--HhhcC---CCe---------EEEEEeCCCCCH---HHHH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KEKKM---FDE---------VAMAVVSQTPSI---TKIQ  226 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~~~---f~~---------~~wv~v~~~~~~---~~~~  226 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+..  .+...   |+.         .....+++.+..   ..+.
T Consensus        23 ~~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~  100 (194)
T cd03213          23 QLLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVR  100 (194)
T ss_pred             cceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHH
Confidence            35666666666777  99999999999999999999875  43211   100         011223333211   1222


Q ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChH-HHhhc
Q 046889          227 DEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRA-ACNQM  299 (333)
Q Consensus       227 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~-v~~~~  299 (333)
                      +.+.......  .-...+.....+.+.+..++-+++||++.+..|..      .+.......|..||++||+.. ....+
T Consensus       101 ~~i~~~~~~~--~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~  178 (194)
T cd03213         101 ETLMFAAKLR--GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFEL  178 (194)
T ss_pred             HHHHHHHHhc--cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHh
Confidence            3322111110  12223445567888888999999999998764422      222222334788999999985 55556


Q ss_pred             ccceEec
Q 046889          300 QAHIVDV  306 (333)
Q Consensus       300 ~~~~~~l  306 (333)
                      +++.+.+
T Consensus       179 ~d~v~~l  185 (194)
T cd03213         179 FDKLLLL  185 (194)
T ss_pred             cCEEEEE
Confidence            6666444

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.74  E-value=2.3e-08  Score=87.66  Aligned_cols=141  Identities=15%  Similarity=0.268  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC------CH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------SI  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------~~  222 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.            .....+++.+      +.
T Consensus        16 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   93 (258)
T PRK13548         16 TLLDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV   93 (258)
T ss_pred             eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence            35566666666777  9999999999999999999977543211   000            0011222221      11


Q ss_pred             ------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHc------cCceEEEEeCCCCchhh
Q 046889          223 ------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIE------KQRVLVILDDLWVQIEL  272 (333)
Q Consensus       223 ------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~  272 (333)
                                        ......+++.+++...     ...+ .+.....+.+.|.      .++-+++||++.+..|.
T Consensus        94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~  173 (258)
T PRK13548         94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL  173 (258)
T ss_pred             HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence                              1122344555555321     1122 2344556777777      47899999999877542


Q ss_pred             h------hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 D------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .      .+..... ..|..||++||+...+..++++.+.+
T Consensus       174 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  214 (258)
T PRK13548        174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLL  214 (258)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEE
Confidence            2      2222222 34778999999998877766666433

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.74  E-value=2.1e-08  Score=82.29  Aligned_cols=163  Identities=16%  Similarity=0.212  Sum_probs=99.0

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-------------------------------CCC
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-------------------------------MFD  209 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------------------~f~  209 (333)
                      .....++.+...+.+++  +.+|+||||+|||||.+.+.+...+..                               .|.
T Consensus        12 ~Gr~ll~~vsl~~~pGe--v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp   89 (259)
T COG4559          12 AGRRLLDGVSLDLRPGE--VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP   89 (259)
T ss_pred             ecceeccCcceeccCCc--EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence            34456667777777888  999999999999999999998765432                               111


Q ss_pred             eEEEE-----EeC-----CCCCHHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHcc------CceEEEEeCCC
Q 046889          210 EVAMA-----VVS-----QTPSITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEK------QRVLVILDDLW  267 (333)
Q Consensus       210 ~~~wv-----~v~-----~~~~~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~------k~~LlVlDdv~  267 (333)
                      ..+|-     .++     +......+.++.+.+.+......     .+ -++..-.+.+.|.+      .+-.|.||++.
T Consensus        90 Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPt  169 (259)
T COG4559          90 FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPT  169 (259)
T ss_pred             eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCc
Confidence            11110     011     11122345566666655442222     22 23344456666653      33467899998


Q ss_pred             Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEecC------------CCCHHHHHHHHHhhcccC
Q 046889          268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR------------TLTEEESWRSAEGKRRVC  325 (333)
Q Consensus       268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~------------~L~~~e~~~lf~~~a~~~  325 (333)
                      +..|+.      .+...+...|+-|+++-|+-+.+..+++..+-|.            .|++|--...|-.....+
T Consensus       170 saLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg~~~~V~  245 (259)
T COG4559         170 SALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGADIRVG  245 (259)
T ss_pred             cccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhCCceeee
Confidence            875532      2223445557889999999999888887764332            366666666666555443

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.74  E-value=3.5e-08  Score=86.36  Aligned_cols=140  Identities=9%  Similarity=0.180  Sum_probs=84.4

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh----hcC---CC----------eEEEEEeCCCC----C--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE----KKM---FD----------EVAMAVVSQTP----S--  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~~~---f~----------~~~wv~v~~~~----~--  221 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+    ...   ++          .....++++.+    .  
T Consensus        18 il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~   95 (254)
T PRK10418         18 LVHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL   95 (254)
T ss_pred             eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence            4555655566777  9999999999999999999987543    111   00          01122333332    1  


Q ss_pred             --H----------------HHHHHHHHHHhCCCCC--------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889          222 --I----------------TKIQDEIAGWLGIKEL--------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-  273 (333)
Q Consensus       222 --~----------------~~~~~~i~~~l~~~~~--------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-  273 (333)
                        .                ......+++.+++...        ...+ .+...-.+.+.+..++-+++||++.+..|.. 
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~  175 (254)
T PRK10418         96 HTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA  175 (254)
T ss_pred             ccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence              0                0112334555555321        1112 3445567888888999999999998765422 


Q ss_pred             -----hccCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 -----RVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 -----~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                           .+.... ...|..||++||+.+....++++.+.+
T Consensus       176 ~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l  214 (254)
T PRK10418        176 QARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM  214 (254)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE
Confidence                 221222 223778999999998877666655333

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.74  E-value=2.3e-08  Score=87.93  Aligned_cols=140  Identities=12%  Similarity=0.187  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----C--CCe-----------------EEEEEeCCC
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----M--FDE-----------------VAMAVVSQT  219 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~--f~~-----------------~~wv~v~~~  219 (333)
                      ...++.+...+..++  +++|+|++|+|||||++.+.+...+..    .  |+.                 ....++++.
T Consensus        17 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~   94 (262)
T PRK09984         17 HQALHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ   94 (262)
T ss_pred             eEEEecceEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence            345666666667777  999999999999999999997764321    0  000                 001222222


Q ss_pred             CC------H--------------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEE
Q 046889          220 PS------I--------------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLV  261 (333)
Q Consensus       220 ~~------~--------------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~Ll  261 (333)
                      +.      .                          ......+++.+++...     ...+ .+.....+.+.+..++-+|
T Consensus        95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  174 (262)
T PRK09984         95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVI  174 (262)
T ss_pred             cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence            11      0                          0112334444554311     1112 3344556778888899999


Q ss_pred             EEeCCCCchhhh------hccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889          262 ILDDLWVQIELD------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       262 VlDdv~~~~~~~------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      +||++.+..|..      .+..... ..|..||++||+.+.+..++++.+
T Consensus       175 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~  224 (262)
T PRK09984        175 LADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIV  224 (262)
T ss_pred             EecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            999998775422      2222222 237789999999998766666553

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.74  E-value=1.3e-08  Score=97.83  Aligned_cols=141  Identities=13%  Similarity=0.164  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCC------C
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTP------S  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~------~  221 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+.+...+...   |+.             ....++++.+      +
T Consensus        18 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   95 (501)
T PRK10762         18 KALSGAALNVYPGR--VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT   95 (501)
T ss_pred             EEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence            45666666666777  9999999999999999999876543210   100             0011222211      0


Q ss_pred             H----------------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh-
Q 046889          222 I----------------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-  272 (333)
Q Consensus       222 ~----------------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-  272 (333)
                      .                      ......+++.+++......     + .+.....+...|..++-+++||++.+..|. 
T Consensus        96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~  175 (501)
T PRK10762         96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT  175 (501)
T ss_pred             HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence            0                      1123455666666432221     2 344566788889999999999999877542 


Q ss_pred             -----hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 -----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 -----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                           ..+.......|..||++||+.+.+..++++.+.|
T Consensus       176 ~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l  214 (501)
T PRK10762        176 ETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF  214 (501)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence                 2221222234778999999998877777666433

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.74  E-value=2.1e-08  Score=87.13  Aligned_cols=141  Identities=13%  Similarity=0.235  Sum_probs=83.3

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC-----
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP-----  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~-----  220 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |+               .....++++.+     
T Consensus        16 ~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   93 (243)
T TIGR02315        16 QALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER   93 (243)
T ss_pred             ceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence            35666666667777  9999999999999999999866432110   00               00011222221     


Q ss_pred             -CH--------------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          221 -SI--------------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       221 -~~--------------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                       +.                          ..-..++++.+++...     ...+ .+.....+.+.+..++-+++||++.
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  173 (243)
T TIGR02315        94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI  173 (243)
T ss_pred             ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence             10                          0112234444554311     1112 3344556888888899999999998


Q ss_pred             Cchhhh------hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIELD------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~~~------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|..      .+..... ..|..||++||+...+..+++..+.+
T Consensus       174 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l  219 (243)
T TIGR02315       174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGL  219 (243)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence            765422      2222222 23778999999999877776666444

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.73  E-value=1.9e-08  Score=88.18  Aligned_cols=140  Identities=14%  Similarity=0.201  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-------------CC-----------eEEEEEeCCCC
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-------------FD-----------EVAMAVVSQTP  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------f~-----------~~~wv~v~~~~  220 (333)
                      .++.+...+.+|+  +++|+|++|+|||||++.+++..++...             ..           .....++++.+
T Consensus        21 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~   98 (258)
T PRK11701         21 GCRDVSFDLYPGE--VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP   98 (258)
T ss_pred             eeeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence            4555666666777  9999999999999999999977543110             00           00122333332


Q ss_pred             C--------H-------------------HHHHHHHHHHhCCCC------CCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889          221 S--------I-------------------TKIQDEIAGWLGIKE------LPDND-ELVRASLLCKRIEKQRVLVILDDL  266 (333)
Q Consensus       221 ~--------~-------------------~~~~~~i~~~l~~~~------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv  266 (333)
                      .        .                   .....++++.++...      ....+ .+.....+.+.+..++-+++||++
T Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP  178 (258)
T PRK11701         99 RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP  178 (258)
T ss_pred             ccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            1        0                   011223455555531      11122 344556688888899999999999


Q ss_pred             CCchhhh------hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          267 WVQIELD------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       267 ~~~~~~~------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+..|..      .+..... ..|..||++||+...+..++++.+.+
T Consensus       179 t~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l  225 (258)
T PRK11701        179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM  225 (258)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence            8775422      2212222 23778999999999987766665333

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.73  E-value=8.7e-08  Score=88.72  Aligned_cols=138  Identities=17%  Similarity=0.191  Sum_probs=84.2

Q ss_pred             ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---------CC-----------eEEEE----
Q 046889          159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---------FD-----------EVAMA----  214 (333)
Q Consensus       159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---------f~-----------~~~wv----  214 (333)
                      +-+.--.+.++..-+..+.  .|++|||||+|||||.+.++.+..+...         |.           ...|.    
T Consensus       399 y~~~~~iy~~l~fgid~~s--rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~  476 (614)
T KOG0927|consen  399 YSDNPMIYKKLNFGIDLDS--RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFM  476 (614)
T ss_pred             CCCcchhhhhhhcccCccc--ceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHH
Confidence            3333356666666655455  7999999999999999999988754321         11           00000    


Q ss_pred             -EeCCCCCHHHHHHHHHHHhCCC-CCCCCCHH------HHHHHHHHHHccCceEEEEeCCCCchhhhhcc---CCCCC-C
Q 046889          215 -VVSQTPSITKIQDEIAGWLGIK-ELPDNDEL------VRASLLCKRIEKQRVLVILDDLWVQIELDRVG---IPYGN-D  282 (333)
Q Consensus       215 -~v~~~~~~~~~~~~i~~~l~~~-~~~~~~~~------~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~---~~~~~-~  282 (333)
                       ....+....+.++.|+.++|+. +.......      ...-.+...+-..+-+||||++.+..+...+-   -.+.. .
T Consensus       477 ~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~  556 (614)
T KOG0927|consen  477 MPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP  556 (614)
T ss_pred             HHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC
Confidence             0001113466788899999986 22222222      22334555556788999999999987765551   11222 2


Q ss_pred             CcEEEEeeCChHHHhhc
Q 046889          283 GCKFLLTSRSRAACNQM  299 (333)
Q Consensus       283 g~~vivTTr~~~v~~~~  299 (333)
                      |. ||++||+..+...+
T Consensus       557 Gg-vv~vSHDfrlI~qV  572 (614)
T KOG0927|consen  557 GG-VVLVSHDFRLISQV  572 (614)
T ss_pred             Cc-eeeeechhhHHHHH
Confidence            54 89999998764443

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.73  E-value=2.3e-08  Score=83.32  Aligned_cols=149  Identities=15%  Similarity=0.228  Sum_probs=94.0

Q ss_pred             ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe-------------EEEEEeCCCC
Q 046889          157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE-------------VAMAVVSQTP  220 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-------------~~wv~v~~~~  220 (333)
                      ...||....+..+...+..++  +++++|+||+|||||++.+++..+...   .|+.             .-..+|++..
T Consensus        10 ~~~YG~~~~L~gvsl~v~~Ge--iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR   87 (237)
T COG0410          10 SAGYGKIQALRGVSLEVERGE--IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGR   87 (237)
T ss_pred             eecccceeEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccc
Confidence            445677777777777777888  999999999999999999998876431   0110             0012333322


Q ss_pred             C------HHH-H----------------HHHHHHHh-------CCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889          221 S------ITK-I----------------QDEIAGWL-------GIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI  270 (333)
Q Consensus       221 ~------~~~-~----------------~~~i~~~l-------~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~  270 (333)
                      .      +++ +                .+.+++.|       +.....-+.-+++.-.+.+.|-.++.||+||++....
T Consensus        88 ~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GL  167 (237)
T COG0410          88 RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL  167 (237)
T ss_pred             cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCc
Confidence            1      100 0                11222222       1111122234566677899999999999999997542


Q ss_pred             ------hhhhccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889          271 ------ELDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       271 ------~~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                            ++........ ..|..|+++-+|...|..++++.|.|.
T Consensus       168 aP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle  211 (237)
T COG0410         168 APKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLE  211 (237)
T ss_pred             CHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEe
Confidence                  2323223333 336689999999999998888876554

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.73  E-value=1.1e-08  Score=88.26  Aligned_cols=141  Identities=22%  Similarity=0.286  Sum_probs=82.0

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCC------C
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTP------S  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~------~  221 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+..++...   ++             .....++++.+      +
T Consensus        14 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   91 (230)
T TIGR03410        14 HILRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT   91 (230)
T ss_pred             EEecceeeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence            35566666666777  9999999999999999999977543210   00             00011223321      1


Q ss_pred             HH---------------HHHHHHHHHhC-CCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889          222 IT---------------KIQDEIAGWLG-IKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD  273 (333)
Q Consensus       222 ~~---------------~~~~~i~~~l~-~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~  273 (333)
                      ..               .....+++.++ ...     ....+ .+.....+.+.+..++-+++||++.+..|      +.
T Consensus        92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~  171 (230)
T TIGR03410        92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG  171 (230)
T ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence            11               11122233332 111     11112 23345567788888899999999987644      22


Q ss_pred             hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          274 RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+...... .|..||++||+.+.+..++++.+.+
T Consensus       172 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l  205 (230)
T TIGR03410       172 RVIRRLRAEGGMAILLVEQYLDFARELADRYYVM  205 (230)
T ss_pred             HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEE
Confidence            22222222 3778999999999887766666433

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.73  E-value=5.4e-09  Score=88.12  Aligned_cols=138  Identities=17%  Similarity=0.236  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---------------CC-eEEEEEeCCCC------CH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---------------FD-EVAMAVVSQTP------SI  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---------------f~-~~~wv~v~~~~------~~  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...               +. ...+  +++.+      +.
T Consensus        15 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~--~~q~~~~~~~~tv   90 (201)
T cd03231          15 LFSGLSFTLAAGE--ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY--LGHAPGIKTTLSV   90 (201)
T ss_pred             eeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE--eccccccCCCcCH
Confidence            4555555566777  9999999999999999999876543210               00 0111  22211      11


Q ss_pred             ------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCC
Q 046889          223 ------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIP  278 (333)
Q Consensus       223 ------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~  278 (333)
                                  ......+++.+++.....     .+ .+.....+.+.+..++-+++||++.+..|      +..+...
T Consensus        91 ~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  170 (201)
T cd03231          91 LENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAG  170 (201)
T ss_pred             HHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence                        122344556666542211     12 23445668888888999999999987644      2222222


Q ss_pred             CCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          279 YGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       279 ~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ....|..+|++||+......++++.+.+
T Consensus       171 ~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         171 HCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             HHhCCCEEEEEecCchhhhhccceeEec
Confidence            2334778999999887666666655443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.73  E-value=1.7e-08  Score=85.03  Aligned_cols=143  Identities=15%  Similarity=0.234  Sum_probs=90.0

Q ss_pred             ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC------------------------------C
Q 046889          159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM------------------------------F  208 (333)
Q Consensus       159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~------------------------------f  208 (333)
                      .|+....++++...+..+.  .+.++|++|+||||+++.|....++...                              |
T Consensus        10 ~y~~~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF   87 (309)
T COG1125          10 RYGNKKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF   87 (309)
T ss_pred             hcCCceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccC
Confidence            3445556666776677777  8999999999999999999876654321                              1


Q ss_pred             CeE-EEE---EeC--CCCC---HHHHHHHHHHHhCCCC--CCC------CCHHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889          209 DEV-AMA---VVS--QTPS---ITKIQDEIAGWLGIKE--LPD------NDELVRASLLCKRIEKQRVLVILDDLWVQIE  271 (333)
Q Consensus       209 ~~~-~wv---~v~--~~~~---~~~~~~~i~~~l~~~~--~~~------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~  271 (333)
                      +.. ++-   .|+  ...+   ..+-..+++..+++++  +..      +..++++-.+.+.|...+-++++|++....+
T Consensus        88 Ph~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALD  167 (309)
T COG1125          88 PHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD  167 (309)
T ss_pred             CCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccC
Confidence            100 000   000  0011   2334556677777742  111      2234556778899999999999999886533


Q ss_pred             ------hhhccCC-CCCCCcEEEEeeCChHHHhhcccce
Q 046889          272 ------LDRVGIP-YGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       272 ------~~~l~~~-~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                            +...... ...-|..||++||+.+.|-.++++.
T Consensus       168 pI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri  206 (309)
T COG1125         168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRI  206 (309)
T ss_pred             hhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceE
Confidence                  2111111 1233788999999999988888877

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.73  E-value=2e-08  Score=86.39  Aligned_cols=141  Identities=16%  Similarity=0.249  Sum_probs=83.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC-------eEEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD-------EVAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~-------~~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...           ..       .....++++.+      
T Consensus        20 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (228)
T cd03257          20 ALDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP   97 (228)
T ss_pred             eecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence            4566666666777  9999999999999999999876532110           00       00111222221      


Q ss_pred             --CHHH----------------H----HHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889          221 --SITK----------------I----QDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE  271 (333)
Q Consensus       221 --~~~~----------------~----~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~  271 (333)
                        +..+                .    ...++..+++. ..     ...+ .+...-.+.+.+..++-+++||++.+..|
T Consensus        98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD  177 (228)
T cd03257          98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD  177 (228)
T ss_pred             cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence              1100                0    01344555542 11     1112 23445567888888999999999987644


Q ss_pred             ------hhhccCCCCCC-CcEEEEeeCChHHHhhcccceEecC
Q 046889          272 ------LDRVGIPYGND-GCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       272 ------~~~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                            +..+....... |..||++||+.+.+..++++.+.++
T Consensus       178 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~  220 (228)
T cd03257         178 VSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY  220 (228)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEe
Confidence                  22222222222 7789999999998877777765554

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.73  E-value=1.1e-08  Score=93.58  Aligned_cols=138  Identities=14%  Similarity=0.204  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC--------eEEEEEeCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD--------EVAMAVVSQTP-----  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~--------~~~wv~v~~~~-----  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...           ..        .....++.|.+     
T Consensus         8 ~l~~vs~~i~~Ge--i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~   85 (363)
T TIGR01186         8 GVNDADLAIAKGE--IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH   85 (363)
T ss_pred             eEEeeEEEEcCCC--EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence            3444455555677  9999999999999999999977643211           00        11122233322     


Q ss_pred             -CH------------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          221 -SI------------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       221 -~~------------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                       ++                  .....++++.+++......     + -+...-.+.+.|..++-+++||++.+..|    
T Consensus        86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r  165 (363)
T TIGR01186        86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR  165 (363)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence             11                  1122345566666422222     2 23445668899999999999999987644    


Q ss_pred             --hhhccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889          272 --LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       272 --~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                        +..+..... ..|..||++||+.+.+..++++.+
T Consensus       166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~  201 (363)
T TIGR01186       166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIV  201 (363)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence              222222222 337789999999998877777663

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.73  E-value=6.3e-08  Score=79.96  Aligned_cols=130  Identities=16%  Similarity=0.190  Sum_probs=77.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-----------------EeCCCCCHHHHHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-----------------VVSQTPSITKIQD  227 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-----------------~v~~~~~~~~~~~  227 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+..   ..+++                 ++++.+....  .
T Consensus        17 ~l~~i~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~   89 (178)
T cd03247          17 VLKNLSLELKQGE--KIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGVPVSDLEKALSSLISVLNQRPYLFD--T   89 (178)
T ss_pred             ceEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCEEHHHHHHHHHhhEEEEccCCeeec--c
Confidence            3444445555677  899999999999999999998754321   11211                 1122211100  0


Q ss_pred             HHHHHhCCCCCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcc
Q 046889          228 EIAGWLGIKELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQ  300 (333)
Q Consensus       228 ~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~  300 (333)
                      .+.+.+    ....+ .+.....+.+.+..++-+++||++.+..|..      .+..... .+..||++||+..... .+
T Consensus        90 tv~~~i----~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~  163 (178)
T cd03247          90 TLRNNL----GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE-HM  163 (178)
T ss_pred             cHHHhh----cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hC
Confidence            111111    11122 3445667888888999999999998764422      2222222 3678999999999876 35


Q ss_pred             cceEecC
Q 046889          301 AHIVDVR  307 (333)
Q Consensus       301 ~~~~~l~  307 (333)
                      ++.+.+.
T Consensus       164 d~~~~l~  170 (178)
T cd03247         164 DKILFLE  170 (178)
T ss_pred             CEEEEEE
Confidence            5555443

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.73  E-value=7e-08  Score=82.70  Aligned_cols=131  Identities=20%  Similarity=0.311  Sum_probs=78.0

Q ss_pred             hcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------EEEEEeCCCCC--------H-------------
Q 046889          174 KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------VAMAVVSQTPS--------I-------------  222 (333)
Q Consensus       174 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------~~wv~v~~~~~--------~-------------  222 (333)
                      .+++  +++|+|++|+|||||++.+.+...+...   |+.       ....++++.+.        .             
T Consensus         4 ~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~   81 (223)
T TIGR03771         4 DKGE--LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG   81 (223)
T ss_pred             CCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence            3455  9999999999999999999976543210   000       00112222110        0             


Q ss_pred             ---------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCC
Q 046889          223 ---------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGN  281 (333)
Q Consensus       223 ---------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~  281 (333)
                               ......+++.+++.....     .+ .+.....+.+.+..++.++++|++.+..|      +..+......
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~  161 (223)
T TIGR03771        82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG  161 (223)
T ss_pred             cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence                     112334455566542111     12 23345578888889999999999987644      2222222233


Q ss_pred             CCcEEEEeeCChHHHhhcccceEec
Q 046889          282 DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .|..||++||+.+....++++.+.+
T Consensus       162 ~~~tvii~sH~~~~~~~~~d~i~~l  186 (223)
T TIGR03771       162 AGTAILMTTHDLAQAMATCDRVVLL  186 (223)
T ss_pred             cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4778999999999776666665333

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.72  E-value=3.5e-07  Score=94.31  Aligned_cols=159  Identities=11%  Similarity=0.142  Sum_probs=97.8

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeC-CCCCHHHHHHHHHHHhC
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS-QTPSITKIQDEIAGWLG  234 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~  234 (333)
                      ...++-|...++.|..   ....+++.|.||+|.||||++......      +..+.|+++. .+.++..+...++..++
T Consensus        13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~   83 (903)
T PRK04841         13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ   83 (903)
T ss_pred             ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence            3556777777776653   234569999999999999999987742      2268899996 44566666666666663


Q ss_pred             CCCCC-------------CCCHHHHHHHHHHHHc--cCceEEEEeCCCCchh-----hhhccCCCCCCCcEEEEeeCChH
Q 046889          235 IKELP-------------DNDELVRASLLCKRIE--KQRVLVILDDLWVQIE-----LDRVGIPYGNDGCKFLLTSRSRA  294 (333)
Q Consensus       235 ~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~-----~~~l~~~~~~~g~~vivTTr~~~  294 (333)
                      .....             ..+.......+...+.  ..+.+|||||+....+     +-...+.....+.++|||||...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~  163 (903)
T PRK04841         84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP  163 (903)
T ss_pred             HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence            21000             0122233334444443  5789999999975421     11111232334667889999843


Q ss_pred             HH--hh--cccceEecC----CCCHHHHHHHHHhhcc
Q 046889          295 AC--NQ--MQAHIVDVR----TLTEEESWRSAEGKRR  323 (333)
Q Consensus       295 v~--~~--~~~~~~~l~----~L~~~e~~~lf~~~a~  323 (333)
                      -.  ..  .......+.    +|+.+|+.+||.....
T Consensus       164 ~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~  200 (903)
T PRK04841        164 PLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLS  200 (903)
T ss_pred             CCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccC
Confidence            11  11  112224444    8999999999987654

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.72  E-value=1.8e-08  Score=87.39  Aligned_cols=140  Identities=13%  Similarity=0.223  Sum_probs=83.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.               .....+++.+      
T Consensus        16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   93 (241)
T cd03256          16 ALKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL   93 (241)
T ss_pred             EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence            4555555566777  9999999999999999999876532110   000               0111222221      


Q ss_pred             CHH--------------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          221 SIT--------------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       221 ~~~--------------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                      +..                          .....+++.+++...     ...+ .+.....+.+.+..++-+++||++.+
T Consensus        94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~  173 (241)
T cd03256          94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA  173 (241)
T ss_pred             cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence            111                          112234445554311     1112 33445567888888999999999987


Q ss_pred             chh------hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          269 QIE------LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       269 ~~~------~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|      +..+..... ..|..||++||+.+.+..++++.+.+
T Consensus       174 ~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l  218 (241)
T cd03256         174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGL  218 (241)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            644      222222222 23778999999999888777776444

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=1.5e-08  Score=90.16  Aligned_cols=140  Identities=14%  Similarity=0.224  Sum_probs=85.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP-----  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~-----  220 (333)
                      .++.+...+..|+  +++|+|+||+|||||++.+.+...+...   ++.                ....++.+.+     
T Consensus        22 ~l~~vsl~i~~Ge--~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~   99 (287)
T PRK13641         22 GLDNISFELEEGS--FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF   99 (287)
T ss_pred             ceeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence            5566666666777  9999999999999999999977543211   000                0112223321     


Q ss_pred             --CHH------------------HHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh-
Q 046889          221 --SIT------------------KIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-  272 (333)
Q Consensus       221 --~~~------------------~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-  272 (333)
                        +..                  .....+++.+++. ..     ...+ -+..+..|.+.|..++-+|+||++.+..|. 
T Consensus       100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~  179 (287)
T PRK13641        100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE  179 (287)
T ss_pred             cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence              110                  1123344555553 11     1112 344566788888889999999999877542 


Q ss_pred             -----hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 -----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 -----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                           ..+.......|..||++||+.+.+..++++.+.|
T Consensus       180 ~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l  218 (287)
T PRK13641        180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVL  218 (287)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence                 2222222334788999999999887777766433

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.72  E-value=5.1e-08  Score=83.02  Aligned_cols=128  Identities=19%  Similarity=0.266  Sum_probs=77.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC------CHH----------
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP------SIT----------  223 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~------~~~----------  223 (333)
                      .+++|+|++|+|||||++.+.+...+...   |+                .....++++.+      +..          
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~  103 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK  103 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence            49999999999999999999876543210   00                00112233332      111          


Q ss_pred             ------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCC-CCc
Q 046889          224 ------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGN-DGC  284 (333)
Q Consensus       224 ------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~-~g~  284 (333)
                            .....+++.+++...     ...+ .+.....+.+.+..++-+++||++.+..|..      .+...... .|.
T Consensus       104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~  183 (214)
T cd03297         104 RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI  183 (214)
T ss_pred             CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence                  112334555555311     1122 3445566888888999999999998775422      22222222 277


Q ss_pred             EEEEeeCChHHHhhcccceEec
Q 046889          285 KFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       285 ~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .||++||+.+....+++..+.+
T Consensus       184 tiii~sH~~~~~~~~~d~i~~l  205 (214)
T cd03297         184 PVIFVTHDLSEAEYLADRIVVM  205 (214)
T ss_pred             EEEEEecCHHHHHHhcCEEEEE
Confidence            8999999999877776666544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.72  E-value=2.1e-08  Score=87.12  Aligned_cols=140  Identities=19%  Similarity=0.202  Sum_probs=83.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--Hhh-c----------CCC----eEE-EEEeCCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KEK-K----------MFD----EVA-MAVVSQTPS-----  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~-~----------~f~----~~~-wv~v~~~~~-----  221 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+..  .+. +          ...    ... ...+++.+.     
T Consensus        15 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (243)
T TIGR01978        15 ILKGVNLTVKKGE--IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV   92 (243)
T ss_pred             EEeccceEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence            4556666666777  99999999999999999999863  111 1          000    000 122333321     


Q ss_pred             -HH-------------------------HHHHHHHHHhCCC-CC-----C-CCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 -IT-------------------------KIQDEIAGWLGIK-EL-----P-DND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 -~~-------------------------~~~~~i~~~l~~~-~~-----~-~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                       ..                         .....++..+++. ..     . ..+ .+...-.+...+..++-+++||++.
T Consensus        93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  172 (243)
T TIGR01978        93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID  172 (243)
T ss_pred             CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence             10                         1123344445553 11     1 122 3344566888888899999999998


Q ss_pred             Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhc-ccceEec
Q 046889          268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQM-QAHIVDV  306 (333)
Q Consensus       268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~-~~~~~~l  306 (333)
                      +..|      +..+.......|..||++||+.+.+..+ ++..+.+
T Consensus       173 ~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l  218 (243)
T TIGR01978       173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVL  218 (243)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEE
Confidence            7644      2222222233477899999999988776 5655434

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.72  E-value=1.5e-08  Score=90.54  Aligned_cols=137  Identities=19%  Similarity=0.282  Sum_probs=88.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC-----------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP-----------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~-----------  220 (333)
                      .++.+...+.+++  .++++||+|+|||||++.|.+-..+.+.   ++.          +-...|.|++           
T Consensus        18 ~l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N   95 (338)
T COG3839          18 VLKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN   95 (338)
T ss_pred             eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence            5556666667788  8999999999999999999987664321   000          1111222222           


Q ss_pred             -------------CHHHHHHHHHHHhCCCCC------CCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhh------h-
Q 046889          221 -------------SITKIQDEIAGWLGIKEL------PDNDELVRASLLCKRIEKQRVLVILDDLWVQIELD------R-  274 (333)
Q Consensus       221 -------------~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~-  274 (333)
                                   ....-.+++++.+++...      .-+..+.+.-.+.+.|-.++-+++||++-+..|..      . 
T Consensus        96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~e  175 (338)
T COG3839          96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE  175 (338)
T ss_pred             hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHH
Confidence                         123334566666666521      11223455667889999999999999998754311      1 


Q ss_pred             ccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          275 VGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      +.......|..+|.+||+...|-.++++.
T Consensus       176 i~~lh~~l~~T~IYVTHDq~EAmtladri  204 (338)
T COG3839         176 IKKLHERLGTTTIYVTHDQVEAMTLADRI  204 (338)
T ss_pred             HHHHHHhcCCcEEEEcCCHHHHHhhCCEE
Confidence            11112233788999999999998888887

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.72  E-value=1.9e-08  Score=87.32  Aligned_cols=139  Identities=12%  Similarity=0.178  Sum_probs=82.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC-----eEEEEEeCCCC------CH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD-----EVAMAVVSQTP------SI  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~-----~~~wv~v~~~~------~~  222 (333)
                      .++.+...+.+++  +++|+|+||+|||||++.+.+...+...           ..     .....++++.+      +.
T Consensus        17 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   94 (242)
T TIGR03411        17 ALNDLSLYVDPGE--LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV   94 (242)
T ss_pred             EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence            4455555556677  8999999999999999999976533210           00     00011122221      11


Q ss_pred             --------------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889          223 --------------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQI  270 (333)
Q Consensus       223 --------------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~  270 (333)
                                                ......+++.+++.....     .+ .+...-.+.+.+..++-+++||++.+..
T Consensus        95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~L  174 (242)
T TIGR03411        95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM  174 (242)
T ss_pred             HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCC
Confidence                                      112234455555532111     11 2344566888888899999999998775


Q ss_pred             hhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          271 ELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       271 ~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      |..      .+...... +..||++||+.+.+..++++.+.+
T Consensus       175 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l  215 (242)
T TIGR03411       175 TDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVL  215 (242)
T ss_pred             CHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEE
Confidence            422      22122222 567999999999887777766444

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.72  E-value=7.4e-08  Score=88.17  Aligned_cols=133  Identities=20%  Similarity=0.249  Sum_probs=81.9

Q ss_pred             HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC------CH----
Q 046889          172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP------SI----  222 (333)
Q Consensus       172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~------~~----  222 (333)
                      .+..++  +++|+|++|+|||||++.+.+...+...   ++.                ....++.+.+      +.    
T Consensus        20 ~i~~Ge--~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl   97 (352)
T PRK11144         20 TLPAQG--ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNL   97 (352)
T ss_pred             EEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHH
Confidence            344566  9999999999999999999977543210   000                0112233332      11    


Q ss_pred             --------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCC-C
Q 046889          223 --------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYG-N  281 (333)
Q Consensus       223 --------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~-~  281 (333)
                              ......+++.+++....     ..+ -+.....|.+.|..++-+++||++.+..|.      ..+..... .
T Consensus        98 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~  177 (352)
T PRK11144         98 RYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE  177 (352)
T ss_pred             HhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence                    11234556666664211     122 344566788899999999999999876442      22212222 2


Q ss_pred             CCcEEEEeeCChHHHhhcccceEec
Q 046889          282 DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .|..||++||+.+.+..++++.+.|
T Consensus       178 ~g~tii~vTHd~~~~~~~~d~i~~l  202 (352)
T PRK11144        178 INIPILYVSHSLDEILRLADRVVVL  202 (352)
T ss_pred             cCCeEEEEecCHHHHHHhCCEEEEE
Confidence            3778999999999887777766444

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.72  E-value=1.3e-08  Score=88.08  Aligned_cols=140  Identities=12%  Similarity=0.208  Sum_probs=82.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------Ce--EEEEEeCCCC------CHH--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------DE--VAMAVVSQTP------SIT--  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~~--~~wv~v~~~~------~~~--  223 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   +        ..  ....++++.+      +..  
T Consensus        15 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en   92 (237)
T TIGR00968        15 ALDDVNLEVPTGS--LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDN   92 (237)
T ss_pred             eeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHH
Confidence            4445555556677  9999999999999999999976543210   0        00  0111222221      111  


Q ss_pred             ----------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hc
Q 046889          224 ----------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RV  275 (333)
Q Consensus       224 ----------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l  275 (333)
                                      ....++++.+++...     ...+ .+...-.+.+.+..++-+++||++.+..|..      .+
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~  172 (237)
T TIGR00968        93 IAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSW  172 (237)
T ss_pred             HHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence                            112344455554311     1112 2344556778888899999999998764422      22


Q ss_pred             cCCCCCC-CcEEEEeeCChHHHhhcccceEec
Q 046889          276 GIPYGND-GCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       276 ~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ....... |..||++||+...+..++++.+.+
T Consensus       173 l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l  204 (237)
T TIGR00968       173 LRKLHDEVHVTTVFVTHDQEEAMEVADRIVVM  204 (237)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEE
Confidence            2222223 778999999999877777766444

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.72  E-value=1.2e-08  Score=88.33  Aligned_cols=137  Identities=15%  Similarity=0.255  Sum_probs=87.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc------------------------------CCCeEEEE
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK------------------------------MFDEVAMA  214 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~------------------------------~f~~~~wv  214 (333)
                      .++++...+..|+  +.+|+|.+|+|||||.|.+..-.++..                              ||..----
T Consensus        21 al~~vsL~I~~Ge--I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr   98 (339)
T COG1135          21 ALDDVSLEIPKGE--IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR   98 (339)
T ss_pred             eeccceEEEcCCc--EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence            4455555566777  999999999999999999986654422                              11110000


Q ss_pred             EeCCC------------CCHHHHHHHHHHHhCCCCCCCCCH------HHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889          215 VVSQT------------PSITKIQDEIAGWLGIKELPDNDE------LVRASLLCKRIEKQRVLVILDDLWVQIEL----  272 (333)
Q Consensus       215 ~v~~~------------~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----  272 (333)
                      +|.++            .....-...+++.+|+.+.....+      +.++-.|.+.|..++-+|+.|++.+..|-    
T Consensus        99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~  178 (339)
T COG1135          99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ  178 (339)
T ss_pred             hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence            01000            011233445666777764443332      34566799999999999999999887552    


Q ss_pred             --hhccCCC-CCCCcEEEEeeCChHHHhhcccce
Q 046889          273 --DRVGIPY-GNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       273 --~~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                        -.+.... ...|-.|+++||..+|...+|++.
T Consensus       179 sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rV  212 (339)
T COG1135         179 SILELLKDINRELGLTIVLITHEMEVVKRICDRV  212 (339)
T ss_pred             HHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhh
Confidence              2221212 223889999999999988888776

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=6.1e-08  Score=88.41  Aligned_cols=140  Identities=12%  Similarity=0.225  Sum_probs=84.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+...+...   |+               .....++++.+      
T Consensus        20 il~~vsl~i~~Ge--i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~   97 (343)
T PRK11153         20 ALNNVSLHIPAGE--IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR   97 (343)
T ss_pred             EEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence            3445555556677  9999999999999999999877543210   00               00011222221      


Q ss_pred             CH------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889          221 SI------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL----  272 (333)
Q Consensus       221 ~~------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----  272 (333)
                      +.                  ......+++.+++.....     .+ -+.....+.+.|..++-+++||++.+..|.    
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~  177 (343)
T PRK11153         98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR  177 (343)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            11                  012234556666542211     12 344556788888899999999999877542    


Q ss_pred             --hhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 --DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 --~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                        ..+..... ..|..||++||+.+.+..++++.+.|
T Consensus       178 ~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l  214 (343)
T PRK11153        178 SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVI  214 (343)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              22222222 23778999999999887776666433

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=5.5e-09  Score=95.89  Aligned_cols=146  Identities=20%  Similarity=0.239  Sum_probs=89.6

Q ss_pred             ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe---E--EEEEeCC---------------
Q 046889          159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE---V--AMAVVSQ---------------  218 (333)
Q Consensus       159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~---~--~wv~v~~---------------  218 (333)
                      .||....+..-...|..|+  ..++||+||+|||||++.+.+-.-  ..|..   +  ..+...+               
T Consensus        89 a~G~k~LL~~a~L~L~~Gr--RYGLvGrNG~GKsTLLRaia~~~v--~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~  164 (582)
T KOG0062|consen   89 AYGGKILLNKANLTLSRGR--RYGLVGRNGIGKSTLLRAIANGQV--SGFHVEQEVRGDDTEALQSVLESDTERLDFLAE  164 (582)
T ss_pred             eecchhhhcCCceeeeccc--ccceeCCCCCcHHHHHHHHHhcCc--CccCchhheeccchHHHhhhhhccHHHHHHHHh
Confidence            4676666555555555566  799999999999999999987211  12221   0  0110000               


Q ss_pred             C------CCHHHHHHHHHHHhCCCC----CCCCC---HHHHHHHHHHHHccCceEEEEeCCCCchhhhhccC---CCCCC
Q 046889          219 T------PSITKIQDEIAGWLGIKE----LPDND---ELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGI---PYGND  282 (333)
Q Consensus       219 ~------~~~~~~~~~i~~~l~~~~----~~~~~---~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~---~~~~~  282 (333)
                      .      ....++...++..+|.++    .+..+   .=.+.-.|.+.+-.++-||+||++.|..|...+..   -+...
T Consensus       165 e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~  244 (582)
T KOG0062|consen  165 EKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW  244 (582)
T ss_pred             hhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC
Confidence            0      011222222444555431    11111   11245678899999999999999999987665521   11233


Q ss_pred             CcEEEEeeCChHHHhhcccceEecCC
Q 046889          283 GCKFLLTSRSRAACNQMQAHIVDVRT  308 (333)
Q Consensus       283 g~~vivTTr~~~v~~~~~~~~~~l~~  308 (333)
                      +..+||+||++.+.+.+++.+|+++.
T Consensus       245 ~~T~liVSHDr~FLn~V~tdIIH~~~  270 (582)
T KOG0062|consen  245 KITSLIVSHDRNFLNTVCTDIIHLEN  270 (582)
T ss_pred             CceEEEEeccHHHHHHHHHHHHHHhh
Confidence            56799999999999988888766554

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.71  E-value=6.9e-08  Score=84.30  Aligned_cols=140  Identities=16%  Similarity=0.234  Sum_probs=84.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--------------CCeEE--------------EEEe
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--------------FDEVA--------------MAVV  216 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--------------f~~~~--------------wv~v  216 (333)
                      .++.+. .+.+++  +++|+|++|+|||||++.+.+..++...              |+..-              ...+
T Consensus        16 ~l~~i~-~i~~Ge--~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~   92 (255)
T cd03236          16 KLHRLP-VPREGQ--VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK   92 (255)
T ss_pred             hhhcCC-CCCCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence            556665 355677  9999999999999999999877653211              11100              0001


Q ss_pred             CCCC------------------CHHHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          217 SQTP------------------SITKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       217 ~~~~------------------~~~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                      .+..                  .......++++.+++......     + .+.....+.+.+..++-+++||++.+..+.
T Consensus        93 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~  172 (255)
T cd03236          93 PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI  172 (255)
T ss_pred             cchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence            1110                  112234455666665421111     1 233455677778888899999999877543


Q ss_pred             h------hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          273 D------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       273 ~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .      .+.......|+.||++||+...+..+++..+.+.
T Consensus       173 ~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~  213 (255)
T cd03236         173 KQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY  213 (255)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC
Confidence            2      2222222336789999999998887777664443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.71  E-value=2.9e-08  Score=98.02  Aligned_cols=141  Identities=19%  Similarity=0.342  Sum_probs=84.3

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-EEEEeCCCC------CH--------
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-AMAVVSQTP------SI--------  222 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-~wv~v~~~~------~~--------  222 (333)
                      |....++.+...+..|+  +++|+|+||+|||||++.+.+...+...   +... ...++++.+      ..        
T Consensus        14 ~~~~il~~is~~i~~Ge--~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~   91 (635)
T PRK11147         14 SDAPLLDNAELHIEDNE--RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGI   91 (635)
T ss_pred             CCceeEeCcEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhh
Confidence            43446666776677777  9999999999999999999987543211   1110 001111110      00        


Q ss_pred             --------------------------------------------HHHHHHHHHHhCCCC---CCCCC-HHHHHHHHHHHH
Q 046889          223 --------------------------------------------TKIQDEIAGWLGIKE---LPDND-ELVRASLLCKRI  254 (333)
Q Consensus       223 --------------------------------------------~~~~~~i~~~l~~~~---~~~~~-~~~~~~~l~~~l  254 (333)
                                                                  ..-...++..+++..   ....+ .+.....|.+.|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL  171 (635)
T PRK11147         92 EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRAL  171 (635)
T ss_pred             HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHH
Confidence                                                        001122333344321   11112 234566788888


Q ss_pred             ccCceEEEEeCCCCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          255 EKQRVLVILDDLWVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       255 ~~k~~LlVlDdv~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..++-+|+||++.+..|...      +....   +..||++||+...+..++++.+.|
T Consensus       172 ~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~l~~~~d~i~~L  226 (635)
T PRK11147        172 VSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIRNMATRIVDL  226 (635)
T ss_pred             hcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhcCeEEEE
Confidence            89999999999998865332      21222   236999999999988877766444

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.71  E-value=1.7e-07  Score=84.34  Aligned_cols=156  Identities=15%  Similarity=0.117  Sum_probs=89.7

Q ss_pred             ccccchHHHHHHHHHHhh-----cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMK-----DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      ..|+|++..++.|..++.     .+....+.++||.|+|||+|++.+.+.....  +   .....+....... +...+.
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l~   77 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAILT   77 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHHH
Confidence            568999999999988885     2344568899999999999999998876421  1   1122111111122 222233


Q ss_pred             HhCCCC------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhcc---cc
Q 046889          232 WLGIKE------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQ---AH  302 (333)
Q Consensus       232 ~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~---~~  302 (333)
                      .++...      ....+ ......+...+.+.+..+|+++..+...+... .|   ..+-|..||+...+...+.   ..
T Consensus        78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~-~~---~~~li~~t~~~~~l~~~l~sR~~~  152 (305)
T TIGR00635        78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRLD-LP---PFTLVGATTRAGMLTSPLRDRFGI  152 (305)
T ss_pred             hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceeec-CC---CeEEEEecCCccccCHHHHhhcce
Confidence            333211      01111 12233455555566666666665544433322 11   1455556666544322221   23


Q ss_pred             eEecCCCCHHHHHHHHHhhcc
Q 046889          303 IVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       303 ~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      .+.+++++.++..+++.+.+.
T Consensus       153 ~~~l~~l~~~e~~~il~~~~~  173 (305)
T TIGR00635       153 ILRLEFYTVEELAEIVSRSAG  173 (305)
T ss_pred             EEEeCCCCHHHHHHHHHHHHH
Confidence            378999999999999998764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.71  E-value=1.9e-08  Score=87.05  Aligned_cols=139  Identities=16%  Similarity=0.254  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCCC------HH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTPS------IT-  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~~------~~-  223 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+..++...   ++.           .....+++.+.      .. 
T Consensus        16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~   93 (236)
T TIGR03864        16 ALDDVSFTVRPGE--FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQ   93 (236)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHH
Confidence            4455555566777  9999999999999999999976543211   000           01122333221      10 


Q ss_pred             -----------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------h
Q 046889          224 -----------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------R  274 (333)
Q Consensus       224 -----------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~  274 (333)
                                       .....+++.+++....     ..+ .+.....+...+..++-+++||++.+..|..      .
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~  173 (236)
T TIGR03864        94 NLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVA  173 (236)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence                             1123345555553211     122 2334556888888899999999998764422      2


Q ss_pred             ccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          275 VGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       275 l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..... ..|..||++||+.+.+.. +++.+.|
T Consensus       174 ~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l  205 (236)
T TIGR03864       174 HVRALCRDQGLSVLWATHLVDEIEA-DDRLVVL  205 (236)
T ss_pred             HHHHHHHhCCCEEEEEecChhhHhh-CCEEEEE
Confidence            222222 247789999999988764 5555444

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=9.8e-08  Score=85.03  Aligned_cols=140  Identities=16%  Similarity=0.221  Sum_probs=84.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP-----  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~-----  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.                ....++.+.+     
T Consensus        21 ~l~~vsl~i~~Ge--~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~   98 (288)
T PRK13643         21 ALFDIDLEVKKGS--YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF   98 (288)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence            4555555566777  9999999999999999999977543221   000                0012233322     


Q ss_pred             --CH------------------HHHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889          221 --SI------------------TKIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD  273 (333)
Q Consensus       221 --~~------------------~~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~  273 (333)
                        +.                  ......+++.+++. ....     .+ -+.....+...|..++-+++||++.+..|..
T Consensus        99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~  178 (288)
T PRK13643         99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK  178 (288)
T ss_pred             cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence              00                  01123445555653 1111     12 3445667888888999999999998765422


Q ss_pred             ------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                            .+.......|..||++||+.+.+..++++.+.|
T Consensus       179 ~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l  217 (288)
T PRK13643        179 ARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLL  217 (288)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence                  221222234778999999999877766666433

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.71  E-value=3.2e-08  Score=84.91  Aligned_cols=140  Identities=14%  Similarity=0.245  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCC-----C
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTP-----S  221 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~-----~  221 (333)
                      ...++.+...+.+++  +++|+|++|+|||||++.+.+..++...   ++             ..+ ..+++.+     +
T Consensus        20 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~l~~~t   96 (225)
T PRK10247         20 AKILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV-SYCAQTPTLFGDT   96 (225)
T ss_pred             ceeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc-EEEeccccccccc
Confidence            345666666666777  9999999999999999999986543211   00             011 1122221     1


Q ss_pred             H----------------HHHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-----
Q 046889          222 I----------------TKIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-----  273 (333)
Q Consensus       222 ~----------------~~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-----  273 (333)
                      .                ......+++.+++.. .     ...+ .+...-.+.+.|..++-+++||++.+..|..     
T Consensus        97 v~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l  176 (225)
T PRK10247         97 VYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV  176 (225)
T ss_pred             HHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            1                112234556666531 1     1112 2344566888888999999999998765422     


Q ss_pred             -hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 -RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 -~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                       .+..... ..|..||++||+.+... .+++.+.+
T Consensus       177 ~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l  210 (225)
T PRK10247        177 NEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITL  210 (225)
T ss_pred             HHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEE
Confidence             2222222 23778999999998875 45655555

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.71  E-value=4.6e-08  Score=83.10  Aligned_cols=138  Identities=12%  Similarity=0.217  Sum_probs=81.5

Q ss_pred             HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH------
Q 046889          168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI------  222 (333)
Q Consensus       168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~------  222 (333)
                      .+...+.+++  +++|+|++|+|||||++.+.+...+...   ++.          ....++++.+      +.      
T Consensus        16 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~   93 (211)
T cd03298          16 HFDLTFAQGE--ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL   93 (211)
T ss_pred             ceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence            3444455677  9999999999999999999876543211   000          0011222221      11      


Q ss_pred             ------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCC
Q 046889          223 ------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIP  278 (333)
Q Consensus       223 ------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~  278 (333)
                                  ......+++.+++...     ...+ .+.....+.+.+..++-+++||++.+..|.      ..+...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~  173 (211)
T cd03298          94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD  173 (211)
T ss_pred             ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence                        1122344555554311     1112 234455677888889999999999876442      222222


Q ss_pred             CC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889          279 YG-NDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       279 ~~-~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .. ..|..||++||+...+..++++.+.++
T Consensus       174 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~  203 (211)
T cd03298         174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLD  203 (211)
T ss_pred             HHHhcCCEEEEEecCHHHHHhhhCEEEEEE
Confidence            22 237789999999998877777665443

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=2.2e-08  Score=89.11  Aligned_cols=140  Identities=16%  Similarity=0.284  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP-----  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~-----  220 (333)
                      .++.+...+..|+  +++|+|++|+|||||++.+++...+...   ++.                .....+++.+     
T Consensus        22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~   99 (286)
T PRK13646         22 AIHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF   99 (286)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence            5556666666777  9999999999999999999977543221   000                0012233321     


Q ss_pred             --CH------------------HHHHHHHHHHhCCC-CCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh--
Q 046889          221 --SI------------------TKIQDEIAGWLGIK-ELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE--  271 (333)
Q Consensus       221 --~~------------------~~~~~~i~~~l~~~-~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--  271 (333)
                        ++                  ......+++.+++. ...     ..+ .+.....+.+.|..++-+++||++.+..|  
T Consensus       100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~  179 (286)
T PRK13646        100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ  179 (286)
T ss_pred             hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence              00                  11123445555653 111     112 34456678888989999999999987754  


Q ss_pred             ----hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 ----LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ----~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          +..+..... ..|..||++||+.+.+..++++.+.+
T Consensus       180 ~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l  219 (286)
T PRK13646        180 SKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVM  219 (286)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence                222222222 24789999999998876666665433

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.71  E-value=2.1e-08  Score=86.48  Aligned_cols=140  Identities=14%  Similarity=0.199  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC------CHH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP------SIT  223 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~------~~~  223 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++           ..+ ..+++.+      +..
T Consensus        14 ~il~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i-~~~~q~~~~~~~~t~~   90 (232)
T cd03300          14 VALDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPV-NTVFQNYALFPHLTVF   90 (232)
T ss_pred             eeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcce-EEEecccccCCCCcHH
Confidence            35556666666777  9999999999999999999987654221   10           011 1222221      111


Q ss_pred             ------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889          224 ------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD  273 (333)
Q Consensus       224 ------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~  273 (333)
                                        .....+++.+++.....     .+ .+...-.+.+.+..++-+++||++.+..|      +.
T Consensus        91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~  170 (232)
T cd03300          91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ  170 (232)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence                              11223445555542111     12 33445668888888999999999987644      22


Q ss_pred             hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          274 RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+...... .|+.||++||+......++++.+.+
T Consensus       171 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l  204 (232)
T cd03300         171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAVM  204 (232)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            22222222 3788999999999877666666443

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.70  E-value=1.5e-08  Score=88.57  Aligned_cols=140  Identities=10%  Similarity=0.186  Sum_probs=83.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------------------EEEEEe
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------------------VAMAVV  216 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------------------~~wv~v  216 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++.                         .....+
T Consensus        15 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v   92 (252)
T TIGR03005        15 VLDGLNFSVAAGE--KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV   92 (252)
T ss_pred             EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence            4455555566777  9999999999999999999976543210   000                         001122


Q ss_pred             CCCC------CHH-------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeC
Q 046889          217 SQTP------SIT-------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       217 ~~~~------~~~-------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                      ++.+      +..                   ....++++.+++...     ...+ .+.....+.+.+..++-+++||+
T Consensus        93 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  172 (252)
T TIGR03005        93 FQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE  172 (252)
T ss_pred             ecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            2221      110                   112344555555321     1122 33445668888888999999999


Q ss_pred             CCCchhhh------hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          266 LWVQIELD------RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       266 v~~~~~~~------~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.+..+..      .+...... .|..||++||+......++++.+.|
T Consensus       173 P~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l  220 (252)
T TIGR03005       173 VTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF  220 (252)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence            98765422      22222222 3778999999998876666665433

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PTZ00202 tuzin; Provisional

Probab=98.70  E-value=6.6e-07  Score=81.82  Aligned_cols=164  Identities=12%  Similarity=0.166  Sum_probs=99.9

Q ss_pred             ccccccccccccchHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHH
Q 046889          149 IISLSEGFYNFKSRESTMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKI  225 (333)
Q Consensus       149 ~~~~~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~  225 (333)
                      ....|.....|+||+.++..|...|.+   +...++.|+|++|+|||||++.+.....    +  ..++  ....+..++
T Consensus       254 ~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~--vNprg~eEl  325 (550)
T PTZ00202        254 LQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVF--VDVRGTEDT  325 (550)
T ss_pred             ccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEE--ECCCCHHHH
Confidence            335666778999999999999888853   2345999999999999999999986543    1  1222  222267999


Q ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHH-----c-cCceEEEEe--CCCCch-hh-hhccCCCCCCCcEEEEeeCChHH
Q 046889          226 QDEIAGWLGIKELPDNDELVRASLLCKRI-----E-KQRVLVILD--DLWVQI-EL-DRVGIPYGNDGCKFLLTSRSRAA  295 (333)
Q Consensus       226 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlD--dv~~~~-~~-~~l~~~~~~~g~~vivTTr~~~v  295 (333)
                      ++.++..||.+..  ....++...|.+.+     . +++.+||+-  +=.+.. .. +...+.+...-|.|++----+.+
T Consensus       326 Lr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evplesl  403 (550)
T PTZ00202        326 LRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESL  403 (550)
T ss_pred             HHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhc
Confidence            9999999998422  22233333333332     2 456667664  211111 11 11233444446666664433332


Q ss_pred             --Hhhcccce--EecCCCCHHHHHHHHHhhc
Q 046889          296 --CNQMQAHI--VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 --~~~~~~~~--~~l~~L~~~e~~~lf~~~a  322 (333)
                        ++..-..-  |.+.+++.+++..+-++..
T Consensus       404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~  434 (550)
T PTZ00202        404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI  434 (550)
T ss_pred             chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence              11111222  7889999999988776654

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.70  E-value=6.4e-08  Score=82.84  Aligned_cols=140  Identities=14%  Similarity=0.244  Sum_probs=81.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP-----  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~-----  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++                .....++++.+     
T Consensus        20 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   97 (221)
T TIGR02211        20 VLKGVSLSIGKGE--IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD   97 (221)
T ss_pred             eEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence            4455555566677  9999999999999999999876432110   00                01112222221     


Q ss_pred             -CHH------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          221 -SIT------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       221 -~~~------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                       +..                  .....+++.+++....     ..+ -+.....+...+..++-+++||++.+..|..  
T Consensus        98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~  177 (221)
T TIGR02211        98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA  177 (221)
T ss_pred             CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence             111                  1123445555553211     112 2344556788888889999999998775422  


Q ss_pred             ----hccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889          274 ----RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       274 ----~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                          .+..... ..|..||++||+......+ +..+.|+
T Consensus       178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~-d~v~~l~  215 (221)
T TIGR02211       178 KIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMK  215 (221)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc-CEEEEEe
Confidence                2222222 2367899999999887654 5555443

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.70  E-value=2.3e-08  Score=85.98  Aligned_cols=140  Identities=11%  Similarity=0.136  Sum_probs=82.2

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP-----  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~-----  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+++...+...   |+                ......+++.+     
T Consensus        25 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~  102 (228)
T PRK10584         25 ILTGVELVVKRGE--TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT  102 (228)
T ss_pred             EEeccEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence            4555665566777  9999999999999999999977543210   00                00112222221     


Q ss_pred             -CHH------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889          221 -SIT------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---  272 (333)
Q Consensus       221 -~~~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---  272 (333)
                       +..                  .-...+++.+++...     ...+ .+.....+...|..++-+++||++.+..|.   
T Consensus       103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~  182 (228)
T PRK10584        103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG  182 (228)
T ss_pred             cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence             111                  112334455554311     1112 234455678888888999999999877542   


Q ss_pred             ---hhccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889          273 ---DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       273 ---~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                         ..+..... ..|..||++||+...... +++.+.+.
T Consensus       183 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~  220 (228)
T PRK10584        183 DKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLV  220 (228)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEE
Confidence               22222222 237789999999988755 45555443

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.70  E-value=7.4e-08  Score=88.27  Aligned_cols=133  Identities=18%  Similarity=0.221  Sum_probs=80.8

Q ss_pred             HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC------CHH---
Q 046889          172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP------SIT---  223 (333)
Q Consensus       172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~------~~~---  223 (333)
                      .+..++  +++|+|++|+|||||++.+.+..++...   ++                ......+.+.+      +..   
T Consensus        19 ~i~~Ge--i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl   96 (354)
T TIGR02142        19 TLPGQG--VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNL   96 (354)
T ss_pred             EECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHH
Confidence            344566  9999999999999999999977543210   00                00011223322      111   


Q ss_pred             -------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCC
Q 046889          224 -------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIP  278 (333)
Q Consensus       224 -------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~  278 (333)
                                   .....+++.+++.....     .+ -+...-.+.+.|..++-+++||++.+..|..      .+...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~  176 (354)
T TIGR02142        97 RYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER  176 (354)
T ss_pred             HHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence                         11344556666542111     12 3445667888888999999999998775422      22222


Q ss_pred             CCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          279 YGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       279 ~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ... .|..||++||+.+.+..++++.+.|
T Consensus       177 l~~~~g~tiiivtH~~~~~~~~~d~i~~l  205 (354)
T TIGR02142       177 LHAEFGIPILYVSHSLQEVLRLADRVVVL  205 (354)
T ss_pred             HHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            222 3778999999999887777766444

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.70  E-value=6.4e-08  Score=88.45  Aligned_cols=139  Identities=17%  Similarity=0.235  Sum_probs=86.3

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCCC------H----
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTPS------I----  222 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~~------~----  222 (333)
                      ++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++.          +....+.|.+.      +    
T Consensus        20 l~~vs~~i~~Ge--~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi   97 (353)
T TIGR03265        20 LKDISLSVKKGE--FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI   97 (353)
T ss_pred             EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence            344444455667  9999999999999999999987654221   110          00112223221      0    


Q ss_pred             --------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhcc
Q 046889          223 --------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVG  276 (333)
Q Consensus       223 --------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~  276 (333)
                                    ......+++.+++......     + .+...-.|.+.|..++-+++||++.+..|.      ....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L  177 (353)
T TIGR03265        98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI  177 (353)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence                          1233456666766432222     2 344566788999999999999999876442      1221


Q ss_pred             CCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          277 IPY-GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       277 ~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ... ...|..+|++||+...+..++++.+.|
T Consensus       178 ~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl  208 (353)
T TIGR03265       178 RQLQRRLGVTTIMVTHDQEEALSMADRIVVM  208 (353)
T ss_pred             HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            112 233788999999999888777766433

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=7.2e-08  Score=85.34  Aligned_cols=140  Identities=13%  Similarity=0.237  Sum_probs=84.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCC-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTP-------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~-------  220 (333)
                      .++.+...+..|+  +++|+|+||+|||||++.+.+...+...   ++.              ....++++.+       
T Consensus        17 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~   94 (275)
T PRK13639         17 ALKGINFKAEKGE--MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP   94 (275)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence            4455555566777  9999999999999999999876543211   000              0112333332       


Q ss_pred             CHH------------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889          221 SIT------------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE-----  271 (333)
Q Consensus       221 ~~~------------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----  271 (333)
                      +..                  .....+++.+++......     + .+.....+...+..++-+++||++.+..|     
T Consensus        95 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~  174 (275)
T PRK13639         95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS  174 (275)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence            110                  112344555555322211     1 23445668888888999999999987644     


Q ss_pred             -hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 -LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 -~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                       +..+.......|..||++||+.+.+..++++.+.|
T Consensus       175 ~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l  210 (275)
T PRK13639        175 QIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVM  210 (275)
T ss_pred             HHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence             22222222334778999999999877666665333

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=7.5e-08  Score=85.86  Aligned_cols=140  Identities=17%  Similarity=0.265  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCCC----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTPS----  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~~----  221 (333)
                      .++.+...+..|+  +++|+|++|+|||||++.+.+...+...   |+.                ....++++.+.    
T Consensus        22 ~L~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~   99 (290)
T PRK13634         22 ALYDVNVSIPSGS--YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF   99 (290)
T ss_pred             ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence            4555555566777  9999999999999999999976543211   000                01123333320    


Q ss_pred             ---H------------------HHHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889          222 ---I------------------TKIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD  273 (333)
Q Consensus       222 ---~------------------~~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~  273 (333)
                         +                  ......+++.+++. ....     .+ .+.....|.+.|..++-+++||++.+..|..
T Consensus       100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~  179 (290)
T PRK13634        100 EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK  179 (290)
T ss_pred             hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence               0                  01223445556653 1111     12 3445667888899999999999998775422


Q ss_pred             ------hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                            .+..... ..|..||++||+.+.+..++++.+.|
T Consensus       180 ~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l  219 (290)
T PRK13634        180 GRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM  219 (290)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence                  2222222 23778999999999877766666433

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.69  E-value=5.4e-08  Score=83.67  Aligned_cols=140  Identities=14%  Similarity=0.214  Sum_probs=83.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH-----HhhcC---CCe--------------EEEEEeCCCC--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA-----KEKKM---FDE--------------VAMAVVSQTP--  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~-----~~~~~---f~~--------------~~wv~v~~~~--  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+..     .+...   ++.              ....++++.+  
T Consensus        15 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   92 (227)
T cd03260          15 ALKDISLDIPKGE--ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP   92 (227)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence            4455555556677  99999999999999999999876     32110   000              0011222321  


Q ss_pred             ---CH-------------------HHHHHHHHHHhCCCCC-------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889          221 ---SI-------------------TKIQDEIAGWLGIKEL-------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQI  270 (333)
Q Consensus       221 ---~~-------------------~~~~~~i~~~l~~~~~-------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~  270 (333)
                         +.                   ......+++.+++...       ...+ .+.....+...+..++-+++||++.+..
T Consensus        93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L  172 (227)
T cd03260          93 FPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL  172 (227)
T ss_pred             ccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence               11                   1112344555555311       1222 2345566888888899999999998764


Q ss_pred             hh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          271 EL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       271 ~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      |.      ..+....... ..||++||+.+.+..++++.+.+.
T Consensus       173 D~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~  214 (227)
T cd03260         173 DPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLL  214 (227)
T ss_pred             CHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEe
Confidence            42      2222222233 679999999998777777665443

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=1.3e-08  Score=89.02  Aligned_cols=140  Identities=16%  Similarity=0.261  Sum_probs=81.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC------CH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------SI-  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------~~-  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   +..            ....++++..      +. 
T Consensus        17 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   94 (255)
T PRK11231         17 ILNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR   94 (255)
T ss_pred             EEeeeeeEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHH
Confidence            4555555566777  9999999999999999999876432110   000            0011222221      11 


Q ss_pred             ---------------------HHHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          223 ---------------------TKIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       223 ---------------------~~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                                           ......+++.+++..     ....+ .+...-.+.+.+..++-+++||++.+..|..  
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~  174 (255)
T PRK11231         95 ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ  174 (255)
T ss_pred             HHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence                                 011223344444421     11122 2344556888888899999999998765422  


Q ss_pred             ----hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          .+.......|..||++||+......+++..+.+
T Consensus       175 ~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l  211 (255)
T PRK11231        175 VELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL  211 (255)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence                222222234778999999999877766665433

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.69  E-value=1.6e-08  Score=85.10  Aligned_cols=133  Identities=20%  Similarity=0.187  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--------C--------CeEEEEEeCCC------CCH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--------F--------DEVAMAVVSQT------PSI  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--------f--------~~~~wv~v~~~------~~~  222 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...        .        ....|  +++.      .+.
T Consensus        16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~--~~q~~~~~~~~tv   91 (200)
T PRK13540         16 LLQQISFHLPAGG--LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF--VGHRSGINPYLTL   91 (200)
T ss_pred             EEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE--eccccccCcCCCH
Confidence            4555555566777  9999999999999999999877543211        0        01112  1211      111


Q ss_pred             HH-------------HHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccC
Q 046889          223 TK-------------IQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGI  277 (333)
Q Consensus       223 ~~-------------~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~  277 (333)
                      .+             ....+++.+++....     ..+ .+...-.+.+.+..++-+++||++.+..|..      .+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~  171 (200)
T PRK13540         92 RENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ  171 (200)
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHH
Confidence            11             123445555543211     112 3344566888888899999999998765422      2222


Q ss_pred             CCCCCCcEEEEeeCChHHHhhccc
Q 046889          278 PYGNDGCKFLLTSRSRAACNQMQA  301 (333)
Q Consensus       278 ~~~~~g~~vivTTr~~~v~~~~~~  301 (333)
                      .....|..||++||+......+..
T Consensus       172 ~~~~~~~tiii~sh~~~~~~~~d~  195 (200)
T PRK13540        172 EHRAKGGAVLLTSHQDLPLNKADY  195 (200)
T ss_pred             HHHHcCCEEEEEeCCchhccccch
Confidence            222347789999999888765433

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=1.4e-08  Score=87.90  Aligned_cols=141  Identities=12%  Similarity=0.171  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC-----eEEEEEeCCCC------C
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD-----EVAMAVVSQTP------S  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~-----~~~wv~v~~~~------~  221 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...+...           ..     .....++++..      +
T Consensus        19 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   96 (237)
T PRK11614         19 QALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT   96 (237)
T ss_pred             eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence            35556666666777  9999999999999999999876432110           00     00112223221      1


Q ss_pred             HHH----------------HHHHHHHHhC-CC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------
Q 046889          222 ITK----------------IQDEIAGWLG-IK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------  272 (333)
Q Consensus       222 ~~~----------------~~~~i~~~l~-~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------  272 (333)
                      +.+                ....+++.++ +.     .....+ .+.....+.+.+..++-+++||++.+..|.      
T Consensus        97 v~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l  176 (237)
T PRK11614         97 VEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI  176 (237)
T ss_pred             HHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHH
Confidence            110                1112222221 11     111112 233445677777788899999999876442      


Q ss_pred             hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..+.......|..||++||+.+.+..++++.+.+
T Consensus       177 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  210 (237)
T PRK11614        177 FDTIEQLREQGMTIFLVEQNANQALKLADRGYVL  210 (237)
T ss_pred             HHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEE
Confidence            2222222334778999999998776666666433

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=8e-08  Score=82.94  Aligned_cols=139  Identities=13%  Similarity=0.232  Sum_probs=82.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP-----  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~-----  220 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |+                .....++++.+     
T Consensus        24 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~  101 (233)
T PRK11629         24 VLHNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD  101 (233)
T ss_pred             eEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence            4555555566677  9999999999999999999976542110   00                01112233321     


Q ss_pred             -CHH------------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          221 -SIT------------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       221 -~~~------------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                       +..                  .....+++.+++......     + -+.....+...+..++-+++||++.+..|..  
T Consensus       102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~  181 (233)
T PRK11629        102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA  181 (233)
T ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence             111                  112345556665422111     1 2334556788888899999999998775422  


Q ss_pred             ----hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ----RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ----~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          .+..... ..|..||++||+.+.+..++ +.+.+
T Consensus       182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~-~~~~l  218 (233)
T PRK11629        182 DSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS-RQLEM  218 (233)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhC-EEEEE
Confidence                2222222 24778999999999877653 44433

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.69  E-value=1.8e-07  Score=75.14  Aligned_cols=127  Identities=15%  Similarity=0.246  Sum_probs=82.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE----------------------------eCCC------C
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV----------------------------VSQT------P  220 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~----------------------------v~~~------~  220 (333)
                      .++  +++|+||+|+|||||...|.+...+.+   ..+|+.                            |.++      +
T Consensus        24 ~ge--~vAi~GpSGaGKSTLLnLIAGF~~P~~---G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P   98 (231)
T COG3840          24 AGE--IVAILGPSGAGKSTLLNLIAGFETPAS---GEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP   98 (231)
T ss_pred             CCc--EEEEECCCCccHHHHHHHHHhccCCCC---ceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence            455  899999999999999999998765432   233432                            1110      0


Q ss_pred             ----C--HHHHHHHHHHHhCCCCCC------CCCHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccC-CCCC
Q 046889          221 ----S--ITKIQDEIAGWLGIKELP------DNDELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGI-PYGN  281 (333)
Q Consensus       221 ----~--~~~~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~-~~~~  281 (333)
                          +  ...-...++.+.|+.+..      -...+.....+.+.|-..+-+++||++.+..+      ...+.. -+..
T Consensus        99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E  178 (231)
T COG3840          99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE  178 (231)
T ss_pred             ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence                0  123456677777765221      12234556678888888888899999987643      222211 2234


Q ss_pred             CCcEEEEeeCChHHHhhcccceEec
Q 046889          282 DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+-.++++||..+-+..+....+.+
T Consensus       179 ~~~TllmVTH~~~Da~~ia~~~~fl  203 (231)
T COG3840         179 RKMTLLMVTHHPEDAARIADRVVFL  203 (231)
T ss_pred             hCCEEEEEeCCHHHHHHhhhceEEE
Confidence            4778999999999888777666433

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.68  E-value=1.5e-08  Score=97.42  Aligned_cols=144  Identities=18%  Similarity=0.278  Sum_probs=88.7

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh---hcC--CCe-------------EEEEEeCCCC--
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE---KKM--FDE-------------VAMAVVSQTP--  220 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~~--f~~-------------~~wv~v~~~~--  220 (333)
                      |....++.+...+..++  +++|+|+||+|||||++.+.+...+   .+.  |+.             ....++++.+  
T Consensus        16 ~~~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~   93 (506)
T PRK13549         16 GGVKALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELAL   93 (506)
T ss_pred             CCeEeecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEecccc
Confidence            43446677777777777  9999999999999999999887542   110  100             0011122211  


Q ss_pred             ----CH---------------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889          221 ----SI---------------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQ  269 (333)
Q Consensus       221 ----~~---------------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~  269 (333)
                          +.                     ......+++.+++......     + .+.....+.+.|..++-+++||++.+.
T Consensus        94 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~  173 (506)
T PRK13549         94 VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTAS  173 (506)
T ss_pred             CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence                00                     1123455666666422222     2 244566788888899999999999877


Q ss_pred             hh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          270 IE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       270 ~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .|      +..+.......|..||++||+...+..++++.+.+
T Consensus       174 LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l  216 (506)
T PRK13549        174 LTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVI  216 (506)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEE
Confidence            54      22222222234778999999999887776666433

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.68  E-value=2.5e-08  Score=87.32  Aligned_cols=141  Identities=13%  Similarity=0.183  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC------H
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS------I  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~------~  222 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+..++...   ++.            ....++++.+.      .
T Consensus        15 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (256)
T TIGR03873        15 LIVDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV   92 (256)
T ss_pred             EEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence            35556666666777  9999999999999999999876543211   000            00112222211      1


Q ss_pred             H----------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889          223 T----------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---  271 (333)
Q Consensus       223 ~----------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---  271 (333)
                      .                      .....+++.+++...     ...+ .+.....+.+.+..++-+++||++.+..|   
T Consensus        93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  172 (256)
T TIGR03873        93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA  172 (256)
T ss_pred             HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence            0                      012233444444211     1112 33445567888888999999999987644   


Q ss_pred             ---hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 ---LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ---~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         +..+.......|..||++||+......++++.+.|
T Consensus       173 ~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  210 (256)
T TIGR03873       173 QLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVL  210 (256)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence               22222222334778999999999887777766444

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.68  E-value=4e-08  Score=95.14  Aligned_cols=142  Identities=14%  Similarity=0.235  Sum_probs=88.9

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCC--------CHH----
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTP--------SIT----  223 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~--------~~~----  223 (333)
                      ++....++.+...+..++  +++|+|+||+|||||++.+++...+...   |.. ....++++.+        +..    
T Consensus       329 ~~~~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~  406 (530)
T PRK15064        329 FDNGPLFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMS  406 (530)
T ss_pred             eCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHH
Confidence            444456677777777777  9999999999999999999977543211   111 1112233321        111    


Q ss_pred             ---------HHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCCC
Q 046889          224 ---------KIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYGN  281 (333)
Q Consensus       224 ---------~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~~  281 (333)
                               .....+++.+++. ..     ...+ .+.....+...+..++-+++||++.+..|...      +....  
T Consensus       407 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--  484 (530)
T PRK15064        407 QWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--  484 (530)
T ss_pred             HhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--
Confidence                     1223455566552 11     1112 34456678888889999999999987755322      21222  


Q ss_pred             CCcEEEEeeCChHHHhhcccceEec
Q 046889          282 DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                       +..||++||+.+.+..++++.+.+
T Consensus       485 -~~tvi~vsHd~~~~~~~~d~i~~l  508 (530)
T PRK15064        485 -EGTLIFVSHDREFVSSLATRIIEI  508 (530)
T ss_pred             -CCEEEEEeCCHHHHHHhCCEEEEE
Confidence             347999999999988887777544

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.68  E-value=6.9e-09  Score=91.36  Aligned_cols=140  Identities=14%  Similarity=0.235  Sum_probs=84.5

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC------CH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------SI  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------~~  222 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.            ....++++.+      +.
T Consensus        25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  102 (265)
T PRK10575         25 TLLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTV  102 (265)
T ss_pred             EEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccH
Confidence            45667777777777  9999999999999999999876432110   000            0011222221      11


Q ss_pred             ----------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889          223 ----------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-  273 (333)
Q Consensus       223 ----------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-  273 (333)
                                            ......+++.+++...     ...+ .+.....+...+..++-+++||++.+..|.. 
T Consensus       103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~  182 (265)
T PRK10575        103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH  182 (265)
T ss_pred             HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence                                  1112344555554311     1122 3445566888888999999999998775432 


Q ss_pred             -----hccCCCC-CCCcEEEEeeCChHHHhhcccceEe
Q 046889          274 -----RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVD  305 (333)
Q Consensus       274 -----~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~  305 (333)
                           .+..... ..|..||++||+......++++.+.
T Consensus       183 ~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~  220 (265)
T PRK10575        183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVA  220 (265)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence                 2222222 2377899999999987766666533

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.68  E-value=1.5e-08  Score=93.03  Aligned_cols=140  Identities=14%  Similarity=0.227  Sum_probs=86.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCCC------H---
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTPS------I---  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~~------~---  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   |+.          +....+.|.+.      +   
T Consensus        29 ~l~~vsl~i~~Ge--~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN  106 (375)
T PRK09452         29 VISNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFEN  106 (375)
T ss_pred             EEeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHH
Confidence            4555555566677  9999999999999999999987654211   110          00112223221      0   


Q ss_pred             ---------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhc
Q 046889          223 ---------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRV  275 (333)
Q Consensus       223 ---------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l  275 (333)
                                     ......+++.+++......     + .+..+..|.+.|..++-+++||++.+..|.      ...
T Consensus       107 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~  186 (375)
T PRK09452        107 VAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE  186 (375)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence                           1123345555665422221     2 344566788889999999999999876442      222


Q ss_pred             cCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          276 GIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       276 ~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .... ...|..+|++||+...+..++++.+.|
T Consensus       187 L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl  218 (375)
T PRK09452        187 LKALQRKLGITFVFVTHDQEEALTMSDRIVVM  218 (375)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            1222 233788999999999888777776433

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.68  E-value=5.6e-08  Score=84.62  Aligned_cols=139  Identities=13%  Similarity=0.218  Sum_probs=83.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh----hcC--CC------------eEEEEEeCCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE----KKM--FD------------EVAMAVVSQTPS-----  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~~~--f~------------~~~wv~v~~~~~-----  221 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+    .+.  ++            .....++++.+.     
T Consensus        17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~t   94 (246)
T PRK14269         17 ALFDINMQIEQNK--ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKS   94 (246)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccccc
Confidence            4555555556677  9999999999999999999976421    110  00            000122233221     


Q ss_pred             H--------------------HHHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889          222 I--------------------TKIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE  271 (333)
Q Consensus       222 ~--------------------~~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~  271 (333)
                      .                    ..-...+++.+++..         ....+ .+.....+.+.+..++-+++||++.+..|
T Consensus        95 v~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD  174 (246)
T PRK14269         95 IYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD  174 (246)
T ss_pred             HHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence            0                    011234556655521         11122 34456678888889999999999987644


Q ss_pred             h------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 L------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .      ..+..... .|..||++||+......++++.+.+
T Consensus       175 ~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l  214 (246)
T PRK14269        175 PISSGVIEELLKELS-HNLSMIMVTHNMQQGKRVADYTAFF  214 (246)
T ss_pred             HHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhCcEEEEE
Confidence            2      22222222 2678999999999877777766444

>PRK13409 putative ATPase RIL; Provisional

Probab=98.68  E-value=1.2e-07  Score=92.38  Aligned_cols=138  Identities=15%  Similarity=0.208  Sum_probs=85.7

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCC------CHH-------------
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTP------SIT-------------  223 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~------~~~-------------  223 (333)
                      ++.+...+..++  +++|+|+||+|||||++.+.+..++...   ++ ....+++|..      ++.             
T Consensus       355 l~~~s~~i~~Ge--iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~  431 (590)
T PRK13409        355 LEVEGGEIYEGE--VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSS  431 (590)
T ss_pred             EEecceEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChH
Confidence            334444445666  9999999999999999999987653321   11 0112233332      111             


Q ss_pred             HHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCC-CCCcEEEEee
Q 046889          224 KIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYG-NDGCKFLLTS  290 (333)
Q Consensus       224 ~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~-~~g~~vivTT  290 (333)
                      .....+++.+++..     ....+ -+.....+...|..++-+++||++.+..|...      +...+. ..|..||++|
T Consensus       432 ~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivs  511 (590)
T PRK13409        432 YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVD  511 (590)
T ss_pred             HHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            12234555665531     11222 34456678888999999999999987755332      222222 2377899999


Q ss_pred             CChHHHhhcccceEec
Q 046889          291 RSRAACNQMQAHIVDV  306 (333)
Q Consensus       291 r~~~v~~~~~~~~~~l  306 (333)
                      |+...+..++++.+.+
T Consensus       512 HD~~~~~~~aDrvivl  527 (590)
T PRK13409        512 HDIYMIDYISDRLMVF  527 (590)
T ss_pred             CCHHHHHHhCCEEEEE
Confidence            9999988877766444

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.68  E-value=5.9e-08  Score=83.58  Aligned_cols=132  Identities=13%  Similarity=0.211  Sum_probs=78.9

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh-----hcC--CC----------eEEEEEeCCCC--------CHH----
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE-----KKM--FD----------EVAMAVVSQTP--------SIT----  223 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-----~~~--f~----------~~~wv~v~~~~--------~~~----  223 (333)
                      +..++  +++|+|++|+|||||++.+.+...+     .+.  ++          .....++++.+        +..    
T Consensus         9 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~   86 (230)
T TIGR02770         9 LKRGE--VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAI   86 (230)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHH
Confidence            44566  9999999999999999999987653     110  00          00112233322        110    


Q ss_pred             --------------HHHHHHHHHhCCCC---C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------
Q 046889          224 --------------KIQDEIAGWLGIKE---L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------  274 (333)
Q Consensus       224 --------------~~~~~i~~~l~~~~---~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------  274 (333)
                                    .....+++.+++..   .     ...+ .+...-.+.+.+..++-+++||++.+..|...      
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~  166 (230)
T TIGR02770        87 ETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLK  166 (230)
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence                          01223445555531   0     1111 24445668888888899999999987755322      


Q ss_pred             ccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          275 VGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       275 l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +...... .|..||++||+.+....++++.+.|
T Consensus       167 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  199 (230)
T TIGR02770       167 LLRELRQLFGTGILLITHDLGVVARIADEVAVM  199 (230)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            2122222 3778999999999877766666444

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.68  E-value=7.4e-08  Score=83.93  Aligned_cols=140  Identities=13%  Similarity=0.211  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------cC--CCe--------------EEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------KM--FDE--------------VAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~~--f~~--------------~~wv~v~~~~~  221 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+.      +.  |+.              ....++++.+.
T Consensus        15 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~   92 (247)
T TIGR00972        15 EALKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN   92 (247)
T ss_pred             eeecceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence            34566666666777  99999999999999999998775432      10  000              00112222211


Q ss_pred             -----HH-------------------HHHHHHHHHhCCC----CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 -----IT-------------------KIQDEIAGWLGIK----EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 -----~~-------------------~~~~~i~~~l~~~----~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                           ..                   .....+++.+++.    ..     ...+ .+.....+.+.+..++-+++||++.
T Consensus        93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt  172 (247)
T TIGR00972        93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT  172 (247)
T ss_pred             cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                 10                   1122334444542    10     1112 2344556888888899999999998


Q ss_pred             Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|.      ..+...... +..||++||+...+..++++.+.|
T Consensus       173 ~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l  216 (247)
T TIGR00972       173 SALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFF  216 (247)
T ss_pred             ccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEE
Confidence            76442      222222222 367999999999877776666443

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=8.5e-08  Score=83.69  Aligned_cols=140  Identities=11%  Similarity=0.148  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CCe------------EEEEEeCCCCC--
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FDE------------VAMAVVSQTPS--  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~~------------~~wv~v~~~~~--  221 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...+      .+.  |+.            ....++++.+.  
T Consensus        17 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~   94 (250)
T PRK14247         17 EVLDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI   94 (250)
T ss_pred             eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence            35566666677777  9999999999999999999987542      110  100            01122233221  


Q ss_pred             ----HH--------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 ----IT--------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 ----~~--------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                          ..                    .....+++.+++..         ....+ .+.....+.+.+..++-+++||++.
T Consensus        95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~  174 (250)
T PRK14247         95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT  174 (250)
T ss_pred             CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                11                    01123344444321         01112 2344566788888899999999998


Q ss_pred             Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|.      ..+...... |..||++||+......++++.+.+
T Consensus       175 ~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l  218 (250)
T PRK14247        175 ANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFL  218 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEE
Confidence            76442      222222222 678999999999877666666444

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.67  E-value=3e-08  Score=87.40  Aligned_cols=140  Identities=15%  Similarity=0.249  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCC--------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPS--------  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~--------  221 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+...+...   ++            .....++++.+.        
T Consensus        28 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t  105 (267)
T PRK15112         28 AVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR  105 (267)
T ss_pred             eeeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence            5666666677777  9999999999999999999977643211   00            001122233210        


Q ss_pred             H-------------------HHHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh-
Q 046889          222 I-------------------TKIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR-  274 (333)
Q Consensus       222 ~-------------------~~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~-  274 (333)
                      .                   ......+++.+++. ..     ...+ .+.....+...+..++-+++||++.+..|... 
T Consensus       106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~  185 (267)
T PRK15112        106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR  185 (267)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence            0                   01123445566652 11     1122 23445568888888999999999987754322 


Q ss_pred             -----ccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          275 -----VGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       275 -----l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                           +...... .|..||++||+.+....++++.+.+
T Consensus       186 ~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l  223 (267)
T PRK15112        186 SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVM  223 (267)
T ss_pred             HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence                 2222222 3778999999999887776666433

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=9.1e-08  Score=88.54  Aligned_cols=136  Identities=13%  Similarity=0.227  Sum_probs=82.7

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------------eEEEEEeCCCC------CHH
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------------EVAMAVVSQTP------SIT  223 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------------~~~wv~v~~~~------~~~  223 (333)
                      +...+..++  +++|+|++|+|||||++.+.+...+...   |+                .....++.+.+      +..
T Consensus        47 isl~i~~Ge--i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~  124 (400)
T PRK10070         47 ASLAIEEGE--IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVL  124 (400)
T ss_pred             EEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHH
Confidence            333344566  9999999999999999999977543211   00                00122233322      111


Q ss_pred             ------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889          224 ------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD  273 (333)
Q Consensus       224 ------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~  273 (333)
                                        ....++++.+++....     ..+ -+...-.|.+.|..++-+++||++.+..|      +.
T Consensus       125 enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~  204 (400)
T PRK10070        125 DNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ  204 (400)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence                              1123455666664221     122 34456678888999999999999987644      22


Q ss_pred             hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+..... ..|..||++||+.+.+..++++.+.|
T Consensus       205 ~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL  238 (400)
T PRK10070        205 DELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIM  238 (400)
T ss_pred             HHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEE
Confidence            2222222 24778999999999887777766443

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=9e-08  Score=85.23  Aligned_cols=138  Identities=17%  Similarity=0.285  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--------------eEEEEEeCCCC-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--------------EVAMAVVSQTP-------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--------------~~~wv~v~~~~-------  220 (333)
                      .++.+...+..|+  +++|+|+||+|||||++.+.+...+...   ++              .....++++.+       
T Consensus        22 ~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~   99 (287)
T PRK13637         22 ALDNVNIEIEDGE--FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE   99 (287)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence            4555666666777  9999999999999999999976543210   00              00112233321       


Q ss_pred             CH------------------HHHHHHHHHHhCCC--CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889          221 SI------------------TKIQDEIAGWLGIK--ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---  271 (333)
Q Consensus       221 ~~------------------~~~~~~i~~~l~~~--~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---  271 (333)
                      +.                  ......+++.+++.  ....     .+ .+.....|.+.|..++-+++||++.+..|   
T Consensus       100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~  179 (287)
T PRK13637        100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG  179 (287)
T ss_pred             cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence            11                  01234556666663  1111     12 34456678899999999999999987744   


Q ss_pred             ---hhhccCCCCC-CCcEEEEeeCChHHHhhcccceE
Q 046889          272 ---LDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       272 ---~~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                         +..+...... .|..||++||+...+..++++.+
T Consensus       180 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~  216 (287)
T PRK13637        180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII  216 (287)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence               2222222222 37789999999988776666663

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.67  E-value=8.7e-08  Score=79.38  Aligned_cols=48  Identities=21%  Similarity=0.433  Sum_probs=34.3

Q ss_pred             cccchHHHHHHHHHHhh---cCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          158 NFKSRESTMKDIMEAMK---DEKVSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      .|+||+++++.+...+.   .+..+.+.|+|+.|+|||+|++.++......
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            48999999999999982   3456799999999999999999999888765

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.67  E-value=4.2e-08  Score=94.81  Aligned_cols=63  Identities=13%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          244 LVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.....+...|..++-+|+||++.+..|...      +.... ...|..||++||+...+..++++.+.|
T Consensus       173 q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l  242 (520)
T TIGR03269       173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWL  242 (520)
T ss_pred             HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence            4456678888889999999999987754222      21222 223778999999999988777776554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.67  E-value=6.7e-08  Score=76.87  Aligned_cols=149  Identities=15%  Similarity=0.173  Sum_probs=95.0

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------------------CC-CeE
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------------------MF-DEV  211 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------------------~f-~~~  211 (333)
                      ..++||...-..++.+.|.+++  |.+|+|.+|+|||||...+..+..++.                       +| -..
T Consensus        12 lsk~Yg~~~gc~~vsF~l~PGe--VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RT   89 (258)
T COG4107          12 LSKLYGPGKGCRDVSFDLYPGE--VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRT   89 (258)
T ss_pred             hhhhhCCCcCccccceeecCCc--EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhh
Confidence            4567777777777888888888  999999999999999999987654321                       11 112


Q ss_pred             EEEEeCCCC---------------------------CHHHHHHHHHHHhCCCCC----CC---CCHHHHHHHHHHHHccC
Q 046889          212 AMAVVSQTP---------------------------SITKIQDEIAGWLGIKEL----PD---NDELVRASLLCKRIEKQ  257 (333)
Q Consensus       212 ~wv~v~~~~---------------------------~~~~~~~~i~~~l~~~~~----~~---~~~~~~~~~l~~~l~~k  257 (333)
                      -|-.+.|++                           ++.......++...++..    .+   ....+..-.|.+.|-..
T Consensus        90 eWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~  169 (258)
T COG4107          90 EWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTR  169 (258)
T ss_pred             ccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccC
Confidence            365555544                           122233344555544311    11   11344566788888899


Q ss_pred             ceEEEEeCCCCchh------hhhccC-CCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          258 RVLVILDDLWVQIE------LDRVGI-PYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       258 ~~LlVlDdv~~~~~------~~~l~~-~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +-|+++|++.-..+      +.++.. ...+-|-.++|+||+..++...+.....|
T Consensus       170 PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvm  225 (258)
T COG4107         170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVM  225 (258)
T ss_pred             CceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceee
Confidence            99999999875533      112211 11233678999999999988776654333

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.67  E-value=1.6e-07  Score=82.46  Aligned_cols=137  Identities=15%  Similarity=0.163  Sum_probs=79.1

Q ss_pred             HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeC----CCCCH---------------HH
Q 046889          168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVS----QTPSI---------------TK  224 (333)
Q Consensus       168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~----~~~~~---------------~~  224 (333)
                      .+...+.+|+  +++|+|++|+|||||++.+.+...+...   ++. ..++...    ...+.               ..
T Consensus        42 ~is~~i~~Ge--~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~  119 (264)
T PRK13546         42 DISLKAYEGD--VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKE  119 (264)
T ss_pred             eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence            3344455677  9999999999999999999987643221   111 1111100    00111               11


Q ss_pred             ---HHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEe
Q 046889          225 ---IQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLT  289 (333)
Q Consensus       225 ---~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivT  289 (333)
                         ....++..+++...     ...+ .+...-.+...+..++-+++||++.+..|..      .+.......|..||++
T Consensus       120 ~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIii  199 (264)
T PRK13546        120 IKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFV  199 (264)
T ss_pred             HHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence               11223334343211     1122 2334556788888899999999998775532      2222223347789999


Q ss_pred             eCChHHHhhcccceEec
Q 046889          290 SRSRAACNQMQAHIVDV  306 (333)
Q Consensus       290 Tr~~~v~~~~~~~~~~l  306 (333)
                      ||+...+..++++.+.+
T Consensus       200 sH~~~~i~~~~d~i~~l  216 (264)
T PRK13546        200 SHNLGQVRQFCTKIAWI  216 (264)
T ss_pred             cCCHHHHHHHcCEEEEE
Confidence            99999877766665433

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=1.3e-07  Score=83.78  Aligned_cols=138  Identities=16%  Similarity=0.187  Sum_probs=83.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------CH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------SI  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------~~  222 (333)
                      .++.+...+..|+  +++|+|+||+|||||++.+.+...+...   |+.            ....++++.+       +.
T Consensus        19 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv   96 (277)
T PRK13652         19 ALNNINFIAPRNS--RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTV   96 (277)
T ss_pred             eeeEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccH
Confidence            4555555566777  9999999999999999999977543211   100            0012233321       11


Q ss_pred             H------------------HHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h
Q 046889          223 T------------------KIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L  272 (333)
Q Consensus       223 ~------------------~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~  272 (333)
                      .                  .....+++.+++..     ....+ .+.....+...|..++-+++||++.+..|      +
T Consensus        97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l  176 (277)
T PRK13652         97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL  176 (277)
T ss_pred             HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            0                  11233444445431     11122 34456678888889999999999987654      2


Q ss_pred             hhccCCCCC-CCcEEEEeeCChHHHhhcccceE
Q 046889          273 DRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       273 ~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      ..+...... .|..||++||+.+.+..++++.+
T Consensus       177 ~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~  209 (277)
T PRK13652        177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIY  209 (277)
T ss_pred             HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence            222222222 37789999999988766666653

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.66  E-value=1.2e-07  Score=80.56  Aligned_cols=139  Identities=12%  Similarity=0.216  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC------CHH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP------SIT-  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~------~~~-  223 (333)
                      .++.+...+.+ +  +++|+|++|+|||||++.+.+...+...   +.           ......+++.+      +.. 
T Consensus        15 ~l~~vs~~i~~-g--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   91 (211)
T cd03264          15 ALDGVSLTLGP-G--MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE   91 (211)
T ss_pred             EEcceeEEEcC-C--cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHH
Confidence            34444444444 3  8999999999999999999976532110   00           00012223321      111 


Q ss_pred             -----------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------h
Q 046889          224 -----------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------R  274 (333)
Q Consensus       224 -----------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~  274 (333)
                                       .....+++.+++.....     .+ .+.....+.+.+..++-+++||++.+..|..      .
T Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~  171 (211)
T cd03264          92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRN  171 (211)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                             11223445555431111     11 2344566888888999999999998765422      2


Q ss_pred             ccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      +...... +..||++||+.+....++++.+.++
T Consensus       172 ~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~  203 (211)
T cd03264         172 LLSELGE-DRIVILSTHIVEDVESLCNQVAVLN  203 (211)
T ss_pred             HHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEE
Confidence            2222222 4679999999998877777665443

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=1.5e-07  Score=81.19  Aligned_cols=136  Identities=15%  Similarity=0.213  Sum_probs=79.0

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CHH------
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SIT------  223 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~~------  223 (333)
                      +...+..++  +++|+|++|+|||||++.+.+...+...   |+          .....++++.+      +..      
T Consensus        18 is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~   95 (232)
T PRK10771         18 FDLTVERGE--RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG   95 (232)
T ss_pred             eEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence            444445667  9999999999999999999876543211   00          00011222221      110      


Q ss_pred             ------------HHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC
Q 046889          224 ------------KIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY  279 (333)
Q Consensus       224 ------------~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~  279 (333)
                                  .-...+++.+++..     ....+ .+.....+.+.+..++-+++||++.+..|..      .+....
T Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~  175 (232)
T PRK10771         96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQV  175 (232)
T ss_pred             cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                        11223444444421     11112 2344556777888889999999998765422      222222


Q ss_pred             C-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          280 G-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       280 ~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      . ..|..||++||+.+.+..++++.+.+
T Consensus       176 ~~~~~~tiii~sH~~~~~~~~~d~i~~l  203 (232)
T PRK10771        176 CQERQLTLLMVSHSLEDAARIAPRSLVV  203 (232)
T ss_pred             HHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            2 23778999999999877776666444

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=2e-06  Score=78.64  Aligned_cols=167  Identities=20%  Similarity=0.220  Sum_probs=117.2

Q ss_pred             ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGW  232 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~  232 (333)
                      ..+.+|+.+++.+...|.+    +.+.-+.|.|+.|+|||+.++.+.........-...+++.+....++..++..|++.
T Consensus        17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~   96 (366)
T COG1474          17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK   96 (366)
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence            3478999999999887753    333448899999999999999999988754332236788888888999999999999


Q ss_pred             hCCCCCCCCCHHHHHHHHHHHHcc--CceEEEEeCCCCchh-----hhhccCCCCCCCc--EEEEeeCChHHHhhc----
Q 046889          233 LGIKELPDNDELVRASLLCKRIEK--QRVLVILDDLWVQIE-----LDRVGIPYGNDGC--KFLLTSRSRAACNQM----  299 (333)
Q Consensus       233 l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~-----~~~l~~~~~~~g~--~vivTTr~~~v~~~~----  299 (333)
                      ++..+....+..+....+.+.+..  +..++|||++.....     +-.+........+  -+|.++.+..+...+    
T Consensus        97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv  176 (366)
T COG1474          97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV  176 (366)
T ss_pred             cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence            975444556666777777777765  778999999875422     2222111111133  456667666553333    


Q ss_pred             ----ccceEecCCCCHHHHHHHHHhhcc
Q 046889          300 ----QAHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       300 ----~~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                          +...+..+|-+.+|-...+..++-
T Consensus       177 ~s~l~~~~I~F~pY~a~el~~Il~~R~~  204 (366)
T COG1474         177 KSSLGPSEIVFPPYTAEELYDILRERVE  204 (366)
T ss_pred             hhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence                233377888888888888888764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.65  E-value=1.4e-08  Score=97.89  Aligned_cols=142  Identities=14%  Similarity=0.159  Sum_probs=87.5

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC--
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP--  220 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~--  220 (333)
                      +....++++...+..++  +++|+|+||+|||||++.+.+...+...   ++               .+.+  +.+.+  
T Consensus        16 ~~~~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~--v~q~~~~   91 (510)
T PRK09700         16 GPVHALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI--IYQELSV   91 (510)
T ss_pred             CCeEEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE--Eeecccc
Confidence            33345666776677777  9999999999999999999876532110   00               0111  12111  


Q ss_pred             ----CH-------------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeC
Q 046889          221 ----SI-------------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       221 ----~~-------------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                          +.                         ......+++.+++.....     .+ .+.....+.+.|..++-+++||+
T Consensus        92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDE  171 (510)
T PRK09700         92 IDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDE  171 (510)
T ss_pred             cCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence                00                         112334566666642211     12 24456678888889999999999


Q ss_pred             CCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          266 LWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       266 v~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.+..|..      .+.......|..||++||+...+..++++.+.+
T Consensus       172 Pt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l  218 (510)
T PRK09700        172 PTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVM  218 (510)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            98775422      222222334778999999999887777666433

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.65  E-value=4.1e-08  Score=86.47  Aligned_cols=141  Identities=11%  Similarity=0.249  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC------CH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP------SI  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~------~~  222 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |+.            ....++++.+      +.
T Consensus        21 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   98 (265)
T PRK10253         21 TVAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITV   98 (265)
T ss_pred             EEeeecceEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcH
Confidence            35666776677777  9999999999999999999877543211   000            0011222221      11


Q ss_pred             H----------------------HHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889          223 T----------------------KIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-  273 (333)
Q Consensus       223 ~----------------------~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-  273 (333)
                      .                      .....+++.+++..     ....+ .+.....+.+.+..++-+++||++.+..|.. 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~  178 (265)
T PRK10253         99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH  178 (265)
T ss_pred             HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            0                      11233444445431     11112 3344566888888899999999998765422 


Q ss_pred             -----hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          274 -----RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 -----~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                           .+...... .|..||++||+...+..++++.+.+
T Consensus       179 ~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l  217 (265)
T PRK10253        179 QIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIAL  217 (265)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence                 22222222 3778999999999877777766333

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.65  E-value=4.7e-08  Score=95.08  Aligned_cols=139  Identities=17%  Similarity=0.242  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-eEEEEEeCCCCC------HHHHH------
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-EVAMAVVSQTPS------ITKIQ------  226 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-~~~wv~v~~~~~------~~~~~------  226 (333)
                      ...++.+...+..|+  +++|+|+||+|||||++.+.+...+...   +. .....++++.+.      ..+.+      
T Consensus        20 ~~il~~vs~~i~~Ge--~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~   97 (556)
T PRK11819         20 KQILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAE   97 (556)
T ss_pred             CeeeeCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHH
Confidence            446677777777788  9999999999999999999987643211   11 011123344321      11111      


Q ss_pred             ------------------------------------------------HHHHHHhCCCC----CCCCC-HHHHHHHHHHH
Q 046889          227 ------------------------------------------------DEIAGWLGIKE----LPDND-ELVRASLLCKR  253 (333)
Q Consensus       227 ------------------------------------------------~~i~~~l~~~~----~~~~~-~~~~~~~l~~~  253 (333)
                                                                      ..++..+++..    ....+ .+.....|...
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~a  177 (556)
T PRK11819         98 VKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRL  177 (556)
T ss_pred             HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHH
Confidence                                                            11122223211    01111 23345668888


Q ss_pred             HccCceEEEEeCCCCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          254 IEKQRVLVILDDLWVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       254 l~~k~~LlVlDdv~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..++-+++||++.+..|...      +...+   +..||++||+.+.+..++++.+.|
T Consensus       178 l~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~~~~~~~d~i~~l  233 (556)
T PRK11819        178 LLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRYFLDNVAGWILEL  233 (556)
T ss_pred             HhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEE
Confidence            888999999999998755222      21222   236999999999888777766443

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.65  E-value=2.7e-08  Score=85.15  Aligned_cols=143  Identities=17%  Similarity=0.242  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCC---CeE-------------EEEEeCCCC-------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMF---DEV-------------AMAVVSQTP-------  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f---~~~-------------~wv~v~~~~-------  220 (333)
                      ..++.+...+..++  .++|+|++|+|||||++.+..-..+....   +..             .-..+-|++       
T Consensus        18 ~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~   95 (235)
T COG1122          18 AALKDVSLEIEKGE--RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP   95 (235)
T ss_pred             eeeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence            45555666666677  89999999999999999998766543210   000             001111222       


Q ss_pred             ---------------C---HHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889          221 ---------------S---ITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIELD---  273 (333)
Q Consensus       221 ---------------~---~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---  273 (333)
                                     .   ........+..+++......+      .+..+-.|...|.-++.++|||++.+..|..   
T Consensus        96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~  175 (235)
T COG1122          96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR  175 (235)
T ss_pred             cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence                           1   123344556666664222222      3344567888888899999999998775522   


Q ss_pred             ---hccCCCCCC-CcEEEEeeCChHHHhhcccceEecCC
Q 046889          274 ---RVGIPYGND-GCKFLLTSRSRAACNQMQAHIVDVRT  308 (333)
Q Consensus       274 ---~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l~~  308 (333)
                         .+....... |..||++||+.+....++...+.|+.
T Consensus       176 ~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~  214 (235)
T COG1122         176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDD  214 (235)
T ss_pred             HHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEEC
Confidence               222223333 67899999999998887777755543

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.64  E-value=2.1e-08  Score=91.55  Aligned_cols=140  Identities=16%  Similarity=0.233  Sum_probs=85.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCCC----------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTPS----------  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~~----------  221 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |+.          ....++.|.+.          
T Consensus        17 ~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~en   94 (353)
T PRK10851         17 VLNDISLDIPSGQ--MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDN   94 (353)
T ss_pred             EEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHH
Confidence            3444444455677  9999999999999999999987543211   100          00112222210          


Q ss_pred             ------------------HHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------
Q 046889          222 ------------------ITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------  271 (333)
Q Consensus       222 ------------------~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------  271 (333)
                                        .......+++.+++.....     .+ -+.....|.+.|..++-+++||++.+..|      
T Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~  174 (353)
T PRK10851         95 IAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE  174 (353)
T ss_pred             HHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence                              0112334566666642211     12 34456678889999999999999987644      


Q ss_pred             hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..+..... ..|..+|++||+...+..++++.+.|
T Consensus       175 l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl  210 (353)
T PRK10851        175 LRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVM  210 (353)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            222222222 33788999999999988888777444

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.64  E-value=3e-08  Score=95.07  Aligned_cols=139  Identities=18%  Similarity=0.214  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCC------C
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTP------S  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~------~  221 (333)
                      ..++.+...+.+++  +++|+|+||+|||||++.+.+..++...   ++.             ....++++.+      +
T Consensus        12 ~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   89 (491)
T PRK10982         12 KALDNVNLKVRPHS--IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS   89 (491)
T ss_pred             EeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence            35566666666777  9999999999999999999876543110   000             0011222221      0


Q ss_pred             H---------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh--
Q 046889          222 I---------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--  272 (333)
Q Consensus       222 ~---------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--  272 (333)
                      .                     ......+++.+++.....     .+ .+...-.+.+.|..++-+++||++.+..|.  
T Consensus        90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~  169 (491)
T PRK10982         90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE  169 (491)
T ss_pred             HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence            0                     112334555666532211     12 234456688888889999999999877542  


Q ss_pred             ----hhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          273 ----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       273 ----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                          ..+.......|..||++||+.+.+..++++.+
T Consensus       170 ~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~  205 (491)
T PRK10982        170 VNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEIT  205 (491)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE
Confidence                22222223347789999999988777666553

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.64  E-value=6.9e-08  Score=78.01  Aligned_cols=127  Identities=13%  Similarity=0.200  Sum_probs=75.6

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCK  252 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~  252 (333)
                      +.+++  +++|+|++|+|||||++.+.+...+   ....+++.-......  ........++... .-..-+.....+..
T Consensus        22 i~~g~--~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~--~~~~~~~~i~~~~-qlS~G~~~r~~l~~   93 (157)
T cd00267          22 LKAGE--IVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKL--PLEELRRRIGYVP-QLSGGQRQRVALAR   93 (157)
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccC--CHHHHHhceEEEe-eCCHHHHHHHHHHH
Confidence            44565  9999999999999999999887643   233333321111100  0001111111100 01223445566888


Q ss_pred             HHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          253 RIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       253 ~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .+...+-+++||++.+..|.      ..+.......+..+|++||+......++++.+.+.
T Consensus        94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~  154 (157)
T cd00267          94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLK  154 (157)
T ss_pred             HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            88888999999999876442      22222222236789999999999887766665543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=1e-07  Score=87.71  Aligned_cols=140  Identities=15%  Similarity=0.267  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH---
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI---  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~---  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.          +....+.|.+      +.   
T Consensus        34 ~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN  111 (377)
T PRK11607         34 AVDDVSLTIYKGE--IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQN  111 (377)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHH
Confidence            4455555556677  9999999999999999999977543211   100          0111222322      11   


Q ss_pred             ---------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hc
Q 046889          223 ---------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RV  275 (333)
Q Consensus       223 ---------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l  275 (333)
                                     ......+++.+++......     + .+..+-.|.+.|..++-+|+||++.+..|..      ..
T Consensus       112 i~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~  191 (377)
T PRK11607        112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE  191 (377)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence                           1123455666666422221     2 3455667889999999999999998764421      11


Q ss_pred             cCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          276 GIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       276 ~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .... ...|..+|++||+...+..++++.+.|
T Consensus       192 l~~l~~~~g~tii~vTHd~~ea~~laDri~vl  223 (377)
T PRK11607        192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIM  223 (377)
T ss_pred             HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            1111 233778999999999888887776433

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.64  E-value=1.2e-07  Score=83.18  Aligned_cols=140  Identities=11%  Similarity=0.163  Sum_probs=83.3

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH--h----hcC--CC--------------eEEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK--E----KKM--FD--------------EVAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~--~----~~~--f~--------------~~~wv~v~~~~~  221 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...  +    .+.  ++              .....++++.+.
T Consensus        27 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~  104 (260)
T PRK10744         27 HALKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT  104 (260)
T ss_pred             EEeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence            45666766677788  999999999999999999987753  0    110  00              001122233211


Q ss_pred             -----HH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 -----IT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 -----~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                           ..                   ....++++.++..         .....+ .+.....+.+.+..++-+++||++.
T Consensus       105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt  184 (260)
T PRK10744        105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC  184 (260)
T ss_pred             cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence                 10                   1122334444431         111122 3444566888888899999999998


Q ss_pred             Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|.      ..+..... .+..||++||+...+..++++.+.+
T Consensus       185 ~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l  228 (260)
T PRK10744        185 SALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFM  228 (260)
T ss_pred             ccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEE
Confidence            76442      22222222 2567999999999877776666444

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=7e-08  Score=87.34  Aligned_cols=137  Identities=11%  Similarity=0.212  Sum_probs=85.2

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   |+.               .....+.|.+      
T Consensus        30 ~l~~vsl~i~~Ge--~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p  107 (327)
T PRK11308         30 ALDGVSFTLERGK--TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP  107 (327)
T ss_pred             EEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence            4556666666777  9999999999999999999976543210   000               0112233332      


Q ss_pred             --CHH-------------------HHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 --SIT-------------------KIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 --~~~-------------------~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                        ...                   ....++++.+++.. .     ...+ .+.....|...|..++-+||+|++.+..|.
T Consensus       108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~  187 (327)
T PRK11308        108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV  187 (327)
T ss_pred             ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence              111                   12334555555531 1     1112 344566788888899999999999877542


Q ss_pred             ------hhccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889          273 ------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       273 ------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                            ..+..... ..|..||++||+..++..++++.
T Consensus       188 ~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv  225 (327)
T PRK11308        188 SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEV  225 (327)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence                  22222222 23788999999999988777766

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.64  E-value=2.3e-08  Score=91.83  Aligned_cols=132  Identities=14%  Similarity=0.236  Sum_probs=80.7

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------------EEEEEeCCCCC------H-
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------------VAMAVVSQTPS------I-  222 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------------~~wv~v~~~~~------~-  222 (333)
                      +..++  +++|+|++|+|||||++.+.+...+...   ++.                    .....+.+.+.      . 
T Consensus        47 i~~Ge--i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~  124 (382)
T TIGR03415        47 IEEGE--ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVE  124 (382)
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHH
Confidence            34566  8999999999999999999876543210   000                    01122223221      1 


Q ss_pred             -----------------HHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889          223 -----------------TKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD  273 (333)
Q Consensus       223 -----------------~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~  273 (333)
                                       ......+++.+++.......      .+.....|.+.|..++-++++|++.+..|      +.
T Consensus       125 eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~  204 (382)
T TIGR03415       125 ENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQ  204 (382)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence                             11223455666664322222      23456678888999999999999987644      22


Q ss_pred             hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+..... ..|..||++||+.+.+..++++.+.|
T Consensus       205 ~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl  238 (382)
T TIGR03415       205 DELLELQAKLNKTIIFVSHDLDEALKIGNRIAIM  238 (382)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            2222222 23778999999999887777766433

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.64  E-value=6.8e-08  Score=84.40  Aligned_cols=140  Identities=17%  Similarity=0.165  Sum_probs=82.4

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--Hh-hc----------C-----CCeEEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KE-KK----------M-----FDEVAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~-~~----------~-----f~~~~wv~v~~~~------  220 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+..  .+ .+          .     +.......+++.+      
T Consensus        22 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~   99 (252)
T CHL00131         22 ILKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV   99 (252)
T ss_pred             eeecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence            5666666677777  99999999999999999998741  11 11          0     0110112232321      


Q ss_pred             CHH-------------------------HHHHHHHHHhCCCC------C-CCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          221 SIT-------------------------KIQDEIAGWLGIKE------L-PDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       221 ~~~-------------------------~~~~~i~~~l~~~~------~-~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                      +..                         .....++..+++..      . ...+ .+.....+.+.+..++-+++||++.
T Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  179 (252)
T CHL00131        100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD  179 (252)
T ss_pred             cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence            111                         01123445555431      1 1122 3345567888888999999999998


Q ss_pred             Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhc-ccceEec
Q 046889          268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQM-QAHIVDV  306 (333)
Q Consensus       268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~-~~~~~~l  306 (333)
                      +..|..      .+.......|..||++||+....... ++..+.+
T Consensus       180 ~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l  225 (252)
T CHL00131        180 SGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVM  225 (252)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEE
Confidence            775422      22222233477899999999887654 4544333

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.64  E-value=2.5e-07  Score=87.32  Aligned_cols=140  Identities=15%  Similarity=0.185  Sum_probs=84.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEE----eCCCCCHH-------------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAV----VSQTPSIT-------------  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~----v~~~~~~~-------------  223 (333)
                      .++.+...+..|+  +++|+|++|+|||||++.+.+...+...   ++. ...+.    .....+..             
T Consensus        39 IL~nVSfsI~~GE--ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~  116 (549)
T PRK13545         39 ALNNISFEVPEGE--IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT  116 (549)
T ss_pred             EEeeeEEEEeCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence            3455555566677  9999999999999999999987643221   110 00010    01111111             


Q ss_pred             -----HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEE
Q 046889          224 -----KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKF  286 (333)
Q Consensus       224 -----~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~v  286 (333)
                           .....+++.+++...     ...+ .+..+..+.+.|..++-+++||++.+..|..      .+.......|..|
T Consensus       117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TI  196 (549)
T PRK13545        117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTI  196 (549)
T ss_pred             HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence                 112234555555321     1222 2344556888888899999999998775432      2222223447789


Q ss_pred             EEeeCChHHHhhcccceEec
Q 046889          287 LLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       287 ivTTr~~~v~~~~~~~~~~l  306 (333)
                      |++||+...+..++++.+.|
T Consensus       197 IIVSHdl~~i~~l~DrIivL  216 (549)
T PRK13545        197 FFISHSLSQVKSFCTKALWL  216 (549)
T ss_pred             EEEECCHHHHHHhCCEEEEE
Confidence            99999998877776666433

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.64  E-value=1.1e-07  Score=84.01  Aligned_cols=139  Identities=20%  Similarity=0.255  Sum_probs=80.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+...+...   |+               ......+++.+      
T Consensus        22 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~   99 (269)
T PRK11831         22 IFDNISLTVPRGK--ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM   99 (269)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence            4455555555677  9999999999999999999977543210   00               00112223322      


Q ss_pred             CHHH-------------------HHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          221 SITK-------------------IQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       221 ~~~~-------------------~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                      ++.+                   ....+++.+++....     ..+ -+.....+.+.+..++-+++||++.+..|..  
T Consensus       100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~  179 (269)
T PRK11831        100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM  179 (269)
T ss_pred             CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            1111                   111234445543211     112 2334556788888889999999998764422  


Q ss_pred             ----hccCCCCC-CCcEEEEeeCChHHHhhcccceEe
Q 046889          274 ----RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVD  305 (333)
Q Consensus       274 ----~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~  305 (333)
                          .+...... .|..||++||+...+..++++.+.
T Consensus       180 ~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~  216 (269)
T PRK11831        180 GVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYI  216 (269)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEE
Confidence                22222222 377899999998877766665533

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.63  E-value=1e-07  Score=79.65  Aligned_cols=139  Identities=13%  Similarity=0.139  Sum_probs=79.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH--h-hcC--CCe--------EEEEEeCCCCCH---HHHHHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK--E-KKM--FDE--------VAMAVVSQTPSI---TKIQDE  228 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~--~-~~~--f~~--------~~wv~v~~~~~~---~~~~~~  228 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...  + .+.  |+.        .....+++.+..   ..+.+.
T Consensus        22 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   99 (192)
T cd03232          22 LLNNISGYVKPGT--LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA   99 (192)
T ss_pred             eEEccEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence            3444544455666  999999999999999999997431  1 110  110        112233333211   122222


Q ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChH-HHhhccc
Q 046889          229 IAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRA-ACNQMQA  301 (333)
Q Consensus       229 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~-v~~~~~~  301 (333)
                      +.-.....  .-..-+.....+.+.+..++-++++|++.+..|.      ..+.......|..||++||+.+ ....+++
T Consensus       100 l~~~~~~~--~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d  177 (192)
T cd03232         100 LRFSALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFD  177 (192)
T ss_pred             HHHHHHHh--cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCC
Confidence            22111000  1222344556688888889999999999876442      2222222334788999999987 3455556


Q ss_pred             ceEecC
Q 046889          302 HIVDVR  307 (333)
Q Consensus       302 ~~~~l~  307 (333)
                      +.+.|+
T Consensus       178 ~i~~l~  183 (192)
T cd03232         178 RLLLLK  183 (192)
T ss_pred             EEEEEc
Confidence            655553

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.63  E-value=5.3e-08  Score=84.87  Aligned_cols=139  Identities=17%  Similarity=0.242  Sum_probs=79.3

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--C--------Ce----EEEEEeCCCC------CH---
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--F--------DE----VAMAVVSQTP------SI---  222 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f--------~~----~~wv~v~~~~------~~---  222 (333)
                      ++.+...+..++  +++|+|++|+|||||++.+.+.....+.  |        ..    ....++++.+      +.   
T Consensus        12 l~~vsl~i~~Ge--i~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n   89 (248)
T PRK03695         12 LGPLSAEVRAGE--ILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY   89 (248)
T ss_pred             ecceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence            334444455666  9999999999999999999865421110  0        00    0112222221      00   


Q ss_pred             --------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHcc-------CceEEEEeCCCCchh----
Q 046889          223 --------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEK-------QRVLVILDDLWVQIE----  271 (333)
Q Consensus       223 --------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~-------k~~LlVlDdv~~~~~----  271 (333)
                                    .....++++.+++...     ...+ .+.....+...+..       ++-+++||++.+..|    
T Consensus        90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~  169 (248)
T PRK03695         90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ  169 (248)
T ss_pred             HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence                          1123445555655321     1122 23445567777765       558999999987644    


Q ss_pred             --hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                        +..+.......|..||++||+.+....+++..+.+
T Consensus       170 ~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l  206 (248)
T PRK03695        170 AALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLL  206 (248)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence              22222223334778999999998776666665333

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.63  E-value=1.3e-06  Score=86.10  Aligned_cols=134  Identities=16%  Similarity=0.200  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCC----eEEEEEeCCCC--------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFD----EVAMAVVSQTP--------  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~----~~~wv~v~~~~--------  220 (333)
                      ..++++...+.+|+  .|+|+|.+|+|||||++.+.+...+..           +++    .....+++|+.        
T Consensus       487 ~vL~~isL~I~~Ge--~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~  564 (709)
T COG2274         487 PVLEDLSLEIPPGE--KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR  564 (709)
T ss_pred             chhhceeEEeCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence            58888888888888  999999999999999999987665432           111    01122344432        


Q ss_pred             ----------CHHHHHHHH--------HHHhCC--------CCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhh
Q 046889          221 ----------SITKIQDEI--------AGWLGI--------KELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDR  274 (333)
Q Consensus       221 ----------~~~~~~~~i--------~~~l~~--------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~  274 (333)
                                +.+++.+..        +.++..        .+..-+..+.++-.+.+.|-.++-+|+||++.+..|-..
T Consensus       565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~s  644 (709)
T COG2274         565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET  644 (709)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhH
Confidence                      222322211        111111        011222345567789999999999999999987754222


Q ss_pred             c-----cCCCCCCCcEEEEeeCChHHHhhc
Q 046889          275 V-----GIPYGNDGCKFLLTSRSRAACNQM  299 (333)
Q Consensus       275 l-----~~~~~~~g~~vivTTr~~~v~~~~  299 (333)
                      -     .+.....|+.+|++||.......+
T Consensus       645 E~~I~~~L~~~~~~~T~I~IaHRl~ti~~a  674 (709)
T COG2274         645 EAIILQNLLQILQGRTVIIIAHRLSTIRSA  674 (709)
T ss_pred             HHHHHHHHHHHhcCCeEEEEEccchHhhhc
Confidence            1     011122367889999988876544

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.63  E-value=1.2e-07  Score=80.13  Aligned_cols=138  Identities=17%  Similarity=0.183  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCC-----H-----------HHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPS-----I-----------TKI  225 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~-----~-----------~~~  225 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+..++...   |+.. ..++++.+.     .           ...
T Consensus        20 il~~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~-i~~~~q~~~l~~~t~~enl~~~~~~~~~~   96 (204)
T cd03250          20 TLKDINLEVPKGE--LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS-IAYVSQEPWIQNGTIRENILFGKPFDEER   96 (204)
T ss_pred             eeeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCE-EEEEecCchhccCcHHHHhccCCCcCHHH
Confidence            5566666667777  9999999999999999999987654321   1111 122233211     0           111


Q ss_pred             HHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------h-ccCCCCC
Q 046889          226 QDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------R-VGIPYGN  281 (333)
Q Consensus       226 ~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~-l~~~~~~  281 (333)
                      ....++.++..                .....+ .+.....+.+.+..++-++++|++.+..+..      . +......
T Consensus        97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~  176 (204)
T cd03250          97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL  176 (204)
T ss_pred             HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc
Confidence            11222222110                011122 3445667888999999999999998764322      2 1111223


Q ss_pred             CCcEEEEeeCChHHHhhcccceEec
Q 046889          282 DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .|..||++||+...... +++.+.+
T Consensus       177 ~~~tvi~~sh~~~~~~~-~d~i~~l  200 (204)
T cd03250         177 NNKTRILVTHQLQLLPH-ADQIVVL  200 (204)
T ss_pred             CCCEEEEEeCCHHHHhh-CCEEEEE
Confidence            37889999999988776 5555544

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=1.5e-07  Score=83.65  Aligned_cols=139  Identities=15%  Similarity=0.227  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP-----  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~-----  220 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+...+...   ++.                ....++++.+     
T Consensus        22 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~   99 (280)
T PRK13649         22 ALFDVNLTIEDGS--YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF   99 (280)
T ss_pred             eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence            4455555556677  9999999999999999999876432210   000                0011222221     


Q ss_pred             --CHH------------------HHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889          221 --SIT------------------KIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD  273 (333)
Q Consensus       221 --~~~------------------~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~  273 (333)
                        +..                  .....+++.+++.. .     ...+ .+.....+...+..++-+++||++.+..|..
T Consensus       100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~  179 (280)
T PRK13649        100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK  179 (280)
T ss_pred             cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence              110                  01223344555531 1     1112 2444566888888899999999998775422


Q ss_pred             ------hccCCCCCCCcEEEEeeCChHHHhhcccceEe
Q 046889          274 ------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVD  305 (333)
Q Consensus       274 ------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~  305 (333)
                            .+.......|..||++||+...+..+++..+.
T Consensus       180 ~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~  217 (280)
T PRK13649        180 GRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYV  217 (280)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEE
Confidence                  22222223477899999999987766666533

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.62  E-value=5.5e-08  Score=93.57  Aligned_cols=141  Identities=18%  Similarity=0.237  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh---hcC--CCe-------------EEEEEeCCCC-----
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE---KKM--FDE-------------VAMAVVSQTP-----  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~~--f~~-------------~~wv~v~~~~-----  220 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+.+...+   .+.  ++.             ....++++.+     
T Consensus        15 ~il~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~   92 (500)
T TIGR02633        15 KALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE   92 (500)
T ss_pred             EeecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence            35666666667777  9999999999999999999876542   110  100             0011222221     


Q ss_pred             -CH----------------------HHHHHHHHHHhCCCCCC------CCC-HHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889          221 -SI----------------------TKIQDEIAGWLGIKELP------DND-ELVRASLLCKRIEKQRVLVILDDLWVQI  270 (333)
Q Consensus       221 -~~----------------------~~~~~~i~~~l~~~~~~------~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~  270 (333)
                       +.                      ......+++.+++....      ..+ .+...-.+.+.|..++-+++||++.+..
T Consensus        93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L  172 (500)
T TIGR02633        93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL  172 (500)
T ss_pred             CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence             00                      11233456666664221      112 2344567888888899999999998774


Q ss_pred             h------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          271 E------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       271 ~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      |      +..+.......|..||++||+.+.+..++++.+.|
T Consensus       173 D~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l  214 (500)
T TIGR02633       173 TEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI  214 (500)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEE
Confidence            4      22222222334778999999999887777766444

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=2e-07  Score=82.79  Aligned_cols=138  Identities=15%  Similarity=0.231  Sum_probs=81.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----C--CCe------------EEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----M--FDE------------VAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~--f~~------------~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+++...+..    .  ++.            ....++++.+      
T Consensus        22 ~l~~v~l~i~~Ge--~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~   99 (282)
T PRK13640         22 ALNDISFSIPRGS--WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG   99 (282)
T ss_pred             ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence            4555555556677  999999999999999999998764321    0  000            0011222221      


Q ss_pred             -CHH------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          221 -SIT------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       221 -~~~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                       ++.                  .....+++.+++...     ...+ .+.....+...|..++-+++||++.+..|..  
T Consensus       100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~  179 (282)
T PRK13640        100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK  179 (282)
T ss_pred             CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence             110                  112334555555321     1112 3344567888888999999999998775422  


Q ss_pred             ----hccCCCC-CCCcEEEEeeCChHHHhhcccceEe
Q 046889          274 ----RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVD  305 (333)
Q Consensus       274 ----~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~  305 (333)
                          .+..... ..|..||++||+..... .+++.+.
T Consensus       180 ~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~  215 (282)
T PRK13640        180 EQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLV  215 (282)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEE
Confidence                2222222 23778999999998875 4555433

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.62  E-value=6e-08  Score=84.82  Aligned_cols=140  Identities=13%  Similarity=0.196  Sum_probs=82.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-------------C---C--------eEEEEEeCCCC
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-------------F---D--------EVAMAVVSQTP  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------f---~--------~~~wv~v~~~~  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...             .   .        ......+++.+
T Consensus        18 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~   95 (253)
T TIGR02323        18 GCRDVSFDLYPGE--VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP   95 (253)
T ss_pred             EeecceEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence            4555666666777  9999999999999999999876532110             0   0        00011222221


Q ss_pred             --------CH-------------------HHHHHHHHHHhCCCC-CC-----CCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889          221 --------SI-------------------TKIQDEIAGWLGIKE-LP-----DND-ELVRASLLCKRIEKQRVLVILDDL  266 (333)
Q Consensus       221 --------~~-------------------~~~~~~i~~~l~~~~-~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv  266 (333)
                              ..                   ......+++.+++.. ..     ..+ .+.....+.+.+..++-+++||++
T Consensus        96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP  175 (253)
T TIGR02323        96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP  175 (253)
T ss_pred             ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                    00                   011223445555521 11     112 234566788888899999999999


Q ss_pred             CCchhhh------hccCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          267 WVQIELD------RVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       267 ~~~~~~~------~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+..|..      .+.... ...|..||++||+.+.+..++++.+.+
T Consensus       176 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l  222 (253)
T TIGR02323       176 TGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVM  222 (253)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            8775422      221222 223778999999999877666665433

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=1.4e-07  Score=83.67  Aligned_cols=137  Identities=15%  Similarity=0.229  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE------------EEEEeCCCC-------C-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV------------AMAVVSQTP-------S-  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~------------~wv~v~~~~-------~-  221 (333)
                      .++.+...+.+|+  +++|+|++|+|||||++.+++...+...   |+..            ....+.+.+       + 
T Consensus        22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv   99 (279)
T PRK13650         22 TLNDVSFHVKQGE--WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV   99 (279)
T ss_pred             eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence            4555555556677  9999999999999999999977543211   0000            011222221       0 


Q ss_pred             --------------H---HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-----
Q 046889          222 --------------I---TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-----  273 (333)
Q Consensus       222 --------------~---~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-----  273 (333)
                                    .   ......+++.+++...     ...+ .+.....+.+.|..++-+++||++.+..|..     
T Consensus       100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l  179 (279)
T PRK13650        100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL  179 (279)
T ss_pred             HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence                          0   1122344555555321     1122 3445667888889999999999998775432     


Q ss_pred             -hccCCCCC-CCcEEEEeeCChHHHhhcccceE
Q 046889          274 -RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       274 -~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                       .+...... .|..||++||+.+... .+++.+
T Consensus       180 ~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~  211 (279)
T PRK13650        180 IKTIKGIRDDYQMTVISITHDLDEVA-LSDRVL  211 (279)
T ss_pred             HHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEE
Confidence             22222222 3788999999998874 455543

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.62  E-value=5.9e-08  Score=93.30  Aligned_cols=139  Identities=16%  Similarity=0.273  Sum_probs=84.4

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe-------------EEEEEeCCCC---------
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE-------------VAMAVVSQTP---------  220 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-------------~~wv~v~~~~---------  220 (333)
                      ++.+...+..++  +++|+|+||+|||||++.+.+..++..   .++.             ....++++.+         
T Consensus       268 l~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~  345 (501)
T PRK10762        268 VNDVSFTLRKGE--ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM  345 (501)
T ss_pred             cccceEEEcCCc--EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence            555555556677  999999999999999999987643211   0100             0012233321         


Q ss_pred             CH------------------------HHHHHHHHHHhCCC-CCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889          221 SI------------------------TKIQDEIAGWLGIK-ELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQ  269 (333)
Q Consensus       221 ~~------------------------~~~~~~i~~~l~~~-~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~  269 (333)
                      +.                        ......+++.+++. .....     + .+...-.+...+..++-+++||++.+.
T Consensus       346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~  425 (501)
T PRK10762        346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG  425 (501)
T ss_pred             cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence            01                        11233456666662 21121     1 344566788888889999999999877


Q ss_pred             hhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          270 IEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       270 ~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .|.      ..+.......|..||++||+.+.+..+++..+.+
T Consensus       426 LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l  468 (501)
T PRK10762        426 VDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVM  468 (501)
T ss_pred             CCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence            542      2222222334778999999999887777766433

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.62  E-value=4.1e-08  Score=82.57  Aligned_cols=128  Identities=17%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT-  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~-  223 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.           ....++++..      +.. 
T Consensus        15 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   92 (198)
T TIGR01189        15 LFEGLSFTLNAGE--ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE   92 (198)
T ss_pred             EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHH
Confidence            4445555566677  9999999999999999999876532210   000           0112233221      111 


Q ss_pred             -------------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCC
Q 046889          224 -------------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIP  278 (333)
Q Consensus       224 -------------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~  278 (333)
                                   .....+++.+++......     + .+...-.+.+.+..++-+++||++.+..|..      .+...
T Consensus        93 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  172 (198)
T TIGR01189        93 NLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA  172 (198)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence                         112334455555321111     1 2334556888888899999999998775422      22222


Q ss_pred             CCCCCcEEEEeeCChH
Q 046889          279 YGNDGCKFLLTSRSRA  294 (333)
Q Consensus       279 ~~~~g~~vivTTr~~~  294 (333)
                      ....|..||++||+..
T Consensus       173 ~~~~~~tii~~sH~~~  188 (198)
T TIGR01189       173 HLARGGIVLLTTHQDL  188 (198)
T ss_pred             HHhCCCEEEEEEcccc
Confidence            2234678999999874

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.62  E-value=5.2e-08  Score=93.66  Aligned_cols=139  Identities=18%  Similarity=0.217  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCC------C
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTP------S  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~------~  221 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+.+...+...   |..             ....++.+.+      +
T Consensus        18 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t   95 (501)
T PRK11288         18 KALDDISFDCRAGQ--VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT   95 (501)
T ss_pred             EEEeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence            35566666666777  9999999999999999999876532110   000             0011122211      0


Q ss_pred             H---------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh--
Q 046889          222 I---------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--  272 (333)
Q Consensus       222 ~---------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--  272 (333)
                      .                     ..-...+++.+++.....     .+ .+.....+.+.|..++-+++||++.+..|.  
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~  175 (501)
T PRK11288         96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE  175 (501)
T ss_pred             HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence            0                     112334566666642211     12 334456688888889999999999877542  


Q ss_pred             ----hhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          273 ----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       273 ----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                          ..+.......|..||++||+...+..++++.+
T Consensus       176 ~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~  211 (501)
T PRK11288        176 IEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAIT  211 (501)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence                22222223347789999999998777666553

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=4e-08  Score=87.30  Aligned_cols=139  Identities=18%  Similarity=0.245  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCC------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTP------  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~------  220 (333)
                      ..++.+...+..|+  +++|+|++|+|||||++.+.+...+...   ++.              ....++++.+      
T Consensus        20 ~~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~   97 (283)
T PRK13636         20 HALKGININIKKGE--VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS   97 (283)
T ss_pred             eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence            35666666677788  9999999999999999999977543210   000              0112223322      


Q ss_pred             -CH------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          221 -SI------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       221 -~~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                       +.                  ......+++.+++...     ...+ .+.....+.+.|..++-+++||++.+..|..  
T Consensus        98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~  177 (283)
T PRK13636         98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV  177 (283)
T ss_pred             ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence             00                  0112333444554311     1122 3444566888888899999999998775422  


Q ss_pred             ----hccCCCCC-CCcEEEEeeCChHHHhhcccceE
Q 046889          274 ----RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       274 ----~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                          .+...... .|..||++||+.+.+..++++.+
T Consensus       178 ~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~  213 (283)
T PRK13636        178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVF  213 (283)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE
Confidence                22222222 37789999999998776666653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.62  E-value=6.8e-08  Score=93.01  Aligned_cols=138  Identities=16%  Similarity=0.279  Sum_probs=84.2

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe-------------EEEEEeCCCC---------
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE-------------VAMAVVSQTP---------  220 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-------------~~wv~v~~~~---------  220 (333)
                      ++.+...+..++  +++|+|+||+|||||++.+.+..++..   .|+.             ....++++.+         
T Consensus       279 l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~  356 (510)
T PRK15439        279 FRNISLEVRAGE--ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA  356 (510)
T ss_pred             ccceeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence            555655556677  999999999999999999987643211   0000             0112233221         


Q ss_pred             CH---------------------HHHHHHHHHHhCCC-CCCCC------CHHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 SI---------------------TKIQDEIAGWLGIK-ELPDN------DELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 ~~---------------------~~~~~~i~~~l~~~-~~~~~------~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                      +.                     ......+++.+++. .....      ..+...-.|...+..++-+|+||++.+..|.
T Consensus       357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~  436 (510)
T PRK15439        357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV  436 (510)
T ss_pred             cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence            11                     01123456666663 21111      2344566788888889999999999877542


Q ss_pred             h------hccCCCCCCCcEEEEeeCChHHHhhcccceEe
Q 046889          273 D------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVD  305 (333)
Q Consensus       273 ~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~  305 (333)
                      .      .+.......|..||++||+.+.+..++++.+.
T Consensus       437 ~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~  475 (510)
T PRK15439        437 SARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLV  475 (510)
T ss_pred             hHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence            2      22222223477899999999988877766643

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.61  E-value=8.4e-08  Score=80.68  Aligned_cols=146  Identities=18%  Similarity=0.208  Sum_probs=90.6

Q ss_pred             ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc--------------------------------
Q 046889          159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK--------------------------------  206 (333)
Q Consensus       159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------------------------------  206 (333)
                      .++.+..+..|.=.+..++  --.|+|+||+|||||++.+.....+..                                
T Consensus        40 ~r~gk~iL~~isW~V~~ge--~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~  117 (257)
T COG1119          40 RRNGKKILGDLSWQVNPGE--HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHE  117 (257)
T ss_pred             EECCEeeccccceeecCCC--cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHh
Confidence            3456677777777777777  688999999999999999986654311                                


Q ss_pred             CCCe-------EE--EE-E--eCC-CCCH--HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeC
Q 046889          207 MFDE-------VA--MA-V--VSQ-TPSI--TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       207 ~f~~-------~~--wv-~--v~~-~~~~--~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                      +|..       +.  |. +  +.+ ..+.  ......+++.++.....+.     + -+.....+.+.|-.++-|||||+
T Consensus       118 ~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDE  197 (257)
T COG1119         118 RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDE  197 (257)
T ss_pred             hcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecC
Confidence            1110       00  00 0  011 1121  2345567777776533222     2 23445678899999999999999


Q ss_pred             CCCchhhhhc--------cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          266 LWVQIELDRV--------GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       266 v~~~~~~~~l--------~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.+..|+...        ..+....+..+|++||..+-+..+-++...+
T Consensus       198 P~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll  246 (257)
T COG1119         198 PAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL  246 (257)
T ss_pred             ccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEe
Confidence            9877553322        1222333667899999887766666655433

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=1.5e-07  Score=84.94  Aligned_cols=141  Identities=16%  Similarity=0.219  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------------------EE
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------------------VA  212 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------------------~~  212 (333)
                      ..++.+...+..|+  +++|+|++|+|||||++.+.+...+...   ++.                            ..
T Consensus        40 ~~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (320)
T PRK13631         40 VALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR  117 (320)
T ss_pred             cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence            36677777677777  9999999999999999999976543211   000                            00


Q ss_pred             EEEeCCCC-------CH------------------HHHHHHHHHHhCCC-CCC-----CCC-HHHHHHHHHHHHccCceE
Q 046889          213 MAVVSQTP-------SI------------------TKIQDEIAGWLGIK-ELP-----DND-ELVRASLLCKRIEKQRVL  260 (333)
Q Consensus       213 wv~v~~~~-------~~------------------~~~~~~i~~~l~~~-~~~-----~~~-~~~~~~~l~~~l~~k~~L  260 (333)
                      ...+++.+       +.                  ......+++.+++. ...     ..+ .+..+..|.+.|..++-+
T Consensus       118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i  197 (320)
T PRK13631        118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI  197 (320)
T ss_pred             EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            11223321       00                  01123345555553 111     112 344566788889999999


Q ss_pred             EEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          261 VILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       261 lVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      |+||++.+..|..      .+.......|..||++||+.+.+..++++.+.|
T Consensus       198 LLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl  249 (320)
T PRK13631        198 LIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVM  249 (320)
T ss_pred             EEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            9999998775422      222222234778999999998766666665433

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.61  E-value=6.9e-07  Score=81.16  Aligned_cols=161  Identities=15%  Similarity=0.134  Sum_probs=87.4

Q ss_pred             ccccccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKD-----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQD  227 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~  227 (333)
                      |.....|+|++..++.+...+..     .....+.|+||.|+||||||+.+.+.....  +   .+...+. ......+.
T Consensus        21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~   94 (328)
T PRK00080         21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA   94 (328)
T ss_pred             cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence            44567899999999888776642     334578899999999999999999877521  1   1111111 11112223


Q ss_pred             HHHHHhCCCC------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhcc-
Q 046889          228 EIAGWLGIKE------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQ-  300 (333)
Q Consensus       228 ~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~-  300 (333)
                      .++..++...      ....+ ......+...+.+.+..+++|+..+...+... +|   ..+-|..||+...+...+. 
T Consensus        95 ~~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~-l~---~~~li~at~~~~~l~~~L~s  169 (328)
T PRK00080         95 AILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRLD-LP---PFTLIGATTRAGLLTSPLRD  169 (328)
T ss_pred             HHHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceeec-CC---CceEEeecCCcccCCHHHHH
Confidence            3333332110      00000 11122234444445555555554433222211 11   1344555666443322221 


Q ss_pred             --cceEecCCCCHHHHHHHHHhhccc
Q 046889          301 --AHIVDVRTLTEEESWRSAEGKRRV  324 (333)
Q Consensus       301 --~~~~~l~~L~~~e~~~lf~~~a~~  324 (333)
                        ...+.++++++++..+++.+.+..
T Consensus       170 Rf~~~~~l~~~~~~e~~~il~~~~~~  195 (328)
T PRK00080        170 RFGIVQRLEFYTVEELEKIVKRSARI  195 (328)
T ss_pred             hcCeeeecCCCCHHHHHHHHHHHHHH
Confidence              223899999999999999987643

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.61  E-value=7.4e-08  Score=90.55  Aligned_cols=154  Identities=15%  Similarity=0.213  Sum_probs=96.6

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-CCCeE----------------------EEEEeCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-MFDEV----------------------AMAVVSQTP  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~----------------------~wv~v~~~~  220 (333)
                      ..+++++..+..|+  +++|+|.+|+||||++..+.+...... .....                      ....+.|.+
T Consensus        23 ~~v~~vsf~v~~GE--~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p  100 (539)
T COG1123          23 PAVRDVSFEVEPGE--ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP  100 (539)
T ss_pred             eeeecceEEecCCc--EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCc
Confidence            46677777788888  999999999999999999987754331 01111                      112333332


Q ss_pred             ----C-----------------------HHHHHHHHHHHhCCCCCCCC--------CHHHHHHHHHHHHccCceEEEEeC
Q 046889          221 ----S-----------------------ITKIQDEIAGWLGIKELPDN--------DELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       221 ----~-----------------------~~~~~~~i~~~l~~~~~~~~--------~~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                          +                       ......++++++++++....        .-+.+...+...|..++-|||+|+
T Consensus       101 ~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE  180 (539)
T COG1123         101 MTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE  180 (539)
T ss_pred             hhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC
Confidence                1                       11222345555565422111        134456778899999999999999


Q ss_pred             CCCchh------hhhccC-CCCCCCcEEEEeeCChHHHhhcccceEecC---CCCHHHHHHHHH
Q 046889          266 LWVQIE------LDRVGI-PYGNDGCKFLLTSRSRAACNQMQAHIVDVR---TLTEEESWRSAE  319 (333)
Q Consensus       266 v~~~~~------~~~l~~-~~~~~g~~vivTTr~~~v~~~~~~~~~~l~---~L~~~e~~~lf~  319 (333)
                      +.+..|      +-.+.. .....|..+|++||+..+...++++.+.|.   -.....+.++|.
T Consensus       181 PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~  244 (539)
T COG1123         181 PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS  244 (539)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence            987644      222211 123458899999999999988888874332   233344444444

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.61  E-value=3.1e-07  Score=79.34  Aligned_cols=139  Identities=17%  Similarity=0.223  Sum_probs=81.9

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CH----
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SI----  222 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~----  222 (333)
                      ++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++          ......+++.+      +.    
T Consensus        15 l~~is~~i~~Ge--~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l   92 (235)
T cd03299          15 LKNVSLEVERGD--YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI   92 (235)
T ss_pred             eeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence            444444455667  9999999999999999999876543221   00          00112222221      11    


Q ss_pred             --------------HHHHHHHHHHhCCCCC-----CC-CCHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhcc
Q 046889          223 --------------TKIQDEIAGWLGIKEL-----PD-NDELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVG  276 (333)
Q Consensus       223 --------------~~~~~~i~~~l~~~~~-----~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~  276 (333)
                                    ......+++.+++...     .. ...+.....+.+.+..++-+++||++.+..|      +..+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  172 (235)
T cd03299          93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL  172 (235)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence                          0112234555554311     11 2234456678888888999999999987644      22221


Q ss_pred             CCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          277 IPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       277 ~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .... ..|..||++||+...+..++++.+.+
T Consensus       173 ~~~~~~~~~tili~tH~~~~~~~~~d~i~~l  203 (235)
T cd03299         173 KKIRKEFGVTVLHVTHDFEEAWALADKVAIM  203 (235)
T ss_pred             HHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            2222 23788999999999877666666433

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.60  E-value=8.2e-08  Score=80.78  Aligned_cols=156  Identities=19%  Similarity=0.141  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC----eEEEE-EeCCCCCH-----------------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD----EVAMA-VVSQTPSI-----------------  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~----~~~wv-~v~~~~~~-----------------  222 (333)
                      .++++...+..++  .++|+|.||+|||||.+.+.+-.++....-    .+.|. .++..+++                 
T Consensus        42 aL~disf~i~~Ge--~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~  119 (249)
T COG1134          42 ALKDISFEIYKGE--RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL  119 (249)
T ss_pred             EecCceEEEeCCC--EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence            4556666667788  899999999999999999998877654321    12221 11222211                 


Q ss_pred             -----HHHHHHHHHHhCCCCCCCCCHHH------HHHHHHHHHccCceEEEEeCCCCchh--hh----hccCCCCCCCcE
Q 046889          223 -----TKIQDEIAGWLGIKELPDNDELV------RASLLCKRIEKQRVLVILDDLWVQIE--LD----RVGIPYGNDGCK  285 (333)
Q Consensus       223 -----~~~~~~i~~~l~~~~~~~~~~~~------~~~~l~~~l~~k~~LlVlDdv~~~~~--~~----~l~~~~~~~g~~  285 (333)
                           .....+|.+--.+.+.-..+...      .+-.+.-....++-+|++|++-..-|  +.    .....+...+..
T Consensus       120 ~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~t  199 (249)
T COG1134         120 TRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKT  199 (249)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCE
Confidence                 11222332222222222222111      11122222334778999998865522  11    111223233577


Q ss_pred             EEEeeCChHHHhhcccceEecCCC------CHHHHHHHHHhhc
Q 046889          286 FLLTSRSRAACNQMQAHIVDVRTL------TEEESWRSAEGKR  322 (333)
Q Consensus       286 vivTTr~~~v~~~~~~~~~~l~~L------~~~e~~~lf~~~a  322 (333)
                      ||++||+......+|+..+.++.=      +.++....+....
T Consensus       200 iv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~~  242 (249)
T COG1134         200 IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDL  242 (249)
T ss_pred             EEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHhh
Confidence            999999999988888887655542      5666666665543

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.60  E-value=1.1e-07  Score=86.21  Aligned_cols=137  Identities=20%  Similarity=0.315  Sum_probs=84.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh----h-c--CCCe----------------EEEEEeCCCCC
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE----K-K--MFDE----------------VAMAVVSQTPS  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~-~--~f~~----------------~~wv~v~~~~~  221 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+....    . +  .|+.                .....+.|.+.
T Consensus        22 ~l~~vsl~i~~Ge--~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~   99 (330)
T PRK15093         22 AVDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ   99 (330)
T ss_pred             EEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence            4566666666777  9999999999999999999877531    1 1  0100                01122333321


Q ss_pred             --------HH------------------------HHHHHHHHHhCCCCCC--------CCC-HHHHHHHHHHHHccCceE
Q 046889          222 --------IT------------------------KIQDEIAGWLGIKELP--------DND-ELVRASLLCKRIEKQRVL  260 (333)
Q Consensus       222 --------~~------------------------~~~~~i~~~l~~~~~~--------~~~-~~~~~~~l~~~l~~k~~L  260 (333)
                              +.                        ....++++.+++.+..        ..+ .+.....|...|..++-+
T Consensus       100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l  179 (330)
T PRK15093        100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL  179 (330)
T ss_pred             hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence                    00                        1123445555553210        112 334456688888899999


Q ss_pred             EEEeCCCCchh------hhhccCCCCC-CCcEEEEeeCChHHHhhcccce
Q 046889          261 VILDDLWVQIE------LDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       261 lVlDdv~~~~~------~~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      ||+|++.+..|      +..+...... .|..||++||+...+..++++.
T Consensus       180 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri  229 (330)
T PRK15093        180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI  229 (330)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence            99999987644      2222222222 3788999999999987777665

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.60  E-value=9.6e-08  Score=83.67  Aligned_cols=144  Identities=17%  Similarity=0.270  Sum_probs=85.5

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc------C---C--------C----eEEEEEeCC
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK------M---F--------D----EVAMAVVSQ  218 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~------~---f--------~----~~~wv~v~~  218 (333)
                      +|....++.+...+.+++  +++|+|++|+|||||++.+.+...+..      .   |        .    .....++++
T Consensus        20 ~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q   97 (257)
T PRK14246         20 INDKAILKDITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQ   97 (257)
T ss_pred             cCCceeEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEcc
Confidence            344456666666666777  999999999999999999997654321      0   0        0    001122333


Q ss_pred             CC------CHHH-------------------HHHHHHHHhCCCC----C-----CCCC-HHHHHHHHHHHHccCceEEEE
Q 046889          219 TP------SITK-------------------IQDEIAGWLGIKE----L-----PDND-ELVRASLLCKRIEKQRVLVIL  263 (333)
Q Consensus       219 ~~------~~~~-------------------~~~~i~~~l~~~~----~-----~~~~-~~~~~~~l~~~l~~k~~LlVl  263 (333)
                      .+      +..+                   ....+++.+++..    .     ...+ .+.....+.+.+..++-+++|
T Consensus        98 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llll  177 (257)
T PRK14246         98 QPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLM  177 (257)
T ss_pred             CCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            21      1110                   1122334444421    0     1111 234456688888889999999


Q ss_pred             eCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          264 DDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       264 Ddv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      |++.+..|..      .+..... .++.||++||+...+..++++.+.+
T Consensus       178 DEPt~~LD~~~~~~l~~~l~~~~-~~~tiilvsh~~~~~~~~~d~v~~l  225 (257)
T PRK14246        178 DEPTSMIDIVNSQAIEKLITELK-NEIAIVIVSHNPQQVARVADYVAFL  225 (257)
T ss_pred             cCCCccCCHHHHHHHHHHHHHHh-cCcEEEEEECCHHHHHHhCCEEEEE
Confidence            9998764422      2222222 2578999999999887766666444

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.60  E-value=2.7e-07  Score=91.22  Aligned_cols=144  Identities=16%  Similarity=0.332  Sum_probs=85.6

Q ss_pred             ccccccccchHHHHH---HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC-CCHHHHHHH
Q 046889          153 SEGFYNFKSRESTMK---DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT-PSITKIQDE  228 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~  228 (333)
                      |.....++|.+..+.   .+...+..++...+.++||+|+||||||+.+.+...  .+|     +.+... ....+    
T Consensus        24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f-----~~lna~~~~i~d----   92 (725)
T PRK13341         24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHF-----SSLNAVLAGVKD----   92 (725)
T ss_pred             CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccc-----eeehhhhhhhHH----
Confidence            445567889888774   566666677777789999999999999999997653  233     111110 00010    


Q ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHHH--ccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEE--eeCChH--HHhhcc
Q 046889          229 IAGWLGIKELPDNDELVRASLLCKRI--EKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLL--TSRSRA--ACNQMQ  300 (333)
Q Consensus       229 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~viv--TTr~~~--v~~~~~  300 (333)
                                    ...........+  .+++.+|+|||++..  .....+ ++.-..|+.+++  ||.+..  +...+.
T Consensus        93 --------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaL-L~~lE~g~IiLI~aTTenp~~~l~~aL~  157 (725)
T PRK13341         93 --------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDAL-LPWVENGTITLIGATTENPYFEVNKALV  157 (725)
T ss_pred             --------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHH-HHHhcCceEEEEEecCCChHhhhhhHhh
Confidence                          111111122222  235679999999743  334444 333334554554  344542  222222


Q ss_pred             c--ceEecCCCCHHHHHHHHHhhc
Q 046889          301 A--HIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       301 ~--~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      +  ..+.+++|+.++...++.+.+
T Consensus       158 SR~~v~~l~pLs~edi~~IL~~~l  181 (725)
T PRK13341        158 SRSRLFRLKSLSDEDLHQLLKRAL  181 (725)
T ss_pred             ccccceecCCCCHHHHHHHHHHHH
Confidence            2  238999999999999998765

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=4e-08  Score=86.86  Aligned_cols=136  Identities=17%  Similarity=0.230  Sum_probs=80.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCCC-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTPS-------  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~~-------  221 (333)
                      .++.+...+..|+  +++|+|+||+|||||++.+++..++...   ++.             .....+++.+.       
T Consensus        17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t   94 (274)
T PRK13644         17 ALENINLVIKKGE--YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT   94 (274)
T ss_pred             eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence            4555666666777  9999999999999999999977543211   000             00111222210       


Q ss_pred             H------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------
Q 046889          222 I------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------  271 (333)
Q Consensus       222 ~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------  271 (333)
                      .                  ......+++.+++...     ...+ .+.....+.+.+..++-+++||++.+..|      
T Consensus        95 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~  174 (274)
T PRK13644         95 VEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA  174 (274)
T ss_pred             HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            0                  1112334444554311     1122 34445668888889999999999987644      


Q ss_pred             hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          272 LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       272 ~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      +..+.......|..||++||+.+.+. .+++.
T Consensus       175 l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v  205 (274)
T PRK13644        175 VLERIKKLHEKGKTIVYITHNLEELH-DADRI  205 (274)
T ss_pred             HHHHHHHHHhCCCEEEEEecCHHHHh-hCCEE
Confidence            22222222334788999999999875 35554

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.60  E-value=1.5e-07  Score=82.36  Aligned_cols=140  Identities=11%  Similarity=0.190  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------cC--CCe--------------EEEEEeCCCC-
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------KM--FDE--------------VAMAVVSQTP-  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~~--f~~--------------~~wv~v~~~~-  220 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+.      +.  ++.              .....+++.+ 
T Consensus        18 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~   95 (253)
T PRK14267         18 HVIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN   95 (253)
T ss_pred             eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence            45666666677777  99999999999999999998775421      10  000              0011222221 


Q ss_pred             -----CHHH--------------------HHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeC
Q 046889          221 -----SITK--------------------IQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       221 -----~~~~--------------------~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                           +..+                    ....+++.+++..         ....+ .+.....+.+.+..++-+++||+
T Consensus        96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  175 (253)
T PRK14267         96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE  175 (253)
T ss_pred             cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence                 1110                    1122333333310         01111 23345567788888999999999


Q ss_pred             CCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          266 LWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       266 v~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.+..|      +..+...... +..||++||+......++++.+.+
T Consensus       176 P~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l  221 (253)
T PRK14267        176 PTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFL  221 (253)
T ss_pred             CCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEE
Confidence            987644      2222222222 567999999999877766666444

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.60  E-value=6.5e-08  Score=95.50  Aligned_cols=145  Identities=17%  Similarity=0.139  Sum_probs=86.3

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCC-------CHHH----
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTP-------SITK----  224 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~-------~~~~----  224 (333)
                      +|....++.+...+..++  +++|+|+||+|||||++.+++...+...   +.. ....++++..       ++.+    
T Consensus       329 ~~~~~il~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~  406 (635)
T PRK11147        329 IDGKQLVKDFSAQVQRGD--KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAE  406 (635)
T ss_pred             ECCeEEEcCcEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHh
Confidence            344446667766666777  9999999999999999999987543221   111 1122333321       1111    


Q ss_pred             ------------HHHHHHHHhCCCC------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cCCCCCC
Q 046889          225 ------------IQDEIAGWLGIKE------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GIPYGND  282 (333)
Q Consensus       225 ------------~~~~i~~~l~~~~------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~~~~~  282 (333)
                                  -...++..++...      ....+ .+...-.+...+..++-+|+||++.+..|....   .-.+...
T Consensus       407 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~  486 (635)
T PRK11147        407 GKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY  486 (635)
T ss_pred             hcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC
Confidence                        1123344444421      01112 233455677888889999999999988653322   1111111


Q ss_pred             CcEEEEeeCChHHHhhcccceEec
Q 046889          283 GCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       283 g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..||++||+...+..+++..+.+
T Consensus       487 ~~tvi~vSHd~~~~~~~~d~i~~l  510 (635)
T PRK11147        487 QGTVLLVSHDRQFVDNTVTECWIF  510 (635)
T ss_pred             CCeEEEEECCHHHHHHhcCEEEEE
Confidence            346999999999988877776555

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.60  E-value=1.2e-07  Score=83.18  Aligned_cols=138  Identities=18%  Similarity=0.314  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-hhc-------CCCeE----------------EEEEeCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-EKK-------MFDEV----------------AMAVVSQT  219 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~-------~f~~~----------------~wv~v~~~  219 (333)
                      ..++.+...+..++  +++|+|.+|+||||+++.+..... ...       .|+..                -...+.|+
T Consensus        19 ~av~~vs~~i~~GE--~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~   96 (316)
T COG0444          19 KAVDGVSFELKKGE--ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD   96 (316)
T ss_pred             EEEeceeEEEcCCc--EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence            35556666677778  999999999999999999998764 111       12111                11233343


Q ss_pred             C----C----H--------------------HHHHHHHHHHhCCCCC---------CCCCHHHHHHHHHHHHccCceEEE
Q 046889          220 P----S----I--------------------TKIQDEIAGWLGIKEL---------PDNDELVRASLLCKRIEKQRVLVI  262 (333)
Q Consensus       220 ~----~----~--------------------~~~~~~i~~~l~~~~~---------~~~~~~~~~~~l~~~l~~k~~LlV  262 (333)
                      +    +    +                    .+...++++.+++++.         .-+.-..++..+.-.+..++-|||
T Consensus        97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI  176 (316)
T COG0444          97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI  176 (316)
T ss_pred             chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence            2    1    0                    1122334455555321         111233455677888888999999


Q ss_pred             EeCCCCchh------hhhccCCC-CCCCcEEEEeeCChHHHhhcccce
Q 046889          263 LDDLWVQIE------LDRVGIPY-GNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       263 lDdv~~~~~------~~~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      .|++.+..|      .-.+.-.+ ...|+.+|++|||..++..++++.
T Consensus       177 ADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri  224 (316)
T COG0444         177 ADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRV  224 (316)
T ss_pred             eCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceE
Confidence            999987754      12221111 245899999999999988888766

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.60  E-value=2.2e-07  Score=81.29  Aligned_cols=140  Identities=10%  Similarity=0.197  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-----h-hcC--CC--------------eEEEEEeCCCC-
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-----E-KKM--FD--------------EVAMAVVSQTP-  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-----~-~~~--f~--------------~~~wv~v~~~~-  220 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...     + .+.  ++              .....++++.+ 
T Consensus        20 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~   97 (253)
T PRK14242         20 QALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN   97 (253)
T ss_pred             eeecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence            45666666667777  999999999999999999987532     0 110  00              00122233332 


Q ss_pred             ----CHHH-------------------HHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          221 ----SITK-------------------IQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       221 ----~~~~-------------------~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                          +..+                   ....+++.+++..         ....+ .+...-.+.+.+..++-+++||++.
T Consensus        98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt  177 (253)
T PRK14242         98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA  177 (253)
T ss_pred             CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                1111                   1112233333311         11122 2344556788888899999999998


Q ss_pred             Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|      +..+...... +..||++||+...+..++++.+.+
T Consensus       178 ~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l  221 (253)
T PRK14242        178 SALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFF  221 (253)
T ss_pred             ccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEE
Confidence            7644      2222222222 568999999999877766766444

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.59  E-value=3e-07  Score=73.09  Aligned_cols=127  Identities=11%  Similarity=0.171  Sum_probs=83.5

Q ss_pred             hcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-------------------CCC--eEEEEE-----eCC---------
Q 046889          174 KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-------------------MFD--EVAMAV-----VSQ---------  218 (333)
Q Consensus       174 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~--~~~wv~-----v~~---------  218 (333)
                      ..++  .++|+|++|+|||||.....+-....+                   .|.  .+-+|.     ++.         
T Consensus        34 ~~Ge--~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l  111 (228)
T COG4181          34 KRGE--TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL  111 (228)
T ss_pred             cCCc--eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence            3455  799999999999999988875433211                   110  111111     111         


Q ss_pred             --------CCCHHHHHHHHHHHhCCCCC------CCCCHHHHHHHHHHHHccCceEEEEeCCCCc------hhhhhccCC
Q 046889          219 --------TPSITKIQDEIAGWLGIKEL------PDNDELVRASLLCKRIEKQRVLVILDDLWVQ------IELDRVGIP  278 (333)
Q Consensus       219 --------~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~  278 (333)
                              ..+.....+..+.++|+...      .-..-+++.-.|.+.+...+-+|+-|++.-.      ....++.+.
T Consensus       112 PleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~  191 (228)
T COG4181         112 PLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFA  191 (228)
T ss_pred             hhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHH
Confidence                    11334556778888887522      1123456677899999999999999998744      335555555


Q ss_pred             CC-CCCcEEEEeeCChHHHhhcccc
Q 046889          279 YG-NDGCKFLLTSRSRAACNQMQAH  302 (333)
Q Consensus       279 ~~-~~g~~vivTTr~~~v~~~~~~~  302 (333)
                      .. ..|+..+++||++.++.+|...
T Consensus       192 lnre~G~TlVlVTHD~~LA~Rc~R~  216 (228)
T COG4181         192 LNRERGTTLVLVTHDPQLAARCDRQ  216 (228)
T ss_pred             HhhhcCceEEEEeCCHHHHHhhhhe
Confidence            43 4499999999999999887543

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.59  E-value=1.2e-07  Score=81.14  Aligned_cols=139  Identities=14%  Similarity=0.197  Sum_probs=80.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-----HH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-----IT-  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-----~~-  223 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   |..            .....+++.+.     .. 
T Consensus        19 ~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e   96 (220)
T cd03245          19 ALDNVSLTIRAGE--KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD   96 (220)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence            5556665566777  9999999999999999999976542210   000            00112233221     10 


Q ss_pred             -----------HHHHHHHHHhCCCC----C------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889          224 -----------KIQDEIAGWLGIKE----L------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---  272 (333)
Q Consensus       224 -----------~~~~~i~~~l~~~~----~------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---  272 (333)
                                 .....++..+++..    .            ...+ .+.....+.+.+..++-+++||++.+..|.   
T Consensus        97 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~  176 (220)
T cd03245          97 NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE  176 (220)
T ss_pred             HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence                       11122333333320    0            1222 234456677888888999999999876442   


Q ss_pred             ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                         ..+...... +..||++||+.... .++++.+.+.
T Consensus       177 ~~l~~~l~~~~~-~~tii~~sH~~~~~-~~~d~v~~l~  212 (220)
T cd03245         177 ERLKERLRQLLG-DKTLIIITHRPSLL-DLVDRIIVMD  212 (220)
T ss_pred             HHHHHHHHHhcC-CCEEEEEeCCHHHH-HhCCEEEEEe
Confidence               222222223 36799999999876 4666655443

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.59  E-value=6.7e-07  Score=76.74  Aligned_cols=134  Identities=16%  Similarity=0.223  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC
Q 046889          162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN  241 (333)
Q Consensus       162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~  241 (333)
                      ....++.+..++.......+.|+|+.|+|||+||+.+++.....  ....+++.++.-.      ...            
T Consensus        22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~------~~~------------   81 (226)
T TIGR03420        22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELA------QAD------------   81 (226)
T ss_pred             cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHH------HhH------------
Confidence            45577777777655555689999999999999999999876532  2233444332211      000            


Q ss_pred             CHHHHHHHHHHHHccCceEEEEeCCCCch---hh-hhcc---CCCCCCCcEEEEeeCChH---------HHhhcc-cceE
Q 046889          242 DELVRASLLCKRIEKQRVLVILDDLWVQI---EL-DRVG---IPYGNDGCKFLLTSRSRA---------ACNQMQ-AHIV  304 (333)
Q Consensus       242 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~l~---~~~~~~g~~vivTTr~~~---------v~~~~~-~~~~  304 (333)
                            ..+...+. +..+||+||+....   .| ..+.   ......+..+|+||+...         +...+. ...+
T Consensus        82 ------~~~~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i  154 (226)
T TIGR03420        82 ------PEVLEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF  154 (226)
T ss_pred             ------HHHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence                  01111222 23489999997542   11 1121   111123457888887432         222333 2348


Q ss_pred             ecCCCCHHHHHHHHHhhc
Q 046889          305 DVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       305 ~l~~L~~~e~~~lf~~~a  322 (333)
                      .+.++++++...++.+.+
T Consensus       155 ~l~~l~~~e~~~~l~~~~  172 (226)
T TIGR03420       155 QLPPLSDEEKIAALQSRA  172 (226)
T ss_pred             ecCCCCHHHHHHHHHHHH
Confidence            999999999999988653

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.59  E-value=9.4e-08  Score=84.17  Aligned_cols=140  Identities=15%  Similarity=0.284  Sum_probs=84.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++               .....++++.+      
T Consensus        26 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~  103 (265)
T TIGR02769        26 VLTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP  103 (265)
T ss_pred             EeeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence            4566666667788  9999999999999999999877543210   00               00011222221      


Q ss_pred             --CHH-------------------HHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 --SIT-------------------KIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 --~~~-------------------~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                        +..                   .....+++.+++. ....     .+ .+.....+.+.+..++-+++||++.+..|.
T Consensus       104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~  183 (265)
T TIGR02769       104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM  183 (265)
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence              111                   1123445555552 1111     11 234456688888889999999999876542


Q ss_pred             h------hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          273 D------RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~------~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .      .+...... .|..||++||+...+..++++.+.+
T Consensus       184 ~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l  224 (265)
T TIGR02769       184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVM  224 (265)
T ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEE
Confidence            2      22222222 3778999999999887766665433

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=6.3e-08  Score=85.95  Aligned_cols=137  Identities=17%  Similarity=0.212  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-------------eEEEEEeCCCCC-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-------------EVAMAVVSQTPS-------  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-------------~~~wv~v~~~~~-------  221 (333)
                      .++.+...+..|+  +++|+|++|+|||||++.+.+...+...   ++             ......+++.+.       
T Consensus        25 vl~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~  102 (280)
T PRK13633         25 ALDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI  102 (280)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence            5566666666777  9999999999999999999876543210   00             000112222210       


Q ss_pred             H------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------
Q 046889          222 I------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------  271 (333)
Q Consensus       222 ~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------  271 (333)
                      .                  ......+++.+++...     ...+ .+.....|...|..++-+++||++.+..|      
T Consensus       103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~  182 (280)
T PRK13633        103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE  182 (280)
T ss_pred             HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            0                  1122344445554321     1112 33445668888889999999999987644      


Q ss_pred             hhhccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889          272 LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       272 ~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      +..+..... ..|..||++||+.+.+.. +++.+
T Consensus       183 l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~  215 (280)
T PRK13633        183 VVNTIKELNKKYGITIILITHYMEEAVE-ADRII  215 (280)
T ss_pred             HHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEE
Confidence            222222222 247889999999998765 45443

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=1.7e-07  Score=81.95  Aligned_cols=141  Identities=11%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------cC--CCe--------------EEEEEeCCCC
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------KM--FDE--------------VAMAVVSQTP  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~~--f~~--------------~~wv~v~~~~  220 (333)
                      ...++.+...+..++  +++|+|++|+|||||++.+.+.....      +.  ++.              ....++++.+
T Consensus        20 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~   97 (254)
T PRK14273         20 FKALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTP   97 (254)
T ss_pred             ceeecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecc
Confidence            346677777777788  99999999999999999998765421      10  000              0012223322


Q ss_pred             C-----HH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889          221 S-----IT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDL  266 (333)
Q Consensus       221 ~-----~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv  266 (333)
                      .     ..                   .....+++.++..         .....+ .+.....+.+.|..++-+++||++
T Consensus        98 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP  177 (254)
T PRK14273         98 NPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP  177 (254)
T ss_pred             ccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            1     11                   1112222333320         011112 234455677888888899999999


Q ss_pred             CCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          267 WVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       267 ~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+..|      +..+..... .+..||++||+...+..++++.+.|
T Consensus       178 t~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l  222 (254)
T PRK14273        178 TSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFF  222 (254)
T ss_pred             CcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            87644      222222222 3578999999999887777766444

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=2.9e-07  Score=82.13  Aligned_cols=140  Identities=12%  Similarity=0.177  Sum_probs=82.2

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------------EEEEEeCCCCC--H
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------------VAMAVVSQTPS--I  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------------~~wv~v~~~~~--~  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.                 ....++++.+.  .
T Consensus        26 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~  103 (289)
T PRK13645         26 ALNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL  103 (289)
T ss_pred             eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence            4555665566777  9999999999999999999876543210   000                 01122333320  0


Q ss_pred             --HHH---------------------HHHHHHHhCCC-CCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          223 --TKI---------------------QDEIAGWLGIK-ELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       223 --~~~---------------------~~~i~~~l~~~-~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                        ..+                     ...+++.+++. ...     ..+ .+.....+.+.|..++-+++||++.+..|.
T Consensus       104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~  183 (289)
T PRK13645        104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP  183 (289)
T ss_pred             hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence              011                     12334444442 111     112 233455677888888999999999876442


Q ss_pred             h------hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 D------RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~------~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .      .+..... ..|..||++||+.+.+..++++.+.+
T Consensus       184 ~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l  224 (289)
T PRK13645        184 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM  224 (289)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            2      2212222 23778999999999877766666444

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=8.8e-08  Score=86.70  Aligned_cols=137  Identities=16%  Similarity=0.267  Sum_probs=84.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh----h-c--CCCe----------------EEEEEeCCCC-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE----K-K--MFDE----------------VAMAVVSQTP-  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~-~--~f~~----------------~~wv~v~~~~-  220 (333)
                      .++++...+..++  +++|+|++|+|||||++.+.+....    . +  .|+.                .....+.|.+ 
T Consensus        22 ~l~~vsl~i~~Ge--~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~   99 (326)
T PRK11022         22 AVDRISYSVKQGE--VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM   99 (326)
T ss_pred             EEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence            4566666667787  9999999999999999999987541    1 0  0100                0112233332 


Q ss_pred             -------CHH-------------------HHHHHHHHHhCCCCC--------CCCC-HHHHHHHHHHHHccCceEEEEeC
Q 046889          221 -------SIT-------------------KIQDEIAGWLGIKEL--------PDND-ELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       221 -------~~~-------------------~~~~~i~~~l~~~~~--------~~~~-~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                             ...                   ....++++.+++.+.        ...+ .+.+...|...|..++-+||+|+
T Consensus       100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE  179 (326)
T PRK11022        100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE  179 (326)
T ss_pred             hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence                   111                   112344555565321        1111 23445668888888999999999


Q ss_pred             CCCchh------hhhccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889          266 LWVQIE------LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       266 v~~~~~------~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      +.+..|      +..+..... ..|..||++||+...+..++++.
T Consensus       180 Pts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri  224 (326)
T PRK11022        180 PTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKI  224 (326)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence            987754      222222222 24778999999999887777766

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.58  E-value=1.6e-07  Score=90.28  Aligned_cols=142  Identities=16%  Similarity=0.255  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh--hc--CCCe-------------EEEEEeCCCC-----
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE--KK--MFDE-------------VAMAVVSQTP-----  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~--~f~~-------------~~wv~v~~~~-----  220 (333)
                      ...++.+...+..++  +++|+|+||+|||||++.+.+..++  .+  .|..             .....+++.+     
T Consensus       273 ~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l  350 (500)
T TIGR02633       273 RKRVDDVSFSLRRGE--ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGI  350 (500)
T ss_pred             ccccccceeEEeCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCc
Confidence            346777777777777  9999999999999999999876541  11  0000             0001111110     


Q ss_pred             ------------------------C---HHHHHHHHHHHhCCCC-CCC-----CC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889          221 ------------------------S---ITKIQDEIAGWLGIKE-LPD-----ND-ELVRASLLCKRIEKQRVLVILDDL  266 (333)
Q Consensus       221 ------------------------~---~~~~~~~i~~~l~~~~-~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv  266 (333)
                                              .   .......+++.+++.. ...     .+ -+.....+.+.+..++-+++||++
T Consensus       351 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP  430 (500)
T TIGR02633       351 VPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEP  430 (500)
T ss_pred             CCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence                                    0   0112345666676631 111     12 344566788888889999999999


Q ss_pred             CCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          267 WVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       267 ~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+..|...      +.......|..||++||+.+.+..++++.+.+
T Consensus       431 t~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l  476 (500)
T TIGR02633       431 TRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVI  476 (500)
T ss_pred             CCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            87755322      21222334777999999999887777766443

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.58  E-value=1.2e-06  Score=79.94  Aligned_cols=168  Identities=14%  Similarity=0.200  Sum_probs=89.5

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC-eEEEEEeCCCCCH-HHHH-H--
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD-EVAMAVVSQTPSI-TKIQ-D--  227 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~-~~~~-~--  227 (333)
                      |.....++|++..++.|..++..+..+.+.++||.|+||||+|+.+.+..... .+. ..+.+.++..... ...+ .  
T Consensus        11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~   89 (337)
T PRK12402         11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDP   89 (337)
T ss_pred             CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCc
Confidence            44456788999999999999888776678899999999999999998776421 221 1223332211000 0000 0  


Q ss_pred             HHHHHhCCCCCCCCCHHHHHHHHH-HH---H--ccCceEEEEeCCCCch--h---hhhccCCCCCCCcEEEEeeCChH-H
Q 046889          228 EIAGWLGIKELPDNDELVRASLLC-KR---I--EKQRVLVILDDLWVQI--E---LDRVGIPYGNDGCKFLLTSRSRA-A  295 (333)
Q Consensus       228 ~i~~~l~~~~~~~~~~~~~~~~l~-~~---l--~~k~~LlVlDdv~~~~--~---~~~l~~~~~~~g~~vivTTr~~~-v  295 (333)
                      .....++...............+. ..   .  ...+.+||+||+....  .   +..+ +......+++|+||.+.. +
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~-le~~~~~~~~Il~~~~~~~~  168 (337)
T PRK12402         90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRI-MEQYSRTCRFIIATRQPSKL  168 (337)
T ss_pred             chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHH-HHhccCCCeEEEEeCChhhC
Confidence            000000000000000111111111 11   1  1345689999986442  1   2222 111223567777776543 2


Q ss_pred             Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+..+  .+.+.+++.++...++.+.+
T Consensus       169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~  197 (337)
T PRK12402        169 IPPIRSRCLPLFFRAPTDDELVDVLESIA  197 (337)
T ss_pred             chhhcCCceEEEecCCCHHHHHHHHHHHH
Confidence            2223333  28889999999888888764

>PLN03211 ABC transporter G-25; Provisional

Probab=98.58  E-value=1.2e-07  Score=93.67  Aligned_cols=163  Identities=12%  Similarity=0.153  Sum_probs=95.9

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh---cC--CCe--------EEEEEeCCCC------C
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK---KM--FDE--------VAMAVVSQTP------S  221 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~--f~~--------~~wv~v~~~~------~  221 (333)
                      +....++++...+.+|+  +++|+|++|+|||||++.+.+..+..   +.  ++.        ....++.|..      +
T Consensus        79 ~~~~iL~~vs~~i~~Ge--~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lT  156 (659)
T PLN03211         79 QERTILNGVTGMASPGE--ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT  156 (659)
T ss_pred             CCCeeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCC
Confidence            33445556655566667  99999999999999999999875431   10  000        0012233321      1


Q ss_pred             H---------------------HHHHHHHHHHhCCCCCC----------CCC-HHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889          222 I---------------------TKIQDEIAGWLGIKELP----------DND-ELVRASLLCKRIEKQRVLVILDDLWVQ  269 (333)
Q Consensus       222 ~---------------------~~~~~~i~~~l~~~~~~----------~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~  269 (333)
                      +                     ......+++.+++....          ..+ .+..+-.+...|..++-+++||++.+.
T Consensus       157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg  236 (659)
T PLN03211        157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG  236 (659)
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence            1                     11234456666664211          112 344556678888888999999999877


Q ss_pred             hh------hhhccCCCCCCCcEEEEeeCChHH-HhhcccceEecC------CCCHHHHHHHHHhhcccC
Q 046889          270 IE------LDRVGIPYGNDGCKFLLTSRSRAA-CNQMQAHIVDVR------TLTEEESWRSAEGKRRVC  325 (333)
Q Consensus       270 ~~------~~~l~~~~~~~g~~vivTTr~~~v-~~~~~~~~~~l~------~L~~~e~~~lf~~~a~~~  325 (333)
                      .|      +..+.......|..||+|||+... ...+.+..+.|.      .-+.++....|....+.+
T Consensus       237 LD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~  305 (659)
T PLN03211        237 LDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSP  305 (659)
T ss_pred             cCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCC
Confidence            54      222222223347889999999862 334444443332      235688888888775543

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.58  E-value=1.3e-07  Score=81.27  Aligned_cols=141  Identities=16%  Similarity=0.223  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH---hhcC---CC---------eEEEEEeCCCC------CH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK---EKKM---FD---------EVAMAVVSQTP------SI  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~---~~~~---f~---------~~~wv~v~~~~------~~  222 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...   +...   ++         ......+++.+      +.
T Consensus        21 ~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv   98 (226)
T cd03234          21 RILNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV   98 (226)
T ss_pred             ccccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence            34555555556676  999999999999999999987764   2210   00         00112233322      11


Q ss_pred             HHH---------------------HHH-HHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889          223 TKI---------------------QDE-IAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---  271 (333)
Q Consensus       223 ~~~---------------------~~~-i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---  271 (333)
                      .+.                     ... +++.++....     ...+ .+...-.+.+.+...+-+++||++.+..|   
T Consensus        99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~  178 (226)
T cd03234          99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT  178 (226)
T ss_pred             HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHH
Confidence            110                     011 3333333211     1112 23344557778888889999999987644   


Q ss_pred             ---hhhccCCCCCCCcEEEEeeCCh-HHHhhcccceEec
Q 046889          272 ---LDRVGIPYGNDGCKFLLTSRSR-AACNQMQAHIVDV  306 (333)
Q Consensus       272 ---~~~l~~~~~~~g~~vivTTr~~-~v~~~~~~~~~~l  306 (333)
                         +..+.......|..||++||+. ..+..++++.+.+
T Consensus       179 ~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l  217 (226)
T cd03234         179 ALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL  217 (226)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence               2222222223377899999997 4555566665444

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.57  E-value=1.4e-06  Score=85.22  Aligned_cols=170  Identities=18%  Similarity=0.144  Sum_probs=98.0

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC---eEEEEEeCCC---CCHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD---EVAMAVVSQT---PSITKIQ  226 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~---~~~wv~v~~~---~~~~~~~  226 (333)
                      |.....++|++..+..+...+.......+.|+|++|+||||||+.+++.......+.   ...|+.+...   .+...+.
T Consensus       150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~  229 (615)
T TIGR02903       150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT  229 (615)
T ss_pred             cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence            334556889999988888877666566899999999999999999998775433331   2234444321   1111111


Q ss_pred             ---------------HHHHHHhCCC------------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hh
Q 046889          227 ---------------DEIAGWLGIK------------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IE  271 (333)
Q Consensus       227 ---------------~~i~~~l~~~------------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~  271 (333)
                                     +..+...+..                  ..... ....+..+.+.+.+++++++-|+.|..  ..
T Consensus       230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~  308 (615)
T TIGR02903       230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV  308 (615)
T ss_pred             HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence                           1112222221                  10111 123567788888888888886655543  22


Q ss_pred             hhhccCCC--CCCCcEEEE--eeCChHH-Hhhcccc--eEecCCCCHHHHHHHHHhhcc
Q 046889          272 LDRVGIPY--GNDGCKFLL--TSRSRAA-CNQMQAH--IVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       272 ~~~l~~~~--~~~g~~viv--TTr~~~v-~~~~~~~--~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      |..+...+  ......+++  ||++... ...+..+  .+.+.+++.++.+.++.+.+-
T Consensus       309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~  367 (615)
T TIGR02903       309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE  367 (615)
T ss_pred             chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence            43332222  222333444  5554432 1122222  378899999999999998753

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.57  E-value=8.5e-08  Score=84.89  Aligned_cols=144  Identities=10%  Similarity=0.169  Sum_probs=84.5

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC-------------eEEEEEeCC
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD-------------EVAMAVVSQ  218 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~-------------~~~wv~v~~  218 (333)
                      ++....++.+...+.+++  +++|+|++|+|||||++.+.+...+      .+.  ++             .....++++
T Consensus        31 ~~~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q  108 (276)
T PRK14271         31 FAGKTVLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQ  108 (276)
T ss_pred             ECCEEEeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEecc
Confidence            344456677777777778  9999999999999999999976542      110  00             001122333


Q ss_pred             CCC-----HHH-------------------HHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEe
Q 046889          219 TPS-----ITK-------------------IQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILD  264 (333)
Q Consensus       219 ~~~-----~~~-------------------~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlD  264 (333)
                      .+.     ..+                   ...++++.+++..         ....+ .+.....|.+.+...+-+++||
T Consensus       109 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLD  188 (276)
T PRK14271        109 RPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD  188 (276)
T ss_pred             CCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            221     110                   0122334444421         01112 3344556788888888999999


Q ss_pred             CCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          265 DLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       265 dv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ++.+..+..      .+...... +..||++||+......++++.+.+
T Consensus       189 EPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l  235 (276)
T PRK14271        189 EPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALF  235 (276)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence            998764422      22222222 468999999999877766665433

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.57  E-value=1.2e-08  Score=85.71  Aligned_cols=148  Identities=20%  Similarity=0.254  Sum_probs=92.4

Q ss_pred             cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-------------------------CCCeEE
Q 046889          158 NFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-------------------------MFDEVA  212 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------------~f~~~~  212 (333)
                      ..||.-..++++...+..++  +++|+||||+|||||.+.+.+..++..                         .|+...
T Consensus        12 k~FGGl~Al~~Vsl~v~~Ge--i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r   89 (250)
T COG0411          12 KRFGGLTAVNDVSLEVRPGE--IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR   89 (250)
T ss_pred             eecCCEEEEeceeEEEcCCe--EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc
Confidence            34454455556666666677  999999999999999999987665432                         111110


Q ss_pred             -------------------------EEEeC--CCCCHHHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCce
Q 046889          213 -------------------------MAVVS--QTPSITKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRV  259 (333)
Q Consensus       213 -------------------------wv~v~--~~~~~~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~  259 (333)
                                               |....  ......+-...+++.+++......     + .++..-.|.+.|..++-
T Consensus        90 lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~  169 (250)
T COG0411          90 LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPK  169 (250)
T ss_pred             ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCC
Confidence                                     00000  000112233455666666522221     1 34456678999999999


Q ss_pred             EEEEeCCCCc------hhhhhccCCCCC-CCcEEEEeeCChHHHhhcccceEecC
Q 046889          260 LVILDDLWVQ------IELDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       260 LlVlDdv~~~------~~~~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      ||+||++-..      .++..+...... .|..|+++-|+..+.-.++++.+.|.
T Consensus       170 lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~  224 (250)
T COG0411         170 LLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN  224 (250)
T ss_pred             EEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEecc
Confidence            9999998633      334444344444 36899999999999888888875553

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.57  E-value=6.1e-08  Score=91.09  Aligned_cols=138  Identities=15%  Similarity=0.257  Sum_probs=87.9

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------------EEEEEeCCCC----
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------------VAMAVVSQTP----  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------------~~wv~v~~~~----  220 (333)
                      ..++++...+..|+  +++|||.+|+|||||++.+.+-..+...   |..                +..+.-.+..    
T Consensus       305 ~Av~~VSf~l~~GE--~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP  382 (539)
T COG1123         305 KAVDDVSFDLREGE--TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP  382 (539)
T ss_pred             eeeeeeeeEecCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence            45667777777788  9999999999999999999977654221   100                0111111100    


Q ss_pred             --CH-------------------HHHHHHHHHHhCCCC-------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-
Q 046889          221 --SI-------------------TKIQDEIAGWLGIKE-------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-  271 (333)
Q Consensus       221 --~~-------------------~~~~~~i~~~l~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-  271 (333)
                        ++                   ......+++..+++.       ..-+.-+.....+.+.|..++.+||+|++.+..| 
T Consensus       383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv  462 (539)
T COG1123         383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV  462 (539)
T ss_pred             cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence              11                   112334455555541       1111234456779999999999999999987754 


Q ss_pred             -----hhhccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889          272 -----LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       272 -----~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                           .-.+...+. ..|..+|++||+..+.+.++++.
T Consensus       463 svqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv  500 (539)
T COG1123         463 SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRV  500 (539)
T ss_pred             HHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceE
Confidence                 222222222 23889999999999999998877

>PRK13409 putative ATPase RIL; Provisional

Probab=98.57  E-value=2.3e-07  Score=90.46  Aligned_cols=146  Identities=18%  Similarity=0.228  Sum_probs=89.3

Q ss_pred             ccccchH-HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh-cC-------------CCe-----------
Q 046889          157 YNFKSRE-STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK-KM-------------FDE-----------  210 (333)
Q Consensus       157 ~~~~gr~-~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~-------------f~~-----------  210 (333)
                      .+-||.. -.+..+. .+..|+  +++|+|+||+|||||++.+.+...+. +.             |..           
T Consensus        80 ~~~yg~~~~~L~~l~-~i~~Ge--v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~  156 (590)
T PRK13409         80 VHRYGVNGFKLYGLP-IPKEGK--VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY  156 (590)
T ss_pred             eEEecCCceeEecCC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence            3445543 3566666 566677  99999999999999999998765432 11             110           


Q ss_pred             -----EEE--EEeCCCC-----CH---------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEE
Q 046889          211 -----VAM--AVVSQTP-----SI---------TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVIL  263 (333)
Q Consensus       211 -----~~w--v~v~~~~-----~~---------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVl  263 (333)
                           ..+  -++.+.+     +.         ......+++.+++....     ..+ .+...-.|...|..++-+++|
T Consensus       157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllL  236 (590)
T PRK13409        157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFF  236 (590)
T ss_pred             ccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence                 000  0111111     11         12234566666664221     122 344456788888899999999


Q ss_pred             eCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          264 DDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       264 Ddv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      |++.+..|..      .+...... |..||++||+...+..+++..+.+
T Consensus       237 DEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl  284 (590)
T PRK13409        237 DEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIA  284 (590)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9998775532      22222234 778999999999988877766444

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.56  E-value=2e-06  Score=83.82  Aligned_cols=165  Identities=17%  Similarity=0.179  Sum_probs=104.4

Q ss_pred             ccccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC-CCHHHHHHHH
Q 046889          151 SLSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT-PSITKIQDEI  229 (333)
Q Consensus       151 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i  229 (333)
                      ..|......+-|....+.|..   ..+.+.+.|..|.|.|||||+-.......   .=..+.|.++.+. .++..+++.+
T Consensus        13 ~~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yL   86 (894)
T COG2909          13 VRPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYL   86 (894)
T ss_pred             CCCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHH
Confidence            334444566777776666554   34678999999999999999999887332   2246789998754 5677788888


Q ss_pred             HHHhCCC--CC-----------CCCCHHHHHHHHHHHHcc--CceEEEEeCCCCch------hhhhccCCCCCCCcEEEE
Q 046889          230 AGWLGIK--EL-----------PDNDELVRASLLCKRIEK--QRVLVILDDLWVQI------ELDRVGIPYGNDGCKFLL  288 (333)
Q Consensus       230 ~~~l~~~--~~-----------~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~------~~~~l~~~~~~~g~~viv  288 (333)
                      +..++.-  ..           ...+...+...+..-|..  +++++||||..-..      .+..+ +.....+-..|+
T Consensus        87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fL-l~~~P~~l~lvv  165 (894)
T COG2909          87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFL-LKHAPENLTLVV  165 (894)
T ss_pred             HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHH-HHhCCCCeEEEE
Confidence            8887632  11           111122333344444443  68899999976432      23333 333334788999


Q ss_pred             eeCChHHHhh----cccceEecC----CCCHHHHHHHHHhhc
Q 046889          289 TSRSRAACNQ----MQAHIVDVR----TLTEEESWRSAEGKR  322 (333)
Q Consensus       289 TTr~~~v~~~----~~~~~~~l~----~L~~~e~~~lf~~~a  322 (333)
                      |||+..-...    +......+.    .|+.+|+.++|....
T Consensus       166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~  207 (894)
T COG2909         166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG  207 (894)
T ss_pred             EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence            9998864221    111113333    488999999999875

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1.5e-07  Score=90.66  Aligned_cols=140  Identities=19%  Similarity=0.244  Sum_probs=85.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe-------------EEEEEeCCCC--------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE-------------VAMAVVSQTP--------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-------------~~wv~v~~~~--------  220 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+..++..   .|+.             ....++++.+        
T Consensus       278 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  355 (510)
T PRK09700        278 KVRDISFSVCRGE--ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN  355 (510)
T ss_pred             cccceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence            5666666666677  999999999999999999986643211   0000             0011222210        


Q ss_pred             -CH---------------------------HHHHHHHHHHhCCC-CCCCC-----C-HHHHHHHHHHHHccCceEEEEeC
Q 046889          221 -SI---------------------------TKIQDEIAGWLGIK-ELPDN-----D-ELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       221 -~~---------------------------~~~~~~i~~~l~~~-~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                       ++                           ......+++.+++. .....     + -+.....+...|..++-+++||+
T Consensus       356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE  435 (510)
T PRK09700        356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE  435 (510)
T ss_pred             CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence             00                           01234566667663 22111     2 34456678888888999999999


Q ss_pred             CCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          266 LWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       266 v~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.+..|..      .+.......|..||++||+...+..++++.+.+
T Consensus       436 Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l  482 (510)
T PRK09700        436 PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVF  482 (510)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence            98775522      222222234778999999998877777766444

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.56  E-value=2.1e-07  Score=89.45  Aligned_cols=140  Identities=17%  Similarity=0.247  Sum_probs=85.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCC--------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTP--------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~--------  220 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+..++...   ++.             ....++++.+        
T Consensus       268 ~l~~isl~i~~Ge--~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~  345 (501)
T PRK11288        268 LREPISFSVRAGE--IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV  345 (501)
T ss_pred             cccceeEEEeCCc--EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence            4566665566677  9999999999999999999866432110   000             0011111110        


Q ss_pred             -CH------------------------HHHHHHHHHHhCCC-CCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          221 -SI------------------------TKIQDEIAGWLGIK-ELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       221 -~~------------------------~~~~~~i~~~l~~~-~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                       +.                        ......++..+++. ...     ..+ -+...-.+...+..++-+|+||++.+
T Consensus       346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~  425 (501)
T PRK11288        346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR  425 (501)
T ss_pred             CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence             00                        11234566666662 111     112 34456678888888999999999988


Q ss_pred             chhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          269 QIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       269 ~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|...      +.......|..||++||+.+.+..+++..+.+
T Consensus       426 ~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l  469 (501)
T PRK11288        426 GIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVM  469 (501)
T ss_pred             CCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEE
Confidence            755322      22222334778999999999988877776444

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1.6e-07  Score=82.86  Aligned_cols=143  Identities=10%  Similarity=0.218  Sum_probs=81.8

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-----h-hcC--CC--------------eEEEEEeCC
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-----E-KKM--FD--------------EVAMAVVSQ  218 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-----~-~~~--f~--------------~~~wv~v~~  218 (333)
                      +....++.+...+..|+  +++|+|++|+|||||++.+.+...     + .+.  +.              .....++++
T Consensus        32 ~~~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q  109 (268)
T PRK14248         32 GEKRAVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQ  109 (268)
T ss_pred             CCceeeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEec
Confidence            43446667776677788  999999999999999999987532     1 110  00              001122333


Q ss_pred             CCCH--HHH----------------------HHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEe
Q 046889          219 TPSI--TKI----------------------QDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILD  264 (333)
Q Consensus       219 ~~~~--~~~----------------------~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlD  264 (333)
                      .+..  ..+                      ....+..++..         .....+ .+...-.+.+.+..++-+++||
T Consensus       110 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD  189 (268)
T PRK14248        110 KPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD  189 (268)
T ss_pred             CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence            3210  011                      11222223321         011112 2334556778888888999999


Q ss_pred             CCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          265 DLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       265 dv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ++.+..|      +..+...... +..||++||+...+..++++.+.|
T Consensus       190 EPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l  236 (268)
T PRK14248        190 EPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFF  236 (268)
T ss_pred             CCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEE
Confidence            9987644      2222222222 567999999999877766666444

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=6.5e-08  Score=85.44  Aligned_cols=137  Identities=12%  Similarity=0.270  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------C----eEEEEEeCCCC-------C
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------D----EVAMAVVSQTP-------S  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~----~~~wv~v~~~~-------~  221 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+...   +        .    .....++++.+       +
T Consensus        23 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t  100 (271)
T PRK13632         23 NALKNVSFEINEGE--YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT  100 (271)
T ss_pred             cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence            34566666666777  9999999999999999999977543210   0        0    00011222221       1


Q ss_pred             HH------------------HHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh----
Q 046889          222 IT------------------KIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD----  273 (333)
Q Consensus       222 ~~------------------~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----  273 (333)
                      ..                  .....+++.+++..     ....+ .+.....+.+.|..++-+++||++.+..|..    
T Consensus       101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~  180 (271)
T PRK13632        101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE  180 (271)
T ss_pred             HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            10                  11233445555431     11122 3344566888888899999999998775432    


Q ss_pred             --hccCCCCCC-CcEEEEeeCChHHHhhcccce
Q 046889          274 --RVGIPYGND-GCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       274 --~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~  303 (333)
                        .+....... +..||++||+..... .+++.
T Consensus       181 l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v  212 (271)
T PRK13632        181 IKKIMVDLRKTRKKTLISITHDMDEAI-LADKV  212 (271)
T ss_pred             HHHHHHHHHHhcCcEEEEEEechhHHh-hCCEE
Confidence              222222222 478999999988765 45544

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.56  E-value=2.9e-07  Score=73.75  Aligned_cols=145  Identities=13%  Similarity=0.182  Sum_probs=93.8

Q ss_pred             ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE---------------------
Q 046889          157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV---------------------  215 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~---------------------  215 (333)
                      .+-||..+.++.+...-..++  ||+|+|.+|+||||++++|.-...+.   ...+|+.                     
T Consensus        13 HK~~G~~eVLKGvSL~A~~Gd--VisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q   87 (256)
T COG4598          13 HKRYGEHEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQ   87 (256)
T ss_pred             HhhcccchhhcceeeecCCCC--EEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence            445777788888876666677  99999999999999999997554322   1222321                     


Q ss_pred             ----------eCCCCC-------------------------HHHHHHHHHHHhCCCCCC------CCCHHHHHHHHHHHH
Q 046889          216 ----------VSQTPS-------------------------ITKIQDEIAGWLGIKELP------DNDELVRASLLCKRI  254 (333)
Q Consensus       216 ----------v~~~~~-------------------------~~~~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~l  254 (333)
                                +.|.++                         ..+....++...|+....      -...++....|.+.|
T Consensus        88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaL  167 (256)
T COG4598          88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL  167 (256)
T ss_pred             HHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHH
Confidence                      001111                         111223344445543111      122355677899999


Q ss_pred             ccCceEEEEeCCCCchhhhhc------cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          255 EKQRVLVILDDLWVQIELDRV------GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       255 ~~k~~LlVlDdv~~~~~~~~l------~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .-.+-++++|++.+..|-+-.      ...+...|-..+++||...+|+.++++.+.|
T Consensus       168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fL  225 (256)
T COG4598         168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL  225 (256)
T ss_pred             hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEe
Confidence            999999999999987552221      1223344778999999999999999988433

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.56  E-value=9.9e-08  Score=84.09  Aligned_cols=139  Identities=12%  Similarity=0.187  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CCe--------------EEEEEeCCCCC-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FDE--------------VAMAVVSQTPS-  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~~--------------~~wv~v~~~~~-  221 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+      .+.  |+.              ....++++.+. 
T Consensus        34 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~  111 (267)
T PRK14235         34 ALFDVDLDIPEKT--VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP  111 (267)
T ss_pred             EEEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence            4555555566777  9999999999999999999987532      110  000              01122333211 


Q ss_pred             ----HH--------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 ----IT--------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 ----~~--------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                          +.                    .....+++.+++..         ....+ .+.....+.+.|..++-+++||++.
T Consensus       112 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt  191 (267)
T PRK14235        112 FPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPC  191 (267)
T ss_pred             CCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence                11                    11123344444421         11112 3344566888888899999999998


Q ss_pred             Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|..      .+...... +..||++||+.+.+..++++.+.+
T Consensus       192 ~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l  235 (267)
T PRK14235        192 SALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFF  235 (267)
T ss_pred             cCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEE
Confidence            764422      22122222 567999999999887776666444

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.56  E-value=2.2e-07  Score=79.93  Aligned_cols=138  Identities=20%  Similarity=0.223  Sum_probs=79.4

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCCH--HHHH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPSI--TKIQ-  226 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~~--~~~~-  226 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++            .....++++.+..  ..+. 
T Consensus        18 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~   95 (229)
T cd03254          18 VLKDINFSIKPGE--TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIME   95 (229)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHH
Confidence            5566666666777  8999999999999999999877543211   00            0001122332211  0111 


Q ss_pred             --------------HHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          227 --------------DEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       227 --------------~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                                    ...+..++..                .....+ .+...-.|.+.|..++-+++||++.+..|    
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~  175 (229)
T cd03254          96 NIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE  175 (229)
T ss_pred             HHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence                          1111111110                011222 33445678888889999999999987654    


Q ss_pred             --hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                        +..+..... .|..||++||+...... +++.+.|
T Consensus       176 ~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~i~~l  210 (229)
T cd03254         176 KLIQEALEKLM-KGRTSIIIAHRLSTIKN-ADKILVL  210 (229)
T ss_pred             HHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEEEE
Confidence              222222222 36789999999988764 5555444

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=2.2e-07  Score=81.51  Aligned_cols=139  Identities=10%  Similarity=0.206  Sum_probs=80.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CCe--------------EEEEEeCCCCC-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FDE--------------VAMAVVSQTPS-  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~~--------------~~wv~v~~~~~-  221 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+....      .+.  ++.              ....++++.+. 
T Consensus        27 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~  104 (259)
T PRK14274         27 ALKNINLSIPENE--VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP  104 (259)
T ss_pred             eEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence            4555555556677  8999999999999999999876531      111  000              01122333211 


Q ss_pred             ----HH-------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          222 ----IT-------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       222 ----~~-------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                          ..                   .....+++.+++..         ....+ .+.....+.+.+..++-+++||++.+
T Consensus       105 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~  184 (259)
T PRK14274        105 FPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTS  184 (259)
T ss_pred             cccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence                10                   01112333444311         11112 23445567888888999999999987


Q ss_pred             chh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          269 QIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       269 ~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|      +..+...... +..||++||+.+.+..++++.+.|
T Consensus       185 ~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l  227 (259)
T PRK14274        185 ALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFF  227 (259)
T ss_pred             cCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEE
Confidence            644      2222222223 567999999998877776766444

>PLN03073 ABC transporter F family; Provisional

Probab=98.56  E-value=1.4e-07  Score=93.81  Aligned_cols=140  Identities=21%  Similarity=0.214  Sum_probs=86.5

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-eEEEEEeCCCC----CH-------------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-EVAMAVVSQTP----SI-------------  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-~~~wv~v~~~~----~~-------------  222 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+.+...+...   +. .....++++..    +.             
T Consensus       523 ~il~~vsl~i~~Ge--~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~  600 (718)
T PLN03073        523 LLFKNLNFGIDLDS--RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFP  600 (718)
T ss_pred             eeEeccEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcC
Confidence            35666766666777  9999999999999999999987543221   00 00111222221    00             


Q ss_pred             ---HHHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cCCCCC-CCcEEEE
Q 046889          223 ---TKIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GIPYGN-DGCKFLL  288 (333)
Q Consensus       223 ---~~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~~~~-~g~~viv  288 (333)
                         ....+.++..+++.. .     ...+ .+...-.+...+..++-+|+||++.+..|....   ...+.. .| .||+
T Consensus       601 ~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~g-tvIi  679 (718)
T PLN03073        601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQG-GVLM  679 (718)
T ss_pred             CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCC-EEEE
Confidence               112344566666631 1     1122 344456688888899999999999987553322   101111 24 6999


Q ss_pred             eeCChHHHhhcccceEec
Q 046889          289 TSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       289 TTr~~~v~~~~~~~~~~l  306 (333)
                      +||+...+..+++..+.+
T Consensus       680 vSHd~~~i~~~~drv~~l  697 (718)
T PLN03073        680 VSHDEHLISGSVDELWVV  697 (718)
T ss_pred             EECCHHHHHHhCCEEEEE
Confidence            999999988877776544

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=5.9e-07  Score=79.27  Aligned_cols=135  Identities=16%  Similarity=0.212  Sum_probs=81.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--------C---------CeEEEEEeCCCC-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--------F---------DEVAMAVVSQTP-------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--------f---------~~~~wv~v~~~~-------  220 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...        .         ....+  +++.+       
T Consensus        24 ~l~~isl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~--v~q~~~~~~~~~   99 (269)
T PRK13648         24 TLKDVSFNIPKGQ--WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI--VFQNPDNQFVGS   99 (269)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE--EEeChHHhcccc
Confidence            4555555566777  9999999999999999999977543210        0         00112  22221       


Q ss_pred             CH------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889          221 SI------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD---  273 (333)
Q Consensus       221 ~~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---  273 (333)
                      ..                  ......+++.+++...     ...+ .+.....+.+.+..++-+++||++.+..|..   
T Consensus       100 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~  179 (269)
T PRK13648        100 IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ  179 (269)
T ss_pred             cHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            00                  0112344555555321     1122 3445567888888899999999998775422   


Q ss_pred             ---hccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889          274 ---RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       274 ---~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                         .+..... ..|..||++||+...+.. +++.+
T Consensus       180 ~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~  213 (269)
T PRK13648        180 NLLDLVRKVKSEHNITIISITHDLSEAME-ADHVI  213 (269)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEE
Confidence               2222222 237789999999987654 55543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1.7e-07  Score=81.91  Aligned_cols=139  Identities=12%  Similarity=0.181  Sum_probs=81.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------cC------------CC----eEEEEEeCCCCCH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------KM------------FD----EVAMAVVSQTPSI  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~~------------f~----~~~wv~v~~~~~~  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+.      +.            ..    .....++++.+..
T Consensus        19 il~~~s~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~   96 (251)
T PRK14249         19 VLKNINMDFPERQ--ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP   96 (251)
T ss_pred             EecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence            4555555566777  89999999999999999998875432      10            00    0112223333210


Q ss_pred             --HHH----------------------HHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          223 --TKI----------------------QDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       223 --~~~----------------------~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                        ..+                      ...++..+++.         .....+ .+.....+.+.+..++-+++||++.+
T Consensus        97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~  176 (251)
T PRK14249         97 FPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCS  176 (251)
T ss_pred             CcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence              011                      11112222221         111112 23445567788888999999999987


Q ss_pred             chh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          269 QIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       269 ~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|      +..+..... .+..||++||+......++++.+.+
T Consensus       177 ~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l  219 (251)
T PRK14249        177 ALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFL  219 (251)
T ss_pred             cCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEE
Confidence            644      222222222 3678999999999887777766444

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1.3e-07  Score=84.15  Aligned_cols=140  Identities=11%  Similarity=0.200  Sum_probs=82.0

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH------hhcC--CC--------------eEEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK------EKKM--FD--------------EVAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~------~~~~--f~--------------~~~wv~v~~~~~  221 (333)
                      ..++.+...+..|+  +++|+|++|+|||||++.+.+...      ..+.  |+              .....++++.+.
T Consensus        53 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  130 (286)
T PRK14275         53 EAVKKVNADILSKY--VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN  130 (286)
T ss_pred             EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence            35566666666777  999999999999999999998532      1110  00              011223333321


Q ss_pred             H------------------------HHHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 I------------------------TKIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 ~------------------------~~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                      .                        ......+++.+++.         .....+ .+.....+.+.|..++-+++||++.
T Consensus       131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt  210 (286)
T PRK14275        131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT  210 (286)
T ss_pred             CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            0                        01112233333321         011112 2344556888888899999999998


Q ss_pred             Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|.      ..+...... +..||++||+.+.+..++++.+.|
T Consensus       211 ~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L  254 (286)
T PRK14275        211 SALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFF  254 (286)
T ss_pred             ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence            76442      222222222 467999999999887777766444

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.56  E-value=1.3e-07  Score=74.81  Aligned_cols=140  Identities=12%  Similarity=0.258  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-----------------EeCC--------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-----------------VVSQ--------  218 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-----------------~v~~--------  218 (333)
                      ..++.++..+..|+  .++|+||+|+|||||.+.++....+...  ...|-                 ++.|        
T Consensus        17 ~il~~isl~v~~Ge--~iaitGPSG~GKStllk~va~Lisp~~G--~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t   92 (223)
T COG4619          17 KILNNISLSVRAGE--FIAITGPSGCGKSTLLKIVASLISPTSG--TLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT   92 (223)
T ss_pred             eeecceeeeecCCc--eEEEeCCCCccHHHHHHHHHhccCCCCc--eEEEcCccccccChHHHHHHHHHHHcCccccccc
Confidence            34455565666777  8999999999999999999977543221  11110                 0111        


Q ss_pred             --------------CCCHHHHHHHHHHHhCCCCC------CC-CCHHHHHHHHHHHHccCceEEEEeCCCCchh------
Q 046889          219 --------------TPSITKIQDEIAGWLGIKEL------PD-NDELVRASLLCKRIEKQRVLVILDDLWVQIE------  271 (333)
Q Consensus       219 --------------~~~~~~~~~~i~~~l~~~~~------~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------  271 (333)
                                    .++ .....+++.+++++..      .. ...+.....+.+.|+-.+-+|+||++.+..+      
T Consensus        93 VeDNlifP~~~r~rr~d-r~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~  171 (223)
T COG4619          93 VEDNLIFPWQIRNRRPD-RAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN  171 (223)
T ss_pred             hhhccccchHHhccCCC-hHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHH
Confidence                          111 2334456666665411      11 2234556778888899999999998876533      


Q ss_pred             hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEecCC
Q 046889          272 LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVRT  308 (333)
Q Consensus       272 ~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~~  308 (333)
                      .+.+.+... .....|+-+||+++-+-......+.+.+
T Consensus       172 ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~  209 (223)
T COG4619         172 IEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP  209 (223)
T ss_pred             HHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc
Confidence            444433332 4467799999999987666555555543

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1.1e-07  Score=83.41  Aligned_cols=140  Identities=8%  Similarity=0.186  Sum_probs=82.0

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~~~~  221 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+      .+.  ++              .....++++.+.
T Consensus        26 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  103 (258)
T PRK14268         26 QALKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN  103 (258)
T ss_pred             eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence            35566666666777  8999999999999999999875431      110  00              000122233221


Q ss_pred             -----HHH------------------HHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          222 -----ITK------------------IQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       222 -----~~~------------------~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                           ..+                  ....+++.++...         ....+ .+...-.+.+.|..++-+++||++.+
T Consensus       104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~  183 (258)
T PRK14268        104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS  183 (258)
T ss_pred             cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence                 100                  1123444444310         01112 23445568888888999999999987


Q ss_pred             chhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          269 QIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       269 ~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|.      ..+...... |..||++||+...+..++++.+.+
T Consensus       184 ~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l  226 (258)
T PRK14268        184 ALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFF  226 (258)
T ss_pred             ccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEE
Confidence            6442      222222222 678999999999877777766444

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.55  E-value=2.3e-07  Score=81.01  Aligned_cols=139  Identities=14%  Similarity=0.242  Sum_probs=80.4

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH--h----hcC--CCe--------------EEEEEeCCCCC-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK--E----KKM--FDE--------------VAMAVVSQTPS-  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~--~----~~~--f~~--------------~~wv~v~~~~~-  221 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...  +    .+.  |+.              ....++++.+. 
T Consensus        20 ~l~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~   97 (251)
T PRK14244         20 ILFDINLDIYKRE--VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP   97 (251)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence            4555555566677  999999999999999999987643  1    110  000              00112233221 


Q ss_pred             ----HH--------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 ----IT--------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 ----~~--------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                          ..                    .....+++.+++..         ....+ .+.....+.+.+..++-+++||++.
T Consensus        98 ~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt  177 (251)
T PRK14244         98 FPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPC  177 (251)
T ss_pred             ccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                10                    01123344444421         01111 2334556778888889999999998


Q ss_pred             Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|      +..+..... .|..||++||+...+..++++.+.+
T Consensus       178 ~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l  221 (251)
T PRK14244        178 SALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFF  221 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEE
Confidence            7643      222222222 2678999999999877766666444

>PLN03073 ABC transporter F family; Provisional

Probab=98.55  E-value=7.8e-08  Score=95.49  Aligned_cols=61  Identities=18%  Similarity=0.166  Sum_probs=42.2

Q ss_pred             HHHHHHHHHccCceEEEEeCCCCchhhhhcc---CCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          246 RASLLCKRIEKQRVLVILDDLWVQIELDRVG---IPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       246 ~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~---~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ....|.+.|..++-+|+||++.+..|.....   -.+...+..||++||+......+++..+.|
T Consensus       351 ~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l  414 (718)
T PLN03073        351 MRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHL  414 (718)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            3456777888889999999999875533220   011122567999999999988877776444

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.55  E-value=3.5e-07  Score=82.91  Aligned_cols=88  Identities=17%  Similarity=0.183  Sum_probs=60.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCCHHHH-----HHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTP--SITKIQDEIAGWLGIKELPDNDELVR-----ASLLCK  252 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~-----~~~l~~  252 (333)
                      ..+|+|++|+|||||++.|++..... +|+..+|+.+.+..  ++.++.+.+...+-....+.....+.     .....+
T Consensus       171 R~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae  249 (416)
T PRK09376        171 RGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK  249 (416)
T ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            79999999999999999999998765 89999999998876  56666766652211112222222111     122333


Q ss_pred             HH--ccCceEEEEeCCCC
Q 046889          253 RI--EKQRVLVILDDLWV  268 (333)
Q Consensus       253 ~l--~~k~~LlVlDdv~~  268 (333)
                      .+  .+++.+|++|++..
T Consensus       250 ~~~e~G~dVlL~iDsItR  267 (416)
T PRK09376        250 RLVEHGKDVVILLDSITR  267 (416)
T ss_pred             HHHHcCCCEEEEEEChHH
Confidence            32  45899999999863

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.55  E-value=2.1e-06  Score=77.62  Aligned_cols=149  Identities=13%  Similarity=0.195  Sum_probs=86.3

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEe--CCCCCHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVV--SQTPSITKIQDEIA  230 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~  230 (333)
                      |.....++|++..++.+..++..+..+.+.++|+.|+||||+++.+.+...... +.. .++.+  +...... .....+
T Consensus        13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~~-~~~~~i   89 (319)
T PRK00440         13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGID-VIRNKI   89 (319)
T ss_pred             CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccchH-HHHHHH
Confidence            334456889999999999999877766789999999999999999988764321 211 12222  1111111 111111


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHHH---ccCceEEEEeCCCCch--h---hhhccCCCCCCCcEEEEeeCChH-HHhhccc
Q 046889          231 GWLGIKELPDNDELVRASLLCKRI---EKQRVLVILDDLWVQI--E---LDRVGIPYGNDGCKFLLTSRSRA-ACNQMQA  301 (333)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~--~---~~~l~~~~~~~g~~vivTTr~~~-v~~~~~~  301 (333)
                      ..+                 ....   ...+-++++|++....  .   +..+ +......+.+|+++.... +...+..
T Consensus        90 ~~~-----------------~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~-le~~~~~~~lIl~~~~~~~l~~~l~s  151 (319)
T PRK00440         90 KEF-----------------ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRT-MEMYSQNTRFILSCNYSSKIIDPIQS  151 (319)
T ss_pred             HHH-----------------HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHH-HhcCCCCCeEEEEeCCccccchhHHH
Confidence            111                 1111   1245689999986442  1   2222 111223466777665432 2221211


Q ss_pred             c--eEecCCCCHHHHHHHHHhhc
Q 046889          302 H--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       302 ~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      +  .+.+.++++++....+.+.+
T Consensus       152 r~~~~~~~~l~~~ei~~~l~~~~  174 (319)
T PRK00440        152 RCAVFRFSPLKKEAVAERLRYIA  174 (319)
T ss_pred             HhheeeeCCCCHHHHHHHHHHHH
Confidence            2  38899999999888887765

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.55  E-value=7.9e-08  Score=80.30  Aligned_cols=144  Identities=13%  Similarity=0.250  Sum_probs=88.6

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EE--------------EEEeCCCCCH
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VA--------------MAVVSQTPSI  222 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~--------------wv~v~~~~~~  222 (333)
                      +....++.+...+.+++  .|+|+|++|+|||||.+.+.....+...   |.. -+              .-.+.|.+++
T Consensus        15 ~~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL   92 (258)
T COG3638          15 GGHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL   92 (258)
T ss_pred             CCceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence            56666777777788888  9999999999999999999865433211   000 00              0122222211


Q ss_pred             ------------------------------H--HHHHHHHHHhCCCC------CCCCCHHHHHHHHHHHHccCceEEEEe
Q 046889          223 ------------------------------T--KIQDEIAGWLGIKE------LPDNDELVRASLLCKRIEKQRVLVILD  264 (333)
Q Consensus       223 ------------------------------~--~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlD  264 (333)
                                                    +  ...-+.++++++.+      ..-...++.+-.|.+.|.+++-+|+-|
T Consensus        93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILAD  172 (258)
T COG3638          93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILAD  172 (258)
T ss_pred             ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecC
Confidence                                          1  11112234444321      111223455678999999999999999


Q ss_pred             CCCCchh-------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          265 DLWVQIE-------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       265 dv~~~~~-------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ++-+..|       .+.+.-.....|..||++.|..+.|..++++.|-|
T Consensus       173 EPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl  221 (258)
T COG3638         173 EPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGL  221 (258)
T ss_pred             CcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEe
Confidence            8875533       22221112334889999999999998888776433

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.55  E-value=1.4e-07  Score=83.20  Aligned_cols=140  Identities=15%  Similarity=0.269  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------  220 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++.               ....++++.+      
T Consensus        27 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  104 (268)
T PRK10419         27 VLNNVSLSLKSGE--TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP  104 (268)
T ss_pred             eEeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence            4566666666777  8999999999999999999876533210   000               0011122211      


Q ss_pred             --CHH-------------------HHHHHHHHHhCCC-CC-----CC-CCHHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 --SIT-------------------KIQDEIAGWLGIK-EL-----PD-NDELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 --~~~-------------------~~~~~i~~~l~~~-~~-----~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                        +..                   .....++..++.. ..     .. ...+.....+.+.+..++-+++||++.+..|.
T Consensus       105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~  184 (268)
T PRK10419        105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL  184 (268)
T ss_pred             CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence              111                   1233455555553 11     11 12344566788888899999999999877542


Q ss_pred             h------hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          273 D------RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~------~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .      .+...... .|..||++||+......+++..+.+
T Consensus       185 ~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l  225 (268)
T PRK10419        185 VLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM  225 (268)
T ss_pred             HHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE
Confidence            2      22222222 3778999999999887766666433

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.54  E-value=1e-07  Score=92.25  Aligned_cols=141  Identities=16%  Similarity=0.240  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCe---------------EEEEEeCCCC------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDE---------------VAMAVVSQTP------  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~---------------~~wv~v~~~~------  220 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+.+.....+.  ++.               ....++++.+      
T Consensus       300 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~  377 (529)
T PRK15134        300 VVVKNISFTLRPGE--TLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP  377 (529)
T ss_pred             eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence            45777777777788  9999999999999999999875421110  000               0012223321      


Q ss_pred             --CHH--------------------HHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889          221 --SIT--------------------KIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE  271 (333)
Q Consensus       221 --~~~--------------------~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~  271 (333)
                        +..                    .....+++.+++. ..     ...+ -+.....+...+..++-+++||++.+..|
T Consensus       378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD  457 (529)
T PRK15134        378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD  457 (529)
T ss_pred             cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence              110                    1123445555553 11     1112 34456678888888999999999987755


Q ss_pred             hh------hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          272 LD------RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ~~------~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..      .+...... .|..||++||+...+..++++.+.+
T Consensus       458 ~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l  499 (529)
T PRK15134        458 KTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVL  499 (529)
T ss_pred             HHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEE
Confidence            22      22222222 3778999999999887777776544

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=1.1e-07  Score=91.56  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh--hcC--CCe-------------EEEEEeCCCC------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE--KKM--FDE-------------VAMAVVSQTP------  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~--f~~-------------~~wv~v~~~~------  220 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+++..++  .+.  |+.             ....++++.+      
T Consensus       276 ~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  353 (506)
T PRK13549        276 KRVDDVSFSLRRGE--ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV  353 (506)
T ss_pred             ccccceeeEEcCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence            46677777777777  9999999999999999999976431  110  000             0011222220      


Q ss_pred             ---CH-----------------------HHHHHHHHHHhCCC-CCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          221 ---SI-----------------------TKIQDEIAGWLGIK-ELP-----DND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       221 ---~~-----------------------~~~~~~i~~~l~~~-~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                         +.                       ......+++.+++. ...     ..+ -+.....+.+.+..++-+++||++.
T Consensus       354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt  433 (506)
T PRK13549        354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT  433 (506)
T ss_pred             CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence               00                       01233456666653 111     112 3445667888888899999999998


Q ss_pred             Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|..      .+.......|..||++||+.+.+..++++.+.+
T Consensus       434 ~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l  478 (506)
T PRK13549        434 RGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVM  478 (506)
T ss_pred             CCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            775422      222222234778999999999877776665433

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.4e-07  Score=82.71  Aligned_cols=140  Identities=10%  Similarity=0.194  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CCe--------------EEEEEeCCCC-
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FDE--------------VAMAVVSQTP-  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~~--------------~~wv~v~~~~-  220 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...+      .+.  ++.              .....+.+.+ 
T Consensus        18 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~   95 (258)
T PRK14241         18 HAVEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN   95 (258)
T ss_pred             eeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence            34556666666777  9999999999999999999987532      110  000              0112223221 


Q ss_pred             -----CHH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889          221 -----SIT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDL  266 (333)
Q Consensus       221 -----~~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv  266 (333)
                           ++.                   .....+++.+++.         .....+ .+...-.+.+.+..++-+++||++
T Consensus        96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  175 (258)
T PRK14241         96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP  175 (258)
T ss_pred             cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                 111                   1112334444431         011112 234455677888888999999999


Q ss_pred             CCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          267 WVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       267 ~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+..|      +..+..... .+..||++||+...+..++++.+.+
T Consensus       176 t~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~~l  220 (258)
T PRK14241        176 CSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTAFF  220 (258)
T ss_pred             CccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEE
Confidence            87644      222222222 2467999999998877766766444

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.54  E-value=1.3e-07  Score=80.39  Aligned_cols=134  Identities=10%  Similarity=-0.026  Sum_probs=70.9

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCC------CCCHHHHHHH----------
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQ------TPSITKIQDE----------  228 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~------~~~~~~~~~~----------  228 (333)
                      +...+..++  +++|+|+||+|||||++.+.+...+...    +.... +.+++      ..+..+.+.-          
T Consensus         6 vs~~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~-~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~   82 (213)
T PRK15177          6 TDFVMGYHE--HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA-LPLGANSFILPGLTGEENARMMASLYGLDGD   82 (213)
T ss_pred             eeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce-eccccccccCCcCcHHHHHHHHHHHcCCCHH
Confidence            333445566  9999999999999999999987543221    11111 11111      1121221111          


Q ss_pred             -----HHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeC
Q 046889          229 -----IAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSR  291 (333)
Q Consensus       229 -----i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr  291 (333)
                           +...+++...     ...+ .+...-.+...+..++-++++|++.+..+      +..+...... +..+|++||
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH  161 (213)
T PRK15177         83 EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLTH  161 (213)
T ss_pred             HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEEC
Confidence                 1111122110     1111 22234457777778888999999854422      2221111111 234899999


Q ss_pred             ChHHHhhcccceEec
Q 046889          292 SRAACNQMQAHIVDV  306 (333)
Q Consensus       292 ~~~v~~~~~~~~~~l  306 (333)
                      +......++++.+.|
T Consensus       162 ~~~~~~~~~d~i~~l  176 (213)
T PRK15177        162 NPRLIKEHCHAFGVL  176 (213)
T ss_pred             CHHHHHHhcCeeEEE
Confidence            999877666665333

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.54  E-value=4.7e-07  Score=82.10  Aligned_cols=137  Identities=13%  Similarity=0.229  Sum_probs=82.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   |+.               .....+.|++      
T Consensus        36 ~l~~vsl~i~~Ge--~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p  113 (331)
T PRK15079         36 AVDGVTLRLYEGE--TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP  113 (331)
T ss_pred             EEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence            4555555566777  9999999999999999999876543210   000               0122233332      


Q ss_pred             --CHHH--------------------HHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889          221 --SITK--------------------IQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE  271 (333)
Q Consensus       221 --~~~~--------------------~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~  271 (333)
                        ++.+                    ...++++.+++.. .     ...+ -+.+...|...|..++-+||+|++.+..|
T Consensus       114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD  193 (331)
T PRK15079        114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD  193 (331)
T ss_pred             CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence              1111                    1123344455421 1     1111 34456678888889999999999987754


Q ss_pred             h------hhccCCCC-CCCcEEEEeeCChHHHhhcccce
Q 046889          272 L------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       272 ~------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      .      ..+..... ..|..||++||+...+..++++.
T Consensus       194 ~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri  232 (331)
T PRK15079        194 VSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRV  232 (331)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence            2      22222222 23788999999999988777766

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.54  E-value=1.8e-07  Score=90.96  Aligned_cols=138  Identities=17%  Similarity=0.241  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCC------CHHHHH-------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTP------SITKIQ-------  226 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~------~~~~~~-------  226 (333)
                      ..++++...+..++  +++|+|+||+|||||++.+.+...+...   +.. ....++++.+      ++.+.+       
T Consensus        19 ~il~~is~~i~~Ge--~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~   96 (552)
T TIGR03719        19 EILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEI   96 (552)
T ss_pred             eeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHH
Confidence            45667777777788  9999999999999999999987643221   110 1112333332      111111       


Q ss_pred             -----------------------------------------------HHHHHHhCCCC----CCCCC-HHHHHHHHHHHH
Q 046889          227 -----------------------------------------------DEIAGWLGIKE----LPDND-ELVRASLLCKRI  254 (333)
Q Consensus       227 -----------------------------------------------~~i~~~l~~~~----~~~~~-~~~~~~~l~~~l  254 (333)
                                                                     ..++..+++..    ....+ .+.....+...+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al  176 (552)
T TIGR03719        97 KDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLL  176 (552)
T ss_pred             HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHH
Confidence                                                           01112222211    01111 234456688888


Q ss_pred             ccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          255 EKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       255 ~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..++-+++||++.+..|..      .+....   +..||++||+......++++.+.+
T Consensus       177 ~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l  231 (552)
T TIGR03719       177 LSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILEL  231 (552)
T ss_pred             hcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEE
Confidence            8899999999998775422      221222   246999999999887777665433

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=3.9e-07  Score=80.80  Aligned_cols=136  Identities=16%  Similarity=0.227  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------CH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------SI  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------~~  222 (333)
                      .++.+...+..|+  +++|+|++|+|||||++.+.+..++...   |+.            ....++++.+       ++
T Consensus        22 ~l~~vsl~i~~Ge--~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv   99 (279)
T PRK13635         22 ALKDVSFSVYEGE--WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV   99 (279)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccH
Confidence            5555666666777  9999999999999999999977543221   100            0112222221       11


Q ss_pred             H------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h
Q 046889          223 T------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L  272 (333)
Q Consensus       223 ~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~  272 (333)
                      .                  .....++..+++...     ...+ .+.....+.+.|..++-+++||++.+..|      +
T Consensus       100 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l  179 (279)
T PRK13635        100 QDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV  179 (279)
T ss_pred             HHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            1                  112333444444311     1112 33445668888888999999999987644      2


Q ss_pred             hhccCCCCC-CCcEEEEeeCChHHHhhcccce
Q 046889          273 DRVGIPYGN-DGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       273 ~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      ..+...... .|..||++||+.+.... +++.
T Consensus       180 ~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i  210 (279)
T PRK13635        180 LETVRQLKEQKGITVLSITHDLDEAAQ-ADRV  210 (279)
T ss_pred             HHHHHHHHHcCCCEEEEEecCHHHHHc-CCEE
Confidence            222222222 37889999999987764 5544

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.53  E-value=1.5e-07  Score=91.62  Aligned_cols=143  Identities=18%  Similarity=0.258  Sum_probs=88.5

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-EEEEeCCCC-------CHH-----
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-AMAVVSQTP-------SIT-----  223 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-~wv~v~~~~-------~~~-----  223 (333)
                      ++....++.+...+..|+  +++|+|+||+|||||++.+.+...+...   +... ...++++.+       +..     
T Consensus       332 ~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~  409 (552)
T TIGR03719       332 FGDKLLIDDLSFKLPPGG--IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISG  409 (552)
T ss_pred             ECCeeeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHh
Confidence            344456777777777777  9999999999999999999877543211   1100 112233321       111     


Q ss_pred             -----------HHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCC
Q 046889          224 -----------KIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPY  279 (333)
Q Consensus       224 -----------~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~  279 (333)
                                 ...+.++..+++.. .     ...+ .+...-.+...+..++-+++||++.+..|...      +....
T Consensus       410 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  489 (552)
T TIGR03719       410 GLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF  489 (552)
T ss_pred             hccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence                       11234566666531 1     1112 23445678888889999999999988755222      21222


Q ss_pred             CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          280 GNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       280 ~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                        .| .||++||+.+.+..++++.+.++
T Consensus       490 --~~-~viivsHd~~~~~~~~d~i~~l~  514 (552)
T TIGR03719       490 --AG-CAVVISHDRWFLDRIATHILAFE  514 (552)
T ss_pred             --CC-eEEEEeCCHHHHHHhCCEEEEEE
Confidence              24 59999999998888777775553

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.53  E-value=2e-07  Score=82.21  Aligned_cols=141  Identities=11%  Similarity=0.211  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh-----h-c--CCCe--------------EEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE-----K-K--MFDE--------------VAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-----~-~--~f~~--------------~~wv~v~~~~~  221 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+....     . +  .++.              ....++++.+.
T Consensus        27 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  104 (269)
T PRK14259         27 EAVKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN  104 (269)
T ss_pred             EEEcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence            35666666666777  9999999999999999999876431     1 1  0000              01223333321


Q ss_pred             -----H-----------------HHHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCc
Q 046889          222 -----I-----------------TKIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQ  269 (333)
Q Consensus       222 -----~-----------------~~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~  269 (333)
                           .                 ......+++.++..         .....+ .+...-.+.+.|..++-+++||++.+.
T Consensus       105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g  184 (269)
T PRK14259        105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA  184 (269)
T ss_pred             cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence                 0                 01112233444321         001112 234455677888889999999999876


Q ss_pred             hh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          270 IE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       270 ~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .|      +..+...... +..||++||+...+..++++.+.|.
T Consensus       185 LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~  227 (269)
T PRK14259        185 LDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFN  227 (269)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEe
Confidence            44      2222222222 5679999999998888888776555

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.53  E-value=3.8e-07  Score=77.87  Aligned_cols=140  Identities=14%  Similarity=0.213  Sum_probs=81.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------------C--eEEEEEeCCCCC----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------------D--EVAMAVVSQTPS----  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------------~--~~~wv~v~~~~~----  221 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+++...+...   +              .  .....++++.+.    
T Consensus        16 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   93 (218)
T cd03290          16 TLSNINIRIPTGQ--LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA   93 (218)
T ss_pred             ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccc
Confidence            4555555556677  9999999999999999999977532110   0              0  011223333321    


Q ss_pred             -HH-----------HHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          222 -IT-----------KIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       222 -~~-----------~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                       ..           .....+++.+++.                .....+ .+...-.|.+.+..++-+++||++.+..+.
T Consensus        94 t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~  173 (218)
T cd03290          94 TVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI  173 (218)
T ss_pred             cHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCH
Confidence             10           1112333333321                011122 344566788888889999999999876442


Q ss_pred             h------h--ccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          273 D------R--VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       273 ~------~--l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .      .  +.......|..||++||+...... +++.+.+.
T Consensus       174 ~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~  215 (218)
T cd03290         174 HLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH-ADWIIAMK  215 (218)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh-CCEEEEec
Confidence            2      1  211223347789999999988653 55545543

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.53  E-value=4.4e-06  Score=82.39  Aligned_cols=166  Identities=16%  Similarity=0.112  Sum_probs=101.7

Q ss_pred             ccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHHHHhh---cCCC--eEEEEEeCCCCCHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD-----EKVSIIGICGRGGIGKTTLVKEIQKQAKEK---KMFD--EVAMAVVSQTPSITKIQ  226 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~f~--~~~wv~v~~~~~~~~~~  226 (333)
                      ..+.+|+++++.|...|.+     +...++.|.|+.|+|||++++.|.......   ....  ..+++.+..-..+..+.
T Consensus       755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY  834 (1164)
T PTZ00112        755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY  834 (1164)
T ss_pred             CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence            4567999999999888753     222467899999999999999998776432   1222  23455555556677788


Q ss_pred             HHHHHHhCCC-CCCCCCHHHHHHHHHHHHcc---CceEEEEeCCCCch-----hhhhc-cCCCCCCCcEE--EEeeCChH
Q 046889          227 DEIAGWLGIK-ELPDNDELVRASLLCKRIEK---QRVLVILDDLWVQI-----ELDRV-GIPYGNDGCKF--LLTSRSRA  294 (333)
Q Consensus       227 ~~i~~~l~~~-~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~-----~~~~l-~~~~~~~g~~v--ivTTr~~~  294 (333)
                      ..|..++... +....+..+....+...+..   ...+|||||+....     .+..+ ..+. ..+++|  |.+|.+.+
T Consensus       835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~-~s~SKLiLIGISNdlD  913 (1164)
T PTZ00112        835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT-KINSKLVLIAISNTMD  913 (1164)
T ss_pred             HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh-ccCCeEEEEEecCchh
Confidence            8888888432 22222333444555554422   23589999987432     12222 1122 224444  33554433


Q ss_pred             H--------HhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889          295 A--------CNQMQAHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       295 v--------~~~~~~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      +        ..+++...+...|++.++-..++.+++-
T Consensus       914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe  950 (1164)
T PTZ00112        914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE  950 (1164)
T ss_pred             cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence            2        2223333367799999999999999875

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.53  E-value=2.7e-07  Score=88.60  Aligned_cols=140  Identities=12%  Similarity=0.185  Sum_probs=84.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE-------------EEEEeCCCC--------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV-------------AMAVVSQTP--------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~-------------~wv~v~~~~--------  220 (333)
                      .++.+...+..|+  +++|+|+||+|||||++.+++..++...   ++..             ...++++..        
T Consensus       263 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~  340 (491)
T PRK10982        263 SIRDVSFDLHKGE--ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY  340 (491)
T ss_pred             ccceeeEEEeCCc--EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence            5566665566677  9999999999999999999866432110   0000             001111110        


Q ss_pred             -C------------------------HHHHHHHHHHHhCCC-CCC-----C-CCHHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          221 -S------------------------ITKIQDEIAGWLGIK-ELP-----D-NDELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       221 -~------------------------~~~~~~~i~~~l~~~-~~~-----~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                       +                        .......++..++.. ...     . +.-+.....+...+..++-+++||++.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~  420 (491)
T PRK10982        341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR  420 (491)
T ss_pred             CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence             0                        011123444555542 111     1 1234556678888889999999999987


Q ss_pred             chhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          269 QIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       269 ~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|..      .+.......|..||++||+.+.+..++++.+.+
T Consensus       421 gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l  464 (491)
T PRK10982        421 GIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVM  464 (491)
T ss_pred             ccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEE
Confidence            75422      222222334777999999999888887776544

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.53  E-value=2.8e-07  Score=77.26  Aligned_cols=123  Identities=17%  Similarity=0.237  Sum_probs=71.1

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------EEEEEeCCCC------CHH------------
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------VAMAVVSQTP------SIT------------  223 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------~~wv~v~~~~------~~~------------  223 (333)
                      +..++  +++|+|++|+|||||++.+.+...+...   ++.        ....++++..      +..            
T Consensus        23 i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~  100 (195)
T PRK13541         23 FLPSA--ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNS  100 (195)
T ss_pred             EcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhccc
Confidence            34566  9999999999999999999987543221   000        0011222221      111            


Q ss_pred             -HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEee
Q 046889          224 -KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTS  290 (333)
Q Consensus       224 -~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTT  290 (333)
                       .....+++.++......     .+ .+.....+.+.+..++-+++||++.+..|      +..+.......|..||++|
T Consensus       101 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s  180 (195)
T PRK13541        101 AETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSS  180 (195)
T ss_pred             HHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence             11233445555431111     11 23445567888888999999999987644      2222111223477899999


Q ss_pred             CChHHHh
Q 046889          291 RSRAACN  297 (333)
Q Consensus       291 r~~~v~~  297 (333)
                      |+.....
T Consensus       181 h~~~~i~  187 (195)
T PRK13541        181 HLESSIK  187 (195)
T ss_pred             CCccccc
Confidence            9987644

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.53  E-value=9.2e-08  Score=87.82  Aligned_cols=155  Identities=21%  Similarity=0.228  Sum_probs=95.4

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----------------------------CCCeEEEEEe
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----------------------------MFDEVAMAVV  216 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----------------------------~f~~~~wv~v  216 (333)
                      ..+.+...+..+.  +-++.|.||+|||||++.+|+..+++.                            ||...--.++
T Consensus        19 And~V~l~v~~Ge--IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV   96 (501)
T COG3845          19 ANDDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTV   96 (501)
T ss_pred             ecCceeeeecCCc--EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccch
Confidence            3344555556677  899999999999999999998876542                            3321111111


Q ss_pred             CCC------------CC---HHHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCc---hh-
Q 046889          217 SQT------------PS---ITKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQ---IE-  271 (333)
Q Consensus       217 ~~~------------~~---~~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~-  271 (333)
                      .++            .+   ...-+..+..+++++-.+     ..+ -.++.-.|.+.|-...-+||||++...   .+ 
T Consensus        97 ~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~  176 (501)
T COG3845          97 AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA  176 (501)
T ss_pred             hhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            111            01   233455667777775111     122 244566788888888889999999865   23 


Q ss_pred             --hhhccCCCCCCCcEEEEeeCChHHHhhcccce-----------Ee-cCCCCHHHHHHHHHhh
Q 046889          272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI-----------VD-VRTLTEEESWRSAEGK  321 (333)
Q Consensus       272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~-----------~~-l~~L~~~e~~~lf~~~  321 (333)
                        +......+...|..||++||--.-+..+++..           +. ....+.++..+|.-.+
T Consensus       177 ~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~  240 (501)
T COG3845         177 DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGR  240 (501)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcCC
Confidence              33333445666999999999876655444432           23 4455677777766543

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.52  E-value=1.6e-07  Score=82.46  Aligned_cols=145  Identities=12%  Similarity=0.191  Sum_probs=86.5

Q ss_pred             ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hc-------C-----CC----eEEEEEe
Q 046889          159 FKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KK-------M-----FD----EVAMAVV  216 (333)
Q Consensus       159 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~-------~-----f~----~~~wv~v  216 (333)
                      ++|+...++.+...+.+++  +++|+|++|+|||||++.+.+...+      .+       .     +.    .....++
T Consensus        17 ~~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v   94 (261)
T PRK14263         17 FYGNFMAVRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV   94 (261)
T ss_pred             EeCCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEE
Confidence            3455456666666677777  9999999999999999999876532      11       0     00    0112333


Q ss_pred             CCCCC-----HH-----------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEe
Q 046889          217 SQTPS-----IT-----------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILD  264 (333)
Q Consensus       217 ~~~~~-----~~-----------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlD  264 (333)
                      ++.+.     ..                 .....+++.+++..         ....+ .+.....+.+.+..++-+++||
T Consensus        95 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  174 (261)
T PRK14263         95 FQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD  174 (261)
T ss_pred             ecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            33321     11                 11223444444321         01112 3444566888888899999999


Q ss_pred             CCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          265 DLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       265 dv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ++.+..|      +..+..... .+..||++||+...+..++++.+.+
T Consensus       175 EPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l  221 (261)
T PRK14263        175 EPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFF  221 (261)
T ss_pred             CCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEE
Confidence            9987644      222222222 2578999999999877777766444

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.52  E-value=7.4e-07  Score=80.82  Aligned_cols=139  Identities=10%  Similarity=0.187  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh----c--CCCe----------------EEEEEeCCCC-
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK----K--MFDE----------------VAMAVVSQTP-  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~--~f~~----------------~~wv~v~~~~-  220 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+.....    +  .|+.                .....+.|++ 
T Consensus        30 ~~l~~vsl~i~~Ge--~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~  107 (330)
T PRK09473         30 TAVNDLNFSLRAGE--TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM  107 (330)
T ss_pred             EEEeeeEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence            35566666666777  99999999999999999999876431    1  0000                0112233332 


Q ss_pred             -------CHHH-------------------HHHHHHHHhCCCCC--------CCCC-HHHHHHHHHHHHccCceEEEEeC
Q 046889          221 -------SITK-------------------IQDEIAGWLGIKEL--------PDND-ELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       221 -------~~~~-------------------~~~~i~~~l~~~~~--------~~~~-~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                             ....                   ...++++.+++.+.        ...+ .+.....|...|..++-|||+|+
T Consensus       108 ~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDE  187 (330)
T PRK09473        108 TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE  187 (330)
T ss_pred             hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence                   1111                   11233444444311        0111 23445678888889999999999


Q ss_pred             CCCchhh------hhccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889          266 LWVQIEL------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       266 v~~~~~~------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      +.+..|.      ..+..... ..|..||++||+...+..++++.+
T Consensus       188 Pts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~  233 (330)
T PRK09473        188 PTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVL  233 (330)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence            9877542      22222222 237789999999998877776663

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.52  E-value=3.1e-07  Score=77.77  Aligned_cols=140  Identities=19%  Similarity=0.266  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCCH--HHHH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPSI--TKIQ  226 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~~--~~~~  226 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+.......   |+            .....++++.+..  ..+.
T Consensus        22 ~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~   99 (207)
T cd03369          22 PVLKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIR   99 (207)
T ss_pred             ccccCceEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHH
Confidence            35666666666777  9999999999999999999876432211   00            0011223332211  0111


Q ss_pred             H-----------HHHHHhCCC-CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEE
Q 046889          227 D-----------EIAGWLGIK-ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFL  287 (333)
Q Consensus       227 ~-----------~i~~~l~~~-~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vi  287 (333)
                      +           .+...+... .....+ .+...-.+.+.+..++-+++||++.+..|..      .+..... .|..+|
T Consensus       100 ~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii  178 (207)
T cd03369         100 SNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTIL  178 (207)
T ss_pred             HHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEE
Confidence            1           111222211 111222 3445566888888899999999998764422      2222222 377899


Q ss_pred             EeeCChHHHhhcccceEecC
Q 046889          288 LTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       288 vTTr~~~v~~~~~~~~~~l~  307 (333)
                      ++||+...+.. +++.+.+.
T Consensus       179 i~th~~~~~~~-~d~v~~l~  197 (207)
T cd03369         179 TIAHRLRTIID-YDKILVMD  197 (207)
T ss_pred             EEeCCHHHHhh-CCEEEEEE
Confidence            99999988765 45554443

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.52  E-value=1.3e-07  Score=91.60  Aligned_cols=141  Identities=11%  Similarity=0.172  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC----------CCe--------EEEEEeCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM----------FDE--------VAMAVVSQT  219 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~----------f~~--------~~wv~v~~~  219 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+.+...+      .+.          +..        .....+.|.
T Consensus        23 ~~l~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~  100 (529)
T PRK15134         23 TVVNDVSLQIEAGE--TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQE  100 (529)
T ss_pred             eeeeceEEEEeCCC--EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecC
Confidence            45677777777788  9999999999999999999887642      110          000        012233333


Q ss_pred             CC--------HH-------------------HHHHHHHHHhCCCC--------CCCCC-HHHHHHHHHHHHccCceEEEE
Q 046889          220 PS--------IT-------------------KIQDEIAGWLGIKE--------LPDND-ELVRASLLCKRIEKQRVLVIL  263 (333)
Q Consensus       220 ~~--------~~-------------------~~~~~i~~~l~~~~--------~~~~~-~~~~~~~l~~~l~~k~~LlVl  263 (333)
                      +.        ..                   .....+++.+++..        ....+ .+.....+.+.|..++-+|+|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llll  180 (529)
T PRK15134        101 PMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA  180 (529)
T ss_pred             chhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            21        00                   11223444455521        01112 344566788888899999999


Q ss_pred             eCCCCchhhh------hccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          264 DDLWVQIELD------RVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       264 Ddv~~~~~~~------~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      |++.+..|..      .+...... .|..||++||+.+.+..++++.+.|
T Consensus       181 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l  230 (529)
T PRK15134        181 DEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVM  230 (529)
T ss_pred             cCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence            9998875422      22222222 3678999999999887777766444

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.52  E-value=2.6e-07  Score=80.64  Aligned_cols=140  Identities=14%  Similarity=0.211  Sum_probs=79.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hc--CCC--------------eEEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KK--MFD--------------EVAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~--~f~--------------~~~wv~v~~~~~  221 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+      .+  .++              ......+++.+.
T Consensus        17 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~   94 (250)
T PRK14262         17 KAVKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT   94 (250)
T ss_pred             eeEeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence            34556666666777  9999999999999999999975431      11  000              001122333221


Q ss_pred             H--HHHH----------------------HHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 I--TKIQ----------------------DEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 ~--~~~~----------------------~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                      .  ..+.                      ...++.++...         ....+ .+.....+...+..++-+++||++.
T Consensus        95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~  174 (250)
T PRK14262         95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT  174 (250)
T ss_pred             cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence            0  0111                      11222223210         01111 2334556778888899999999998


Q ss_pred             Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|..      .+...... +..||++||+.+.+..++++.+.+
T Consensus       175 ~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l  218 (250)
T PRK14262        175 SALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFM  218 (250)
T ss_pred             cccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEE
Confidence            764422      22222222 568999999999766666665433

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.52  E-value=7.7e-07  Score=76.94  Aligned_cols=138  Identities=17%  Similarity=0.197  Sum_probs=78.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH--HHH--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI--TKI--  225 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~--~~~--  225 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   |+.            ....++.+.+..  ..+  
T Consensus        16 ~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~   93 (236)
T cd03253          16 VLKDVSFTIPAGK--KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGY   93 (236)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHH
Confidence            4445555555677  9999999999999999999977543211   100            001222322210  001  


Q ss_pred             -------------HHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          226 -------------QDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       226 -------------~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                                   ....+...+..                .....+ .+...-.+.+.|..++-+++||++.+..|    
T Consensus        94 nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~  173 (236)
T cd03253          94 NIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE  173 (236)
T ss_pred             HHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence                         11111111110                001122 33445668888889999999999987644    


Q ss_pred             --hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                        +..+...... |..||++||+...... +++.+.+
T Consensus       174 ~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l  208 (236)
T cd03253         174 REIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVL  208 (236)
T ss_pred             HHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEE
Confidence              2222223334 7789999999988765 5555444

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.52  E-value=1.6e-06  Score=86.14  Aligned_cols=164  Identities=12%  Similarity=0.121  Sum_probs=90.4

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCceE-EEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVSI-IGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..++.|...+..+++.- +.++|+.|+||||+|+.+............      . .+..-.....+.
T Consensus        11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~------~-pCg~C~sC~~i~   83 (944)
T PRK14949         11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA------T-PCGVCSSCVEIA   83 (944)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC------C-CCCCchHHHHHh
Confidence            34455678999999999999988876544 589999999999999999987642211100      0 000000001111


Q ss_pred             HHhC-----CCCCCCCCHHHH---HHHHH-HHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-HH
Q 046889          231 GWLG-----IKELPDNDELVR---ASLLC-KRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-AC  296 (333)
Q Consensus       231 ~~l~-----~~~~~~~~~~~~---~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v~  296 (333)
                      ....     .........+..   ...+. .-..+++.++|||++...  ..++.+.  +..+...+++|++|.+.. +.
T Consensus        84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl  163 (944)
T PRK14949         84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP  163 (944)
T ss_pred             cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence            1000     000000111111   11111 112356779999998754  3334431  222233566666665543 33


Q ss_pred             hhcc--cceEecCCCCHHHHHHHHHhhc
Q 046889          297 NQMQ--AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       297 ~~~~--~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..+-  ...|++++|+.++....+.+.+
T Consensus       164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il  191 (944)
T PRK14949        164 VTVLSRCLQFNLKSLTQDEIGTQLNHIL  191 (944)
T ss_pred             HHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence            2322  2339999999999998888754

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.52  E-value=2.4e-07  Score=80.91  Aligned_cols=140  Identities=9%  Similarity=0.195  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hc--CCC--------------eEEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KK--MFD--------------EVAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~--~f~--------------~~~wv~v~~~~~  221 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+....      .+  .++              .....++++.+.
T Consensus        17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~   94 (250)
T PRK14240         17 QALKKINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN   94 (250)
T ss_pred             eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence            34555666666777  9999999999999999999875321      11  000              011223333321


Q ss_pred             H--HHHH----------------------HHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 I--TKIQ----------------------DEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 ~--~~~~----------------------~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                      .  ..+.                      ..+++.++..         .....+ .+.....+.+.+..++-+++||++.
T Consensus        95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~  174 (250)
T PRK14240         95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT  174 (250)
T ss_pred             cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            1  1111                      1122222221         011122 2344556778888889999999998


Q ss_pred             Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|.      ..+..... .+..||++||+.+.+..++++.+.+
T Consensus       175 ~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l  218 (250)
T PRK14240        175 SALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTAFF  218 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEEEE
Confidence            76442      22222222 2667999999999877766666444

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.52  E-value=2.1e-07  Score=81.39  Aligned_cols=137  Identities=13%  Similarity=0.225  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH--h----hcC--CC--------------eEEEEEeCCCC--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK--E----KKM--FD--------------EVAMAVVSQTP--  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~--~----~~~--f~--------------~~~wv~v~~~~--  220 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...  +    .+.  |+              ......+++.+  
T Consensus        19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~   96 (252)
T PRK14256         19 AVKDVSMDFPENS--VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP   96 (252)
T ss_pred             EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence            4555555566777  899999999999999999998743  1    110  00              00112233321  


Q ss_pred             ----CHH-------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          221 ----SIT-------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       221 ----~~~-------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                          +..                   .....+++.+++..         ....+ .+.....+.+.+..++-+++||++.
T Consensus        97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~  176 (252)
T PRK14256         97 FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPA  176 (252)
T ss_pred             CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                110                   11223344444321         11122 3344556788888889999999998


Q ss_pred             Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      +..|..      .+...... +..||++||+......++++.+
T Consensus       177 ~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~  218 (252)
T PRK14256        177 SALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTA  218 (252)
T ss_pred             ccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEE
Confidence            764422      22122222 4579999999988776666653

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.51  E-value=9.2e-07  Score=71.87  Aligned_cols=143  Identities=15%  Similarity=0.286  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-------------------CCCe---EEEEEeCCCC-
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-------------------MFDE---VAMAVVSQTP-  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~f~~---~~wv~v~~~~-  220 (333)
                      ..++++...+.+++  .+.+.||+|+|||||.+.+.+...+..                   -|+.   .-|.++-.+. 
T Consensus        19 ~~le~vsL~ia~ge--~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNva   96 (259)
T COG4525          19 SALEDVSLTIASGE--LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVA   96 (259)
T ss_pred             hhhhccceeecCCC--EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHH
Confidence            46677777777888  899999999999999999987654322                   1111   1133322211 


Q ss_pred             -----------CHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccC
Q 046889          221 -----------SITKIQDEIAGWLGIKELPDN------DELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGI  277 (333)
Q Consensus       221 -----------~~~~~~~~i~~~l~~~~~~~~------~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~  277 (333)
                                 .-..+..+++...++.+....      .-..+...+.+.|.-.+-+|+||++....|      ...+.+
T Consensus        97 fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLl  176 (259)
T COG4525          97 FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL  176 (259)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHH
Confidence                       112345566666777543332      234566779999999999999999875532      222222


Q ss_pred             CC-CCCCcEEEEeeCChHHHhhcccceEecCC
Q 046889          278 PY-GNDGCKFLLTSRSRAACNQMQAHIVDVRT  308 (333)
Q Consensus       278 ~~-~~~g~~vivTTr~~~v~~~~~~~~~~l~~  308 (333)
                      .. ...|..++++||+.+.|.-+.+..+.|.|
T Consensus       177 dlw~~tgk~~lliTH~ieEAlflatrLvvlsp  208 (259)
T COG4525         177 DLWQETGKQVLLITHDIEEALFLATRLVVLSP  208 (259)
T ss_pred             HHHHHhCCeEEEEeccHHHHHhhhheeEEecC
Confidence            11 23377799999999988777776654443

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1.9e-07  Score=82.53  Aligned_cols=144  Identities=12%  Similarity=0.205  Sum_probs=85.4

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCC
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQ  218 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~  218 (333)
                      +....++.+...+..++  +++|+|++|+|||||++.+.+....      .+.  |+              .....++++
T Consensus        31 ~~~~~l~~vs~~i~~Ge--~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q  108 (274)
T PRK14265         31 GGFLALVDVHLKIPAKK--IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQ  108 (274)
T ss_pred             CCeEEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEcc
Confidence            33345667777777778  9999999999999999999865321      110  00              001122333


Q ss_pred             CCC-----HHH-----------------HHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889          219 TPS-----ITK-----------------IQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDL  266 (333)
Q Consensus       219 ~~~-----~~~-----------------~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv  266 (333)
                      .+.     +.+                 .....++.++..         .....+ .+.....+.+.|..++-+++||++
T Consensus       109 ~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP  188 (274)
T PRK14265        109 RPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP  188 (274)
T ss_pred             CCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence            321     110                 111223333321         011122 344456688888889999999999


Q ss_pred             CCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          267 WVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       267 ~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .+..|      +..+...... +..||++||+......++++.+.|.
T Consensus       189 t~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~  234 (274)
T PRK14265        189 CSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFN  234 (274)
T ss_pred             cccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            87744      2222222233 5789999999999888887776553

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.51  E-value=1.9e-07  Score=90.83  Aligned_cols=143  Identities=20%  Similarity=0.262  Sum_probs=88.8

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-EEEEEeCCCC-------CHH-----
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-VAMAVVSQTP-------SIT-----  223 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-~~wv~v~~~~-------~~~-----  223 (333)
                      ++....++.+...+..|+  +++|+|+||+|||||++.+++...+...   +.. ....++++..       ++.     
T Consensus       334 ~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~  411 (556)
T PRK11819        334 FGDRLLIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISG  411 (556)
T ss_pred             ECCeeeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHh
Confidence            344456777777777788  9999999999999999999977543211   111 0112333321       111     


Q ss_pred             -----------HHHHHHHHHhCCCC-C-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC
Q 046889          224 -----------KIQDEIAGWLGIKE-L-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY  279 (333)
Q Consensus       224 -----------~~~~~i~~~l~~~~-~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~  279 (333)
                                 ...+.++..+++.. .     ...+ .+.....+...+..++-+++||++.+..|..      .+...+
T Consensus       412 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  491 (556)
T PRK11819        412 GLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF  491 (556)
T ss_pred             hcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC
Confidence                       11234556666531 1     1112 2344557888888999999999998775422      222222


Q ss_pred             CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          280 GNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       280 ~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                        .| .||++||+...+..+++..+.++
T Consensus       492 --~~-tvi~vtHd~~~~~~~~d~i~~l~  516 (556)
T PRK11819        492 --PG-CAVVISHDRWFLDRIATHILAFE  516 (556)
T ss_pred             --CC-eEEEEECCHHHHHHhCCEEEEEE
Confidence              24 59999999998888777775554

>TIGR00767 rho transcription termination factor Rho

Probab=98.51  E-value=2.7e-07  Score=83.94  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=61.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCHH--H---HH
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT--PSITKIQDEIAGWLGIKELPDNDEL--V---RA  247 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~---~~  247 (333)
                      .|+  .++|+|++|+|||||++.+++..... +|+..+|+.+.+.  .++.++++.++..+-..........  .   ..
T Consensus       167 ~Gq--~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v  243 (415)
T TIGR00767       167 KGQ--RGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV  243 (415)
T ss_pred             CCC--EEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence            455  89999999999999999999987654 8999999999866  5778888888443322222211111  1   11


Q ss_pred             HHHHHH--HccCceEEEEeCCCC
Q 046889          248 SLLCKR--IEKQRVLVILDDLWV  268 (333)
Q Consensus       248 ~~l~~~--l~~k~~LlVlDdv~~  268 (333)
                      ....+.  -.+++.+|++|++..
T Consensus       244 ~e~Ae~~~~~GkdVVLlIDEitR  266 (415)
T TIGR00767       244 IEKAKRLVEHKKDVVILLDSITR  266 (415)
T ss_pred             HHHHHHHHHcCCCeEEEEEChhH
Confidence            112222  246899999999863

Members of this family differ in the specificity of RNA binding.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.51  E-value=2.5e-07  Score=80.65  Aligned_cols=140  Identities=11%  Similarity=0.178  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------c--CCCe-------------EEEEEeCCCCCH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------K--MFDE-------------VAMAVVSQTPSI  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~--~f~~-------------~~wv~v~~~~~~  222 (333)
                      ..++.+...+.+++  +++|+|++|+|||||++.+.+...+.      +  .++.             ....++++.+..
T Consensus        17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~   94 (249)
T PRK14253         17 QALKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP   94 (249)
T ss_pred             eeeecceEEecCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence            35666666666777  99999999999999999998775421      1  0000             012223333210


Q ss_pred             --HHHHH----------------------HHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          223 --TKIQD----------------------EIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       223 --~~~~~----------------------~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                        ..+.+                      ..++.++..         .....+ .+.....|.+.+..++-+++||++.+
T Consensus        95 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~  174 (249)
T PRK14253         95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTS  174 (249)
T ss_pred             CcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence              01111                      112222221         001111 23345567788888899999999987


Q ss_pred             chhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          269 QIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       269 ~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|.      ..+...... +..||++||+......++++.+.+
T Consensus       175 ~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l  217 (249)
T PRK14253        175 ALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFF  217 (249)
T ss_pred             cCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEE
Confidence            6442      222222222 467999999999877777766433

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=1.8e-07  Score=84.56  Aligned_cols=141  Identities=13%  Similarity=0.173  Sum_probs=83.0

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc------CCCeEEEEEeCCC------CCHH
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK------MFDEVAMAVVSQT------PSIT  223 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~------~f~~~~wv~v~~~------~~~~  223 (333)
                      ...|.|....+..+.+-+.-+.  .|+||||+|+|||||+..+.+...+..      |--.+-|+.-...      .++.
T Consensus       593 tFgy~gqkpLFkkldFGiDmdS--RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~  670 (807)
T KOG0066|consen  593 TFGYPGQKPLFKKLDFGIDMDS--RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPV  670 (807)
T ss_pred             cccCCCCCchhhcccccccccc--eeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHH
Confidence            4455677888888776654444  799999999999999999987764432      2223445532111      1111


Q ss_pred             HH-----------HHHHHHHhCCCC------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cCCCCCC
Q 046889          224 KI-----------QDEIAGWLGIKE------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GIPYGND  282 (333)
Q Consensus       224 ~~-----------~~~i~~~l~~~~------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~~~~~  282 (333)
                      ..           .+.-+..+|+..      ....+ .......+.+.-.+.+-+||||++.+..++..+   .-.+...
T Consensus       671 EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney  750 (807)
T KOG0066|consen  671 EYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY  750 (807)
T ss_pred             HHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc
Confidence            11           112222333321      11111 222344566666678899999999988776555   3233333


Q ss_pred             CcEEEEeeCChHHHhh
Q 046889          283 GCKFLLTSRSRAACNQ  298 (333)
Q Consensus       283 g~~vivTTr~~~v~~~  298 (333)
                      ..-||++||+..+...
T Consensus       751 ~GgVi~VsHDeRLi~e  766 (807)
T KOG0066|consen  751 NGGVIMVSHDERLIVE  766 (807)
T ss_pred             cCcEEEEecccceeee
Confidence            3348999999876443

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.50  E-value=3e-07  Score=79.54  Aligned_cols=138  Identities=18%  Similarity=0.258  Sum_probs=77.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI-------  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~-------  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   |+.            ....++++.+..       
T Consensus        17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~   94 (237)
T cd03252          17 ILDNISLRIKPGE--VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD   94 (237)
T ss_pred             ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence            4455555556677  9999999999999999999876532210   000            011222332210       


Q ss_pred             -----------HHHH--------HHHHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889          223 -----------TKIQ--------DEIAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---  272 (333)
Q Consensus       223 -----------~~~~--------~~i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---  272 (333)
                                 ..+.        ..++..+  +..     .....+ .+.....+.+.+..++-+++||++.+..|.   
T Consensus        95 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~  174 (237)
T cd03252          95 NIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE  174 (237)
T ss_pred             HhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence                       0110        0111111  110     011122 233455677888889999999999877442   


Q ss_pred             ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         ..+..... .|..||++||+...+.. ++..+.+
T Consensus       175 ~~l~~~l~~~~-~~~tiii~sH~~~~~~~-~d~v~~l  209 (237)
T cd03252         175 HAIMRNMHDIC-AGRTVIIIAHRLSTVKN-ADRIIVM  209 (237)
T ss_pred             HHHHHHHHHhc-CCCEEEEEeCCHHHHHh-CCEEEEE
Confidence               22222222 37789999999998754 5555444

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.50  E-value=1.6e-07  Score=90.84  Aligned_cols=142  Identities=18%  Similarity=0.203  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CC--C-----------------eEEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MF--D-----------------EVAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f--~-----------------~~~wv~v~~~~~  221 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+.+..++..   .|  .                 .....++++.+.
T Consensus       298 ~il~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~  375 (520)
T TIGR03269       298 KAVDNVSLEVKEGE--IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD  375 (520)
T ss_pred             eEEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence            35666666666777  999999999999999999987653211   01  0                 000123333321


Q ss_pred             ------HHH-----------------HHHHHHHHhCCCC-----CCCC-----C-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 ------ITK-----------------IQDEIAGWLGIKE-----LPDN-----D-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 ------~~~-----------------~~~~i~~~l~~~~-----~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                            +.+                 ....+++.+++..     ....     + -+..+-.+...|..++-+|+||++.
T Consensus       376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt  455 (520)
T TIGR03269       376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT  455 (520)
T ss_pred             cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                  111                 1223455566632     1111     1 2344566888888899999999998


Q ss_pred             Cchhh------hhccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889          268 VQIEL------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       268 ~~~~~------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      +..|.      ..+..... ..|..||++||+...+..++++.+.+.
T Consensus       456 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~  502 (520)
T TIGR03269       456 GTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR  502 (520)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence            77542      22222222 237789999999998888777775553

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.50  E-value=6e-08  Score=85.55  Aligned_cols=141  Identities=15%  Similarity=0.184  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh---------c--CCCe------------EEEEEeCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK---------K--MFDE------------VAMAVVSQTP  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---------~--~f~~------------~~wv~v~~~~  220 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+.         +  .|+.            .....+++.+
T Consensus        15 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~   92 (272)
T PRK13547         15 AILRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA   92 (272)
T ss_pred             eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence            35566666666777  99999999999999999998765432         1  0000            0011222221


Q ss_pred             ------CHH----------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHc---------cC
Q 046889          221 ------SIT----------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIE---------KQ  257 (333)
Q Consensus       221 ------~~~----------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~---------~k  257 (333)
                            +..                      .....+++.+++...     ...+ .+.....+...+.         .+
T Consensus        93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~  172 (272)
T PRK13547         93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP  172 (272)
T ss_pred             CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence                  110                      112334444544311     1112 2334455667776         48


Q ss_pred             ceEEEEeCCCCchh------hhhccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          258 RVLVILDDLWVQIE------LDRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       258 ~~LlVlDdv~~~~~------~~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +-+++||++.+..|      +..+...... .|..||++||+......++++.+.|
T Consensus       173 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l  228 (272)
T PRK13547        173 PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML  228 (272)
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            89999999987644      2222222222 2778999999998876666665333

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.50  E-value=2.5e-07  Score=77.99  Aligned_cols=140  Identities=9%  Similarity=0.072  Sum_probs=75.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH---hhcC---C------------CeEEEEEeCCCCC--H-H
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK---EKKM---F------------DEVAMAVVSQTPS--I-T  223 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~---~~~~---f------------~~~~wv~v~~~~~--~-~  223 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...   +...   +            ...+ ..+++...  . .
T Consensus        22 il~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~   98 (202)
T cd03233          22 ILKDFSGVVKPGE--MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEI-IYVSEEDVHFPTL   98 (202)
T ss_pred             eeeeEEEEECCCc--EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceE-EEEecccccCCCC
Confidence            4445555555676  999999999999999999998765   2110   0            0011 12232211  0 1


Q ss_pred             HHHHHHHHH--hCCC-CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCC-CCCcEEE-EeeC
Q 046889          224 KIQDEIAGW--LGIK-ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYG-NDGCKFL-LTSR  291 (333)
Q Consensus       224 ~~~~~i~~~--l~~~-~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~-~~g~~vi-vTTr  291 (333)
                      .+.+.+.-.  .... .....+ .+...-.+.+.+..++-+++||++.+..|      +..+..... ..+..+| +|+|
T Consensus        99 tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h  178 (202)
T cd03233          99 TVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQ  178 (202)
T ss_pred             cHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence            222222211  1111 112223 34455578888888999999999987644      222222222 2244444 4566


Q ss_pred             ChHHHhhcccceEecC
Q 046889          292 SRAACNQMQAHIVDVR  307 (333)
Q Consensus       292 ~~~v~~~~~~~~~~l~  307 (333)
                      ..+.+..++++.+.+.
T Consensus       179 ~~~~~~~~~d~i~~l~  194 (202)
T cd03233         179 ASDEIYDLFDKVLVLY  194 (202)
T ss_pred             CHHHHHHhCCeEEEEE
Confidence            6555555566554443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=4.5e-07  Score=79.11  Aligned_cols=139  Identities=11%  Similarity=0.194  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH---Hh---hcC--CCe--------------EEEEEeCCCC--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA---KE---KKM--FDE--------------VAMAVVSQTP--  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~---~~---~~~--f~~--------------~~wv~v~~~~--  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+..   ..   .+.  ++.              ....++++.+  
T Consensus        18 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~   95 (250)
T PRK14245         18 ALKGISMEIEEKS--VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP   95 (250)
T ss_pred             EEeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence            4455555566677  99999999999999999997641   11   110  000              0012222221  


Q ss_pred             ---CHH-------------------HHHHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          221 ---SIT-------------------KIQDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       221 ---~~~-------------------~~~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                         +..                   .....+++.+++..         ....+ .+.....+.+.+..++-+++||++.+
T Consensus        96 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~  175 (250)
T PRK14245         96 FPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS  175 (250)
T ss_pred             CcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence               110                   11223344444421         11122 23445568888888999999999987


Q ss_pred             chh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          269 QIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       269 ~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|      +..+..... .+..||++||+...+..++++.+.+
T Consensus       176 ~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l  218 (250)
T PRK14245        176 ALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFF  218 (250)
T ss_pred             cCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEE
Confidence            644      222222222 2577999999999877766666444

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.49  E-value=3.6e-07  Score=78.17  Aligned_cols=140  Identities=16%  Similarity=0.241  Sum_probs=79.7

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI------  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~------  222 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+...   |+.            .....+.+.+..      
T Consensus        18 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~   95 (221)
T cd03244          18 PVLKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIR   95 (221)
T ss_pred             ccccceEEEECCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHH
Confidence            35666666677777  9999999999999999999876433211   000            001122222110      


Q ss_pred             ----------HHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889          223 ----------TKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---  272 (333)
Q Consensus       223 ----------~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---  272 (333)
                                ..-....++.++..                .....+ .+.....+.+.+..++-+++||++.+..+.   
T Consensus        96 enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~  175 (221)
T cd03244          96 SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD  175 (221)
T ss_pred             HHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence                      01111222222221                111122 234456688888889999999999876442   


Q ss_pred             ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                         ..+..... .+..||++||+...... +++.+.+.
T Consensus       176 ~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~i~~l~  211 (221)
T cd03244         176 ALIQKTIREAF-KDCTVLTIAHRLDTIID-SDRILVLD  211 (221)
T ss_pred             HHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CCEEEEEE
Confidence               22222222 25679999999988765 45555443

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.49  E-value=6.1e-07  Score=78.94  Aligned_cols=144  Identities=11%  Similarity=0.170  Sum_probs=82.4

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCC
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQ  218 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~  218 (333)
                      +....++.+...+..++  +++|+|++|+|||||++.+.+....      .+.  ++              ......+++
T Consensus        21 ~~~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q   98 (264)
T PRK14243         21 GSFLAVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQ   98 (264)
T ss_pred             CCEEEeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEcc
Confidence            33345666776677777  9999999999999999999875431      110  00              001122333


Q ss_pred             CCCH--HHHHH--------------------HHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889          219 TPSI--TKIQD--------------------EIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDL  266 (333)
Q Consensus       219 ~~~~--~~~~~--------------------~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv  266 (333)
                      .+..  ..+.+                    .++..++..         .....+ .+.....+.+.+..++-+++||++
T Consensus        99 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP  178 (264)
T PRK14243         99 KPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP  178 (264)
T ss_pred             CCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            2210  01111                    122222221         001111 234455677778888899999999


Q ss_pred             CCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          267 WVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       267 ~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .+..|      +..+...... +..||++||+.+.+..++++.+.++
T Consensus       179 t~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~  224 (264)
T PRK14243        179 CSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFN  224 (264)
T ss_pred             CccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence            87644      2222222222 4579999999998887777775543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.49  E-value=2e-07  Score=91.82  Aligned_cols=141  Identities=10%  Similarity=0.204  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------------------EEEE
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------------------VAMA  214 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------------------~~wv  214 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+...+...   +..                          .-..
T Consensus        30 ~~l~~is~~v~~Ge--~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig  107 (623)
T PRK10261         30 AAVRNLSFSLQRGE--TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMA  107 (623)
T ss_pred             eEEEeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEE
Confidence            45667777777787  9999999999999999999977542110   100                          0012


Q ss_pred             EeCCCC--------CHHH-------------------HHHHHHHHhCCCC--------CCCCC-HHHHHHHHHHHHccCc
Q 046889          215 VVSQTP--------SITK-------------------IQDEIAGWLGIKE--------LPDND-ELVRASLLCKRIEKQR  258 (333)
Q Consensus       215 ~v~~~~--------~~~~-------------------~~~~i~~~l~~~~--------~~~~~-~~~~~~~l~~~l~~k~  258 (333)
                      .+.|.+        ++.+                   -..++++.+++..        ....+ .+.....|...|..++
T Consensus       108 ~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P  187 (623)
T PRK10261        108 MIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRP  187 (623)
T ss_pred             EEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCC
Confidence            233321        1111                   1223455566631        11122 3445667888899999


Q ss_pred             eEEEEeCCCCchhhhh------ccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          259 VLVILDDLWVQIELDR------VGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       259 ~LlVlDdv~~~~~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      -+|+||++.+..|...      +...+. ..|..||++||+...+..++++.+.|
T Consensus       188 ~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl  242 (623)
T PRK10261        188 AVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM  242 (623)
T ss_pred             CEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence            9999999987755322      222222 23778999999999888877777444

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=3e-07  Score=80.76  Aligned_cols=142  Identities=11%  Similarity=0.171  Sum_probs=84.7

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh------c-------CC-----C----eEEEEEeCCCC-
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK------K-------MF-----D----EVAMAVVSQTP-  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------~-------~f-----~----~~~wv~v~~~~-  220 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+.....      +       ..     .    ......+++.+ 
T Consensus        21 ~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~   98 (261)
T PRK14258         21 KILEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN   98 (261)
T ss_pred             eEeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence            35566666666777  99999999999999999999876531      1       00     0    00112223321 


Q ss_pred             ----CHHH-------------------HHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          221 ----SITK-------------------IQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       221 ----~~~~-------------------~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                          +..+                   ....+++.+++.         .....+ .+.....+.+.+..++-+++||++.
T Consensus        99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~  178 (261)
T PRK14258         99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC  178 (261)
T ss_pred             cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                1110                   112223333321         011122 3344556778888889999999998


Q ss_pred             Cchhhhh------ccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889          268 VQIELDR------VGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       268 ~~~~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      +..|...      +...+. ..|..||++||+...+..++++.+.++
T Consensus       179 ~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~  225 (261)
T PRK14258        179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK  225 (261)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence            7754322      222221 237789999999999888877775554

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.49  E-value=4.6e-07  Score=80.05  Aligned_cols=140  Identities=12%  Similarity=0.249  Sum_probs=79.5

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-----h-hcC--CCe--------------EEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-----E-KKM--FDE--------------VAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-----~-~~~--f~~--------------~~wv~v~~~~~  221 (333)
                      ..++.+...+..|+  +++|+|++|+|||||++.+.+...     + .+.  ++.              ....++++.+.
T Consensus        38 ~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~  115 (271)
T PRK14238         38 HALKNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN  115 (271)
T ss_pred             ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence            45566666666777  999999999999999999998753     1 110  100              01223333321


Q ss_pred             H--HHHHHHH----------------------HHHhCC----C-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 I--TKIQDEI----------------------AGWLGI----K-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 ~--~~~~~~i----------------------~~~l~~----~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                      .  ..+.+++                      +..++.    .     .....+ .+.....+.+.|..++-+++||++.
T Consensus       116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt  195 (271)
T PRK14238        116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT  195 (271)
T ss_pred             cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            1  1111111                      111110    0     001111 2334455777777888899999998


Q ss_pred             Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|      +..+...... +..||++||+...+..++++.+.+
T Consensus       196 ~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l  239 (271)
T PRK14238        196 SALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFF  239 (271)
T ss_pred             CcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEE
Confidence            7644      2222222222 577999999999877777666433

>PRK04195 replication factor C large subunit; Provisional

Probab=98.49  E-value=1.1e-06  Score=83.85  Aligned_cols=151  Identities=12%  Similarity=0.139  Sum_probs=88.9

Q ss_pred             cccccccccchHHHHHHHHHHhhc---C-CceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKD---E-KVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQD  227 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~---~-~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~  227 (333)
                      .|.....++|++...+.|..|+..   + ..+.+.|+||.|+||||+|+.+++...    +.. +-+..+.... ...+.
T Consensus         9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~-~~~i~   82 (482)
T PRK04195          9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRT-ADVIE   82 (482)
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEccccccc-HHHHH
Confidence            344566789999999999888863   2 156899999999999999999988763    222 2222332222 22233


Q ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHH-h-hc
Q 046889          228 EIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAAC-N-QM  299 (333)
Q Consensus       228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~-~-~~  299 (333)
                      .++......              ......++.+|||||+.....      +..+.-.....++.||+|+.+..-. . .+
T Consensus        83 ~~i~~~~~~--------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~L  148 (482)
T PRK04195         83 RVAGEAATS--------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLREL  148 (482)
T ss_pred             HHHHHhhcc--------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhH
Confidence            333222110              001113678999999975421      2333111223355677777654321 1 12


Q ss_pred             cc--ceEecCCCCHHHHHHHHHhhc
Q 046889          300 QA--HIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       300 ~~--~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..  ..+.+.+++.++....+.+.+
T Consensus       149 rsr~~~I~f~~~~~~~i~~~L~~i~  173 (482)
T PRK04195        149 RNACLMIEFKRLSTRSIVPVLKRIC  173 (482)
T ss_pred             hccceEEEecCCCHHHHHHHHHHHH
Confidence            22  238899999988888877655

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.49  E-value=2.4e-07  Score=81.64  Aligned_cols=140  Identities=11%  Similarity=0.173  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~~~~  221 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+++...+      .+.  ++              .....++++.+.
T Consensus        34 ~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~  111 (267)
T PRK14237         34 EAIKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN  111 (267)
T ss_pred             eeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence            45566666666777  9999999999999999999987531      110  00              001223333321


Q ss_pred             H--HHH----------------------HHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 I--TKI----------------------QDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 ~--~~~----------------------~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                      .  ..+                      ..++++.+++.         .....+ .+.....+.+.+..++-+++||++.
T Consensus       112 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt  191 (267)
T PRK14237        112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPA  191 (267)
T ss_pred             cccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            0  011                      11223333331         011112 2344556788888899999999998


Q ss_pred             Cchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|.      ..+..... .+..||++||+.+....++++.+.|
T Consensus       192 ~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l  235 (267)
T PRK14237        192 SALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFF  235 (267)
T ss_pred             ccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEE
Confidence            76442      22222222 2577999999998876666665433

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.48  E-value=2.8e-07  Score=80.50  Aligned_cols=139  Identities=12%  Similarity=0.190  Sum_probs=79.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hc--CCC--------------eEEEEEeCCCCC-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KK--MFD--------------EVAMAVVSQTPS-  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~--~f~--------------~~~wv~v~~~~~-  221 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+      .+  .|+              .....++++.+. 
T Consensus        19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~   96 (251)
T PRK14270         19 ALNDINLPIYENK--ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP   96 (251)
T ss_pred             eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence            4555555566777  9999999999999999999976431      11  010              001122233221 


Q ss_pred             ----HHH-------------------HHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          222 ----ITK-------------------IQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       222 ----~~~-------------------~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                          ..+                   ....+++.+++.         .....+ .+.....+...+..++-+++||++.+
T Consensus        97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~  176 (251)
T PRK14270         97 FPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS  176 (251)
T ss_pred             CCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence                110                   011233344321         111112 23345567777888889999999987


Q ss_pred             chhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          269 QIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       269 ~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|..      .+...... +..||++||+.+.+..++++.+.+
T Consensus       177 ~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l  219 (251)
T PRK14270        177 ALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFF  219 (251)
T ss_pred             cCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEE
Confidence            64422      22222222 467999999999877766666433

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.48  E-value=3.1e-07  Score=79.49  Aligned_cols=60  Identities=7%  Similarity=0.083  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          245 VRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .....+.+.+..++-+++||++.+..|      +..+..... .|..||++||+.+.+. .+++.+.+
T Consensus       145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l  210 (238)
T cd03249         145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAVL  210 (238)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEE
Confidence            345567788888889999999987644      222222223 4778999999998876 56665444

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.47  E-value=6.1e-07  Score=83.25  Aligned_cols=61  Identities=15%  Similarity=0.226  Sum_probs=46.1

Q ss_pred             HHHHHHHHHccCceEEEEeCCCCchhhhhcc-----CCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          246 RASLLCKRIEKQRVLVILDDLWVQIELDRVG-----IPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       246 ~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~-----~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .+..|.+.|-.++.||+|||+.+..|++...     +...+.+ .++|++|+++..+.++++++++.
T Consensus       228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~  293 (614)
T KOG0927|consen  228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLD  293 (614)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheec
Confidence            4557888888999999999999998866651     2111212 69999999999999888875553

>PLN03025 replication factor C subunit; Provisional

Probab=98.47  E-value=2.9e-06  Score=76.74  Aligned_cols=155  Identities=16%  Similarity=0.194  Sum_probs=88.7

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeE-EEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEV-AMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~-~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..++.|..++..++.+.+.++||.|+||||+|+.+.+...- ..|... .-+..+..... +.+++++
T Consensus         8 rP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~-~~vr~~i   85 (319)
T PLN03025          8 RPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGI-DVVRNKI   85 (319)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccH-HHHHHHH
Confidence            34456678899999999988887777667889999999999999999887632 122211 11111111111 1222222


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--h---hhhccCCCCCCCcEEEEeeCChH-HHhhccc--c
Q 046889          231 GWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--E---LDRVGIPYGNDGCKFLLTSRSRA-ACNQMQA--H  302 (333)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~---~~~l~~~~~~~g~~vivTTr~~~-v~~~~~~--~  302 (333)
                      +.+......             .-.++..+++|||+....  .   +... +......+++|+++.... +...+.+  .
T Consensus        86 ~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~-lE~~~~~t~~il~~n~~~~i~~~L~SRc~  151 (319)
T PLN03025         86 KMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRT-MEIYSNTTRFALACNTSSKIIEPIQSRCA  151 (319)
T ss_pred             HHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHH-HhcccCCceEEEEeCCccccchhHHHhhh
Confidence            221110000             001346799999987542  1   2222 122233566777775432 2222222  2


Q ss_pred             eEecCCCCHHHHHHHHHhhc
Q 046889          303 IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       303 ~~~l~~L~~~e~~~lf~~~a  322 (333)
                      .+.++++++++....+.+.+
T Consensus       152 ~i~f~~l~~~~l~~~L~~i~  171 (319)
T PLN03025        152 IVRFSRLSDQEILGRLMKVV  171 (319)
T ss_pred             cccCCCCCHHHHHHHHHHHH
Confidence            38999999999888887665

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.47  E-value=2.3e-07  Score=91.38  Aligned_cols=138  Identities=12%  Similarity=0.230  Sum_probs=85.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe---------------EEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE---------------VAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~---------------~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+..++..   .|..               ....++.|.+      
T Consensus       339 ~l~~vs~~i~~Ge--~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~  416 (623)
T PRK10261        339 AVEKVSFDLWPGE--TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP  416 (623)
T ss_pred             EEeeeEeEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence            4566666666777  999999999999999999987653211   0000               0112233331      


Q ss_pred             --CHH-------------------HHHHHHHHHhCCC-CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 --SIT-------------------KIQDEIAGWLGIK-EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 --~~~-------------------~~~~~i~~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                        ++.                   ....++++.+++. ..     ...+ -+.....|...|..++-|||+|++.+..|.
T Consensus       417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~  496 (623)
T PRK10261        417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV  496 (623)
T ss_pred             CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence              111                   1122455556653 11     1112 344566788888899999999999877542


Q ss_pred             ------hhccCCCC-CCCcEEEEeeCChHHHhhcccceE
Q 046889          273 ------DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       273 ------~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                            ..+..... ..|..||++||+...+..+++..+
T Consensus       497 ~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~  535 (623)
T PRK10261        497 SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVA  535 (623)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence                  22222222 237789999999998887777663

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.47  E-value=2.2e-06  Score=73.98  Aligned_cols=134  Identities=15%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDND  242 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~  242 (333)
                      ...+..+..+....+...+.|+||.|+|||+|++.+++.....  -....++.+.....   .                 
T Consensus        30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---~-----------------   87 (235)
T PRK08084         30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---F-----------------   87 (235)
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---h-----------------
Confidence            4455556555544444578999999999999999999876532  12334444322100   0                 


Q ss_pred             HHHHHHHHHHHHccCceEEEEeCCCCc---hhh----hhccCCCCCCC-cEEEEeeCChHH---------Hhhcccce-E
Q 046889          243 ELVRASLLCKRIEKQRVLVILDDLWVQ---IEL----DRVGIPYGNDG-CKFLLTSRSRAA---------CNQMQAHI-V  304 (333)
Q Consensus       243 ~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~----~~l~~~~~~~g-~~vivTTr~~~v---------~~~~~~~~-~  304 (333)
                      ..    .+.+.+.+ ..+|++||+...   ..|    ..+.......| .++|+||+....         ..++.... +
T Consensus        88 ~~----~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~  162 (235)
T PRK08084         88 VP----EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY  162 (235)
T ss_pred             hH----HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCcee
Confidence            00    11122211 248999999643   222    22222222234 479999986632         33444444 8


Q ss_pred             ecCCCCHHHHHHHHHhhcc
Q 046889          305 DVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       305 ~l~~L~~~e~~~lf~~~a~  323 (333)
                      .++++++++-.+++++++.
T Consensus       163 ~l~~~~~~~~~~~l~~~a~  181 (235)
T PRK08084        163 KLQPLSDEEKLQALQLRAR  181 (235)
T ss_pred             eecCCCHHHHHHHHHHHHH
Confidence            9999999999999887653

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.47  E-value=2.7e-07  Score=81.54  Aligned_cols=143  Identities=11%  Similarity=0.183  Sum_probs=82.6

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCC
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQ  218 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~  218 (333)
                      +....++.+...+..++  +++|+|++|+|||||++.+.+....      .+.  ++              .....++++
T Consensus        36 ~~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q  113 (272)
T PRK14236         36 GDKQALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQ  113 (272)
T ss_pred             CCeeEeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEec
Confidence            33345666666666777  9999999999999999999877431      110  00              011223333


Q ss_pred             CCCH--HHH----------------------HHHHHHHhCCCC---------CCCCC-HHHHHHHHHHHHccCceEEEEe
Q 046889          219 TPSI--TKI----------------------QDEIAGWLGIKE---------LPDND-ELVRASLLCKRIEKQRVLVILD  264 (333)
Q Consensus       219 ~~~~--~~~----------------------~~~i~~~l~~~~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlD  264 (333)
                      .+..  ..+                      ...+++.++...         ....+ .+.....+.+.+..++-+++||
T Consensus       114 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD  193 (272)
T PRK14236        114 RPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD  193 (272)
T ss_pred             CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            2210  011                      112223333210         01112 2344556778888899999999


Q ss_pred             CCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          265 DLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       265 dv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ++.+..|      +..+...... +..||++||+.+.+..++++.+.+
T Consensus       194 EPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l  240 (272)
T PRK14236        194 EPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFM  240 (272)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEE
Confidence            9987644      2222222222 567999999999877766666444

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.47  E-value=6e-07  Score=78.43  Aligned_cols=61  Identities=10%  Similarity=0.204  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          245 VRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .....+...+..++-+++||++.+..|      +..+...... +..||++||+.+....++++.+.+
T Consensus       154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l  220 (252)
T PRK14239        154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFF  220 (252)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEE
Confidence            345567777888889999999987644      2222222222 467999999998776666666444

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.47  E-value=4.7e-07  Score=79.91  Aligned_cols=138  Identities=17%  Similarity=0.246  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCe------------EEEEEeCCCCCH--------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDE------------VAMAVVSQTPSI--------  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~------------~~wv~v~~~~~~--------  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+.....+.  ++.            .....+++.+.+        
T Consensus        19 ~l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n   96 (275)
T cd03289          19 VLENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN   96 (275)
T ss_pred             ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence            5666666677788  9999999999999999999877542110  000            011223333311        


Q ss_pred             --------HHHHHHHHHHhCCCC----CC------------CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh----
Q 046889          223 --------TKIQDEIAGWLGIKE----LP------------DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD----  273 (333)
Q Consensus       223 --------~~~~~~i~~~l~~~~----~~------------~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----  273 (333)
                              ..-+...++.+++..    ..            ..+ .+.....+.+.+..++-+++||++.+..|..    
T Consensus        97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~  176 (275)
T cd03289          97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV  176 (275)
T ss_pred             hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHH
Confidence                    111223344444320    00            022 3445567888888899999999998775432    


Q ss_pred             --hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 --RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 --~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                        ...... ..++.||++||+.+.... +++.+.|
T Consensus       177 l~~~l~~~-~~~~tii~isH~~~~i~~-~dri~vl  209 (275)
T cd03289         177 IRKTLKQA-FADCTVILSEHRIEAMLE-CQRFLVI  209 (275)
T ss_pred             HHHHHHHh-cCCCEEEEEECCHHHHHh-CCEEEEe
Confidence              222222 237889999999987654 5555444

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK08727 hypothetical protein; Validated

Probab=98.47  E-value=2.3e-06  Score=73.75  Aligned_cols=140  Identities=14%  Similarity=0.161  Sum_probs=79.2

Q ss_pred             ccccch-HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 046889          157 YNFKSR-ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGI  235 (333)
Q Consensus       157 ~~~~gr-~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~  235 (333)
                      ..|++. ...+..+...........+.|+|+.|+|||.|++.+++.....+  ....++...+      ....+.     
T Consensus        19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~--~~~~y~~~~~------~~~~~~-----   85 (233)
T PRK08727         19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG--RSSAYLPLQA------AAGRLR-----   85 (233)
T ss_pred             hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEeHHH------hhhhHH-----
Confidence            344433 33444333333223334699999999999999999988765332  2344554221      111110     


Q ss_pred             CCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch---hhh----hccCCCCCCCcEEEEeeCChHH---------Hhhc
Q 046889          236 KELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI---ELD----RVGIPYGNDGCKFLLTSRSRAA---------CNQM  299 (333)
Q Consensus       236 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~----~l~~~~~~~g~~vivTTr~~~v---------~~~~  299 (333)
                                   ...+.+ .+..+||+||+....   .+.    .+.......|..+|+|++...-         ..++
T Consensus        86 -------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl  151 (233)
T PRK08727         86 -------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL  151 (233)
T ss_pred             -------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence                         111122 234589999986431   122    1211112336679999986432         2233


Q ss_pred             ccc-eEecCCCCHHHHHHHHHhhcc
Q 046889          300 QAH-IVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       300 ~~~-~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      ... .+.+++++.++-..++++++.
T Consensus       152 ~~~~~~~l~~~~~e~~~~iL~~~a~  176 (233)
T PRK08727        152 AQCIRIGLPVLDDVARAAVLRERAQ  176 (233)
T ss_pred             hcCceEEecCCCHHHHHHHHHHHHH
Confidence            333 389999999999999998764

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.46  E-value=6.9e-07  Score=77.13  Aligned_cols=138  Identities=17%  Similarity=0.189  Sum_probs=78.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-----H--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-----I--  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-----~--  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.            ....++++.+.     .  
T Consensus        17 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e   94 (234)
T cd03251          17 VLRDISLDIPAGE--TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE   94 (234)
T ss_pred             ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence            4455555566677  9999999999999999999877543211   000            00112222211     0  


Q ss_pred             -----------HHH--------HHHHHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889          223 -----------TKI--------QDEIAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---  272 (333)
Q Consensus       223 -----------~~~--------~~~i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---  272 (333)
                                 ..+        +...++.+  +..     .....+ .+.....+.+.+..++-+++||++.+..|.   
T Consensus        95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~  174 (234)
T cd03251          95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESE  174 (234)
T ss_pred             HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence                       000        01112222  111     011122 344566788888889999999999876442   


Q ss_pred             ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         ..+..... .+..||++||+...... +++.+.+
T Consensus       175 ~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~v~~l  209 (234)
T cd03251         175 RLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRIVVL  209 (234)
T ss_pred             HHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEEEe
Confidence               22222222 36789999999988765 5555444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.46  E-value=2.8e-07  Score=78.83  Aligned_cols=139  Identities=16%  Similarity=0.215  Sum_probs=81.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------  220 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.               ..-..+++.+      
T Consensus        20 il~~vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (220)
T TIGR02982        20 VLFDINLEINPGE--IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL   97 (220)
T ss_pred             EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence            4555555566677  9999999999999999999876432110   000               0011122221      


Q ss_pred             CH-------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889          221 SI-------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---  272 (333)
Q Consensus       221 ~~-------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---  272 (333)
                      +.                   ......+++.+++.....     .+ .+.....+.+.+..++-+++||++.+..|.   
T Consensus        98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~  177 (220)
T TIGR02982        98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG  177 (220)
T ss_pred             CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence            11                   112344555555532111     12 234455688888889999999999876442   


Q ss_pred             ---hhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 ---DRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ---~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         ..+..... ..+..||++||+.++. .++++.+.+
T Consensus       178 ~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l  214 (220)
T TIGR02982       178 RDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHM  214 (220)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEE
Confidence               22222222 2377899999999865 466666544

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=4.6e-07  Score=79.17  Aligned_cols=61  Identities=2%  Similarity=0.062  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          245 VRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .....+.+.+..++-+++||++.+..|..      .+..... .+..||++||+......++++.+.+
T Consensus       154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l  220 (252)
T PRK14272        154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFF  220 (252)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEE
Confidence            34556778888889999999998764422      2222222 2578999999999877776766444

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.45  E-value=3.2e-07  Score=87.39  Aligned_cols=162  Identities=16%  Similarity=0.112  Sum_probs=91.8

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..++.|..++..++. +.+.++||.|+||||+|+.+.......+.+...+|.+.+.        ..+.
T Consensus         9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~   80 (504)
T PRK14963          9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVR   80 (504)
T ss_pred             CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHh
Confidence            344556789999999999999887764 3569999999999999999988765322222222222110        0000


Q ss_pred             HHhC-----CCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhccCCC--CCCCcEEEEeeCChH-H
Q 046889          231 GWLG-----IKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVGIPY--GNDGCKFLLTSRSRA-A  295 (333)
Q Consensus       231 ~~l~-----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~g~~vivTTr~~~-v  295 (333)
                      ....     +........+.. ..+.+.+     ..++.++|+|+++..  ..+..+.-.+  ....+.+|++|+... +
T Consensus        81 ~~~h~dv~el~~~~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl  159 (504)
T PRK14963         81 RGAHPDVLEIDAASNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKM  159 (504)
T ss_pred             cCCCCceEEecccccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhC
Confidence            0000     000011112221 1122222     246679999999754  2344442222  223556666665543 3


Q ss_pred             Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+..+  .+.+.++++++....+.+.+
T Consensus       160 ~~~I~SRc~~~~f~~ls~~el~~~L~~i~  188 (504)
T PRK14963        160 PPTILSRTQHFRFRRLTEEEIAGKLRRLL  188 (504)
T ss_pred             ChHHhcceEEEEecCCCHHHHHHHHHHHH
Confidence            2223332  38999999999999988765

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=4.1e-07  Score=79.46  Aligned_cols=140  Identities=11%  Similarity=0.221  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~~~~  221 (333)
                      ..++.+...+..++  +++|+|++|+|||||++.+.+....      .+.  ++              .....++++.+.
T Consensus        18 ~~l~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~   95 (251)
T PRK14251         18 EALHGISLDFEEKE--LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT   95 (251)
T ss_pred             eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence            35555665566777  8999999999999999999987531      110  00              000112233211


Q ss_pred             -----HH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 -----IT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 -----~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                           ..                   .....+++.+++.         .....+ .+.....+.+.+..++-+++||++.
T Consensus        96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~  175 (251)
T PRK14251         96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT  175 (251)
T ss_pred             cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence                 10                   0112233444431         001111 2334556778888899999999998


Q ss_pred             Cchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|..      .+..... .+..||++||+......++++.+.|
T Consensus       176 ~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l  219 (251)
T PRK14251        176 SALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTAFL  219 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEEEEE
Confidence            765422      2212222 2567999999999877766666444

>PRK09087 hypothetical protein; Validated

Probab=98.45  E-value=1.7e-06  Score=74.12  Aligned_cols=109  Identities=17%  Similarity=0.158  Sum_probs=66.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR  258 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~  258 (333)
                      +.+.|+|+.|+|||+|++.++....       ..++...      .+...++.                     .+.+  
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~---------------------~~~~--   88 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN---------------------AAAE--   88 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH---------------------hhhc--
Confidence            4689999999999999998876532       1122211      11111111                     1111  


Q ss_pred             eEEEEeCCCCc----hhhhhccCCCCCCCcEEEEeeCCh---------HHHhhcccce-EecCCCCHHHHHHHHHhhcc
Q 046889          259 VLVILDDLWVQ----IELDRVGIPYGNDGCKFLLTSRSR---------AACNQMQAHI-VDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       259 ~LlVlDdv~~~----~~~~~l~~~~~~~g~~vivTTr~~---------~v~~~~~~~~-~~l~~L~~~e~~~lf~~~a~  323 (333)
                      -+|++||+...    ..+..+.......|..+|+|++..         +...++.... +.+++++.++-.+++++++-
T Consensus        89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~  167 (226)
T PRK09087         89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA  167 (226)
T ss_pred             CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence            37888998532    233333222334477899988742         2333344444 99999999999999998763

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=5.8e-07  Score=78.59  Aligned_cols=61  Identities=2%  Similarity=0.037  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          245 VRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .....+.+.+...+-+++||++.+..|..      .+...... +..||++||+......++++.+.+
T Consensus       155 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l  221 (253)
T PRK14261        155 QQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFM  221 (253)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEE
Confidence            34556778888889999999998764422      22222222 467999999998877666665443

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.44  E-value=9.5e-08  Score=77.61  Aligned_cols=145  Identities=17%  Similarity=0.232  Sum_probs=82.0

Q ss_pred             cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEe---CCCCC-------------
Q 046889          158 NFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVV---SQTPS-------------  221 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v---~~~~~-------------  221 (333)
                      ..+|....++.+...+..++  +.+|+||||+|||||...+....+.+.   ..+|+.-   ...++             
T Consensus         9 K~y~~~~vl~~isl~i~~g~--iTs~IGPNGAGKSTLLS~~sRL~~~d~---G~i~i~g~~~~~~~s~~LAk~lSILkQ~   83 (252)
T COG4604           9 KSYGTKVVLDDVSLDIPKGG--ITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLELTSTPSKELAKKLSILKQE   83 (252)
T ss_pred             HhhCCEEeeccceeeecCCc--eeEEECCCCccHHHHHHHHHHhccccC---ceEEEeeeecccCChHHHHHHHHHHHhh
Confidence            34555556666666666677  999999999999999998887664322   2334321   11111             


Q ss_pred             ----------------------------HHHHHHHHHHHhCCCCCCCCCH------HHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 ----------------------------ITKIQDEIAGWLGIKELPDNDE------LVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 ----------------------------~~~~~~~i~~~l~~~~~~~~~~------~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                                                  -..+..+.++.+.+.+......      +..+..+.-.+.+..-.++||++-
T Consensus        84 N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPL  163 (252)
T COG4604          84 NHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL  163 (252)
T ss_pred             chhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcc
Confidence                                        1122222233333321111111      112233444445555688999998


Q ss_pred             Cchhhhhc------cC-CCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          268 VQIELDRV------GI-PYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       268 ~~~~~~~l------~~-~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      +..+.+.-      .. .-..-|-.|+++-|+-++|..++++.+-++
T Consensus       164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK  210 (252)
T COG4604         164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALK  210 (252)
T ss_pred             cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeec
Confidence            77553321      11 112227789999999999988887775443

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.44  E-value=7.4e-07  Score=76.54  Aligned_cols=139  Identities=13%  Similarity=0.251  Sum_probs=80.4

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCCH--HHH--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPSI--TKI--  225 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~~--~~~--  225 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++            .....++.+.+..  ..+  
T Consensus        29 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~  106 (226)
T cd03248          29 VLQDVSFTLHPGE--VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQD  106 (226)
T ss_pred             cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHH
Confidence            5666666666777  9999999999999999999977543211   00            0001122222210  000  


Q ss_pred             ----------------------HHHHHHHh--CCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          226 ----------------------QDEIAGWL--GIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       226 ----------------------~~~i~~~l--~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                                            ...+++.+  +...     ....+ .+...-.+.+.+..++-+++||++.+..|    
T Consensus       107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~  186 (226)
T cd03248         107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE  186 (226)
T ss_pred             HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence                                  11223333  2221     11112 33445668888888999999999987644    


Q ss_pred             --hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                        +..+...... +..||++||+...... +++.+.|.
T Consensus       187 ~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~  222 (226)
T cd03248         187 QQVQQALYDWPE-RRTVLVIAHRLSTVER-ADQILVLD  222 (226)
T ss_pred             HHHHHHHHHHcC-CCEEEEEECCHHHHHh-CCEEEEec
Confidence              2222122222 4679999999988754 55555553

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=9e-07  Score=78.43  Aligned_cols=135  Identities=16%  Similarity=0.159  Sum_probs=79.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C-------------CeEEEEEeCCCC-------C
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F-------------DEVAMAVVSQTP-------S  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f-------------~~~~wv~v~~~~-------~  221 (333)
                      .++.+...+..|+  +++|+|++|+|||||++.+.+...+...   |             ...+ .++.+.+       +
T Consensus        22 ~l~~v~l~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i-~~v~q~~~~~~~~~t   98 (277)
T PRK13642         22 QLNGVSFSITKGE--WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI-GMVFQNPDNQFVGAT   98 (277)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce-EEEEECHHHhhccCC
Confidence            4555555566777  9999999999999999999876543211   0             0011 1122221       1


Q ss_pred             HH------------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh-----
Q 046889          222 IT------------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-----  272 (333)
Q Consensus       222 ~~------------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-----  272 (333)
                      +.                  .....+++.+++...     ...+ .+.....+.+.|..++-+++||++.+..|.     
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~  178 (277)
T PRK13642         99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE  178 (277)
T ss_pred             HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            10                  011233344443211     1112 334556788888889999999999876442     


Q ss_pred             -hhccCCCCC-CCcEEEEeeCChHHHhhcccce
Q 046889          273 -DRVGIPYGN-DGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       273 -~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~  303 (333)
                       ..+...... .|..||++||+...+.. +++.
T Consensus       179 l~~~l~~l~~~~g~tiil~sH~~~~~~~-~d~i  210 (277)
T PRK13642        179 IMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRI  210 (277)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEE
Confidence             222222222 37889999999988763 4444

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.43  E-value=6.9e-07  Score=80.93  Aligned_cols=124  Identities=16%  Similarity=0.216  Sum_probs=73.8

Q ss_pred             EEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CHH------------------HH
Q 046889          183 ICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SIT------------------KI  225 (333)
Q Consensus       183 I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~~------------------~~  225 (333)
                      |+|++|+|||||++.+.+..++...   ++.          .....+.+.+      +..                  ..
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~   80 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR   80 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence            5899999999999999977543211   000          0112223322      111                  11


Q ss_pred             HHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCC-CCCCcEEEEeeCC
Q 046889          226 QDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPY-GNDGCKFLLTSRS  292 (333)
Q Consensus       226 ~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~-~~~g~~vivTTr~  292 (333)
                      ...+++.+++.....     .+ .+...-.+.+.|..++-+++||++.+..|      +..+.... ...|..||++||+
T Consensus        81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd  160 (325)
T TIGR01187        81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD  160 (325)
T ss_pred             HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            234455555542211     12 33455678888888999999999987754      22222222 2237789999999


Q ss_pred             hHHHhhcccceEec
Q 046889          293 RAACNQMQAHIVDV  306 (333)
Q Consensus       293 ~~v~~~~~~~~~~l  306 (333)
                      ...+..++++.+.|
T Consensus       161 ~~e~~~~~d~i~vl  174 (325)
T TIGR01187       161 QEEAMTMSDRIAIM  174 (325)
T ss_pred             HHHHHHhCCEEEEE
Confidence            99877777766433

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.43  E-value=1.1e-07  Score=91.26  Aligned_cols=144  Identities=19%  Similarity=0.259  Sum_probs=84.6

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh--hcC-----------CC----eEEEEEeCCCC---
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE--KKM-----------FD----EVAMAVVSQTP---  220 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~-----------f~----~~~wv~v~~~~---  220 (333)
                      +....++.+...+..++  +++|+|+||+|||||++.+.+....  .+.           ..    .....++++.+   
T Consensus       271 ~~~~il~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~  348 (490)
T PRK10938        271 NDRPILHNLSWQVNPGE--HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD  348 (490)
T ss_pred             CCeeEEeeceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhh
Confidence            33345666766666777  9999999999999999999875331  000           00    00001111110   


Q ss_pred             -----CH----------------------HHHHHHHHHHhCCCC-CCCCC------HHHHHHHHHHHHccCceEEEEeCC
Q 046889          221 -----SI----------------------TKIQDEIAGWLGIKE-LPDND------ELVRASLLCKRIEKQRVLVILDDL  266 (333)
Q Consensus       221 -----~~----------------------~~~~~~i~~~l~~~~-~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv  266 (333)
                           ..                      ......+++.+++.. .....      .+...-.+.+.+..++-+++||++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP  428 (490)
T PRK10938        349 YRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP  428 (490)
T ss_pred             cccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence                 00                      112345566666643 22222      234455688888889999999999


Q ss_pred             CCchhh------hhccCCCCCCC-cEEEEeeCChHHHhh-cccceEec
Q 046889          267 WVQIEL------DRVGIPYGNDG-CKFLLTSRSRAACNQ-MQAHIVDV  306 (333)
Q Consensus       267 ~~~~~~------~~l~~~~~~~g-~~vivTTr~~~v~~~-~~~~~~~l  306 (333)
                      .+..|.      ..+.......| +.||++||+.+.+.. ++...+.|
T Consensus       429 t~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l  476 (490)
T PRK10938        429 LQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV  476 (490)
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEe
Confidence            877542      22222222233 469999999988765 45555444

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.42  E-value=2.9e-07  Score=85.98  Aligned_cols=161  Identities=16%  Similarity=0.190  Sum_probs=106.0

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-------------------Ee
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-------------------VV  216 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-------------------~v  216 (333)
                      ..+.||.-..++.+...+..++  |.+++|.||+|||||++.+.+-..+..   ..+|+                   .+
T Consensus        14 i~K~FggV~AL~~v~l~v~~GE--V~aL~GeNGAGKSTLmKiLsGv~~p~~---G~I~~~G~~~~~~sp~~A~~~GI~~V   88 (500)
T COG1129          14 ISKSFGGVKALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPRDALAAGIATV   88 (500)
T ss_pred             ceEEcCCceeeccceeEEeCce--EEEEecCCCCCHHHHHHHHhCcccCCC---ceEEECCEEccCCCHHHHHhCCcEEE
Confidence            3456777788888888888888  999999999999999999987765432   11111                   11


Q ss_pred             CCCC----------------------------CHHHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEE
Q 046889          217 SQTP----------------------------SITKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVI  262 (333)
Q Consensus       217 ~~~~----------------------------~~~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlV  262 (333)
                      .|..                            ......+.++..++.....     ..+ .+.+.-.|.+.+..+.-+||
T Consensus        89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI  168 (500)
T COG1129          89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI  168 (500)
T ss_pred             eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            1111                            1123345566666653111     112 23455678888888888999


Q ss_pred             EeCCCCch------hhhhccCCCCCCCcEEEEeeCChHHHhhcccce-----------Ee-cCCCCHHHHHHHHHhh
Q 046889          263 LDDLWVQI------ELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI-----------VD-VRTLTEEESWRSAEGK  321 (333)
Q Consensus       263 lDdv~~~~------~~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~-----------~~-l~~L~~~e~~~lf~~~  321 (333)
                      ||++.+..      .+..+...+...|..||.+||..+-...++++.           .. +..++.++..++.-.+
T Consensus       169 lDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~MvGr  245 (500)
T COG1129         169 LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVGR  245 (500)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHhhCc
Confidence            99998662      244444455677999999999987655555543           23 4567777777776543

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.42  E-value=3.9e-06  Score=81.94  Aligned_cols=164  Identities=13%  Similarity=0.186  Sum_probs=93.5

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..++.|..++..+++ +.+.++|+.|+||||+++.+.....-...+..       ..+..-..++.|.
T Consensus        11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~   83 (830)
T PRK07003         11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREID   83 (830)
T ss_pred             CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHh
Confidence            344567789999999999999987764 45689999999999999998877642111100       0011111111111


Q ss_pred             HH-----hCCCCCCCCCHHHHHHHHHHH----HccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChHH-H
Q 046889          231 GW-----LGIKELPDNDELVRASLLCKR----IEKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRAA-C  296 (333)
Q Consensus       231 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~v-~  296 (333)
                      ..     +.+........++....+...    ...+..++|||++....  .++.+.  +.....++++|++|++..- .
T Consensus        84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp  163 (830)
T PRK07003         84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP  163 (830)
T ss_pred             cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence            10     000000111122222222211    12356699999997653  244442  2222336788888877653 2


Q ss_pred             hhcccce--EecCCCCHHHHHHHHHhhc
Q 046889          297 NQMQAHI--VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       297 ~~~~~~~--~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..+.++.  +.+++++.++..+.+.+..
T Consensus       164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il  191 (830)
T PRK07003        164 VTVLSRCLQFNLKQMPAGHIVSHLERIL  191 (830)
T ss_pred             chhhhheEEEecCCcCHHHHHHHHHHHH
Confidence            2333333  9999999999988887654

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=5e-07  Score=81.17  Aligned_cols=59  Identities=2%  Similarity=0.099  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          244 LVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      +..+..|.+.|..++-+++||++.+..+.      ..+...... +..||++||+...+..++++.
T Consensus       205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i  269 (305)
T PRK14264        205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQT  269 (305)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEE
Confidence            34456678888889999999999876442      222222222 356999999999877766664

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=5.9e-07  Score=78.81  Aligned_cols=139  Identities=12%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CCe--------------EEEEEeCCCCC-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FDE--------------VAMAVVSQTPS-  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~~--------------~~wv~v~~~~~-  221 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+....      .+.  ++.              .....+++.+. 
T Consensus        22 il~~isl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l   99 (259)
T PRK14260         22 AIEGISMDIYRNK--VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP   99 (259)
T ss_pred             eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence            4555555566677  9999999999999999999986542      110  000              00112223221 


Q ss_pred             ----HH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          222 ----IT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       222 ----~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                          ..                   ....+++..+++.         .....+ .+.....+.+.+..++-+++||++.+
T Consensus       100 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~  179 (259)
T PRK14260        100 FPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS  179 (259)
T ss_pred             CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence                10                   1122333333331         001112 33445567888888889999999987


Q ss_pred             chh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          269 QIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       269 ~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|      +..+...... +..||++||+.+.+..++++.+.+
T Consensus       180 ~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l  222 (259)
T PRK14260        180 ALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFF  222 (259)
T ss_pred             cCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEE
Confidence            644      2222122222 467999999999888777777444

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.41  E-value=5.5e-07  Score=79.78  Aligned_cols=136  Identities=15%  Similarity=0.119  Sum_probs=77.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCC-----HH-H----------H
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPS-----IT-K----------I  225 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~-----~~-~----------~  225 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.. ..++++.+.     .. .          -
T Consensus        52 vL~~vs~~i~~Ge--~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~-i~yv~q~~~l~~~tv~enl~~~~~~~~~~  128 (282)
T cd03291          52 VLKNINLKIEKGE--MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-ISFSSQFSWIMPGTIKENIIFGVSYDEYR  128 (282)
T ss_pred             ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE-EEEEeCcccccccCHHHHhhcccccCHHH
Confidence            5556655566677  9999999999999999999987643221   1110 112233221     00 0          0


Q ss_pred             HHHHHHHhCCCC----------------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCC
Q 046889          226 QDEIAGWLGIKE----------------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGND  282 (333)
Q Consensus       226 ~~~i~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~  282 (333)
                      ...++..++...                ....+ .+.....+.+.+..++-+++||++.+..+      +....+.....
T Consensus       129 ~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~  208 (282)
T cd03291         129 YKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA  208 (282)
T ss_pred             HHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhC
Confidence            112222222110                01222 34455678888889999999999987644      22211111123


Q ss_pred             CcEEEEeeCChHHHhhcccceE
Q 046889          283 GCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       283 g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      +..||++||+..... .+++.+
T Consensus       209 ~~tIiiisH~~~~~~-~~d~i~  229 (282)
T cd03291         209 NKTRILVTSKMEHLK-KADKIL  229 (282)
T ss_pred             CCEEEEEeCChHHHH-hCCEEE
Confidence            678999999998765 444443

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=8.3e-07  Score=78.95  Aligned_cols=140  Identities=13%  Similarity=0.205  Sum_probs=82.9

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC--------------eEEEEEeCC
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD--------------EVAMAVVSQ  218 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~--------------~~~wv~v~~  218 (333)
                      +....++.+...+..++  +++|+|++|+|||||++.+.+....      .+.  |.              .....++++
T Consensus        50 ~~~~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q  127 (285)
T PRK14254         50 GDEQALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQ  127 (285)
T ss_pred             CCEeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEec
Confidence            33446667777677777  9999999999999999999876431      110  00              001122333


Q ss_pred             CC-----CHHH-----------------HHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889          219 TP-----SITK-----------------IQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDL  266 (333)
Q Consensus       219 ~~-----~~~~-----------------~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv  266 (333)
                      .+     +..+                 ....+++.+++.         .....+ .+..+..|.+.|..++-+|+||++
T Consensus       128 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEP  207 (285)
T PRK14254        128 KPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEP  207 (285)
T ss_pred             CCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            32     1111                 112334444431         011112 344566788888889999999999


Q ss_pred             CCchhhh------hccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          267 WVQIELD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       267 ~~~~~~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      .+..+..      .+...... +..||++||+...+..++++.
T Consensus       208 ts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri  249 (285)
T PRK14254        208 ASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKT  249 (285)
T ss_pred             CCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEE
Confidence            8775432      22222222 356999999999877766654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.40  E-value=1.1e-06  Score=95.12  Aligned_cols=137  Identities=18%  Similarity=0.228  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-----------eEEEEEeCCCC------CHH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-----------EVAMAVVSQTP------SIT  223 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-----------~~~wv~v~~~~------~~~  223 (333)
                      ..++++...+..|+  +++|+|+||+|||||++.+.+...+...   +.           .....+++|..      +..
T Consensus      1953 ~aL~~ISf~I~~GE--i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257      1953 PAVDRLCVGVRPGE--CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred             eEEEeeEEEEcCCc--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHH
Confidence            35555555556677  9999999999999999999987643210   00           00122333332      111


Q ss_pred             ------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh-------h
Q 046889          224 ------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-------L  272 (333)
Q Consensus       224 ------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~  272 (333)
                                        .....+++.+++.....     .+ .+..+-.+...|-.++-+++||++.+..|       |
T Consensus      2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~ 2110 (2272)
T TIGR01257      2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLW 2110 (2272)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence                              11223455555532211     12 23344567888888999999999987644       3


Q ss_pred             hhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      +.+ ......|..||+|||+.+.+..++++.
T Consensus      2111 ~lL-~~l~~~g~TIILtTH~mee~e~lcDrV 2140 (2272)
T TIGR01257      2111 NTI-VSIIREGRAVVLTSHSMEECEALCTRL 2140 (2272)
T ss_pred             HHH-HHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence            323 222334788999999999888777665

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.39  E-value=1e-05  Score=74.55  Aligned_cols=163  Identities=13%  Similarity=0.160  Sum_probs=89.7

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..++.+...+..++. +.+.++||.|+||||+|+.+...........       ..++..-.....+.
T Consensus        11 rP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~   83 (363)
T PRK14961         11 RPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE   83 (363)
T ss_pred             CCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence            344556789999999999998887654 4578999999999999999987764211110       00000000111111


Q ss_pred             HHhC-----CCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChH-H
Q 046889          231 GWLG-----IKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRA-A  295 (333)
Q Consensus       231 ~~l~-----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~-v  295 (333)
                      ....     .........++ ...+.+.+     .+++.++|+||+....  .++.+.  +..+...+.+|++|.+.. +
T Consensus        84 ~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l  162 (363)
T PRK14961         84 KGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI  162 (363)
T ss_pred             cCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence            1000     00000011111 12222222     2345699999987553  233331  122233566777776544 3


Q ss_pred             Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+..+  .+++.+++.++....+.+.+
T Consensus       163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~  191 (363)
T PRK14961        163 PKTILSRCLQFKLKIISEEKIFNFLKYIL  191 (363)
T ss_pred             hHHHHhhceEEeCCCCCHHHHHHHHHHHH
Confidence            3333322  38999999999888877644

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.39  E-value=5e-06  Score=80.12  Aligned_cols=169  Identities=14%  Similarity=0.184  Sum_probs=92.5

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..++.|...+..++.. .+.++|+.|+||||+++.+.....-...-.... + .++.+..-...+.|.
T Consensus        11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~   88 (700)
T PRK12323         11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEID   88 (700)
T ss_pred             CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHH
Confidence            3445667899999999999999887653 568999999999999999987764211000000 0 000001011111111


Q ss_pred             H-----HhCCCCCCCCCHHHHHHHHHHH----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-HH
Q 046889          231 G-----WLGIKELPDNDELVRASLLCKR----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-AC  296 (333)
Q Consensus       231 ~-----~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v~  296 (333)
                      .     .+.+........++....+...    ..++..++|+|++...  ..++.+.  +.....++.+|++|++.. +.
T Consensus        89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl  168 (700)
T PRK12323         89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP  168 (700)
T ss_pred             cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence            0     0011000111222222222211    1345679999998754  3344432  222334667777776654 33


Q ss_pred             hhcccce--EecCCCCHHHHHHHHHhhc
Q 046889          297 NQMQAHI--VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       297 ~~~~~~~--~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..+.++.  +.++.++.++..+.+.+.+
T Consensus       169 pTIrSRCq~f~f~~ls~eei~~~L~~Il  196 (700)
T PRK12323        169 VTVLSRCLQFNLKQMPPGHIVSHLDAIL  196 (700)
T ss_pred             hHHHHHHHhcccCCCChHHHHHHHHHHH
Confidence            3333333  8999999998888777543

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.39  E-value=8.5e-06  Score=78.10  Aligned_cols=152  Identities=12%  Similarity=0.171  Sum_probs=86.9

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcC-------------------CCeE
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKM-------------------FDEV  211 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------f~~~  211 (333)
                      .|.....++|.+..++.|...+..++. +.+.++||.|+||||+|+.+.....-...                   |...
T Consensus        11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl   90 (546)
T PRK14957         11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL   90 (546)
T ss_pred             CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence            344556789999999999999987664 45789999999999999999876532110                   1111


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH-HHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEE
Q 046889          212 AMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCK-RIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKF  286 (333)
Q Consensus       212 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~v  286 (333)
                      +++.........+ .+                 ++...+.. -..+++-++|+||+...  ..++.+.  +..+...+.+
T Consensus        91 ieidaas~~gvd~-ir-----------------~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f  152 (546)
T PRK14957         91 IEIDAASRTGVEE-TK-----------------EILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF  152 (546)
T ss_pred             EEeecccccCHHH-HH-----------------HHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence            1111111111111 11                 11111111 12346679999998744  2233331  1222235666


Q ss_pred             EEeeCChH-HHhhcccce--EecCCCCHHHHHHHHHhh
Q 046889          287 LLTSRSRA-ACNQMQAHI--VDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       287 ivTTr~~~-v~~~~~~~~--~~l~~L~~~e~~~lf~~~  321 (333)
                      |++|.+.. +...+..+.  +.+.+++.++....+.+.
T Consensus       153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~i  190 (546)
T PRK14957        153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKII  190 (546)
T ss_pred             EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHH
Confidence            66555543 332333333  899999999887777663

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.38  E-value=6e-07  Score=88.97  Aligned_cols=141  Identities=13%  Similarity=0.125  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC-eEEEEEeCCCCC-----H------------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD-EVAMAVVSQTPS-----I------------  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~-~~~wv~v~~~~~-----~------------  222 (333)
                      ..++.+...+.+|+  +++|+|++|+|||||++.+.+...+.+.   ++ ......++|.+.     .            
T Consensus       466 ~il~~isl~i~~Ge--~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~  543 (659)
T TIGR00954       466 VLIESLSFEVPSGN--HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSED  543 (659)
T ss_pred             eeeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhh
Confidence            46777776667777  9999999999999999999987543221   10 011223333320     0            


Q ss_pred             -------HHHHHHHHHHhCCCCC--------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cC
Q 046889          223 -------TKIQDEIAGWLGIKEL--------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GI  277 (333)
Q Consensus       223 -------~~~~~~i~~~l~~~~~--------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~  277 (333)
                             .+-..++++.+++.+.              ...+ .+.++-.+.+.+-.++-+++||++.+..|....   .-
T Consensus       544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~  623 (659)
T TIGR00954       544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR  623 (659)
T ss_pred             hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence                   1223345555554311              1122 344556788888899999999999877442211   11


Q ss_pred             CCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          278 PYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       278 ~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .....|..+|++||+..... .+++.+.++
T Consensus       624 ~l~~~~~tvI~isH~~~~~~-~~d~il~l~  652 (659)
T TIGR00954       624 LCREFGITLFSVSHRKSLWK-YHEYLLYMD  652 (659)
T ss_pred             HHHHcCCEEEEEeCchHHHH-hCCEEEEEe
Confidence            11223778999999998764 455556554

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.38  E-value=1e-05  Score=73.08  Aligned_cols=148  Identities=17%  Similarity=0.211  Sum_probs=91.3

Q ss_pred             ccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHH----hhcCCCeEEEEEe-CCCCCHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAK----EKKMFDEVAMAVV-SQTPSITKIQDEIA  230 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~----~~~~f~~~~wv~v-~~~~~~~~~~~~i~  230 (333)
                      ..++|.+...+.+..++..++. +.+.++||.|+||||+|+.++....    ...|++...|... +.....++ ++++.
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~   82 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII   82 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence            4567888999999999987654 5678999999999999999987642    2234555444331 12222222 22333


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCC--Cchhhhhcc--CCCCCCCcEEEEeeCChHHH-hhccc--ce
Q 046889          231 GWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLW--VQIELDRVG--IPYGNDGCKFLLTSRSRAAC-NQMQA--HI  303 (333)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~--~~~~~~g~~vivTTr~~~v~-~~~~~--~~  303 (333)
                      +.+...                -..+++-++|+|++.  +...++.+.  +..+..++.+|++|++.+.. ..+.+  ..
T Consensus        83 ~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~  146 (313)
T PRK05564         83 EEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI  146 (313)
T ss_pred             HHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence            332221                112456677888764  333444441  33344588888888876532 22222  23


Q ss_pred             EecCCCCHHHHHHHHHhh
Q 046889          304 VDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       304 ~~l~~L~~~e~~~lf~~~  321 (333)
                      +.+.++++++....+.+.
T Consensus       147 ~~~~~~~~~~~~~~l~~~  164 (313)
T PRK05564        147 YKLNRLSKEEIEKFISYK  164 (313)
T ss_pred             eeCCCcCHHHHHHHHHHH
Confidence            899999999988877654

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=8.3e-07  Score=77.44  Aligned_cols=59  Identities=3%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          244 LVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      +...-.+.+.+..++-+++||++.+..|      +..+..... .+..||++||+......++++.
T Consensus       151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i  215 (250)
T PRK14266        151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYT  215 (250)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEE
Confidence            3345567788888899999999987644      222222222 3678999999998877766655

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.37  E-value=9.5e-07  Score=87.00  Aligned_cols=158  Identities=14%  Similarity=0.147  Sum_probs=92.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEE---------------EEeCCCC------CH-
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAM---------------AVVSQTP------SI-  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w---------------v~v~~~~------~~-  222 (333)
                      .++++...+.+|+  +++|+|++|+|||||.+.+.+...........++               .+++|..      ++ 
T Consensus        40 iL~~vs~~i~~Ge--~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~  117 (617)
T TIGR00955        40 LLKNVSGVAKPGE--LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVR  117 (617)
T ss_pred             cccCCEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHH
Confidence            4555555555677  9999999999999999999986543211111111               1222221      11 


Q ss_pred             --------------------HHHHHHHHHHhCCCCC------------CCCCHHHHHHHHHHHHccCceEEEEeCCCCch
Q 046889          223 --------------------TKIQDEIAGWLGIKEL------------PDNDELVRASLLCKRIEKQRVLVILDDLWVQI  270 (333)
Q Consensus       223 --------------------~~~~~~i~~~l~~~~~------------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~  270 (333)
                                          ......+++.+++...            .-...+..+-.+...|-.++-+++|||+.+..
T Consensus       118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgL  197 (617)
T TIGR00955       118 EHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGL  197 (617)
T ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcch
Confidence                                1234556666665311            01123445667888888899999999998775


Q ss_pred             hh------hhccCCCCCCCcEEEEeeCChH-HHhhcccceEecC------CCCHHHHHHHHHhhccc
Q 046889          271 EL------DRVGIPYGNDGCKFLLTSRSRA-ACNQMQAHIVDVR------TLTEEESWRSAEGKRRV  324 (333)
Q Consensus       271 ~~------~~l~~~~~~~g~~vivTTr~~~-v~~~~~~~~~~l~------~L~~~e~~~lf~~~a~~  324 (333)
                      |-      ..........|..||+|||.+. ....+.++.+-|.      .-+.++....|....+.
T Consensus       198 D~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~  264 (617)
T TIGR00955       198 DSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHP  264 (617)
T ss_pred             hHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCC
Confidence            41      1111122234788999999974 2333333332222      23567788888776544

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.37  E-value=6.5e-06  Score=78.34  Aligned_cols=168  Identities=13%  Similarity=0.147  Sum_probs=91.8

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe-EEEEEeCCCCCHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE-VAMAVVSQTPSITKIQDEI  229 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i  229 (333)
                      .|.....++|.+..+..|...+..++. +-+.++||.|+||||+|+.+............ ..+..    +..-.....+
T Consensus        16 RP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~----C~~C~~C~~i   91 (507)
T PRK06645         16 RPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT----CEQCTNCISF   91 (507)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC----CCCChHHHHH
Confidence            344556789999999999887777653 57889999999999999999887642211100 00000    0000011111


Q ss_pred             HHHhC-----CCCCCCCCHHHHHHHHHHH----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEee-CChHH
Q 046889          230 AGWLG-----IKELPDNDELVRASLLCKR----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTS-RSRAA  295 (333)
Q Consensus       230 ~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTT-r~~~v  295 (333)
                      .....     +........++....+...    +.+++.++|+||++..  ..++.+.  +..+...+.+|++| +...+
T Consensus        92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI  171 (507)
T PRK06645         92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI  171 (507)
T ss_pred             hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence            11000     0000111222222221111    2346779999999864  3344442  12223355665544 44444


Q ss_pred             Hhhcccc--eEecCCCCHHHHHHHHHhhcc
Q 046889          296 CNQMQAH--IVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      ...+..+  .+.+.+++.++....+.+.+-
T Consensus       172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~  201 (507)
T PRK06645        172 PATIISRCQRYDLRRLSFEEIFKLLEYITK  201 (507)
T ss_pred             hHHHHhcceEEEccCCCHHHHHHHHHHHHH
Confidence            4333333  389999999999998887653

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.37  E-value=7.3e-07  Score=78.50  Aligned_cols=141  Identities=10%  Similarity=0.174  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--CC----------------eEEEEEeCC
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--FD----------------EVAMAVVSQ  218 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f~----------------~~~wv~v~~  218 (333)
                      ...++.+...+..++  +++|+|++|+|||||++.+.+...+      .+.  |+                .....++++
T Consensus        29 ~~vl~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q  106 (265)
T PRK14252         29 YQALKNINMMVHEKQ--VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ  106 (265)
T ss_pred             eeeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEcc
Confidence            346666766677777  9999999999999999999876431      010  10                011123333


Q ss_pred             CCC-----HH-------------------HHHHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEe
Q 046889          219 TPS-----IT-------------------KIQDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILD  264 (333)
Q Consensus       219 ~~~-----~~-------------------~~~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlD  264 (333)
                      .+.     ..                   ......+..++..         .....+ .+.....+.+.+..++-+++||
T Consensus       107 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  186 (265)
T PRK14252        107 KPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD  186 (265)
T ss_pred             CCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            321     10                   0111222223321         011112 2344556778888899999999


Q ss_pred             CCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          265 DLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       265 dv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ++.+..+.      ..+...... +..||++||+.+.+..++++.+.+
T Consensus       187 EPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l  233 (265)
T PRK14252        187 EPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYM  233 (265)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEE
Confidence            99876442      222222222 567999999999887777666443

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.36  E-value=8.7e-07  Score=77.44  Aligned_cols=62  Identities=6%  Similarity=0.142  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          244 LVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.....+.+.+..++-+++||++.+..|.      ..+...... +..||++||+.+.+..++++.+.+
T Consensus       153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l  220 (252)
T PRK14255        153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFF  220 (252)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEE
Confidence            33455677888888999999999876442      222222222 467999999999887777766444

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.36  E-value=1.8e-06  Score=73.56  Aligned_cols=129  Identities=21%  Similarity=0.249  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR  258 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~  258 (333)
                      ..+.|+|+.|+|||.|++.+++.......-..++++.      ..++...+...+...         ....+...+. .-
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~-~~   98 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLR-SA   98 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHC-TS
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhh-cC
Confidence            4688999999999999999999876432222334442      345555555544321         1223444444 45


Q ss_pred             eEEEEeCCCCch-------hhhhccCCCCCCCcEEEEeeCChH---------HHhhcccce-EecCCCCHHHHHHHHHhh
Q 046889          259 VLVILDDLWVQI-------ELDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAHI-VDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       259 ~LlVlDdv~~~~-------~~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~~-~~l~~L~~~e~~~lf~~~  321 (333)
                      -+|++||+....       .+..+.-.....|.++|+|++...         ...++.... +.+++.++++...+++++
T Consensus        99 DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~  178 (219)
T PF00308_consen   99 DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKK  178 (219)
T ss_dssp             SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHH
T ss_pred             CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHH
Confidence            689999997542       122222222344778999996553         233444444 899999999999999988


Q ss_pred             cc
Q 046889          322 RR  323 (333)
Q Consensus       322 a~  323 (333)
                      +-
T Consensus       179 a~  180 (219)
T PF00308_consen  179 AK  180 (219)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.35  E-value=1.5e-06  Score=67.63  Aligned_cols=132  Identities=11%  Similarity=0.142  Sum_probs=78.6

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeC----------------------------CC-----
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS----------------------------QT-----  219 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~----------------------------~~-----  219 (333)
                      +..++  ++.+.||+|+|||||..-+.+.....-.|...+|+.-.                            ++     
T Consensus        25 ia~Ge--ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl  102 (213)
T COG4136          25 IAKGE--IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL  102 (213)
T ss_pred             ecCCc--EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEec
Confidence            34566  99999999999999999999887754444455664211                            10     


Q ss_pred             -CC-----HHHHHHHHHHHhCCCCCCCCCH------HHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCC-CC
Q 046889          220 -PS-----ITKIQDEIAGWLGIKELPDNDE------LVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIP-YG  280 (333)
Q Consensus       220 -~~-----~~~~~~~i~~~l~~~~~~~~~~------~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~-~~  280 (333)
                       ++     .......-+.+.++...-..++      +.....+.+.|-..+.+++||++.+..+      +..+.+. ..
T Consensus       103 p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r  182 (213)
T COG4136         103 PATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR  182 (213)
T ss_pred             CcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH
Confidence             01     1223334455555543333332      2234457777778888899999987633      3333221 12


Q ss_pred             CCCcEEEEeeCChHHHhhcccceEecC
Q 046889          281 NDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       281 ~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      ..|-..|.+||+..-+. .+.++|++.
T Consensus       183 ~agiPtv~VTHD~~Dvp-agsrVie~~  208 (213)
T COG4136         183 AAGIPTVQVTHDLQDVP-AGSRVIEMA  208 (213)
T ss_pred             hcCCCeEEEecccccCC-CCCeeeeee
Confidence            33666888888876544 344445543

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.35  E-value=8.7e-07  Score=75.65  Aligned_cols=140  Identities=16%  Similarity=0.160  Sum_probs=83.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---------CC----------------eEEEEEeCCC
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---------FD----------------EVAMAVVSQT  219 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---------f~----------------~~~wv~v~~~  219 (333)
                      .+.+|+..+..|.  +++++|+||+||||+.+.+.+...+.+.         |.                ...|.+.+-.
T Consensus        39 AVqdisf~IP~G~--ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~  116 (325)
T COG4586          39 AVQDISFEIPKGE--IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL  116 (325)
T ss_pred             hhheeeeecCCCc--EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence            5566777677777  9999999999999999998866543221         11                1234443311


Q ss_pred             CC--------------HHHHHHHHHHHhCCCCC------CCCCHHHHHHHHHHHHccCceEEEEeCCCCchh------hh
Q 046889          220 PS--------------ITKIQDEIAGWLGIKEL------PDNDELVRASLLCKRIEKQRVLVILDDLWVQIE------LD  273 (333)
Q Consensus       220 ~~--------------~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~  273 (333)
                      .+              ..+-+..+.+-+++.+.      .-+..+.....|...|-.++-+|.||++.-..|      +.
T Consensus       117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir  196 (325)
T COG4586         117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR  196 (325)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence            11              01112223333333211      112234456778888888999999998874433      23


Q ss_pred             hccCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 RVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+.-.. ...++.|+.|||+-.-...++.+.+.+
T Consensus       197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I  230 (325)
T COG4586         197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLI  230 (325)
T ss_pred             HHHHHHHHhhCceEEEEecchhhHHHhhhheEEe
Confidence            332222 233899999999987766666766333

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=1e-06  Score=79.90  Aligned_cols=140  Identities=14%  Similarity=0.255  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh------hcC--C-------------C-eEEEEEeCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE------KKM--F-------------D-EVAMAVVSQTPS  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~--f-------------~-~~~wv~v~~~~~  221 (333)
                      ..++.+...+..|+  +++|+|++|+|||||++.+++....      .+.  |             . ......+++.+.
T Consensus        96 ~~L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~  173 (329)
T PRK14257         96 HVLHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT  173 (329)
T ss_pred             eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence            35666766677777  8999999999999999999976531      111  0             0 001112333321


Q ss_pred             -----H---------------HHH----HHHHHHHhCCC---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 -----I---------------TKI----QDEIAGWLGIK---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 -----~---------------~~~----~~~i~~~l~~~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                           .               ...    ....++.+++.         .....+ .+..+..|.+.+..++-+++||++.
T Consensus       174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt  253 (329)
T PRK14257        174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPT  253 (329)
T ss_pred             cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence                 1               011    12233444331         011112 3444566888888999999999998


Q ss_pred             Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..|      +......... ++.||++||+.+.+..++++.+.|
T Consensus       254 s~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl  297 (329)
T PRK14257        254 SALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFF  297 (329)
T ss_pred             ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence            7644      2222222222 578999999999887777766444

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.34  E-value=2.9e-06  Score=74.33  Aligned_cols=138  Identities=15%  Similarity=0.216  Sum_probs=77.4

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCCH-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPSI-------  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~~-------  222 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   ++            .....++.+.+..       
T Consensus        36 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~  113 (257)
T cd03288          36 VLKHVKAYIKPGQ--KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRF  113 (257)
T ss_pred             ceeEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHH
Confidence            4555555556677  9999999999999999999876432110   00            0001122222110       


Q ss_pred             ---------HHHHHHHHHHhCC-----------CC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889          223 ---------TKIQDEIAGWLGI-----------KE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-----  271 (333)
Q Consensus       223 ---------~~~~~~i~~~l~~-----------~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----  271 (333)
                               ..-....+...+.           ..     ....+ .+.....+.+.+..++-+++||++.+..+     
T Consensus       114 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~  193 (257)
T cd03288         114 NLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN  193 (257)
T ss_pred             hcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence                     0001111111111           10     01122 34455678888888999999999986643     


Q ss_pred             -hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 -LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 -~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                       +..+.... ..+..||++||+...... +++.+.|
T Consensus       194 ~l~~~l~~~-~~~~tiii~sh~~~~~~~-~dri~~l  227 (257)
T cd03288         194 ILQKVVMTA-FADRTVVTIAHRVSTILD-ADLVLVL  227 (257)
T ss_pred             HHHHHHHHh-cCCCEEEEEecChHHHHh-CCEEEEE
Confidence             22222222 237889999999998765 4554333

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.34  E-value=7.1e-06  Score=82.33  Aligned_cols=153  Identities=14%  Similarity=0.213  Sum_probs=90.6

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCCHHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      ...+++||+.++..+...|......-+.++|++|+|||++++.+.........    ....+|. +    +...+.    
T Consensus       180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~----  250 (731)
T TIGR02639       180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL----  250 (731)
T ss_pred             CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----
Confidence            45678999999999999887665556789999999999999999988643221    1233342 1    111111    


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHHHc-cCceEEEEeCCCCc----------hhhhhccCCCCCCCc-EEEEeeCChH----
Q 046889          231 GWLGIKELPDNDELVRASLLCKRIE-KQRVLVILDDLWVQ----------IELDRVGIPYGNDGC-KFLLTSRSRA----  294 (333)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~~~~l~~~~~~~g~-~vivTTr~~~----  294 (333)
                      ..    .......++....+.+.+. .++.+|++|++...          .+...+..|.-..|. .+|-+|...+    
T Consensus       251 a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~  326 (731)
T TIGR02639       251 AG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNH  326 (731)
T ss_pred             hh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHH
Confidence            00    0011122333334444433 46789999998632          122233344433443 4455554322    


Q ss_pred             ------HHhhcccceEecCCCCHHHHHHHHHhhc
Q 046889          295 ------ACNQMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       295 ------v~~~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                            +..++  ..+.++.++.++..+++++..
T Consensus       327 ~~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~  358 (731)
T TIGR02639       327 FEKDRALSRRF--QKIDVGEPSIEETVKILKGLK  358 (731)
T ss_pred             hhhhHHHHHhC--ceEEeCCCCHHHHHHHHHHHH
Confidence                  12223  238999999999999998543

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.34  E-value=6e-07  Score=87.05  Aligned_cols=127  Identities=12%  Similarity=0.149  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCCCH------
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTPSI------  222 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~~~------  222 (333)
                      ...++++...+..|+  .++|+|++|+|||||++.+.+...+.+.   ++.           .....++|++.+      
T Consensus       348 ~~vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~  425 (529)
T TIGR02868       348 PPVLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVR  425 (529)
T ss_pred             CceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHH
Confidence            346777877777888  9999999999999999999876544321   111           012345554310      


Q ss_pred             -----------HHHHHHHHHHhCCCC----------------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889          223 -----------TKIQDEIAGWLGIKE----------------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-  273 (333)
Q Consensus       223 -----------~~~~~~i~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-  273 (333)
                                 ++-+.+.++..+..+                ....+ .+.++-.+.+.+-.++-+++|||+.+..|-. 
T Consensus       426 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~t  505 (529)
T TIGR02868       426 DNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGT  505 (529)
T ss_pred             HHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence                       111223333333210                01112 3444567888888999999999998774421 


Q ss_pred             -----hccCCCCCCCcEEEEeeCC
Q 046889          274 -----RVGIPYGNDGCKFLLTSRS  292 (333)
Q Consensus       274 -----~l~~~~~~~g~~vivTTr~  292 (333)
                           ..... ...+..+|++||.
T Consensus       506 e~~I~~~l~~-~~~~~TvIiItHr  528 (529)
T TIGR02868       506 ESELLEDLLA-ALSGKTVVVITHH  528 (529)
T ss_pred             HHHHHHHHHH-hcCCCEEEEEecC
Confidence                 11122 2236788998885

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.33  E-value=4.5e-07  Score=78.94  Aligned_cols=127  Identities=13%  Similarity=0.231  Sum_probs=82.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-------------------------------CCCeEEEEEeCCCC---
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-------------------------------MFDEVAMAVVSQTP---  220 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------------------~f~~~~wv~v~~~~---  220 (333)
                      .++  +..|.|.+|+|||||++++....++..                               .|...-|-+|-++.   
T Consensus        53 ~Ge--IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fG  130 (386)
T COG4175          53 EGE--IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFG  130 (386)
T ss_pred             CCe--EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcc
Confidence            455  899999999999999999986554321                               22222222222111   


Q ss_pred             ---------CHHHHHHHHHHHhCCCCCCCCCH------HHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCC
Q 046889          221 ---------SITKIQDEIAGWLGIKELPDNDE------LVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPY  279 (333)
Q Consensus       221 ---------~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~  279 (333)
                               .-.......++..|+.++....+      .++.-.|.+.|...+-+|++|++.+..+      ..+-.+.+
T Consensus       131 Lev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L  210 (386)
T COG4175         131 LEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL  210 (386)
T ss_pred             eeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence                     11334456677777765544433      3456679999999999999999987643      11111222


Q ss_pred             -CCCCcEEEEeeCChHHHhhcccce
Q 046889          280 -GNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       280 -~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                       ...+-.|+++||+-+.|-++++++
T Consensus       211 q~~l~KTIvFitHDLdEAlriG~rI  235 (386)
T COG4175         211 QAKLKKTIVFITHDLDEALRIGDRI  235 (386)
T ss_pred             HHHhCCeEEEEecCHHHHHhccceE
Confidence             122567999999999999888877

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.33  E-value=1e-05  Score=76.62  Aligned_cols=163  Identities=13%  Similarity=0.156  Sum_probs=86.9

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+.....|...+..++. +.+.++||.|+||||+|+.+...........      . .++..-.....+.
T Consensus         9 RP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~------~-~pc~~c~~c~~i~   81 (472)
T PRK14962          9 RPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG------V-EPCNECRACRSID   81 (472)
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC------C-CCCcccHHHHHHh
Confidence            344567789999988888888877765 4578999999999999999987754211100      0 0000000011110


Q ss_pred             HHh-----CCCCCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhccCCC--CCCCcEEEEeeCCh-HH
Q 046889          231 GWL-----GIKELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVGIPY--GNDGCKFLLTSRSR-AA  295 (333)
Q Consensus       231 ~~l-----~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~g~~vivTTr~~-~v  295 (333)
                      ..-     ..........+... .+.+.     ..+++-++|+|++...  .....+.-..  ....+.+|++|.++ .+
T Consensus        82 ~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl  160 (472)
T PRK14962         82 EGTFMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV  160 (472)
T ss_pred             cCCCCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhh
Confidence            000     00000011122211 22222     2245679999998644  2233331111  12244455555443 33


Q ss_pred             Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+..+  .+.+.+++.++....+.+.+
T Consensus       161 ~~~L~SR~~vv~f~~l~~~el~~~L~~i~  189 (472)
T PRK14962        161 PPTIISRCQVIEFRNISDELIIKRLQEVA  189 (472)
T ss_pred             hHHHhcCcEEEEECCccHHHHHHHHHHHH
Confidence            3333333  38999999999888887765

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.33  E-value=9e-06  Score=79.19  Aligned_cols=163  Identities=13%  Similarity=0.125  Sum_probs=91.5

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..++.|...+..++.. .+.++|+.|+||||+|+.+.....-...+.       ...+..-..++.|.
T Consensus        11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~   83 (647)
T PRK07994         11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE   83 (647)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence            3445667899999999999999887753 468999999999999999987764321110       00111111222221


Q ss_pred             HHh-----CCCCCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-H
Q 046889          231 GWL-----GIKELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-A  295 (333)
Q Consensus       231 ~~l-----~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v  295 (333)
                      ..-     ..........++.. .+.+.     ..++..++|+|++...  ..++.+.  +..+...+++|++|.+.. +
T Consensus        84 ~g~~~D~ieidaas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL  162 (647)
T PRK07994         84 QGRFVDLIEIDAASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  162 (647)
T ss_pred             cCCCCCceeecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence            100     00000011122222 12222     2346679999998754  2333331  222233566666666544 3


Q ss_pred             Hhhccc--ceEecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQA--HIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~--~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+.+  ..+.+++|+.++....+.+..
T Consensus       163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il  191 (647)
T PRK07994        163 PVTILSRCLQFHLKALDVEQIRQQLEHIL  191 (647)
T ss_pred             chHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence            222332  339999999999988887653

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.32  E-value=4.9e-06  Score=84.34  Aligned_cols=152  Identities=13%  Similarity=0.194  Sum_probs=90.0

Q ss_pred             cccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEE-EeCCCCCHHHHHHH
Q 046889          154 EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMA-VVSQTPSITKIQDE  228 (333)
Q Consensus       154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv-~v~~~~~~~~~~~~  228 (333)
                      ....+++||+.++..++..|......-+.++|++|+||||+++.+.........    ....+|. .++.      +   
T Consensus       184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l---  254 (852)
T TIGR03345       184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L---  254 (852)
T ss_pred             CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h---
Confidence            345688999999999999887765556789999999999999999987653221    1122331 1111      0   


Q ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHHHc--cCceEEEEeCCCCch---------hhhhccCCCCCCC-cEEEEeeCChHH-
Q 046889          229 IAGWLGIKELPDNDELVRASLLCKRIE--KQRVLVILDDLWVQI---------ELDRVGIPYGNDG-CKFLLTSRSRAA-  295 (333)
Q Consensus       229 i~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~~~~~g-~~vivTTr~~~v-  295 (333)
                           .-..............+.+.+.  .++.+|++|++....         +...+..|.-..| -++|-+|...+. 
T Consensus       255 -----~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~  329 (852)
T TIGR03345       255 -----QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYK  329 (852)
T ss_pred             -----hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHh
Confidence                 0000011112222222333222  367999999886431         2222344544444 355556654322 


Q ss_pred             ---------HhhcccceEecCCCCHHHHHHHHHhh
Q 046889          296 ---------CNQMQAHIVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       296 ---------~~~~~~~~~~l~~L~~~e~~~lf~~~  321 (333)
                               ..++  ..+.+.+++.++..++++..
T Consensus       330 ~~~~~d~AL~rRf--~~i~v~eps~~~~~~iL~~~  362 (852)
T TIGR03345       330 KYFEKDPALTRRF--QVVKVEEPDEETAIRMLRGL  362 (852)
T ss_pred             hhhhccHHHHHhC--eEEEeCCCCHHHHHHHHHHH
Confidence                     2222  24999999999999997543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.32  E-value=1.4e-05  Score=77.21  Aligned_cols=163  Identities=11%  Similarity=0.109  Sum_probs=90.9

Q ss_pred             cccccccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEK-VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+...+.|..++..++ .+.+.++|+.|+||||+|+.+.....-....      .. ..+..-...+.+.
T Consensus        10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~------~~-~pCg~C~sC~~I~   82 (702)
T PRK14960         10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGV------TS-TPCEVCATCKAVN   82 (702)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCC------CC-CCCccCHHHHHHh
Confidence            34456778999999999999998776 3577899999999999999998775321110      00 0001001111111


Q ss_pred             HHhC-----CCCCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-
Q 046889          231 GWLG-----IKELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-  295 (333)
Q Consensus       231 ~~l~-----~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-  295 (333)
                      ..-.     .........++.+. +...     ..++..++|+|++...  ..+..+.  +.....++.+|++|++..- 
T Consensus        83 ~g~hpDviEIDAAs~~~VddIRe-li~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI  161 (702)
T PRK14960         83 EGRFIDLIEIDAASRTKVEDTRE-LLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL  161 (702)
T ss_pred             cCCCCceEEecccccCCHHHHHH-HHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence            1000     00000111222211 1111     1346679999999754  2333331  2222346678888876542 


Q ss_pred             Hhhccc--ceEecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQA--HIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~--~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+..  ..+++++++.++....+.+.+
T Consensus       162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il  190 (702)
T PRK14960        162 PITVISRCLQFTLRPLAVDEITKHLGAIL  190 (702)
T ss_pred             hHHHHHhhheeeccCCCHHHHHHHHHHHH
Confidence            212222  238999999999888777654

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.31  E-value=5.9e-07  Score=87.38  Aligned_cols=141  Identities=11%  Similarity=0.075  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC----eEEEEEeCCCCC------
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD----EVAMAVVSQTPS------  221 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~----~~~wv~v~~~~~------  221 (333)
                      ...++++...+..|+  .++|+|++|+|||||++.+.+...+...           ++    ......++|++.      
T Consensus       336 ~~~l~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti  413 (547)
T PRK10522        336 GFSVGPINLTIKRGE--LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL  413 (547)
T ss_pred             CeEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhh
Confidence            346777777777788  9999999999999999999876543210           00    001123333321      


Q ss_pred             -------HHHHHHHHHHHhCCCCC----------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh-------cc
Q 046889          222 -------ITKIQDEIAGWLGIKEL----------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR-------VG  276 (333)
Q Consensus       222 -------~~~~~~~i~~~l~~~~~----------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~-------l~  276 (333)
                             ..+...+.++.++....          ...+ .+.++-.+.+.+-.++-+++|||+.+..|...       +.
T Consensus       414 ~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~  493 (547)
T PRK10522        414 GPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLL  493 (547)
T ss_pred             ccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence                   12234455666655311          1122 34455678889999999999999987644221       11


Q ss_pred             CCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          277 IPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       277 ~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ......+..+|++||+...... +++.+.+
T Consensus       494 ~~~~~~~~tvi~itH~~~~~~~-~d~i~~l  522 (547)
T PRK10522        494 PLLQEMGKTIFAISHDDHYFIH-ADRLLEM  522 (547)
T ss_pred             HHHHhCCCEEEEEEechHHHHh-CCEEEEE
Confidence            1112236779999998876543 4444444

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.31  E-value=5.9e-08  Score=78.96  Aligned_cols=144  Identities=16%  Similarity=0.229  Sum_probs=90.6

Q ss_pred             cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEE-------------------EEeCC
Q 046889          158 NFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAM-------------------AVVSQ  218 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w-------------------v~v~~  218 (333)
                      +-|+...+++.+...+.+++  +|++.||||+||||..-.+.+-.+++.   ..+|                   .+.+|
T Consensus        12 K~y~kr~Vv~~Vsl~v~~GE--iVGLLGPNGAGKTT~Fymi~Glv~~d~---G~i~ld~~diT~lPm~~RArlGigYLpQ   86 (243)
T COG1137          12 KSYKKRKVVNDVSLEVNSGE--IVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDEDITKLPMHKRARLGIGYLPQ   86 (243)
T ss_pred             HhhCCeeeeeeeeEEEcCCc--EEEEECCCCCCceeEEEEEEEEEecCC---ceEEECCcccccCChHHHhhcCcccccc
Confidence            34555566666666667788  999999999999996555544333221   1111                   12333


Q ss_pred             CCCH------H--------------------HHHHHHHHHhCCCC------CCCCCHHHHHHHHHHHHccCceEEEEeCC
Q 046889          219 TPSI------T--------------------KIQDEIAGWLGIKE------LPDNDELVRASLLCKRIEKQRVLVILDDL  266 (333)
Q Consensus       219 ~~~~------~--------------------~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv  266 (333)
                      .+++      +                    .-+.++++.|.+..      ..-+.-+.....+.+.|...+.+++||++
T Consensus        87 E~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEP  166 (243)
T COG1137          87 EASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEP  166 (243)
T ss_pred             cchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCC
Confidence            3211      1                    11335555555431      11122455667899999999999999988


Q ss_pred             CCc------hhhhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          267 WVQ------IELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       267 ~~~------~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ...      .+...+...+...|--|+||-||-.-...++++.|.+
T Consensus       167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi  212 (243)
T COG1137         167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYII  212 (243)
T ss_pred             ccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEE
Confidence            654      4455555555666888999999988776777666433

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.31  E-value=1.8e-06  Score=68.61  Aligned_cols=143  Identities=10%  Similarity=0.161  Sum_probs=84.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC-------C--C--------------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT-------P--S--------------  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-------~--~--------------  221 (333)
                      .++.+......++  .+.+.|++|+|||||++.+|....++.   ..+|+.-...       .  .              
T Consensus        26 V~~~vslsV~aGE--CvvL~G~SG~GKStllr~LYaNY~~d~---G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQ  100 (235)
T COG4778          26 VLRNVSLSVNAGE--CVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQ  100 (235)
T ss_pred             eeeceeEEecCcc--EEEeeCCCCCcHHHHHHHHHhccCCCC---ceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHH
Confidence            3445555556677  788999999999999999998876543   3344321111       0  0              


Q ss_pred             ---------------------------HHHHHHHHHHHhCCCC----CCCC---CHHHHHHHHHHHHccCceEEEEeCCC
Q 046889          222 ---------------------------ITKIQDEIAGWLGIKE----LPDN---DELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       222 ---------------------------~~~~~~~i~~~l~~~~----~~~~---~~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                                                 .....+.++.+++++.    ..+.   ..+++.-.|.+-+--.--+|+||++.
T Consensus       101 FLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPT  180 (235)
T COG4778         101 FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPT  180 (235)
T ss_pred             HHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCc
Confidence                                       0112233444444431    1111   11222233333333344478899887


Q ss_pred             Cchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEecCCCCHH
Q 046889          268 VQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRTLTEE  312 (333)
Q Consensus       268 ~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~~L~~~  312 (333)
                      ...|      .-.+....+..|+.+|=+=|++++-+.++++.+.+...++.
T Consensus       181 asLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~~~~~  231 (235)
T COG4778         181 ASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSAFSPR  231 (235)
T ss_pred             ccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecccCCcc
Confidence            5533      33333444566999999999999988888888888776543

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.30  E-value=5.3e-06  Score=69.57  Aligned_cols=123  Identities=14%  Similarity=0.170  Sum_probs=64.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhh------c-----------C----CCeEEEEEeCCCCCH------HHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEK------K-----------M----FDEVAMAVVSQTPSI------TKIQDEIAGW  232 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~------~-----------~----f~~~~wv~v~~~~~~------~~~~~~i~~~  232 (333)
                      +++|+|+||+|||||++.++.-....      .           .    ........+.|+++.      ..-..++++.
T Consensus        24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~  103 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA  103 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence            78999999999999999987543211      0           0    000111223333321      1223344444


Q ss_pred             hCCCC--CCCCCH-HHHHHHHHHHHc----cCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhc
Q 046889          233 LGIKE--LPDNDE-LVRASLLCKRIE----KQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQM  299 (333)
Q Consensus       233 l~~~~--~~~~~~-~~~~~~l~~~l~----~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~  299 (333)
                      -+...  ....+. +.....+...+.    ..+-+++||++.+..+.      ..+...... +..||++||+.+... .
T Consensus       104 ~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~-~  181 (197)
T cd03278         104 PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKGTME-A  181 (197)
T ss_pred             CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHh-h
Confidence            11111  111122 223334555443    45579999999876442      222222222 567999999998865 4


Q ss_pred             ccceE
Q 046889          300 QAHIV  304 (333)
Q Consensus       300 ~~~~~  304 (333)
                      ++..+
T Consensus       182 ~d~v~  186 (197)
T cd03278         182 ADRLY  186 (197)
T ss_pred             cceEE
Confidence            45443

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.30  E-value=5.5e-07  Score=97.42  Aligned_cols=140  Identities=12%  Similarity=0.205  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CH
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SI  222 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~  222 (333)
                      ...++.+...+..|+  +++|+|+||+|||||++.+.+...+...   +..           .....++|..      +.
T Consensus       943 k~aL~~lsl~I~~Ge--i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257       943 RPAVDRLNITFYENQ--ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTV 1020 (2272)
T ss_pred             ceEEEeeEEEEcCCc--EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCH
Confidence            345666666666777  9999999999999999999987543210   000           0011223321      11


Q ss_pred             ------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh-------
Q 046889          223 ------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-------  271 (333)
Q Consensus       223 ------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------  271 (333)
                                        ..-...+++.+++.....     .+ .+..+-.+...|..++-+++||++.+..|       
T Consensus      1021 ~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l 1100 (2272)
T TIGR01257      1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI 1100 (2272)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence                              112334566666642211     12 33445668888888999999999987644       


Q ss_pred             hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      |+.+ .... .|..||+|||+.+.+..++++.+.|
T Consensus      1101 ~~lL-~~l~-~g~TIIltTHdmdea~~laDrI~iL 1133 (2272)
T TIGR01257      1101 WDLL-LKYR-SGRTIIMSTHHMDEADLLGDRIAII 1133 (2272)
T ss_pred             HHHH-HHHh-CCCEEEEEECCHHHHHHhCCEEEEE
Confidence            2222 2222 3778999999999988887777444

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.30  E-value=1e-06  Score=85.69  Aligned_cols=141  Identities=17%  Similarity=0.170  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------  220 (333)
                      ...++++...+..|+  .++|+|++|+|||||++.+.+...+...   ++.            .....++|.+       
T Consensus       331 ~~~l~~~~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti  408 (544)
T TIGR01842       331 KPTLRGISFRLQAGE--ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTV  408 (544)
T ss_pred             ccccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccH
Confidence            356777777777788  9999999999999999999877543221   100            0112233332       


Q ss_pred             -----------CHHHHH--------HHHHHHhC--CC------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh--
Q 046889          221 -----------SITKIQ--------DEIAGWLG--IK------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE--  271 (333)
Q Consensus       221 -----------~~~~~~--------~~i~~~l~--~~------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--  271 (333)
                                 +.+++.        .+.++.+.  ..      ...-...+.++-.+.+.+-.++-+++|||+.+..|  
T Consensus       409 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~  488 (544)
T TIGR01842       409 AENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE  488 (544)
T ss_pred             HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHH
Confidence                       112211        12233331  11      01112234456678888888999999999987644  


Q ss_pred             ----hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 ----LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ----~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          +..........|..+|++||+...... .++.+.+
T Consensus       489 ~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~-~d~i~~l  526 (544)
T TIGR01842       489 GEQALANAIKALKARGITVVVITHRPSLLGC-VDKILVL  526 (544)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh-CCEEEEE
Confidence                222212222246789999999887653 4555544

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.30  E-value=2.1e-06  Score=86.16  Aligned_cols=140  Identities=11%  Similarity=0.165  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC----eEEEEEeCCCC-------
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD----EVAMAVVSQTP-------  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~----~~~wv~v~~~~-------  220 (333)
                      ...++++...+..|+  .++|+|++|+|||||++.+.+...+.+.           ++    .....+++|++       
T Consensus       492 ~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi  569 (710)
T TIGR03796       492 PPLIENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV  569 (710)
T ss_pred             CCcccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccH
Confidence            356778877777788  9999999999999999999877654321           00    01122334433       


Q ss_pred             -----------CHHHHHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 -----------SITKIQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 -----------~~~~~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                                 +.++ +.+.++..+..                 +..-...+.++-.+.+.+-.++-+++|||+.+..|-
T Consensus       570 ~eNi~l~~~~~~~~~-i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~  648 (710)
T TIGR03796       570 RDNLTLWDPTIPDAD-LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP  648 (710)
T ss_pred             HHHhhCCCCCCCHHH-HHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCH
Confidence                       1122 22223322221                 111112344566788888899999999999877442


Q ss_pred             hh---ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 DR---VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~~---l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..   +.-.+...++.+|++||....... .++.+.|
T Consensus       649 ~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl  684 (710)
T TIGR03796       649 ETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVL  684 (710)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEE
Confidence            11   100111247789999999887655 4444444

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.30  E-value=3.9e-06  Score=70.43  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+++|+||||+|||||++.+....
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            499999999999999999998655

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.30  E-value=2e-06  Score=77.37  Aligned_cols=153  Identities=14%  Similarity=0.183  Sum_probs=92.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCe----------------EEEE-------EeCCC
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDE----------------VAMA-------VVSQT  219 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~----------------~~wv-------~v~~~  219 (333)
                      .++.+...|..++  .++|||.+|+|||||.+.+......++.  |..                .+-+       +.++-
T Consensus       302 AVd~isl~L~~gq--TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR  379 (534)
T COG4172         302 AVDGISLTLRRGQ--TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR  379 (534)
T ss_pred             EeccceeEecCCC--eEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence            3566666677777  8999999999999999999877654321  110                0001       11111


Q ss_pred             CCH-----------------HHH---HHHHHHHhCCCC-------CCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-
Q 046889          220 PSI-----------------TKI---QDEIAGWLGIKE-------LPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-  271 (333)
Q Consensus       220 ~~~-----------------~~~---~~~i~~~l~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-  271 (333)
                      -++                 .+-   ....+...|+++       .+-...+.....|.+.+--|+-+++||++.+..| 
T Consensus       380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~  459 (534)
T COG4172         380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR  459 (534)
T ss_pred             cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence            111                 111   222344445531       1112234456678899999999999999998754 


Q ss_pred             -----hhhccCC-CCCCCcEEEEeeCChHHHhhcccceEecCC---CCHHHHHHHHH
Q 046889          272 -----LDRVGIP-YGNDGCKFLLTSRSRAACNQMQAHIVDVRT---LTEEESWRSAE  319 (333)
Q Consensus       272 -----~~~l~~~-~~~~g~~vivTTr~~~v~~~~~~~~~~l~~---L~~~e~~~lf~  319 (333)
                           .-.+... ....|-..+++||+..|...++...+.|+.   .....+.++|.
T Consensus       460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~  516 (534)
T COG4172         460 SVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA  516 (534)
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence                 1122111 133477799999999999999988865543   34444555554

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.29  E-value=2.4e-06  Score=83.87  Aligned_cols=138  Identities=16%  Similarity=0.164  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC--------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP--------  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~--------  220 (333)
                      ..++.+...+..|+  .++|+|++|+|||||++.+.+...+...   ++.            ....+++|++        
T Consensus       357 ~il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~  434 (582)
T PRK11176        357 PALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA  434 (582)
T ss_pred             ccccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence            46777777777788  8999999999999999999987654321   100            1122334432        


Q ss_pred             -----------CHHHHHHHHHHHhCCC--------C--------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 -----------SITKIQDEIAGWLGIK--------E--------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 -----------~~~~~~~~i~~~l~~~--------~--------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                                 +.++ +...++..+..        +        ....+ .+.++-.+.+.+-.++-+++||++.+..|-
T Consensus       435 ~Ni~~~~~~~~~~~~-i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~  513 (582)
T PRK11176        435 NNIAYARTEQYSREQ-IEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT  513 (582)
T ss_pred             HHHhcCCCCCCCHHH-HHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCH
Confidence                       1111 22222322211        0        01122 344566788888889999999999877442


Q ss_pred             h------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 D------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .      ...... ..++.+|++||+...... .+..+.+
T Consensus       514 ~t~~~i~~~l~~~-~~~~tvI~VtHr~~~~~~-~D~Ii~l  551 (582)
T PRK11176        514 ESERAIQAALDEL-QKNRTSLVIAHRLSTIEK-ADEILVV  551 (582)
T ss_pred             HHHHHHHHHHHHH-hCCCEEEEEecchHHHHh-CCEEEEE
Confidence            2      111211 236789999999987654 4444444

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.29  E-value=5.1e-06  Score=77.79  Aligned_cols=164  Identities=12%  Similarity=0.096  Sum_probs=90.4

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..+..|..++..++.. .+.++||.|+||||+|+.+.....-......   ..+.....    ...+.
T Consensus        13 RP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~   85 (484)
T PRK14956         13 RPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEIT   85 (484)
T ss_pred             CCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHH
Confidence            3445667899999999999999888753 5799999999999999999877542111000   00001111    11111


Q ss_pred             HHhCC-----CCCCCCCHHH---HHHHHHH-HHccCceEEEEeCCCCc--hhhhhccCCC--CCCCcEEEEeeCC-hHHH
Q 046889          231 GWLGI-----KELPDNDELV---RASLLCK-RIEKQRVLVILDDLWVQ--IELDRVGIPY--GNDGCKFLLTSRS-RAAC  296 (333)
Q Consensus       231 ~~l~~-----~~~~~~~~~~---~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~--~~~g~~vivTTr~-~~v~  296 (333)
                      .....     ........+.   +...+.. ...++..++|+|++...  ..++.+.-.+  +...+.+|++|.+ ..+.
T Consensus        86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~  165 (484)
T PRK14956         86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP  165 (484)
T ss_pred             ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence            11100     0001111111   1122211 12345679999999754  3344442211  2235555555554 3343


Q ss_pred             hhcccce--EecCCCCHHHHHHHHHhhc
Q 046889          297 NQMQAHI--VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       297 ~~~~~~~--~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..+..+.  |.+.+++.++..+.+.+.+
T Consensus       166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~  193 (484)
T PRK14956        166 ETILSRCQDFIFKKVPLSVLQDYSEKLC  193 (484)
T ss_pred             HHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence            3343333  8999999988888777654

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.27  E-value=1.2e-06  Score=85.96  Aligned_cols=139  Identities=16%  Similarity=0.174  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------  220 (333)
                      ...++++...+.+|+  .++|+|++|+|||||++.+.+...+...   ++.            ....+++|++       
T Consensus       348 ~~iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti  425 (588)
T PRK13657        348 RQGVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI  425 (588)
T ss_pred             CceecceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccH
Confidence            456788887777888  8999999999999999999877654321   000            0112234432       


Q ss_pred             -----------CHHHHHHHHHHHhCC-----------C-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 -----------SITKIQDEIAGWLGI-----------K-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 -----------~~~~~~~~i~~~l~~-----------~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                                 +.++ +...++..+.           +     .....+ .+.++-.+.+.+-.++-+++||++.+..|-
T Consensus       426 ~~Ni~~~~~~~~d~~-i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~  504 (588)
T PRK13657        426 EDNIRVGRPDATDEE-MRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDV  504 (588)
T ss_pred             HHHHhcCCCCCCHHH-HHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence                       1122 2222222221           1     001122 344556788888889999999999877442


Q ss_pred             h------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 D------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .      ...... ..+..+|++||+...... .++.+.+
T Consensus       505 ~t~~~i~~~l~~~-~~~~tvIiitHr~~~~~~-~D~ii~l  542 (588)
T PRK13657        505 ETEAKVKAALDEL-MKGRTTFIIAHRLSTVRN-ADRILVF  542 (588)
T ss_pred             HHHHHHHHHHHHH-hcCCEEEEEEecHHHHHh-CCEEEEE
Confidence            2      111211 236779999999887654 4444444

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.26  E-value=3.1e-06  Score=83.79  Aligned_cols=137  Identities=13%  Similarity=0.200  Sum_probs=82.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------C--------eEEEEEeCCCCC----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------D--------EVAMAVVSQTPS----  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~--------~~~wv~v~~~~~----  221 (333)
                      .++.+...+.+++  +++|+|++|+|||||++.+.+...+...   |        .        ......+++.+.    
T Consensus        23 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~  100 (648)
T PRK10535         23 VLKGISLDIYAGE--MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH  100 (648)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence            4555555566777  9999999999999999999977543210   0        0        011222333221    


Q ss_pred             --H------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          222 --I------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       222 --~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                        .                  .....++++.+++...     ...+ .+...-.+.+.|..++-+++||++....|    
T Consensus       101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~  180 (648)
T PRK10535        101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG  180 (648)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence              0                  0112334555555321     1112 34456678888889999999999986644    


Q ss_pred             --hhhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                        +..+.......|..+|++||+.+.... +++.+
T Consensus       181 ~~l~~ll~~l~~~g~tilivsH~~~~~~~-~d~i~  214 (648)
T PRK10535        181 EEVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVI  214 (648)
T ss_pred             HHHHHHHHHHHhcCCEEEEECCCHHHHHh-CCEEE
Confidence              222222223347889999999998764 44443

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.26  E-value=4.7e-06  Score=70.27  Aligned_cols=115  Identities=18%  Similarity=0.186  Sum_probs=58.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH-hh-cCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK-EK-KMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---LPDNDELVRASLLCKR  253 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~-~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~  253 (333)
                      .+++|+|+||+|||||++.+....- .+ +.|...-+..++.       ..+++..++..+   ........-...+...
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~-------~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i  102 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPL-------VDRIFTRIGAEDSISDGRSTFMAELLELKEI  102 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCC-------cCEEEEEecCcccccCCceeHHHHHHHHHHH
Confidence            4899999999999999999984432 11 1111111111111       001111111110   0111111112223333


Q ss_pred             H--ccCceEEEEeCCCCchhh-------hhccCCCCCCCcEEEEeeCChHHHhhcc
Q 046889          254 I--EKQRVLVILDDLWVQIEL-------DRVGIPYGNDGCKFLLTSRSRAACNQMQ  300 (333)
Q Consensus       254 l--~~k~~LlVlDdv~~~~~~-------~~l~~~~~~~g~~vivTTr~~~v~~~~~  300 (333)
                      +  ...+.++++|++....+.       ..+.......++.+|++||+.++...+.
T Consensus       103 ~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~  158 (202)
T cd03243         103 LSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPE  158 (202)
T ss_pred             HHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhh
Confidence            3  358899999999654321       1111112234788999999998876554

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.26  E-value=1.6e-05  Score=74.01  Aligned_cols=169  Identities=14%  Similarity=0.194  Sum_probs=90.4

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE-eCCCCCHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV-VSQTPSITKIQDEIA  230 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~  230 (333)
                      |.....++|.+...+.|..++..++.. -+.++||.|+||||+|+.+.....-........|.. ....+..-...+.+.
T Consensus        12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~   91 (397)
T PRK14955         12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD   91 (397)
T ss_pred             CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence            445567889999999999999887654 488999999999999999987764221111111110 001111111111111


Q ss_pred             HHhCCC-----CCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCC-hHH
Q 046889          231 GWLGIK-----ELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRS-RAA  295 (333)
Q Consensus       231 ~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~-~~v  295 (333)
                      ..-...     .......++.. .+.+.+     .+++-++|+||+...  ..++.+.  +..+...+.+|++|.+ ..+
T Consensus        92 ~~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl  170 (397)
T PRK14955         92 AGTSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI  170 (397)
T ss_pred             cCCCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence            110000     00111122222 233333     245668999998644  2333331  2222335666665543 333


Q ss_pred             Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+..+  .+++.++++++....+.+.+
T Consensus       171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~  199 (397)
T PRK14955        171 PATIASRCQRFNFKRIPLEEIQQQLQGIC  199 (397)
T ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            3333322  28899999988887777654

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.26  E-value=1.8e-06  Score=86.49  Aligned_cols=140  Identities=14%  Similarity=0.194  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC----eEEEEEeCCCCC-------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD----EVAMAVVSQTPS-------  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~----~~~wv~v~~~~~-------  221 (333)
                      ..++++...+.+|+  .++|+|++|+|||||++.+.+...+.+.           ++    ......++|++.       
T Consensus       495 ~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIr  572 (711)
T TIGR00958       495 PVLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR  572 (711)
T ss_pred             ccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHH
Confidence            46777887777888  9999999999999999999987654321           00    001233444321       


Q ss_pred             ----------HHHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh
Q 046889          222 ----------ITKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR  274 (333)
Q Consensus       222 ----------~~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~  274 (333)
                                .++-+.+.++..+..                .....+ .+.++-.+.+.+-.++-+++|||+.+..|-..
T Consensus       573 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t  652 (711)
T TIGR00958       573 ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC  652 (711)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence                      112222333333321                001122 34455668888889999999999987644211


Q ss_pred             ---ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          275 ---VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       275 ---l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         +.......+..+|++||....... .+.++.+
T Consensus       653 e~~i~~~~~~~~~TvIiItHrl~~i~~-aD~IivL  686 (711)
T TIGR00958       653 EQLLQESRSRASRTVLLIAHRLSTVER-ADQILVL  686 (711)
T ss_pred             HHHHHHhhccCCCeEEEEeccHHHHHh-CCEEEEE
Confidence               111111236789999999887654 3444444

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.25  E-value=1e-05  Score=75.06  Aligned_cols=69  Identities=22%  Similarity=0.253  Sum_probs=56.6

Q ss_pred             ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQD  227 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~  227 (333)
                      ...++.+..++.+...+..++  .+.+.||+|+|||++|+.++........+....|+.+++..+..+++.
T Consensus       175 ~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~  243 (459)
T PRK11331        175 NDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ  243 (459)
T ss_pred             hcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence            456777888999999888766  788899999999999999998876555677888999998887666553

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.25  E-value=9.4e-06  Score=76.60  Aligned_cols=131  Identities=14%  Similarity=0.145  Sum_probs=78.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR  258 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~  258 (333)
                      .-+.|+|+.|+|||.|++.+.+.......-..++++  +    ..++...+...++...       .....+.+.+. ..
T Consensus       142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv--~----~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~  207 (450)
T PRK14087        142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM--S----GDEFARKAVDILQKTH-------KEIEQFKNEIC-QN  207 (450)
T ss_pred             CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE--E----HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cC
Confidence            358899999999999999999876532221223333  2    2456666665554310       11223444443 45


Q ss_pred             eEEEEeCCCCch-------hhhhccCCCCCCCcEEEEeeCChH---------HHhhcccce-EecCCCCHHHHHHHHHhh
Q 046889          259 VLVILDDLWVQI-------ELDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAHI-VDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       259 ~LlVlDdv~~~~-------~~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~~-~~l~~L~~~e~~~lf~~~  321 (333)
                      .+||+||+....       .+..+.-.....|..||+|+....         +..++.... +.+++++.++..+++.++
T Consensus       208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~  287 (450)
T PRK14087        208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE  287 (450)
T ss_pred             CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence            589999996431       122221122333567888876542         122333333 789999999999999988


Q ss_pred             cc
Q 046889          322 RR  323 (333)
Q Consensus       322 a~  323 (333)
                      +-
T Consensus       288 ~~  289 (450)
T PRK14087        288 IK  289 (450)
T ss_pred             HH
Confidence            74

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.25  E-value=1.5e-06  Score=85.36  Aligned_cols=139  Identities=16%  Similarity=0.178  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------  220 (333)
                      ...++++...+.+|+  .++|+|++|+|||||++.+.+.. +...   ++.            .....++|++       
T Consensus       363 ~~vL~~i~l~i~~G~--~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI  439 (588)
T PRK11174        363 KTLAGPLNFTLPAGQ--RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTL  439 (588)
T ss_pred             CeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCH
Confidence            345677776667777  99999999999999999998776 3221   000            0123444443       


Q ss_pred             -----------CHHHHHH--------HHHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889          221 -----------SITKIQD--------EIAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD  273 (333)
Q Consensus       221 -----------~~~~~~~--------~i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~  273 (333)
                                 +.+++.+        +.+..+  |.+     .....+ .+.++-.|.+.+-.++-+++|||+.+..|-.
T Consensus       440 ~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~  519 (588)
T PRK11174        440 RDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH  519 (588)
T ss_pred             HHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence                       2222211        112222  111     001122 3445667888888899999999998774422


Q ss_pred             h------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 R------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .      ..... ..+..+|++||....... .+..+.+
T Consensus       520 te~~i~~~l~~~-~~~~TvIiItHrl~~i~~-aD~Iivl  556 (588)
T PRK11174        520 SEQLVMQALNAA-SRRQTTLMVTHQLEDLAQ-WDQIWVM  556 (588)
T ss_pred             HHHHHHHHHHHH-hCCCEEEEEecChHHHHh-CCEEEEE
Confidence            1      11111 235678999998877654 3444444

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.24  E-value=2e-05  Score=76.63  Aligned_cols=166  Identities=11%  Similarity=0.152  Sum_probs=90.3

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCC--CeEEEEEeCCCCCHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMF--DEVAMAVVSQTPSITKIQDE  228 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f--~~~~wv~v~~~~~~~~~~~~  228 (333)
                      .|.....++|.+..+..|...+..++. +.+.++|+.|+||||+|+.+.....-....  .....    ..+..-...+.
T Consensus        11 RP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~   86 (618)
T PRK14951         11 RPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD   86 (618)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence            344566789999999999999988765 456899999999999999997665321100  00000    01111111222


Q ss_pred             HHHH-----hCCCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-
Q 046889          229 IAGW-----LGIKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR-  293 (333)
Q Consensus       229 i~~~-----l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~-  293 (333)
                      |...     +.+........++... +.+..     .++..++|||++...  ..++.+.  +......+.+|++|.+. 
T Consensus        87 i~~g~h~D~~eldaas~~~Vd~iRe-li~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~  165 (618)
T PRK14951         87 IDSGRFVDYTELDAASNRGVDEVQQ-LLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ  165 (618)
T ss_pred             HHcCCCCceeecCcccccCHHHHHH-HHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence            2110     0000001111222222 22221     134569999999754  3344432  22223366677666543 


Q ss_pred             HHHhhccc--ceEecCCCCHHHHHHHHHhhc
Q 046889          294 AACNQMQA--HIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       294 ~v~~~~~~--~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      .+...+..  ..+.++++++++....+.+.+
T Consensus       166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~  196 (618)
T PRK14951        166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVL  196 (618)
T ss_pred             hhhHHHHHhceeeecCCCCHHHHHHHHHHHH
Confidence            33222322  338999999999888887654

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.23  E-value=4.6e-05  Score=64.02  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=37.8

Q ss_pred             cccccccccchHHHHHHHHHHhh-----cCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMK-----DEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .|.....|+|.+..++.+.-.+.     .+.+.-+.++||+|+||||||+.+.+...
T Consensus        19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~   75 (233)
T PF05496_consen   19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG   75 (233)
T ss_dssp             S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred             CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC
Confidence            45567889999999888765543     23466789999999999999999998876

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.23  E-value=2.1e-05  Score=79.11  Aligned_cols=161  Identities=12%  Similarity=0.096  Sum_probs=88.3

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      |.....++|.+..++.|...+..+++. .+.++|+.|+||||+|+.+...+.-......       ..+..-..++.|..
T Consensus        11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~   83 (824)
T PRK07764         11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAP   83 (824)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHc
Confidence            444567899999999999999887654 5789999999999999999877642111100       00000000111110


Q ss_pred             H-------hCCCCCCCCCHHHHHHHHHH-----HHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-
Q 046889          232 W-------LGIKELPDNDELVRASLLCK-----RIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-  294 (333)
Q Consensus       232 ~-------l~~~~~~~~~~~~~~~~l~~-----~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-  294 (333)
                      .       +.+........++... +.+     -..++..++|||++...  ..++.|.  +......+.+|++|.+.+ 
T Consensus        84 g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k  162 (824)
T PRK07764         84 GGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK  162 (824)
T ss_pred             CCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence            0       0000001111222221 222     12356678999998754  2333331  222223666666665443 


Q ss_pred             HHhhcccce--EecCCCCHHHHHHHHHhh
Q 046889          295 ACNQMQAHI--VDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       295 v~~~~~~~~--~~l~~L~~~e~~~lf~~~  321 (333)
                      +...+.++.  |.+.+++.++....+.+.
T Consensus       163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~i  191 (824)
T PRK07764        163 VIGTIRSRTHHYPFRLVPPEVMRGYLERI  191 (824)
T ss_pred             hhHHHHhheeEEEeeCCCHHHHHHHHHHH
Confidence            443344333  889999988887777654

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.23  E-value=9.1e-06  Score=74.93  Aligned_cols=148  Identities=16%  Similarity=0.238  Sum_probs=85.5

Q ss_pred             cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889          156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI  222 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  222 (333)
                      ...+.|.+..++.|...+..             ...+-+.|+||+|+|||+||+.+++...  ..|     +.+..    
T Consensus       121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~~----  189 (364)
T TIGR01242       121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG----  189 (364)
T ss_pred             HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecch----
Confidence            34578889988888776631             1234689999999999999999998764  222     22211    


Q ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH-ccCceEEEEeCCCCch----------------hhhhccCC---C-CC
Q 046889          223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRI-EKQRVLVILDDLWVQI----------------ELDRVGIP---Y-GN  281 (333)
Q Consensus       223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~---~-~~  281 (333)
                      ..+...   .++       ........+.+.. ...+.+|+|||++...                .+..+...   + ..
T Consensus       190 ~~l~~~---~~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~  259 (364)
T TIGR01242       190 SELVRK---YIG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR  259 (364)
T ss_pred             HHHHHH---hhh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence            111111   011       0111222222222 3467899999986431                12222111   1 12


Q ss_pred             CCcEEEEeeCChHHHh-hc-c----cceEecCCCCHHHHHHHHHhhccc
Q 046889          282 DGCKFLLTSRSRAACN-QM-Q----AHIVDVRTLTEEESWRSAEGKRRV  324 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~-~~-~----~~~~~l~~L~~~e~~~lf~~~a~~  324 (333)
                      .+..||.||+..+... .+ .    ...+.+...+.++..++|+.++..
T Consensus       260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~  308 (364)
T TIGR01242       260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK  308 (364)
T ss_pred             CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc
Confidence            3667888888654321 11 1    223889999999999999987654

Many proteins may score above the trusted cutoff because an internal

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.22  E-value=4.1e-05  Score=68.51  Aligned_cols=160  Identities=18%  Similarity=0.191  Sum_probs=103.5

Q ss_pred             ccccchHHHHHHHHHHhhcCCc---eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046889          157 YNFKSRESTMKDIMEAMKDEKV---SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL  233 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~~~---~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l  233 (333)
                      +.+.+|+.+...+...+.+..+   .++-|.|..|.|||.+++.+++...     ...+|+.+-+.++...+++.|+...
T Consensus         6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~   80 (438)
T KOG2543|consen    6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKS   80 (438)
T ss_pred             cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHh
Confidence            4677899999999998876543   4568899999999999999998763     3467999999999999999999998


Q ss_pred             CCCCCCCCCH-------HHHHHHHHH--HHc--cCceEEEEeCCCCchhhhhccCC--------CCCCCcEEEEeeCChH
Q 046889          234 GIKELPDNDE-------LVRASLLCK--RIE--KQRVLVILDDLWVQIELDRVGIP--------YGNDGCKFLLTSRSRA  294 (333)
Q Consensus       234 ~~~~~~~~~~-------~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~l~~~--------~~~~g~~vivTTr~~~  294 (333)
                      +..+......       ......+.+  ...  ++..+||||++....|.....++        .+.+...|++.....+
T Consensus        81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e  160 (438)
T KOG2543|consen   81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE  160 (438)
T ss_pred             ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence            7432221111       112222333  122  35789999998766554433221        1222343444333322


Q ss_pred             H--Hhhcccce---EecCCCCHHHHHHHHHhh
Q 046889          295 A--CNQMQAHI---VDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       295 v--~~~~~~~~---~~l~~L~~~e~~~lf~~~  321 (333)
                      -  ...++...   +....-+.+|...++.+.
T Consensus       161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~  192 (438)
T KOG2543|consen  161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRD  192 (438)
T ss_pred             HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence            2  22234433   667777888888877654

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.22  E-value=3.3e-05  Score=73.06  Aligned_cols=163  Identities=12%  Similarity=0.103  Sum_probs=89.0

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..++.|...+..++.. -+.++|+.|+||||+|+.+.....-.....       ..++..-.....|.
T Consensus         8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~-------~~pCg~C~~C~~i~   80 (491)
T PRK14964          8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPT-------SDPCGTCHNCISIK   80 (491)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCC-------CCCccccHHHHHHh
Confidence            3445567899999999999888877654 688999999999999999976542111000       00001111111111


Q ss_pred             HHhCCC-----CCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCC-hHH
Q 046889          231 GWLGIK-----ELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRS-RAA  295 (333)
Q Consensus       231 ~~l~~~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~-~~v  295 (333)
                      +....+     .......++... +.+.     +.++..++|+|++...  ..++.+.  +..+...+.+|++|.+ ..+
T Consensus        81 ~~~~~Dv~eidaas~~~vddIR~-Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl  159 (491)
T PRK14964         81 NSNHPDVIEIDAASNTSVDDIKV-ILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKI  159 (491)
T ss_pred             ccCCCCEEEEecccCCCHHHHHH-HHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHH
Confidence            111110     000111222111 1111     1246679999998644  2333331  2222336666666644 344


Q ss_pred             Hhhcccce--EecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQAHI--VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~~~--~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+..+.  +.+.+++.++....+.+.+
T Consensus       160 ~~tI~SRc~~~~f~~l~~~el~~~L~~ia  188 (491)
T PRK14964        160 PVTIISRCQRFDLQKIPTDKLVEHLVDIA  188 (491)
T ss_pred             HHHHHHhheeeecccccHHHHHHHHHHHH
Confidence            33333333  8899999988888777654

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.22  E-value=1.6e-06  Score=73.02  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQ  199 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~  199 (333)
                      +++.|+||||+|||||++.+.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            589999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.22  E-value=1.3e-06  Score=84.99  Aligned_cols=140  Identities=14%  Similarity=0.136  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-------  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-------  221 (333)
                      ..++++...+..|+  .++|+|++|+|||||++.+.+...+...   ++.            .....++|++.       
T Consensus       356 ~~l~~vs~~i~~G~--~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~  433 (555)
T TIGR01194       356 FALGPIDLRIAQGD--IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG  433 (555)
T ss_pred             ceeccceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhh
Confidence            36777777777788  9999999999999999999876543211   000            00112233221       


Q ss_pred             -------HHHHHHHHHHHhCCCCC-----------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h-hhc
Q 046889          222 -------ITKIQDEIAGWLGIKEL-----------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L-DRV  275 (333)
Q Consensus       222 -------~~~~~~~i~~~l~~~~~-----------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~-~~l  275 (333)
                             ..+-..+.++.++..+.           ...+ .+..+-.+.+.+-.++-+++||++.+..|      + ..+
T Consensus       434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l  513 (555)
T TIGR01194       434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL  513 (555)
T ss_pred             cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence                   12233455666665421           1122 34445578888889999999999987643      1 112


Q ss_pred             cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          276 GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       276 ~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .......|..+|++||+..... .++..+.+
T Consensus       514 ~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l  543 (555)
T TIGR01194       514 LPDLKRQGKTIIIISHDDQYFE-LADQIIKL  543 (555)
T ss_pred             HHHHHhCCCEEEEEeccHHHHH-hCCEEEEE
Confidence            1112234678999999987654 44555544

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.22  E-value=1.9e-05  Score=75.58  Aligned_cols=162  Identities=12%  Similarity=0.113  Sum_probs=87.0

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..++.|..++..++.. .+.++||.|+||||+|+.+.....-...+..       ..+..-...+.|.
T Consensus        11 RP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~   83 (509)
T PRK14958         11 RPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA-------NPCNDCENCREID   83 (509)
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc-------ccCCCCHHHHHHh
Confidence            3445667899999999999999877654 4789999999999999999877642211110       0000000111110


Q ss_pred             HHh-----CCCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-H
Q 046889          231 GWL-----GIKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-A  295 (333)
Q Consensus       231 ~~l-----~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v  295 (333)
                      ..-     ..........++... +.+.+     .++..++|+|++...  ..++.+.  +..+...+.+|++|.+.. +
T Consensus        84 ~g~~~d~~eidaas~~~v~~iR~-l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl  162 (509)
T PRK14958         84 EGRFPDLFEVDAASRTKVEDTRE-LLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKL  162 (509)
T ss_pred             cCCCceEEEEcccccCCHHHHHH-HHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhc
Confidence            000     000001111222211 11111     245679999999754  2333331  222233677777665543 2


Q ss_pred             Hhhcccce--EecCCCCHHHHHHHHHhh
Q 046889          296 CNQMQAHI--VDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       296 ~~~~~~~~--~~l~~L~~~e~~~lf~~~  321 (333)
                      ...+..+.  +++++++.++....+.+.
T Consensus       163 ~~tI~SRc~~~~f~~l~~~~i~~~l~~i  190 (509)
T PRK14958        163 PVTVLSRCLQFHLAQLPPLQIAAHCQHL  190 (509)
T ss_pred             hHHHHHHhhhhhcCCCCHHHHHHHHHHH
Confidence            22233222  788999888766654443

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.22  E-value=9.2e-07  Score=74.46  Aligned_cols=118  Identities=14%  Similarity=0.055  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC---HHHHHHHHHHHH-
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDND---ELVRASLLCKRI-  254 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l-  254 (333)
                      .++.|+|++|.||||+++.+....--. +..+  ++.. .... -.+.+.|+..++..+.....   ...-...+...+ 
T Consensus        30 ~~~~l~G~n~~GKstll~~i~~~~~la-~~G~--~vpa-~~~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~  104 (204)
T cd03282          30 RFHIITGPNMSGKSTYLKQIALLAIMA-QIGC--FVPA-EYAT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILD  104 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHH-HcCC--Ccch-hhcC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHHH
Confidence            489999999999999999987553211 1111  1100 0011 12233444444443211111   111111222222 


Q ss_pred             -ccCceEEEEeCCCCc---hhhh----hccCCCCCCCcEEEEeeCChHHHhhccc
Q 046889          255 -EKQRVLVILDDLWVQ---IELD----RVGIPYGNDGCKFLLTSRSRAACNQMQA  301 (333)
Q Consensus       255 -~~k~~LlVlDdv~~~---~~~~----~l~~~~~~~g~~vivTTr~~~v~~~~~~  301 (333)
                       ..++.|+++|++...   .+-.    .+...+...|+.+|++||+.+++..+..
T Consensus       105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~  159 (204)
T cd03282         105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGN  159 (204)
T ss_pred             hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence             357889999998543   2211    1111223348899999999999876653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.22  E-value=7.2e-06  Score=77.24  Aligned_cols=130  Identities=18%  Similarity=0.183  Sum_probs=77.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR  258 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~  258 (333)
                      .-+.|+|+.|+|||+|++.+++.......-..+.|+.      ..+++..+...+...     ..    ..+.+.+..+.
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~-----~~----~~f~~~~~~~~  195 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT------SEKFLNDLVDSMKEG-----KL----NEFREKYRKKV  195 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHhcc-----cH----HHHHHHHHhcC
Confidence            3589999999999999999999875322112334443      244555555554321     11    22344444456


Q ss_pred             eEEEEeCCCCch-------hhhhccCCCCCCCcEEEEee-CChHHHh--------hcccc-eEecCCCCHHHHHHHHHhh
Q 046889          259 VLVILDDLWVQI-------ELDRVGIPYGNDGCKFLLTS-RSRAACN--------QMQAH-IVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       259 ~LlVlDdv~~~~-------~~~~l~~~~~~~g~~vivTT-r~~~v~~--------~~~~~-~~~l~~L~~~e~~~lf~~~  321 (333)
                      .+|++||+....       .+..+.......|..+|+|| +.+.-..        ++... .+.+++.+.+.-..+++++
T Consensus       196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~  275 (440)
T PRK14088        196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM  275 (440)
T ss_pred             CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence            799999997431       22222111223355688877 4443322        22222 2789999999999999888


Q ss_pred             cc
Q 046889          322 RR  323 (333)
Q Consensus       322 a~  323 (333)
                      +-
T Consensus       276 ~~  277 (440)
T PRK14088        276 LE  277 (440)
T ss_pred             HH
Confidence            64

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.22  E-value=1.1e-05  Score=69.32  Aligned_cols=62  Identities=18%  Similarity=0.228  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHccCc--eEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          244 LVRASLLCKRIEKQR--VLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       244 ~~~~~~l~~~l~~k~--~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.....+...+..++  -+++||++.+..+      +..+.......|..||++||+.+.+. ++++.+.|
T Consensus       142 ~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l  211 (226)
T cd03270         142 EAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDI  211 (226)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEe
Confidence            344556777777665  6999999986644      22222222334778999999999875 56666666

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.22  E-value=2.5e-06  Score=83.94  Aligned_cols=139  Identities=13%  Similarity=0.154  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI------  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~------  222 (333)
                      ..++++...+.+|+  .++|+|++|+|||||++.+.+...+.+.   ++.            .....++|++.+      
T Consensus       355 ~il~~i~l~i~~Ge--~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~  432 (592)
T PRK10790        355 LVLQNINLSVPSRG--FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL  432 (592)
T ss_pred             ceeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHH
Confidence            46777777777788  9999999999999999999877654321   110            112334444311      


Q ss_pred             ----------HHHHHHHHHHhCCC--------C--------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh-
Q 046889          223 ----------TKIQDEIAGWLGIK--------E--------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR-  274 (333)
Q Consensus       223 ----------~~~~~~i~~~l~~~--------~--------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~-  274 (333)
                                .+-+.+.++..+..        +        ....+ .+.++-.+.+.+-.++-+++||++.+..|-.. 
T Consensus       433 ~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~  512 (592)
T PRK10790        433 ANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE  512 (592)
T ss_pred             HHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence                      11223334433321        0        01112 34455668888888889999999987644221 


Q ss_pred             -----ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          275 -----VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       275 -----l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                           ..... ..++.+|++||....... .+..+.+
T Consensus       513 ~~i~~~l~~~-~~~~tvIivtHr~~~l~~-~D~ii~l  547 (592)
T PRK10790        513 QAIQQALAAV-REHTTLVVIAHRLSTIVE-ADTILVL  547 (592)
T ss_pred             HHHHHHHHHH-hCCCEEEEEecchHHHHh-CCEEEEE
Confidence                 11111 125789999999877654 3444444

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.21  E-value=3.2e-06  Score=74.07  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=65.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE---eCCCCCHHHHHHHHHHHhC-CCCC------CCCCHH
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV---VSQTPSITKIQDEIAGWLG-IKEL------PDNDEL  244 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~---v~~~~~~~~~~~~i~~~l~-~~~~------~~~~~~  244 (333)
                      .++...++|+|++|+|||||++.+.......   ...+++.   +.......    ++...+. .+..      ...+..
T Consensus       108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~~r~~v~~~~  180 (270)
T TIGR02858       108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVGIRTDVLDGC  180 (270)
T ss_pred             CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHH----HHHHHhcccccccccccccccccc
Confidence            4545689999999999999999999877532   1222221   11000112    2222211 1100      111111


Q ss_pred             HHHHHHHHHHc-cCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHh
Q 046889          245 VRASLLCKRIE-KQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACN  297 (333)
Q Consensus       245 ~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~  297 (333)
                      .....+...+. ..+-++++|++.....+..+.... ..|..+|+|||+..+..
T Consensus       181 ~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~-~~G~~vI~ttH~~~~~~  233 (270)
T TIGR02858       181 PKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL-HAGVSIIATAHGRDVED  233 (270)
T ss_pred             hHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH-hCCCEEEEEechhHHHH
Confidence            12223444443 588999999998777666553332 35888999999877643

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.21  E-value=1.5e-05  Score=70.01  Aligned_cols=149  Identities=18%  Similarity=0.212  Sum_probs=75.5

Q ss_pred             ccccchHHHHHHHHHH---hh------------cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCC
Q 046889          157 YNFKSRESTMKDIMEA---MK------------DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPS  221 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~---l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~  221 (333)
                      ..++|.+.+++.+...   +.            .+....+.++||+|+||||+|+.+..............++.++.   
T Consensus         6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---   82 (261)
T TIGR02881         6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---   82 (261)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH---
Confidence            3467776666555432   21            12345678999999999999999988753222111112232221   


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcc-CceEEEEeCCCCc----------hhhhhccCCCCC-C-CcEEEE
Q 046889          222 ITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEK-QRVLVILDDLWVQ----------IELDRVGIPYGN-D-GCKFLL  288 (333)
Q Consensus       222 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~----------~~~~~l~~~~~~-~-g~~viv  288 (333)
                       .++...   .++      ...    ..+.+.+.. ...+|++||+...          ..+..+...... . ...+|+
T Consensus        83 -~~l~~~---~~g------~~~----~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vil  148 (261)
T TIGR02881        83 -ADLVGE---YIG------HTA----QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLIL  148 (261)
T ss_pred             -HHhhhh---hcc------chH----HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEe
Confidence             111110   011      011    112222221 2458999999742          122333211111 1 234455


Q ss_pred             eeCChH----------HHhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889          289 TSRSRA----------ACNQMQAHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       289 TTr~~~----------v~~~~~~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      ++...+          +..++ ...+.+++++.++..+++++.+.
T Consensus       149 a~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~el~~Il~~~~~  192 (261)
T TIGR02881       149 AGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVEELMEIAERMVK  192 (261)
T ss_pred             cCCcchhHHHHhcChHHHhcc-ceEEEECCCCHHHHHHHHHHHHH
Confidence            543322          22222 22388999999999999987764

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.21  E-value=1e-05  Score=67.14  Aligned_cols=115  Identities=16%  Similarity=0.100  Sum_probs=59.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHHHHcc
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLCKRIEK  256 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~  256 (333)
                      ++.|+|+||.||||+++.+.-.... .+..+.++..-..    -.....++..++..+.   ...........+...+..
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~l-a~~G~~v~a~~~~----~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~   75 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIM-AQIGSFVPAESAE----LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN   75 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHH-HHhCCCeeehheE----ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence            3679999999999999999833211 1111111110000    0001111122222111   112233334445666655


Q ss_pred             --CceEEEEeCCCCchhhh-------hccCCCCC-CCcEEEEeeCChHHHhhc
Q 046889          257 --QRVLVILDDLWVQIELD-------RVGIPYGN-DGCKFLLTSRSRAACNQM  299 (333)
Q Consensus       257 --k~~LlVlDdv~~~~~~~-------~l~~~~~~-~g~~vivTTr~~~v~~~~  299 (333)
                        ++.|+++|++....+..       .+...... .++.+|++||+.++...+
T Consensus        76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~  128 (185)
T smart00534       76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLA  128 (185)
T ss_pred             CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHh
Confidence              88999999997553311       11111222 378899999999876543

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.21  E-value=6.7e-06  Score=64.82  Aligned_cols=146  Identities=10%  Similarity=0.201  Sum_probs=92.0

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh--------cCCC------------------
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK--------KMFD------------------  209 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------~~f~------------------  209 (333)
                      ...|||....+-+|......++  .+.+.||+|.|||||.+.+.-...++        .+|+                  
T Consensus         8 in~~yg~~q~lfdi~l~~~~ge--tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vg   85 (242)
T COG4161           8 INCFYGAHQALFDITLDCPEGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG   85 (242)
T ss_pred             cccccccchheeeeeecCCCCC--EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhh
Confidence            3457787777777776666677  88999999999999999775433221        2332                  


Q ss_pred             -----eEEEEEeC--CC-------------CCHHHHHHHHHHHhCCCCCCC------CCHHHHHHHHHHHHccCceEEEE
Q 046889          210 -----EVAMAVVS--QT-------------PSITKIQDEIAGWLGIKELPD------NDELVRASLLCKRIEKQRVLVIL  263 (333)
Q Consensus       210 -----~~~wv~v~--~~-------------~~~~~~~~~i~~~l~~~~~~~------~~~~~~~~~l~~~l~~k~~LlVl  263 (333)
                           ...|-...  ++             .....-...+++++.+.+..+      ....+....+.+.|.-++-++++
T Consensus        86 mvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllf  165 (242)
T COG4161          86 MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLF  165 (242)
T ss_pred             hhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEee
Confidence                 12232110  00             001122345666666543222      22345566788888889999999


Q ss_pred             eCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          264 DDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       264 Ddv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      |++....+      .-++.-.+...|-.=+|+||.-+++....++.
T Consensus       166 deptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~v  211 (242)
T COG4161         166 DEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRV  211 (242)
T ss_pred             cCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhhe
Confidence            99876533      22333344556778889999999999888776

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.21  E-value=1.8e-05  Score=71.60  Aligned_cols=143  Identities=14%  Similarity=0.208  Sum_probs=81.1

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+...+.+..++..++. ..+.++|+.|+||||+++.+++...  ..   ...+..+. ... ..++..+
T Consensus        16 rP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~~---~~~i~~~~-~~~-~~i~~~l   88 (316)
T PHA02544         16 RPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--AE---VLFVNGSD-CRI-DFVRNRL   88 (316)
T ss_pred             CCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--cc---ceEeccCc-ccH-HHHHHHH
Confidence            344556789999999999999887764 4666689999999999999987652  11   12222222 111 1111111


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHH--HccCceEEEEeCCCCc--hh----hhhccCCCCCCCcEEEEeeCChHH-Hhhccc
Q 046889          231 GWLGIKELPDNDELVRASLLCKR--IEKQRVLVILDDLWVQ--IE----LDRVGIPYGNDGCKFLLTSRSRAA-CNQMQA  301 (333)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~--~~----~~~l~~~~~~~g~~vivTTr~~~v-~~~~~~  301 (333)
                      ..                 +...  +...+.++|+||+...  .+    +..+ +.....++.+|+||....- ...+..
T Consensus        89 ~~-----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~-le~~~~~~~~Ilt~n~~~~l~~~l~s  150 (316)
T PHA02544         89 TR-----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSF-MEAYSKNCSFIITANNKNGIIEPLRS  150 (316)
T ss_pred             HH-----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHH-HHhcCCCceEEEEcCChhhchHHHHh
Confidence            11                 1111  1135668999998644  11    2221 1112346788888876532 111222


Q ss_pred             c--eEecCCCCHHHHHHHHH
Q 046889          302 H--IVDVRTLTEEESWRSAE  319 (333)
Q Consensus       302 ~--~~~l~~L~~~e~~~lf~  319 (333)
                      +  .+.++..+.++...++.
T Consensus       151 R~~~i~~~~p~~~~~~~il~  170 (316)
T PHA02544        151 RCRVIDFGVPTKEEQIEMMK  170 (316)
T ss_pred             hceEEEeCCCCHHHHHHHHH
Confidence            2  26666667776655543

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.20  E-value=7.9e-06  Score=66.31  Aligned_cols=113  Identities=17%  Similarity=0.167  Sum_probs=62.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRA  247 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  247 (333)
                      ++..|+||||+||||+++.+.-..-...           .+....|...-           +....+.     ...+...
T Consensus        22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----------i~~~~~l-----S~G~~~~   85 (162)
T cd03227          22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-----------IFTRLQL-----SGGEKEL   85 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-----------ehheeec-----cccHHHH
Confidence            4899999999999999998753332111           11111111000           1111111     1113344


Q ss_pred             HHHHHHHcc----CceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecCC
Q 046889          248 SLLCKRIEK----QRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRT  308 (333)
Q Consensus       248 ~~l~~~l~~----k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~~  308 (333)
                      ..+...+..    ++.++++|++....+.      ..........|+.+|++||+.+.... .+..+.+.+
T Consensus        86 ~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~-~d~~~~l~~  155 (162)
T cd03227          86 SALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL-ADKLIHIKK  155 (162)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh-hhhEEEEEE
Confidence            445555543    6789999999766432      22212211127889999999998764 344454443

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR01069 mutS2 MutS2 family protein

Probab=98.20  E-value=4.8e-06  Score=83.34  Aligned_cols=115  Identities=14%  Similarity=0.084  Sum_probs=58.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH-HHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ-AKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---LPDNDELVRASLLCKR  253 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~-~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~  253 (333)
                      ..++.|+||||.|||||++.+... ......+    ++....... ...+.++...++..+   ....+...-...+...
T Consensus       322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~----~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i  396 (771)
T TIGR01069       322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSGI----PIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI  396 (771)
T ss_pred             ceEEEEECCCCCCchHHHHHHHHHHHHHHhCC----CccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence            358999999999999999999876 2222221    111100000 000111111111100   0011111112223333


Q ss_pred             Hc--cCceEEEEeCCCCchh------h-hhccCCCCCCCcEEEEeeCChHHHh
Q 046889          254 IE--KQRVLVILDDLWVQIE------L-DRVGIPYGNDGCKFLLTSRSRAACN  297 (333)
Q Consensus       254 l~--~k~~LlVlDdv~~~~~------~-~~l~~~~~~~g~~vivTTr~~~v~~  297 (333)
                      +.  .++.|++||++.+..+      + ..+...+...|+.+|+|||..++..
T Consensus       397 l~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       397 LSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA  449 (771)
T ss_pred             HHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence            33  4789999999976533      1 1111122345889999999988743

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.20  E-value=2.6e-05  Score=76.03  Aligned_cols=164  Identities=13%  Similarity=0.173  Sum_probs=87.9

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+.....-.....   +    ..+..-...+.+.
T Consensus        11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~----~pCg~C~sCr~i~   83 (709)
T PRK08691         11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G----EPCGVCQSCTQID   83 (709)
T ss_pred             CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C----CCCcccHHHHHHh
Confidence            345567789999999999999987764 4679999999999999999987653211110   0    0000000011110


Q ss_pred             HH-----hCCCCCCCCCHHHHHHHHHH----HHccCceEEEEeCCCCchh--hhhcc--CCCCCCCcEEEEeeCChH-HH
Q 046889          231 GW-----LGIKELPDNDELVRASLLCK----RIEKQRVLVILDDLWVQIE--LDRVG--IPYGNDGCKFLLTSRSRA-AC  296 (333)
Q Consensus       231 ~~-----l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~--~~~l~--~~~~~~g~~vivTTr~~~-v~  296 (333)
                      ..     +.+........+.+...+..    -..+++.++|+||+.....  +..+.  +......+.+|++|.+.. +.
T Consensus        84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~  163 (709)
T PRK08691         84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP  163 (709)
T ss_pred             ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence            00     00000011112222111111    1224667999999875422  22221  111223567777776543 22


Q ss_pred             hhcccce--EecCCCCHHHHHHHHHhhc
Q 046889          297 NQMQAHI--VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       297 ~~~~~~~--~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..+..+.  +.+.+++.++....+.+.+
T Consensus       164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il  191 (709)
T PRK08691        164 VTVLSRCLQFVLRNMTAQQVADHLAHVL  191 (709)
T ss_pred             hHHHHHHhhhhcCCCCHHHHHHHHHHHH
Confidence            2222222  7888999988887776554

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.19  E-value=4.3e-05  Score=73.97  Aligned_cols=162  Identities=10%  Similarity=0.104  Sum_probs=87.6

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..++.|..++..++.. .+.+.|+.|+||||+|+.+.....-......       ..++.-...+.|.
T Consensus         8 RP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~   80 (584)
T PRK14952          8 RPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA-------TPCGVCESCVALA   80 (584)
T ss_pred             CCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC-------CcccccHHHHHhh
Confidence            3445667899999999999999887654 4789999999999999999876542111100       0000000111111


Q ss_pred             HH-------hCCCCCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCC-h
Q 046889          231 GW-------LGIKELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRS-R  293 (333)
Q Consensus       231 ~~-------l~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~-~  293 (333)
                      ..       +..........++.. .+.+.     ...+.-++|+|++...  ...+.+.  +......+.+|++|.+ .
T Consensus        81 ~~~~~~~dvieidaas~~gvd~iR-el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~  159 (584)
T PRK14952         81 PNGPGSIDVVELDAASHGGVDDTR-ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE  159 (584)
T ss_pred             cccCCCceEEEeccccccCHHHHH-HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence            00       000000111122211 11111     1246679999998644  2333331  2222335666655544 4


Q ss_pred             HHHhhccc--ceEecCCCCHHHHHHHHHhh
Q 046889          294 AACNQMQA--HIVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       294 ~v~~~~~~--~~~~l~~L~~~e~~~lf~~~  321 (333)
                      .+...+.+  ..+.+.+++.++..+.+.+.
T Consensus       160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i  189 (584)
T PRK14952        160 KVLPTIRSRTHHYPFRLLPPRTMRALIARI  189 (584)
T ss_pred             hhHHHHHHhceEEEeeCCCHHHHHHHHHHH
Confidence            44333333  33889999998887777654

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.18  E-value=4.5e-05  Score=74.39  Aligned_cols=169  Identities=12%  Similarity=0.157  Sum_probs=89.1

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE-eCCCCCHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV-VSQTPSITKIQDEIA  230 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~  230 (333)
                      |.....++|.+..++.|...+..++.. -+.++||.|+||||+|+.+.....-........|.. ....+..-...+.+.
T Consensus        12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~   91 (620)
T PRK14954         12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD   91 (620)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence            445567899999999999988877653 488999999999999999987764322111011110 001111111111111


Q ss_pred             HHhCC-----CCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCC-hHH
Q 046889          231 GWLGI-----KELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRS-RAA  295 (333)
Q Consensus       231 ~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~-~~v  295 (333)
                      ..-..     ........+++.. +.+.+     .+.+-++|+||+....  ..+.+.  +..+...+.+|++|.+ ..+
T Consensus        92 ~g~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL  170 (620)
T PRK14954         92 AGTSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI  170 (620)
T ss_pred             ccCCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence            10000     0001111233322 22222     3456689999986542  233331  2222234555555543 334


Q ss_pred             Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+..+  .+.+.+++.++....+.+.+
T Consensus       171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~  199 (620)
T PRK14954        171 PATIASRCQRFNFKRIPLDEIQSQLQMIC  199 (620)
T ss_pred             hHHHHhhceEEecCCCCHHHHHHHHHHHH
Confidence            3333333  38999999988877776543

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.18  E-value=2.7e-06  Score=72.65  Aligned_cols=114  Identities=17%  Similarity=0.128  Sum_probs=61.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH--hhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAK--EKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLC  251 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~--~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~  251 (333)
                      +..++.|+|++|.|||||++.+.-..-  .-+.|-+.--..+       .....++..++..+.   ...........+.
T Consensus        29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~-------~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a  101 (222)
T cd03285          29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADI-------PIVDCILARVGASDSQLKGVSTFMAEMLETA  101 (222)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEE-------eccceeEeeeccccchhcCcChHHHHHHHHH
Confidence            345899999999999999998764311  1111111110111       122333344443321   1122333344455


Q ss_pred             HHH--ccCceEEEEeCC---CCchhhhhcc----CCC-CCCCcEEEEeeCChHHHh
Q 046889          252 KRI--EKQRVLVILDDL---WVQIELDRVG----IPY-GNDGCKFLLTSRSRAACN  297 (333)
Q Consensus       252 ~~l--~~k~~LlVlDdv---~~~~~~~~l~----~~~-~~~g~~vivTTr~~~v~~  297 (333)
                      ..+  ..++-|++||++   .+..|-..+.    ..+ ...|+.+|++||..++..
T Consensus       102 ~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~  157 (222)
T cd03285         102 AILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTA  157 (222)
T ss_pred             HHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHH
Confidence            555  467899999999   5554421110    111 124788999999876654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.17  E-value=5.7e-05  Score=69.30  Aligned_cols=166  Identities=14%  Similarity=0.066  Sum_probs=94.4

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeE------EEEEeCCCCCHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEV------AMAVVSQTPSITK  224 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~------~wv~v~~~~~~~~  224 (333)
                      .|.....++|.+...+.|...+..++.. -+.++||.|+||+|||..+....--.......      .-..+....   .
T Consensus        14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~   90 (365)
T PRK07471         14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---P   90 (365)
T ss_pred             CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---h
Confidence            3444567899999999999999887654 58899999999999999887765321110000      000000000   1


Q ss_pred             HHHHHHHHhCCCC---------C------CCCCHHHHHHHHHHHHc-----cCceEEEEeCCCCc--hhhhhcc--CCCC
Q 046889          225 IQDEIAGWLGIKE---------L------PDNDELVRASLLCKRIE-----KQRVLVILDDLWVQ--IELDRVG--IPYG  280 (333)
Q Consensus       225 ~~~~i~~~l~~~~---------~------~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~l~--~~~~  280 (333)
                      ..+.+.. -..++         .      .....++ +..+.+.+.     +.+.++|+||+...  ...+.+.  +...
T Consensus        91 ~c~~i~~-~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep  168 (365)
T PRK07471         91 VARRIAA-GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP  168 (365)
T ss_pred             HHHHHHc-cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence            1111110 00000         0      0111222 333444443     35679999998644  2233331  2223


Q ss_pred             CCCcEEEEeeCChHHH-hhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          281 NDGCKFLLTSRSRAAC-NQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       281 ~~g~~vivTTr~~~v~-~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..++.+|++|++.... ..+.++  .+.+.+++.++...++.+..
T Consensus       169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~  213 (365)
T PRK07471        169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG  213 (365)
T ss_pred             CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence            3467788888887542 222322  39999999999999998764

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.17  E-value=1.8e-06  Score=86.31  Aligned_cols=141  Identities=13%  Similarity=0.170  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH-----
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI-----  222 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~-----  222 (333)
                      ...++++...+..|+  .++|+|++|+|||||++.+.+...+.+.   ++.            .....++|++..     
T Consensus       466 ~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI  543 (686)
T TIGR03797       466 PLILDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSI  543 (686)
T ss_pred             ccceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccH
Confidence            356778877777888  9999999999999999999877654321   010            112334443311     


Q ss_pred             -----------HHHHHHHHHHhCCC--------C--------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh
Q 046889          223 -----------TKIQDEIAGWLGIK--------E--------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR  274 (333)
Q Consensus       223 -----------~~~~~~i~~~l~~~--------~--------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~  274 (333)
                                 .+-+...++..+..        +        ....+ .+.++-.+.+.+-.++-+++||++.+..|-..
T Consensus       544 ~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t  623 (686)
T TIGR03797       544 FENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT  623 (686)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence                       11122333333321        0        01112 34456678888889999999999987644211


Q ss_pred             ---ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          275 ---VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       275 ---l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         +.-.....+..+|++||....... .++.+.|
T Consensus       624 e~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl  657 (686)
T TIGR03797       624 QAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVL  657 (686)
T ss_pred             HHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEE
Confidence               100111114678999998887654 3444433

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.17  E-value=2.1e-05  Score=66.40  Aligned_cols=58  Identities=12%  Similarity=0.198  Sum_probs=38.5

Q ss_pred             HHHHHHHccCceEEEEeCCCCchh-------hhhccCCCCCC-CcEEEEeeCChHHHhhcccceEec
Q 046889          248 SLLCKRIEKQRVLVILDDLWVQIE-------LDRVGIPYGND-GCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       248 ~~l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~-g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..+.+.+..++-+++||++.+..+       +..+....... |..||++||+.+.... ++..+.+
T Consensus       130 lala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~-~d~i~~l  195 (204)
T cd03240         130 LALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA-ADHIYRV  195 (204)
T ss_pred             HHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh-CCEEEEE
Confidence            356777888999999999986643       22332233333 6679999999987653 4444444

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.17  E-value=4.7e-05  Score=70.44  Aligned_cols=155  Identities=10%  Similarity=0.015  Sum_probs=84.6

Q ss_pred             ccccchHHHHHHHHHHhhcCC----------ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKDEK----------VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQ  226 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~  226 (333)
                      ..++|.+..++.|...+..+.          .+-+.++||.|+|||++|+.+.....-...-    +    ..+..-...
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~----~~Cg~C~~C   76 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----E----PGCGECRAC   76 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----C----CCCCCCHHH
Confidence            457899999999999887653          4568899999999999999987664321100    0    000000001


Q ss_pred             HHHHHHhCCC-------CCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEee
Q 046889          227 DEIAGWLGIK-------ELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTS  290 (333)
Q Consensus       227 ~~i~~~l~~~-------~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTT  290 (333)
                      +.+... ..+       .......++. ..+.+.+     .+++.++++|++...  ...+.+.  +..+..++.+|++|
T Consensus        77 ~~~~~~-~hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a  154 (394)
T PRK07940         77 RTVLAG-THPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA  154 (394)
T ss_pred             HHHhcC-CCCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence            111000 000       0001112222 1222222     235568999998754  2222221  22233466677777


Q ss_pred             CChHH-Hhhcccc--eEecCCCCHHHHHHHHHhh
Q 046889          291 RSRAA-CNQMQAH--IVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       291 r~~~v-~~~~~~~--~~~l~~L~~~e~~~lf~~~  321 (333)
                      .+..- ...+.++  .+.+.+++.++....+.+.
T Consensus       155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~  188 (394)
T PRK07940        155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR  188 (394)
T ss_pred             CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh
Confidence            77543 3233332  3899999999999888754

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.17  E-value=2.5e-05  Score=66.37  Aligned_cols=48  Identities=4%  Similarity=0.016  Sum_probs=31.7

Q ss_pred             CceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          257 QRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       257 k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      .+-+++||++.+..+      +..+.......+..||++||+.+....++...+
T Consensus       151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~  204 (213)
T cd03279         151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLE  204 (213)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEE
Confidence            456899999986643      222222223336789999999998877766553

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK05642 DNA replication initiation factor; Validated

Probab=98.16  E-value=6.7e-06  Score=70.90  Aligned_cols=118  Identities=19%  Similarity=0.325  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR  258 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~  258 (333)
                      ..+.|+|+.|+|||.|++.+++.....+  ..++|++..      ++...                  ...+.+.+.+- 
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~~------~~~~~------------------~~~~~~~~~~~-   98 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPLA------ELLDR------------------GPELLDNLEQY-   98 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeHH------HHHhh------------------hHHHHHhhhhC-
Confidence            4688999999999999999988764322  234454422      22110                  01233333332 


Q ss_pred             eEEEEeCCCCc---hhh----hhccCCCCCCCcEEEEeeCChHH---------Hhhcccce-EecCCCCHHHHHHHHHhh
Q 046889          259 VLVILDDLWVQ---IEL----DRVGIPYGNDGCKFLLTSRSRAA---------CNQMQAHI-VDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       259 ~LlVlDdv~~~---~~~----~~l~~~~~~~g~~vivTTr~~~v---------~~~~~~~~-~~l~~L~~~e~~~lf~~~  321 (333)
                      -+|++||+...   ..|    ..+.-.....|..+|+|++...-         ..++.... +.++++++++..++++++
T Consensus        99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k  178 (234)
T PRK05642         99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR  178 (234)
T ss_pred             CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence            37889999632   222    22222223347778888875432         22233333 889999999999999976


Q ss_pred             cc
Q 046889          322 RR  323 (333)
Q Consensus       322 a~  323 (333)
                      +.
T Consensus       179 a~  180 (234)
T PRK05642        179 AS  180 (234)
T ss_pred             HH
Confidence            54

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.16  E-value=2.7e-06  Score=83.20  Aligned_cols=139  Identities=17%  Similarity=0.227  Sum_probs=83.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-------  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-------  221 (333)
                      ..++++...+.+|+  .++|+|++|+|||||++.+.+...+...   ++.            .....++|++.       
T Consensus       354 ~il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~  431 (574)
T PRK11160        354 PVLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR  431 (574)
T ss_pred             cceecceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence            46778887777888  9999999999999999999877543321   000            01122333321       


Q ss_pred             ----------HHHHHHHHHHHhCCCCC---------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          222 ----------ITKIQDEIAGWLGIKEL---------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       222 ----------~~~~~~~i~~~l~~~~~---------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                                ..+-+.+.++..+..+.               ...+ .+.++-.+.+.+-.++-+++|||+.+..|-.  
T Consensus       432 ~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~  511 (574)
T PRK11160        432 DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE  511 (574)
T ss_pred             HHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence                      11223334444443211               1112 3445567888888899999999998764421  


Q ss_pred             ----hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          ...... ..+..+|++||....... .++.+.+
T Consensus       512 ~~i~~~l~~~-~~~~tviiitHr~~~~~~-~d~i~~l  546 (574)
T PRK11160        512 RQILELLAEH-AQNKTVLMITHRLTGLEQ-FDRICVM  546 (574)
T ss_pred             HHHHHHHHHH-cCCCEEEEEecChhHHHh-CCEEEEE
Confidence                111111 236778999998877654 4444444

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.16  E-value=1.2e-05  Score=62.74  Aligned_cols=88  Identities=20%  Similarity=0.129  Sum_probs=47.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC-
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ-  257 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-  257 (333)
                      ..+.|+|++|+||||+++.+........  ....++.............. ...... .............+.+..... 
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   78 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGG-KKASGSGELRLRLALALARKLK   78 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhc-cCCCCCHHHHHHHHHHHHHhcC
Confidence            3789999999999999999988765322  12333333322211111100 011111 122223333344455555544 


Q ss_pred             ceEEEEeCCCCch
Q 046889          258 RVLVILDDLWVQI  270 (333)
Q Consensus       258 ~~LlVlDdv~~~~  270 (333)
                      ..++++|++....
T Consensus        79 ~~viiiDei~~~~   91 (148)
T smart00382       79 PDVLILDEITSLL   91 (148)
T ss_pred             CCEEEEECCcccC
Confidence            4999999998663

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.16  E-value=3.5e-06  Score=70.77  Aligned_cols=112  Identities=10%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT-KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ  257 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k  257 (333)
                      ++|.|+||.|+||||+++.+......  .....++. +..+.... .-...+..+...    ..+.......++..+...
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t-~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~~   74 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILT-IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQD   74 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEE-EcCCccccccCccceeeeccc----CCCccCHHHHHHHHhcCC
Confidence            47999999999999999988776642  22223332 22211100 000011111000    111223455677888888


Q ss_pred             ceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhh
Q 046889          258 RVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQ  298 (333)
Q Consensus       258 ~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~  298 (333)
                      +-++++|++.+.+.+..... ....|..++.|+|..+....
T Consensus        75 pd~ii~gEird~e~~~~~l~-~a~~G~~v~~t~Ha~~~~~~  114 (198)
T cd01131          75 PDVILVGEMRDLETIRLALT-AAETGHLVMSTLHTNSAAKT  114 (198)
T ss_pred             cCEEEEcCCCCHHHHHHHHH-HHHcCCEEEEEecCCcHHHH
Confidence            89999999987765544322 22346779999998876543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.15  E-value=2.3e-05  Score=68.80  Aligned_cols=106  Identities=14%  Similarity=0.221  Sum_probs=76.8

Q ss_pred             HHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC----eEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 046889          164 STMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD----EVAMAVVSQTPSITKIQDEIAGWLGIK  236 (333)
Q Consensus       164 ~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~----~~~wv~v~~~~~~~~~~~~i~~~l~~~  236 (333)
                      ..++.|...+..   .+.+.+.|+|++|.|||++++.+.........-+    .++.+..+..++...+...|+..++.+
T Consensus        44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP  123 (302)
T PF05621_consen   44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP  123 (302)
T ss_pred             HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence            455556655543   3456799999999999999999997765432211    456677888899999999999999996


Q ss_pred             CCCCCCHHHHHHHHHHHHcc-CceEEEEeCCCCc
Q 046889          237 ELPDNDELVRASLLCKRIEK-QRVLVILDDLWVQ  269 (333)
Q Consensus       237 ~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~  269 (333)
                      -....+...........|.. +--+||+|++.+.
T Consensus       124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l  157 (302)
T PF05621_consen  124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL  157 (302)
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence            44555555555555566665 5569999999764

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.15  E-value=3e-05  Score=78.85  Aligned_cols=152  Identities=14%  Similarity=0.233  Sum_probs=87.5

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      ..+++||+++++.+...|......-+.++|++|+|||++++.+.........    -...+|..     +...++    .
T Consensus       178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~----a  248 (821)
T CHL00095        178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL----A  248 (821)
T ss_pred             CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh----c
Confidence            4678999999999999997654446779999999999999999887643211    12344421     111111    0


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHHc-cCceEEEEeCCCCch---------hhhhccCCCCCCC-cEEEEeeCChHHHh---
Q 046889          232 WLGIKELPDNDELVRASLLCKRIE-KQRVLVILDDLWVQI---------ELDRVGIPYGNDG-CKFLLTSRSRAACN---  297 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~---------~~~~l~~~~~~~g-~~vivTTr~~~v~~---  297 (333)
                        +. .. ....++....+.+.+. .++.+|++|++....         +...+..|.-..| -++|-+|...+...   
T Consensus       249 --g~-~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie  324 (821)
T CHL00095        249 --GT-KY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIE  324 (821)
T ss_pred             --cC-CC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHh
Confidence              11 11 1223333333333333 467899999985321         2223333433333 45566665544311   


Q ss_pred             ---hccc--ceEecCCCCHHHHHHHHHh
Q 046889          298 ---QMQA--HIVDVRTLTEEESWRSAEG  320 (333)
Q Consensus       298 ---~~~~--~~~~l~~L~~~e~~~lf~~  320 (333)
                         .+..  ..+.+...+.++...++..
T Consensus       325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~  352 (821)
T CHL00095        325 KDPALERRFQPVYVGEPSVEETIEILFG  352 (821)
T ss_pred             cCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence               1111  2277888888888887764

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.15  E-value=4.5e-06  Score=70.87  Aligned_cols=114  Identities=16%  Similarity=0.183  Sum_probs=57.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH--HhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHH--
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA--KEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLC--  251 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~--~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~--  251 (333)
                      +++.|+|+||+|||||++.+....  ...+.|.......++       ...++...++..+.   ...+...-...+.  
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~-------~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~  102 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIG-------LVDKIFTRMSSRESVSSGQSAFMIDLYQVSKA  102 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEe-------eeeeeeeeeCCccChhhccchHHHHHHHHHHH
Confidence            689999999999999999997432  111121111001110       11111112221100   0111111122222  


Q ss_pred             HHHccCceEEEEeCCCCchhh-------hhccCCCC---CCCcEEEEeeCChHHHhhc
Q 046889          252 KRIEKQRVLVILDDLWVQIEL-------DRVGIPYG---NDGCKFLLTSRSRAACNQM  299 (333)
Q Consensus       252 ~~l~~k~~LlVlDdv~~~~~~-------~~l~~~~~---~~g~~vivTTr~~~v~~~~  299 (333)
                      ..+..++.|++||++....+.       ..+...+.   ..+..+|++||+.+.+...
T Consensus       103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281         103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence            233468899999999765331       11111111   1245799999999987654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.15  E-value=2.4e-06  Score=83.80  Aligned_cols=140  Identities=14%  Similarity=0.158  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------  220 (333)
                      ...++.+...+..|+  .++|+|++|+|||||++.+.+...+...   ++.            .....++|++       
T Consensus       348 ~~~l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti  425 (585)
T TIGR01192       348 SQGVFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSI  425 (585)
T ss_pred             CccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccH
Confidence            345777777777777  9999999999999999999876543221   100            0112233332       


Q ss_pred             -----------CHHHHHH--------HHHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889          221 -----------SITKIQD--------EIAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD  273 (333)
Q Consensus       221 -----------~~~~~~~--------~i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~  273 (333)
                                 +.+++..        +.+..+  +..     .....+ .+..+-.+.+.|-.++-+++|||+.+..|-.
T Consensus       426 ~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~  505 (585)
T TIGR01192       426 RENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE  505 (585)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence                       1111111        111111  111     011122 3445567888899999999999998764421


Q ss_pred             ------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                            ...... ..+..||++||+.+.... +++.+.+
T Consensus       506 ~~~~i~~~l~~~-~~~~tvI~isH~~~~~~~-~d~i~~l  542 (585)
T TIGR01192       506 TEARVKNAIDAL-RKNRTTFIIAHRLSTVRN-ADLVLFL  542 (585)
T ss_pred             HHHHHHHHHHHH-hCCCEEEEEEcChHHHHc-CCEEEEE
Confidence                  211222 236779999999987754 4544444

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.13  E-value=8.2e-06  Score=81.96  Aligned_cols=138  Identities=17%  Similarity=0.174  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------  220 (333)
                      ...++++...+..|+  .++|+|++|+|||||++.+.+...+...   ++.            .....++|++       
T Consensus       487 ~~iL~~isl~i~~G~--~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI  564 (708)
T TIGR01193       487 SNILSDISLTIKMNS--KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI  564 (708)
T ss_pred             CcceeceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHH
Confidence            456777777777788  9999999999999999999876543221   000            0112333332       


Q ss_pred             ------------CHHHHHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889          221 ------------SITKIQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE  271 (333)
Q Consensus       221 ------------~~~~~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~  271 (333)
                                  +.+++ .+.++..+..                 ...-...+.++-.+.+.+-.++-+++||++.+..|
T Consensus       565 ~eNi~l~~~~~~~~~~i-~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD  643 (708)
T TIGR01193       565 LENLLLGAKENVSQDEI-WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD  643 (708)
T ss_pred             HHHHhccCCCCCCHHHH-HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence                        11222 2223322211                 11112234556678888889999999999987644


Q ss_pred             hh------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 LD------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ~~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      -.      ......  .+..+|++||....... .+..+.+
T Consensus       644 ~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~-~D~i~~l  681 (708)
T TIGR01193       644 TITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQ-SDKIIVL  681 (708)
T ss_pred             HHHHHHHHHHHHHh--cCCEEEEEecchHHHHc-CCEEEEE
Confidence            21      111111  36778999999887654 4444444

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.13  E-value=9.4e-05  Score=67.97  Aligned_cols=150  Identities=13%  Similarity=0.164  Sum_probs=85.9

Q ss_pred             ccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhc--------------------CCCeEEE
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKK--------------------MFDEVAM  213 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------------------~f~~~~w  213 (333)
                      ....++|.+..++.|..++..++. +.+.++||.|+||||+++.+........                    +++. .+
T Consensus        12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~   90 (355)
T TIGR02397        12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE   90 (355)
T ss_pred             cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence            445688999999999999987764 4678999999999999999987754211                    1111 11


Q ss_pred             EEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEe
Q 046889          214 AVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLT  289 (333)
Q Consensus       214 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivT  289 (333)
                      +.-...... +..+.+.+.+..                .-+.+++-++|+|++...  .....+.  +......+.+|++
T Consensus        91 ~~~~~~~~~-~~~~~l~~~~~~----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~  153 (355)
T TIGR02397        91 IDAASNNGV-DDIREILDNVKY----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA  153 (355)
T ss_pred             eeccccCCH-HHHHHHHHHHhc----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence            111100111 111122221111                001235568999988543  2233331  1222235667777


Q ss_pred             eCChH-HHhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          290 SRSRA-ACNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       290 Tr~~~-v~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      |.+.. +...+...  .+.+.++++++....+.+.+
T Consensus       154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~  189 (355)
T TIGR02397       154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKIL  189 (355)
T ss_pred             eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHH
Confidence            76654 22222222  38888999999888887654

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=3.8e-06  Score=76.24  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=44.0

Q ss_pred             HHHHHHccCceEEEEeCCCCchhhhhccCCCC-CC--CcEEEEeeCChHHHhhcccceEecC
Q 046889          249 LLCKRIEKQRVLVILDDLWVQIELDRVGIPYG-ND--GCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       249 ~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~-~~--g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .+.+.|--.+.||.||++.+..+++..+.... -+  .-..+|++|+..+...+|+.+|+|.
T Consensus       422 SLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD  483 (807)
T KOG0066|consen  422 SLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLD  483 (807)
T ss_pred             hHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhh
Confidence            45566666777999999999988887633211 11  3468999999999999888887765

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.13  E-value=5.4e-05  Score=69.95  Aligned_cols=152  Identities=13%  Similarity=0.241  Sum_probs=85.2

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhh------cCCCeEEEEEeCC--CCCHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEK------KMFDEVAMAVVSQ--TPSIT  223 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~------~~f~~~~wv~v~~--~~~~~  223 (333)
                      |.....++|.+...+.+...+..++. +.+.++||.|+||||+++.+.......      ..|...+ +.+..  .... 
T Consensus        13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~-   90 (367)
T PRK14970         13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAASNNSV-   90 (367)
T ss_pred             CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccccCCCH-
Confidence            44456788999999999999987764 478899999999999999997765421      1111111 11111  1111 


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-HHHhh
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR-AACNQ  298 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~-~v~~~  298 (333)
                      +..+.+++.+...                -..+++-++++||+...  ..+..+.  +......+.+|++|... .+...
T Consensus        91 ~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~  154 (367)
T PRK14970         91 DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT  154 (367)
T ss_pred             HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence            1112222221110                01235668999988643  2233331  11122245556555432 22222


Q ss_pred             ccc--ceEecCCCCHHHHHHHHHhhc
Q 046889          299 MQA--HIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       299 ~~~--~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      +..  ..++.+++++++....+.+.+
T Consensus       155 l~sr~~~v~~~~~~~~~l~~~l~~~~  180 (367)
T PRK14970        155 ILSRCQIFDFKRITIKDIKEHLAGIA  180 (367)
T ss_pred             HHhcceeEecCCccHHHHHHHHHHHH
Confidence            222  238899999988888777654

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.12  E-value=3.6e-05  Score=67.02  Aligned_cols=56  Identities=9%  Similarity=0.098  Sum_probs=35.1

Q ss_pred             HHHHHHHHcc----CceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          247 ASLLCKRIEK----QRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       247 ~~~l~~~l~~----k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      ...+...+..    .+-+++||++.+..+      +..+.......|..||++||+..+.. +++..
T Consensus       163 rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~-~~d~i  228 (247)
T cd03275         163 MAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFS-KADAL  228 (247)
T ss_pred             HHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHh-hCCeE
Confidence            3345555543    467999999987644      22332333334778999999988764 34444

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.12  E-value=4.5e-06  Score=81.76  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC--------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP--------  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~--------  220 (333)
                      ..++++...+..|+  .++|+|++|+|||||++.+.+...+...   ++.            ....+++|++        
T Consensus       346 ~il~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~  423 (571)
T TIGR02203       346 PALDSISLVIEPGE--TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA  423 (571)
T ss_pred             ccccCeeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence            35677777777788  9999999999999999999877654310   000            0112333332        


Q ss_pred             -----------CHHHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh-
Q 046889          221 -----------SITKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-  271 (333)
Q Consensus       221 -----------~~~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-  271 (333)
                                 +..+ +.+.++.++..                .....+ .+.++-.+.+.+-.++-+++||++.+..| 
T Consensus       424 ~Ni~~~~~~~~~~~~-i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~  502 (571)
T TIGR02203       424 NNIAYGRTEQADRAE-IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDN  502 (571)
T ss_pred             HHHhcCCCCCCCHHH-HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence                       1111 22233332221                001122 34456678888888999999999987644 


Q ss_pred             -----hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 -----LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 -----~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                           +....... ..+..+|++||+...... ++..+.+
T Consensus       503 ~~~~~i~~~L~~~-~~~~tiIiitH~~~~~~~-~D~ii~l  540 (571)
T TIGR02203       503 ESERLVQAALERL-MQGRTTLVIAHRLSTIEK-ADRIVVM  540 (571)
T ss_pred             HHHHHHHHHHHHH-hCCCEEEEEehhhHHHHh-CCEEEEE
Confidence                 22221221 236789999999987654 4544444

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.12  E-value=1.9e-05  Score=67.81  Aligned_cols=130  Identities=19%  Similarity=0.261  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCC---CeEEEE----------------EeCCCC------------------
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMF---DEVAMA----------------VVSQTP------------------  220 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f---~~~~wv----------------~v~~~~------------------  220 (333)
                      .++.+|+|++|+|||||.+.|.+-.+++..+   ....|+                +|.|+.                  
T Consensus        24 ~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~  103 (352)
T COG4148          24 RGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK  103 (352)
T ss_pred             CceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc
Confidence            4599999999999999999999887654321   111121                222221                  


Q ss_pred             CHHHHHHHHHHHhCCC------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhc--cCCC-----CCCCcEEE
Q 046889          221 SITKIQDEIAGWLGIK------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRV--GIPY-----GNDGCKFL  287 (333)
Q Consensus       221 ~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l--~~~~-----~~~g~~vi  287 (333)
                      ....-+..+...+|+.      +..-...+.+.-.|.+.|-.++-||++|++-...|...-  .+|+     ....--|+
T Consensus       104 ~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIl  183 (352)
T COG4148         104 SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPIL  183 (352)
T ss_pred             cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEE
Confidence            1123455666677664      222233456677899999999999999998765442211  1221     12245689


Q ss_pred             EeeCChHHHhhcccceEecC
Q 046889          288 LTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       288 vTTr~~~v~~~~~~~~~~l~  307 (333)
                      -+||+.+...++..+.+-|+
T Consensus       184 YVSHS~~Ev~RLAd~vV~le  203 (352)
T COG4148         184 YVSHSLDEVLRLADRVVVLE  203 (352)
T ss_pred             EEecCHHHHHhhhheEEEec
Confidence            99999988777777764443

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.12  E-value=3.8e-05  Score=73.94  Aligned_cols=162  Identities=12%  Similarity=0.162  Sum_probs=86.0

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      |.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+.....-.....       ..++..-.....+..
T Consensus        12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pcg~C~~C~~i~~   84 (527)
T PRK14969         12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT-------ATPCGVCSACLEIDS   84 (527)
T ss_pred             CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhc
Confidence            444567899999999999999877654 568999999999999999987763211100       000000000111100


Q ss_pred             H-----hCCCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChH-HH
Q 046889          232 W-----LGIKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRA-AC  296 (333)
Q Consensus       232 ~-----l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~-v~  296 (333)
                      .     +..........+... .+....     .+++.++|+|++....  ..+.+.  +......+.+|++|.+.. +.
T Consensus        85 ~~~~d~~ei~~~~~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil  163 (527)
T PRK14969         85 GRFVDLIEVDAASNTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP  163 (527)
T ss_pred             CCCCceeEeeccccCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence            0     000000011122221 122221     2456799999987542  233331  111223566666665543 22


Q ss_pred             hhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          297 NQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       297 ~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..+.++  .+++++++.++....+.+.+
T Consensus       164 ~tI~SRc~~~~f~~l~~~~i~~~L~~il  191 (527)
T PRK14969        164 VTVLSRCLQFNLKQMPPPLIVSHLQHIL  191 (527)
T ss_pred             hhHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            222222  28889998888877666543

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.12  E-value=4.5e-05  Score=77.84  Aligned_cols=152  Identities=13%  Similarity=0.193  Sum_probs=88.9

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCCHHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      ...+++||+.++..++..|.......+.++|++|+|||++++.+.........    ....+|..     +...++    
T Consensus       171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~----  241 (852)
T TIGR03346       171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI----  241 (852)
T ss_pred             CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh----
Confidence            45678999999999999887665556779999999999999999887643211    12233321     111111    


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHHHc--cCceEEEEeCCCCch---------hhhhccCCCCCCCc-EEEEeeCChHH---
Q 046889          231 GWLGIKELPDNDELVRASLLCKRIE--KQRVLVILDDLWVQI---------ELDRVGIPYGNDGC-KFLLTSRSRAA---  295 (333)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~~~~~g~-~vivTTr~~~v---  295 (333)
                      .  +. . .....+.....+...+.  .++.+|++|++....         +...+..|....|. .+|-+|...+.   
T Consensus       242 a--~~-~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~  317 (852)
T TIGR03346       242 A--GA-K-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKY  317 (852)
T ss_pred             h--cc-h-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHH
Confidence            0  00 0 11122333333443333  368999999987432         12233344444444 45555554432   


Q ss_pred             -------HhhcccceEecCCCCHHHHHHHHHhh
Q 046889          296 -------CNQMQAHIVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       296 -------~~~~~~~~~~l~~L~~~e~~~lf~~~  321 (333)
                             ..++  ..+.+...+.++...++...
T Consensus       318 ~~~d~al~rRf--~~i~v~~p~~~~~~~iL~~~  348 (852)
T TIGR03346       318 IEKDAALERRF--QPVFVDEPTVEDTISILRGL  348 (852)
T ss_pred             hhcCHHHHhcC--CEEEeCCCCHHHHHHHHHHH
Confidence                   2222  22778888999999988765

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.11  E-value=8.5e-06  Score=79.03  Aligned_cols=132  Identities=14%  Similarity=0.182  Sum_probs=79.5

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-------  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-------  221 (333)
                      ..++++...+.+|+  .++|+|++|+|||||++.+.+..++...   ++.            .....++|++.       
T Consensus       336 ~il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~  413 (529)
T TIGR02857       336 PALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA  413 (529)
T ss_pred             ccccceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence            46788887777888  9999999999999999999876554320   000            01223344321       


Q ss_pred             ----------HHHHHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889          222 ----------ITKIQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELD-  273 (333)
Q Consensus       222 ----------~~~~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-  273 (333)
                                .++-+...++..+..                 ...-...+.++-.+.+.+-.++-+++|||+.+..|-. 
T Consensus       414 ~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~  493 (529)
T TIGR02857       414 ENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET  493 (529)
T ss_pred             HHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence                      011222333333221                 0111123445667888888899999999998764421 


Q ss_pred             -----hccCCCCCCCcEEEEeeCChHHHhh
Q 046889          274 -----RVGIPYGNDGCKFLLTSRSRAACNQ  298 (333)
Q Consensus       274 -----~l~~~~~~~g~~vivTTr~~~v~~~  298 (333)
                           ...... ..+..+|++||+......
T Consensus       494 ~~~i~~~l~~~-~~~~t~i~itH~~~~~~~  522 (529)
T TIGR02857       494 EALVTEALRAL-AQGRTVLLVTHRLALAER  522 (529)
T ss_pred             HHHHHHHHHHh-cCCCEEEEEecCHHHHHh
Confidence                 111221 246789999999887643

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=3.3e-06  Score=79.48  Aligned_cols=132  Identities=14%  Similarity=0.174  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------C------CCeEEEEEeCCCCC-----
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------M------FDEVAMAVVSQTPS-----  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~------f~~~~wv~v~~~~~-----  221 (333)
                      ..+..+...+..++  .++|+|++|+|||||+..+.+...+..           .      +....|+  +|.+-     
T Consensus       335 ~~l~~l~~t~~~g~--~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v--~Q~p~lf~gT  410 (559)
T COG4988         335 PALSDLNLTIKAGQ--LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV--SQNPYLFAGT  410 (559)
T ss_pred             cccCCceeEecCCc--EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee--CCCCcccccc
Confidence            56777777777777  899999999999999999997765321           1      1234454  33321     


Q ss_pred             ------------HHHHHHHHHHHhCCCCC---------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889          222 ------------ITKIQDEIAGWLGIKEL---------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD  273 (333)
Q Consensus       222 ------------~~~~~~~i~~~l~~~~~---------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~  273 (333)
                                  -++-+.+.+++.++.+.               ...+ .+.++-.+.+.+-.++-++++|++....|.+
T Consensus       411 ireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~e  490 (559)
T COG4988         411 IRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE  490 (559)
T ss_pred             HHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHh
Confidence                        02222333333332210               1112 2345567888888899999999998775533


Q ss_pred             hc------cCCCCCCCcEEEEeeCChHHHhhcc
Q 046889          274 RV------GIPYGNDGCKFLLTSRSRAACNQMQ  300 (333)
Q Consensus       274 ~l------~~~~~~~g~~vivTTr~~~v~~~~~  300 (333)
                      .-      .... ..+..+|+.||....+..+.
T Consensus       491 tE~~i~~~l~~l-~~~ktvl~itHrl~~~~~~D  522 (559)
T COG4988         491 TEQIILQALQEL-AKQKTVLVITHRLEDAADAD  522 (559)
T ss_pred             HHHHHHHHHHHH-HhCCeEEEEEcChHHHhcCC
Confidence            32      1222 23577999999998876653

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.10  E-value=6.1e-05  Score=65.76  Aligned_cols=62  Identities=18%  Similarity=0.226  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHccC---ceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          245 VRASLLCKRIEKQ---RVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       245 ~~~~~l~~~l~~k---~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .....+...|..+   +-+++||++.+..+.      ..+...+...|..||++||+.++.. .++..+.+.
T Consensus       175 ~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lg  245 (261)
T cd03271         175 AQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLG  245 (261)
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEec
Confidence            3455566666664   589999999876432      2222222334778999999999875 355556664

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.10  E-value=3.5e-06  Score=89.88  Aligned_cols=130  Identities=15%  Similarity=0.232  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh---h-cC--CCe--------EEEEEeCCCC------CH-
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE---K-KM--FDE--------VAMAVVSQTP------SI-  222 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~-~~--f~~--------~~wv~v~~~~------~~-  222 (333)
                      ..++++...+.+++  +++|+|++|+|||||++.+.+....   . +.  ++.        ....++.|..      ++ 
T Consensus       777 ~iL~~vs~~i~~Ge--~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~  854 (1394)
T TIGR00956       777 VILNNVDGWVKPGT--LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR  854 (1394)
T ss_pred             EeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence            34555555555566  8999999999999999999887541   1 10  000        1112334321      11 


Q ss_pred             --------------------HHHHHHHHHHhCCCCCC---------CCC-HHHHHHHHHHHHccCc-eEEEEeCCCCchh
Q 046889          223 --------------------TKIQDEIAGWLGIKELP---------DND-ELVRASLLCKRIEKQR-VLVILDDLWVQIE  271 (333)
Q Consensus       223 --------------------~~~~~~i~~~l~~~~~~---------~~~-~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~  271 (333)
                                          .+...++++.+++.+..         ..+ .+..+-.|...|..++ .+|+||++.+..|
T Consensus       855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD  934 (1394)
T TIGR00956       855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD  934 (1394)
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCC
Confidence                                11234556666654211         122 2344556777777778 5999999987754


Q ss_pred             h------hhccCCCCCCCcEEEEeeCChHH
Q 046889          272 L------DRVGIPYGNDGCKFLLTSRSRAA  295 (333)
Q Consensus       272 ~------~~l~~~~~~~g~~vivTTr~~~v  295 (333)
                      -      ..+.......|..||+|||+...
T Consensus       935 ~~~~~~i~~~L~~la~~g~tvI~t~H~~~~  964 (1394)
T TIGR00956       935 SQTAWSICKLMRKLADHGQAILCTIHQPSA  964 (1394)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence            2      22212222347889999999864

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=0.00081  Score=65.09  Aligned_cols=155  Identities=19%  Similarity=0.197  Sum_probs=85.1

Q ss_pred             cccccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKD------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI  229 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  229 (333)
                      ..+.||-+++.++|++.|.-      -.-++++++||+|+|||+|++.|.....  ..|-..   ++..-.+..++-   
T Consensus       322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--RkfvR~---sLGGvrDEAEIR---  393 (782)
T COG0466         322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKFVRI---SLGGVRDEAEIR---  393 (782)
T ss_pred             cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCEEEE---ecCccccHHHhc---
Confidence            34678999999999988841      1235999999999999999999998875  333222   222222222211   


Q ss_pred             HHHhCCCCCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCc------------------hh---hhhc--cCCCCCCCcE
Q 046889          230 AGWLGIKELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQ------------------IE---LDRV--GIPYGNDGCK  285 (333)
Q Consensus       230 ~~~l~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~------------------~~---~~~l--~~~~~~~g~~  285 (333)
                          |.+...-.. +......+.+. +.++-+++||++...                  ++   +.+-  ..|+.-....
T Consensus       394 ----GHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm  468 (782)
T COG0466         394 ----GHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM  468 (782)
T ss_pred             ----cccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence                111111111 12223333332 457789999987521                  00   1111  1222222333


Q ss_pred             EEEeeCChH-HHhh-cccc-eEecCCCCHHHHHHHHHhhcc
Q 046889          286 FLLTSRSRA-ACNQ-MQAH-IVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       286 vivTTr~~~-v~~~-~~~~-~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      +|.|..+.+ +... +.-+ .|++.+-+++|=.+.-+++..
T Consensus       469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li  509 (782)
T COG0466         469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI  509 (782)
T ss_pred             EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence            444444433 2111 2222 289999999988887776653

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=9.9e-05  Score=71.32  Aligned_cols=160  Identities=12%  Similarity=0.164  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe----EEEEEeCCCC--------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE----VAMAVVSQTP--------  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~----~~wv~v~~~~--------  220 (333)
                      ..++++...+.+|+  ++++|||+|.||||++..+.+-..+..           .+++    .....|+|.+        
T Consensus       482 ~Vlk~lsfti~pGe--~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~  559 (716)
T KOG0058|consen  482 PVLKNLSFTIRPGE--VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR  559 (716)
T ss_pred             hhhcCceeeeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence            48999999999999  999999999999999999876654432           1111    1223455544        


Q ss_pred             ----------CHHHHHH--------HHHHHhCCC--------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhh
Q 046889          221 ----------SITKIQD--------EIAGWLGIK--------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDR  274 (333)
Q Consensus       221 ----------~~~~~~~--------~i~~~l~~~--------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~  274 (333)
                                +.+++..        +++..+...        +..-..-+.++..|.+.|-.++.+||||+..+..|-+.
T Consensus       560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeS  639 (716)
T KOG0058|consen  560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAES  639 (716)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhh
Confidence                      2222221        112222111        00111235567789999999999999999987754222


Q ss_pred             ------ccCCCCCCCcEEEEeeCChHHHhhcccce--------EecC----CCCHH--HHHHHHHhhcccCCC
Q 046889          275 ------VGIPYGNDGCKFLLTSRSRAACNQMQAHI--------VDVR----TLTEE--ESWRSAEGKRRVCLE  327 (333)
Q Consensus       275 ------l~~~~~~~g~~vivTTr~~~v~~~~~~~~--------~~l~----~L~~~--e~~~lf~~~a~~~~~  327 (333)
                            ..-.... +-.||++.|--...+... .+        .++.    .++..  -.++|.++..+....
T Consensus       640 E~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad-~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~~~  710 (716)
T KOG0058|consen  640 EYLVQEALDRLMQ-GRTVLVIAHRLSTVRHAD-QIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSGEP  710 (716)
T ss_pred             HHHHHHHHHHhhc-CCeEEEEehhhhHhhhcc-EEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcccCCC
Confidence                  1111122 345777777655433221 11        2221    12222  477777777765544

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.08  E-value=8.9e-06  Score=63.89  Aligned_cols=92  Identities=22%  Similarity=0.314  Sum_probs=56.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC------------eEEEEEeCCCCC-----------HHHHHHH
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD------------EVAMAVVSQTPS-----------ITKIQDE  228 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~------------~~~wv~v~~~~~-----------~~~~~~~  228 (333)
                      .++  +++|+|++|+|||||++.+.+.......   ++            .....++++...           .......
T Consensus        10 ~g~--~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~   87 (137)
T PF00005_consen   10 PGE--IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEE   87 (137)
T ss_dssp             TTS--EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHH
T ss_pred             CCC--EEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            455  8999999999999999999877653210   00            000112333311           1224556


Q ss_pred             HHHHhCCCC-----C----CCCC-HHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          229 IAGWLGIKE-----L----PDND-ELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       229 i~~~l~~~~-----~----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                      +++.++...     .    ...+ .+...-.+...+..++-+++|||+.+
T Consensus        88 ~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   88 VLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            666666432     1    1222 34556678888889999999999863

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.07  E-value=3.9e-06  Score=82.05  Aligned_cols=138  Identities=20%  Similarity=0.330  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC--------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP--------  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~--------  220 (333)
                      ..++.+...+..|+  .++|+|++|+|||||++.+.+...+...   ++.            .....++|.+        
T Consensus       329 ~~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~  406 (569)
T PRK10789        329 PALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA  406 (569)
T ss_pred             ccccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence            46777777777788  9999999999999999999876543221   000            0112233322        


Q ss_pred             ----------CHHHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889          221 ----------SITKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD  273 (333)
Q Consensus       221 ----------~~~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~  273 (333)
                                +... +...++..+..                .....+ .+..+-.+.+.+-.++-+++||++.+..|-.
T Consensus       407 ~Ni~~~~~~~~~~~-~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~  485 (569)
T PRK10789        407 NNIALGRPDATQQE-IEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGR  485 (569)
T ss_pred             HHHhcCCCCCCHHH-HHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHH
Confidence                      1111 22222222211                001112 3445567888899999999999998764421


Q ss_pred             ------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                            ...... ..+..+|++||+...... .++.+.+
T Consensus       486 ~~~~i~~~l~~~-~~~~tii~itH~~~~~~~-~d~i~~l  522 (569)
T PRK10789        486 TEHQILHNLRQW-GEGRTVIISAHRLSALTE-ASEILVM  522 (569)
T ss_pred             HHHHHHHHHHHH-hCCCEEEEEecchhHHHc-CCEEEEE
Confidence                  111111 236779999999877654 3444444

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.07  E-value=3.3e-05  Score=74.40  Aligned_cols=163  Identities=12%  Similarity=0.081  Sum_probs=87.8

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|++..++.|...+..++. +.+.++||.|+||||+|+.+.....-..      |.... .+..-..++.+.
T Consensus        11 RP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~   83 (605)
T PRK05896         11 RPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN   83 (605)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence            344556789999999999999877654 4688999999999999999987763211      11110 111111111111


Q ss_pred             HHhCCC-----CCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-HH
Q 046889          231 GWLGIK-----ELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR-AA  295 (333)
Q Consensus       231 ~~l~~~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~-~v  295 (333)
                      ......     .......++.. .+...     ...++-++|+|++...  ..+..+.  +..+...+.+|++|... .+
T Consensus        84 ~~~h~DiieIdaas~igVd~IR-eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL  162 (605)
T PRK05896         84 TNQSVDIVELDAASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI  162 (605)
T ss_pred             cCCCCceEEeccccccCHHHHH-HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence            111000     00011122211 11111     1234558999998653  2333331  11122355566555443 33


Q ss_pred             Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+..+  .+.+.++++++....+.+.+
T Consensus       163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il  191 (605)
T PRK05896        163 PLTIISRCQRYNFKKLNNSELQELLKSIA  191 (605)
T ss_pred             hHHHHhhhhhcccCCCCHHHHHHHHHHHH
Confidence            2223322  38999999999888777644

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.06  E-value=6.2e-05  Score=69.93  Aligned_cols=146  Identities=17%  Similarity=0.239  Sum_probs=84.0

Q ss_pred             ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          157 YNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ..+.|++..++.+...+..             ...+-|.++||+|+|||+||+.+++...  ..     |+.+..    .
T Consensus       131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~----~  199 (389)
T PRK03992        131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG----S  199 (389)
T ss_pred             HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh----H
Confidence            4577889888888776531             2345689999999999999999988754  12     232221    1


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH-ccCceEEEEeCCCCch------------h----hhhcc---CCC-CCC
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRI-EKQRVLVILDDLWVQI------------E----LDRVG---IPY-GND  282 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~---~~~-~~~  282 (333)
                      .+...   ..+       ........+.+.. ...+.+|+|||+....            .    +..+.   -.+ ...
T Consensus       200 ~l~~~---~~g-------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~  269 (389)
T PRK03992        200 ELVQK---FIG-------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG  269 (389)
T ss_pred             HHhHh---hcc-------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence            11111   011       1111222222222 3467899999986421            1    11121   111 122


Q ss_pred             CcEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhcc
Q 046889          283 GCKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       283 g~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      +..||.||...+....  ..    ...+.+++.+.++..++|+.+..
T Consensus       270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~  316 (389)
T PRK03992        270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR  316 (389)
T ss_pred             CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence            5567878876554221  11    22388999999999999987754

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.05  E-value=7.2e-05  Score=76.16  Aligned_cols=49  Identities=14%  Similarity=0.312  Sum_probs=42.2

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ...+++||+.++..++..|.......+.++|++|+|||+|++.+.....
T Consensus       176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~  224 (857)
T PRK10865        176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII  224 (857)
T ss_pred             CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence            4567999999999999988766555678999999999999999988764

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.05  E-value=4.4e-05  Score=71.88  Aligned_cols=127  Identities=15%  Similarity=0.147  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR  258 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~  258 (333)
                      .-+.|+|+.|+|||+|++.+.+..... . ...+++.      ...+...+...+...     .    ...+...+ ...
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~-~-~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~-~~~  203 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRES-G-GKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFY-RNV  203 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHc-C-CCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHc-ccC
Confidence            457899999999999999999887532 1 2233332      233444444444321     1    12233333 345


Q ss_pred             eEEEEeCCCCch-------hhhhccCCCCCCCcEEEEeeCCh-H--------HHhhcccce-EecCCCCHHHHHHHHHhh
Q 046889          259 VLVILDDLWVQI-------ELDRVGIPYGNDGCKFLLTSRSR-A--------ACNQMQAHI-VDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       259 ~LlVlDdv~~~~-------~~~~l~~~~~~~g~~vivTTr~~-~--------v~~~~~~~~-~~l~~L~~~e~~~lf~~~  321 (333)
                      .+|++||+....       .+..+.-.....|..||+||... .        +..++.... +.+.+++.++...++.++
T Consensus       204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k  283 (445)
T PRK12422        204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK  283 (445)
T ss_pred             CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence            689999985431       11222111122366788888653 1        122333333 889999999999999887


Q ss_pred             cc
Q 046889          322 RR  323 (333)
Q Consensus       322 a~  323 (333)
                      +-
T Consensus       284 ~~  285 (445)
T PRK12422        284 AE  285 (445)
T ss_pred             HH
Confidence            63

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.05  E-value=3.8e-05  Score=61.83  Aligned_cols=112  Identities=19%  Similarity=0.152  Sum_probs=59.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH--HHHhCCC-------CC-CCCCHHHHH-H
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI--AGWLGIK-------EL-PDNDELVRA-S  248 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i--~~~l~~~-------~~-~~~~~~~~~-~  248 (333)
                      ++.|+|++|+||||++..+......  .-..+.|+........  .....  .......       .. ......... .
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIEE--LTERLIGESLKGALDNLIIVFATADDPAAARLLSK   76 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchHH--HHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHH
Confidence            3689999999999999999887753  2345556665544332  11110  1110000       11 111122211 1


Q ss_pred             HHHHHHccCceEEEEeCCCCc----------------hhhhhccCCCCCCCcEEEEeeCChHH
Q 046889          249 LLCKRIEKQRVLVILDDLWVQ----------------IELDRVGIPYGNDGCKFLLTSRSRAA  295 (333)
Q Consensus       249 ~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~g~~vivTTr~~~v  295 (333)
                      ........+.-++|+|++...                ..+..+..-....+..+|+|+|....
T Consensus        77 ~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~  139 (165)
T cd01120          77 AERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG  139 (165)
T ss_pred             HHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence            223334456779999998632                11222222223348889999997654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.05  E-value=5.9e-05  Score=66.96  Aligned_cols=127  Identities=15%  Similarity=0.173  Sum_probs=68.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRV  259 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~  259 (333)
                      -+.++|++|+||||+|+.+.......+......++.++.    .++...   .++.      +.......+.+   ....
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~---~~g~------~~~~~~~~~~~---a~~g  123 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQ---YIGH------TAPKTKEILKR---AMGG  123 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHh---hccc------chHHHHHHHHH---ccCc
Confidence            588999999999999998887664333222223444442    122111   1121      11111111222   1346


Q ss_pred             EEEEeCCCCc-----------hhhhhcc--CCCCCCCcEEEEeeCChHHHhh--cc-------cceEecCCCCHHHHHHH
Q 046889          260 LVILDDLWVQ-----------IELDRVG--IPYGNDGCKFLLTSRSRAACNQ--MQ-------AHIVDVRTLTEEESWRS  317 (333)
Q Consensus       260 LlVlDdv~~~-----------~~~~~l~--~~~~~~g~~vivTTr~~~v~~~--~~-------~~~~~l~~L~~~e~~~l  317 (333)
                      +|+|||+...           .....+.  +.....+.+||+++.....-..  ..       ...+.+++++.+|...+
T Consensus       124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I  203 (284)
T TIGR02880       124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI  203 (284)
T ss_pred             EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence            9999998632           1112221  1112235566777654322111  11       23489999999999999


Q ss_pred             HHhhc
Q 046889          318 AEGKR  322 (333)
Q Consensus       318 f~~~a  322 (333)
                      +.+.+
T Consensus       204 ~~~~l  208 (284)
T TIGR02880       204 AGLML  208 (284)
T ss_pred             HHHHH
Confidence            88775

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.04  E-value=3.1e-06  Score=84.79  Aligned_cols=139  Identities=17%  Similarity=0.216  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC-------
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP-------  220 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~-------  220 (333)
                      ...++++...+..|+  .++|+|++|+|||||++.+.+...+...   ++.            .....++|++       
T Consensus       478 ~~vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI  555 (694)
T TIGR03375       478 TPALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTL  555 (694)
T ss_pred             ccceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhH
Confidence            346777887777888  9999999999999999999876544221   000            0122344432       


Q ss_pred             -----------CHHHHHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 -----------SITKIQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 -----------~~~~~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                                 +.+++ .+.++..+..                 ...-...+.++-.+.+.+-.++-+++||++.+..|-
T Consensus       556 ~eNi~~~~~~~~~~~i-~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~  634 (694)
T TIGR03375       556 RDNIALGAPYADDEEI-LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN  634 (694)
T ss_pred             HHHHhCCCCCCCHHHH-HHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence                       11222 2222222211                 011112344566788888889999999999877442


Q ss_pred             h------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 D------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .      ...... ..++.+|++||....... +++.+.|
T Consensus       635 ~te~~i~~~l~~~-~~~~T~iiItHrl~~~~~-~D~iivl  672 (694)
T TIGR03375       635 RSEERFKDRLKRW-LAGKTLVLVTHRTSLLDL-VDRIIVM  672 (694)
T ss_pred             HHHHHHHHHHHHH-hCCCEEEEEecCHHHHHh-CCEEEEE
Confidence            2      111111 236789999999987654 3444444

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=3.5e-05  Score=71.95  Aligned_cols=139  Identities=14%  Similarity=0.204  Sum_probs=84.4

Q ss_pred             ccchH-HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCC------eEEEEEeC---
Q 046889          159 FKSRE-STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFD------EVAMAVVS---  217 (333)
Q Consensus       159 ~~gr~-~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~------~~~wv~v~---  217 (333)
                      +-|.+ ..++++...+.+|+  -|+|+|++|+|||||++.+.+...+++           +.+      ...|+.-+   
T Consensus       346 y~~~~~~~L~~~~l~l~~GE--kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl  423 (573)
T COG4987         346 YPGQQTKALKNFNLTLAQGE--KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL  423 (573)
T ss_pred             cCCCccchhhccceeecCCC--eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH
Confidence            44544 68889998888888  899999999999999999997554332           111      11121111   


Q ss_pred             -------------CCCCHHHHHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCC
Q 046889          218 -------------QTPSITKIQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLW  267 (333)
Q Consensus       218 -------------~~~~~~~~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~  267 (333)
                                   ++.+ .+-+..++++.++.                 +..-+..+..+-.+.+.|-...-+++||++.
T Consensus       424 F~~Tlr~NL~lA~~~As-DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPT  502 (573)
T COG4987         424 FSGTLRDNLRLANPDAS-DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPT  502 (573)
T ss_pred             HHHHHHHHHhhcCCCCC-HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCc
Confidence                         0111 12233445554432                 1111223445566777777788899999987


Q ss_pred             Cch------hhhhccCCCCCCCcEEEEeeCChHHHhhccc
Q 046889          268 VQI------ELDRVGIPYGNDGCKFLLTSRSRAACNQMQA  301 (333)
Q Consensus       268 ~~~------~~~~l~~~~~~~g~~vivTTr~~~v~~~~~~  301 (333)
                      ...      ++-.+.+.. -.|..+|++||...-.+.|..
T Consensus       503 egLD~~TE~~vL~ll~~~-~~~kTll~vTHrL~~le~~dr  541 (573)
T COG4987         503 EGLDPITERQVLALLFEH-AEGKTLLMVTHRLRGLERMDR  541 (573)
T ss_pred             ccCChhhHHHHHHHHHHH-hcCCeEEEEecccccHhhcCE
Confidence            553      333332322 226679999998877666544

>PRK06620 hypothetical protein; Validated

Probab=98.03  E-value=1.6e-05  Score=67.55  Aligned_cols=107  Identities=15%  Similarity=0.021  Sum_probs=64.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR  258 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~  258 (333)
                      ..+.|+||.|+|||+|++.+.+...  .     .++  +....             .        .       +.+ ...
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~--~~~~~-------------~--------~-------~~~-~~~   86 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YII--KDIFF-------------N--------E-------EIL-EKY   86 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC--C-----EEc--chhhh-------------c--------h-------hHH-hcC
Confidence            4689999999999999998766542  1     111  10000             0        0       011 233


Q ss_pred             eEEEEeCCCCch--hhhhccCCCCCCCcEEEEeeCChHH-------Hhhcccc-eEecCCCCHHHHHHHHHhhcc
Q 046889          259 VLVILDDLWVQI--ELDRVGIPYGNDGCKFLLTSRSRAA-------CNQMQAH-IVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       259 ~LlVlDdv~~~~--~~~~l~~~~~~~g~~vivTTr~~~v-------~~~~~~~-~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      .+|++||+....  .+..+.-.....|..+|+|++....       ..++... .+.++++++++-..++++.+-
T Consensus        87 d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~  161 (214)
T PRK06620         87 NAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS  161 (214)
T ss_pred             CEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence            578999996432  2222212223457788888875432       3334444 389999999998888877653

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.03  E-value=8e-05  Score=72.13  Aligned_cols=163  Identities=11%  Similarity=0.094  Sum_probs=89.1

Q ss_pred             cccccccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEK-VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|.....++|.+..+..|...+..++ ...+.++|+.|+||||+|+.+.....-......       ..++.-...+.|.
T Consensus        11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~   83 (624)
T PRK14959         11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT   83 (624)
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence            34445678899999999999888766 467889999999999999999877642110000       0011111111111


Q ss_pred             HHhCCC-----CCCCCCHHHHHHHHHHH-----HccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-HH
Q 046889          231 GWLGIK-----ELPDNDELVRASLLCKR-----IEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR-AA  295 (333)
Q Consensus       231 ~~l~~~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~-~v  295 (333)
                      .....+     .......+.. ..+.+.     ..+++.++|+|++...  ..++.+.  +......+.+|++|.+. .+
T Consensus        84 ~g~hpDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl  162 (624)
T PRK14959         84 QGMHVDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF  162 (624)
T ss_pred             cCCCCceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence            110000     0001112211 112222     2346679999998654  2233331  11122355666666553 34


Q ss_pred             Hhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+..+  .+++.+++.++....+.+.+
T Consensus       163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il  191 (624)
T PRK14959        163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVL  191 (624)
T ss_pred             hHHHHhhhhccccCCCCHHHHHHHHHHHH
Confidence            3333322  38999999999988887644

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.03  E-value=8.3e-05  Score=72.38  Aligned_cols=166  Identities=10%  Similarity=0.120  Sum_probs=90.7

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhhcCCC--eEEEEEeCCCCCHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEKKMFD--EVAMAVVSQTPSITKIQDE  228 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~~  228 (333)
                      .|.....++|.+..++.|...+..++.. -+.++|+.|+||||+|+.+.....-.....  ...+    ..+..-...+.
T Consensus        19 RP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~   94 (598)
T PRK09111         19 RPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA   94 (598)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence            3445667899999999999999887644 688999999999999999987754211100  0000    00010111122


Q ss_pred             HHHHhCCC-----CCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-
Q 046889          229 IAGWLGIK-----ELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR-  293 (333)
Q Consensus       229 i~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~-  293 (333)
                      |......+     .......++.. .+.+.+     ..++-++|+|++...  ...+.+.  +.....++.+|++|... 
T Consensus        95 i~~g~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~  173 (598)
T PRK09111         95 IMEGRHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR  173 (598)
T ss_pred             HhcCCCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence            22111110     00111222222 222222     235668999998644  2233331  22223366676666443 


Q ss_pred             HHHhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          294 AACNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       294 ~v~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      .+...+.++  .+.+.++++++....+.+.+
T Consensus       174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~  204 (598)
T PRK09111        174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIA  204 (598)
T ss_pred             hhhHHHHhheeEEEecCCCHHHHHHHHHHHH
Confidence            333233333  38899999988888777654

>PLN03140 ABC transporter G family member; Provisional

Probab=98.03  E-value=5.3e-06  Score=88.50  Aligned_cols=156  Identities=12%  Similarity=0.158  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh---hcC--CC---------eEEEEEeCCCC------CHH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE---KKM--FD---------EVAMAVVSQTP------SIT  223 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~~--f~---------~~~wv~v~~~~------~~~  223 (333)
                      ..++++...+.+|+  +++|+|++|+|||||++.+.+....   .+.  +.         .....++.|..      ++.
T Consensus       894 ~iL~~vs~~i~~Ge--l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~  971 (1470)
T PLN03140        894 QLLREVTGAFRPGV--LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR  971 (1470)
T ss_pred             eEeeCcEEEEECCe--EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence            45555555555666  9999999999999999999876431   110  00         01112233321      110


Q ss_pred             ---------------------HHHHHHHHHhCCCCC----------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889          224 ---------------------KIQDEIAGWLGIKEL----------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE  271 (333)
Q Consensus       224 ---------------------~~~~~i~~~l~~~~~----------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~  271 (333)
                                           ....++++.+++...          ...+ .+..+-.|...|..++-+|+||++.+..|
T Consensus       972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140        972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence                                 113345666665411          1122 33445668888888999999999987754


Q ss_pred             hh------hccCCCCCCCcEEEEeeCChHH-HhhcccceEec---------CCCC--HHHHHHHHHhh
Q 046889          272 LD------RVGIPYGNDGCKFLLTSRSRAA-CNQMQAHIVDV---------RTLT--EEESWRSAEGK  321 (333)
Q Consensus       272 ~~------~l~~~~~~~g~~vivTTr~~~v-~~~~~~~~~~l---------~~L~--~~e~~~lf~~~  321 (333)
                      -.      .+.......|..||+|||+... .....++.+.|         .+..  ..+..++|.+.
T Consensus      1052 ~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~ 1119 (1470)
T PLN03140       1052 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAI 1119 (1470)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhc
Confidence            21      2212223347789999999863 22333333323         2222  35788888875

>CHL00181 cbbX CbbX; Provisional

Probab=98.03  E-value=0.00017  Score=64.02  Aligned_cols=126  Identities=15%  Similarity=0.195  Sum_probs=68.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRV  259 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~  259 (333)
                      .+.++|++|+||||+|+.++......+.-....|+.++.    .++...   ..+.      ........+.+   ...-
T Consensus        61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~---~~g~------~~~~~~~~l~~---a~gg  124 (287)
T CHL00181         61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQ---YIGH------TAPKTKEVLKK---AMGG  124 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHH---Hhcc------chHHHHHHHHH---ccCC
Confidence            478899999999999999988754322222222444442    222211   1121      11111111222   1335


Q ss_pred             EEEEeCCCCc-----------hhhhhcc--CCCCCCCcEEEEeeCChHH----------HhhcccceEecCCCCHHHHHH
Q 046889          260 LVILDDLWVQ-----------IELDRVG--IPYGNDGCKFLLTSRSRAA----------CNQMQAHIVDVRTLTEEESWR  316 (333)
Q Consensus       260 LlVlDdv~~~-----------~~~~~l~--~~~~~~g~~vivTTr~~~v----------~~~~~~~~~~l~~L~~~e~~~  316 (333)
                      +|++|++...           .....+.  +.....+..||+++....+          ..++ ...+.+++++.+|..+
T Consensus       125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~-~~~i~F~~~t~~el~~  203 (287)
T CHL00181        125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRI-ANHVDFPDYTPEELLQ  203 (287)
T ss_pred             EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhC-CceEEcCCcCHHHHHH
Confidence            9999998642           1112221  1112235667777764332          2222 2348899999999999


Q ss_pred             HHHhhc
Q 046889          317 SAEGKR  322 (333)
Q Consensus       317 lf~~~a  322 (333)
                      ++.+.+
T Consensus       204 I~~~~l  209 (287)
T CHL00181        204 IAKIML  209 (287)
T ss_pred             HHHHHH
Confidence            888775

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.03  E-value=6.9e-06  Score=80.55  Aligned_cols=139  Identities=16%  Similarity=0.195  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-------  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-------  221 (333)
                      ..++++...+.+|+  .++|+|++|+|||||++.+.+...+...   ++.            ....+++|++.       
T Consensus       354 ~iL~~inl~i~~Ge--~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~  431 (576)
T TIGR02204       354 PALDGLNLTVRPGE--TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVM  431 (576)
T ss_pred             ccccceeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHH
Confidence            46777777777788  9999999999999999999987654321   110            01223333321       


Q ss_pred             ----------HHHHHHHHHHHhCC-----------C-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889          222 ----------ITKIQDEIAGWLGI-----------K-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-  273 (333)
Q Consensus       222 ----------~~~~~~~i~~~l~~-----------~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-  273 (333)
                                ..+-+...++..+.           .     .....+ .+.++-.+.+.+-.++-+++|||+.+..|-. 
T Consensus       432 ~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~  511 (576)
T TIGR02204       432 ENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES  511 (576)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence                      01112222232221           1     001122 3445567888888889999999998764321 


Q ss_pred             -----hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 -----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 -----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                           ...... ..+..+|++||+...... .++.+.+
T Consensus       512 ~~~i~~~l~~~-~~~~t~IiitH~~~~~~~-~d~vi~l  547 (576)
T TIGR02204       512 EQLVQQALETL-MKGRTTLIIAHRLATVLK-ADRIVVM  547 (576)
T ss_pred             HHHHHHHHHHH-hCCCEEEEEecchHHHHh-CCEEEEE
Confidence                 111111 236789999999887654 3444444

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.02  E-value=0.00019  Score=59.71  Aligned_cols=136  Identities=16%  Similarity=0.165  Sum_probs=73.1

Q ss_pred             HHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhc--------------------CCCeEEEEEeC-CCCCHHHH
Q 046889          168 DIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKK--------------------MFDEVAMAVVS-QTPSITKI  225 (333)
Q Consensus       168 ~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------------------~f~~~~wv~v~-~~~~~~~~  225 (333)
                      .|...+..++. +.+.+.|+.|+||||+++.+........                    +.+. .++... ..... +.
T Consensus         3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~   80 (188)
T TIGR00678         3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ   80 (188)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence            34555556654 5799999999999999999987754221                    1111 111110 01111 11


Q ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChH-HHhhcc
Q 046889          226 QDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRA-ACNQMQ  300 (333)
Q Consensus       226 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~-v~~~~~  300 (333)
                      ++++.+.+...                -..+.+-++|+||+....  ..+.+.  +......+.+|++|++.. +...+.
T Consensus        81 i~~i~~~~~~~----------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~  144 (188)
T TIGR00678        81 VRELVEFLSRT----------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR  144 (188)
T ss_pred             HHHHHHHHccC----------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence            11122221110                012456789999986542  222221  122233566777776542 222222


Q ss_pred             cc--eEecCCCCHHHHHHHHHhh
Q 046889          301 AH--IVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       301 ~~--~~~l~~L~~~e~~~lf~~~  321 (333)
                      .+  .+.+.+++.++....+.+.
T Consensus       145 sr~~~~~~~~~~~~~~~~~l~~~  167 (188)
T TIGR00678       145 SRCQVLPFPPLSEEALLQWLIRQ  167 (188)
T ss_pred             hhcEEeeCCCCCHHHHHHHHHHc
Confidence            22  3899999999988888776

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.02  E-value=4.7e-06  Score=75.01  Aligned_cols=156  Identities=13%  Similarity=0.181  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh--------cCCCeEEEEE----------------eC
Q 046889          162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK--------KMFDEVAMAV----------------VS  217 (333)
Q Consensus       162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------~~f~~~~wv~----------------v~  217 (333)
                      ..+.++.+...+..|+  ++++||.+|+|||.-|..+..-....        -+|+..-...                +.
T Consensus        22 ~~~aVk~isf~i~~GE--tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIF   99 (534)
T COG4172          22 TVEAVKGISFDIEAGE--TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIF   99 (534)
T ss_pred             ceEeeccceeeecCCC--EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEe
Confidence            4456777888888888  99999999999999999988765421        1222211111                11


Q ss_pred             CCC----C-HHHH----------------------HHHHHHHhCCCCC---------CCCCHHHHHHHHHHHHccCceEE
Q 046889          218 QTP----S-ITKI----------------------QDEIAGWLGIKEL---------PDNDELVRASLLCKRIEKQRVLV  261 (333)
Q Consensus       218 ~~~----~-~~~~----------------------~~~i~~~l~~~~~---------~~~~~~~~~~~l~~~l~~k~~Ll  261 (333)
                      |.+    + ...+                      .-++++..++++.         .-...+....+|.-.|.+++-||
T Consensus       100 QEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lL  179 (534)
T COG4172         100 QEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLL  179 (534)
T ss_pred             cccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeE
Confidence            111    1 1111                      1233444454311         11223445678999999999999


Q ss_pred             EEeCCCCchhh------hhccCCC-CCCCcEEEEeeCChHHHhhcccceEecC---CCCHHHHHHHHH
Q 046889          262 ILDDLWVQIEL------DRVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDVR---TLTEEESWRSAE  319 (333)
Q Consensus       262 VlDdv~~~~~~------~~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l~---~L~~~e~~~lf~  319 (333)
                      |-|++.+..|.      ..+.-.+ ...|-.++++||+..+...+++.++.|.   ......+..+|.
T Consensus       180 IADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~  247 (534)
T COG4172         180 IADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA  247 (534)
T ss_pred             eecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence            99999877541      2221111 2338889999999999998888885443   344555666665

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.02  E-value=0.00012  Score=66.80  Aligned_cols=166  Identities=13%  Similarity=0.088  Sum_probs=94.1

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCeEEEEEeCCCCCHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDEVAMAVVSQTPSITKIQDE  228 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~~~~~~~~  228 (333)
                      .|.....++|.+.....|...+..++. +.+.|.|+.|+||||||+.+....-....  +...   .....+......+.
T Consensus        18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~   94 (351)
T PRK09112         18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ   94 (351)
T ss_pred             CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence            344556789999999999999988764 45889999999999999998877642110  1111   00001111112222


Q ss_pred             HHHH-------hCCC--CC-----CCCCHHHHHHHHHHHHc-----cCceEEEEeCCCCch--hhhhcc--CCCCCCCcE
Q 046889          229 IAGW-------LGIK--EL-----PDNDELVRASLLCKRIE-----KQRVLVILDDLWVQI--ELDRVG--IPYGNDGCK  285 (333)
Q Consensus       229 i~~~-------l~~~--~~-----~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~  285 (333)
                      +...       +..+  ..     .....++ +..+.+.+.     +++.++|+|++....  ..+.+.  +..+..++.
T Consensus        95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~  173 (351)
T PRK09112         95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL  173 (351)
T ss_pred             HHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence            2211       1000  00     0112233 334454444     366799999987542  222221  112233566


Q ss_pred             EEEeeCChH-HHhhcccc--eEecCCCCHHHHHHHHHhh
Q 046889          286 FLLTSRSRA-ACNQMQAH--IVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       286 vivTTr~~~-v~~~~~~~--~~~l~~L~~~e~~~lf~~~  321 (333)
                      +|++|++.. +...+.++  .+.+.+++.++...++.+.
T Consensus       174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~  212 (351)
T PRK09112        174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL  212 (351)
T ss_pred             EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHh
Confidence            677776654 22222222  3999999999999999874

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=98.01  E-value=5e-06  Score=84.94  Aligned_cols=142  Identities=16%  Similarity=0.235  Sum_probs=84.2

Q ss_pred             cccccchHH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-------------------E
Q 046889          156 FYNFKSRES-TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-------------------V  215 (333)
Q Consensus       156 ~~~~~gr~~-~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-------------------~  215 (333)
                      ....+|... .++.+...+.+++  +.++.|+||+||||..+.+.++..+..   ..+|+                   +
T Consensus       570 L~k~y~~~~~Av~~ls~~V~~ge--cfgLLG~NGAGKtT~f~mltG~~~~t~---G~a~i~g~~i~~~~~~~~~~~~iGy  644 (885)
T KOG0059|consen  570 LSKVYGGKDGAVRGLSFAVPPGE--CFGLLGVNGAGKTTTFKMLTGETKPTS---GEALIKGHDITVSTDFQQVRKQLGY  644 (885)
T ss_pred             eeeeecchhhhhcceEEEecCCc--eEEEecCCCCCchhhHHHHhCCccCCc---ceEEEecCccccccchhhhhhhccc
Confidence            344455444 6666666666777  899999999999999999998876543   22333                   1


Q ss_pred             eCCCC------------------------CHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeC
Q 046889          216 VSQTP------------------------SITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       216 v~~~~------------------------~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                      ++|..                        +........++.+++.+.....      .....-.+.-.+-+.+-++.||+
T Consensus       645 CPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDE  724 (885)
T KOG0059|consen  645 CPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDE  724 (885)
T ss_pred             CCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecC
Confidence            12211                        1122233334444443221111      11122234444456788999999


Q ss_pred             CCCchh-------hhhccCCCCCCCcEEEEeeCChHHHhhcccce
Q 046889          266 LWVQIE-------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       266 v~~~~~-------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      +.+..|       |..+.. ...+|..||+|||+.+.|+.++++.
T Consensus       725 PstGmDP~arr~lW~ii~~-~~k~g~aiiLTSHsMeE~EaLCtR~  768 (885)
T KOG0059|consen  725 PSTGLDPKARRHLWDIIAR-LRKNGKAIILTSHSMEEAEALCTRT  768 (885)
T ss_pred             CCCCCCHHHHHHHHHHHHH-HHhcCCEEEEEcCCHHHHHHHhhhh
Confidence            876533       555522 2333437999999999999888766

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.01  E-value=5.8e-06  Score=82.79  Aligned_cols=138  Identities=17%  Similarity=0.236  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC--------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP--------  220 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~--------  220 (333)
                      ..++++...+..|+  .++|+|++|+|||||++.+.+...+.+.   ++.            .....++|++        
T Consensus       471 ~il~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~  548 (694)
T TIGR01846       471 EVLSNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR  548 (694)
T ss_pred             cccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence            46777777777788  9999999999999999999877544321   000            0011233332        


Q ss_pred             ----------CHHHHHHHHHHHhCC-----------C-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh
Q 046889          221 ----------SITKIQDEIAGWLGI-----------K-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD  273 (333)
Q Consensus       221 ----------~~~~~~~~i~~~l~~-----------~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~  273 (333)
                                +.+++ .+.++..+.           +     .....+ .+.++-.+.+.+-.++-+++||++.+..|-.
T Consensus       549 eNi~~~~~~~~~~~i-~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~  627 (694)
T TIGR01846       549 DNIALCNPGAPFEHV-IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE  627 (694)
T ss_pred             HHHhcCCCCCCHHHH-HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence                      11222 122222211           1     011122 3445667888888999999999998764421


Q ss_pred             ------hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ------RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ------~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                            ...... ..+..+|++||+...... .++.+.+
T Consensus       628 ~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~ii~l  664 (694)
T TIGR01846       628 SEALIMRNMREI-CRGRTVIIIAHRLSTVRA-CDRIIVL  664 (694)
T ss_pred             HHHHHHHHHHHH-hCCCEEEEEeCChHHHHh-CCEEEEE
Confidence                  111111 236789999999988654 4444433

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.00  E-value=4.5e-05  Score=71.40  Aligned_cols=129  Identities=19%  Similarity=0.198  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR  258 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~  258 (333)
                      ..+.|+|+.|+|||+|++.+++.......-...+++.      ..++...+...+...     ..    ..+.+.+.+ .
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~----~~~~~~~~~-~  200 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KM----EEFKEKYRS-V  200 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CH----HHHHHHHHh-C
Confidence            3688999999999999999998876432112233442      234444455444321     12    223333332 4


Q ss_pred             eEEEEeCCCCch-------hhhhccCCCCCCCcEEEEeeCChH-H--------Hhhcccc-eEecCCCCHHHHHHHHHhh
Q 046889          259 VLVILDDLWVQI-------ELDRVGIPYGNDGCKFLLTSRSRA-A--------CNQMQAH-IVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       259 ~LlVlDdv~~~~-------~~~~l~~~~~~~g~~vivTTr~~~-v--------~~~~~~~-~~~l~~L~~~e~~~lf~~~  321 (333)
                      -+|+|||+....       .+..+.-.....|..+|+|+.... .        ..++... .+.+++.+.++-..+++++
T Consensus       201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~  280 (405)
T TIGR00362       201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK  280 (405)
T ss_pred             CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence            589999996431       122211111223566777776432 1        2233332 3888999999999999887


Q ss_pred             cc
Q 046889          322 RR  323 (333)
Q Consensus       322 a~  323 (333)
                      +-
T Consensus       281 ~~  282 (405)
T TIGR00362       281 AE  282 (405)
T ss_pred             HH
Confidence            64

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.00  E-value=4.2e-05  Score=71.09  Aligned_cols=132  Identities=17%  Similarity=0.175  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC
Q 046889          162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN  241 (333)
Q Consensus       162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~  241 (333)
                      +......+...+..... ++.|.||-++|||||++.+.......     .+++..-+......-+.+             
T Consensus        22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d-------------   82 (398)
T COG1373          22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLD-------------   82 (398)
T ss_pred             HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHH-------------
Confidence            44555666666554443 99999999999999996666544321     333332221110100011             


Q ss_pred             CHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCc-EEEEeeCChHH-----Hhhcccce--EecCCCCHHH
Q 046889          242 DELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGC-KFLLTSRSRAA-----CNQMQAHI--VDVRTLTEEE  313 (333)
Q Consensus       242 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~-~vivTTr~~~v-----~~~~~~~~--~~l~~L~~~e  313 (333)
                          ....+...-..++.+++||+|.+..+|....-.+.+.|- +|++|+-+...     +.....+.  +.+-||+-.|
T Consensus        83 ----~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~E  158 (398)
T COG1373          83 ----LLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFRE  158 (398)
T ss_pred             ----HHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHH
Confidence                111111111227789999999999988877433333332 68888877655     34444444  8999999988


Q ss_pred             HHH
Q 046889          314 SWR  316 (333)
Q Consensus       314 ~~~  316 (333)
                      ...
T Consensus       159 fl~  161 (398)
T COG1373         159 FLK  161 (398)
T ss_pred             HHh
Confidence            865

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=97.99  E-value=2.5e-05  Score=66.49  Aligned_cols=111  Identities=18%  Similarity=0.184  Sum_probs=56.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEE---EEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAM---AVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLCK  252 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w---v~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~  252 (333)
                      .++.|+||||.||||+++.+....-.. +-.+.++   ..++.       ..++...++..+.   .......-...+..
T Consensus        31 ~~~~l~Gpn~sGKstllr~i~~~~~l~-~~g~~vp~~~~~i~~-------~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~  102 (216)
T cd03284          31 QILLITGPNMAGKSTYLRQVALIALLA-QIGSFVPASKAEIGV-------VDRIFTRIGASDDLAGGRSTFMVEMVETAN  102 (216)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHHh-ccCCeeccccceecc-------eeeEeccCCchhhhccCcchHHHHHHHHHH
Confidence            589999999999999999986432110 1011111   00000       0011111111110   11111111223444


Q ss_pred             HHc--cCceEEEEeCC---CCchhhhh----ccCCCCCC-CcEEEEeeCChHHHh
Q 046889          253 RIE--KQRVLVILDDL---WVQIELDR----VGIPYGND-GCKFLLTSRSRAACN  297 (333)
Q Consensus       253 ~l~--~k~~LlVlDdv---~~~~~~~~----l~~~~~~~-g~~vivTTr~~~v~~  297 (333)
                      .+.  .++-|++||++   .+..+-..    +...+... ++.+|+|||+.++..
T Consensus       103 ~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~  157 (216)
T cd03284         103 ILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTE  157 (216)
T ss_pred             HHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHH
Confidence            443  58899999999   55443211    11111233 788999999987644

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.98  E-value=7.9e-05  Score=71.91  Aligned_cols=128  Identities=18%  Similarity=0.159  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRV  259 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~  259 (333)
                      .+.|+|+.|+|||.|++.+++.......-..+.++.      ..+++..+...+..     ..    ...+.+.+.+ .-
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~-----~~----~~~f~~~y~~-~D  379 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRD-----GK----GDSFRRRYRE-MD  379 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHh-----cc----HHHHHHHhhc-CC
Confidence            589999999999999999998875321112233432      23444444443321     01    1223333433 46


Q ss_pred             EEEEeCCCCc-------hhhhhccCCCCCCCcEEEEeeCChH---------HHhhcccce-EecCCCCHHHHHHHHHhhc
Q 046889          260 LVILDDLWVQ-------IELDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAHI-VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       260 LlVlDdv~~~-------~~~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~~-~~l~~L~~~e~~~lf~~~a  322 (333)
                      +|+|||+...       ..+..+.......|..|||||+...         +..++.... +.|++.+.+.-..++++++
T Consensus       380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka  459 (617)
T PRK14086        380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA  459 (617)
T ss_pred             EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence            8999999643       1222332222334666888887632         233344444 8999999999999999886


Q ss_pred             c
Q 046889          323 R  323 (333)
Q Consensus       323 ~  323 (333)
                      -
T Consensus       460 ~  460 (617)
T PRK14086        460 V  460 (617)
T ss_pred             H
Confidence            4

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.98  E-value=7.4e-05  Score=64.15  Aligned_cols=127  Identities=10%  Similarity=0.097  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC
Q 046889          163 ESTMKDIMEAMKD-EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDN  241 (333)
Q Consensus       163 ~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~  241 (333)
                      ...+..+..+... .....+.|+|+.|+|||+||+.+++..... .. ...++...+.      ...    +        
T Consensus        26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~-~~~~i~~~~~------~~~----~--------   85 (227)
T PRK08903         26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-GR-NARYLDAASP------LLA----F--------   85 (227)
T ss_pred             HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CC-cEEEEehHHh------HHH----H--------
Confidence            3444455554431 233478999999999999999999876432 21 2233332221      000    0        


Q ss_pred             CHHHHHHHHHHHHccCceEEEEeCCCCchh-----hhhccCCCCCCCc-EEEEeeCChHHHh--------hccc-ceEec
Q 046889          242 DELVRASLLCKRIEKQRVLVILDDLWVQIE-----LDRVGIPYGNDGC-KFLLTSRSRAACN--------QMQA-HIVDV  306 (333)
Q Consensus       242 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~g~-~vivTTr~~~v~~--------~~~~-~~~~l  306 (333)
                                .. ..+..+|++||+.....     +..+.......+. .+|+|++......        .+.. ..+.+
T Consensus        86 ----------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l  154 (227)
T PRK08903         86 ----------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYEL  154 (227)
T ss_pred             ----------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEe
Confidence                      01 12345899999964321     2122111122344 3666665433211        3322 34899


Q ss_pred             CCCCHHHHHHHHHh
Q 046889          307 RTLTEEESWRSAEG  320 (333)
Q Consensus       307 ~~L~~~e~~~lf~~  320 (333)
                      .++++++-..++.+
T Consensus       155 ~pl~~~~~~~~l~~  168 (227)
T PRK08903        155 KPLSDADKIAALKA  168 (227)
T ss_pred             cCCCHHHHHHHHHH
Confidence            99999887777665

>COG3910 Predicted ATPase [General function prediction only]

Probab=97.97  E-value=4e-05  Score=62.09  Aligned_cols=57  Identities=16%  Similarity=0.265  Sum_probs=34.1

Q ss_pred             HHHHHHccCceEEEEeCCCCchh----hhhc--cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          249 LLCKRIEKQRVLVILDDLWVQIE----LDRV--GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       249 ~l~~~l~~k~~LlVlDdv~~~~~----~~~l--~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      -+.+.+. ..=+.+||++.....    +.-+  .......|+.|||.||++-+...-+...+.+
T Consensus       139 i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~  201 (233)
T COG3910         139 IFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEI  201 (233)
T ss_pred             HHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEE
Confidence            3444443 334778999987632    2222  2233455899999999998755444444433

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.97  E-value=3.5e-05  Score=65.91  Aligned_cols=34  Identities=32%  Similarity=0.515  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV  215 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~  215 (333)
                      .++|+|+.|+|||||+..+.....  ..|..+.+++
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t   48 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLIT   48 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEe
Confidence            578999999999999999987754  5676666554

This is thought to be an ATPase involved in viral DNA packaging [].

>PTZ00243 ABC transporter; Provisional

Probab=97.97  E-value=1.4e-05  Score=86.14  Aligned_cols=138  Identities=17%  Similarity=0.186  Sum_probs=79.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-CC-eEEEEEeCCCCCH----------------HHHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-FD-EVAMAVVSQTPSI----------------TKIQ  226 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~-~~~wv~v~~~~~~----------------~~~~  226 (333)
                      .++++...+..|+  +++|+|++|+|||||++.+.+...+... .. .....+++|.+..                ..-.
T Consensus       675 iL~~isl~i~~G~--~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~  752 (1560)
T PTZ00243        675 LLRDVSVSVPRGK--LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARL  752 (1560)
T ss_pred             eEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHH
Confidence            3444555555566  8999999999999999999987643221 00 0112234444211                0001


Q ss_pred             HH---------HHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-------hccCCCCCC
Q 046889          227 DE---------IAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-------RVGIPYGND  282 (333)
Q Consensus       227 ~~---------i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-------~l~~~~~~~  282 (333)
                      ..         .++.+  |..     .....+ .+..+..|.+.+-.++-+++|||+.+..|..       .+... ...
T Consensus       753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~-~~~  831 (1560)
T PTZ00243        753 ADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALA  831 (1560)
T ss_pred             HHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-hhC
Confidence            11         12222  111     111122 3455667888999999999999998875522       11111 123


Q ss_pred             CcEEEEeeCChHHHhhcccceEec
Q 046889          283 GCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       283 g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      |..+|++||+...... ++..+.|
T Consensus       832 ~~TvIlvTH~~~~~~~-ad~ii~l  854 (1560)
T PTZ00243        832 GKTRVLATHQVHVVPR-ADYVVAL  854 (1560)
T ss_pred             CCEEEEEeCCHHHHHh-CCEEEEE
Confidence            7789999999988754 4444443

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.96  E-value=0.00046  Score=65.45  Aligned_cols=25  Identities=28%  Similarity=0.554  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+++|+|++|+||||++..+.....
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la  375 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFA  375 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3999999999999999998877654

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.96  E-value=7e-05  Score=71.06  Aligned_cols=129  Identities=19%  Similarity=0.169  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQR  258 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~  258 (333)
                      .-+.|+|+.|+|||+|++.+.+.......-....++..      ..+...+...+...     .    ...+.+.+. +.
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~-~~  212 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----T----MEEFKEKYR-SV  212 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----c----HHHHHHHHh-cC
Confidence            46889999999999999999998764321222334322      33344444444321     1    123334444 45


Q ss_pred             eEEEEeCCCCc-------hhhhhccCCCCCCCcEEEEeeCChH---------HHhhcccc-eEecCCCCHHHHHHHHHhh
Q 046889          259 VLVILDDLWVQ-------IELDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAH-IVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       259 ~LlVlDdv~~~-------~~~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~-~~~l~~L~~~e~~~lf~~~  321 (333)
                      -+|+|||+...       ..+..+.-.....|..+|+|+....         +..++... .+.+++.+.++...+++++
T Consensus       213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~  292 (450)
T PRK00149        213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK  292 (450)
T ss_pred             CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence            58999999642       1122221122233556777776542         12334333 3889999999999999988


Q ss_pred             cc
Q 046889          322 RR  323 (333)
Q Consensus       322 a~  323 (333)
                      +-
T Consensus       293 ~~  294 (450)
T PRK00149        293 AE  294 (450)
T ss_pred             HH
Confidence            74

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.96  E-value=0.00025  Score=67.53  Aligned_cols=51  Identities=24%  Similarity=0.298  Sum_probs=41.4

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      |.....++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+.....
T Consensus        12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953         12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            33456788999999999999987654 3567899999999999999987653

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.94  E-value=2.4e-05  Score=77.99  Aligned_cols=151  Identities=14%  Similarity=0.227  Sum_probs=89.1

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-C---CCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-M---FDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~---f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      ..+.+||++++..+...|......-+.++|++|+|||+|++.+........ .   .++.+|..     +...+    +.
T Consensus       185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la  255 (758)
T PRK11034        185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA  255 (758)
T ss_pred             CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence            457899999999999988765444567899999999999999987653221 1   12333421     11111    10


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHH-ccCceEEEEeCCCCc----------hhhhhccCCCCCCCc-EEEEeeCChH-----
Q 046889          232 WLGIKELPDNDELVRASLLCKRI-EKQRVLVILDDLWVQ----------IELDRVGIPYGNDGC-KFLLTSRSRA-----  294 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~g~-~vivTTr~~~-----  294 (333)
                        +.  ......+.....+...+ ..++.+|++||+...          .+...+..|....|. +||-+|...+     
T Consensus       256 --G~--~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~  331 (758)
T PRK11034        256 --GT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIF  331 (758)
T ss_pred             --cc--chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHh
Confidence              10  01112233333343333 346789999998632          223333344434444 4555554433     


Q ss_pred             -----HHhhcccceEecCCCCHHHHHHHHHhh
Q 046889          295 -----ACNQMQAHIVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       295 -----v~~~~~~~~~~l~~L~~~e~~~lf~~~  321 (333)
                           +..++  ..+.++..+.++..++++..
T Consensus       332 ~~D~AL~rRF--q~I~v~ePs~~~~~~IL~~~  361 (758)
T PRK11034        332 EKDRALARRF--QKIDITEPSIEETVQIINGL  361 (758)
T ss_pred             hccHHHHhhC--cEEEeCCCCHHHHHHHHHHH
Confidence                 23333  23899999999999999864

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.94  E-value=3.7e-05  Score=65.54  Aligned_cols=115  Identities=17%  Similarity=0.107  Sum_probs=58.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH-HHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ-AKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLCKRI  254 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~-~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l  254 (333)
                      .++.|.|++|.||||+.+.+... ...+.  .+..|..-..    -....+|+..++..+.   ...+...-...+...+
T Consensus        32 ~~~~itG~N~~GKStll~~i~~~~~la~~--G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il  105 (222)
T cd03287          32 YCQIITGPNMGGKSSYIRQVALITIMAQI--GSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL  105 (222)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHHhC--CCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence            48899999999999999999873 32221  1222211000    0001111112221111   1112222233344444


Q ss_pred             c--cCceEEEEeCCCCc---hhh----hhccCCCCC-CCcEEEEeeCChHHHhhc
Q 046889          255 E--KQRVLVILDDLWVQ---IEL----DRVGIPYGN-DGCKFLLTSRSRAACNQM  299 (333)
Q Consensus       255 ~--~k~~LlVlDdv~~~---~~~----~~l~~~~~~-~g~~vivTTr~~~v~~~~  299 (333)
                      .  +++.|++||++...   .+-    ..+...+.. .++.+|++||+..++...
T Consensus       106 ~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~  160 (222)
T cd03287         106 SNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL  160 (222)
T ss_pred             HhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence            4  47899999998433   111    111111222 378999999999986543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PLN03140 ABC transporter G family member; Provisional

Probab=97.93  E-value=2.1e-05  Score=84.00  Aligned_cols=79  Identities=8%  Similarity=-0.017  Sum_probs=48.1

Q ss_pred             HHHHHHHccCceEEEEeCCCCchhh------hhccCCC-CCCCcEEEEeeCCh-HHHhhcccceEec------CCCCHHH
Q 046889          248 SLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPY-GNDGCKFLLTSRSR-AACNQMQAHIVDV------RTLTEEE  313 (333)
Q Consensus       248 ~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~-~~~g~~vivTTr~~-~v~~~~~~~~~~l------~~L~~~e  313 (333)
                      -.+.+.+..++-++++|++.+..|-      ....... ...|..||+|+|.+ .....+.+..+.|      -.-+.++
T Consensus       345 Vsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~  424 (1470)
T PLN03140        345 VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDH  424 (1470)
T ss_pred             eeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHH
Confidence            3455566667779999999877542      1221222 22377899999975 2333344444322      2246788


Q ss_pred             HHHHHHhhcccCC
Q 046889          314 SWRSAEGKRRVCL  326 (333)
Q Consensus       314 ~~~lf~~~a~~~~  326 (333)
                      ...+|....|.++
T Consensus       425 ~~~yF~~lGf~cP  437 (1470)
T PLN03140        425 ILEFFESCGFKCP  437 (1470)
T ss_pred             HHHHHHHcCCCCC
Confidence            9999998876543

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.93  E-value=0.00013  Score=63.69  Aligned_cols=58  Identities=17%  Similarity=0.222  Sum_probs=35.2

Q ss_pred             HHHHHHHHc----cCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          247 ASLLCKRIE----KQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       247 ~~~l~~~l~----~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ...+...+.    ..+-++++|++.+..+      +..+..... .|..||++||..++... ++..+.+
T Consensus       174 r~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~-~d~v~~~  241 (251)
T cd03273         174 LVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNN-ANVLFRT  241 (251)
T ss_pred             HHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHh-CCEEEEE
Confidence            344555554    4567999999987643      222212222 36679999999877664 4444443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=97.92  E-value=1.4e-06  Score=70.90  Aligned_cols=43  Identities=21%  Similarity=0.337  Sum_probs=32.2

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      |.-..++++...+..++  .-.|+||||+||||++-.|.+..+++
T Consensus        16 ~GF~Aln~ls~~v~~Ge--lr~lIGpNGAGKTT~mD~ItGKtrp~   58 (249)
T COG4674          16 GGFKALNDLSFSVDPGE--LRVLIGPNGAGKTTLMDVITGKTRPQ   58 (249)
T ss_pred             cceeeeeeeEEEecCCe--EEEEECCCCCCceeeeeeecccCCCC
Confidence            33345566666667777  66789999999999999988776543

>PRK08116 hypothetical protein; Validated

Probab=97.92  E-value=4.5e-05  Score=67.06  Aligned_cols=99  Identities=21%  Similarity=0.185  Sum_probs=56.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRV  259 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~  259 (333)
                      .+.|+|+.|+|||.||..+++.....  -...++++      ...++..+...+...  ...+    ...+.+.+.+- -
T Consensus       116 gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~--~~~~----~~~~~~~l~~~-d  180 (268)
T PRK08116        116 GLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSS--GKED----ENEIIRSLVNA-D  180 (268)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcc--cccc----HHHHHHHhcCC-C
Confidence            58899999999999999999987643  22344443      344555555544321  1111    22234444433 4


Q ss_pred             EEEEeCCCC--chhhh-----hccCCCCCCCcEEEEeeCCh
Q 046889          260 LVILDDLWV--QIELD-----RVGIPYGNDGCKFLLTSRSR  293 (333)
Q Consensus       260 LlVlDdv~~--~~~~~-----~l~~~~~~~g~~vivTTr~~  293 (333)
                      ||||||+..  ..+|.     .+.-.....+..+|+||...
T Consensus       181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~  221 (268)
T PRK08116        181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS  221 (268)
T ss_pred             EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            899999942  22222     22111122356688888754

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=97.91  E-value=0.00022  Score=67.47  Aligned_cols=51  Identities=20%  Similarity=0.301  Sum_probs=42.5

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      |.....++|.+..+..|...+..++. +.+.++|+.|+||||+|+.+.....
T Consensus        13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~   64 (451)
T PRK06305         13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN   64 (451)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34456789999999999999987765 5688999999999999999987653

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.91  E-value=0.0011  Score=66.75  Aligned_cols=156  Identities=19%  Similarity=0.174  Sum_probs=85.6

Q ss_pred             cccccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKD------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI  229 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  229 (333)
                      ...++|.+...+.|..++..      ....++.++||+|+||||+++.+.....  ..|..   +..+...+...+...-
T Consensus       321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~~~---i~~~~~~d~~~i~g~~  395 (784)
T PRK10787        321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKYVR---MALGGVRDEAEIRGHR  395 (784)
T ss_pred             hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEE---EEcCCCCCHHHhccch
Confidence            34578999999999887752      2334899999999999999999998764  22211   2223222322211110


Q ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh---------hhhc--------------cCCCCCCCcEE
Q 046889          230 AGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE---------LDRV--------------GIPYGNDGCKF  286 (333)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------~~~l--------------~~~~~~~g~~v  286 (333)
                       .     .+...........+... .....+++||++.....         +..+              ..++.-.+..+
T Consensus       396 -~-----~~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~  468 (784)
T PRK10787        396 -R-----TYIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF  468 (784)
T ss_pred             -h-----ccCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence             0     00111111222223222 22445789998853311         1111              11222234555


Q ss_pred             EEeeCChHHHhhcccce--EecCCCCHHHHHHHHHhhcc
Q 046889          287 LLTSRSRAACNQMQAHI--VDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       287 ivTTr~~~v~~~~~~~~--~~l~~L~~~e~~~lf~~~a~  323 (333)
                      |.|+....+...+-++.  +.+.+++++|-.++.+++..
T Consensus       469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~  507 (784)
T PRK10787        469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL  507 (784)
T ss_pred             EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence            66665544322232332  89999999999888877764

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.91  E-value=0.0001  Score=70.13  Aligned_cols=153  Identities=12%  Similarity=0.129  Sum_probs=82.7

Q ss_pred             ccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCC
Q 046889          157 YNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTP  220 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~  220 (333)
                      ..+.|.+..++.+...+.-             ...+-+.++||.|+|||++++.+++.......   .....++.+... 
T Consensus       182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~-  260 (512)
T TIGR03689       182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP-  260 (512)
T ss_pred             HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence            4456778887777666531             12346899999999999999999988642211   112233333221 


Q ss_pred             CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCch---------h-----hhhccC---C
Q 046889          221 SITKIQDEIAGWLGIKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQI---------E-----LDRVGI---P  278 (333)
Q Consensus       221 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~---------~-----~~~l~~---~  278 (333)
                         .++    ..     +.. ........+.+..     .+++++|+|||++...         +     +..+..   .
T Consensus       261 ---eLl----~k-----yvG-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg  327 (512)
T TIGR03689       261 ---ELL----NK-----YVG-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG  327 (512)
T ss_pred             ---hhc----cc-----ccc-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence               111    00     000 0111111122111     2368999999986421         1     112211   1


Q ss_pred             CCC-CCcEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhcc
Q 046889          279 YGN-DGCKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       279 ~~~-~g~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      ... .+..||.||...+....  ..    +..|.+...+.++..++|.++..
T Consensus       328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~  379 (512)
T TIGR03689       328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT  379 (512)
T ss_pred             cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence            111 24456667766554221  11    22388999999999999988753

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PLN03130 ABC transporter C family member; Provisional

Probab=97.91  E-value=2.7e-05  Score=84.23  Aligned_cols=132  Identities=15%  Similarity=0.157  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-C-CC-eEEEEEeCCCCCH----------------HH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-M-FD-EVAMAVVSQTPSI----------------TK  224 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~-f~-~~~wv~v~~~~~~----------------~~  224 (333)
                      ..++++...+..|+  .++|+|+.|+|||||++.+.+...+.. . .. .....+++|.+.+                ++
T Consensus       631 ~vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e  708 (1622)
T PLN03130        631 PTLSNINLDVPVGS--LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPE  708 (1622)
T ss_pred             ceeeceeEEecCCC--EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHH
Confidence            35677776667777  999999999999999999999876543 1 10 1112345555421                12


Q ss_pred             HHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh-------hhccCCCC
Q 046889          225 IQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL-------DRVGIPYG  280 (333)
Q Consensus       225 ~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-------~~l~~~~~  280 (333)
                      -..+.++..++.                 +..-...+..+-.|.+.+-.++-+++|||+.+..|-       ....... 
T Consensus       709 ~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~-  787 (1622)
T PLN03130        709 RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE-  787 (1622)
T ss_pred             HHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH-
Confidence            233333333321                 111112344566788888889999999999877442       1211111 


Q ss_pred             CCCcEEEEeeCChHHHhh
Q 046889          281 NDGCKFLLTSRSRAACNQ  298 (333)
Q Consensus       281 ~~g~~vivTTr~~~v~~~  298 (333)
                      ..+..+|++||.......
T Consensus       788 l~~kTvIlVTH~l~~l~~  805 (1622)
T PLN03130        788 LRGKTRVLVTNQLHFLSQ  805 (1622)
T ss_pred             hcCCEEEEEECCHhHHHh
Confidence            136778999999877554

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.90  E-value=2.4e-05  Score=84.29  Aligned_cols=137  Identities=15%  Similarity=0.159  Sum_probs=78.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCCH--HHH--------------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPSI--TKI--------------  225 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~~--~~~--------------  225 (333)
                      .++++...+..|+  +++|+|++|+|||||++.+.+...+...   ++.. ..+++|.+.+  ..+              
T Consensus       441 ~l~~i~l~i~~G~--~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~-iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~  517 (1490)
T TIGR01271       441 VLKNISFKLEKGQ--LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-ISFSPQTSWIMPGTIKDNIIFGLSYDEYR  517 (1490)
T ss_pred             ceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE-EEEEeCCCccCCccHHHHHHhccccchHH
Confidence            3445555555566  8999999999999999999987654321   1111 2234444311  001              


Q ss_pred             HHHHHHHhCC---------CC-------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hh-hccCCCCC
Q 046889          226 QDEIAGWLGI---------KE-------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LD-RVGIPYGN  281 (333)
Q Consensus       226 ~~~i~~~l~~---------~~-------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~-~l~~~~~~  281 (333)
                      ...+++.+++         .+       ....+ .+..+-.|.+.+-.++-+++|||+.+..|      +. .+..... 
T Consensus       518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-  596 (1490)
T TIGR01271       518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-  596 (1490)
T ss_pred             HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence            1111221111         00       01112 34456678888888999999999987744      21 1111111 


Q ss_pred             CCcEEEEeeCChHHHhhcccceEec
Q 046889          282 DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .|..+|++||+...... +++.+.+
T Consensus       597 ~~~tvilvtH~~~~~~~-ad~ii~l  620 (1490)
T TIGR01271       597 SNKTRILVTSKLEHLKK-ADKILLL  620 (1490)
T ss_pred             cCCeEEEEeCChHHHHh-CCEEEEE
Confidence            37789999999988764 4444444

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03232 ABC transporter C family member; Provisional

Probab=97.90  E-value=2.4e-05  Score=84.34  Aligned_cols=131  Identities=15%  Similarity=0.130  Sum_probs=79.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-C-C-eEEEEEeCCCCCH----------------HHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-F-D-EVAMAVVSQTPSI----------------TKI  225 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f-~-~~~wv~v~~~~~~----------------~~~  225 (333)
                      .++++...+..|+  .++|+|++|+|||||++.+.+...+... . . .....+++|.+.+                ++-
T Consensus       632 vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~  709 (1495)
T PLN03232        632 TLSDINLEIPVGS--LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESER  709 (1495)
T ss_pred             eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHH
Confidence            4666666666777  8999999999999999999987654321 1 0 0112345555421                112


Q ss_pred             HHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh-------hhccCCCCC
Q 046889          226 QDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL-------DRVGIPYGN  281 (333)
Q Consensus       226 ~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-------~~l~~~~~~  281 (333)
                      ..++++..++.                 +..-...+..+-.|.+.+-.++-+++|||+.+..|-       ..+... ..
T Consensus       710 ~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~-~l  788 (1495)
T PLN03232        710 YWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKD-EL  788 (1495)
T ss_pred             HHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhh-hh
Confidence            23333333321                 001111344566788888889999999999877441       222111 12


Q ss_pred             CCcEEEEeeCChHHHhh
Q 046889          282 DGCKFLLTSRSRAACNQ  298 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~~  298 (333)
                      .+..+|++||.......
T Consensus       789 ~~kT~IlvTH~~~~l~~  805 (1495)
T PLN03232        789 KGKTRVLVTNQLHFLPL  805 (1495)
T ss_pred             cCCEEEEEECChhhHHh
Confidence            36678889998876544

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.89  E-value=2.5e-05  Score=60.66  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      |.|+|+.|+||||+++.+.....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            57999999999999999998874

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.89  E-value=3.7e-05  Score=83.07  Aligned_cols=139  Identities=14%  Similarity=0.176  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCCH----------------HH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPSI----------------TK  224 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~~----------------~~  224 (333)
                      ..++++...+..|+  .++|+|++|+|||||++.+.+...+...   ++. ...+++|.+..                .+
T Consensus       652 ~~l~~isl~i~~G~--~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~  728 (1522)
T TIGR00957       652 PTLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-SVAYVPQQAWIQNDSLRENILFGKALNEK  728 (1522)
T ss_pred             ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-EEEEEcCCccccCCcHHHHhhcCCccCHH
Confidence            35666666666777  8999999999999999999987654321   111 12344444311                01


Q ss_pred             HHHHHHHHhCCC-----------------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhh-------hhccCCC-
Q 046889          225 IQDEIAGWLGIK-----------------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIEL-------DRVGIPY-  279 (333)
Q Consensus       225 ~~~~i~~~l~~~-----------------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-------~~l~~~~-  279 (333)
                      -..++++.....                 ...-...+..+-.|.+.+-.++-+++|||+.+..|-       +.+..+. 
T Consensus       729 ~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~  808 (1522)
T TIGR00957       729 YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG  808 (1522)
T ss_pred             HHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence            112222222110                 011112345566788899999999999999877442       2221111 


Q ss_pred             CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          280 GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       280 ~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ...+..+|++||+...... +++.+.|
T Consensus       809 ~~~~~tvIlvTH~~~~l~~-~D~ii~l  834 (1522)
T TIGR00957       809 VLKNKTRILVTHGISYLPQ-VDVIIVM  834 (1522)
T ss_pred             hhcCCEEEEEeCChhhhhh-CCEEEEe
Confidence            1236789999999988765 4444444

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.89  E-value=0.00014  Score=63.15  Aligned_cols=57  Identities=9%  Similarity=0.166  Sum_probs=34.8

Q ss_pred             HHHHHHHHc----cCceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEe
Q 046889          247 ASLLCKRIE----KQRVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVD  305 (333)
Q Consensus       247 ~~~l~~~l~----~k~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~  305 (333)
                      ...+...+.    ..+-++++|++.+..+      +......... ++.||+|||..++. .++++.+.
T Consensus       166 r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~-~~~d~i~~  232 (243)
T cd03272         166 LVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELL-EVADKFYG  232 (243)
T ss_pred             HHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHH-hhCCEEEE
Confidence            445666663    3567999999987644      2222222222 67799999987765 45555543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=97.89  E-value=8.6e-06  Score=73.58  Aligned_cols=124  Identities=15%  Similarity=0.318  Sum_probs=75.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcC--CC----------eEEEEEeCCCC----CHHHH-------------HHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKM--FD----------EVAMAVVSQTP----SITKI-------------QDEIA  230 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~----------~~~wv~v~~~~----~~~~~-------------~~~i~  230 (333)
                      ++.|+|.+|+|||||++.+.+.......  +.          ..+-..++...    +...+             .-.|+
T Consensus       411 vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveIL  490 (593)
T COG2401         411 VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEIL  490 (593)
T ss_pred             eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHHHH
Confidence            8999999999999999999887643211  10          00111111111    11122             23455


Q ss_pred             HHhCCCC-------CCC-CCHHHHHHHHHHHHccCceEEEEeCCCCchh-------hhhccCCCCCCCcEEEEeeCChHH
Q 046889          231 GWLGIKE-------LPD-NDELVRASLLCKRIEKQRVLVILDDLWVQIE-------LDRVGIPYGNDGCKFLLTSRSRAA  295 (333)
Q Consensus       231 ~~l~~~~-------~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~g~~vivTTr~~~v  295 (333)
                      +..|+.+       ... .+.+.-..+|.+.+.+++-+++.|+.....|       ...+.-.....|..++++||.+++
T Consensus       491 nraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv  570 (593)
T COG2401         491 NRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV  570 (593)
T ss_pred             HhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence            5555531       111 1233446789999999999999998876543       112211112348899999999999


Q ss_pred             Hhhcccce
Q 046889          296 CNQMQAHI  303 (333)
Q Consensus       296 ~~~~~~~~  303 (333)
                      .+.+....
T Consensus       571 ~~AL~PD~  578 (593)
T COG2401         571 GNALRPDT  578 (593)
T ss_pred             HhccCCce
Confidence            88886655

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.89  E-value=4e-05  Score=81.97  Aligned_cols=158  Identities=12%  Similarity=0.080  Sum_probs=90.3

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH-----hhc--------------CCCeEEEEEeCCCC------
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-----EKK--------------MFDEVAMAVVSQTP------  220 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-----~~~--------------~f~~~~wv~v~~~~------  220 (333)
                      ++++...+.+|+  +++|+|++|+|||||++.+.+...     ..+              .+.. ...++.|..      
T Consensus        77 L~~vs~~i~~Ge--~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~-~i~yv~Q~d~~~~~l  153 (1394)
T TIGR00956        77 LKPMDGLIKPGE--LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRG-DVVYNAETDVHFPHL  153 (1394)
T ss_pred             eeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCc-eeEEeccccccCCCC
Confidence            334444445566  999999999999999999987641     110              0110 012233321      


Q ss_pred             CH----------------------H----HHHHHHHHHhCCCCCC-----------CCCHHHHHHHHHHHHccCceEEEE
Q 046889          221 SI----------------------T----KIQDEIAGWLGIKELP-----------DNDELVRASLLCKRIEKQRVLVIL  263 (333)
Q Consensus       221 ~~----------------------~----~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l~~k~~LlVl  263 (333)
                      ++                      .    ...+.+++.+++....           -...+..+-.+.+.|..++-++++
T Consensus       154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll  233 (1394)
T TIGR00956       154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW  233 (1394)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence            10                      0    1123356666664211           112344556677788888889999


Q ss_pred             eCCCCchhh------hhccCCCC-CCCcEEEEeeCCh-HHHhhcccceEecC------CCCHHHHHHHHHhhcccCC
Q 046889          264 DDLWVQIEL------DRVGIPYG-NDGCKFLLTSRSR-AACNQMQAHIVDVR------TLTEEESWRSAEGKRRVCL  326 (333)
Q Consensus       264 Ddv~~~~~~------~~l~~~~~-~~g~~vivTTr~~-~v~~~~~~~~~~l~------~L~~~e~~~lf~~~a~~~~  326 (333)
                      |++.+..|.      ..+..... ..|..||+|+|+. .....+.++.+.|.      .-+.+++...|....|.+.
T Consensus       234 DEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p  310 (1394)
T TIGR00956       234 DNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP  310 (1394)
T ss_pred             eCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCC
Confidence            999877542      22212222 2377899999985 33334444442222      2357888999988765443

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.88  E-value=0.00016  Score=67.11  Aligned_cols=146  Identities=13%  Similarity=0.191  Sum_probs=80.2

Q ss_pred             ccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          157 YNFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ..+.|-+...+.|...+.    .         ...+-+.++||+|+|||+||+.+.+...  ..|     +.+..    .
T Consensus       145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f-----i~i~~----s  213 (398)
T PTZ00454        145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF-----IRVVG----S  213 (398)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh----H
Confidence            456677777776665542    1         1345789999999999999999998753  122     22211    1


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch------------h----hhhccCC---C-CCCC
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI------------E----LDRVGIP---Y-GNDG  283 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~---~-~~~g  283 (333)
                      .+...   .++      .........+.......+++|+|||+....            .    +..+...   + ...+
T Consensus       214 ~l~~k---~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~  284 (398)
T PTZ00454        214 EFVQK---YLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN  284 (398)
T ss_pred             HHHHH---hcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence            11111   111      111112222333334578999999975320            0    1111111   1 2236


Q ss_pred             cEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhc
Q 046889          284 CKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       284 ~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..||+||+..+....  ..    ...+.+...+.++...+|+...
T Consensus       285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~  329 (398)
T PTZ00454        285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT  329 (398)
T ss_pred             EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence            678999987765322  11    1227787777888777777543

>PRK08118 topology modulation protein; Reviewed

Probab=97.88  E-value=3.9e-05  Score=62.56  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhh-cCCCeEEE
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEK-KMFDEVAM  213 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~w  213 (333)
                      .|.|+|++|+||||||+.++...... -+|+...|
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            58999999999999999999887543 34565654

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=97.88  E-value=0.00012  Score=73.59  Aligned_cols=119  Identities=17%  Similarity=0.137  Sum_probs=59.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH-HhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQA-KEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL---PDNDELVRASLLCK  252 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~-~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~  252 (333)
                      +.+++.|+|||+.||||+++.+.-.. -.+...    ++.+.... .-.++..|+..++..+.   ...+...-...+..
T Consensus       326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~----~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~  400 (782)
T PRK00409        326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGL----PIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR  400 (782)
T ss_pred             CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC----CcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHH
Confidence            34588999999999999999986442 111110    11111000 00011111111111100   11111222222333


Q ss_pred             HHc--cCceEEEEeCCCCchhh---hhc----cCCCCCCCcEEEEeeCChHHHhhcc
Q 046889          253 RIE--KQRVLVILDDLWVQIEL---DRV----GIPYGNDGCKFLLTSRSRAACNQMQ  300 (333)
Q Consensus       253 ~l~--~k~~LlVlDdv~~~~~~---~~l----~~~~~~~g~~vivTTr~~~v~~~~~  300 (333)
                      .+.  ..+.|++||++....+.   ..+    ...+...|+.+|+|||+.++.....
T Consensus       401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~  457 (782)
T PRK00409        401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMY  457 (782)
T ss_pred             HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHh
Confidence            333  47889999999765331   111    1122334889999999998865443

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.87  E-value=0.00034  Score=68.61  Aligned_cols=151  Identities=13%  Similarity=0.163  Sum_probs=86.1

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHHHHHhh---------------------cCCCe
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKVS-IIGICGRGGIGKTTLVKEIQKQAKEK---------------------KMFDE  210 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~~---------------------~~f~~  210 (333)
                      |.....++|.+...+.|...+..++.. .+.++|+.|+||||+|+.+.....-.                     .+|+.
T Consensus        13 P~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~   92 (614)
T PRK14971         13 PSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI   92 (614)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence            344567899999999999999887654 58899999999999999888765311                     11221


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEE
Q 046889          211 VAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKF  286 (333)
Q Consensus       211 ~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~v  286 (333)
                      . .+......... .++.++..+...                -+.+++-++|+|++...  ..++.+.  +.....++.+
T Consensus        93 ~-~ld~~~~~~vd-~Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif  154 (614)
T PRK14971         93 H-ELDAASNNSVD-DIRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF  154 (614)
T ss_pred             E-EecccccCCHH-HHHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence            1 11111111111 111111111110                01235668999988654  2333331  2222335666


Q ss_pred             EEee-CChHHHhhcccce--EecCCCCHHHHHHHHHhh
Q 046889          287 LLTS-RSRAACNQMQAHI--VDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       287 ivTT-r~~~v~~~~~~~~--~~l~~L~~~e~~~lf~~~  321 (333)
                      |++| ....+...+..+.  +.+.++++++....+.+.
T Consensus       155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~i  192 (614)
T PRK14971        155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYV  192 (614)
T ss_pred             EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHH
Confidence            6655 4444443333333  889999998888777654

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=97.86  E-value=1.2e-05  Score=64.27  Aligned_cols=119  Identities=18%  Similarity=0.281  Sum_probs=66.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHh------------------------------hcCCCeEEEEEe--CCCC-C
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKE------------------------------KKMFDEVAMAVV--SQTP-S  221 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------------------------------~~~f~~~~wv~v--~~~~-~  221 (333)
                      .+.  ++-++||||+|||||...+.+...-                              ...|.-.+|-+.  .++. .
T Consensus        24 aGe--~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~  101 (248)
T COG4138          24 AGE--ILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKT  101 (248)
T ss_pred             cce--EEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHH
Confidence            455  8899999999999998877644321                              112333344322  2221 2


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCHHHHHHH------HHH-HHc------cCceEEEEeCCCCchh------hhhccCCCCCC
Q 046889          222 ITKIQDEIAGWLGIKELPDNDELVRASL------LCK-RIE------KQRVLVILDDLWVQIE------LDRVGIPYGND  282 (333)
Q Consensus       222 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~-~l~------~k~~LlVlDdv~~~~~------~~~l~~~~~~~  282 (333)
                      ....+..|...+++.+....+..++...      +.. .|+      -..-|+++|++.+..|      ++.+...+...
T Consensus       102 ~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~  181 (248)
T COG4138         102 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ  181 (248)
T ss_pred             HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC
Confidence            2345566666666643322222211100      000 000      0223999999988754      45555556667


Q ss_pred             CcEEEEeeCChHH
Q 046889          283 GCKFLLTSRSRAA  295 (333)
Q Consensus       283 g~~vivTTr~~~v  295 (333)
                      |-.||+.+|+.+-
T Consensus       182 G~~vims~HDLNh  194 (248)
T COG4138         182 GLAIVMSSHDLNH  194 (248)
T ss_pred             CcEEEEeccchhh
Confidence            8899999998754

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.86  E-value=9.8e-05  Score=67.84  Aligned_cols=130  Identities=16%  Similarity=0.167  Sum_probs=82.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ  257 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k  257 (333)
                      ...+.|+|+.|.|||-|++.+.+.....  ......++++.    +.....++..+..         .....+++..  .
T Consensus       113 ~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~s----e~f~~~~v~a~~~---------~~~~~Fk~~y--~  175 (408)
T COG0593         113 YNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLTS----EDFTNDFVKALRD---------NEMEKFKEKY--S  175 (408)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEeccH----HHHHHHHHHHHHh---------hhHHHHHHhh--c
Confidence            5589999999999999999999987632  33233333332    3334444433322         1234466666  5


Q ss_pred             ceEEEEeCCCCc-------hhhhhccCCCCCCCcEEEEeeCChH---------HHhhcccce-EecCCCCHHHHHHHHHh
Q 046889          258 RVLVILDDLWVQ-------IELDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAHI-VDVRTLTEEESWRSAEG  320 (333)
Q Consensus       258 ~~LlVlDdv~~~-------~~~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~~-~~l~~L~~~e~~~lf~~  320 (333)
                      --++++||++..       ..+..+.-.....|..||+|++..+         +..++.... +.+.+.+.+....++.+
T Consensus       176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k  255 (408)
T COG0593         176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK  255 (408)
T ss_pred             cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence            568999999742       2222222222344668999886542         234454555 89999999999999998


Q ss_pred             hccc
Q 046889          321 KRRV  324 (333)
Q Consensus       321 ~a~~  324 (333)
                      ++-.
T Consensus       256 ka~~  259 (408)
T COG0593         256 KAED  259 (408)
T ss_pred             HHHh
Confidence            7643

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.86  E-value=0.00014  Score=60.80  Aligned_cols=87  Identities=23%  Similarity=0.269  Sum_probs=49.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ-TPSITKIQDEIAGWLGIKE---LPDNDELVRASLLCKR  253 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~  253 (333)
                      ++++.++||.|+||||.+-.+.......  -..+..++... .....+-++..++.++.+-   ....+..+......+.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~   78 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK   78 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence            3589999999999999888887776644  22334444321 1233556777788887641   1222344443333333


Q ss_pred             Hcc-CceEEEEeCC
Q 046889          254 IEK-QRVLVILDDL  266 (333)
Q Consensus       254 l~~-k~~LlVlDdv  266 (333)
                      +.. +.-++++|=+
T Consensus        79 ~~~~~~D~vlIDT~   92 (196)
T PF00448_consen   79 FRKKGYDLVLIDTA   92 (196)
T ss_dssp             HHHTTSSEEEEEE-
T ss_pred             HhhcCCCEEEEecC
Confidence            333 3457777743

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=97.86  E-value=2.3e-05  Score=72.24  Aligned_cols=46  Identities=17%  Similarity=0.403  Sum_probs=37.6

Q ss_pred             ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..+-.+.+.+.++.....+|+  ++++|||+|.||||+++.++.-..+
T Consensus       545 F~Y~p~k~vl~disF~v~pGk--tvAlVG~SGaGKSTimRlLfRffdv  590 (790)
T KOG0056|consen  545 FAYDPGKPVLSDISFTVQPGK--TVALVGPSGAGKSTIMRLLFRFFDV  590 (790)
T ss_pred             EecCCCCceeecceEEecCCc--EEEEECCCCCchhHHHHHHHHHhhc
Confidence            344557778888888877888  9999999999999999999866543

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.86  E-value=4.2e-05  Score=74.99  Aligned_cols=155  Identities=14%  Similarity=0.155  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE---------------EeCCCC---------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA---------------VVSQTP---------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv---------------~v~~~~---------  220 (333)
                      .++.+.....+++  +.+|.|++|+|||||...+.+....+....+.+.+               +|.|+.         
T Consensus        45 iL~~vsg~~~~Ge--l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~  122 (613)
T KOG0061|consen   45 ILKGVSGTAKPGE--LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR  122 (613)
T ss_pred             eeeCcEEEEecCe--EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHH
Confidence            3333333334455  99999999999999999999876543222222222               233321         


Q ss_pred             ------------------CHHHHHHHHHHHhCCCCCCCC-----------CHHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889          221 ------------------SITKIQDEIAGWLGIKELPDN-----------DELVRASLLCKRIEKQRVLVILDDLWVQIE  271 (333)
Q Consensus       221 ------------------~~~~~~~~i~~~l~~~~~~~~-----------~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~  271 (333)
                                        ......++++.++++....+.           ..+..+-.+.-.+-..+.++++|++.+..|
T Consensus       123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLD  202 (613)
T KOG0061|consen  123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLD  202 (613)
T ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcc
Confidence                              123456677778877521111           123445567777778899999999997754


Q ss_pred             hh------hccCCCCCCCcEEEEeeCChHH--Hhhc------c-cce-EecCCCCHHHHHHHHHhhccc
Q 046889          272 LD------RVGIPYGNDGCKFLLTSRSRAA--CNQM------Q-AHI-VDVRTLTEEESWRSAEGKRRV  324 (333)
Q Consensus       272 ~~------~l~~~~~~~g~~vivTTr~~~v--~~~~------~-~~~-~~l~~L~~~e~~~lf~~~a~~  324 (333)
                      -.      .+.......|+.||+|=|.+.-  -..+      + ... |.=   +..++.++|...-+.
T Consensus       203 S~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G---~~~~~~~ff~~~G~~  268 (613)
T KOG0061|consen  203 SFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG---SPRELLEFFSSLGFP  268 (613)
T ss_pred             hhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec---CHHHHHHHHHhCCCC
Confidence            11      1111223338888989888742  1111      1 111 322   347778888877665

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.85  E-value=6.4e-05  Score=80.66  Aligned_cols=39  Identities=26%  Similarity=0.421  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..++.+...+.+|+  +++|+|++|+|||||++.+.+...+
T Consensus       399 ~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p  437 (1466)
T PTZ00265        399 EIYKDLNFTLTEGK--TYAFVGESGCGKSTILKLIERLYDP  437 (1466)
T ss_pred             ceeccceEEEcCCC--EEEEECCCCCCHHHHHHHHHHhccC
Confidence            46788888788888  9999999999999999999877543

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=97.83  E-value=0.00033  Score=69.03  Aligned_cols=159  Identities=13%  Similarity=0.146  Sum_probs=85.1

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      |.....++|.+..+..|..++..++. +.+.++||.|+||||+|+.+...........         ...+-..+.....
T Consensus        14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~---------~~~pC~~C~~~~~   84 (725)
T PRK07133         14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD---------LLEPCQECIENVN   84 (725)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC---------CCCchhHHHHhhc
Confidence            44456788999999999999987653 4678999999999999999986653211100         0000000000000


Q ss_pred             -H---hCCCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCCh-HHHh
Q 046889          232 -W---LGIKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSR-AACN  297 (333)
Q Consensus       232 -~---l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~-~v~~  297 (333)
                       .   +..........++ +..+.+.+     .+++.++|+|++...  ..+..+.  +..+...+.+|++|.+. .+..
T Consensus        85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~  163 (725)
T PRK07133         85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL  163 (725)
T ss_pred             CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence             0   0000000011121 12222222     246679999998643  2333331  11222355555555443 3333


Q ss_pred             hccc--ceEecCCCCHHHHHHHHHhh
Q 046889          298 QMQA--HIVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       298 ~~~~--~~~~l~~L~~~e~~~lf~~~  321 (333)
                      .+..  ..+.+.+++.++....+.+.
T Consensus       164 TI~SRcq~ieF~~L~~eeI~~~L~~i  189 (725)
T PRK07133        164 TILSRVQRFNFRRISEDEIVSRLEFI  189 (725)
T ss_pred             HHHhhceeEEccCCCHHHHHHHHHHH
Confidence            3332  23899999999988777654

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.82  E-value=0.00019  Score=67.28  Aligned_cols=146  Identities=16%  Similarity=0.225  Sum_probs=82.0

Q ss_pred             ccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          157 YNFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ..+.|.+..++.|...+.    .         ....-+.++||+|+|||+||+.+.+...  ..|     +.+...    
T Consensus       183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f-----i~V~~s----  251 (438)
T PTZ00361        183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF-----LRVVGS----  251 (438)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE-----EEEecc----
Confidence            345677777777766553    1         1234688999999999999999998764  222     222111    


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch----------------hhhhccC---CC-CCCC
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI----------------ELDRVGI---PY-GNDG  283 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~---~~-~~~g  283 (333)
                      .+...   .++      .........+.......+++|+||++....                .+..+..   .+ ...+
T Consensus       252 eL~~k---~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~  322 (438)
T PTZ00361        252 ELIQK---YLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD  322 (438)
T ss_pred             hhhhh---hcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence            11110   001      111112222223334577899999874220                0111110   11 1236


Q ss_pred             cEEEEeeCChHHHhhc--c----cceEecCCCCHHHHHHHHHhhc
Q 046889          284 CKFLLTSRSRAACNQM--Q----AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       284 ~~vivTTr~~~v~~~~--~----~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..||+||+..+.....  .    ...|.+...+.++..++|..+.
T Consensus       323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~  367 (438)
T PTZ00361        323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT  367 (438)
T ss_pred             eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence            6889999877654321  1    1228888888999999998665

>PRK13695 putative NTPase; Provisional

Probab=97.82  E-value=1.5e-05  Score=65.41  Aligned_cols=25  Identities=56%  Similarity=0.748  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .++|+|++|+|||||++.+++....
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~   26 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE   26 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999999887654

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.82  E-value=0.00022  Score=59.79  Aligned_cols=119  Identities=10%  Similarity=0.076  Sum_probs=63.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhh----------------cCCCeEEEEEeCC--C----C-CH-HHHHHHHHHHhCC
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEK----------------KMFDEVAMAVVSQ--T----P-SI-TKIQDEIAGWLGI  235 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~----------------~~f~~~~wv~v~~--~----~-~~-~~~~~~i~~~l~~  235 (333)
                      +.+|+|+||+|||||+..++......                ......+.+.+..  .    . .. ......+++. ..
T Consensus        23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~  101 (198)
T cd03276          23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS-NK  101 (198)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc-cc
Confidence            77899999999999999987432110                0111223333221  0    0 01 1233334433 11


Q ss_pred             -C--CCCCCC-HHHHHHHHHHHH----ccCceEEEEeCCCCchh------hhhccCCC-CC--CCcEEEEeeCChHHHhh
Q 046889          236 -K--ELPDND-ELVRASLLCKRI----EKQRVLVILDDLWVQIE------LDRVGIPY-GN--DGCKFLLTSRSRAACNQ  298 (333)
Q Consensus       236 -~--~~~~~~-~~~~~~~l~~~l----~~k~~LlVlDdv~~~~~------~~~l~~~~-~~--~g~~vivTTr~~~v~~~  298 (333)
                       .  .....+ .+.....+...+    ..++-+++||++....+      +..+.... ..  .++.||++||+...+..
T Consensus       102 ~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~  181 (198)
T cd03276         102 AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS  181 (198)
T ss_pred             ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccc
Confidence             0  111112 223344555555    47889999999987644      22222221 22  24579999999887665


Q ss_pred             c
Q 046889          299 M  299 (333)
Q Consensus       299 ~  299 (333)
                      +
T Consensus       182 ~  182 (198)
T cd03276         182 S  182 (198)
T ss_pred             c
Confidence            5

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.82  E-value=0.00032  Score=68.41  Aligned_cols=52  Identities=19%  Similarity=0.365  Sum_probs=43.0

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .|.....++|.+...+.|...+..++. +.+.++|+.|+||||+|+.+.....
T Consensus        11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~   63 (576)
T PRK14965         11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN   63 (576)
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence            344556789999999999999988765 4578999999999999999987753

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=97.81  E-value=0.00017  Score=62.80  Aligned_cols=160  Identities=14%  Similarity=0.115  Sum_probs=92.6

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEE-EEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAM-AVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w-v~v~~~~~~~~~~~~i~  230 (333)
                      .|.....+.|.+.++.-|...+..........+||+|.|||+-++.+.......+.|.+.+. .++|...... +.+.  
T Consensus        31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~--  107 (346)
T KOG0989|consen   31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE--  107 (346)
T ss_pred             CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh--
Confidence            45556678899999999999998877789999999999999999988877654455665543 2222221111 0000  


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHHHc--cCc-eEEEEeCCCCc--hhhhhccC--CCCCCCcEEEEeeCChHH-Hhhcccc
Q 046889          231 GWLGIKELPDNDELVRASLLCKRIE--KQR-VLVILDDLWVQ--IELDRVGI--PYGNDGCKFLLTSRSRAA-CNQMQAH  302 (333)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~l~~~l~--~k~-~LlVlDdv~~~--~~~~~l~~--~~~~~g~~vivTTr~~~v-~~~~~~~  302 (333)
                              ...+...+.........  .++ .++|||+..+.  +.|..+.-  ......+++|+++..... ...+.++
T Consensus       108 --------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR  179 (346)
T KOG0989|consen  108 --------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR  179 (346)
T ss_pred             --------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence                    00011111111110111  133 48999998755  45666532  112336677777766543 2222222


Q ss_pred             e--EecCCCCHHHHHHHHHhhc
Q 046889          303 I--VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       303 ~--~~l~~L~~~e~~~lf~~~a  322 (333)
                      .  +..++|.+++...-++..+
T Consensus       180 C~KfrFk~L~d~~iv~rL~~Ia  201 (346)
T KOG0989|consen  180 CQKFRFKKLKDEDIVDRLEKIA  201 (346)
T ss_pred             HHHhcCCCcchHHHHHHHHHHH
Confidence            2  7888888776665555443

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.81  E-value=2.9e-05  Score=63.92  Aligned_cols=42  Identities=21%  Similarity=0.391  Sum_probs=34.7

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .|+-+.++.+...+..|+  +-++||.+|+|||-+|+.+++-.+
T Consensus        17 qG~vK~VD~v~ltlnEGE--i~GLVGESGSGKSLiAK~Ic~v~k   58 (330)
T COG4170          17 QGWVKAVDRVSMTLNEGE--IRGLVGESGSGKSLIAKAICGVNK   58 (330)
T ss_pred             CCceEeeeeeeeeeccce--eeeeeccCCCchhHHHHHHhcccc
Confidence            455566677777777788  899999999999999999997765

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.81  E-value=0.00021  Score=63.36  Aligned_cols=86  Identities=20%  Similarity=0.241  Sum_probs=48.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhh-cCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHc
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEK-KMFDEVAMAVVSQ-TPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIE  255 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  255 (333)
                      ..+++|+|++|+||||++..+....... +.+ .+..+.... .......+......++.+-....+...+...+. .+.
T Consensus       194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~  271 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLR  271 (282)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hcc
Confidence            3499999999999999999998776543 222 333443322 112233444455555654222334444433333 333


Q ss_pred             cCceEEEEeCC
Q 046889          256 KQRVLVILDDL  266 (333)
Q Consensus       256 ~k~~LlVlDdv  266 (333)
                       ..-++++|.+
T Consensus       272 -~~d~vliDt~  281 (282)
T TIGR03499       272 -DKDLILIDTA  281 (282)
T ss_pred             -CCCEEEEeCC
Confidence             3468888854

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.79  E-value=0.00026  Score=64.31  Aligned_cols=99  Identities=16%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCHH
Q 046889          168 DIMEAMKD-EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE-VAMAVVSQTP-SITKIQDEIAGWLGIKELPDNDEL  244 (333)
Q Consensus       168 ~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~  244 (333)
                      .++..+.+ +.-..+.|+|+.|+|||||++.+.+....+ +-+. .+|+.+.+.. ++.++.+.+...+.....+.....
T Consensus       122 RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~  200 (380)
T PRK12608        122 RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDE  200 (380)
T ss_pred             hhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHH
Confidence            35555543 333378999999999999999998877543 2233 4677787654 567788888776665322222211


Q ss_pred             -----HHHHHHHHHH--ccCceEEEEeCCC
Q 046889          245 -----VRASLLCKRI--EKQRVLVILDDLW  267 (333)
Q Consensus       245 -----~~~~~l~~~l--~~k~~LlVlDdv~  267 (333)
                           .....+.+.+  .+++.+||+|++.
T Consensus       201 ~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt  230 (380)
T PRK12608        201 HIRVAELVLERAKRLVEQGKDVVILLDSLT  230 (380)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence                 1222344444  3588999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	3e-24
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	3e-20
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-11
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score =  103 bits (258), Expect = 2e-24
 Identities = 58/344 (16%), Positives = 116/344 (33%), Gaps = 77/344 (22%)

Query: 1   MAAETVASVTQPITEKIVDVLFNATVRQFGYLCKYKHYIEALR-----TEAKKLTDTRND 55
           M  ET     Q   + I+ V  +A V  F   CK     +  +      E   +  +++ 
Sbjct: 7   MDFET--GEHQYQYKDILSVFEDAFVDNFD--CK--DVQDMPKSILSKEEIDHIIMSKDA 60

Query: 56  LQAE---IDAATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLCVDLKS 112
           +              E +   VQ++   V+E++    KFL   +K               
Sbjct: 61  VSGTLRLFWTLLSKQEEM---VQKF---VEEVLRINYKFLMSPIKTE-------QRQPSM 107

Query: 113 RYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTMKDIMEA 172
             ++  E  +++   + + A  N    VSR  P    + L +                  
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYN----VSRLQP---YLKLRQALLE-------------- 146

Query: 173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAK-EKKMFDEV---AMAVVSQTPSITKIQ-- 226
           ++  K   + I G  G GKT +  ++    K + KM  ++    +   +   ++ ++   
Sbjct: 147 LRPAK--NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 227 -------DEIAGWLGIKELPDNDELVRASL--LCKRIEKQRVLVILDDLWVQIELDRVGI 277
                  +  +       +      ++A L  L K    +  L++L ++      +   +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 278 PYGNDGCKFLLTSRSRAACNQMQA----HIVDV---RTLTEEES 314
                 CK LLT+R +   + + A    HI       TLT +E 
Sbjct: 265 -----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 9e-09
 Identities = 48/322 (14%), Positives = 83/322 (25%), Gaps = 112/322 (34%)

Query: 19  DVLFNATVRQFGYLCK------------------YKHYI-----------EALRTEAKKL 49
           +V        F   CK                    H             E      K L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 50  TDTRNDLQAEIDAATRN-------GEAIKDEVQRW-------PDKVDEIIPTAEKFLEDE 95
                DL  E    T N        E+I+D +  W        DK+  II ++   LE  
Sbjct: 312 DCRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 96  VKVNKTCLGGLCVDLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAP-PPAIISLSE 154
                        + +  +          L++        F          P  ++SL  
Sbjct: 370 -------------EYRKMFDR--------LSV--------FPPSA----HIPTILLSL-- 394

Query: 155 GFYNFKSRESTMKDIMEAM-------KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM 207
             +    +   M  ++  +       K  K S I I     I     VK   + A  + +
Sbjct: 395 -IWFDVIKSDVM-VVVNKLHKYSLVEKQPKESTISI---PSIYLELKVKLENEYALHRSI 449

Query: 208 FDEVAMAVVSQTPSITKIQDE--IAGWLG----IKELPDNDELVRASLLCKRIEKQRVLV 261
            D   +     +  +     +      +G      E P+   L R             +V
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-------------MV 496

Query: 262 ILDDLWVQIELDRVGIPYGNDG 283
            LD  +++ ++      +   G
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASG 518

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  102 bits (255), Expect = 3e-24
 Identities = 33/290 (11%), Positives = 85/290 (29%), Gaps = 23/290 (7%)

Query: 45  EAKKLTDTR-NDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCL 103
             + + D    D    ++      E   + + +   +++ I      +     ++     
Sbjct: 14  HTRLIHDFEPRDALTYLEGKNIFTEDHSELISKMSTRLERIANFLRIYRRQASELGPLID 73

Query: 104 GGLCVDLKSRYKLSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLS----EGFYNF 159
                +         +  +  +    L+         SR      ++  +       Y  
Sbjct: 74  FFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIR 133

Query: 160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE--KKMFDEVAMAVVS 217
           +     +   ++ M D     + + GR G GK+ +  +   ++ +     +D +     S
Sbjct: 134 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDS 193

Query: 218 QTPS------ITKIQDEIAGWLGIKELPDNDELVRASLLCKR----IEKQRVLVILDDLW 267
            T         T I   +     +   P  + +    L        I++   L + DD+ 
Sbjct: 194 GTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV 253

Query: 268 VQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQA--HIVDVRTLTEEESW 315
                +           + L+T+R     N        ++V +L  +E +
Sbjct: 254 ----QEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECY 299

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 90.3 bits (224), Expect = 3e-20
 Identities = 46/284 (16%), Positives = 94/284 (33%), Gaps = 28/284 (9%)

Query: 48  KLTDTRNDLQAEIDAATRNGEAIKDEVQRWPDKVDEIIPTAEKFLEDEVKVNKTCLGGLC 107
           K +   + + ++        E +++E  +   +   +I    K      K N + +    
Sbjct: 21  KTSYIMDHMISDGFLTISEEEKVRNEPTQQ-QRAAMLIKMILK------KDNDSYVSFYN 73

Query: 108 VDLKSRYK-LSREAEEKILAISALIAAGNFGKDVSRPAPPPAIISLSEGFYNFKSRESTM 166
             L   YK L+    + I  +S+     +     S          + +    F +R+  +
Sbjct: 74  ALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLV 133

Query: 167 KDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEI-QKQAKEKKMFDEVAMAV-VSQTPSI 222
             I + +     +   + I G  G GK+ L  E  +  +  +  F      V V +    
Sbjct: 134 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS 193

Query: 223 TKIQD--EIAGWLGIKELPDNDELVRASLLCKRIEK------QRVLVILDDLWVQIELDR 274
             +     +   L   E       +       R+         R L+ILDD+W    L  
Sbjct: 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK- 252

Query: 275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV---RTLTEEESW 315
                 +  C+ LLT+R ++  + +      V    +L +E+  
Sbjct: 253 ----AFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGL 292

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 24/174 (13%)

Query: 158 NFKSRESTMKDIMEAM--KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV 215
            F +R+  +  I + +   + +   + I G  G GK+ L  E  +     +     +  V
Sbjct: 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLE--GCFSGGV 182

Query: 216 V------SQTPSITKIQDEIAGWLG-----IKELPDNDELVRASLLCKRIEKQ-RVLVIL 263
                       +      +   L       + LP N E  +  L    + K  R L+IL
Sbjct: 183 HWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLIL 242

Query: 264 DDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVRT---LTEEES 314
           DD+W     D   +   ++ C+ LLT+R ++  + +      V     L  E+ 
Sbjct: 243 DDVW-----DPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKG 291

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 158 NFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS 217
             + R   +   + A+K     ++GI G    GKTTL  ++ +  +E      +++ V  
Sbjct: 2   ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE----QGISVCVFH 57

Query: 218 Q 218
            
Sbjct: 58  M 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.94
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.87
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.85
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.84
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.46
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.41
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.4
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.34
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.33
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.32
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.29
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.18
2fna_A	357	Conserved hypothetical protein; structural genomic	99.16
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.09
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.93
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.93
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.92
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.91
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.91
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.9
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.9
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.9
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.9
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.88
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.86
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.85
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.85
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.84
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.83
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.83
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.82
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.82
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.82
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.82
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.81
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.8
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.79
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.78
1g6h_A	257	High-affinity branched-chain amino acid transport	98.78
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.77
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.77
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.76
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.76
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.76
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.75
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.71
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.71
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.68
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.67
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.67
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.67
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.67
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.65
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.65
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.64
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.63
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.63
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.61
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.61
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.6
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.59
3pvs_A	447	Replication-associated recombination protein A; ma	98.59
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.58
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.57
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.55
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.55
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.52
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.52
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.52
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.51
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.51
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.48
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.47
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.46
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.43
3bos_A	242	Putative DNA replication factor; P-loop containing	98.42
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.42
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.42
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.41
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.4
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.39
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.37
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	98.37
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.36
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.35
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.34
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.33
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.33
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.32
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.31
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.29
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.29
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.28
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.28
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.23
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.21
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.21
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.2
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.18
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.17
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.17
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.17
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.16
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.16
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.16
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.15
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.14
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.13
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.13
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.12
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.12
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.1
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.1
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.1
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.09
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.08
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.08
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.07
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.06
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.04
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.03
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.03
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.0
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.97
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.96
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.96
3co5_A	143	Putative two-component system transcriptional RES	97.95
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.95
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.94
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.92
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.9
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.88
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.88
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.87
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.87
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.86
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.86
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.85
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.85
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.82
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.81
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.79
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.79
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.78
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.77
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.75
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.73
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.71
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.71
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.71
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.7
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.69
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.69
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.66
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.66
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.66
2qgz_A	308	Helicase loader, putative primosome component; str	97.65
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.65
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.63
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.62
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.62
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.6
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.59
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.59
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.55
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.54
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.53
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.52
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.51
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.47
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.47
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.45
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.44
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.43
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.43
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.43
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.39
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.38
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.37
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.36
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.33
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.31
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.3
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.27
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.26
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.25
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.24
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.24
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.23
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.23
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.22
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.22
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.2
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.2
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.2
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.2
2xxa_A	433	Signal recognition particle protein; protein trans	97.19
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.17
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.16
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.15
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.13
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.13
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.11
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.11
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.1
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.08
3io5_A	333	Recombination and repair protein; storage dimer, i	97.07
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.07
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.07
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.07
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.07
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.06
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.06
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.05
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.03
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.03
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.02
3ice_A	422	Transcription termination factor RHO; transcriptio	97.02
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.02
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.0
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.0
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.99
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.99
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.99
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.99
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.99
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.98
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.97
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.96
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.94
2og2_A	359	Putative signal recognition particle receptor; nuc	96.93
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.93
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.91
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.89
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.88
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.87
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.87
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.87
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.86
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.84
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.83
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.82
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.81
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.79
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.77
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.77
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.77
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.75
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.75
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.72
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.71
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.69
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.68
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.66
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.65
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.65
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.64
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.63
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.63
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.61
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.61
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.6
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.6
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.58
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.58
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.57
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.57
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.56
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.56
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.55
1via_A	175	Shikimate kinase; structural genomics, transferase	96.55
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.54
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.51
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.51
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	96.48
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.48
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.46
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.45
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.41
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.41
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.41
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.41
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.4
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.39
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.39
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.39
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.38
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.38
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.37
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.37
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.37
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.36
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.36
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.34
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.34
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.32
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.31
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.3
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.3
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.29
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.29
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.29
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.27
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.27
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.25
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.25
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.25
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.24
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.24
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.2
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.19
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.18
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.17
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.17
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.17
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.17
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.16
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.15
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.12
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.11
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.1
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.1
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	96.09
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.08
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.08
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.03
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.02
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.01
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.01
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.97
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.97
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.96
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.96
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.95
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.95
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.92
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.91
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.9
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.88
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.87
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.8
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.79
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.79
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.78
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.77
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.75
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.74
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.74
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.73
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.72
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.71
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.71
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.7
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.69
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.69
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.68
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.68
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.67
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	95.61
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.61
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.59
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.58
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.57
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.51
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.5
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.5
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	95.49
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.45
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.45
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.44
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	95.44
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.44
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.44
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.4
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.39
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.38
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.37
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.34
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.33
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.32
3fwy_A	314	Light-independent protochlorophyllide reductase I	95.32
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.31
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.31
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.3
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.26
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.23
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.22
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.21
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.19
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.18
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.17
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	95.16
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.16
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.15
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.15
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.13
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.13
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.12
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.12
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.12
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.08
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.07
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.06
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.06
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.06
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.06
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.05
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.04
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.03
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.03
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	95.03
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.01
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.01
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.0
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.99
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.99
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.97
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	94.96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.96
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.93
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.92
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.92
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.87
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.87
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.86
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.86
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.86
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.85
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.84
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	94.84
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.84
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.83
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.81
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.81
3end_A	307	Light-independent protochlorophyllide reductase ir	94.8
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.78
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	94.77
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.77
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.75
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.74
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.74
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.71
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.71
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.71
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.71
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	94.71
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.7
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.7
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.7
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.7
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.66
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.66
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.66
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.65
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	94.64
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.64
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.63
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.61
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.6
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.59
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	94.59
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.57
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.56
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.53
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.52
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.51
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.51
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.51
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.49
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.49
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.48
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	94.46
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.46
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.45
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.42
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	94.4
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.4
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.39
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	94.38
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.37
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.34
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.34
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.33
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.28
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.28
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	94.22
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	94.2
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.18
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.17
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.15
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.15
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.14
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.12
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.11
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.05

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.94  E-value=3.6e-26  Score=220.07  Aligned_cols=163  Identities=17%  Similarity=0.225  Sum_probs=137.3

Q ss_pred             cchHHHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHH--HHHhhcCCCeEEEEEeCCCC--CHHHHHHHHHHH
Q 046889          160 KSRESTMKDIMEAMKDE---KVSIIGICGRGGIGKTTLVKEIQK--QAKEKKMFDEVAMAVVSQTP--SITKIQDEIAGW  232 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~v~~--~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~  232 (333)
                      +||+.+++.|..+|..+   +.++|+|+||||+||||||+.+|+  +.+...+|+.++|+++++.+  ++..++..|+.+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~  210 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM  210 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            59999999999999654   578999999999999999999998  56677899999999999885  788999999999


Q ss_pred             hCCCCC-------CCCCHHHHHHHHHHHHccC-ceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhcc-c-c
Q 046889          233 LGIKEL-------PDNDELVRASLLCKRIEKQ-RVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQ-A-H  302 (333)
Q Consensus       233 l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~-~-~  302 (333)
                      ++....       ...+...+...+.+.|.++ ||||||||+|+..++ .+  + ...||+||||||+..++..++ . .
T Consensus       211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~--~-~~~gs~ilvTTR~~~v~~~~~~~~~  286 (549)
T 2a5y_B          211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW--A-QELRLRCLVTTRDVEISNAASQTCE  286 (549)
T ss_dssp             HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH--H-HHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred             HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc--c-ccCCCEEEEEcCCHHHHHHcCCCCe
Confidence            986421       2234566788999999996 999999999998765 22  1 126999999999999998875 3 2


Q ss_pred             eEecCCCCHHHHHHHHHhhcccCC
Q 046889          303 IVDVRTLTEEESWRSAEGKRRVCL  326 (333)
Q Consensus       303 ~~~l~~L~~~e~~~lf~~~a~~~~  326 (333)
                      .|.|++|+++++|+||.+++|+..
T Consensus       287 ~~~l~~L~~~ea~~Lf~~~a~~~~  310 (549)
T 2a5y_B          287 FIEVTSLEIDECYDFLEAYGMPMP  310 (549)
T ss_dssp             EEECCCCCHHHHHHHHHHTSCCCC
T ss_pred             EEECCCCCHHHHHHHHHHHhcCCC
Confidence            399999999999999999998764

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.87  E-value=3.3e-22  Score=198.37  Aligned_cols=159  Identities=18%  Similarity=0.112  Sum_probs=125.9

Q ss_pred             ccchHHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe-EEEEEeCCCCCHHHHHHHHHHHhCCC
Q 046889          159 FKSRESTMKDIMEAMKD-EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE-VAMAVVSQTPSITKIQDEIAGWLGIK  236 (333)
Q Consensus       159 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~l~~~  236 (333)
                      .+||+.+++.|..+|.. +..++|+|+||+|+||||||+.++++.+...+|+. ++|+++++.++...++..++..++..
T Consensus       130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i  209 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI  209 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence            49999999999999976 45679999999999999999999988777788986 89999999988888877777653211


Q ss_pred             -----CCCC--C----CHHHHHHHHHHHH---ccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhcccc
Q 046889          237 -----ELPD--N----DELVRASLLCKRI---EKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAH  302 (333)
Q Consensus       237 -----~~~~--~----~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~  302 (333)
                           ....  .    +.+.....+.+.|   .++|+||||||+|+...|..+.     .||+||||||++.++..+...
T Consensus       210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-----pGSRILVTTRd~~Va~~l~g~  284 (1221)
T 1vt4_I          210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSCKILLTTRFKQVTDFLSAA  284 (1221)
T ss_dssp             CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-----SSCCEEEECSCSHHHHHHHHH
T ss_pred             CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-----CCeEEEEeccChHHHHhcCCC
Confidence                 0011  1    1234455666665   5799999999999988887752     589999999999998655433


Q ss_pred             -eEecC------CCCHHHHHHHHHhhc
Q 046889          303 -IVDVR------TLTEEESWRSAEGKR  322 (333)
Q Consensus       303 -~~~l~------~L~~~e~~~lf~~~a  322 (333)
                       .+.++      +|+++|+|+||+++.
T Consensus       285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~  311 (1221)
T 1vt4_I          285 TTTHISLDHHSMTLTPDEVKSLLLKYL  311 (1221)
T ss_dssp             SSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred             eEEEecCccccCCcCHHHHHHHHHHHc
Confidence             36666      899999999999983

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.85  E-value=6.7e-21  Score=199.49  Aligned_cols=172  Identities=19%  Similarity=0.250  Sum_probs=134.7

Q ss_pred             cccccccccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHHh-hcCC-CeEEEEEeCCCCC--HHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAKE-KKMF-DEVAMAVVSQTPS--ITKI  225 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~f-~~~~wv~v~~~~~--~~~~  225 (333)
                      .|.....|+||+.+++.|...|.  +++.++|+|+||||+||||||+.++++.+. ..+| +.+.|+.+++..+  ....
T Consensus       119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  198 (1249)
T 3sfz_A          119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK  198 (1249)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred             CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence            45556779999999999999995  356789999999999999999999987643 3444 5677999988654  3344


Q ss_pred             HHHHHHHhCCCC----CCCCCHHHHHHHHHHHHccC--ceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhc
Q 046889          226 QDEIAGWLGIKE----LPDNDELVRASLLCKRIEKQ--RVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQM  299 (333)
Q Consensus       226 ~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~  299 (333)
                      +..++..++...    ....+...+...+...+.++  |+||||||+|+..+|..+     ..||+||||||++.++..+
T Consensus       199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-----~~~~~ilvTtR~~~~~~~~  273 (1249)
T 3sfz_A          199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-----DNQCQILLTTRDKSVTDSV  273 (1249)
T ss_dssp             HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-----CSSCEEEEEESSTTTTTTC
T ss_pred             HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-----cCCCEEEEEcCCHHHHHhh
Confidence            666777776532    22345777888899999887  999999999998887775     3589999999999998543


Q ss_pred             -ccce-EecCC-CCHHHHHHHHHhhcccCCCc
Q 046889          300 -QAHI-VDVRT-LTEEESWRSAEGKRRVCLER  328 (333)
Q Consensus       300 -~~~~-~~l~~-L~~~e~~~lf~~~a~~~~~~  328 (333)
                       .... +.+.+ |+++|+++||...++...++
T Consensus       274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~  305 (1249)
T 3sfz_A          274 MGPKHVVPVESGLGREKGLEILSLFVNMKKED  305 (1249)
T ss_dssp             CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT
T ss_pred             cCCceEEEecCCCCHHHHHHHHHHhhCCChhh
Confidence             3333 88986 99999999999988655443

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.84  E-value=3.2e-20  Score=180.37  Aligned_cols=167  Identities=19%  Similarity=0.229  Sum_probs=128.0

Q ss_pred             ccccccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHHHh-hcCCC-eEEEEEeCCCCCHHHHHH-
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQAKE-KKMFD-EVAMAVVSQTPSITKIQD-  227 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~f~-~~~wv~v~~~~~~~~~~~-  227 (333)
                      |.....|+||+.+++.|...+..  ++.++|+|+||+|+||||||..++++... ..+|. .+.|+++++.. ...++. 
T Consensus       120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~  198 (591)
T 1z6t_A          120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMK  198 (591)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHH
T ss_pred             CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHH
Confidence            44456799999999999999863  45789999999999999999999987654 56784 78999998763 333333 


Q ss_pred             --HHHHHhCCC----CCCCCCHHHHHHHHHHHHcc--CceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhc
Q 046889          228 --EIAGWLGIK----ELPDNDELVRASLLCKRIEK--QRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQM  299 (333)
Q Consensus       228 --~i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~  299 (333)
                        .++..++..    .....+.......+...+.+  +++||||||+|+...+..+     ..|++||||||+..++..+
T Consensus       199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-----~~~~~ilvTsR~~~~~~~~  273 (591)
T 1z6t_A          199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDSV  273 (591)
T ss_dssp             HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-----CSSCEEEEEESCGGGGTTC
T ss_pred             HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-----cCCCeEEEECCCcHHHHhc
Confidence              334455531    22344567777888888877  7899999999988766654     3489999999999988765


Q ss_pred             ccceEec---CCCCHHHHHHHHHhhcccC
Q 046889          300 QAHIVDV---RTLTEEESWRSAEGKRRVC  325 (333)
Q Consensus       300 ~~~~~~l---~~L~~~e~~~lf~~~a~~~  325 (333)
                      ....+.+   ++|+++|+++||.+.++..
T Consensus       274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~~  302 (591)
T 1z6t_A          274 MGPKYVVPVESSLGKEKGLEILSLFVNMK  302 (591)
T ss_dssp             CSCEEEEECCSSCCHHHHHHHHHHHHTSC
T ss_pred             CCCceEeecCCCCCHHHHHHHHHHHhCCC
Confidence            5444444   5899999999999998753

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.46  E-value=1.1e-13  Score=104.18  Aligned_cols=74  Identities=18%  Similarity=0.228  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccchhHHhhhHHHHHHHHHHHHHHH
Q 046889           14 TEKIVDVLFNATVRQFGYLCKYKHYIEALRTEAKKLTDTRNDLQAEIDAATRNG-EAIKDEVQRWPDKVDEIIPTAEKFL   92 (333)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~l~~a~~~~-~~~~~~~~~wl~~vr~~a~~~ed~l   92 (333)
                      ++.+.++|.+.+.+++.++.++++++++|++||+.|+++|.       +++.+. ...++.++.|+.+||+++||+||+|
T Consensus         3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~-------da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~i   75 (115)
T 3qfl_A            3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALI-------KIGEVPREQLDSQDKLWADEVRELSYVIEDVV   75 (115)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-------HHHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666778899999999999999999999866554       455542 2468999999999999999999999


Q ss_pred             hh
Q 046889           93 ED   94 (333)
Q Consensus        93 d~   94 (333)
                      |+
T Consensus        76 D~   77 (115)
T 3qfl_A           76 DK   77 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            96

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.41  E-value=4.3e-12  Score=117.37  Aligned_cols=165  Identities=20%  Similarity=0.198  Sum_probs=112.8

Q ss_pred             ccccchHHHHHHHHHHh-hc------CCceEEEE--EcCCCCcHHHHHHHHHHHHHhh---cCCC-eEEEEEeCCCCCHH
Q 046889          157 YNFKSRESTMKDIMEAM-KD------EKVSIIGI--CGRGGIGKTTLVKEIQKQAKEK---KMFD-EVAMAVVSQTPSIT  223 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l-~~------~~~~vi~I--~G~~G~GKTtLa~~v~~~~~~~---~~f~-~~~wv~v~~~~~~~  223 (333)
                      ..++||+.+++.|...+ ..      +....+.|  +|++|+|||||++.+++.....   ..+. ..+|+.+.+..+..
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY  101 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence            56999999999998887 41      24456777  9999999999999999876532   1222 34577766777888


Q ss_pred             HHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHHc--cCceEEEEeCCCCch--------hhhhcc---CCCC--C--CCcE
Q 046889          224 KIQDEIAGWLGIKEL-PDNDELVRASLLCKRIE--KQRVLVILDDLWVQI--------ELDRVG---IPYG--N--DGCK  285 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~l~---~~~~--~--~g~~  285 (333)
                      .++..++..++.... ...+.......+.+.+.  +++++|||||++...        .+..+.   ....  .  ....
T Consensus       102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~  181 (412)
T 1w5s_A          102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG  181 (412)
T ss_dssp             HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred             HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence            899999999876422 22345556666666665  578999999997632        222221   1111  2  3455


Q ss_pred             EEEeeCChHHHh-----------hcccceEecCCCCHHHHHHHHHhhc
Q 046889          286 FLLTSRSRAACN-----------QMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       286 vivTTr~~~v~~-----------~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      +|+||+...+..           .+... +.+.+|+.++.+++|.+++
T Consensus       182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~-i~l~~l~~~e~~~ll~~~~  228 (412)
T 1w5s_A          182 FLLVASDVRALSYMREKIPQVESQIGFK-LHLPAYKSRELYTILEQRA  228 (412)
T ss_dssp             EEEEEEETHHHHHHHHHCHHHHTTCSEE-EECCCCCHHHHHHHHHHHH
T ss_pred             EEEEeccccHHHHHhhhcchhhhhcCCe-eeeCCCCHHHHHHHHHHHH
Confidence            788887665322           12222 8999999999999997653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.40  E-value=1.8e-12  Score=118.57  Aligned_cols=166  Identities=16%  Similarity=0.154  Sum_probs=113.7

Q ss_pred             ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-CCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-FDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      ..++||+.+++.+..++..    +....+.|+|++|+|||||++.+++....... -...+|+......+...++..++.
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~   99 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE   99 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999998863    34568999999999999999999988754321 234567766665666777888877


Q ss_pred             HhCCCC-CCCCCHHHHHHHHHHHHcc--CceEEEEeCCCCch------hhhhccCCC---CCCCcEEEEeeCChHHHh--
Q 046889          232 WLGIKE-LPDNDELVRASLLCKRIEK--QRVLVILDDLWVQI------ELDRVGIPY---GNDGCKFLLTSRSRAACN--  297 (333)
Q Consensus       232 ~l~~~~-~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~------~~~~l~~~~---~~~g~~vivTTr~~~v~~--  297 (333)
                      .++... ....+.......+.+.+..  ++.+|||||++...      .+..+....   ...+..+|+||+......  
T Consensus       100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~  179 (386)
T 2qby_A          100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL  179 (386)
T ss_dssp             TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred             HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence            776532 1223455556666666654  48999999997532      122221111   233667888998765322  


Q ss_pred             ------hcccceEecCCCCHHHHHHHHHhhc
Q 046889          298 ------QMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       298 ------~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                            .+....+.+++++.++..+++.+.+
T Consensus       180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~  210 (386)
T 2qby_A          180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRA  210 (386)
T ss_dssp             TTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred             CHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence                  2222359999999999999999864

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.34  E-value=3e-11  Score=110.59  Aligned_cols=163  Identities=16%  Similarity=0.081  Sum_probs=114.9

Q ss_pred             ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----C--CCeEEEEEeCCCC-CHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----M--FDEVAMAVVSQTP-SITKI  225 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~--f~~~~wv~v~~~~-~~~~~  225 (333)
                      ..++||+.+++.+..++..    +..+.+.|+|++|+|||||++.+++......    .  ....+|+...... +...+
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   99 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV   99 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence            6799999999998877753    3456899999999999999999998764321    1  2355677766656 77888


Q ss_pred             HHHHHHHh-CCC-CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-------hhhccCCCCCCCcEEEEeeCChHH-
Q 046889          226 QDEIAGWL-GIK-ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-------LDRVGIPYGNDGCKFLLTSRSRAA-  295 (333)
Q Consensus       226 ~~~i~~~l-~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~g~~vivTTr~~~v-  295 (333)
                      +..++..+ +.. .....+.......+...+..++.+|||||++....       +..+....  .+..+|+||+.... 
T Consensus       100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~--~~~~iI~~t~~~~~~  177 (384)
T 2qby_B          100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD--ANISVIMISNDINVR  177 (384)
T ss_dssp             HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS--SCEEEEEECSSTTTT
T ss_pred             HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC--cceEEEEEECCCchH
Confidence            88888877 332 11223345667778888887777999999975421       22221111  57788999987632 


Q ss_pred             -------HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889          296 -------CNQMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 -------~~~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                             ...++. .+.+++++.++..++|.+++
T Consensus       178 ~~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~  210 (384)
T 2qby_B          178 DYMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYA  210 (384)
T ss_dssp             TTSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHH
T ss_pred             hhhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHH
Confidence                   222222 69999999999999999874

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.33  E-value=5.7e-11  Score=108.85  Aligned_cols=166  Identities=17%  Similarity=0.174  Sum_probs=116.1

Q ss_pred             ccccchHHHHHHHHHHhhc----CCce--EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD----EKVS--IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      ..++||+.+++.+..++..    +...  .+.|+|++|+|||||++.+.+....... ...+++..+...+...+...++
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~   95 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA   95 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence            5689999999999888864    2333  8999999999999999999988753211 2455666667777788899999


Q ss_pred             HHhCCCCC-CCCCHHHHHHHHHHHHc--cCceEEEEeCCCCc--hhhhhc---cCCCCC---CCcEEEEeeCChHHHhh-
Q 046889          231 GWLGIKEL-PDNDELVRASLLCKRIE--KQRVLVILDDLWVQ--IELDRV---GIPYGN---DGCKFLLTSRSRAACNQ-  298 (333)
Q Consensus       231 ~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~l---~~~~~~---~g~~vivTTr~~~v~~~-  298 (333)
                      ..++.... ...+.......+...+.  +++.+|+|||++..  ..+..+   ......   .+..||++|++...... 
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l  175 (389)
T 1fnn_A           96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL  175 (389)
T ss_dssp             HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred             HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence            98876421 22345566666666665  46789999999764  222222   111112   46778889888754322 


Q ss_pred             -------cccceEecCCCCHHHHHHHHHhhcc
Q 046889          299 -------MQAHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       299 -------~~~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                             +....+.+.+++.++..+++.+.+.
T Consensus       176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~  207 (389)
T 1fnn_A          176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK  207 (389)
T ss_dssp             CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred             CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence                   3333599999999999999988753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.32  E-value=7e-11  Score=108.05  Aligned_cols=166  Identities=16%  Similarity=0.163  Sum_probs=115.3

Q ss_pred             ccccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---C-CCeEEEEEeCCCCCHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---M-FDEVAMAVVSQTPSITKIQDE  228 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~-f~~~~wv~v~~~~~~~~~~~~  228 (333)
                      ..++||+.+++.+..++..    +....+.|+||+|+|||||++.+++......   . -...+|+......+...++..
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   98 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA   98 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence            5789999999999998843    4456899999999999999999998764321   1 124567777777788888999


Q ss_pred             HHHHhCCCC-CCCCCHHHHHHHHHHHHc--cCceEEEEeCCCCchh-------hhhcc-CCC--C-CCCcEEEEeeCChH
Q 046889          229 IAGWLGIKE-LPDNDELVRASLLCKRIE--KQRVLVILDDLWVQIE-------LDRVG-IPY--G-NDGCKFLLTSRSRA  294 (333)
Q Consensus       229 i~~~l~~~~-~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~-------~~~l~-~~~--~-~~g~~vivTTr~~~  294 (333)
                      ++..++... ....+.......+...+.  +++++|+|||++....       +..+. .+.  . ..+..+|+||+...
T Consensus        99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~  178 (387)
T 2v1u_A           99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG  178 (387)
T ss_dssp             HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred             HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence            999997642 223345666677777774  3578999999975421       11111 111  1 34667888887663


Q ss_pred             --------HHhhcccceEecCCCCHHHHHHHHHhhc
Q 046889          295 --------ACNQMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       295 --------v~~~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                              +...+....+.+.+++.++..+++.+.+
T Consensus       179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~  214 (387)
T 2v1u_A          179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA  214 (387)
T ss_dssp             TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred             hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence                    2334444458999999999999999875

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.29  E-value=2.5e-11  Score=109.47  Aligned_cols=157  Identities=14%  Similarity=0.102  Sum_probs=103.6

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCC------CHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTP------SITKIQDEI  229 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~------~~~~~~~~i  229 (333)
                      ...|+||+.+++.|...+..+  +++.|+|+.|+|||||++.+.+..      . .+|+.+....      +...+++.+
T Consensus        11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l   81 (350)
T 2qen_A           11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKEL   81 (350)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred             hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHH
Confidence            367999999999999998776  499999999999999999998764      1 5566654322      445566666


Q ss_pred             HHHhCC-----------------C-CCCCCCHHHHHHHHHHHHcc-CceEEEEeCCCCchh---------hhhccCCC-C
Q 046889          230 AGWLGI-----------------K-ELPDNDELVRASLLCKRIEK-QRVLVILDDLWVQIE---------LDRVGIPY-G  280 (333)
Q Consensus       230 ~~~l~~-----------------~-~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~l~~~~-~  280 (333)
                      ...+..                 . ........+....+.+.... ++++|||||++....         +..+.... .
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~  161 (350)
T 2qen_A           82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS  161 (350)
T ss_dssp             HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh
Confidence            655432                 0 00113445555556555543 489999999976432         11111100 1


Q ss_pred             CCCcEEEEeeCChHHHhh----------cc---cceEecCCCCHHHHHHHHHhh
Q 046889          281 NDGCKFLLTSRSRAACNQ----------MQ---AHIVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       281 ~~g~~vivTTr~~~v~~~----------~~---~~~~~l~~L~~~e~~~lf~~~  321 (333)
                      ..+..+|+|++.......          +.   ...+.+.+|+.+|+.+++.+.
T Consensus       162 ~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~  215 (350)
T 2qen_A          162 LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRG  215 (350)
T ss_dssp             CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHH
Confidence            136789999887653221          11   124899999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.18  E-value=8.3e-10  Score=92.61  Aligned_cols=152  Identities=10%  Similarity=0.132  Sum_probs=93.5

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLG  234 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~  234 (333)
                      ....++|++..++.+..++..+....+.|+|+.|+|||+|++.+.........-.....+..+.......+...+.....
T Consensus        15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (226)
T 2chg_A           15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR   94 (226)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred             CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhc
Confidence            44678999999999999998776556999999999999999999887643211112223333333332222211111111


Q ss_pred             CCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-----HhhcccceEe
Q 046889          235 IKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-----CNQMQAHIVD  305 (333)
Q Consensus       235 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-----~~~~~~~~~~  305 (333)
                      ...               .-..++.+|++||++..  .....+.  +.....++.+|+||+....     ..++  ..+.
T Consensus        95 ~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~--~~i~  157 (226)
T 2chg_A           95 TAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC--AVFR  157 (226)
T ss_dssp             SCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS--EEEE
T ss_pred             ccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC--ceee
Confidence            100               00246789999999754  2222221  1112346778888876542     2222  2489


Q ss_pred             cCCCCHHHHHHHHHhhcc
Q 046889          306 VRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       306 l~~L~~~e~~~lf~~~a~  323 (333)
                      +.+++.++..+++.+.+.
T Consensus       158 ~~~~~~~~~~~~l~~~~~  175 (226)
T 2chg_A          158 FKPVPKEAMKKRLLEICE  175 (226)
T ss_dssp             CCCCCHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHH
Confidence            999999999999987753

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.16  E-value=3.2e-10  Score=102.43  Aligned_cols=157  Identities=12%  Similarity=0.071  Sum_probs=98.0

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC-----CCHHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT-----PSITKIQDEIA  230 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i~  230 (333)
                      ...|+||+.+++.|.. +..   +++.|+|+.|+|||||++.+.+...  .   ..+|+.+...     .+...+...+.
T Consensus        12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~   82 (357)
T 2fna_A           12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLELQ   82 (357)
T ss_dssp             GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred             HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence            3579999999999999 765   4999999999999999999988753  1   2467776542     33444444443


Q ss_pred             HHhC--------------C------CCC---------CCCCHHHHHHHHHHHHccCceEEEEeCCCCch-----hhhhcc
Q 046889          231 GWLG--------------I------KEL---------PDNDELVRASLLCKRIEKQRVLVILDDLWVQI-----ELDRVG  276 (333)
Q Consensus       231 ~~l~--------------~------~~~---------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~l~  276 (333)
                      ..+.              .      +..         ...........+.+.-. ++++|||||++...     ++..+.
T Consensus        83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l  161 (357)
T 2fna_A           83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL  161 (357)
T ss_dssp             HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred             HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence            3321              0      000         01223333333333222 48999999997632     222111


Q ss_pred             CCC--CCCCcEEEEeeCChHHHhh----------cc---cceEecCCCCHHHHHHHHHhhc
Q 046889          277 IPY--GNDGCKFLLTSRSRAACNQ----------MQ---AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       277 ~~~--~~~g~~vivTTr~~~v~~~----------~~---~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...  ...+..+|+|++.......          +.   ...+.+.+|+.+|+.+++.+..
T Consensus       162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~  222 (357)
T 2fna_A          162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF  222 (357)
T ss_dssp             HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence            100  1136789999998754221          11   1348999999999999998753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.09  E-value=3.1e-09  Score=90.24  Aligned_cols=163  Identities=12%  Similarity=0.146  Sum_probs=91.8

Q ss_pred             cccccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046889          154 EGFYNFKSRESTMKDIMEAMKDEK-VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGW  232 (333)
Q Consensus       154 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~  232 (333)
                      .....++|++..++.+..++..+. .+.+.|+|++|+|||||++.+.+.......+...      ....... ...+...
T Consensus        20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~   92 (250)
T 1njg_A           20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT------PCGVCDN-CREIEQG   92 (250)
T ss_dssp             CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS------CCSCSHH-HHHHHTT
T ss_pred             ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC------CCcccHH-HHHHhcc
Confidence            344678999999999999987654 3478999999999999999998876532211000      0000000 0000000


Q ss_pred             hCCC----CCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHHH-hh
Q 046889          233 LGIK----ELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAAC-NQ  298 (333)
Q Consensus       233 l~~~----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v~-~~  298 (333)
                      ....    .............+.+.+     ..++.+||+||++..  ..+..+.  +.....++.+|+||+..... ..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~  172 (250)
T 1njg_A           93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT  172 (250)
T ss_dssp             CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred             CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence            0000    000000111111222222     246789999999653  2333331  11123467888888765421 11


Q ss_pred             cc--cceEecCCCCHHHHHHHHHhhcc
Q 046889          299 MQ--AHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       299 ~~--~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      +.  ...+.+.+++.++..+++.+.+.
T Consensus       173 l~~r~~~i~l~~l~~~e~~~~l~~~~~  199 (250)
T 1njg_A          173 ILSRCLQFHLKALDVEQIRHQLEHILN  199 (250)
T ss_dssp             HHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhccCCCCCHHHHHHHHHHHHH
Confidence            11  23499999999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.93  E-value=2.6e-09  Score=90.42  Aligned_cols=135  Identities=13%  Similarity=0.219  Sum_probs=82.9

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCC--------eEEEEEeCCCC------CH-
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFD--------EVAMAVVSQTP------SI-  222 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~--------~~~wv~v~~~~------~~-  222 (333)
                      +...+..++  +++|+|+||+|||||++.+.+..++..           .+.        .....+++|.+      +. 
T Consensus        23 vsl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~  100 (224)
T 2pcj_A           23 ISLSVKKGE--FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTAL  100 (224)
T ss_dssp             EEEEEETTC--EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred             eEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHH
Confidence            333344566  999999999999999999987654321           000        01123344432      11 


Q ss_pred             -----------------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------h
Q 046889          223 -----------------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------D  273 (333)
Q Consensus       223 -----------------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~  273 (333)
                                       ......+++.+++......     + -+...-.+.+.|..++-+++||++.+..|.      .
T Consensus       101 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~  180 (224)
T 2pcj_A          101 ENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM  180 (224)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHH
Confidence                             1123456677776533222     2 344566788999999999999999877442      2


Q ss_pred             hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+.......|..||++||+.+.+ .++++.+.|
T Consensus       181 ~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l  212 (224)
T 2pcj_A          181 DIFLKINEGGTSIVMVTHERELA-ELTHRTLEM  212 (224)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEE
T ss_pred             HHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence            22222222377899999999887 566665544

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.93  E-value=2.1e-09  Score=96.75  Aligned_cols=139  Identities=18%  Similarity=0.250  Sum_probs=87.9

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe--------------EEEEEeCCCCC-------
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE--------------VAMAVVSQTPS-------  221 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~--------------~~wv~v~~~~~-------  221 (333)
                      ++++...+..++  +++|+||+|+|||||++.+.+..++..   .|+.              .-...+.|.+.       
T Consensus        20 L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV   97 (359)
T 3fvq_A           20 LNDISLSLDPGE--ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV   97 (359)
T ss_dssp             EEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCH
T ss_pred             EEeeEEEEcCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCH
Confidence            333344445566  999999999999999999997754321   0100              00122333321       


Q ss_pred             -----------------HHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------
Q 046889          222 -----------------ITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------  272 (333)
Q Consensus       222 -----------------~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------  272 (333)
                                       ......++++.+++.....     .+ -+.++-.|.+.|..++-+|+||++.+..|.      
T Consensus        98 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l  177 (359)
T 3fvq_A           98 YRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI  177 (359)
T ss_dssp             HHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence                             1223456777777753222     22 345667799999999999999999877442      


Q ss_pred             hh-ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 DR-VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~~-l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .. +.......|..||++||+...+..++++.+.|
T Consensus       178 ~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl  212 (359)
T 3fvq_A          178 REDMIAALRANGKSAVFVSHDREEALQYADRIAVM  212 (359)
T ss_dssp             HHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEE
Confidence            11 21111234888999999999988887777443

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.92  E-value=1.8e-09  Score=93.14  Aligned_cols=139  Identities=18%  Similarity=0.259  Sum_probs=85.4

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-----------EEEEEeCCCC------CHH--
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-----------VAMAVVSQTP------SIT--  223 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-----------~~wv~v~~~~------~~~--  223 (333)
                      ++.+...+..++  +++|+|+||+|||||++.+.+..++...   +..           ....++++.+      ++.  
T Consensus        31 l~~vsl~i~~Ge--i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en  108 (256)
T 1vpl_A           31 LKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEY  108 (256)
T ss_dssp             EEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred             EEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHH
Confidence            334444445667  9999999999999999999876543210   000           0122334432      111  


Q ss_pred             ----------------HHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhc
Q 046889          224 ----------------KIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRV  275 (333)
Q Consensus       224 ----------------~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l  275 (333)
                                      .....+++.+++...     ...+ -+..+..+.+.|..++-+++||++.+..|.      ..+
T Consensus       109 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~  188 (256)
T 1vpl_A          109 LRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI  188 (256)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHH
Confidence                            123345666666421     1222 345566788999999999999999877442      222


Q ss_pred             cCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          276 GIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       276 ~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .......|..||++||+.+.+..+++..+.|
T Consensus       189 l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l  219 (256)
T 1vpl_A          189 LKQASQEGLTILVSSHNMLEVEFLCDRIALI  219 (256)
T ss_dssp             HHHHHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred             HHHHHhCCCEEEEEcCCHHHHHHHCCEEEEE
Confidence            1222223778999999999888777766433

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.91  E-value=1.2e-09  Score=95.06  Aligned_cols=139  Identities=19%  Similarity=0.291  Sum_probs=86.4

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe--------------EEEEEeCCCC-------C
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE--------------VAMAVVSQTP-------S  221 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~--------------~~wv~v~~~~-------~  221 (333)
                      ++.+...+..++  +++|+||||+|||||++.+.+..++...   ++.              ....++.|.+       +
T Consensus        24 L~~isl~i~~Ge--~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t  101 (275)
T 3gfo_A           24 LKGINMNIKRGE--VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS  101 (275)
T ss_dssp             EEEEEEEEETTS--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred             EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence            333444445667  9999999999999999999876543210   000              0122334432       1


Q ss_pred             H------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------
Q 046889          222 I------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------  271 (333)
Q Consensus       222 ~------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------  271 (333)
                      +                  .....++++.+++.....     .+ -+.++..|.+.|..++-+|+||++.+..|      
T Consensus       102 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~  181 (275)
T 3gfo_A          102 VYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE  181 (275)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence            1                  122345666777643222     22 34556778999999999999999987744      


Q ss_pred             hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..+..... ..|..||++||+.+.+..++++.+.|
T Consensus       182 i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l  217 (275)
T 3gfo_A          182 IMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM  217 (275)
T ss_dssp             HHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEE
T ss_pred             HHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            222222222 23788999999999888777776444

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.91  E-value=6e-09  Score=90.39  Aligned_cols=144  Identities=12%  Similarity=0.121  Sum_probs=88.6

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------Ce----EEEEEeCCCC-----
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------DE----VAMAVVSQTP-----  220 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~~----~~wv~v~~~~-----  220 (333)
                      |....++.+...+..++  +++|+|+||+|||||++.+.+..++...   |        ..    .....+.+.+     
T Consensus        22 ~~~~vL~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~   99 (266)
T 4g1u_C           22 QQQALINDVSLHIASGE--MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFP   99 (266)
T ss_dssp             TTEEEEEEEEEEEETTC--EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSC
T ss_pred             CCeeEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCC
Confidence            33334444555555677  9999999999999999999876543210   0        00    0011222221     


Q ss_pred             -----------------CHHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHcc------CceEEEEeCCCCchh
Q 046889          221 -----------------SITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEK------QRVLVILDDLWVQIE  271 (333)
Q Consensus       221 -----------------~~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~  271 (333)
                                       ........+++.+++.....     .+ -+..+..|.+.|..      ++-+|+||++.+..|
T Consensus       100 ~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD  179 (266)
T 4g1u_C          100 FSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD  179 (266)
T ss_dssp             CBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCC
T ss_pred             CCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCC
Confidence                             11234556777777653322     22 34456678888887      999999999987754


Q ss_pred             ------hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 ------LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ------~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                            +..+..... ..|..||++||+.+.+..++++.+.|
T Consensus       180 ~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl  221 (266)
T 4g1u_C          180 LYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLL  221 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEE
Confidence                  222222222 23568999999999888777776444

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.90  E-value=3.1e-09  Score=91.96  Aligned_cols=140  Identities=11%  Similarity=0.220  Sum_probs=85.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc--------CC-----C----eEEEEEeCCCC------C
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK--------MF-----D----EVAMAVVSQTP------S  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------~f-----~----~~~wv~v~~~~------~  221 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+..++..        ..     .    .....++.|.+      +
T Consensus        39 vL~~vsl~i~~Ge--i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~t  116 (263)
T 2olj_A           39 VLKGINVHIREGE--VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMT  116 (263)
T ss_dssp             EEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSC
T ss_pred             EEEeeEEEEcCCC--EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCC
Confidence            4444444455666  999999999999999999987654321        00     0    00022334432      1


Q ss_pred             HH-------------------HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889          222 IT-------------------KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL----  272 (333)
Q Consensus       222 ~~-------------------~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----  272 (333)
                      +.                   .....+++.+++.....     .+ -+.++..+.+.|..++-+|+||++.+..|.    
T Consensus       117 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~  196 (263)
T 2olj_A          117 VLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG  196 (263)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence            11                   11234566666642211     22 344566788899999999999999877542    


Q ss_pred             --hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 --DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 --~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                        ..+.......|..||++||+.+.+..++++.+.|
T Consensus       197 ~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  232 (263)
T 2olj_A          197 EVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM  232 (263)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence              2222222223778999999999887777766444

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.90  E-value=3.9e-08  Score=87.13  Aligned_cols=166  Identities=9%  Similarity=0.092  Sum_probs=103.4

Q ss_pred             ccchHHHHHHHHHHhh----cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC--eEEEEEeCCCCCHHHHHHHH
Q 046889          159 FKSRESTMKDIMEAMK----DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD--EVAMAVVSQTPSITKIQDEI  229 (333)
Q Consensus       159 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~--~~~wv~v~~~~~~~~~~~~i  229 (333)
                      +.+|+++++.|...|.    .+....+.|+|+.|+|||++++.+.........   ..  ..+.+......+...+...|
T Consensus        22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I  101 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI  101 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence            6789999998887764    356678999999999999999999988764321   11  23455555666778889999


Q ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHH---ccCceEEEEeCCCCchh---hhhcc-CC-CCCCCcEEEEeeCChHH------
Q 046889          230 AGWLGIKELPDNDELVRASLLCKRI---EKQRVLVILDDLWVQIE---LDRVG-IP-YGNDGCKFLLTSRSRAA------  295 (333)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~---~~~l~-~~-~~~~g~~vivTTr~~~v------  295 (333)
                      ++++................+...+   ..++++++||++....+   +..+. .+ .......||.++...+.      
T Consensus       102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~  181 (318)
T 3te6_A          102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQIN  181 (318)
T ss_dssp             HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHH
T ss_pred             HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcc
Confidence            9988543222222223333333333   34678999999876421   21111 11 12222334555544321      


Q ss_pred             ---HhhcccceEecCCCCHHHHHHHHHhhccc
Q 046889          296 ---CNQMQAHIVDVRTLTEEESWRSAEGKRRV  324 (333)
Q Consensus       296 ---~~~~~~~~~~l~~L~~~e~~~lf~~~a~~  324 (333)
                         ..++....+.+.+++.+|-.+++.+++-.
T Consensus       182 ~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~  213 (318)
T 3te6_A          182 IMPSLKAHFTEIKLNKVDKNELQQMIITRLKS  213 (318)
T ss_dssp             TCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             hhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence               22344345999999999999999988743

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.90  E-value=2.9e-09  Score=95.83  Aligned_cols=140  Identities=11%  Similarity=0.225  Sum_probs=89.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCCC-----
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTPS-----  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~~-----  221 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+..++...   |+.               .-...+.|.+.     
T Consensus        43 aL~~vsl~i~~Ge--i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~  120 (366)
T 3tui_C           43 ALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR  120 (366)
T ss_dssp             EEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS
T ss_pred             EEEeeEEEEcCCC--EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC
Confidence            3444555555677  9999999999999999999876543210   000               01223344331     


Q ss_pred             -H------------------HHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889          222 -I------------------TKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-----  271 (333)
Q Consensus       222 -~------------------~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----  271 (333)
                       +                  ......+++.+++...     ...+ -+.++-.|.+.|..++-+|++|++.+..|     
T Consensus       121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~  200 (366)
T 3tui_C          121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR  200 (366)
T ss_dssp             CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence             1                  1224456777776422     1222 35567789999999999999999987754     


Q ss_pred             -hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 -LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 -~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                       +..+..... ..|..||++||+..++..++++.+.|
T Consensus       201 ~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl  237 (366)
T 3tui_C          201 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVI  237 (366)
T ss_dssp             HHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence             222222222 33888999999999988877776433

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.90  E-value=7.6e-09  Score=84.55  Aligned_cols=150  Identities=11%  Similarity=0.131  Sum_probs=85.1

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----CCeEEEEEeCCCCCHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----FDEVAMAVVSQTPSITKIQDEI  229 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----f~~~~wv~v~~~~~~~~~~~~i  229 (333)
                      ....++||++.++.+...+..+....+.|+|+.|+|||+|++.+.........     ....+++..      ..+.   
T Consensus        20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---   90 (195)
T 1jbk_A           20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM------GALV---   90 (195)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH------HHHH---
T ss_pred             cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH------HHHh---
Confidence            34568999999999999998766667899999999999999999987653211     112233322      1111   


Q ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHH--ccCceEEEEeCCCCch---------hhhhccCC-CCCCCcEEEEeeCChHHH-
Q 046889          230 AGWLGIKELPDNDELVRASLLCKRI--EKQRVLVILDDLWVQI---------ELDRVGIP-YGNDGCKFLLTSRSRAAC-  296 (333)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~-~~~~g~~vivTTr~~~v~-  296 (333)
                          .... ...........+.+.+  ..++.+|+|||+....         .+..+... ....+..+|+||...... 
T Consensus        91 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~  165 (195)
T 1jbk_A           91 ----AGAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ  165 (195)
T ss_dssp             ----TTTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHH
T ss_pred             ----ccCC-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHH
Confidence                0000 0000111122222222  2467899999997542         11111111 122345677777765532 


Q ss_pred             -----hhcccc--eEecCCCCHHHHHHHH
Q 046889          297 -----NQMQAH--IVDVRTLTEEESWRSA  318 (333)
Q Consensus       297 -----~~~~~~--~~~l~~L~~~e~~~lf  318 (333)
                           ..+..+  .+.+.+++.++..+++
T Consensus       166 ~~~~~~~l~~r~~~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          166 YIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             HHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence                 111122  3889999988877654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.88  E-value=1.8e-09  Score=93.00  Aligned_cols=133  Identities=15%  Similarity=0.242  Sum_probs=83.3

Q ss_pred             HHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCC------H-----------------
Q 046889          170 MEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPS------I-----------------  222 (333)
Q Consensus       170 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~------~-----------------  222 (333)
                      ...+..++  +++|+|+||+|||||++.+.+..++...    ...+  .+++|.+.      +                 
T Consensus        25 sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i--~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~  100 (253)
T 2nq2_C           25 NFDLNKGD--ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSI--GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK  100 (253)
T ss_dssp             EEEEETTC--EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCE--EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCC
T ss_pred             EEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccE--EEEcCCCccCCCCCHHHHHHHhhhhhcccccC
Confidence            33344566  9999999999999999999887643211    0111  22233210      0                 


Q ss_pred             -----HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCC-Cc
Q 046889          223 -----TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGND-GC  284 (333)
Q Consensus       223 -----~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~-g~  284 (333)
                           ......+++.+++....     ..+ -+...-.+.+.|..++-+++||++.+..|.      ..+....... |.
T Consensus       101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~  180 (253)
T 2nq2_C          101 PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM  180 (253)
T ss_dssp             CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence                 12244566667664221     122 344566788889999999999999877542      2222222223 77


Q ss_pred             EEEEeeCChHHHhhcccceEec
Q 046889          285 KFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       285 ~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .||++||+.+.+..++++.+.+
T Consensus       181 tvi~vtHd~~~~~~~~d~v~~l  202 (253)
T 2nq2_C          181 TVVFTTHQPNQVVAIANKTLLL  202 (253)
T ss_dssp             EEEEEESCHHHHHHHCSEEEEE
T ss_pred             EEEEEecCHHHHHHhCCEEEEE
Confidence            8999999999887777766444

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.86  E-value=2.9e-09  Score=96.44  Aligned_cols=137  Identities=15%  Similarity=0.206  Sum_probs=86.8

Q ss_pred             HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCCC------H------
Q 046889          168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTPS------I------  222 (333)
Q Consensus       168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~~------~------  222 (333)
                      .+...+..++  +++|+||+|+|||||++.+.+..++...   |+          ..-...+.|.+.      +      
T Consensus        21 ~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~   98 (381)
T 3rlf_A           21 DINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSF   98 (381)
T ss_dssp             EEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTH
T ss_pred             eeEEEECCCC--EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHH
Confidence            3333344566  9999999999999999999977643210   00          011223344331      1      


Q ss_pred             ------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCC
Q 046889          223 ------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIP  278 (333)
Q Consensus       223 ------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~  278 (333)
                                  .....++++.+++.....     .+ -+.++-.|.+.|..++-+|+||++.+..|.      ..+...
T Consensus        99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~  178 (381)
T 3rlf_A           99 GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR  178 (381)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence                        123455677777653222     22 345567788999999999999999877542      122122


Q ss_pred             CC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          279 YG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       279 ~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .. ..|..||++||+...+..++++.+.|
T Consensus       179 l~~~~g~tii~vTHd~~ea~~~aDri~vl  207 (381)
T 3rlf_A          179 LHKRLGRTMIYVTHDQVEAMTLADKIVVL  207 (381)
T ss_dssp             HHHHHCCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence            22 23788999999999888887777433

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.85  E-value=1.4e-08  Score=90.43  Aligned_cols=155  Identities=17%  Similarity=0.193  Sum_probs=93.2

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGW  232 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~  232 (333)
                      |.....++|++..++.+..++..+..+.+.|+|+.|+||||+++.+.............+++..+....... ++.++..
T Consensus        17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~   95 (323)
T 1sxj_B           17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQIKH   95 (323)
T ss_dssp             CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred             CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHHHH
Confidence            334567899999999999999887655599999999999999999998753211101122332222222211 1222221


Q ss_pred             hCCCCCCCCCHHHHHHHHHHHH-ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-Hhhccc--ceE
Q 046889          233 LGIKELPDNDELVRASLLCKRI-EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-CNQMQA--HIV  304 (333)
Q Consensus       233 l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-~~~~~~--~~~  304 (333)
                      +....              ..+ .+++.++|+||++..  .....+.  +.....++.+|+||+...- ...+..  ..+
T Consensus        96 ~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i  161 (323)
T 1sxj_B           96 FAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL  161 (323)
T ss_dssp             HHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             HHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence            11000              001 345889999999753  2222221  1122346788888876532 111111  248


Q ss_pred             ecCCCCHHHHHHHHHhhc
Q 046889          305 DVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       305 ~l~~L~~~e~~~lf~~~a  322 (333)
                      .+.+++.++..+++.+.+
T Consensus       162 ~~~~~~~~~~~~~l~~~~  179 (323)
T 1sxj_B          162 RYSKLSDEDVLKRLLQII  179 (323)
T ss_dssp             ECCCCCHHHHHHHHHHHH
T ss_pred             eecCCCHHHHHHHHHHHH
Confidence            999999999999998765

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.85  E-value=2.9e-09  Score=91.02  Aligned_cols=138  Identities=17%  Similarity=0.164  Sum_probs=81.7

Q ss_pred             HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe-----EEEEEeCCCCC---------
Q 046889          167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE-----VAMAVVSQTPS---------  221 (333)
Q Consensus       167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~-----~~wv~v~~~~~---------  221 (333)
                      +.+...+..++  +++|+|+||+|||||++.+.+..++..           ....     ....+++|.+.         
T Consensus        23 ~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e  100 (240)
T 1ji0_A           23 KGIDLKVPRGQ--IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYE  100 (240)
T ss_dssp             EEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHH
T ss_pred             eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHH
Confidence            33333444566  999999999999999999987654321           0000     00222333211         


Q ss_pred             --------------HHHHHHHHHHHhC-CCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hh
Q 046889          222 --------------ITKIQDEIAGWLG-IKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DR  274 (333)
Q Consensus       222 --------------~~~~~~~i~~~l~-~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~  274 (333)
                                    ....+..+++.++ +..     ....+ -+..+-.+.+.|..++-+++||++.+..|.      ..
T Consensus       101 nl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~  180 (240)
T 1ji0_A          101 NLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE  180 (240)
T ss_dssp             HHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                          1122344555552 321     12223 344566788889999999999999877442      22


Q ss_pred             ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.......|..||++||+.+.+..++++.+.+
T Consensus       181 ~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l  212 (240)
T 1ji0_A          181 VIQKINQEGTTILLVEQNALGALKVAHYGYVL  212 (240)
T ss_dssp             HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            21222224778999999998777666666444

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.84  E-value=3.8e-09  Score=91.52  Aligned_cols=139  Identities=14%  Similarity=0.222  Sum_probs=84.1

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------------------EEEEEeC
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------------------VAMAVVS  217 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------------------~~wv~v~  217 (333)
                      ++.+...+..++  +++|+|+||+|||||++.+.+..++...   |..                         ....++.
T Consensus        22 l~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~   99 (262)
T 1b0u_A           22 LKGVSLQARAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF   99 (262)
T ss_dssp             EEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred             EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEe
Confidence            334444455667  9999999999999999999876543210   000                         0022334


Q ss_pred             CCC------CHH-------------------HHHHHHHHHhCCCCC-CC-----CC-HHHHHHHHHHHHccCceEEEEeC
Q 046889          218 QTP------SIT-------------------KIQDEIAGWLGIKEL-PD-----ND-ELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       218 ~~~------~~~-------------------~~~~~i~~~l~~~~~-~~-----~~-~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                      |.+      ++.                   .....+++.+++... ..     .+ -+..+..+.+.|..++-+|+||+
T Consensus       100 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE  179 (262)
T 1b0u_A          100 QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE  179 (262)
T ss_dssp             SSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred             cCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            432      111                   112345666665422 11     22 34456678888889999999999


Q ss_pred             CCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          266 LWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       266 v~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.+..|.      ..+.......|..||++||+.+.+..++++.+.|
T Consensus       180 Pts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  226 (262)
T 1b0u_A          180 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL  226 (262)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred             CCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9877542      2222222223778999999999887777766444

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.83  E-value=5.3e-09  Score=89.81  Aligned_cols=132  Identities=18%  Similarity=0.280  Sum_probs=79.7

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCe------------EEEEEeCCCCC------H----------
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDE------------VAMAVVSQTPS------I----------  222 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~------------~~wv~v~~~~~------~----------  222 (333)
                      +..++  +++|+|+||+|||||++.+.+..++.+.  |..            ....++++.+.      +          
T Consensus        23 i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  100 (249)
T 2qi9_C           23 VRAGE--ILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD  100 (249)
T ss_dssp             EETTC--EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence            34566  8999999999999999999876542110  000            00122333221      1          


Q ss_pred             ---HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCce-------EEEEeCCCCchh------hhhccCCCC
Q 046889          223 ---TKIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRV-------LVILDDLWVQIE------LDRVGIPYG  280 (333)
Q Consensus       223 ---~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~-------LlVlDdv~~~~~------~~~l~~~~~  280 (333)
                         ......+++.+++....     ..+ -+..+..+.+.|..++-       +++||++.+..|      +..+.....
T Consensus       101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~  180 (249)
T 2qi9_C          101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS  180 (249)
T ss_dssp             TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence               22345667777764221     122 33445567777777777       999999987754      222222222


Q ss_pred             CCCcEEEEeeCChHHHhhcccceEec
Q 046889          281 NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       281 ~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|..||++||+.+.+..++++.+.|
T Consensus       181 ~~g~tviivtHd~~~~~~~~d~v~~l  206 (249)
T 2qi9_C          181 QQGLAIVMSSHDLNHTLRHAHRAWLL  206 (249)
T ss_dssp             HTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             hCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            23778999999999877666665433

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.83  E-value=2.8e-08  Score=84.30  Aligned_cols=132  Identities=13%  Similarity=0.093  Sum_probs=77.4

Q ss_pred             HHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCC-----HHH-----------HHHHHH
Q 046889          170 MEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPS-----ITK-----------IQDEIA  230 (333)
Q Consensus       170 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~-----~~~-----------~~~~i~  230 (333)
                      ...+..++  +++|+|++|+|||||++.+.+..++...   +... ..+++|.+.     +.+           .....+
T Consensus        28 sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~  104 (229)
T 2pze_A           28 NFKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVI  104 (229)
T ss_dssp             EEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSC-EEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHH
T ss_pred             EEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCE-EEEEecCCcccCCCHHHHhhccCCcChHHHHHHH
Confidence            33344566  9999999999999999999887643221   1100 123444321     111           112222


Q ss_pred             HHhCCC------C----------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhc-cCCCCCCCcEE
Q 046889          231 GWLGIK------E----------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRV-GIPYGNDGCKF  286 (333)
Q Consensus       231 ~~l~~~------~----------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l-~~~~~~~g~~v  286 (333)
                      +.++..      .          ....+ -+..+-.+.+.|..++-+++||++.+..|      +..+ ..... .|..|
T Consensus       105 ~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tv  183 (229)
T 2pze_A          105 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTR  183 (229)
T ss_dssp             HHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEE
T ss_pred             HHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEE
Confidence            222221      0          11223 34456678889999999999999987644      2222 11222 37789


Q ss_pred             EEeeCChHHHhhcccceEec
Q 046889          287 LLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       287 ivTTr~~~v~~~~~~~~~~l  306 (333)
                      |++||+...+.. +++.+.+
T Consensus       184 i~vtH~~~~~~~-~d~v~~l  202 (229)
T 2pze_A          184 ILVTSKMEHLKK-ADKILIL  202 (229)
T ss_dssp             EEECCCHHHHHH-CSEEEEE
T ss_pred             EEEcCChHHHHh-CCEEEEE
Confidence            999999987754 5555444

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.82  E-value=1.9e-08  Score=90.37  Aligned_cols=134  Identities=18%  Similarity=0.169  Sum_probs=85.1

Q ss_pred             HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeE----------EEEEeCCCC------CHH---------
Q 046889          172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEV----------AMAVVSQTP------SIT---------  223 (333)
Q Consensus       172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~----------~wv~v~~~~------~~~---------  223 (333)
                      .+..++  +++|+||+|+|||||++.+.+..++...   ++..          -...+.|.+      +..         
T Consensus        22 ~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~   99 (348)
T 3d31_A           22 KVESGE--YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM   99 (348)
T ss_dssp             EECTTC--EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred             EEcCCC--EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence            344566  9999999999999999999977543210   1000          012334432      111         


Q ss_pred             ------HHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCC-CCCCc
Q 046889          224 ------KIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPY-GNDGC  284 (333)
Q Consensus       224 ------~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~-~~~g~  284 (333)
                            ....++++.+++......     + -+.++-.|.+.|..++-+|+||++.+..|.      ..+.... ...|.
T Consensus       100 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~  179 (348)
T 3d31_A          100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL  179 (348)
T ss_dssp             HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCC
Confidence                  223456777777533222     2 344566789999999999999999877442      2221222 22377


Q ss_pred             EEEEeeCChHHHhhcccceEecC
Q 046889          285 KFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       285 ~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .||++||+...+..++++.+.|.
T Consensus       180 tii~vTHd~~~~~~~adri~vl~  202 (348)
T 3d31_A          180 TVLHITHDQTEARIMADRIAVVM  202 (348)
T ss_dssp             EEEEEESCHHHHHHHCSEEEEES
T ss_pred             EEEEEeCCHHHHHHhCCEEEEEE
Confidence            89999999998887777765443

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.82  E-value=1.4e-08  Score=88.17  Aligned_cols=141  Identities=13%  Similarity=0.156  Sum_probs=85.6

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH--Hhh-c--CCC-------------eEEEEEeCCCCC----
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA--KEK-K--MFD-------------EVAMAVVSQTPS----  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~-~--~f~-------------~~~wv~v~~~~~----  221 (333)
                      ..++.+...+..++  +++|+|+||+|||||++.+.+..  .+. +  .+.             ......+.+.+.    
T Consensus        34 ~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~  111 (267)
T 2zu0_C           34 AILRGLSLDVHPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG  111 (267)
T ss_dssp             EEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred             EEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence            34444444455677  99999999999999999999862  111 1  000             000223444331    


Q ss_pred             --H-------------------------HHHHHHHHHHhCCC-CCC------CCC-HHHHHHHHHHHHccCceEEEEeCC
Q 046889          222 --I-------------------------TKIQDEIAGWLGIK-ELP------DND-ELVRASLLCKRIEKQRVLVILDDL  266 (333)
Q Consensus       222 --~-------------------------~~~~~~i~~~l~~~-~~~------~~~-~~~~~~~l~~~l~~k~~LlVlDdv  266 (333)
                        .                         .....++++.+++. ...      ..+ -+..+..|.+.|..++-+|+||++
T Consensus       112 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEP  191 (267)
T 2zu0_C          112 VSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES  191 (267)
T ss_dssp             CBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred             ccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence              0                         01233556666763 111      133 344566788899999999999999


Q ss_pred             CCchh------hhhccCCCCCCCcEEEEeeCChHHHhhc-ccceEec
Q 046889          267 WVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQM-QAHIVDV  306 (333)
Q Consensus       267 ~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~-~~~~~~l  306 (333)
                      .+..|      +..+.......|..||++||+...+..+ +++.+.|
T Consensus       192 ts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l  238 (267)
T 2zu0_C          192 DSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL  238 (267)
T ss_dssp             TTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence            87744      2222223334478899999999887764 5655433

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.82  E-value=6.3e-09  Score=93.93  Aligned_cols=135  Identities=21%  Similarity=0.254  Sum_probs=85.0

Q ss_pred             HHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH--------
Q 046889          170 MEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI--------  222 (333)
Q Consensus       170 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~--------  222 (333)
                      ...+..++  +++|+||+|+|||||++.+.+..++...   ++.          .-...+.|.+      ++        
T Consensus        23 sl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~  100 (362)
T 2it1_A           23 NLKIKDGE--FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPL  100 (362)
T ss_dssp             EEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred             EEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHH
Confidence            33344566  9999999999999999999977543210   000          0122334432      11        


Q ss_pred             ----------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCC
Q 046889          223 ----------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYG  280 (333)
Q Consensus       223 ----------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~  280 (333)
                                .....++++.+++......     + -+.++-.|.+.|..++-+|+||++.+..|.      ..+.....
T Consensus       101 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  180 (362)
T 2it1_A          101 ELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ  180 (362)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence                      1123456777777533222     2 345566799999999999999999877442      22212221


Q ss_pred             -CCCcEEEEeeCChHHHhhcccceEec
Q 046889          281 -NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       281 -~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                       ..|..+|++||+...+..++++.+.|
T Consensus       181 ~~~g~tvi~vTHd~~~a~~~adri~vl  207 (362)
T 2it1_A          181 KELGITTVYVTHDQAEALAMADRIAVI  207 (362)
T ss_dssp             HHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence             22778999999999887777776433

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.82  E-value=5.6e-09  Score=88.96  Aligned_cols=133  Identities=14%  Similarity=0.172  Sum_probs=80.4

Q ss_pred             HHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCC--------eEEEEEeCCCCC------HH--
Q 046889          171 EAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFD--------EVAMAVVSQTPS------IT--  223 (333)
Q Consensus       171 ~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~--------~~~wv~v~~~~~------~~--  223 (333)
                      ..+..++  +++|+||||+|||||++.+.+..++..           .+.        ......+.|.+.      +.  
T Consensus        26 l~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~en  103 (235)
T 3tif_A           26 LNIKEGE--FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALEN  103 (235)
T ss_dssp             EEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHH
T ss_pred             EEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHH
Confidence            3344566  999999999999999999987654321           000        001223334321      11  


Q ss_pred             -------------------HHHHHHHHHhCCCCC------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh-----
Q 046889          224 -------------------KIQDEIAGWLGIKEL------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-----  272 (333)
Q Consensus       224 -------------------~~~~~i~~~l~~~~~------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-----  272 (333)
                                         .....++..+++...      ...+ -+.+...+.+.|..++-+|+||++.+..|.     
T Consensus       104 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~  183 (235)
T 3tif_A          104 VELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK  183 (235)
T ss_dssp             HHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred             HHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence                               112345555665321      1122 344567788999999999999999877542     


Q ss_pred             -hhccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          273 -DRVGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 -~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                       ..+...... .|..||++||+.+++ .++++.+.|
T Consensus       184 i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l  218 (235)
T 3tif_A          184 IMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYL  218 (235)
T ss_dssp             HHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEE
T ss_pred             HHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEE
Confidence             222222222 278899999999976 456665444

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.81  E-value=8e-09  Score=88.19  Aligned_cols=128  Identities=18%  Similarity=0.177  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC------CH----------------H
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP------SI----------------T  223 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~------~~----------------~  223 (333)
                      .+++|+|+||+|||||++.+.+..++...   ++.          ....++++.+      +.                .
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~  104 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD  104 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence            59999999999999999999976543210   000          0011222221      11                1


Q ss_pred             HHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCC-CCcEEEEee
Q 046889          224 KIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGN-DGCKFLLTS  290 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~-~g~~vivTT  290 (333)
                      ....++++.+++.....     .+ .+..+..+.+.|..++-+++||++.+..|.      ..+...... .|..||++|
T Consensus       105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt  184 (240)
T 2onk_A          105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT  184 (240)
T ss_dssp             HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            22345677777653322     22 344566788999999999999999877542      222222222 267799999


Q ss_pred             CChHHHhhcccceEec
Q 046889          291 RSRAACNQMQAHIVDV  306 (333)
Q Consensus       291 r~~~v~~~~~~~~~~l  306 (333)
                      |+.+.+..++++.+.+
T Consensus       185 Hd~~~~~~~~d~i~~l  200 (240)
T 2onk_A          185 HDLIEAAMLADEVAVM  200 (240)
T ss_dssp             SCHHHHHHHCSEEEEE
T ss_pred             CCHHHHHHhCCEEEEE
Confidence            9998877777766444

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.80  E-value=4.5e-09  Score=94.57  Aligned_cols=140  Identities=11%  Similarity=0.258  Sum_probs=87.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CH---
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SI---  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~---  222 (333)
                      .++.+...+..++  +++|+||+|+|||||++.+.+..++...   |+          ..-...+.|.+      ++   
T Consensus        30 vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en  107 (355)
T 1z47_A           30 SVRGVSFQIREGE--MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDN  107 (355)
T ss_dssp             CEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHH
T ss_pred             EEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHH
Confidence            3444444455677  9999999999999999999977543210   00          00112233321      11   


Q ss_pred             ---------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhc
Q 046889          223 ---------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRV  275 (333)
Q Consensus       223 ---------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l  275 (333)
                                     .....++++.+++.....     .+ -+.++-.|.+.|..++-+|+||++.+..|.      ..+
T Consensus       108 i~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~  187 (355)
T 1z47_A          108 VSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTF  187 (355)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence                           122345677777643222     22 345567789999999999999999877542      222


Q ss_pred             cCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          276 GIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       276 ~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..... ..|..||++||+...+..++++.+.|
T Consensus       188 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl  219 (355)
T 1z47_A          188 VRQVHDEMGVTSVFVTHDQEEALEVADRVLVL  219 (355)
T ss_dssp             HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHhcCCEEEEECCCHHHHHHhCCEEEEE
Confidence            12222 22778999999999888877776443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.79  E-value=5.4e-09  Score=94.26  Aligned_cols=133  Identities=22%  Similarity=0.218  Sum_probs=84.0

Q ss_pred             HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCC------CH----------
Q 046889          172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTP------SI----------  222 (333)
Q Consensus       172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~------~~----------  222 (333)
                      .+..++  +++|+||+|+|||||++.+.+..++...   |+          ..-...+.|.+      ++          
T Consensus        25 ~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~  102 (359)
T 2yyz_A           25 EVKDGE--FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRA  102 (359)
T ss_dssp             EECTTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSS
T ss_pred             EEcCCC--EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence            344566  9999999999999999999977543210   00          00112233332      11          


Q ss_pred             --------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCC-C
Q 046889          223 --------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYG-N  281 (333)
Q Consensus       223 --------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~-~  281 (333)
                              .....++++.+++.....     .+ -+.++-.|.+.|..++-+|+||++.+..|.      ..+..... .
T Consensus       103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~  182 (359)
T 2yyz_A          103 RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE  182 (359)
T ss_dssp             SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence                    123456677777653222     22 345566799999999999999999877542      22211222 2


Q ss_pred             CCcEEEEeeCChHHHhhcccceEec
Q 046889          282 DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .|..+|++||+...+..++++.+.|
T Consensus       183 ~g~tvi~vTHd~~~~~~~adri~vl  207 (359)
T 2yyz_A          183 LGITSVYVTHDQAEAMTMASRIAVF  207 (359)
T ss_dssp             HCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             cCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            2778999999999888777776444

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.78  E-value=1.2e-08  Score=88.66  Aligned_cols=134  Identities=16%  Similarity=0.270  Sum_probs=81.7

Q ss_pred             HHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe---------EEEEEeCCCC-------CH---------
Q 046889          171 EAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE---------VAMAVVSQTP-------SI---------  222 (333)
Q Consensus       171 ~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~---------~~wv~v~~~~-------~~---------  222 (333)
                      ..+..++  +++|+|+||+|||||++.+.+..++..   .+..         ....++++.+       +.         
T Consensus        28 l~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~  105 (266)
T 2yz2_A           28 LVINEGE--CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK  105 (266)
T ss_dssp             EEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTT
T ss_pred             EEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHH
Confidence            3344566  999999999999999999987654321   0000         0012233321       11         


Q ss_pred             --------HHHHHHHHHHhCCC--CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCC
Q 046889          223 --------TKIQDEIAGWLGIK--ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYG  280 (333)
Q Consensus       223 --------~~~~~~i~~~l~~~--~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~  280 (333)
                              ......+++.+++.  ....     .+ -+..+-.+.+.|..++-+++||++.+..|.      ..+.....
T Consensus       106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~  185 (266)
T 2yz2_A          106 NFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK  185 (266)
T ss_dssp             TTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence                    12234566666664  2211     22 344566788899999999999999877542      22222222


Q ss_pred             CCCcEEEEeeCChHHHhhcccceEec
Q 046889          281 NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       281 ~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..|..||++||+...+..++++.+.|
T Consensus       186 ~~g~tii~vtHd~~~~~~~~d~v~~l  211 (266)
T 2yz2_A          186 TLGKTVILISHDIETVINHVDRVVVL  211 (266)
T ss_dssp             HTTCEEEEECSCCTTTGGGCSEEEEE
T ss_pred             HcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            23778999999988877666665433

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.78  E-value=1.1e-08  Score=88.33  Aligned_cols=140  Identities=15%  Similarity=0.206  Sum_probs=84.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe-----EEEEEeCCCCC-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE-----VAMAVVSQTPS-------  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~-----~~wv~v~~~~~-------  221 (333)
                      .++.+...+..++  +++|+|+||+|||||++.+.+..++..           ....     ....+++|.+.       
T Consensus        22 vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv   99 (257)
T 1g6h_A           22 ALDGVSISVNKGD--VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV   99 (257)
T ss_dssp             EEEEECCEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBH
T ss_pred             eEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcH
Confidence            3444444455677  999999999999999999986653211           0000     00122233211       


Q ss_pred             ------------------------------HHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeC
Q 046889          222 ------------------------------ITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       222 ------------------------------~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                                                    .......+++.+++.....     .+ -+.+...+.+.|..++-+|+||+
T Consensus       100 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE  179 (257)
T 1g6h_A          100 LENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE  179 (257)
T ss_dssp             HHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred             HHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence                                          0122345566666542211     22 34456678888889999999999


Q ss_pred             CCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          266 LWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       266 v~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.+..|.      ..+.......|..||++||+.+.+..++++.+.|
T Consensus       180 Pts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  226 (257)
T 1g6h_A          180 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM  226 (257)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred             CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            9877542      2222222223778999999998877777766443

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.77  E-value=9.9e-09  Score=93.09  Aligned_cols=133  Identities=18%  Similarity=0.253  Sum_probs=83.7

Q ss_pred             HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe----------------EEEEEeCCCC------CH----
Q 046889          172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE----------------VAMAVVSQTP------SI----  222 (333)
Q Consensus       172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~----------------~~wv~v~~~~------~~----  222 (333)
                      .+..++  +++|+|++|+|||||++.+.+..++..   .++.                .-...+.|.+      ++    
T Consensus        25 ~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni  102 (372)
T 1g29_1           25 EVKDGE--FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNI  102 (372)
T ss_dssp             EEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHH
T ss_pred             EEcCCC--EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHH
Confidence            344566  999999999999999999997754321   0110                0112333432      11    


Q ss_pred             --------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhcc
Q 046889          223 --------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVG  276 (333)
Q Consensus       223 --------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~  276 (333)
                                    .....++++.+++.....     .+ -+.++-.|.+.|..++-+|+||++.+..|.      ..+.
T Consensus       103 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  182 (372)
T 1g29_1          103 AFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL  182 (372)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence                          112345677777643222     22 344566789999999999999999877442      2221


Q ss_pred             CCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          277 IPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       277 ~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .... ..|..||++||+...+..++++.+.|
T Consensus       183 ~~l~~~~g~tvi~vTHd~~~a~~~adri~vl  213 (372)
T 1g29_1          183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVM  213 (372)
T ss_dssp             HHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHhcCCEEEEECCCHHHHHHhCCEEEEE
Confidence            2222 22778999999999888777776444

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.77  E-value=3.9e-09  Score=88.47  Aligned_cols=134  Identities=18%  Similarity=0.244  Sum_probs=81.7

Q ss_pred             HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------EEEEEeCCCC------CH--------
Q 046889          167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------VAMAVVSQTP------SI--------  222 (333)
Q Consensus       167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------~~wv~v~~~~------~~--------  222 (333)
                      +.+...+..++  +++|+|+||+|||||++.+.+..++...   +..       ....++++.+      ++        
T Consensus        26 ~~vsl~i~~Ge--~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~  103 (214)
T 1sgw_A           26 ERITMTIEKGN--VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA  103 (214)
T ss_dssp             EEEEEEEETTC--CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHH
T ss_pred             eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence            33344445566  8999999999999999999876543210   100       0122334432      11        


Q ss_pred             --------HHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCC
Q 046889          223 --------TKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGND  282 (333)
Q Consensus       223 --------~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~  282 (333)
                              ......+++.+++... ..     + -+..+-.+.+.|..++-+++||++.+..|.      ..+.......
T Consensus       104 ~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~  182 (214)
T 1sgw_A          104 SLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE  182 (214)
T ss_dssp             HHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence                    1223456667776433 22     2 344566788899999999999999876442      2222222223


Q ss_pred             CcEEEEeeCChHHHhhcccce
Q 046889          283 GCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       283 g~~vivTTr~~~v~~~~~~~~  303 (333)
                      |..||++||+...+..++...
T Consensus       183 g~tiiivtHd~~~~~~~~d~v  203 (214)
T 1sgw_A          183 KGIVIISSREELSYCDVNENL  203 (214)
T ss_dssp             HSEEEEEESSCCTTSSEEEEG
T ss_pred             CCEEEEEeCCHHHHHHhCCEE
Confidence            678999999988766655544

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.76  E-value=2.4e-08  Score=89.00  Aligned_cols=151  Identities=15%  Similarity=0.180  Sum_probs=90.2

Q ss_pred             cccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046889          154 EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL  233 (333)
Q Consensus       154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l  233 (333)
                      .....++|++..++.+..++..+..+.+.|+|+.|+||||+++.++........-.....+..+..... ..++..+.  
T Consensus        22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--   98 (327)
T 1iqp_A           22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI-NVIREKVK--   98 (327)
T ss_dssp             CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH-HTTHHHHH--
T ss_pred             CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch-HHHHHHHH--
Confidence            345678999999999999998877666999999999999999999987542110001122221111000 00111110  


Q ss_pred             CCCCCCCCCHHHHHHHHHHH--H-ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-Hhhccc--ce
Q 046889          234 GIKELPDNDELVRASLLCKR--I-EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-CNQMQA--HI  303 (333)
Q Consensus       234 ~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-~~~~~~--~~  303 (333)
                                     .....  + ..++.++|+||++..  .....+.  +.....++++|+||....- ...+..  ..
T Consensus        99 ---------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~  163 (327)
T 1iqp_A           99 ---------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI  163 (327)
T ss_dssp             ---------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred             ---------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence                           11100  1 156789999999754  2222221  1112346788888876542 111111  24


Q ss_pred             EecCCCCHHHHHHHHHhhc
Q 046889          304 VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       304 ~~l~~L~~~e~~~lf~~~a  322 (333)
                      +.+.+++.++...++.+.+
T Consensus       164 ~~~~~l~~~~~~~~l~~~~  182 (327)
T 1iqp_A          164 FRFRPLRDEDIAKRLRYIA  182 (327)
T ss_dssp             EECCCCCHHHHHHHHHHHH
T ss_pred             EEecCCCHHHHHHHHHHHH
Confidence            8999999999999988765

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.76  E-value=6.5e-09  Score=93.70  Aligned_cols=137  Identities=20%  Similarity=0.269  Sum_probs=85.4

Q ss_pred             HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------------EEEEEeCCCC------CH-
Q 046889          168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------------VAMAVVSQTP------SI-  222 (333)
Q Consensus       168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------------~~wv~v~~~~------~~-  222 (333)
                      .+...+..++  +++|+||+|+|||||++.+.+..++...   ++.               .-...+.|.+      +. 
T Consensus        23 ~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~  100 (353)
T 1oxx_K           23 NVNINIENGE--RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAF  100 (353)
T ss_dssp             EEEEEECTTC--EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHH
T ss_pred             ceEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHH
Confidence            3333344566  9999999999999999999976543210   000               0112233322      11 


Q ss_pred             -----------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------h
Q 046889          223 -----------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------D  273 (333)
Q Consensus       223 -----------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~  273 (333)
                                       .....++++.+++.....     .+ -+.++-.|.+.|..++-+|+||++.+..|.      .
T Consensus       101 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~  180 (353)
T 1oxx_K          101 ENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR  180 (353)
T ss_dssp             HHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH
Confidence                             123456677777653222     22 344566789999999999999999876442      2


Q ss_pred             hccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 RVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+..... ..|..||++||+.+.+..++++.+.|
T Consensus       181 ~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl  214 (353)
T 1oxx_K          181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVL  214 (353)
T ss_dssp             HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            2212221 23778999999999888777776443

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.76  E-value=6.5e-09  Score=94.17  Aligned_cols=138  Identities=16%  Similarity=0.177  Sum_probs=84.6

Q ss_pred             HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe----------EEEEEeCCCC-------------
Q 046889          167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE----------VAMAVVSQTP-------------  220 (333)
Q Consensus       167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~----------~~wv~v~~~~-------------  220 (333)
                      +.+...+..++  +++|+||+|+|||||++.+.+..++...   |+.          .-...+.|.+             
T Consensus        28 ~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~  105 (372)
T 1v43_A           28 NKLNLTIKDGE--FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIA  105 (372)
T ss_dssp             EEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHH
T ss_pred             eeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHH
Confidence            33444444566  9999999999999999999976543210   000          0011222221             


Q ss_pred             --------CH---HHHHHHHHHHhCCCCCCC------CCHHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccC
Q 046889          221 --------SI---TKIQDEIAGWLGIKELPD------NDELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGI  277 (333)
Q Consensus       221 --------~~---~~~~~~i~~~l~~~~~~~------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~  277 (333)
                              ..   ......+++.+++.....      +.-+.++-.|.+.|..++-+|+||++.+..|.      ..+..
T Consensus       106 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~  185 (372)
T 1v43_A          106 FPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK  185 (372)
T ss_dssp             TTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence                    01   123456677777642211      12345667788999999999999999877442      22212


Q ss_pred             CCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          278 PYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       278 ~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ... ..|..+|++||+...+..++++.+.|
T Consensus       186 ~l~~~~g~tvi~vTHd~~~a~~~adri~vl  215 (372)
T 1v43_A          186 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVM  215 (372)
T ss_dssp             HHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            222 22778999999999887777776444

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.75  E-value=1.4e-08  Score=87.27  Aligned_cols=136  Identities=13%  Similarity=0.133  Sum_probs=79.7

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH--HHhhc---CCCe-------------EEEEEeCCCCC------HH-
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ--AKEKK---MFDE-------------VAMAVVSQTPS------IT-  223 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~--~~~~~---~f~~-------------~~wv~v~~~~~------~~-  223 (333)
                      +...+..++  +++|+|+||+|||||++.+.+.  .++..   .++.             .....++|.+.      .. 
T Consensus        22 vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   99 (250)
T 2d2e_A           22 VNLVVPKGE--VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIAN   99 (250)
T ss_dssp             EEEEEETTC--EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHH
T ss_pred             eEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHH
Confidence            333344566  9999999999999999999985  22110   0000             00112233221      10 


Q ss_pred             --------------------HHHHHHHHHhCCC-C---C--CC-CC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          224 --------------------KIQDEIAGWLGIK-E---L--PD-ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       224 --------------------~~~~~i~~~l~~~-~---~--~~-~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                                          .....+++.+++. .   .  .. .+ -+..+-.+.+.|..++-+++||++.+..|    
T Consensus       100 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~  179 (250)
T 2d2e_A          100 FLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDAL  179 (250)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHH
T ss_pred             HHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHH
Confidence                                1223456666662 1   1  11 22 34456678888889999999999987644    


Q ss_pred             --hhhccCCCCCCCcEEEEeeCChHHHhhc-ccceEec
Q 046889          272 --LDRVGIPYGNDGCKFLLTSRSRAACNQM-QAHIVDV  306 (333)
Q Consensus       272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~-~~~~~~l  306 (333)
                        +..+.......|..||++||+...+..+ +++.+.|
T Consensus       180 ~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l  217 (250)
T 2d2e_A          180 KVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVM  217 (250)
T ss_dssp             HHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence              2222222233478899999999887766 3555433

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.71  E-value=1.3e-08  Score=87.19  Aligned_cols=128  Identities=12%  Similarity=0.159  Sum_probs=77.4

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----------------C-CeEEEEEeCCCCC--------------
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----------------F-DEVAMAVVSQTPS--------------  221 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----------------f-~~~~wv~v~~~~~--------------  221 (333)
                      +..++  +++|+|+||+|||||++.+.+..++...                + ..+.|  +++.+.              
T Consensus        25 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~--v~q~~~l~~~tv~enl~~~~  100 (243)
T 1mv5_A           25 AQPNS--IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF--VSQDSAIMAGTIRENLTYGL  100 (243)
T ss_dssp             ECTTE--EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE--ECCSSCCCCEEHHHHTTSCT
T ss_pred             EcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE--EcCCCccccccHHHHHhhhc
Confidence            34555  9999999999999999999876543210                0 01112  222210              


Q ss_pred             ----HHHHHHHHHHHhCCCCC----------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhh
Q 046889          222 ----ITKIQDEIAGWLGIKEL----------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDR  274 (333)
Q Consensus       222 ----~~~~~~~i~~~l~~~~~----------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~  274 (333)
                          .......+++.++....                ...+ -+..+-.+.+.|..++-+++||++.+..|      +..
T Consensus       101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~  180 (243)
T 1mv5_A          101 EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK  180 (243)
T ss_dssp             TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHH
T ss_pred             cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence                12223455566665321                1223 34456678888889999999999987644      222


Q ss_pred             ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..... .|..||++||+...+.. +++.+.|
T Consensus       181 ~l~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l  210 (243)
T 1mv5_A          181 ALDSLM-KGRTTLVIAHRLSTIVD-ADKIYFI  210 (243)
T ss_dssp             HHHHHH-TTSEEEEECCSHHHHHH-CSEEEEE
T ss_pred             HHHHhc-CCCEEEEEeCChHHHHh-CCEEEEE
Confidence            212222 37789999999987754 5555433

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.71  E-value=3.6e-08  Score=85.24  Aligned_cols=131  Identities=16%  Similarity=0.137  Sum_probs=81.6

Q ss_pred             HHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe---------EEEE-EeCCCCC----H----------
Q 046889          170 MEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE---------VAMA-VVSQTPS----I----------  222 (333)
Q Consensus       170 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~---------~~wv-~v~~~~~----~----------  222 (333)
                      ...+. ++  +++|+|+||+|||||++.+.+.. +...   +..         .... +++|.+.    .          
T Consensus        25 sl~i~-Ge--~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~  100 (263)
T 2pjz_A           25 NLEVN-GE--KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEEL  100 (263)
T ss_dssp             EEEEC-SS--EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHH
T ss_pred             eEEEC-CE--EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhh
Confidence            33345 66  89999999999999999998765 4210   000         0112 3444331    1          


Q ss_pred             ----HHHHHHHHHHhCCC-CCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcE
Q 046889          223 ----TKIQDEIAGWLGIK-ELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCK  285 (333)
Q Consensus       223 ----~~~~~~i~~~l~~~-~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~  285 (333)
                          ......+++.+++. ....     .+ -+..+-.+.+.|..++-+++||++.+..|.      ..+......   .
T Consensus       101 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---t  177 (263)
T 2pjz_A          101 KGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---E  177 (263)
T ss_dssp             TCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---E
T ss_pred             cchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---c
Confidence                11234566777764 2211     22 344566788999999999999999877542      222122222   7


Q ss_pred             EEEeeCChHHHhhccc-ceEecC
Q 046889          286 FLLTSRSRAACNQMQA-HIVDVR  307 (333)
Q Consensus       286 vivTTr~~~v~~~~~~-~~~~l~  307 (333)
                      ||++||+.+.+..+++ +.+.++
T Consensus       178 viivtHd~~~~~~~~d~~i~~l~  200 (263)
T 2pjz_A          178 GILVTHELDMLNLYKEYKAYFLV  200 (263)
T ss_dssp             EEEEESCGGGGGGCTTSEEEEEE
T ss_pred             EEEEEcCHHHHHHhcCceEEEEE
Confidence            9999999988777777 665443

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.68  E-value=8.2e-08  Score=84.18  Aligned_cols=129  Identities=13%  Similarity=0.123  Sum_probs=75.9

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCeEEEEEeCCCCC-----HHHH----------HHHHHHHhC
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDEVAMAVVSQTPS-----ITKI----------QDEIAGWLG  234 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~~~-----~~~~----------~~~i~~~l~  234 (333)
                      +..++  +++|+|++|+|||||++.+.+..++..   .|... ..+++|.+.     ..+.          ....+..++
T Consensus        61 i~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~-i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~  137 (290)
T 2bbs_A           61 IERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ  137 (290)
T ss_dssp             ECTTC--EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC-EEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE-EEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhC
Confidence            33556  999999999999999999987764321   11111 223444321     1111          111222222


Q ss_pred             CC------C----------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhc-cCCCCCCCcEEEEee
Q 046889          235 IK------E----------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRV-GIPYGNDGCKFLLTS  290 (333)
Q Consensus       235 ~~------~----------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l-~~~~~~~g~~vivTT  290 (333)
                      ..      .          ....+ .+..+..+.+.|..++-+++||++.+..|      +..+ ..... .|..||++|
T Consensus       138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivt  216 (290)
T 2bbs_A          138 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVT  216 (290)
T ss_dssp             CHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEEC
T ss_pred             hHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEe
Confidence            21      0          01233 34456678889999999999999987644      2222 11222 377899999


Q ss_pred             CChHHHhhcccceEec
Q 046889          291 RSRAACNQMQAHIVDV  306 (333)
Q Consensus       291 r~~~v~~~~~~~~~~l  306 (333)
                      |+...+.. ++..+.|
T Consensus       217 Hd~~~~~~-~d~i~~l  231 (290)
T 2bbs_A          217 SKMEHLKK-ADKILIL  231 (290)
T ss_dssp             CCHHHHHH-SSEEEEE
T ss_pred             cCHHHHHc-CCEEEEE
Confidence            99987754 5555433

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.67  E-value=3.2e-08  Score=84.84  Aligned_cols=135  Identities=20%  Similarity=0.247  Sum_probs=79.0

Q ss_pred             HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe----EEEEEeCCCCC-----H-----
Q 046889          168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE----VAMAVVSQTPS-----I-----  222 (333)
Q Consensus       168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~----~~wv~v~~~~~-----~-----  222 (333)
                      .+...+..++  +++|+|++|+|||||++.+.+..++..           ....    ....+++|.+.     +     
T Consensus        27 ~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~  104 (247)
T 2ff7_A           27 NINLSIKQGE--VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIS  104 (247)
T ss_dssp             EEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHT
T ss_pred             eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHh
Confidence            3333445667  999999999999999999987654321           0000    01223344321     1     


Q ss_pred             -------HHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh------h
Q 046889          223 -------TKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L  272 (333)
Q Consensus       223 -------~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~  272 (333)
                             ......+++.+++.                .....+ -+..+..+.+.|..++-+++||++.+..|      +
T Consensus       105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i  184 (247)
T 2ff7_A          105 LANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI  184 (247)
T ss_dssp             TTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence                   11122333333331                012233 34556678889999999999999987744      2


Q ss_pred             hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..+..... .|..||++||+...+.. ++..+.|
T Consensus       185 ~~~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l  216 (247)
T 2ff7_A          185 MRNMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVM  216 (247)
T ss_dssp             HHHHHHHH-TTSEEEEECSSGGGGTT-SSEEEEE
T ss_pred             HHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEE
Confidence            22212222 37789999999987754 5555443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.67  E-value=9e-08  Score=77.85  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 046889          162 RESTMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL  238 (333)
Q Consensus       162 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~  238 (333)
                      ....++.+..++.+   .....+.|+|++|+|||||++.+++.......+.. .++      +..++...+...+.....
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-~~~------~~~~~~~~~~~~~~~~~~   91 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-YFF------DTKDLIFRLKHLMDEGKD   91 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-CEE------EHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-EEE------EHHHHHHHHHHHhcCchH
Confidence            34455555554432   22348999999999999999999998864333322 222      234444444433322111


Q ss_pred             CCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hh-----hhhccCCCCCCCcEEEEeeCCh
Q 046889          239 PDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IE-----LDRVGIPYGNDGCKFLLTSRSR  293 (333)
Q Consensus       239 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-----~~~l~~~~~~~g~~vivTTr~~  293 (333)
                      .         .+.+.+. +..+|||||++..  ..     +..+.......|..+|+||+..
T Consensus        92 ~---------~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           92 T---------KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             S---------HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             H---------HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            1         1222222 5679999999742  22     2222111123477899999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.67  E-value=7.5e-08  Score=82.04  Aligned_cols=130  Identities=13%  Similarity=0.115  Sum_probs=75.5

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCC-----HH-----------HHHHHHHHH-
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPS-----IT-----------KIQDEIAGW-  232 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~-----~~-----------~~~~~i~~~-  232 (333)
                      +..++  +++|+|++|+|||||++.+.+..++...   ++.. ..+++|.+.     +.           .....+++. 
T Consensus        28 i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~-i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~  104 (237)
T 2cbz_A           28 IPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS-VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC  104 (237)
T ss_dssp             ECTTC--EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC-EEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHT
T ss_pred             ECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE-EEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHH
Confidence            44566  9999999999999999999877643211   1100 123344321     00           111222222 


Q ss_pred             -----hCCC----------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccC--CCCCCCcEEEE
Q 046889          233 -----LGIK----------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGI--PYGNDGCKFLL  288 (333)
Q Consensus       233 -----l~~~----------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~--~~~~~g~~viv  288 (333)
                           ++..          .....+ -+..+-.+.+.|..++-+++||++.+..|.      ..+..  .....|..||+
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tvii  184 (237)
T 2cbz_A          105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL  184 (237)
T ss_dssp             TCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEE
T ss_pred             hhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence                 2210          111223 344566788888999999999999877442      22221  11123788999


Q ss_pred             eeCChHHHhhcccceEec
Q 046889          289 TSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       289 TTr~~~v~~~~~~~~~~l  306 (333)
                      +||+...+. .++..+.|
T Consensus       185 vtH~~~~~~-~~d~v~~l  201 (237)
T 2cbz_A          185 VTHSMSYLP-QVDVIIVM  201 (237)
T ss_dssp             ECSCSTTGG-GSSEEEEE
T ss_pred             EecChHHHH-hCCEEEEE
Confidence            999988765 35555444

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.67  E-value=8.7e-09  Score=89.98  Aligned_cols=142  Identities=12%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc--------CCC-----------eEEEEEeCCC--
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK--------MFD-----------EVAMAVVSQT--  219 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------~f~-----------~~~wv~v~~~--  219 (333)
                      |....++.+...+..++  +++|+|+||+|||||++.+.+..++..        ...           .+.++  +|.  
T Consensus        32 ~~~~vL~~isl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v--~Q~~~  107 (279)
T 2ihy_A           32 QGKTILKKISWQIAKGD--KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFV--SHSLL  107 (279)
T ss_dssp             TTEEEEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEE--CHHHH
T ss_pred             CCEEEEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEE--EcCcc
Confidence            43334445555555677  999999999999999999987654321        000           01122  111  


Q ss_pred             --C----CH----------------------HHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeC
Q 046889          220 --P----SI----------------------TKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDD  265 (333)
Q Consensus       220 --~----~~----------------------~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDd  265 (333)
                        +    ++                      ......+++.+++.....     .+ -+..+..+.+.|..++-+|+||+
T Consensus       108 ~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDE  187 (279)
T 2ihy_A          108 EKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE  187 (279)
T ss_dssp             TTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred             cccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence              0    11                      112345566666642211     22 34456678888889999999999


Q ss_pred             CCCchhh------hhccCCCCCCCcEE--EEeeCChHHHhhcccceEec
Q 046889          266 LWVQIEL------DRVGIPYGNDGCKF--LLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       266 v~~~~~~------~~l~~~~~~~g~~v--ivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.+..|.      ..+.......|..|  |++||+.+.+..++++.+.|
T Consensus       188 Pts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l  236 (279)
T 2ihy_A          188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLL  236 (279)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEE
T ss_pred             CccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEE
Confidence            9877442      22212222226668  99999998877666666433

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.65  E-value=6.2e-08  Score=93.51  Aligned_cols=130  Identities=18%  Similarity=0.254  Sum_probs=83.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-CC-eEEEEEeCCCC------CHHH--------------HHHHHHHH
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-FD-EVAMAVVSQTP------SITK--------------IQDEIAGW  232 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~-~~~wv~v~~~~------~~~~--------------~~~~i~~~  232 (333)
                      .++  +++|+|+||+|||||++.+.+..++... .. .....+++|..      ++.+              ....+++.
T Consensus       381 ~Ge--i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~  458 (607)
T 3bk7_A          381 KGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP  458 (607)
T ss_dssp             TTC--EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence            355  9999999999999999999987654321 10 11123344432      1111              12345666


Q ss_pred             hCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCC-CCCcEEEEeeCChHHHhhc
Q 046889          233 LGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYG-NDGCKFLLTSRSRAACNQM  299 (333)
Q Consensus       233 l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~  299 (333)
                      +++.....     .+ -+.....|.+.|..++-+|+||++.+..|...      +...+. ..|..||++||+...+..+
T Consensus       459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~  538 (607)
T 3bk7_A          459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV  538 (607)
T ss_dssp             HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            66643222     22 34556678899999999999999998755332      212221 2367899999999998888


Q ss_pred             ccceEec
Q 046889          300 QAHIVDV  306 (333)
Q Consensus       300 ~~~~~~l  306 (333)
                      +++.+.|
T Consensus       539 adrv~vl  545 (607)
T 3bk7_A          539 SDRLIVF  545 (607)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEE
Confidence            7777444

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.65  E-value=1.1e-07  Score=91.73  Aligned_cols=131  Identities=10%  Similarity=0.140  Sum_probs=83.3

Q ss_pred             hcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-C-------------CCe--------------EEEEEeCCCC-----
Q 046889          174 KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-M-------------FDE--------------VAMAVVSQTP-----  220 (333)
Q Consensus       174 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~-------------f~~--------------~~wv~v~~~~-----  220 (333)
                      ..|+  +++|+|+||+|||||++.+.+..++.. .             |..              ...+...+..     
T Consensus       101 ~~Ge--i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (608)
T 3j16_B          101 RPGQ--VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR  178 (608)
T ss_dssp             CTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred             CCCC--EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence            3466  999999999999999999987643321 1             100              0000111110     


Q ss_pred             ------------------CHHHHHHHHHHHhCCCC-----CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh----
Q 046889          221 ------------------SITKIQDEIAGWLGIKE-----LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL----  272 (333)
Q Consensus       221 ------------------~~~~~~~~i~~~l~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----  272 (333)
                                        ........+++.+++..     ....+ .+.+.-.|.+.|..++-+++||++.+..+.    
T Consensus       179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~  258 (608)
T 3j16_B          179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRL  258 (608)
T ss_dssp             HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred             hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHH
Confidence                              01134556777887752     22233 345566788999999999999999877542    


Q ss_pred             --hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 --DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 --~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                        ..+...+...|..||++||+...+..+++..+.|
T Consensus       259 ~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl  294 (608)
T 3j16_B          259 NAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII  294 (608)
T ss_dssp             HHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              2222233344778999999999988887777444

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.64  E-value=3.1e-07  Score=82.88  Aligned_cols=163  Identities=10%  Similarity=0.085  Sum_probs=88.4

Q ss_pred             ccccccccchHHHHHHHHHHh-hcCCceEEEEEcCCCCcHHHHHHHHHHHHH-hhcC---CCeE----------------
Q 046889          153 SEGFYNFKSRESTMKDIMEAM-KDEKVSIIGICGRGGIGKTTLVKEIQKQAK-EKKM---FDEV----------------  211 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~~---f~~~----------------  211 (333)
                      |.....++|++..++.+..++ ..++...+.|+||+|+|||||++.+.+... ....   ++..                
T Consensus        10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~   89 (354)
T 1sxj_E           10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS   89 (354)
T ss_dssp             CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred             CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence            344567899999999999988 666544599999999999999999988532 1110   0000                


Q ss_pred             --EEEEeCCC-CC--HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch-----hhhhccCCCCC
Q 046889          212 --AMAVVSQT-PS--ITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI-----ELDRVGIPYGN  281 (333)
Q Consensus       212 --~wv~v~~~-~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~l~~~~~~  281 (333)
                        .++.+... ..  .....++++..+.......    ... .+ ..+..++.+++||++....     .+... +....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~-le~~~  162 (354)
T 1sxj_E           90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD----FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRT-MEKYS  162 (354)
T ss_dssp             CSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHH-HHHST
T ss_pred             ccceEEecHhhcCCcchHHHHHHHHHHHHhcccc----ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHH-HHhhc
Confidence              01111110 00  0011223333322110000    000 00 0034477899999997641     12222 11122


Q ss_pred             CCcEEEEeeCChHH-Hhhccc--ceEecCCCCHHHHHHHHHhhc
Q 046889          282 DGCKFLLTSRSRAA-CNQMQA--HIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       282 ~g~~vivTTr~~~v-~~~~~~--~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      .++.+|++||+..- ...+..  ..+.+.+++.++....+.+.+
T Consensus       163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~  206 (354)
T 1sxj_E          163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVV  206 (354)
T ss_dssp             TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence            36789999987542 111222  338999999999999988765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.63  E-value=3.5e-08  Score=94.14  Aligned_cols=137  Identities=17%  Similarity=0.225  Sum_probs=85.5

Q ss_pred             HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-C-----------CCe--------------EEEEEeCCCC
Q 046889          167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-M-----------FDE--------------VAMAVVSQTP  220 (333)
Q Consensus       167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~-----------f~~--------------~~wv~v~~~~  220 (333)
                      ..+. .+..++  +++|+|+||+|||||++.+.+...+.. .           +..              .....+.+..
T Consensus        39 ~~vs-~i~~Ge--~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~  115 (538)
T 1yqt_A           39 YRLP-VVKEGM--VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV  115 (538)
T ss_dssp             ECCC-CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred             cCcC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence            3344 455677  999999999999999999987543211 0           100              0001112211


Q ss_pred             ---------CHHH---------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh---
Q 046889          221 ---------SITK---------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD---  273 (333)
Q Consensus       221 ---------~~~~---------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---  273 (333)
                               +..+         ....+++.+++.....     .+ -+.....|.+.|..++-+|+||++.+..|..   
T Consensus       116 ~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~  195 (538)
T 1yqt_A          116 DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL  195 (538)
T ss_dssp             GGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred             hhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence                     1111         2346777888753222     22 3456678999999999999999999875522   


Q ss_pred             ---hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ---RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ---~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         .+...+...|..||++||+...+..++++.+.+
T Consensus       196 ~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl  231 (538)
T 1yqt_A          196 NAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV  231 (538)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence               221222224778999999999888777776443

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.63  E-value=1.4e-07  Score=82.04  Aligned_cols=139  Identities=18%  Similarity=0.263  Sum_probs=80.3

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe----EEEEEeCCCCC-----H--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE----VAMAVVSQTPS-----I--  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~----~~wv~v~~~~~-----~--  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+..++..           .+..    ....+++|.+.     +  
T Consensus        34 vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e  111 (271)
T 2ixe_A           34 VLQGLTFTLYPGK--VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE  111 (271)
T ss_dssp             CEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH
T ss_pred             eeEeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHH
Confidence            3444444455666  999999999999999999987654321           0000    00123333321     1  


Q ss_pred             ------------HHH--------HHHHHHHh--CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh---
Q 046889          223 ------------TKI--------QDEIAGWL--GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE---  271 (333)
Q Consensus       223 ------------~~~--------~~~i~~~l--~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---  271 (333)
                                  ..+        +..++..+  ++.     .....+ -+..+..|.+.|..++-+|+||++.+..|   
T Consensus       112 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~  191 (271)
T 2ixe_A          112 NIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN  191 (271)
T ss_dssp             HHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred             HHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence                        110        11223333  221     111223 34456678889999999999999987744   


Q ss_pred             ---hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 ---LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ---~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         +..+..... ..|..||++||+...+.. ++..+.|
T Consensus       192 ~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l  229 (271)
T 2ixe_A          192 QLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFL  229 (271)
T ss_dssp             HHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEE
T ss_pred             HHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEE
Confidence               222222222 237889999999988764 5555444

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.61  E-value=5e-07  Score=84.12  Aligned_cols=130  Identities=16%  Similarity=0.161  Sum_probs=78.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ  257 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k  257 (333)
                      ...+.|+|++|+|||||++.+++.......-...+++..      ..+...+...+...     .    ...+...+..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~~~  194 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYRKK  194 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----C----HHHHHHHHTTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----c----HHHHHHHhcCC
Confidence            457899999999999999999988753311112333332      23344444443321     1    12234444446


Q ss_pred             ceEEEEeCCCCchh-------hhhccCCCCCCCcEEEEeeCChH---------HHhhcccc-eEecCCCCHHHHHHHHHh
Q 046889          258 RVLVILDDLWVQIE-------LDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQAH-IVDVRTLTEEESWRSAEG  320 (333)
Q Consensus       258 ~~LlVlDdv~~~~~-------~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~~-~~~l~~L~~~e~~~lf~~  320 (333)
                      ..+|+|||+.....       +..+.......|..||+||++..         +..++... .+.+.+++.++...++.+
T Consensus       195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~  274 (440)
T 2z4s_A          195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARK  274 (440)
T ss_dssp             CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHH
T ss_pred             CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHH
Confidence            78999999964421       11111111344778999998732         23334332 388999999999999988


Q ss_pred             hc
Q 046889          321 KR  322 (333)
Q Consensus       321 ~a  322 (333)
                      .+
T Consensus       275 ~~  276 (440)
T 2z4s_A          275 ML  276 (440)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.61  E-value=2.8e-08  Score=94.58  Aligned_cols=128  Identities=16%  Similarity=0.245  Sum_probs=79.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCC------CHHHHH---------------HHHHHHhCC
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTP------SITKIQ---------------DEIAGWLGI  235 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~------~~~~~~---------------~~i~~~l~~  235 (333)
                      +++|+|+||+|||||++.+++..++...   +.......+++..      ++.+.+               ..+++.+++
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l  375 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL  375 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC
Confidence            8999999999999999999987654321   1111122333321      112211               222333333


Q ss_pred             CCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCC-CCCCcEEEEeeCChHHHhhcccc
Q 046889          236 KELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPY-GNDGCKFLLTSRSRAACNQMQAH  302 (333)
Q Consensus       236 ~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~-~~~g~~vivTTr~~~v~~~~~~~  302 (333)
                      ....     ..+ -+.+...|.+.|..++-+|+||++.+..|...      +...+ ...|..||++||+.+.+..++++
T Consensus       376 ~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDr  455 (538)
T 3ozx_A          376 HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR  455 (538)
T ss_dssp             GGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred             HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            2111     112 34556778999999999999999998755322      21222 22477899999999999888887


Q ss_pred             eEecC
Q 046889          303 IVDVR  307 (333)
Q Consensus       303 ~~~l~  307 (333)
                      .+.|.
T Consensus       456 i~vl~  460 (538)
T 3ozx_A          456 IIVFK  460 (538)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            75443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.60  E-value=8.8e-07  Score=77.39  Aligned_cols=149  Identities=16%  Similarity=0.172  Sum_probs=86.2

Q ss_pred             cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889          156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI  222 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  222 (333)
                      ...++|.+..++.|...+..             .....+.|+|++|+|||+||+.+.+....     ..+.+..+.-.. 
T Consensus        16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~~-   89 (285)
T 3h4m_A           16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELVK-   89 (285)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC-
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHHH-
Confidence            45688999998888877632             23457899999999999999999877531     112222211100 


Q ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc----------------hhhhhccC----CCCCC
Q 046889          223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ----------------IELDRVGI----PYGND  282 (333)
Q Consensus       223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~----~~~~~  282 (333)
                                    .............+.......+.+|+|||+...                ..+..+..    .....
T Consensus        90 --------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~  155 (285)
T 3h4m_A           90 --------------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG  155 (285)
T ss_dssp             --------------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred             --------------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence                          000101111222233333456789999998642                11111111    11223


Q ss_pred             CcEEEEeeCChHHHh-h-c---c-cceEecCCCCHHHHHHHHHhhccc
Q 046889          283 GCKFLLTSRSRAACN-Q-M---Q-AHIVDVRTLTEEESWRSAEGKRRV  324 (333)
Q Consensus       283 g~~vivTTr~~~v~~-~-~---~-~~~~~l~~L~~~e~~~lf~~~a~~  324 (333)
                      +..||.||....... . .   . ...+.+.+.+.++..++|......
T Consensus       156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~  203 (285)
T 3h4m_A          156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK  203 (285)
T ss_dssp             SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence            567777887654311 0 1   1 123889999999999999887643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.59  E-value=4.1e-08  Score=93.60  Aligned_cols=130  Identities=17%  Similarity=0.249  Sum_probs=80.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-CC-eEEEEEeCCCC------CHHHHH--------------HHHHHH
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-FD-EVAMAVVSQTP------SITKIQ--------------DEIAGW  232 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~-~~~wv~v~~~~------~~~~~~--------------~~i~~~  232 (333)
                      .++  +++|+|+||+|||||++.+++..++... .. .....+++|..      ++.+.+              ..+++.
T Consensus       311 ~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~  388 (538)
T 1yqt_A          311 KGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP  388 (538)
T ss_dssp             TTC--EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred             CCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence            355  9999999999999999999987654321 10 11123344432      222222              122223


Q ss_pred             hCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhh------ccCCCC-CCCcEEEEeeCChHHHhhc
Q 046889          233 LGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDR------VGIPYG-NDGCKFLLTSRSRAACNQM  299 (333)
Q Consensus       233 l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~------l~~~~~-~~g~~vivTTr~~~v~~~~  299 (333)
                      +++....     ..+ -+.....|.+.|..++-+|+||++.+..|...      +...+. ..|..||++||+.+.+..+
T Consensus       389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~  468 (538)
T 1yqt_A          389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV  468 (538)
T ss_dssp             TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred             cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            3332111     122 34556678899999999999999998755332      211111 2377899999999998888


Q ss_pred             ccceEec
Q 046889          300 QAHIVDV  306 (333)
Q Consensus       300 ~~~~~~l  306 (333)
                      +++.+.|
T Consensus       469 ~drv~vl  475 (538)
T 1yqt_A          469 SDRLMVF  475 (538)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEE
Confidence            8777444

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.59  E-value=3.5e-07  Score=85.17  Aligned_cols=147  Identities=15%  Similarity=0.193  Sum_probs=87.4

Q ss_pred             ccccccccchHHHH---HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCC-CCHHHHHHH
Q 046889          153 SEGFYNFKSRESTM---KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQT-PSITKIQDE  228 (333)
Q Consensus       153 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~  228 (333)
                      |.....++|.+..+   ..|...+..+....+.|+|+.|+||||||+.+.+...  ..     ++.++.. ..... ++.
T Consensus        22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~--~~-----f~~l~a~~~~~~~-ir~   93 (447)
T 3pvs_A           22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN--AD-----VERISAVTSGVKE-IRE   93 (447)
T ss_dssp             CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT--CE-----EEEEETTTCCHHH-HHH
T ss_pred             CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC--CC-----eEEEEeccCCHHH-HHH
Confidence            44567789999888   7888888888877899999999999999999998763  11     2222221 22222 112


Q ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEE-eeCChHH--Hhhccc--
Q 046889          229 IAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLL-TSRSRAA--CNQMQA--  301 (333)
Q Consensus       229 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~viv-TTr~~~v--~~~~~~--  301 (333)
                      ++...                .......++.+|+|||+...  .....+..........+|. ||.+...  ...+-.  
T Consensus        94 ~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~  157 (447)
T 3pvs_A           94 AIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRA  157 (447)
T ss_dssp             HHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTE
T ss_pred             HHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCce
Confidence            11110                01112357889999999754  2222221111122233444 5555432  111222  


Q ss_pred             ceEecCCCCHHHHHHHHHhhcc
Q 046889          302 HIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       302 ~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      ..+.+.+++.++...++.+..-
T Consensus       158 ~v~~l~~l~~edi~~il~~~l~  179 (447)
T 3pvs_A          158 RVYLLKSLSTEDIEQVLTQAME  179 (447)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHH
T ss_pred             eEEeeCCcCHHHHHHHHHHHHH
Confidence            2388999999999999987753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.58  E-value=1e-07  Score=91.86  Aligned_cols=129  Identities=13%  Similarity=0.211  Sum_probs=82.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC--eEEEEEeCCCC------CH--------------HHHHHHHHHHhCCC
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFD--EVAMAVVSQTP------SI--------------TKIQDEIAGWLGIK  236 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~~------~~--------------~~~~~~i~~~l~~~  236 (333)
                      .+++|+|+||+|||||++.+.+..++...-.  ..-...+++..      +.              ......+++.+++.
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~  458 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID  458 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence            3899999999999999999998765433211  11112222221      11              12334556666654


Q ss_pred             CC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCC-CCCCcEEEEeeCChHHHhhcccce
Q 046889          237 EL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPY-GNDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       237 ~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      ..     ...+ -+.+...|.+.|..++-+|+||++.+..|..      .+...+ ...|..||++||+.+.+..++++.
T Consensus       459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrv  538 (608)
T 3j16_B          459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKV  538 (608)
T ss_dssp             TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEE
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence            22     1223 3455677899999999999999998875532      221222 123778999999999988888877


Q ss_pred             EecC
Q 046889          304 VDVR  307 (333)
Q Consensus       304 ~~l~  307 (333)
                      +.+.
T Consensus       539 ivl~  542 (608)
T 3j16_B          539 IVFE  542 (608)
T ss_dssp             EECE
T ss_pred             EEEe
Confidence            5554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.57  E-value=5.1e-07  Score=79.87  Aligned_cols=149  Identities=12%  Similarity=0.136  Sum_probs=83.6

Q ss_pred             cccchHHHHHHHHHHhh---------------cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889          158 NFKSRESTMKDIMEAMK---------------DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI  222 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  222 (333)
                      .++|.+..++.|...+.               ......+.|+|+.|+|||+||+.+.+............++.+...   
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---  108 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD---  108 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence            47888877777765543               223346899999999999999999888754333222223333311   


Q ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc-----------hhhhhcc--CCCCCCCcEEEEe
Q 046889          223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ-----------IELDRVG--IPYGNDGCKFLLT  289 (333)
Q Consensus       223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~--~~~~~~g~~vivT  289 (333)
                               .+.. .............+...   +..+|+|||+...           ..+..+.  +.....+..||+|
T Consensus       109 ---------~l~~-~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~  175 (309)
T 3syl_A          109 ---------DLVG-QYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA  175 (309)
T ss_dssp             ---------GTCC-SSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred             ---------Hhhh-hcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence                     0000 11111111111112211   4569999999733           1122221  1112335677888


Q ss_pred             eCChH----------HHhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889          290 SRSRA----------ACNQMQAHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       290 Tr~~~----------v~~~~~~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      |....          +..++. ..+.+.+++.++...++.+.+.
T Consensus       176 ~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~  218 (309)
T 3syl_A          176 GYADRMENFFQSNPGFRSRIA-HHIEFPDYSDEELFEIAGHMLD  218 (309)
T ss_dssp             ECHHHHHHHHHHSTTHHHHEE-EEEEECCCCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHhhCHHHHHhCC-eEEEcCCcCHHHHHHHHHHHHH
Confidence            76432          222221 3489999999999999977653

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.55  E-value=2.2e-07  Score=82.36  Aligned_cols=151  Identities=11%  Similarity=0.146  Sum_probs=89.2

Q ss_pred             cccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046889          154 EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL  233 (333)
Q Consensus       154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l  233 (333)
                      .....++|++..++.+..++..+..+.+.++|+.|+|||++++.+.........-...+.+..+......          
T Consensus        14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~----------   83 (319)
T 2chq_A           14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID----------   83 (319)
T ss_dssp             SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT----------
T ss_pred             CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH----------
Confidence            3446689999999999999887765569999999999999999998875311100011222222211100          


Q ss_pred             CCCCCCCCCHHHHHHHHHHH--H-ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-Hhhccc--ce
Q 046889          234 GIKELPDNDELVRASLLCKR--I-EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-CNQMQA--HI  303 (333)
Q Consensus       234 ~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-~~~~~~--~~  303 (333)
                              ........+...  + .+++.++|+||+...  .....+.  +.....++.+|+||....- ...+..  ..
T Consensus        84 --------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~  155 (319)
T 2chq_A           84 --------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV  155 (319)
T ss_dssp             --------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred             --------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence                    000111111111  1 246789999998654  2222221  2222346778888876542 111111  24


Q ss_pred             EecCCCCHHHHHHHHHhhc
Q 046889          304 VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       304 ~~l~~L~~~e~~~lf~~~a  322 (333)
                      +.+.+++.++...++.+.+
T Consensus       156 i~~~~~~~~~~~~~l~~~~  174 (319)
T 2chq_A          156 FRFKPVPKEAMKKRLLEIC  174 (319)
T ss_dssp             EECCCCCHHHHHHHHHHHH
T ss_pred             EEecCCCHHHHHHHHHHHH
Confidence            8999999999999888665

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.55  E-value=1e-07  Score=82.35  Aligned_cols=134  Identities=11%  Similarity=0.102  Sum_probs=76.5

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCe------------EEEEEeCCCCC-----H-------
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--FDE------------VAMAVVSQTPS-----I-------  222 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~------------~~wv~v~~~~~-----~-------  222 (333)
                      +...+..++  +++|+|++|+|||||++.+.+.....+.  ++.            ....+++|.+.     +       
T Consensus        39 vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~  116 (260)
T 2ghi_A           39 INFFIPSGT--TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG  116 (260)
T ss_dssp             EEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTT
T ss_pred             eEEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhcc
Confidence            333344566  9999999999999999999876432110  000            00122333321     0       


Q ss_pred             -----HHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hh
Q 046889          223 -----TKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DR  274 (333)
Q Consensus       223 -----~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~  274 (333)
                           ..-....++.+++.                .....+ -+..+-.+.+.|..++-+++||++.+..|.      ..
T Consensus       117 ~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~  196 (260)
T 2ghi_A          117 KLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK  196 (260)
T ss_dssp             CTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence                 11122333333321                011223 344566788888899999999999877442      22


Q ss_pred             ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          275 VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       275 l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +...... |..||++||+...+.. +++.+.|
T Consensus       197 ~l~~l~~-~~tviivtH~~~~~~~-~d~i~~l  226 (260)
T 2ghi_A          197 AVEDLRK-NRTLIIIAHRLSTISS-AESIILL  226 (260)
T ss_dssp             HHHHHTT-TSEEEEECSSGGGSTT-CSEEEEE
T ss_pred             HHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEE
Confidence            2122222 6789999999887654 5554433

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.52  E-value=6.2e-08  Score=93.50  Aligned_cols=138  Identities=20%  Similarity=0.243  Sum_probs=85.1

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-C-----------CCe--------------EEEEEeCCC
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-M-----------FDE--------------VAMAVVSQT  219 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~-----------f~~--------------~~wv~v~~~  219 (333)
                      +..+. .+..|+  +++|+|+||+|||||++.+.+...+.. .           |..              .....+.+.
T Consensus       108 l~~vs-~i~~Ge--~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~  184 (607)
T 3bk7_A          108 LYRLP-IVKDGM--VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY  184 (607)
T ss_dssp             EECCC-CCCTTS--EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred             eCCCC-CCCCCC--EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence            34444 455667  999999999999999999986543211 0           100              000111111


Q ss_pred             C---------CHHH---------HHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          220 P---------SITK---------IQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       220 ~---------~~~~---------~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                      .         +..+         ....+++.+++....     ..+ -+...-.|.+.|..++-+|+||++.+..|..  
T Consensus       185 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~  264 (607)
T 3bk7_A          185 VDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQR  264 (607)
T ss_dssp             GGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred             hhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence            0         1111         234677777775321     122 3455677999999999999999999875532  


Q ss_pred             ----hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 ----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 ----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          .+...+...|..||++||+...+..+++..+.|
T Consensus       265 ~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl  301 (607)
T 3bk7_A          265 LKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV  301 (607)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEE
Confidence                221222223778999999999988777766444

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.52  E-value=3.9e-08  Score=79.49  Aligned_cols=56  Identities=9%  Similarity=0.000  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHccCceEEEEeCCCCchhhh----------------------hccCCCCCCCcEEEEeeCChHHHhhc
Q 046889          244 LVRASLLCKRIEKQRVLVILDDLWVQIELD----------------------RVGIPYGNDGCKFLLTSRSRAACNQM  299 (333)
Q Consensus       244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----------------------~l~~~~~~~g~~vivTTr~~~v~~~~  299 (333)
                      ......+.+.+..++.+++||++.+..+..                      .+.......|..+|++||+.+.+..+
T Consensus        88 ~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A           88 RKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV  165 (171)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred             HHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence            344567888888999999999997654322                      12222223388899999999887654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.52  E-value=2.1e-07  Score=88.57  Aligned_cols=124  Identities=16%  Similarity=0.232  Sum_probs=77.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcC--------------CC--------------eEEEEEeCCCC---------C
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKM--------------FD--------------EVAMAVVSQTP---------S  221 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--------------f~--------------~~~wv~v~~~~---------~  221 (333)
                      .+++|+|+||+|||||++.+.+...+...              |.              ........+..         .
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT  105 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSB
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCc
Confidence            39999999999999999999875432110              00              00011111110         1


Q ss_pred             HHH---------HHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCC
Q 046889          222 ITK---------IQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYG  280 (333)
Q Consensus       222 ~~~---------~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~  280 (333)
                      ...         ....+++.+++.....     .+ .+.+.-.|.+.|..++-+|+||++.+..+..      .+...+.
T Consensus       106 v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~  185 (538)
T 3ozx_A          106 VNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL  185 (538)
T ss_dssp             HHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence            111         2345677777642222     22 3455677899999999999999998775422      2222223


Q ss_pred             CCCcEEEEeeCChHHHhhcccce
Q 046889          281 NDGCKFLLTSRSRAACNQMQAHI  303 (333)
Q Consensus       281 ~~g~~vivTTr~~~v~~~~~~~~  303 (333)
                      . |..||++||+...+..+++..
T Consensus       186 ~-g~tii~vsHdl~~~~~~~d~i  207 (538)
T 3ozx_A          186 K-NKYVIVVDHDLIVLDYLTDLI  207 (538)
T ss_dssp             T-TSEEEEECSCHHHHHHHCSEE
T ss_pred             C-CCEEEEEEeChHHHHhhCCEE
Confidence            3 778999999999888777766

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.51  E-value=5.4e-06  Score=71.28  Aligned_cols=147  Identities=14%  Similarity=0.093  Sum_probs=79.4

Q ss_pred             cccccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          156 FYNFKSRESTMKDIMEAMK---D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ...++|.+..++.+...+.   .         .....+.|+|+.|+|||+||+.+.+...  ..   .+.+..+.-.+  
T Consensus         5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~~~~~~~~~--   77 (262)
T 2qz4_A            5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VP---FLAMAGAEFVE--   77 (262)
T ss_dssp             TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CC---EEEEETTTTSS--
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEechHHHHh--
Confidence            3457888777766655432   1         2234688999999999999999988653  11   22233222111  


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch-----------------hhhhccC---CC-CCC
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI-----------------ELDRVGI---PY-GND  282 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~---~~-~~~  282 (333)
                                   .............+.......+.+|+|||+....                 .+..+..   .. ...
T Consensus        78 -------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~  144 (262)
T 2qz4_A           78 -------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD  144 (262)
T ss_dssp             -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred             -------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence                         0001111112222333334467999999997530                 1112211   11 122


Q ss_pred             CcEEEEeeCChHHHh-hcc-----cceEecCCCCHHHHHHHHHhhc
Q 046889          283 GCKFLLTSRSRAACN-QMQ-----AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       283 g~~vivTTr~~~v~~-~~~-----~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      +..||.||....... .+.     ...+.+...+.++..+++.+.+
T Consensus       145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~  190 (262)
T 2qz4_A          145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL  190 (262)
T ss_dssp             CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHH
T ss_pred             CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence            556777776654311 111     1237888999999999988765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.48  E-value=2e-07  Score=82.20  Aligned_cols=138  Identities=14%  Similarity=0.169  Sum_probs=78.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI-------  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~-------  222 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+...   ++.            .....++|.+.+       
T Consensus        69 vL~~isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~e  146 (306)
T 3nh6_A           69 TLQDVSFTVMPGQ--TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIAD  146 (306)
T ss_dssp             EEEEEEEEECTTC--EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHH
T ss_pred             eeeeeeEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHH
Confidence            3444444455667  9999999999999999999876543210   000            012233443210       


Q ss_pred             ----------HHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889          223 ----------TKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---  272 (333)
Q Consensus       223 ----------~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---  272 (333)
                                ..-....++..+..                .....+ -+..+-.|.+.|-.++-+|+||++.+..|.   
T Consensus       147 Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~  226 (306)
T 3nh6_A          147 NIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE  226 (306)
T ss_dssp             HHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHH
T ss_pred             HHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence                      11122222222221                011223 345566788888889999999999877442   


Q ss_pred             ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         ........ .+..+|++||+...+.. ++..+.|
T Consensus       227 ~~i~~~l~~l~-~~~Tvi~itH~l~~~~~-aD~i~vl  261 (306)
T 3nh6_A          227 RAIQASLAKVC-ANRTTIVVAHRLSTVVN-ADQILVI  261 (306)
T ss_dssp             HHHHHHHHHHH-TTSEEEEECCSHHHHHT-CSEEEEE
T ss_pred             HHHHHHHHHHc-CCCEEEEEEcChHHHHc-CCEEEEE
Confidence               11111111 25679999999998765 5555444

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.47  E-value=4e-07  Score=91.48  Aligned_cols=140  Identities=16%  Similarity=0.194  Sum_probs=87.9

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC---eEEEEEeCCCC-------CH-------
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD---EVAMAVVSQTP-------SI-------  222 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~---~~~wv~v~~~~-------~~-------  222 (333)
                      ||....++++...+..|+  +++|+|+||+|||||++.+.+-. + ..+.   ....+++.+..       +.       
T Consensus       445 yg~~~iL~~vsl~I~~Ge--~v~LiGpNGsGKSTLLk~LagG~-i-~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~  520 (986)
T 2iw3_A          445 YGAKILLNKTQLRLKRAR--RYGICGPNGCGKSTLMRAIANGQ-V-DGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFES  520 (986)
T ss_dssp             ETTEEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHHTC-S-TTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTT
T ss_pred             ECCEEeEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCC-c-CCCccccceeEEEEcccccccccCCcHHHHHHHh
Confidence            343334445555555677  99999999999999999998421 1 0111   01123344321       11       


Q ss_pred             ----HHHHHHHHHHhCCC------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcE
Q 046889          223 ----TKIQDEIAGWLGIK------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCK  285 (333)
Q Consensus       223 ----~~~~~~i~~~l~~~------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~  285 (333)
                          ......+++.+++.      .....+ .+..+-.|.+.|..++-+|+||++.+..|.      ..+...   .|..
T Consensus       521 ~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~t  597 (986)
T 2iw3_A          521 GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGIT  597 (986)
T ss_dssp             CSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSE
T ss_pred             hcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCE
Confidence                22345567777763      112233 345566788899999999999999887542      222122   4778


Q ss_pred             EEEeeCChHHHhhcccceEec
Q 046889          286 FLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       286 vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ||++||+...+..++++.+.|
T Consensus       598 vIivSHdl~~l~~~adrii~L  618 (986)
T 2iw3_A          598 SITISHDSVFLDNVCEYIINY  618 (986)
T ss_dssp             EEEECSCHHHHHHHCSEEEEE
T ss_pred             EEEEECCHHHHHHhCCEEEEE
Confidence            999999999988777776444

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.46  E-value=3.2e-07  Score=74.47  Aligned_cols=49  Identities=14%  Similarity=0.267  Sum_probs=42.5

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ....++|++..++.+...+..+....+.|+|+.|+|||+|++.+.....
T Consensus        20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3457899999999999998776666789999999999999999988764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.43  E-value=3.1e-07  Score=88.60  Aligned_cols=140  Identities=15%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH-----
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI-----  222 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~-----  222 (333)
                      ...++++...+..|+  +++|+|++|+|||||++.+.+..++...   ++.            .....++|++..     
T Consensus       356 ~~~l~~i~l~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv  433 (582)
T 3b5x_A          356 KPALSHVSFSIPQGK--TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI  433 (582)
T ss_pred             ccccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccH
Confidence            456777777777788  9999999999999999999876543211   000            012233333210     


Q ss_pred             -------------HHHHHHHHHHhCCCC----------------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          223 -------------TKIQDEIAGWLGIKE----------------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       223 -------------~~~~~~i~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                                   .+-..+.++.++..+                ....+ .+.++-.+.+.+-.++-+++|||+.+..|.
T Consensus       434 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~  513 (582)
T 3b5x_A          434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT  513 (582)
T ss_pred             HHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence                         112223333333210                01122 344556788888899999999999877442


Q ss_pred             ------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 ------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                            ........ .|..+|++||+...... +++.+.+
T Consensus       514 ~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l  551 (582)
T 3b5x_A          514 ESERAIQAALDELQ-KNKTVLVIAHRLSTIEQ-ADEILVV  551 (582)
T ss_pred             HHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh-CCEEEEE
Confidence                  22212222 27789999999887763 5555444

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.42  E-value=4.1e-07  Score=77.09  Aligned_cols=140  Identities=12%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             ccccch---HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046889          157 YNFKSR---ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL  233 (333)
Q Consensus       157 ~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l  233 (333)
                      ..|+++   ...++.+..+...+....+.|+|+.|+|||||++.+.+.....  .....|+..+....      .+..  
T Consensus        28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~------~~~~--   97 (242)
T 3bos_A           28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHAS------ISTA--   97 (242)
T ss_dssp             TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGG------SCGG--
T ss_pred             hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHH------HHHH--
Confidence            445552   4666777776665455689999999999999999999887643  22344555432111      0000  


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh----hhhc---cCCCCCCCc-EEEEeeCChH---------HH
Q 046889          234 GIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE----LDRV---GIPYGNDGC-KFLLTSRSRA---------AC  296 (333)
Q Consensus       234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l---~~~~~~~g~-~vivTTr~~~---------v~  296 (333)
                                      ..+.+ .++.+|++||+.....    ...+   .......+. .+|+||+...         +.
T Consensus        98 ----------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~  160 (242)
T 3bos_A           98 ----------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLV  160 (242)
T ss_dssp             ----------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHH
T ss_pred             ----------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhh
Confidence                            00011 3567999999865421    1111   111111233 4777776332         22


Q ss_pred             hhccc-ceEecCCCCHHHHHHHHHhhcc
Q 046889          297 NQMQA-HIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       297 ~~~~~-~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      .++.. ..+.+.+++.++..+++.+.+.
T Consensus       161 ~r~~~~~~i~l~~~~~~~~~~~l~~~~~  188 (242)
T 3bos_A          161 SRMHWGLTYQLQPMMDDEKLAALQRRAA  188 (242)
T ss_dssp             HHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred             hHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence            22221 3489999999999999988653

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.42  E-value=3.5e-07  Score=82.39  Aligned_cols=163  Identities=10%  Similarity=0.084  Sum_probs=89.4

Q ss_pred             cccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC-eEEEEEeCCCCCHHHHHHHHHHH
Q 046889          154 EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD-EVAMAVVSQTPSITKIQDEIAGW  232 (333)
Q Consensus       154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~  232 (333)
                      .....++|++..++.+..++..+....+.|+|++|+||||+++.+.+.......+. ....+..+....... +++.+..
T Consensus        34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  112 (353)
T 1sxj_D           34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREKVKN  112 (353)
T ss_dssp             SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTHHHH
T ss_pred             CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHHHHH
Confidence            34567899999999999999877544589999999999999999998754211111 122222222222222 2222211


Q ss_pred             hCCC-CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChH-HHhhccc--ceE
Q 046889          233 LGIK-ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRA-ACNQMQA--HIV  304 (333)
Q Consensus       233 l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~-v~~~~~~--~~~  304 (333)
                      +... .......     .....-..++.++++||+....  ....+.  +......+++|++|.... +...+..  ..+
T Consensus       113 ~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i  187 (353)
T 1sxj_D          113 FARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF  187 (353)
T ss_dssp             HHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred             Hhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence            1100 0000000     0000111355699999986431  122221  111223566777776543 2111111  248


Q ss_pred             ecCCCCHHHHHHHHHhhc
Q 046889          305 DVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       305 ~l~~L~~~e~~~lf~~~a  322 (333)
                      .+.+++.++....+.+.+
T Consensus       188 ~~~~~~~~~~~~~l~~~~  205 (353)
T 1sxj_D          188 RFKALDASNAIDRLRFIS  205 (353)
T ss_dssp             ECCCCCHHHHHHHHHHHH
T ss_pred             EeCCCCHHHHHHHHHHHH
Confidence            899999999999888765

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.42  E-value=1.7e-06  Score=78.49  Aligned_cols=160  Identities=13%  Similarity=0.128  Sum_probs=87.8

Q ss_pred             ccccccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEK-VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL  233 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l  233 (333)
                      ....++|++..++.+...+..++ .+.+.|+|+.|+||||+++.+.........+..       ..+........+....
T Consensus        14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~   86 (373)
T 1jr3_A           14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGR   86 (373)
T ss_dssp             STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSC
T ss_pred             chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccC
Confidence            44568999999999999987765 346889999999999999999877642211100       0000000011111000


Q ss_pred             C-----CCCCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-Hhh
Q 046889          234 G-----IKELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-CNQ  298 (333)
Q Consensus       234 ~-----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-~~~  298 (333)
                      .     .........+ ....+.+.+     .+++.++|+||+...  .....+.  +.....++.+|++|++..- ...
T Consensus        87 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~  165 (373)
T 1jr3_A           87 FVDLIEIDAASRTKVE-DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT  165 (373)
T ss_dssp             CSSCEEEETTCSCCSS-CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHH
T ss_pred             CCceEEecccccCCHH-HHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHH
Confidence            0     0000000000 111222222     245789999998653  2222221  1112336677777775432 111


Q ss_pred             cc--cceEecCCCCHHHHHHHHHhhc
Q 046889          299 MQ--AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       299 ~~--~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      +.  ...+.+.+++.++...++.+.+
T Consensus       166 l~sr~~~i~~~~l~~~~~~~~l~~~~  191 (373)
T 1jr3_A          166 ILSRCLQFHLKALDVEQIRHQLEHIL  191 (373)
T ss_dssp             HHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHhheeEeeCCCCCHHHHHHHHHHHH
Confidence            11  2338999999999999988654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.41  E-value=1.5e-07  Score=85.87  Aligned_cols=139  Identities=15%  Similarity=0.221  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----------CCCe----EEEEEeCCCCC--------
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----------MFDE----VAMAVVSQTPS--------  221 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----------~f~~----~~wv~v~~~~~--------  221 (333)
                      ..++.+...+..++  +++|+||+|+|||||++.+.+.....+          ....    .....+.|.+.        
T Consensus        35 ~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~e  112 (390)
T 3gd7_A           35 AILENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRK  112 (390)
T ss_dssp             CSEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHH
T ss_pred             EEeeceeEEEcCCC--EEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHH
Confidence            34445555555677  999999999999999999987543110          0000    01122333321        


Q ss_pred             --------HHHHHHHHHHHhCCC----CC-CC-----------CC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889          222 --------ITKIQDEIAGWLGIK----EL-PD-----------ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-----  271 (333)
Q Consensus       222 --------~~~~~~~i~~~l~~~----~~-~~-----------~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----  271 (333)
                              ...-...+++.+++.    .. ..           .+ -+.++-.|.+.|..++-+|+||++.+..|     
T Consensus       113 nl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~  192 (390)
T 3gd7_A          113 NLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ  192 (390)
T ss_dssp             HHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHH
T ss_pred             HhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence                    122334556666553    11 11           23 44566778999999999999999876543     


Q ss_pred             -hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 -LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 -~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                       +..+.... ..+..+|++||+.+... ++++.+.|
T Consensus       193 ~l~~~l~~~-~~~~tvi~vtHd~e~~~-~aDri~vl  226 (390)
T 3gd7_A          193 IIRRTLKQA-FADCTVILCEARIEAML-ECDQFLVI  226 (390)
T ss_dssp             HHHHHHHTT-TTTSCEEEECSSSGGGT-TCSEEEEE
T ss_pred             HHHHHHHHH-hCCCEEEEEEcCHHHHH-hCCEEEEE
Confidence             22221122 23678999999987554 35555433

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.40  E-value=1.6e-05  Score=69.84  Aligned_cols=145  Identities=14%  Similarity=0.127  Sum_probs=80.9

Q ss_pred             cccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          156 FYNFKSRESTMKDIMEAMKD------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ...++|.+..++.+...+..            .....+.|+||+|+||||||+.+.+...  .   ..+.+..+.-..  
T Consensus        20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~---~~~~i~~~~l~~--   92 (297)
T 3b9p_A           20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--A---TFLNISAASLTS--   92 (297)
T ss_dssp             GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--C---EEEEEESTTTSS--
T ss_pred             HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--C---CeEEeeHHHHhh--
Confidence            45688999988888877632            1235789999999999999999987653  1   122232222110  


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHH-HHHHHHccCceEEEEeCCCCchh-----------------hhhc-cCCCC--CC
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRAS-LLCKRIEKQRVLVILDDLWVQIE-----------------LDRV-GIPYG--ND  282 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~-----------------~~~l-~~~~~--~~  282 (333)
                                   . .......... .+......++.+|+|||+.....                 +..+ ..+..  ..
T Consensus        93 -------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~  158 (297)
T 3b9p_A           93 -------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD  158 (297)
T ss_dssp             -------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred             -------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence                         0 1111222222 23333345788999999864310                 1111 11111  12


Q ss_pred             CcEEEEeeCChH-----HHhhcccceEecCCCCHHHHHHHHHhhc
Q 046889          283 GCKFLLTSRSRA-----ACNQMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       283 g~~vivTTr~~~-----v~~~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      +..||.||+...     +..++. ..+.+...+.++...++...+
T Consensus       159 ~v~vi~~tn~~~~l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~  202 (297)
T 3b9p_A          159 RIVVLAATNRPQELDEAALRRFT-KRVYVSLPDEQTRELLLNRLL  202 (297)
T ss_dssp             CEEEEEEESCGGGBCHHHHHHCC-EEEECCCCCHHHHHHHHHHHH
T ss_pred             cEEEEeecCChhhCCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHH
Confidence            456777887653     223332 236677777777777776654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.39  E-value=1.4e-06  Score=78.19  Aligned_cols=148  Identities=14%  Similarity=0.131  Sum_probs=86.3

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFD-EVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      |.....++|.+..++.|...+..++...+.++||+|+||||+++.+.+...... +. ...-+..+....          
T Consensus        21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~----------   89 (340)
T 1sxj_C           21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRG----------   89 (340)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCS----------
T ss_pred             CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCccccc----------
Confidence            344567889999999999999888754589999999999999999998764211 11 011111111111          


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHH------ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-HHhhcc
Q 046889          232 WLGIKELPDNDELVRASLLCKRI------EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-ACNQMQ  300 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v~~~~~  300 (333)
                                 .......+....      ...+.++|+|++...  .....+.  +......+.+|++|.... +...+.
T Consensus        90 -----------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~  158 (340)
T 1sxj_C           90 -----------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL  158 (340)
T ss_dssp             -----------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred             -----------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence                       111111122211      134679999998643  2222221  111233566777776543 111111


Q ss_pred             c--ceEecCCCCHHHHHHHHHhhc
Q 046889          301 A--HIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       301 ~--~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      .  ..+.+.+++.++..+.+.+.+
T Consensus       159 sR~~~~~~~~l~~~~~~~~l~~~~  182 (340)
T 1sxj_C          159 SQCTRFRFQPLPQEAIERRIANVL  182 (340)
T ss_dssp             TTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             hhceeEeccCCCHHHHHHHHHHHH
Confidence            1  237889999988888777544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.37  E-value=2.4e-07  Score=75.32  Aligned_cols=132  Identities=17%  Similarity=0.125  Sum_probs=68.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeC------------CCCCHHHHHHHHHHHhCCC-----CCCCCC
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS------------QTPSITKIQDEIAGWLGIK-----ELPDND  242 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~------------~~~~~~~~~~~i~~~l~~~-----~~~~~~  242 (333)
                      .++|+|++|+|||||++.+.+...+.  +.....-...            +..+.   .+.++..++..     ......
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~--~~g~~~~~~~~~~~~~~ig~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKR--AIGFWTEEVRDPETKKRTGFRIITTEG---KKKIFSSKFFTSKKLVGSYGVN   76 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG--EEEEEEEEEC------CCEEEEEETTC---CEEEEEETTCCCSSEETTEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc--CCCEEhhhhccccccceeEEEeecCcH---HHHHHHhhcCCccccccccccC
Confidence            68999999999999999999887531  1110000000            00000   00001111110     000011


Q ss_pred             ---HHHHHHHHHHH-----HccCceEEEEeC--CCCchhh---hhccCCCCCCCcEEEEee---CChHHHhhcccc----
Q 046889          243 ---ELVRASLLCKR-----IEKQRVLVILDD--LWVQIEL---DRVGIPYGNDGCKFLLTS---RSRAACNQMQAH----  302 (333)
Q Consensus       243 ---~~~~~~~l~~~-----l~~k~~LlVlDd--v~~~~~~---~~l~~~~~~~g~~vivTT---r~~~v~~~~~~~----  302 (333)
                         .+.....+...     +..++-+++||+  +.+..+.   ..+.-.....+..+|++|   |+..++..+++.    
T Consensus        77 lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r~~~~  156 (178)
T 1ye8_A           77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAV  156 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCE
T ss_pred             cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhcCCcE
Confidence               22334455664     778889999999  6665331   111111122355577777   466776666554    


Q ss_pred             eEecCCCCHHHHHH
Q 046889          303 IVDVRTLTEEESWR  316 (333)
Q Consensus       303 ~~~l~~L~~~e~~~  316 (333)
                      .+.+...+.++..+
T Consensus       157 i~~~~~~~r~~~~~  170 (178)
T 1ye8_A          157 LIELTPENRDVILE  170 (178)
T ss_dssp             EEECCTTTTTTHHH
T ss_pred             EEEecCcCHHHHHH
Confidence            37887777655544

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=98.37  E-value=2.9e-06  Score=79.63  Aligned_cols=147  Identities=12%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCC---CeEEEEEeCCCCCHHHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMF---DEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f---~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      ...+++|++.+++.+...+......-+.|+|++|+|||+||+.+..........   ....++.+.-.          ..
T Consensus       178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------~~  247 (468)
T 3pxg_A          178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------TK  247 (468)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred             CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------cc
Confidence            355789999999999999976555567899999999999999999886422110   11112211111          00


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCC-CcEEEEeeCChHH----------Hhhcc
Q 046889          232 WLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGND-GCKFLLTSRSRAA----------CNQMQ  300 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~-g~~vivTTr~~~v----------~~~~~  300 (333)
                      ..+.   .....   ...+...-..++.+|++|   ...+...+..+.-.. ..++|.+|.....          ..++.
T Consensus       248 ~~g~---~e~~~---~~~~~~~~~~~~~iLfiD---~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~  318 (468)
T 3pxg_A          248 YRGE---FEDRL---KKVMDEIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQ  318 (468)
T ss_dssp             --------CTTH---HHHHHHHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred             ccch---HHHHH---HHHHHHHHhcCCeEEEEe---CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCc
Confidence            0000   00111   112222223567899999   222222222333233 4556666654431          12221


Q ss_pred             cceEecCCCCHHHHHHHHHhhc
Q 046889          301 AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       301 ~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                        .+.+.+.+.++...++....
T Consensus       319 --~i~v~~p~~e~~~~iL~~~~  338 (468)
T 3pxg_A          319 --PIQVDQPSVDESIQILQGLR  338 (468)
T ss_dssp             --EEECCCCCHHHHHHHHHHTT
T ss_pred             --cceeCCCCHHHHHHHHHHHH
Confidence              38899999999999998654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.36  E-value=1.5e-06  Score=82.58  Aligned_cols=162  Identities=9%  Similarity=0.062  Sum_probs=89.4

Q ss_pred             ccccccccchHHHHHHHHHHhhc-----------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKD-----------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV  215 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~  215 (333)
                      |.....++|++..++.|..++..                 +..+.+.|+||.|+||||||+.+.+...    + ..+.+.
T Consensus        35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in  109 (516)
T 1sxj_A           35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN  109 (516)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence            44556789999999999999864                 1346899999999999999999988762    1 223333


Q ss_pred             eCCCCCHHHHHHHHHHHhCC-CCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-----hhhccCCCCCCCcEEEEe
Q 046889          216 VSQTPSITKIQDEIAGWLGI-KELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-----LDRVGIPYGNDGCKFLLT  289 (333)
Q Consensus       216 v~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~g~~vivT  289 (333)
                      .+.... ...+...+..... ..... -......  ......++.+|++||+.....     +..+..-....+..||++
T Consensus       110 ~s~~~~-~~~~~~~i~~~~~~~~~~~-~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli  185 (516)
T 1sxj_A          110 ASDVRS-KTLLNAGVKNALDNMSVVG-YFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILI  185 (516)
T ss_dssp             TTSCCC-HHHHHHTGGGGTTBCCSTT-TTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEE
T ss_pred             CCCcch-HHHHHHHHHHHhccccHHH-HHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEE
Confidence            343333 2233332222111 00000 0000000  001124678999999965411     122211111224456666


Q ss_pred             eCChHH--Hhhccc--ceEecCCCCHHHHHHHHHhhcc
Q 046889          290 SRSRAA--CNQMQA--HIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       290 Tr~~~v--~~~~~~--~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      +.+...  ...+..  ..+.+.+++.++..+++.+.+.
T Consensus       186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~  223 (516)
T 1sxj_A          186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAI  223 (516)
T ss_dssp             ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHH
Confidence            654331  112222  2389999999999988877653

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.35  E-value=1.9e-06  Score=72.04  Aligned_cols=114  Identities=16%  Similarity=0.116  Sum_probs=64.4

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-----------CCCCC
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIK-----------ELPDN  241 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-----------~~~~~  241 (333)
                      +..+.  ++.|+|++|+|||||+..+..  ..   -...+|+......+...+. .++..++..           .....
T Consensus        17 i~~G~--~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   88 (220)
T 2cvh_A           17 FAPGV--LTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDF   88 (220)
T ss_dssp             BCTTS--EEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTT
T ss_pred             CcCCE--EEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCH
Confidence            33455  999999999999999999988  21   1356677665544544433 333333321           11111


Q ss_pred             C-HHHHHHHHHHHHccCceEEEEeCCCCchhh-----------hhc---cCCC-CCCCcEEEEeeCChH
Q 046889          242 D-ELVRASLLCKRIEKQRVLVILDDLWVQIEL-----------DRV---GIPY-GNDGCKFLLTSRSRA  294 (333)
Q Consensus       242 ~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-----------~~l---~~~~-~~~g~~vivTTr~~~  294 (333)
                      . .......+...+..+.-++|+|++....+.           ..+   .... ...|+.||+|+|...
T Consensus        89 ~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~  157 (220)
T 2cvh_A           89 KEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF  157 (220)
T ss_dssp             SHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             HHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence            1 122334444444345789999988754221           111   0111 223778999999754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.34  E-value=1.8e-06  Score=72.83  Aligned_cols=114  Identities=11%  Similarity=0.054  Sum_probs=63.2

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--------------
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL--------------  238 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--------------  238 (333)
                      +..+.  +++|+|++|+|||||++.+.......+  ..+.|+....  ....+...+ ..++....              
T Consensus        20 i~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   92 (235)
T 2w0m_A           20 IPQGF--FIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALM   92 (235)
T ss_dssp             EETTC--EEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC
T ss_pred             CcCCC--EEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccc
Confidence            34455  899999999999999999987665332  2344544332  334433332 23332100              


Q ss_pred             ---------CCCCHHHHHHHHHHHHcc-Cce--EEEEeCCCCch--h---hhhc---cCCC-CCCCcEEEEeeCCh
Q 046889          239 ---------PDNDELVRASLLCKRIEK-QRV--LVILDDLWVQI--E---LDRV---GIPY-GNDGCKFLLTSRSR  293 (333)
Q Consensus       239 ---------~~~~~~~~~~~l~~~l~~-k~~--LlVlDdv~~~~--~---~~~l---~~~~-~~~g~~vivTTr~~  293 (333)
                               ...+..+....+.+.+.. ++-  ++|+|++....  +   ...+   .... ...|+.||++||..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A           93 KEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             ----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             cccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence                     111445555555555433 555  99999987432  1   1111   1111 23488999999987

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.33  E-value=3.4e-06  Score=75.20  Aligned_cols=140  Identities=16%  Similarity=0.196  Sum_probs=78.1

Q ss_pred             HHHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC
Q 046889          165 TMKDIMEAMKDE--KVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDND  242 (333)
Q Consensus       165 ~~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~  242 (333)
                      ....+...+..+  ....+.|+|++|+|||||++.+.+..... .. ..+++..      ..+...+...+..     ..
T Consensus        22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~-----~~   88 (324)
T 1l8q_A           22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKK-----GT   88 (324)
T ss_dssp             HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHH-----TC
T ss_pred             HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHc-----Cc
Confidence            344444444332  23478999999999999999999887543 11 2233332      2333333333211     01


Q ss_pred             HHHHHHHHHHHHccCceEEEEeCCCCch---h----hhhccCCCCCCCcEEEEeeCChH---------HHhhccc-ceEe
Q 046889          243 ELVRASLLCKRIEKQRVLVILDDLWVQI---E----LDRVGIPYGNDGCKFLLTSRSRA---------ACNQMQA-HIVD  305 (333)
Q Consensus       243 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~----~~~l~~~~~~~g~~vivTTr~~~---------v~~~~~~-~~~~  305 (333)
                          ...+...+ .+..+|+|||+....   .    +..+.......|..+|+||.+..         +..++.. ..+.
T Consensus        89 ----~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~  163 (324)
T 1l8q_A           89 ----INEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVE  163 (324)
T ss_dssp             ----HHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEE
T ss_pred             ----HHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEE
Confidence                11122223 246799999986532   1    11111111223667888776432         2333433 3389


Q ss_pred             cCCCCHHHHHHHHHhhcc
Q 046889          306 VRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       306 l~~L~~~e~~~lf~~~a~  323 (333)
                      +.+ +.++...++.+.+.
T Consensus       164 l~~-~~~e~~~il~~~~~  180 (324)
T 1l8q_A          164 IEL-DNKTRFKIIKEKLK  180 (324)
T ss_dssp             CCC-CHHHHHHHHHHHHH
T ss_pred             eCC-CHHHHHHHHHHHHH
Confidence            999 99999999988763

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.33  E-value=1.3e-06  Score=73.63  Aligned_cols=127  Identities=17%  Similarity=0.097  Sum_probs=65.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhh--c--CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCCCCHH--
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEK--K--MFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---------LPDNDEL--  244 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~--~--~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~--  244 (333)
                      +++|+|++|+|||||++.+.......  .  .-...+|+.-....... -+..+...++...         .......  
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGLDPDEVLKHIYVARAFNSNHQ  105 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHHHHHHTTSCHHHHHHTEEEEECCSHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHHHHHHcCCCHHHHhhcEEEEecCChHHH
Confidence            99999999999999999998754321  1  12345666544433332 2334444444320         0011111  


Q ss_pred             -HHHHHHHHHHc------cCceEEEEeCCCCchhh---------------hhc---cCCC-CCCCcEEEEeeC----ChH
Q 046889          245 -VRASLLCKRIE------KQRVLVILDDLWVQIEL---------------DRV---GIPY-GNDGCKFLLTSR----SRA  294 (333)
Q Consensus       245 -~~~~~l~~~l~------~k~~LlVlDdv~~~~~~---------------~~l---~~~~-~~~g~~vivTTr----~~~  294 (333)
                       .....+...+.      .++-++|||++.+..+-               ..+   .... ...|+.||++||    ...
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~  185 (231)
T 4a74_A          106 MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGH  185 (231)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----
T ss_pred             HHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcch
Confidence             11233333333      47789999998754211               011   1111 233889999999    444


Q ss_pred             HHhhcccceEecC
Q 046889          295 ACNQMQAHIVDVR  307 (333)
Q Consensus       295 v~~~~~~~~~~l~  307 (333)
                      +....++..+.+.
T Consensus       186 ~~~~~~d~~l~l~  198 (231)
T 4a74_A          186 ILAHSATLRVYLR  198 (231)
T ss_dssp             ----CCSEEEEEE
T ss_pred             hhHhhceEEEEEE
Confidence            4555555554443

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.32  E-value=1.6e-05  Score=79.22  Aligned_cols=154  Identities=14%  Similarity=0.222  Sum_probs=90.8

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCCHHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      ...+++||+.++..+...+......-+.|+|+.|+|||++++.+.........    ..+.++. +.-  .  .+     
T Consensus       184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~~--~--~l-----  253 (758)
T 1r6b_X          184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LDI--G--SL-----  253 (758)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CCC--C---------
T ss_pred             CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-EcH--H--HH-----
Confidence            45578999999999999987665557889999999999999999987643221    1223321 110  0  00     


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHHHc-cCceEEEEeCCCCc----------hhhhhccCCC-CCCCcEEEEeeCChHHHhh
Q 046889          231 GWLGIKELPDNDELVRASLLCKRIE-KQRVLVILDDLWVQ----------IELDRVGIPY-GNDGCKFLLTSRSRAACNQ  298 (333)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~~~~l~~~~-~~~g~~vivTTr~~~v~~~  298 (333)
                        +.. .............+...+. .++.+|++||+...          .+...+..+. ...+..+|.+|........
T Consensus       254 --~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~  330 (758)
T 1r6b_X          254 --LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI  330 (758)
T ss_dssp             ---CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCC
T ss_pred             --hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhh
Confidence              000 0112233333344444444 35789999998743          1222222333 2335566777765443211


Q ss_pred             ------cccc--eEecCCCCHHHHHHHHHhh
Q 046889          299 ------MQAH--IVDVRTLTEEESWRSAEGK  321 (333)
Q Consensus       299 ------~~~~--~~~l~~L~~~e~~~lf~~~  321 (333)
                            +..+  .+.+...+.++..+++...
T Consensus       331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l  361 (758)
T 1r6b_X          331 FEKDRALARRFQKIDITEPSIEETVQIINGL  361 (758)
T ss_dssp             CCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred             hhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence                  1112  3889999999988888754

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.31  E-value=5.8e-07  Score=70.75  Aligned_cols=26  Identities=35%  Similarity=0.469  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..+.|+|++|+|||||++.+++....
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            38999999999999999999988764

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.29  E-value=9.3e-06  Score=72.68  Aligned_cols=139  Identities=13%  Similarity=0.119  Sum_probs=81.6

Q ss_pred             ccccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKD-----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI  229 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  229 (333)
                      ....++|++..++.+..++..     .....+.|+|+.|+|||+||+.+.+...  ..   .+.+..+....... +..+
T Consensus        27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~~---~~~~~~~~~~~~~~-~~~~  100 (338)
T 3pfi_A           27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--AN---IKTTAAPMIEKSGD-LAAI  100 (338)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--CC---EEEEEGGGCCSHHH-HHHH
T ss_pred             CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CC---eEEecchhccchhH-HHHH
Confidence            456789999999988888753     3344689999999999999999977643  11   12222222111111 1111


Q ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--h---hhhc----cC-------------CCCCCCcEEE
Q 046889          230 AGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--E---LDRV----GI-------------PYGNDGCKFL  287 (333)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~---~~~l----~~-------------~~~~~g~~vi  287 (333)
                      +.                    .  ..+..+|+|||+....  .   +...    ..             ....++..+|
T Consensus       101 ~~--------------------~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i  158 (338)
T 3pfi_A          101 LT--------------------N--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI  158 (338)
T ss_dssp             HH--------------------T--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred             HH--------------------h--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence            11                    0  2356788999886431  1   1111    00             0001135667


Q ss_pred             EeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889          288 LTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       288 vTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      .+|.....     ..++ ...+.+.+++.++...++.+.+
T Consensus       159 ~atn~~~~l~~~L~~R~-~~~i~l~~~~~~e~~~il~~~~  197 (338)
T 3pfi_A          159 GATTRAGMLSNPLRDRF-GMQFRLEFYKDSELALILQKAA  197 (338)
T ss_dssp             EEESCGGGSCHHHHTTC-SEEEECCCCCHHHHHHHHHHHH
T ss_pred             EeCCCccccCHHHHhhc-CEEeeCCCcCHHHHHHHHHHHH
Confidence            67765432     2222 2348999999999999988765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.29  E-value=1e-06  Score=86.40  Aligned_cols=62  Identities=13%  Similarity=0.168  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHccCce--EEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          244 LVRASLLCKRIEKQRV--LVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       244 ~~~~~~l~~~l~~k~~--LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +..+..|.+.|..++-  +|+||++.+..|      +..+...+...|..||++||+.+++.. +++.+.|
T Consensus       207 e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~-~d~ii~l  276 (670)
T 3ux8_A          207 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA-ADYLIDI  276 (670)
T ss_dssp             HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH-CSEEEEE
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh-CCEEEEe
Confidence            4556678888888766  999999987644      222222223347889999999998764 5555555

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.28  E-value=5.5e-06  Score=83.54  Aligned_cols=154  Identities=12%  Similarity=0.197  Sum_probs=83.9

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      ...+++||+.++..+...+..+....+.|+|++|+|||||++.+.........   .....++.+...    .+..    
T Consensus       168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----~l~~----  239 (854)
T 1qvr_A          168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG----SLLA----  239 (854)
T ss_dssp             CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred             CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH----Hhhc----
Confidence            45678999999999999987765556889999999999999999988743221   011112222211    0000    


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHHc--cCceEEEEeCCCCch---------hhhhccCCC-CCCCcEEEEeeCChHH----
Q 046889          232 WLGIKELPDNDELVRASLLCKRIE--KQRVLVILDDLWVQI---------ELDRVGIPY-GNDGCKFLLTSRSRAA----  295 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~~-~~~g~~vivTTr~~~v----  295 (333)
                        +. . ...........+...+.  .++.+|++||+....         +...+..+. ...+..+|.+|.....    
T Consensus       240 --g~-~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~  315 (854)
T 1qvr_A          240 --GA-K-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIE  315 (854)
T ss_dssp             ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHT
T ss_pred             --cC-c-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhc
Confidence              00 0 11122223333333333  367899999986532         111111111 1224456666654432    


Q ss_pred             -Hhhcccc--eEecCCCCHHHHHHHHHh
Q 046889          296 -CNQMQAH--IVDVRTLTEEESWRSAEG  320 (333)
Q Consensus       296 -~~~~~~~--~~~l~~L~~~e~~~lf~~  320 (333)
                       ...+..+  .+.+.+++.++..+++..
T Consensus       316 ~d~aL~rRf~~i~l~~p~~~e~~~iL~~  343 (854)
T 1qvr_A          316 KDPALERRFQPVYVDEPTVEETISILRG  343 (854)
T ss_dssp             TCTTTCSCCCCEEECCCCHHHHHHHHHH
T ss_pred             cCHHHHhCCceEEeCCCCHHHHHHHHHh
Confidence             1122222  288999999999998864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.28  E-value=3.1e-05  Score=68.20  Aligned_cols=147  Identities=11%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889          156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI  222 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  222 (333)
                      ...+.|.+..++.|...+..             .....+.|+||+|+|||+||+.+.+...  .   .  ++.+.    .
T Consensus        14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~---~--~i~v~----~   82 (301)
T 3cf0_A           14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--A---N--FISIK----G   82 (301)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--C---E--EEEEC----H
T ss_pred             HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--C---C--EEEEE----h
Confidence            34578888877777766531             2335799999999999999999998753  1   1  22222    2


Q ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh----------------hhhcc---CC-CCCC
Q 046889          223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE----------------LDRVG---IP-YGND  282 (333)
Q Consensus       223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~---~~-~~~~  282 (333)
                      ..+...   .++..   .   ......+.......+.+|+|||+.....                ...+.   -. ....
T Consensus        83 ~~l~~~---~~g~~---~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~  153 (301)
T 3cf0_A           83 PELLTM---WFGES---E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK  153 (301)
T ss_dssp             HHHHHH---HHTTC---T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred             HHHHhh---hcCch---H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence            222222   12221   1   1122233333445789999999864210                11111   11 1223


Q ss_pred             CcEEEEeeCChHHHh-h-cc----cceEecCCCCHHHHHHHHHhhc
Q 046889          283 GCKFLLTSRSRAACN-Q-MQ----AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       283 g~~vivTTr~~~v~~-~-~~----~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      +..||.||+..+... . ..    ...+.+...+.++-.+++....
T Consensus       154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l  199 (301)
T 3cf0_A          154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL  199 (301)
T ss_dssp             SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred             CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence            567788887664321 1 11    1238888888888888887765

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.23  E-value=9.2e-05  Score=65.82  Aligned_cols=147  Identities=14%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             cccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          156 FYNFKSRESTMKDIMEAMKD------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ...+.|.+..++.|...+.-            ...+-+.|+||.|+|||+||+.+.+.... .   ..+.+..+.-..  
T Consensus        11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~---~~~~i~~~~l~~--   84 (322)
T 1xwi_A           11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S---TFFSISSSDLVS--   84 (322)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-C---EEEEEECCSSCC--
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-C---cEEEEEhHHHHh--
Confidence            35677888887777765521            12357899999999999999999987521 1   112222221110  


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-------------hhhcc-----CCCCCCCcE
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-------------LDRVG-----IPYGNDGCK  285 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~-----~~~~~~g~~  285 (333)
                                   .+...........+...-..++.+|+|||+.....             ...+.     ......+..
T Consensus        85 -------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~  151 (322)
T 1xwi_A           85 -------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL  151 (322)
T ss_dssp             -------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred             -------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence                         11112222222223333345789999999975410             11110     111223556


Q ss_pred             EEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889          286 FLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       286 vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ||.||.....     ..++ ...+.+...+.++..++|....
T Consensus       152 vI~atn~~~~ld~al~rRf-~~~i~i~~P~~~~r~~il~~~l  192 (322)
T 1xwi_A          152 VLGATNIPWVLDSAIRRRF-EKRIYIPLPEPHARAAMFKLHL  192 (322)
T ss_dssp             EEEEESCTTTSCHHHHHTC-CEEEECCCCCHHHHHHHHHHHH
T ss_pred             EEEecCCcccCCHHHHhhc-CeEEEeCCcCHHHHHHHHHHHH
Confidence            6667765432     2222 1237788888888888887765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.21  E-value=8.2e-06  Score=73.88  Aligned_cols=48  Identities=17%  Similarity=0.342  Sum_probs=37.2

Q ss_pred             cccccchHHHHHH---HHHHhhcCCc--eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          156 FYNFKSRESTMKD---IMEAMKDEKV--SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       156 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ...++|++...+.   +...+..+..  +.+.|+||.|+|||+||+.+.....
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4578999887665   4555544443  4899999999999999999998875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.21  E-value=1.9e-06  Score=86.67  Aligned_cols=82  Identities=12%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             HHHHHHHhCCCC-C------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc---cCCCCCCCcEEEEeeCChH
Q 046889          226 QDEIAGWLGIKE-L------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV---GIPYGNDGCKFLLTSRSRA  294 (333)
Q Consensus       226 ~~~i~~~l~~~~-~------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~~~~~g~~vivTTr~~~  294 (333)
                      ...++..+++.. .      ...+ .+..+-.|.+.|..++-+||||++.+..|....   .-.+...|..||++||+.+
T Consensus       880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e  959 (986)
T 2iw3_A          880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE  959 (986)
T ss_dssp             HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHH
T ss_pred             HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHH
Confidence            456677777641 1      1223 344566788889999999999999887553322   1111112457999999999


Q ss_pred             HHhhcccceEecC
Q 046889          295 ACNQMQAHIVDVR  307 (333)
Q Consensus       295 v~~~~~~~~~~l~  307 (333)
                      .+..++++.+.|.
T Consensus       960 ~v~~l~DrVivL~  972 (986)
T 2iw3_A          960 FTKNLTEEVWAVK  972 (986)
T ss_dssp             HHTTTCCEEECCB
T ss_pred             HHHHhCCEEEEEE
Confidence            9888888776654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.18  E-value=1.1e-06  Score=75.94  Aligned_cols=119  Identities=11%  Similarity=0.086  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEE-EeCCCCCHHHHHHHHH--HHhCCCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMA-VVSQTPSITKIQDEIA--GWLGIKELPD  240 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-~v~~~~~~~~~~~~i~--~~l~~~~~~~  240 (333)
                      ..++.+.  +..++  +++|+||+|+|||||++.+.+...+.  +...+++ ..+-.+-.... ..+.  ..++.   ..
T Consensus        15 ~vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~   84 (261)
T 2eyu_A           15 DKVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT   84 (261)
T ss_dssp             THHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB
T ss_pred             HHHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH
Confidence            3566665  44555  99999999999999999999877643  1122222 11100000000 0000  01111   11


Q ss_pred             CCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHH
Q 046889          241 NDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAAC  296 (333)
Q Consensus       241 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~  296 (333)
                         ......+.+.|..++-++++|++.+......+... ...|..|++|||+....
T Consensus        85 ---~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~-~~~g~~vl~t~H~~~~~  136 (261)
T 2eyu_A           85 ---KSFADALRAALREDPDVIFVGEMRDLETVETALRA-AETGHLVFGTLHTNTAI  136 (261)
T ss_dssp             ---SCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHH-HHTTCEEEEEECCSSHH
T ss_pred             ---HHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHH-HccCCEEEEEeCcchHH
Confidence               12356788888888999999999855443332111 23477899999987643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.17  E-value=1.5e-06  Score=77.77  Aligned_cols=142  Identities=15%  Similarity=0.152  Sum_probs=80.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDEL  244 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~  244 (333)
                      .++.+...+..++  +++|+|++|+|||||++.+.+...+.   ...+.+.-........ .+   +.++.   -.....
T Consensus       160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~-~~---~~i~~---~~ggg~  227 (330)
T 2pt7_A          160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKH-HK---NYTQL---FFGGNI  227 (330)
T ss_dssp             HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSS-CS---SEEEE---ECBTTB
T ss_pred             HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeecccccc-ch---hEEEE---EeCCCh
Confidence            5677777777787  89999999999999999998876542   2333332111111000 00   00000   000122


Q ss_pred             HHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhcccceEec-------CCCCHHHHHHH
Q 046889          245 VRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV-------RTLTEEESWRS  317 (333)
Q Consensus       245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l-------~~L~~~e~~~l  317 (333)
                      .....+...|..++-++++|++.+...+..+ ......+..+|+|||...... ..++.+.+       ..++.+....+
T Consensus       228 ~~r~~la~aL~~~p~ilildE~~~~e~~~~l-~~~~~g~~tvi~t~H~~~~~~-~~dri~~l~~g~~~~~~~~~~~i~~~  305 (330)
T 2pt7_A          228 TSADCLKSCLRMRPDRIILGELRSSEAYDFY-NVLCSGHKGTLTTLHAGSSEE-AFIRLANMSSSNSAARNIKFESLIEG  305 (330)
T ss_dssp             CHHHHHHHHTTSCCSEEEECCCCSTHHHHHH-HHHHTTCCCEEEEEECSSHHH-HHHHHHHHHHTSGGGTTSCHHHHHHH
T ss_pred             hHHHHHHHHhhhCCCEEEEcCCChHHHHHHH-HHHhcCCCEEEEEEcccHHHH-HhhhheehhcCCcccCCCCHHHHHHH
Confidence            3456678888889999999999875444333 122222335899999887433 22332211       14566665555


Q ss_pred             HHh
Q 046889          318 AEG  320 (333)
Q Consensus       318 f~~  320 (333)
                      +..
T Consensus       306 i~~  308 (330)
T 2pt7_A          306 FKD  308 (330)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            543

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.17  E-value=1.7e-05  Score=70.39  Aligned_cols=138  Identities=11%  Similarity=0.123  Sum_probs=81.9

Q ss_pred             ccccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKD-----EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI  229 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  229 (333)
                      ....++|++..+..+...+..     .....+.|+|+.|+|||+||+.+.+...  .   ...++..+.......+    
T Consensus        10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--~---~~~~~~~~~~~~~~~l----   80 (324)
T 1hqc_A           10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--V---NLRVTSGPAIEKPGDL----   80 (324)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--C---CEEEECTTTCCSHHHH----
T ss_pred             cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--C---CEEEEeccccCChHHH----
Confidence            446789999988888777742     2335788999999999999999988653  1   1233333322222221    


Q ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHHc---cCceEEEEeCCCCch--hhhhc-------c-CCC------------CCCCc
Q 046889          230 AGWLGIKELPDNDELVRASLLCKRIE---KQRVLVILDDLWVQI--ELDRV-------G-IPY------------GNDGC  284 (333)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~l-------~-~~~------------~~~g~  284 (333)
                                           ...+.   .++.+|+|||+....  ....+       . ...            ...+.
T Consensus        81 ---------------------~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~  139 (324)
T 1hqc_A           81 ---------------------AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF  139 (324)
T ss_dssp             ---------------------HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred             ---------------------HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence                                 11221   356788899886541  11111       0 000            00134


Q ss_pred             EEEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889          285 KFLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       285 ~vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      .+|.+|.....     ..++ ...+.+.+++.++...++.+.+.
T Consensus       140 ~~i~~t~~~~~~~~~l~~R~-~~~i~l~~~~~~e~~~~l~~~~~  182 (324)
T 1hqc_A          140 TLIGATTRPGLITAPLLSRF-GIVEHLEYYTPEELAQGVMRDAR  182 (324)
T ss_dssp             EEEEEESCCSSCSCSTTTTC-SCEEECCCCCHHHHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCHHHHhcc-cEEEecCCCCHHHHHHHHHHHHH
Confidence            56766664431     2222 23489999999999999887653

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.17  E-value=2.8e-05  Score=69.13  Aligned_cols=147  Identities=14%  Similarity=0.083  Sum_probs=83.7

Q ss_pred             ccccccchHHHHHHHHHHhh----------c--CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889          155 GFYNFKSRESTMKDIMEAMK----------D--EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI  222 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~----------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  222 (333)
                      ....++|.+..++.|...+.          .  ...+-+.|+||.|+|||+||+.+.+...  ..     ++.++    .
T Consensus        16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~-----~~~v~----~   84 (322)
T 3eie_A           16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVS----S   84 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CE-----EEEEE----H
T ss_pred             CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CC-----EEEEc----h
Confidence            34568899998888887762          1  1234689999999999999999988753  11     22221    1


Q ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHH-HHHHccCceEEEEeCCCCchh-------------hhhc----c-CCCCCCC
Q 046889          223 TKIQDEIAGWLGIKELPDNDELVRASLL-CKRIEKQRVLVILDDLWVQIE-------------LDRV----G-IPYGNDG  283 (333)
Q Consensus       223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~~-------------~~~l----~-~~~~~~g  283 (333)
                      ..+.    ..      ...........+ ...-..++.+|+|||+.....             ...+    . ......+
T Consensus        85 ~~l~----~~------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~  154 (322)
T 3eie_A           85 SDLV----SK------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG  154 (322)
T ss_dssp             HHHH----TT------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred             HHHh----hc------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence            1111    00      001112222222 233344778999999864310             1111    1 1112335


Q ss_pred             cEEEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889          284 CKFLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       284 ~~vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      ..||.||.....     ..++ ...+.+...+.++..++|...+.
T Consensus       155 v~vi~atn~~~~ld~al~~Rf-~~~i~~~~p~~~~r~~il~~~~~  198 (322)
T 3eie_A          155 VLVLGATNIPWQLDSAIRRRF-ERRIYIPLPDLAARTTMFEINVG  198 (322)
T ss_dssp             EEEEEEESCGGGSCHHHHHHC-CEEEECCCCCHHHHHHHHHHHHT
T ss_pred             eEEEEecCChhhCCHHHHccc-CeEEEeCCCCHHHHHHHHHHHhc
Confidence            666667776533     2222 12377888888899998887754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.16  E-value=9.3e-07  Score=85.30  Aligned_cols=138  Identities=17%  Similarity=0.171  Sum_probs=79.5

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-----H--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-----I--  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-----~--  222 (333)
                      .++++...+..|+  +++|+|++|+|||||++.+.+..++...   ++.            .....++|++.     +  
T Consensus       358 ~l~~v~~~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e  435 (582)
T 3b60_A          358 ALRNINLKIPAGK--TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN  435 (582)
T ss_dssp             SEEEEEEEECTTC--EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred             cccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHH
Confidence            4444555555667  9999999999999999999876543210   000            01223344321     0  


Q ss_pred             -----------HHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh--
Q 046889          223 -----------TKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--  272 (333)
Q Consensus       223 -----------~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--  272 (333)
                                 .+-..+.++.++..                .....+ .+.++-.+.+.+-.++-+++||++.+..|-  
T Consensus       436 ni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~  515 (582)
T 3b60_A          436 NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES  515 (582)
T ss_dssp             HHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred             HHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence                       11222333333321                011223 344566788888889999999999877442  


Q ss_pred             ----hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 ----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          ........ .|..+|++||+...... +++.+.+
T Consensus       516 ~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l  551 (582)
T 3b60_A          516 ERAIQAALDELQ-KNRTSLVIAHRLSTIEQ-ADEIVVV  551 (582)
T ss_dssp             HHHHHHHHHHHH-TTSEEEEECSCGGGTTT-CSEEEEE
T ss_pred             HHHHHHHHHHHh-CCCEEEEEeccHHHHHh-CCEEEEE
Confidence                11111112 27789999999887653 5555444

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.16  E-value=3.9e-05  Score=69.26  Aligned_cols=145  Identities=12%  Similarity=-0.005  Sum_probs=80.8

Q ss_pred             cccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          156 FYNFKSRESTMKDIMEAMKD------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ...++|.+..++.|...+..            .....+.|+|+.|+|||+||+.+.....  .   ..+.+..+.-..  
T Consensus        83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~---~~~~i~~~~l~~--  155 (357)
T 3d8b_A           83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--A---TFFSISASSLTS--  155 (357)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--C---EEEEEEGGGGCC--
T ss_pred             HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--C---eEEEEehHHhhc--
Confidence            35688999888888877642            2345789999999999999999987652  1   122333322111  


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHHccCceEEEEeCCCCc-------------hhhhhcc-----CC-CCCCC
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLC-KRIEKQRVLVILDDLWVQ-------------IELDRVG-----IP-YGNDG  283 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~-------------~~~~~l~-----~~-~~~~g  283 (333)
                                   .. ..........+. ..-..++.+|+|||+...             ..+..+.     .. ....+
T Consensus       156 -------------~~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~  221 (357)
T 3d8b_A          156 -------------KW-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR  221 (357)
T ss_dssp             -------------SS-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred             -------------cc-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence                         00 001111222222 222356789999998432             0011111     11 11224


Q ss_pred             cEEEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889          284 CKFLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       284 ~~vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..||.||.....     ..++. ..+.+...+.++..+++...+
T Consensus       222 v~vI~atn~~~~l~~~l~~Rf~-~~i~i~~p~~~~r~~il~~~~  264 (357)
T 3d8b_A          222 ILVVGATNRPQEIDEAARRRLV-KRLYIPLPEASARKQIVINLM  264 (357)
T ss_dssp             EEEEEEESCGGGBCHHHHTTCC-EEEECCCCCHHHHHHHHHHHH
T ss_pred             EEEEEecCChhhCCHHHHhhCc-eEEEeCCcCHHHHHHHHHHHH
Confidence            556667765432     22221 237788888888888877654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.16  E-value=4.4e-06  Score=69.00  Aligned_cols=88  Identities=19%  Similarity=0.164  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhhcC----CceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 046889          163 ESTMKDIMEAMKDE----KVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKEL  238 (333)
Q Consensus       163 ~~~~~~l~~~l~~~----~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~  238 (333)
                      ...++.+..++...    ....+.|+|++|+|||+|++.+++.....  .....++.+      ..+...+...+..   
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~---  103 (202)
T 2w58_A           35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYV------PELFRELKHSLQD---  103 (202)
T ss_dssp             HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEH------HHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEh------HHHHHHHHHHhcc---
Confidence            34555666665543    11578999999999999999999887532  233445543      2344444333221   


Q ss_pred             CCCCHHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          239 PDNDELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       239 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                        .....    +...+.. ..+|||||++.
T Consensus       104 --~~~~~----~~~~~~~-~~~lilDei~~  126 (202)
T 2w58_A          104 --QTMNE----KLDYIKK-VPVLMLDDLGA  126 (202)
T ss_dssp             --CCCHH----HHHHHHH-SSEEEEEEECC
T ss_pred             --chHHH----HHHHhcC-CCEEEEcCCCC
Confidence              11122    2222332 24999999954

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.15  E-value=7e-05  Score=68.41  Aligned_cols=147  Identities=15%  Similarity=0.110  Sum_probs=80.1

Q ss_pred             ccccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889          155 GFYNFKSRESTMKDIMEAMKD------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI  222 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  222 (333)
                      ....++|.+..++.|...+..            ....-+.|+|+.|+|||+||+.+.....  .   ..+.+..+.-.. 
T Consensus       113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~---~~~~v~~~~l~~-  186 (389)
T 3vfd_A          113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--A---TFFNISAASLTS-  186 (389)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--C---EEEEECSCCC---
T ss_pred             ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--C---cEEEeeHHHhhc-
Confidence            346789999999988887721            1235789999999999999999977642  1   112222221111 


Q ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch-------------hhhhcc------CCCCCCC
Q 046889          223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI-------------ELDRVG------IPYGNDG  283 (333)
Q Consensus       223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~------~~~~~~g  283 (333)
                       .             ............+...-...+.+|+|||+....             ....+.      .......
T Consensus       187 -~-------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~  252 (389)
T 3vfd_A          187 -K-------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR  252 (389)
T ss_dssp             -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred             -c-------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence             0             001111112222222333466899999996430             011110      0001224


Q ss_pred             cEEEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889          284 CKFLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       284 ~~vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..||.||.....     ..++. ..+.+...+.++...++...+
T Consensus       253 v~vI~atn~~~~l~~~l~~R~~-~~i~i~~p~~~~r~~il~~~~  295 (389)
T 3vfd_A          253 VLVMGATNRPQELDEAVLRRFI-KRVYVSLPNEETRLLLLKNLL  295 (389)
T ss_dssp             EEEEEEESCGGGCCHHHHTTCC-EEEECCCCCHHHHHHHHHHHH
T ss_pred             EEEEEecCCchhcCHHHHcCcc-eEEEcCCcCHHHHHHHHHHHH
Confidence            556667765432     22222 237788888888888887665

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.14  E-value=7.4e-07  Score=80.38  Aligned_cols=110  Identities=10%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH--HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI--TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEK  256 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~  256 (333)
                      .+++|+|++|+|||||++.+.+......  ...+ +.+.++...  ... ..++.+... ....   ......+...|..
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i-~t~ed~~e~~~~~~-~~~v~q~~~-~~~~---~~~~~~La~aL~~  195 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHI-LTIEDPIEFVHESK-KCLVNQREV-HRDT---LGFSEALRSALRE  195 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEE-EEEESSCCSCCCCS-SSEEEEEEB-TTTB---SCHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCC--CcEE-EEccCcHHhhhhcc-ccceeeeee-cccc---CCHHHHHHHHhhh
Confidence            4999999999999999999988876531  1111 222221110  000 000000000 0011   1234478899999


Q ss_pred             CceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHh
Q 046889          257 QRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACN  297 (333)
Q Consensus       257 k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~  297 (333)
                      .+-+|++|++.+.+.+..+ ......|..||+|||..+.+.
T Consensus       196 ~PdvillDEp~d~e~~~~~-~~~~~~G~~vl~t~H~~~~~~  235 (356)
T 3jvv_A          196 DPDIILVGEMRDLETIRLA-LTAAETGHLVFGTLHTTSAAK  235 (356)
T ss_dssp             CCSEEEESCCCSHHHHHHH-HHHHHTTCEEEEEESCSSHHH
T ss_pred             CcCEEecCCCCCHHHHHHH-HHHHhcCCEEEEEEccChHHH
Confidence            9999999999876554443 212334778999999987753

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.13  E-value=5.9e-05  Score=64.64  Aligned_cols=147  Identities=14%  Similarity=0.099  Sum_probs=77.8

Q ss_pred             cccccchHHHHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          156 FYNFKSRESTMKDIMEAM---KD---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ...++|.+..++.+...+   ..         ....-+.|+|++|+|||||++.+.+...  ..   .+.+..+.-..  
T Consensus        11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~i~~~~~~~--   83 (257)
T 1lv7_A           11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VP---FFTISGSDFVE--   83 (257)
T ss_dssp             GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CC---EEEECSCSSTT--
T ss_pred             HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CC---EEEEeHHHHHH--
Confidence            456788877766655433   21         1123588999999999999999998753  11   12222111100  


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch----------------hhhhcc----CCCCCCC
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI----------------ELDRVG----IPYGNDG  283 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~----~~~~~~g  283 (333)
                                   .............+.......+.++++||+....                .+..+.    ......+
T Consensus        84 -------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~  150 (257)
T 1lv7_A           84 -------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG  150 (257)
T ss_dssp             -------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred             -------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence                         0111122223333333344567899999883210                011111    0112335


Q ss_pred             cEEEEeeCChHHH-hhc-c----cceEecCCCCHHHHHHHHHhhc
Q 046889          284 CKFLLTSRSRAAC-NQM-Q----AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       284 ~~vivTTr~~~v~-~~~-~----~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..||.||...+.. ..+ .    ...+.+...+.++-.+++....
T Consensus       151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~  195 (257)
T 1lv7_A          151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM  195 (257)
T ss_dssp             EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred             EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence            6677777766421 111 1    1236777777777777776654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.13  E-value=1.4e-05  Score=79.66  Aligned_cols=146  Identities=13%  Similarity=0.206  Sum_probs=82.4

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC----CCeEEEEEeCCCCCHHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM----FDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      ...+++|++.+++.+...+......-+.++|++|+|||++|+.+.........    ..+. ++.+.-            
T Consensus       178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~------------  244 (758)
T 3pxi_A          178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM------------  244 (758)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC--------------
T ss_pred             CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc------------
Confidence            45678999999999999997655556889999999999999999988642211    0111 111111            


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCC-CCCCcEEEEeeCChH----------HHhhc
Q 046889          231 GWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPY-GNDGCKFLLTSRSRA----------ACNQM  299 (333)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~-~~~g~~vivTTr~~~----------v~~~~  299 (333)
                         +. .........+...+......++.+|++|   ...+......+. ......+|.+|....          +..++
T Consensus       245 ---g~-~~~G~~e~~l~~~~~~~~~~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf  317 (758)
T 3pxi_A          245 ---GT-KYRGEFEDRLKKVMDEIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRF  317 (758)
T ss_dssp             ------------CTTHHHHHHHHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred             ---cc-cccchHHHHHHHHHHHHHhcCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhC
Confidence               00 0000000111222333334578899999   222222222332 233456666665444          12222


Q ss_pred             ccceEecCCCCHHHHHHHHHhhc
Q 046889          300 QAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       300 ~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                        ..+.+...+.++..+++.+..
T Consensus       318 --~~i~v~~p~~~~~~~il~~~~  338 (758)
T 3pxi_A          318 --QPIQVDQPSVDESIQILQGLR  338 (758)
T ss_dssp             --EEEECCCCCHHHHHHHHHHTT
T ss_pred             --cEEEeCCCCHHHHHHHHHHHH
Confidence              238999999999999998543

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.12  E-value=2.8e-05  Score=68.60  Aligned_cols=144  Identities=13%  Similarity=0.046  Sum_probs=86.4

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh--cCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK--KMFDEVAMAVVSQ-TPSITKIQDEIAGWLGIKE  237 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~  237 (333)
                      |.++.++.|...+..++.+.+.++||.|+||||+++.+.......  .+.+ ..++..+. ...... .+++.+.+...+
T Consensus         1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~~p   78 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNYSP   78 (305)
T ss_dssp             ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred             ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence            345677788888887777899999999999999999998753211  1222 23333222 222222 333444443211


Q ss_pred             CCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-HHhhcccceEecCCCCHH
Q 046889          238 LPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-ACNQMQAHIVDVRTLTEE  312 (333)
Q Consensus       238 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v~~~~~~~~~~l~~L~~~  312 (333)
                      .                .+++-++|+|++...  ...+.+.  +..+...+.+|++|.++. +...+.++.+.+.+++++
T Consensus        79 ~----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~  142 (305)
T 2gno_A           79 E----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPK  142 (305)
T ss_dssp             S----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCH
T ss_pred             c----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHH
Confidence            1                245679999998754  2233331  222334677888776653 322232337899999999


Q ss_pred             HHHHHHHhhc
Q 046889          313 ESWRSAEGKR  322 (333)
Q Consensus       313 e~~~lf~~~a  322 (333)
                      +....+.+..
T Consensus       143 ~i~~~L~~~~  152 (305)
T 2gno_A          143 EFRDLVKEKI  152 (305)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.12  E-value=1.5e-06  Score=83.74  Aligned_cols=138  Identities=16%  Similarity=0.163  Sum_probs=78.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC-----H--
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS-----I--  222 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~-----~--  222 (333)
                      .++++...+.+|+  +++|+||+|+|||||++.+.+...+...   ++.            .....++|++.     +  
T Consensus       356 ~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~e  433 (578)
T 4a82_A          356 ILKDINLSIEKGE--TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE  433 (578)
T ss_dssp             SEEEEEEEECTTC--EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred             ceeeeEEEECCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHH
Confidence            4445555555667  9999999999999999998866543210   000            01223444321     1  


Q ss_pred             ----------HHHHHHHHHHhCCC----C------------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889          223 ----------TKIQDEIAGWLGIK----E------------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---  272 (333)
Q Consensus       223 ----------~~~~~~i~~~l~~~----~------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---  272 (333)
                                .+-..+.++..+..    .            ....+ .+.++-.+.+.+-.++-+++|||+.+..|.   
T Consensus       434 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~  513 (578)
T 4a82_A          434 NILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE  513 (578)
T ss_dssp             HHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHH
T ss_pred             HHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence                      11112222222221    0            01222 344566788888889999999999877442   


Q ss_pred             ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                         ....... ..+..+|++||+...... +++.+.|
T Consensus       514 ~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i~~l  548 (578)
T 4a82_A          514 SIIQEALDVL-SKDRTTLIVAHRLSTITH-ADKIVVI  548 (578)
T ss_dssp             HHHHHHHHHH-TTTSEEEEECSSGGGTTT-CSEEEEE
T ss_pred             HHHHHHHHHH-cCCCEEEEEecCHHHHHc-CCEEEEE
Confidence               1111111 235679999999988764 4555444

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.10  E-value=1.2e-05  Score=62.71  Aligned_cols=45  Identities=13%  Similarity=0.223  Sum_probs=33.5

Q ss_pred             cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          158 NFKSRESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .++|+...+..+...+..  ....-|.|+|+.|+|||++|+.+++..
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            467888888888777642  222257899999999999999998764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.10  E-value=1.5e-05  Score=69.05  Aligned_cols=143  Identities=13%  Similarity=0.102  Sum_probs=74.0

Q ss_pred             cccchHHHHHHHHH-------Hhh---cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHH
Q 046889          158 NFKSRESTMKDIME-------AMK---DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQD  227 (333)
Q Consensus       158 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~  227 (333)
                      .++|....++.+..       .+.   ......+.|+|+.|+|||+||+.+.....  .  .. +.+..+...       
T Consensus        34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~--~--~~-~~i~~~~~~-------  101 (272)
T 1d2n_A           34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--F--PF-IKICSPDKM-------  101 (272)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--C--SE-EEEECGGGC-------
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--C--CE-EEEeCHHHh-------
Confidence            45565555444443       332   34456899999999999999999988742  1  11 112222100       


Q ss_pred             HHHHHhCCCCCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCc-----------h----hhhhccCCC--CCCCcEEEEe
Q 046889          228 EIAGWLGIKELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQ-----------I----ELDRVGIPY--GNDGCKFLLT  289 (333)
Q Consensus       228 ~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~----~~~~l~~~~--~~~g~~vivT  289 (333)
                           ++.   .... .......+......++.+|+|||+...           .    .+..+.-..  ......||.|
T Consensus       102 -----~g~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t  173 (272)
T 1d2n_A          102 -----IGF---SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT  173 (272)
T ss_dssp             -----TTC---CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred             -----cCC---chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence                 000   0000 011122233333456889999997542           1    121221111  1123456777


Q ss_pred             eCChHHHhh--ccc---ceEecCCCCH-HHHHHHHHh
Q 046889          290 SRSRAACNQ--MQA---HIVDVRTLTE-EESWRSAEG  320 (333)
Q Consensus       290 Tr~~~v~~~--~~~---~~~~l~~L~~-~e~~~lf~~  320 (333)
                      |........  +..   ..+.+.++++ ++...++.+
T Consensus       174 tn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~  210 (272)
T 1d2n_A          174 TSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL  210 (272)
T ss_dssp             ESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred             cCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh
Confidence            777754332  122   2388888887 666666654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.10  E-value=4.6e-05  Score=71.19  Aligned_cols=147  Identities=14%  Similarity=0.159  Sum_probs=81.5

Q ss_pred             cccccchHHHHHHHHHHh---hcC---------CceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          156 FYNFKSRESTMKDIMEAM---KDE---------KVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l---~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ...+.|.++.++.+...+   ...         -.+-+.|+||+|+|||+||+.+.+...  ..   .+.+..+.-..  
T Consensus        15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~---f~~is~~~~~~--   87 (476)
T 2ce7_A           15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VP---FFHISGSDFVE--   87 (476)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CC---EEEEEGGGTTT--
T ss_pred             HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC---eeeCCHHHHHH--
Confidence            345778777665555443   211         123588999999999999999998753  11   12232222111  


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc----------------hhhhhccCC---C-CCCC
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ----------------IELDRVGIP---Y-GNDG  283 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~---~-~~~g  283 (333)
                                   .............+.......+++|+|||+...                ..+..+...   + ...+
T Consensus        88 -------------~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~  154 (476)
T 2ce7_A           88 -------------LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG  154 (476)
T ss_dssp             -------------CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred             -------------HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence                         000111222333455555568899999998542                012222111   1 1236


Q ss_pred             cEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhc
Q 046889          284 CKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       284 ~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..||.||+..+....  ..    ...+.+...+.++-.++++.+.
T Consensus       155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~  199 (476)
T 2ce7_A          155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT  199 (476)
T ss_dssp             EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred             EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence            678888888765321  11    1137777777777777776554

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.09  E-value=1.2e-05  Score=77.64  Aligned_cols=137  Identities=17%  Similarity=0.216  Sum_probs=78.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------C----eEEEEEeCCCCC--------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------D----EVAMAVVSQTPS--------  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~----~~~wv~v~~~~~--------  221 (333)
                      .++++...+..++  +++|+|++|+|||||++.+.+..++...   +        +    ......++|++.        
T Consensus       358 ~l~~isl~i~~Ge--~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  435 (587)
T 3qf4_A          358 VLSGVNFSVKPGS--LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKE  435 (587)
T ss_dssp             SEEEEEEEECTTC--EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHH
T ss_pred             ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHH
Confidence            4444554555667  9999999999999999999866543210   0        0    001223444321        


Q ss_pred             ----------HHHHHHHHHHHhCC-----------C-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh--
Q 046889          222 ----------ITKIQDEIAGWLGI-----------K-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL--  272 (333)
Q Consensus       222 ----------~~~~~~~i~~~l~~-----------~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--  272 (333)
                                ..++ ...++..+.           .     .....+ -+.++-.+.+.+-.++-+++|||+.+..|.  
T Consensus       436 ni~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~  514 (587)
T 3qf4_A          436 NLKWGREDATDDEI-VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT  514 (587)
T ss_dssp             HHTTTCSSCCHHHH-HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred             HHhccCCCCCHHHH-HHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence                      1111 122222211           0     111222 445566788888899999999999876442  


Q ss_pred             ----hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 ----DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ----~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          ....... ..|..+|++||+...+. .+++.+.|
T Consensus       515 ~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~vl  550 (587)
T 3qf4_A          515 EKRILDGLKRY-TKGCTTFIITQKIPTAL-LADKILVL  550 (587)
T ss_dssp             HHHHHHHHHHH-STTCEEEEEESCHHHHT-TSSEEEEE
T ss_pred             HHHHHHHHHHh-CCCCEEEEEecChHHHH-hCCEEEEE
Confidence                1111111 23788999999998876 45555444

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.08  E-value=7.7e-05  Score=69.40  Aligned_cols=147  Identities=15%  Similarity=0.156  Sum_probs=81.3

Q ss_pred             cccccchHHHHHHHHHHhh------------cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          156 FYNFKSRESTMKDIMEAMK------------DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ...++|.+..++.|...+.            ....+-+.|+||.|+|||+||+.+.+...      ...++.++...   
T Consensus       133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~------~~~~~~v~~~~---  203 (444)
T 2zan_A          133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSISSSD---  203 (444)
T ss_dssp             GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC------SSEEEEECCC----
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC------CCCEEEEeHHH---
Confidence            4567888888888877662            12335789999999999999999998751      11233333221   


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch-------------hhhhccCCC-----CCCCcE
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI-------------ELDRVGIPY-----GNDGCK  285 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~-----~~~g~~  285 (333)
                       +...   ..+.   ......   ..+...-..++.+|+|||+....             ....+....     ...+..
T Consensus       204 -l~~~---~~g~---~~~~~~---~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~  273 (444)
T 2zan_A          204 -LVSK---WLGE---SEKLVK---NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL  273 (444)
T ss_dssp             ---------------CCCTHH---HHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred             -HHhh---hcch---HHHHHH---HHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence             1100   0111   111111   11222223578999999987430             011121111     123566


Q ss_pred             EEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhc
Q 046889          286 FLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       286 vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ||.||.....     ..++ ...+.+...+.++...+|....
T Consensus       274 vI~atn~~~~ld~al~rRf-~~~i~i~~P~~~~r~~il~~~l  314 (444)
T 2zan_A          274 VLGATNIPWVLDSAIRRRF-EKRIYIPLPEAHARAAMFRLHL  314 (444)
T ss_dssp             EEEEESCGGGSCHHHHTTC-CEEEECCCCCHHHHHHHHHHHH
T ss_pred             EEecCCCccccCHHHHhhc-ceEEEeCCcCHHHHHHHHHHHH
Confidence            7778876543     2222 1236777777888888887765

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.08  E-value=1.5e-06  Score=84.03  Aligned_cols=139  Identities=18%  Similarity=0.234  Sum_probs=78.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCCH--HHHHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPSI--TKIQD  227 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~~--~~~~~  227 (333)
                      .++++...+..|+  +++|+|++|+|||||++.+.+...+...   ++.            .....++|++..  ..+.+
T Consensus       370 ~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  447 (598)
T 3qf4_B          370 VLKDITFHIKPGQ--KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKE  447 (598)
T ss_dssp             SCCSEEEECCTTC--EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHH
T ss_pred             cccceEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHH
Confidence            4455555555667  9999999999999999999876543210   000            012234444311  01111


Q ss_pred             ---------------HHHHHhCCC----CC------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889          228 ---------------EIAGWLGIK----EL------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---  272 (333)
Q Consensus       228 ---------------~i~~~l~~~----~~------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---  272 (333)
                                     +.++..+..    ..            ...+ .+.++-.+.+.+-.++-+++||++.+..|.   
T Consensus       448 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~  527 (598)
T 3qf4_B          448 NLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE  527 (598)
T ss_dssp             HHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHH
T ss_pred             HHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence                           111111110    00            1122 344556788888889999999999877442   


Q ss_pred             ---hhccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          273 ---DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       273 ---~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                         ........ .|..+|++||+...... +++.+.++
T Consensus       528 ~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~  563 (598)
T 3qf4_B          528 KSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADLIIVLR  563 (598)
T ss_dssp             HHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSEEEEEC
T ss_pred             HHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEE
Confidence               11111111 37889999999988765 55554443

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.07  E-value=3.4e-05  Score=68.54  Aligned_cols=139  Identities=12%  Similarity=0.140  Sum_probs=81.2

Q ss_pred             ccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      |.....++|++..++.+..++..+.. .++.+.|+.|+|||++++.+.+...     ...+.+..+. .... .++..+.
T Consensus        22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~-~~~~-~i~~~~~   94 (324)
T 3u61_B           22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD-CKID-FVRGPLT   94 (324)
T ss_dssp             CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT-CCHH-HHHTHHH
T ss_pred             CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc-cCHH-HHHHHHH
Confidence            34556789999999999999987653 4677778899999999999987653     1122333222 2222 2222111


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch---hhhhcc--CCCCCCCcEEEEeeCChHH-----Hhhccc
Q 046889          232 WLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI---ELDRVG--IPYGNDGCKFLLTSRSRAA-----CNQMQA  301 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~--~~~~~~g~~vivTTr~~~v-----~~~~~~  301 (333)
                      .+....               .+.+++.++++||+....   ....+.  +.....++.+|+||....-     ..++  
T Consensus        95 ~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~--  157 (324)
T 3u61_B           95 NFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC--  157 (324)
T ss_dssp             HHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS--
T ss_pred             HHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC--
Confidence            110000               001367899999997643   222221  1111235678888876542     2222  


Q ss_pred             ceEecCCCCHHHHH
Q 046889          302 HIVDVRTLTEEESW  315 (333)
Q Consensus       302 ~~~~l~~L~~~e~~  315 (333)
                      ..+.+.+++.++-.
T Consensus       158 ~~i~~~~~~~~e~~  171 (324)
T 3u61_B          158 RVITFGQPTDEDKI  171 (324)
T ss_dssp             EEEECCCCCHHHHH
T ss_pred             cEEEeCCCCHHHHH
Confidence            24889999987743

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.06  E-value=8.7e-05  Score=68.39  Aligned_cols=146  Identities=10%  Similarity=0.133  Sum_probs=80.4

Q ss_pred             ccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          157 YNFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      .++.|-++.++.|...+.    .         ...+-|.++||+|+|||+||+.+.+....  .   .+.+..+.-.+  
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~--~---~~~v~~s~l~s--  253 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA--N---FIFSPASGIVD--  253 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--E---EEEEEGGGTCC--
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--C---EEEEehhhhcc--
Confidence            345677777666655542    1         23457999999999999999999988752  1   22333222111  


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch----------------hhhhcc---CCC-CCCC
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI----------------ELDRVG---IPY-GNDG  283 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~---~~~-~~~g  283 (333)
                                   .+...+.......+...-...+++|++|++....                .+..+.   -.+ ...+
T Consensus       254 -------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~  320 (437)
T 4b4t_L          254 -------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ  320 (437)
T ss_dssp             -------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred             -------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence                         1111111112222333334588999999886320                011111   111 2235


Q ss_pred             cEEEEeeCChHHHhh--ccc----ceEecCCCCHHHHHHHHHhhc
Q 046889          284 CKFLLTSRSRAACNQ--MQA----HIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       284 ~~vivTTr~~~v~~~--~~~----~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..||.||..++....  ...    ..|.+..-+.++-.++|+.+.
T Consensus       321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~  365 (437)
T 4b4t_L          321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT  365 (437)
T ss_dssp             SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH
T ss_pred             eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh
Confidence            678888877664221  111    226776667777777777554

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.04  E-value=1.8e-05  Score=69.45  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=31.7

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      .++.+..-+..++  +++|+|++|+|||||++.+.......
T Consensus        24 ~Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~~~~   62 (296)
T 1cr0_A           24 GINDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQWGTA   62 (296)
T ss_dssp             THHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            4566665566677  99999999999999999999887654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.03  E-value=2.8e-05  Score=68.55  Aligned_cols=47  Identities=17%  Similarity=0.341  Sum_probs=38.0

Q ss_pred             ccccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKDE---------KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..++|.+..++.+...+...         ....+.++|++|+|||+||+.+.....
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            34678888888888877643         135799999999999999999998764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.03  E-value=8.8e-05  Score=66.91  Aligned_cols=147  Identities=13%  Similarity=0.091  Sum_probs=81.5

Q ss_pred             cccccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          156 FYNFKSRESTMKDIMEAMKD------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ...++|.+..++.|...+..            ...+-+.|+||.|+|||+||+.+.+...  ..   .+.+..      .
T Consensus        50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~v~~------~  118 (355)
T 2qp9_X           50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST---FFSVSS------S  118 (355)
T ss_dssp             GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CE---EEEEEH------H
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CC---EEEeeH------H
Confidence            35678888888888776621            1123588999999999999999998763  11   112211      1


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-------------hhhcc-----CCCCCCCcE
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-------------LDRVG-----IPYGNDGCK  285 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~-----~~~~~~g~~  285 (333)
                      .+.    .     .+...........+...-..++.+|+|||+.....             ...+.     ......+..
T Consensus       119 ~l~----~-----~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~  189 (355)
T 2qp9_X          119 DLV----S-----KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL  189 (355)
T ss_dssp             HHH----S-----CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred             HHh----h-----hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence            111    1     11111122222222333345789999999874310             11111     111123566


Q ss_pred             EEEeeCChHH-----HhhcccceEecCCCCHHHHHHHHHhhcc
Q 046889          286 FLLTSRSRAA-----CNQMQAHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       286 vivTTr~~~v-----~~~~~~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      ||.||.....     ..++ ...+.+...+.++..++|.....
T Consensus       190 vI~atn~~~~ld~al~rRf-~~~i~i~~P~~~~r~~il~~~l~  231 (355)
T 2qp9_X          190 VLGATNIPWQLDSAIRRRF-ERRIYIPLPDLAARTTMFEINVG  231 (355)
T ss_dssp             EEEEESCGGGSCHHHHHTC-CEEEECCCCCHHHHHHHHHHHHT
T ss_pred             EEeecCCcccCCHHHHccc-CEEEEeCCcCHHHHHHHHHHHHh
Confidence            6667765532     2222 22377888888888888887653

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.00  E-value=8.3e-05  Score=66.47  Aligned_cols=142  Identities=10%  Similarity=0.061  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhc--------------------CCCeEEEEEeC---C
Q 046889          163 ESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKK--------------------MFDEVAMAVVS---Q  218 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------------------~f~~~~wv~v~---~  218 (333)
                      ++..+.+...+..++. +.+.++|+.|+|||++|+.+........                    +++. .++...   .
T Consensus         8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~~   86 (334)
T 1a5t_A            8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGKN   86 (334)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTCS
T ss_pred             HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccCC
Confidence            5567778887777663 4699999999999999999987764211                    1111 111111   0


Q ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--hhhhcc--CCCCCCCcEEEEeeCChH
Q 046889          219 TPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--ELDRVG--IPYGNDGCKFLLTSRSRA  294 (333)
Q Consensus       219 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~--~~~~~~g~~vivTTr~~~  294 (333)
                      ..... ..+++.+.+....                ..+++.++|+|++....  ..+.+.  +..+..++.+|++|++..
T Consensus        87 ~~~i~-~ir~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~  149 (334)
T 1a5t_A           87 TLGVD-AVREVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE  149 (334)
T ss_dssp             SBCHH-HHHHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred             CCCHH-HHHHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence            11111 1122222221100                12467899999987542  222221  222334677788887764


Q ss_pred             -HHhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          295 -ACNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       295 -v~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                       +...+.++  .+.+.++++++....+.+..
T Consensus       150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~  180 (334)
T 1a5t_A          150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV  180 (334)
T ss_dssp             GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred             hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc
Confidence             22222222  38999999999998887764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.97  E-value=5.3e-05  Score=66.60  Aligned_cols=46  Identities=20%  Similarity=0.335  Sum_probs=36.7

Q ss_pred             ccccchHHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD--------------EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..++|.+..++.+...+..              .....+.|+|+.|+|||+||+.+....
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999888888776643              223468899999999999999998876

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.96  E-value=0.00016  Score=65.73  Aligned_cols=147  Identities=10%  Similarity=0.080  Sum_probs=81.1

Q ss_pred             cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889          156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI  222 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  222 (333)
                      ..++.|-++.++.|.+.+.-             ...+-|.++||+|+|||.||+.+.+....  .   .+.+..+.-.+ 
T Consensus       147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~--~---f~~v~~s~l~s-  220 (405)
T 4b4t_J          147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC--K---FIRVSGAELVQ-  220 (405)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC--E---EEEEEGGGGSC-
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC--C---ceEEEhHHhhc-
Confidence            34456777777766655421             13456899999999999999999988752  2   22333222111 


Q ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch------------h----hhhcc---CC-CCCC
Q 046889          223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI------------E----LDRVG---IP-YGND  282 (333)
Q Consensus       223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~---~~-~~~~  282 (333)
                                    .+...+...+...+...-...+++|++|++....            .    +..+.   -. ....
T Consensus       221 --------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~  286 (405)
T 4b4t_J          221 --------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK  286 (405)
T ss_dssp             --------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred             --------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence                          1111111222222333334578999999986321            0    11111   11 1233


Q ss_pred             CcEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhc
Q 046889          283 GCKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       283 g~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      +..||.||..++....  ..    ...+.+..-+.++-.++|+.+.
T Consensus       287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~  332 (405)
T 4b4t_J          287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS  332 (405)
T ss_dssp             CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred             CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence            5567778876654211  11    2237777777888888887654

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.96  E-value=8.1e-06  Score=82.20  Aligned_cols=112  Identities=15%  Similarity=0.081  Sum_probs=57.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH--HhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA--KEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---LPDNDELVRASLLCKR  253 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~--~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~  253 (333)
                      .+++|+||||+|||||++.+....  ...+.|.+.--..++.-       ..++..++..+   ............+...
T Consensus       663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~-------d~i~~~ig~~d~l~~~lStf~~e~~~~a~i  735 (934)
T 3thx_A          663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIV-------DCILARVGAGDSQLKGVSTFMAEMLETASI  735 (934)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECC-------SEEEEECC---------CHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHH-------HHHHHhcCchhhHHHhHhhhHHHHHHHHHH
Confidence            499999999999999999984221  11122221111111000       00111111110   0111222233344455


Q ss_pred             H--ccCceEEEEeCCCCchhh-------hhccCCCC-CCCcEEEEeeCChHHHh
Q 046889          254 I--EKQRVLVILDDLWVQIEL-------DRVGIPYG-NDGCKFLLTSRSRAACN  297 (333)
Q Consensus       254 l--~~k~~LlVlDdv~~~~~~-------~~l~~~~~-~~g~~vivTTr~~~v~~  297 (333)
                      +  ..++-|++||++.+..+.       ..+...+. ..|+.+|++||+.+++.
T Consensus       736 l~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~  789 (934)
T 3thx_A          736 LRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTA  789 (934)
T ss_dssp             HHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGG
T ss_pred             HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHH
Confidence            5  568899999999765331       11111122 24889999999988754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.95  E-value=7.6e-06  Score=63.77  Aligned_cols=46  Identities=11%  Similarity=0.265  Sum_probs=31.5

Q ss_pred             ccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..++|++..++.+...+..  ....-|.|+|+.|+|||++|+.+.+..
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            4567888887777776642  222257899999999999999887643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.95  E-value=5.2e-05  Score=71.27  Aligned_cols=148  Identities=11%  Similarity=0.104  Sum_probs=84.3

Q ss_pred             cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889          156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI  222 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  222 (333)
                      ...+.|.+..++.|...+..             ....-+.|+|+.|+|||+||+.+.+...  ..   .+.+..      
T Consensus       203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~~---fv~vn~------  271 (489)
T 3hu3_A          203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AF---FFLING------  271 (489)
T ss_dssp             GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--SE---EEEEEH------
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--CC---EEEEEc------
Confidence            34578888888888776642             2334689999999999999999987642  11   122221      


Q ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc----------------hhhhhccCCC-CCCCcE
Q 046889          223 TKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ----------------IELDRVGIPY-GNDGCK  285 (333)
Q Consensus       223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~-~~~g~~  285 (333)
                      ..+.    .     .............+......++.+|+|||+...                ..+..+.-.. ...+..
T Consensus       272 ~~l~----~-----~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~  342 (489)
T 3hu3_A          272 PEIM----S-----KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI  342 (489)
T ss_dssp             HHHH----T-----SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred             hHhh----h-----hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence            1111    0     111111222333344455567889999998321                0111111111 222556


Q ss_pred             EEEeeCChHH-Hhhccc-----ceEecCCCCHHHHHHHHHhhcc
Q 046889          286 FLLTSRSRAA-CNQMQA-----HIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       286 vivTTr~~~v-~~~~~~-----~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      ||.||+.... -..+..     ..+.+...+.++-.++|..++.
T Consensus       343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~  386 (489)
T 3hu3_A          343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK  386 (489)
T ss_dssp             EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred             EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence            6667776533 111111     1278888899999999987753

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.94  E-value=0.00011  Score=67.73  Aligned_cols=146  Identities=13%  Similarity=0.131  Sum_probs=79.3

Q ss_pred             cccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH
Q 046889          156 FYNFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI  222 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  222 (333)
                      ...+.|-++.++.|...+.    .         ...+-|.++||+|+|||+||+.+.+....  .   .+.+..+.-.+ 
T Consensus       180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~--~---f~~v~~s~l~~-  253 (434)
T 4b4t_M          180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA--T---FLKLAAPQLVQ-  253 (434)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--E---EEEEEGGGGCS-
T ss_pred             hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC--C---EEEEehhhhhh-
Confidence            3456677777777765542    1         23457999999999999999999988752  1   22232222110 


Q ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHH-HHHHccCceEEEEeCCCCc-------h-----h----hhhcc---CCC-CC
Q 046889          223 TKIQDEIAGWLGIKELPDNDELVRASLL-CKRIEKQRVLVILDDLWVQ-------I-----E----LDRVG---IPY-GN  281 (333)
Q Consensus       223 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~-------~-----~----~~~l~---~~~-~~  281 (333)
                                    .+.. ........+ ...-...+++|++|++...       .     .    +..+.   -.+ ..
T Consensus       254 --------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~  318 (434)
T 4b4t_M          254 --------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD  318 (434)
T ss_dssp             --------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred             --------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence                          1111 111222222 2233357899999988521       0     0    11111   111 22


Q ss_pred             CCcEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhc
Q 046889          282 DGCKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      .+..||.||..++....  ..    ...+.+..-+.++-.++|+.+.
T Consensus       319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~  365 (434)
T 4b4t_M          319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS  365 (434)
T ss_dssp             CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence            35566778877654221  11    1126777777777777776554

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.92  E-value=0.00014  Score=66.88  Aligned_cols=48  Identities=25%  Similarity=0.350  Sum_probs=35.7

Q ss_pred             cccccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..++.|-+..++.|...+.-             ...+-+.++||+|+|||+||+.+.+...
T Consensus       171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            34566777777776655421             2345689999999999999999998875

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.90  E-value=0.00024  Score=65.57  Aligned_cols=145  Identities=10%  Similarity=0.089  Sum_probs=79.5

Q ss_pred             cccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHH
Q 046889          158 NFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITK  224 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~  224 (333)
                      .+.|-++.++.|.+.+.    .         ...+-|.++||.|+|||+||+.+.+....  .   .+.+..+.-.+   
T Consensus       210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~--~---fi~vs~s~L~s---  281 (467)
T 4b4t_H          210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA--T---FIRVIGSELVQ---  281 (467)
T ss_dssp             SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC--E---EEEEEGGGGCC---
T ss_pred             HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC--C---eEEEEhHHhhc---
Confidence            45677777777665442    1         23567899999999999999999988752  2   22232222110   


Q ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch----------------hhhhcc---CCC-CCCCc
Q 046889          225 IQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI----------------ELDRVG---IPY-GNDGC  284 (333)
Q Consensus       225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~---~~~-~~~g~  284 (333)
                                  .+...+...+...+...-...+++|++|++....                .+..+.   -.+ ...+.
T Consensus       282 ------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V  349 (467)
T 4b4t_H          282 ------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI  349 (467)
T ss_dssp             ------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred             ------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence                        1111111122222333334578999999886320                011111   111 22255


Q ss_pred             EEEEeeCChHHHh----hcc--cceEecCCCCHHHHHHHHHhhc
Q 046889          285 KFLLTSRSRAACN----QMQ--AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       285 ~vivTTr~~~v~~----~~~--~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      .||.||...+...    +-+  ...+.+..-+.++-.++|+.+.
T Consensus       350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l  393 (467)
T 4b4t_H          350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS  393 (467)
T ss_dssp             EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH
T ss_pred             EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHh
Confidence            6677776655311    111  2237777777888888887654

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.89  E-value=2.7e-05  Score=71.73  Aligned_cols=61  Identities=13%  Similarity=0.054  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHccCc--eEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          244 LVRASLLCKRIEKQR--VLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       244 ~~~~~~l~~~l~~k~--~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +...-.|...|..++  -+|+|||+.+..+.      ..+..... .|..||++||+..++.. ++.++.|
T Consensus       300 e~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~-~d~i~~l  368 (415)
T 4aby_A          300 ELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAAR-AHHHYKV  368 (415)
T ss_dssp             HHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTT-CSEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhh-cCeEEEE
Confidence            334445666676777  89999999987542      22212223 37889999999998754 5555444

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.88  E-value=7.5e-06  Score=77.96  Aligned_cols=129  Identities=15%  Similarity=0.102  Sum_probs=73.6

Q ss_pred             ccchHHHHHHHHH-HhhcCCceEEEEEcCCCCcHHHHHHHH--HHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 046889          159 FKSRESTMKDIME-AMKDEKVSIIGICGRGGIGKTTLVKEI--QKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGI  235 (333)
Q Consensus       159 ~~gr~~~~~~l~~-~l~~~~~~vi~I~G~~G~GKTtLa~~v--~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~  235 (333)
                      +.+....++++.. .+..++  +++|+|++|+|||||++.+  .+..+..   ...+++...+  ..... ......++.
T Consensus        21 ~~~g~~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~--~~~~~-~~~~~~~g~   92 (525)
T 1tf7_A           21 MRTMIEGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEE--TPQDI-IKNARSFGW   92 (525)
T ss_dssp             ECCCCTTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSS--CHHHH-HHHHGGGTC
T ss_pred             ccCCchhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeC--CHHHH-HHHHHHcCC
Confidence            3334456777776 677777  9999999999999999994  4554432   2355655433  21211 111111111


Q ss_pred             C----------------C----C---CCCCHHHHHHHHHHHHc-cCceEEEEeCCCCch-----------hhhhccCCCC
Q 046889          236 K----------------E----L---PDNDELVRASLLCKRIE-KQRVLVILDDLWVQI-----------ELDRVGIPYG  280 (333)
Q Consensus       236 ~----------------~----~---~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~-----------~~~~l~~~~~  280 (333)
                      .                .    .   ...........+...|. .++-+++||.+....           .+..+...+.
T Consensus        93 ~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~  172 (525)
T 1tf7_A           93 DLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLK  172 (525)
T ss_dssp             CHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHH
T ss_pred             ChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            0                0    0   01113344555555554 577899999986421           1222222222


Q ss_pred             CCCcEEEEeeCChHH
Q 046889          281 NDGCKFLLTSRSRAA  295 (333)
Q Consensus       281 ~~g~~vivTTr~~~v  295 (333)
                      ..|..||+|||+...
T Consensus       173 ~~g~tvl~itH~~~~  187 (525)
T 1tf7_A          173 QIGATTVMTTERIEE  187 (525)
T ss_dssp             HHTCEEEEEEECSSS
T ss_pred             HCCCEEEEEecCCCC
Confidence            348889999999765

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.88  E-value=8.6e-06  Score=70.39  Aligned_cols=47  Identities=21%  Similarity=0.321  Sum_probs=32.5

Q ss_pred             ccccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMK---D---------EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..++|.+..++.+...+.   .         ....-+.|+|+.|+|||+||+.+.+...
T Consensus        11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            457777666555554432   1         1122478999999999999999998764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.87  E-value=2.1e-05  Score=68.44  Aligned_cols=118  Identities=20%  Similarity=0.188  Sum_probs=61.9

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC--------CCeEEEEEeCCCCCHHHHHH---------------HH
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM--------FDEVAMAVVSQTPSITKIQD---------------EI  229 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--------f~~~~wv~v~~~~~~~~~~~---------------~i  229 (333)
                      +..+.  ++.|+|++|+|||||+..+.........        -..+.++.....  ...+..               .+
T Consensus        27 l~~G~--i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~--~~~~~~r~~~~g~~~~~~~~~~~  102 (279)
T 1nlf_A           27 MVAGT--VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAV  102 (279)
T ss_dssp             EETTS--EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             ccCCC--EEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC--HHHHHHHHHHHHhhcChhhhhhc
Confidence            44556  9999999999999999999876553211        123445554443  222211               11


Q ss_pred             HHHhCCCCC-----CCCCHHHHHHHHHHHHccCceEEEEeCCCC--chhh------hhc---cCCC-CCCCcEEEEeeCC
Q 046889          230 AGWLGIKEL-----PDNDELVRASLLCKRIEKQRVLVILDDLWV--QIEL------DRV---GIPY-GNDGCKFLLTSRS  292 (333)
Q Consensus       230 ~~~l~~~~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~------~~l---~~~~-~~~g~~vivTTr~  292 (333)
                      ++.+.+...     ...+... ...+...+ .+.-+||||.+..  ..+-      ..+   ...+ ...|+.||+++|.
T Consensus       103 ~~~l~l~~~~~~~~~~ls~g~-~~~i~~l~-~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~  180 (279)
T 1nlf_A          103 ADGLLIQPLIGSLPNIMAPEW-FDGLKRAA-EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  180 (279)
T ss_dssp             HHHEEECCCTTSCCCTTSHHH-HHHHHHHH-TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             cCceEEeecCCCCcccCCHHH-HHHHHHhc-CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            233332211     1112222 33344444 3578999999876  2111      111   1111 2338899999998


Q ss_pred             hHHH
Q 046889          293 RAAC  296 (333)
Q Consensus       293 ~~v~  296 (333)
                      ....
T Consensus       181 ~~~~  184 (279)
T 1nlf_A          181 SKGA  184 (279)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            7654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.87  E-value=1.9e-05  Score=78.60  Aligned_cols=62  Identities=8%  Similarity=0.136  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHccC---ceEEEEeCCCCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          244 LVRASLLCKRIEKQ---RVLVILDDLWVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       244 ~~~~~~l~~~l~~k---~~LlVlDdv~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.+.-.|...|..+   +-++|||++.+..+...      +...+...|..||++||+.+++ .++++.+.|
T Consensus       735 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L  805 (842)
T 2vf7_A          735 EAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDI  805 (842)
T ss_dssp             HHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence            44556677777775   69999999987754222      2222233478899999999998 567777777

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.86  E-value=1.7e-06  Score=80.73  Aligned_cols=36  Identities=22%  Similarity=0.186  Sum_probs=28.6

Q ss_pred             HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      .+...+..++  +++|+|++|+|||||++.+.+.....
T Consensus       130 ~vsl~i~~Ge--~v~IvGpnGsGKSTLlr~L~Gl~~p~  165 (460)
T 2npi_A          130 KIRMSNFEGP--RVVIVGGSQTGKTSLSRTLCSYALKF  165 (460)
T ss_dssp             HHHHHSSSCC--CEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred             cCceEeCCCC--EEEEECCCCCCHHHHHHHHhCccccc
Confidence            4455555566  89999999999999999999876543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.86  E-value=8.3e-06  Score=80.00  Aligned_cols=62  Identities=19%  Similarity=0.227  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHccC---ceEEEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          244 LVRASLLCKRIEKQ---RVLVILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       244 ~~~~~~l~~~l~~k---~~LlVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.+.-.|.+.|..+   +-+|+||++.+..|      +..+.......|..||++||+..++.. +++.+.|
T Consensus       548 ~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~-~d~i~~l  618 (670)
T 3ux8_A          548 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT-ADYIIDL  618 (670)
T ss_dssp             HHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEE
T ss_pred             HHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-CCEEEEe
Confidence            44566778888654   46999999987754      222222223347889999999998754 5655555

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.85  E-value=1.1e-05  Score=79.80  Aligned_cols=113  Identities=15%  Similarity=0.130  Sum_probs=59.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH-hh-cCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK-EK-KMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---LPDNDELVRASLLCKR  253 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~-~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~  253 (333)
                      .+++|+||||+|||||++.+..... .+ +.|.......++--..       ++..++..+   ............+...
T Consensus       577 ~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-------i~~~~~~~d~l~~g~S~~~~e~~~la~i  649 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-------IYTRIGASDDLAGGKSTFMVEMEEVALI  649 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE-------EEEECCC------CCSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH-------hhccCCHHHHHHhcccHHHHHHHHHHHH
Confidence            3899999999999999999987642 11 2221100000110000       000111100   0011122223345555


Q ss_pred             H--ccCceEEEEeCC---CCchhhhh----ccCCCCCCCcEEEEeeCChHHHhh
Q 046889          254 I--EKQRVLVILDDL---WVQIELDR----VGIPYGNDGCKFLLTSRSRAACNQ  298 (333)
Q Consensus       254 l--~~k~~LlVlDdv---~~~~~~~~----l~~~~~~~g~~vivTTr~~~v~~~  298 (333)
                      +  ..++-|++||++   .+..|-..    +.-.+...|+.+|++||+.+.+..
T Consensus       650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~~  703 (765)
T 1ewq_A          650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL  703 (765)
T ss_dssp             HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred             HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence            6  678999999999   65544211    111111258899999999988653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.85  E-value=8.5e-06  Score=64.63  Aligned_cols=41  Identities=17%  Similarity=0.157  Sum_probs=31.9

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +|....++.+...+..++  +++|+|++|+|||||++.+.+..
T Consensus        17 ~g~~~~l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           17 FGKKFAEILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HHHHHHHHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC
Confidence            344445555555555666  99999999999999999999876

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.82  E-value=0.00023  Score=65.07  Aligned_cols=145  Identities=14%  Similarity=0.119  Sum_probs=78.4

Q ss_pred             ccccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          157 YNFKSRESTMKDIMEAMK----D---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      .++-|-++.++.|.+.+.    .         ...+-|.++||.|+|||.||+.+.+....  .|   +.+..+.-.+  
T Consensus       182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~--~f---i~v~~s~l~s--  254 (437)
T 4b4t_I          182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA--TF---LRIVGSELIQ--  254 (437)
T ss_dssp             GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC--EE---EEEESGGGCC--
T ss_pred             eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC--CE---EEEEHHHhhh--
Confidence            345566777666655442    1         23457999999999999999999988752  21   2222221110  


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHH-HHHHHccCceEEEEeCCCCch----------------hhhhccC---CC-CCC
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASL-LCKRIEKQRVLVILDDLWVQI----------------ELDRVGI---PY-GND  282 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~---~~-~~~  282 (333)
                                   .+.. ........ +...-...+++|++|++....                .+..+..   .+ ...
T Consensus       255 -------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~  320 (437)
T 4b4t_I          255 -------------KYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG  320 (437)
T ss_dssp             -------------SSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred             -------------ccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence                         1111 11122222 223334578999999876320                0111110   11 223


Q ss_pred             CcEEEEeeCChHHHhh--cc----cceEecCCCCHHHHHHHHHhhc
Q 046889          283 GCKFLLTSRSRAACNQ--MQ----AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       283 g~~vivTTr~~~v~~~--~~----~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      +..||.||..++....  +.    ...|.+..-+.++-.++|+.+.
T Consensus       321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l  366 (437)
T 4b4t_I          321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT  366 (437)
T ss_dssp             SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence            5567778877765321  11    1126666666777777777554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.81  E-value=0.00011  Score=64.50  Aligned_cols=84  Identities=15%  Similarity=0.042  Sum_probs=48.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS-QTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ  257 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k  257 (333)
                      .+++++|++|+||||++..+.......... .+.++... ......+.+.......+.+.....+...+...+. .+ .+
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~-~~  182 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF-SE  182 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG-GG
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh-cC
Confidence            499999999999999999999887653332 22333322 2223333444444455553222233444444444 33 45


Q ss_pred             ceEEEEeC
Q 046889          258 RVLVILDD  265 (333)
Q Consensus       258 ~~LlVlDd  265 (333)
                      .-++++|-
T Consensus       183 ~dlvIiDT  190 (296)
T 2px0_A          183 YDHVFVDT  190 (296)
T ss_dssp             SSEEEEEC
T ss_pred             CCEEEEeC
Confidence            56889993

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.79  E-value=1.8e-05  Score=75.37  Aligned_cols=111  Identities=16%  Similarity=0.080  Sum_probs=63.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-------------CC--C
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIK-------------EL--P  239 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-------------~~--~  239 (333)
                      .+.  +++|+|++|+|||||++.++......+.  ..+++. .+. ....+...+ ..++..             ..  .
T Consensus       280 ~G~--i~~i~G~~GsGKSTLl~~l~g~~~~~G~--~vi~~~-~ee-~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~  352 (525)
T 1tf7_A          280 KDS--IILATGATGTGKTLLVSRFVENACANKE--RAILFA-YEE-SRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPE  352 (525)
T ss_dssp             SSC--EEEEEECTTSSHHHHHHHHHHHHHTTTC--CEEEEE-SSS-CHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGG
T ss_pred             CCc--EEEEEeCCCCCHHHHHHHHHHHHHhCCC--CEEEEE-EeC-CHHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccc
Confidence            455  9999999999999999999987654321  223333 232 233333222 222211             00  1


Q ss_pred             CCCHH-HHHHHHHHHHccCceEEEEeCCCCchhhh-----------hccCCCCCCCcEEEEeeCCh
Q 046889          240 DNDEL-VRASLLCKRIEKQRVLVILDDLWVQIELD-----------RVGIPYGNDGCKFLLTSRSR  293 (333)
Q Consensus       240 ~~~~~-~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-----------~l~~~~~~~g~~vivTTr~~  293 (333)
                      ..+.. .+...+...+..++-+||+| +.+..+..           .+.......|..||+|||+.
T Consensus       353 ~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          353 SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            12333 34445666677788999999 64432221           22122234488899999987

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.79  E-value=3.6e-05  Score=80.71  Aligned_cols=140  Identities=15%  Similarity=0.238  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCCC--------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTPS--------  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~~--------  221 (333)
                      .++++...+.+++  +++|+|++|+|||||++.+.+...+...   ++.            .....++|++.        
T Consensus       405 vL~~isl~i~~G~--~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e  482 (1284)
T 3g5u_A          405 ILKGLNLKVKSGQ--TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAE  482 (1284)
T ss_dssp             SEEEEEEEECTTC--EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHH
T ss_pred             ceecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHH
Confidence            4555555555677  9999999999999999999866543210   000            01234455431        


Q ss_pred             ----------HHHHHH--------HHHHHhCCC-------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhhhc
Q 046889          222 ----------ITKIQD--------EIAGWLGIK-------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELDRV  275 (333)
Q Consensus       222 ----------~~~~~~--------~i~~~l~~~-------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l  275 (333)
                                ...+.+        +.+..+...       .....+ .+.++-.|.+.+-.++-+++|||+.+..|-..-
T Consensus       483 Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~  562 (1284)
T 3g5u_A          483 NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE  562 (1284)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHH
T ss_pred             HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence                      111111        112222110       011222 345566788888889999999999877542211


Q ss_pred             -----cCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          276 -----GIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       276 -----~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                           .+.....|..+|++||+...... ++..+.|+
T Consensus       563 ~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~  598 (1284)
T 3g5u_A          563 AVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFD  598 (1284)
T ss_dssp             HHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECS
T ss_pred             HHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEE
Confidence                 01111237889999999988765 45555443

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.78  E-value=3.6e-05  Score=78.41  Aligned_cols=114  Identities=13%  Similarity=0.110  Sum_probs=60.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe-----EEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCH-HH-HHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE-----VAMAVVSQTPSITKIQDEIAGWLGIKELP---DNDE-LV-RAS  248 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-----~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~-~~-~~~  248 (333)
                      .+++|+||||+|||||++.+ +......+..+     ...+.+.+         .|+..++..+..   .... .+ ...
T Consensus       790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~l~v~d---------~I~~rig~~d~~~~~~stf~~em~~~  859 (1022)
T 2o8b_B          790 YCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCRLTPID---------RVFTRLGASDRIMSGESTFFVELSET  859 (1022)
T ss_dssp             CEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEEECCCS---------BEEEECC---------CHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCCCCHHH---------HHHHHcCCHHHHhhchhhhHHHHHHH
Confidence            59999999999999999999 55433222110     11111110         011111111100   0111 11 112


Q ss_pred             HHHHHHccCceEEEEeCCCCchhh-------hhccCCCCC-CCcEEEEeeCChHHHhhcccc
Q 046889          249 LLCKRIEKQRVLVILDDLWVQIEL-------DRVGIPYGN-DGCKFLLTSRSRAACNQMQAH  302 (333)
Q Consensus       249 ~l~~~l~~k~~LlVlDdv~~~~~~-------~~l~~~~~~-~g~~vivTTr~~~v~~~~~~~  302 (333)
                      .+...+..++-|++||++....+.       ..+...+.. .|+.+|++||+.+.+..++..
T Consensus       860 a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~  921 (1022)
T 2o8b_B          860 ASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN  921 (1022)
T ss_dssp             HHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred             HHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence            334445678899999999654221       111112222 388999999999987765543

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.77  E-value=6.1e-05  Score=75.70  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=55.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh--hcCCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE--KKMFDE--VAMAVVSQTPSITKIQDEIAGWLGIKE---LPDNDELVRASLLC  251 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~f~~--~~wv~v~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~  251 (333)
                      .+++|+||||+|||||++.+....-.  ...|..  ...+.+..         .++..++..+   ........-...+.
T Consensus       674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d---------~i~~~ig~~d~l~~~~stfs~em~~~~  744 (918)
T 3thx_B          674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD---------GIFTRMGAADNIYKGRSTFMEELTDTA  744 (918)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS---------EEEEEC----------CCHHHHHHHHH
T ss_pred             eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH---------HHHHhCChHHHHHHhHHHhhHHHHHHH
Confidence            49999999999999999988643211  111211  11111000         0011111100   01112221222222


Q ss_pred             HHH--ccCceEEEEeCCCCchhhh-------hccCCC-CCCCcEEEEeeCChHHHh
Q 046889          252 KRI--EKQRVLVILDDLWVQIELD-------RVGIPY-GNDGCKFLLTSRSRAACN  297 (333)
Q Consensus       252 ~~l--~~k~~LlVlDdv~~~~~~~-------~l~~~~-~~~g~~vivTTr~~~v~~  297 (333)
                      ..+  ..++-|++||++.+..+..       .+...+ ...|+.||++||+.+++.
T Consensus       745 ~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~  800 (918)
T 3thx_B          745 EIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE  800 (918)
T ss_dssp             HHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence            222  4688899999997664321       111112 235899999999988754

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.75  E-value=8e-05  Score=65.65  Aligned_cols=45  Identities=13%  Similarity=0.302  Sum_probs=34.6

Q ss_pred             cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          158 NFKSRESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .++|+...+..+...+..  .....|.|+|+.|+|||++|+.+.+..
T Consensus         3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence            467888888777776643  222367899999999999999998764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.73  E-value=8.4e-05  Score=66.84  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=64.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH--hhc-CC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCC--------C-CCCC---
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK--EKK-MF-DEVAMAVVSQTPSITKIQDEIAGWLGIKE--------L-PDND---  242 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~--~~~-~f-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~--------~-~~~~---  242 (333)
                      .++.|+|++|+|||||+..+.....  +.. .. ..++|+.....+.... +..++..++...        . ...+   
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~~~  210 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNH  210 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCChHH
Confidence            3999999999999999999988752  111 11 2347776655443333 333444443320        0 0111   


Q ss_pred             HHHHHHHHHHHHc------cCceEEEEeCCCCchhh---------------hhcc---CCC-CCCCcEEEEeeCChH
Q 046889          243 ELVRASLLCKRIE------KQRVLVILDDLWVQIEL---------------DRVG---IPY-GNDGCKFLLTSRSRA  294 (333)
Q Consensus       243 ~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~---------------~~l~---~~~-~~~g~~vivTTr~~~  294 (333)
                      ..+....+...+.      .+.-+||+|.+....+.               ..+.   ... ...++.||+|+|...
T Consensus       211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence            1223334444454      46789999998765322               1111   111 223788999998654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.71  E-value=0.00012  Score=72.80  Aligned_cols=143  Identities=13%  Similarity=0.155  Sum_probs=79.8

Q ss_pred             ccccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKDE---------KVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQD  227 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~  227 (333)
                      ..++|.+..++.+...+...         ....+.++||.|+|||+||+.+......  .-...+.+.++.-...     
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~--~~~~~i~i~~s~~~~~-----  563 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG--DEESMIRIDMSEYMEK-----  563 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS--CTTCEEEEEGGGGCSS-----
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC--CCcceEEEechhcccc-----
Confidence            45789998888887777531         2236999999999999999999987631  1122334444322110     


Q ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHHc-cCceEEEEeCCCCch--hhhhc-------cCC------CCCCCcEEEEeeC
Q 046889          228 EIAGWLGIKELPDNDELVRASLLCKRIE-KQRVLVILDDLWVQI--ELDRV-------GIP------YGNDGCKFLLTSR  291 (333)
Q Consensus       228 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--~~~~l-------~~~------~~~~g~~vivTTr  291 (333)
                                ... .    ...+...+. ....+|+|||+....  ....+       .+.      .....+.||+||.
T Consensus       564 ----------~~~-~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn  628 (758)
T 3pxi_A          564 ----------HST-S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN  628 (758)
T ss_dssp             ----------CCC-C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred             ----------ccc-c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence                      000 0    011122222 234599999996441  11111       110      0112567888887


Q ss_pred             C-----------------hHHHhhcccceEecCCCCHHHHHHHHHhhc
Q 046889          292 S-----------------RAACNQMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       292 ~-----------------~~v~~~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      .                 +++..++. ..+.+.+|+.++...++....
T Consensus       629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~-~~i~~~~l~~~~~~~i~~~~l  675 (758)
T 3pxi_A          629 VGASEKDKVMGELKRAFRPEFINRID-EIIVFHSLEKKHLTEIVSLMS  675 (758)
T ss_dssp             SSTTCCHHHHHHHHHHSCHHHHTTSS-EEEECC--CHHHHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHhhCCHHHHhhCC-eEEecCCCCHHHHHHHHHHHH
Confidence            3                 22233332 358899999999888876543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.71  E-value=0.00047  Score=65.75  Aligned_cols=47  Identities=30%  Similarity=0.404  Sum_probs=33.9

Q ss_pred             ccccchHHHHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMK------DEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..++|-+...+.+...+.      .....++.|+||+|+|||||++.+.+...
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            346777766666544332      11234899999999999999999998874

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.71  E-value=3.4e-05  Score=69.02  Aligned_cols=50  Identities=24%  Similarity=0.379  Sum_probs=40.7

Q ss_pred             cccccccchHHHHHHHHHHhhcC-----CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          154 EGFYNFKSRESTMKDIMEAMKDE-----KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       154 ~~~~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .....++|.+..++.+...+..+     ....+.|+||+|+|||||++.+.+...
T Consensus        22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            34567889988999888887643     235799999999999999999998764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.70  E-value=0.00012  Score=61.91  Aligned_cols=118  Identities=14%  Similarity=0.072  Sum_probs=64.6

Q ss_pred             hcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCC
Q 046889          174 KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----MFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---------LPD  240 (333)
Q Consensus       174 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---------~~~  240 (333)
                      ..+.  ++.|+|++|+|||||+..+........    .-...+|+..........+ ..++..++...         ...
T Consensus        22 ~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~   98 (243)
T 1n0w_A           22 ETGS--ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARA   98 (243)
T ss_dssp             ETTS--EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             cCCe--EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEec
Confidence            3455  999999999999999999987532111    1245677766654444333 34445555421         012


Q ss_pred             CCHHH---HHHHHHHHHc-cCceEEEEeCCCCchh---------------hhhcc---CCC-CCCCcEEEEeeCChH
Q 046889          241 NDELV---RASLLCKRIE-KQRVLVILDDLWVQIE---------------LDRVG---IPY-GNDGCKFLLTSRSRA  294 (333)
Q Consensus       241 ~~~~~---~~~~l~~~l~-~k~~LlVlDdv~~~~~---------------~~~l~---~~~-~~~g~~vivTTr~~~  294 (333)
                      .+..+   ....+.+.+. .+.-+||+|++....+               ...+.   ... ...|+.||+|+|...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~  175 (243)
T 1n0w_A           99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA  175 (243)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred             CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence            22222   2333555554 3678999998865421               11111   111 223888999999654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.69  E-value=4.8e-05  Score=69.02  Aligned_cols=108  Identities=13%  Similarity=0.105  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH--HhCCCCCCCCCHHHHHHHHHHHHcc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG--WLGIKELPDNDELVRASLLCKRIEK  256 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~l~~  256 (333)
                      .+++|+|++|+|||||++.+.+...... -..+.++.-+-....... ..++.  .++.   ..   ......+...|..
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~-~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~---~~---~~~~~~l~~~L~~  208 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDYINQTK-SYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAALRE  208 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHS-CCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCSHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCcCC-CcEEEEecccHhhhhccC-ceEEEeeecCC---CH---HHHHHHHHHHhhh
Confidence            4899999999999999999998776431 112222221100000000 00000  0111   11   1224567888888


Q ss_pred             CceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHH
Q 046889          257 QRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAA  295 (333)
Q Consensus       257 k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v  295 (333)
                      .+-+|++|++.+...+...... ...|..|+.|+|..+.
T Consensus       209 ~pd~illdE~~d~e~~~~~l~~-~~~g~~vi~t~H~~~~  246 (372)
T 2ewv_A          209 DPDVIFVGEMRDLETVETALRA-AETGHLVFGTLHTNTA  246 (372)
T ss_dssp             CCSEEEESCCCSHHHHHHHHHH-HTTTCEEEECCCCCSH
T ss_pred             CcCEEEECCCCCHHHHHHHHHH-HhcCCEEEEEECcchH
Confidence            8899999999866554433111 2347779999998764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.69  E-value=6.7e-05  Score=64.62  Aligned_cols=47  Identities=15%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             ccccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..++|.+..+..+...+..  .....+.|+|+.|+|||+||+.+.+...
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            3567888777777655532  1223678999999999999999987653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.66  E-value=0.00049  Score=59.60  Aligned_cols=121  Identities=8%  Similarity=0.071  Sum_probs=65.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH-ccCce
Q 046889          181 IGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRI-EKQRV  259 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~  259 (333)
                      +.|+||+|+|||||++.+.+....     ..+.+..+.-.+.                ...........+.+.. ...++
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~  105 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC  105 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999987542     2233332211100                0000111122222222 34678


Q ss_pred             EEEEeCCCCchh-------------hhhccC---C-CCCCCcEEEEeeCChHHHhhc--c----cceEecCCCCHHHHHH
Q 046889          260 LVILDDLWVQIE-------------LDRVGI---P-YGNDGCKFLLTSRSRAACNQM--Q----AHIVDVRTLTEEESWR  316 (333)
Q Consensus       260 LlVlDdv~~~~~-------------~~~l~~---~-~~~~g~~vivTTr~~~v~~~~--~----~~~~~l~~L~~~e~~~  316 (333)
                      ++++|++.....             ...+..   . .......++.+|..+++....  .    ...+.+..-+.++-.+
T Consensus       106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~  185 (274)
T 2x8a_A          106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA  185 (274)
T ss_dssp             EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred             eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence            999999864210             011100   0 111244566778777653211  1    2227788888888888


Q ss_pred             HHHhhc
Q 046889          317 SAEGKR  322 (333)
Q Consensus       317 lf~~~a  322 (333)
                      +|+...
T Consensus       186 il~~~~  191 (274)
T 2x8a_A          186 ILKTIT  191 (274)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            887654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.66  E-value=3.7e-05  Score=63.87  Aligned_cols=128  Identities=15%  Similarity=0.088  Sum_probs=62.9

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-CCCeEEE-----------EEeCCCCCHHHH--
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-MFDEVAM-----------AVVSQTPSITKI--  225 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~w-----------v~v~~~~~~~~~--  225 (333)
                      +|....++.+    ..++  +++|+|+||+|||||++.+.+. .+.. .......           .++++.+ .+.+  
T Consensus        10 ~g~~~~l~~i----~~Ge--~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-~enl~~   81 (208)
T 3b85_A           10 LGQKHYVDAI----DTNT--IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-NEKIDP   81 (208)
T ss_dssp             HHHHHHHHHH----HHCS--EEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------CT
T ss_pred             HhHHHHHHhc----cCCC--EEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-HHHHHH
Confidence            4444555554    5677  8999999999999999999988 5432 2221101           0112211 0111  


Q ss_pred             -HHHHHHHhCCCCCCCCCHHHHHH---------HHHHHHccCceEEEEeCCCCc--hhhhhccCCCCCCCcEEEEeeCCh
Q 046889          226 -QDEIAGWLGIKELPDNDELVRAS---------LLCKRIEKQRVLVILDDLWVQ--IELDRVGIPYGNDGCKFLLTSRSR  293 (333)
Q Consensus       226 -~~~i~~~l~~~~~~~~~~~~~~~---------~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~g~~vivTTr~~  293 (333)
                       .......+.. ........+...         .+.+.|..++-+|+||++.+.  ..+..+.... ..|..|| +||+.
T Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l-~~g~tii-vtHd~  158 (208)
T 3b85_A           82 YLRPLHDALRD-MVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRL-GFGSKMV-VTGDI  158 (208)
T ss_dssp             TTHHHHHHHTT-TSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTB-CTTCEEE-EEEC-
T ss_pred             HHHHHHHHHHH-hccHHHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHh-cCCCEEE-EECCH
Confidence             0011111111 001111111111         133445567889999999876  2233332333 3477888 99998


Q ss_pred             HHHhh
Q 046889          294 AACNQ  298 (333)
Q Consensus       294 ~v~~~  298 (333)
                      ..+..
T Consensus       159 ~~~~~  163 (208)
T 3b85_A          159 TQVDL  163 (208)
T ss_dssp             -----
T ss_pred             HHHhC
Confidence            86553

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.66  E-value=7.5e-05  Score=68.27  Aligned_cols=88  Identities=13%  Similarity=0.084  Sum_probs=51.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh----hcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCCCCHHH-
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKE----KKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---------LPDNDELV-  245 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~----~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~-  245 (333)
                      ++.|+|++|+|||||+..++-....    ...-...+|+.....+.... +..++..++...         ....+... 
T Consensus       180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~~~~~~  258 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAYNADHQ  258 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccCChHHH
Confidence            9999999999999999976533211    11224567777665555443 344666666521         01122222 


Q ss_pred             --HHHHHHHHHc-cCceEEEEeCCCC
Q 046889          246 --RASLLCKRIE-KQRVLVILDDLWV  268 (333)
Q Consensus       246 --~~~~l~~~l~-~k~~LlVlDdv~~  268 (333)
                        ....+...+. .+.-+||+|.+..
T Consensus       259 ~~~l~~~~~~l~~~~~~llVIDs~t~  284 (400)
T 3lda_A          259 LRLLDAAAQMMSESRFSLIVVDSVMA  284 (400)
T ss_dssp             HHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred             HHHHHHHHHHHHhcCCceEEecchhh
Confidence              2233333333 3678999998754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.65  E-value=9.9e-05  Score=65.17  Aligned_cols=42  Identities=19%  Similarity=0.328  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          162 RESTMKDIMEAMKDE---KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       162 r~~~~~~l~~~l~~~---~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +...+..+..++...   ....+.|+|+.|+|||+||..+++...
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            344555555666541   134788999999999999999998775

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.65  E-value=0.00076  Score=60.50  Aligned_cols=82  Identities=18%  Similarity=0.177  Sum_probs=54.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKR  253 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~  253 (333)
                      .++.|.|++|+|||||+..+........  ..++|++.....+..     .+.+++...     ....+.++....+...
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l  134 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL  134 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence            4999999999999999999988765422  245677766655543     455666531     1233455555555555


Q ss_pred             Hc-cCceEEEEeCCC
Q 046889          254 IE-KQRVLVILDDLW  267 (333)
Q Consensus       254 l~-~k~~LlVlDdv~  267 (333)
                      +. .+.-++|+|.+.
T Consensus       135 ~~~~~~dlvVIDSi~  149 (356)
T 3hr8_A          135 VRSGVVDLIVVDSVA  149 (356)
T ss_dssp             HHTSCCSEEEEECTT
T ss_pred             hhhcCCCeEEehHhh
Confidence            54 456799999764

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.63  E-value=0.00018  Score=71.52  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+++|+||||+|||||++.+....
T Consensus       608 ~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            499999999999999999998753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.62  E-value=6.8e-05  Score=78.62  Aligned_cols=137  Identities=15%  Similarity=0.231  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC---------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP---------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~---------  220 (333)
                      .++++...+..|+  +++|+|++|+|||||++.+.+..++...   ++.            .....++|++         
T Consensus      1048 ~l~~vsl~i~~Ge--~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 1125 (1284)
T 3g5u_A         1048 VLQGLSLEVKKGQ--TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125 (1284)
T ss_dssp             SBSSCCEEECSSS--EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHH
T ss_pred             eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHH
Confidence            4555665566677  9999999999999999999876543210   000            0012233332         


Q ss_pred             -----------CHHHHHHHHHHHhCCC----------------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 -----------SITKIQDEIAGWLGIK----------------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 -----------~~~~~~~~i~~~l~~~----------------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                                 +... ....++..+..                .....+ .+.++-.+.+.|-.++-+|+||++.+..|.
T Consensus      1126 Ni~~~~~~~~~~~~~-i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A         1126 NIAYGDNSRVVSYEE-IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204 (1284)
T ss_dssp             HHTCCCSSCCCCHHH-HHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCH
T ss_pred             HHhccCCCCCCCHHH-HHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence                       1112 22222222211                001223 445566788888899999999999877542


Q ss_pred             hh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 DR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..      .... ...|+.||++||+.+.... +++.+.|
T Consensus      1205 ~~~~~i~~~l~~-~~~~~tvi~isH~l~~i~~-~dri~vl 1242 (1284)
T 3g5u_A         1205 ESEKVVQEALDK-AREGRTCIVIAHRLSTIQN-ADLIVVI 1242 (1284)
T ss_dssp             HHHHHHHHHHHH-HSSSSCEEEECSCTTGGGS-CSEEEEE
T ss_pred             HHHHHHHHHHHH-hCCCCEEEEEecCHHHHHc-CCEEEEE
Confidence            21      1111 1237789999999987654 4554433

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.62  E-value=2.9e-05  Score=66.22  Aligned_cols=40  Identities=18%  Similarity=0.264  Sum_probs=23.9

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      |....++.+...+..+.  +|+|+|++|+|||||++.+.+..
T Consensus        10 ~~~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             -------------CCSE--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHh
Confidence            44456777777766665  99999999999999999998765

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.60  E-value=0.0009  Score=59.46  Aligned_cols=30  Identities=33%  Similarity=0.422  Sum_probs=25.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      .+..+++|+|++|+|||||++.+.+..+..
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~  156 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH  156 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            345699999999999999999999887654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.59  E-value=3.1e-05  Score=64.86  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .-++.+...+..++  +++|+||+|+|||||++.+.+..
T Consensus        11 ~~l~~isl~i~~G~--~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           11 SSGLVPRGSMNNIY--PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -----------CCC--CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccccCCceecCCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence            34566777777777  89999999999999999998865

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.59  E-value=0.00022  Score=71.62  Aligned_cols=63  Identities=21%  Similarity=0.297  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHccC---ceEEEEeCCCCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          243 ELVRASLLCKRIEKQ---RVLVILDDLWVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       243 ~~~~~~~l~~~l~~k---~~LlVlDdv~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      -+.++-.|.+.|..+   +-|+|||++.+..+...      +...+...|..||++||+.+++.. +++.+.|
T Consensus       809 GErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivL  880 (916)
T 3pih_A          809 GEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDL  880 (916)
T ss_dssp             HHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEE
T ss_pred             HHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEe
Confidence            345566788888654   57999999987754222      212222347789999999998765 5666666

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.55  E-value=9.2e-05  Score=61.37  Aligned_cols=41  Identities=17%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          164 STMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       164 ~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..++.|...+..  +...+++|+|++|+|||||++.+......
T Consensus         6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A            6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            455556555542  34469999999999999999999988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.54  E-value=6.9e-05  Score=78.79  Aligned_cols=131  Identities=13%  Similarity=0.183  Sum_probs=75.2

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe------------EEEEEeCCCC---------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE------------VAMAVVSQTP---------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~------------~~wv~v~~~~---------  220 (333)
                      .++++...+..|+  .++|+|++|+|||||++.+.+...+...   ++.            ....+|+|++         
T Consensus       433 vL~~isl~i~~G~--~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~e  510 (1321)
T 4f4c_A          433 ILRGMNLRVNAGQ--TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEE  510 (1321)
T ss_dssp             SEEEEEEEECTTC--EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHH
T ss_pred             eeeceEEeecCCc--EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhH
Confidence            3455555555677  9999999999999999999876543211   000            0123445543         


Q ss_pred             ---------CHHHHHH--------HHHHHhCCC--------CCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhh-
Q 046889          221 ---------SITKIQD--------EIAGWLGIK--------ELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDR-  274 (333)
Q Consensus       221 ---------~~~~~~~--------~i~~~l~~~--------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~-  274 (333)
                               +.+++.+        +.+..+...        +..-...+.++-.|.+.+-.++-+++|||+.+..|-.. 
T Consensus       511 NI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te  590 (1321)
T 4f4c_A          511 NISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE  590 (1321)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTH
T ss_pred             HHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHH
Confidence                     2222221        122222111        11122245566778899989999999999987644211 


Q ss_pred             -----ccCCCCCCCcEEEEeeCChHHHhh
Q 046889          275 -----VGIPYGNDGCKFLLTSRSRAACNQ  298 (333)
Q Consensus       275 -----l~~~~~~~g~~vivTTr~~~v~~~  298 (333)
                           ..... ..|..+|++||.......
T Consensus       591 ~~i~~~l~~~-~~~~T~iiiaHrls~i~~  618 (1321)
T 4f4c_A          591 GIVQQALDKA-AKGRTTIIIAHRLSTIRN  618 (1321)
T ss_dssp             HHHHHHHHHH-HTTSEEEEECSCTTTTTT
T ss_pred             HHHHHHHHHH-hCCCEEEEEcccHHHHHh
Confidence                 11111 126778888888776543

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.53  E-value=0.00036  Score=69.91  Aligned_cols=62  Identities=19%  Similarity=0.258  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHccC---ceEEEEeCCCCchhhhh------ccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          244 LVRASLLCKRIEKQ---RVLVILDDLWVQIELDR------VGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       244 ~~~~~~l~~~l~~k---~~LlVlDdv~~~~~~~~------l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +.+.-.|...|..+   +-++|||++.+..+...      +.......|..||++||+.+++. .+++.+.|
T Consensus       850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL  920 (972)
T 2r6f_A          850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDL  920 (972)
T ss_dssp             HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEE
Confidence            44556677888764   48999999987754222      21222334788999999999875 56666666

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.52  E-value=0.00056  Score=60.15  Aligned_cols=87  Identities=18%  Similarity=0.185  Sum_probs=52.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH--HHHHHHHHHHhCCCC---CCCCCHHHH-HHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI--TKIQDEIAGWLGIKE---LPDNDELVR-ASLLC  251 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l~  251 (333)
                      ..+++|+|++|+||||++..+.......+.  .+.++.. ..+..  .+.+...++.++.+.   ....+.... ...+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~--kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~  180 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGK--SVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA  180 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCC--EEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence            459999999999999999999988765321  2333332 22222  222344556666531   122233332 33455


Q ss_pred             HHHccCceEEEEeCCC
Q 046889          252 KRIEKQRVLVILDDLW  267 (333)
Q Consensus       252 ~~l~~k~~LlVlDdv~  267 (333)
                      ..+..+.-++++|.+-
T Consensus       181 ~a~~~~~dvvIiDtpg  196 (306)
T 1vma_A          181 HALARNKDVVIIDTAG  196 (306)
T ss_dssp             HHHHTTCSEEEEEECC
T ss_pred             HHHhcCCCEEEEECCC
Confidence            5566667789999764

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.47  E-value=0.0018  Score=58.11  Aligned_cols=82  Identities=16%  Similarity=0.149  Sum_probs=53.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKRI  254 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l  254 (333)
                      ++.|.|++|+|||||+..+.......+  ..++|++.....+..     .+..++...     ....+.++....+....
T Consensus        63 iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~  135 (349)
T 2zr9_A           63 VIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLV  135 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence            899999999999999999886654322  356788777665542     245566431     11234455444444444


Q ss_pred             cc-CceEEEEeCCCC
Q 046889          255 EK-QRVLVILDDLWV  268 (333)
Q Consensus       255 ~~-k~~LlVlDdv~~  268 (333)
                      .. +.-+||+|.+..
T Consensus       136 ~~~~~~lIVIDsl~~  150 (349)
T 2zr9_A          136 RSGALDIIVIDSVAA  150 (349)
T ss_dssp             TTTCCSEEEEECGGG
T ss_pred             hcCCCCEEEEcChHh
Confidence            33 567999998754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.47  E-value=6.9e-05  Score=62.09  Aligned_cols=29  Identities=17%  Similarity=0.445  Sum_probs=23.8

Q ss_pred             HhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+..++  +++|+|++|+|||||++.+.+..
T Consensus        16 ~i~~Ge--i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           16 PAAVGR--VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ---CCC--EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence            355666  99999999999999999998875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.45  E-value=0.00022  Score=58.75  Aligned_cols=43  Identities=21%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             hHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          162 RESTMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       162 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      |...++.|...+..   ....+|+|+|++|+|||||++.+......
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~   48 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45566777776653   34569999999999999999999887654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.44  E-value=0.00063  Score=57.47  Aligned_cols=114  Identities=12%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             hcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-------------C---
Q 046889          174 KDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIK-------------E---  237 (333)
Q Consensus       174 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-------------~---  237 (333)
                      ..+.  ++.|.|++|+|||||+..+.......+  ...+|+....  ....+.+.+ ..++..             +   
T Consensus        21 ~~G~--~~~i~G~~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~   93 (247)
T 2dr3_A           21 PERN--VVLLSGGPGTGKTIFSQQFLWNGLKMG--EPGIYVALEE--HPVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFT   93 (247)
T ss_dssp             ETTC--EEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEESSS--CHHHHHHHH-HTTTCCCHHHHHHTSEEEEECST
T ss_pred             CCCc--EEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEccC--CHHHHHHHH-HHcCCCHHHHhhCCcEEEEecch
Confidence            3455  899999999999999887765543221  2455655443  333333322 222221             0   


Q ss_pred             --------------CCCCCHHHHHHHHHHHHcc-CceEEEEeCCCCch-----h----hhhccCCCCCCCcEEEEeeCCh
Q 046889          238 --------------LPDNDELVRASLLCKRIEK-QRVLVILDDLWVQI-----E----LDRVGIPYGNDGCKFLLTSRSR  293 (333)
Q Consensus       238 --------------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~-----~----~~~l~~~~~~~g~~vivTTr~~  293 (333)
                                    ....+..++...+.+.+.. +.-++|+|.+....     .    +..+.......|+.||+|+|..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~  173 (247)
T 2dr3_A           94 AGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVS  173 (247)
T ss_dssp             TTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred             hhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence                          0113444555666666543 56689999875431     1    1111111123478899998865


Q ss_pred             H
Q 046889          294 A  294 (333)
Q Consensus       294 ~  294 (333)
                      .
T Consensus       174 ~  174 (247)
T 2dr3_A          174 V  174 (247)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.43  E-value=0.00013  Score=64.17  Aligned_cols=38  Identities=13%  Similarity=0.241  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ...++.+...+..++  +++|+|++|+|||||++.+.+..
T Consensus       113 ~~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          113 INALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc
Confidence            456788888777888  99999999999999999998776

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.43  E-value=0.00031  Score=59.97  Aligned_cols=23  Identities=30%  Similarity=0.619  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +.|+|++|+|||||++.+.+...
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.39  E-value=0.00013  Score=76.78  Aligned_cols=130  Identities=15%  Similarity=0.267  Sum_probs=74.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CCe----EEEEEeCCCC---------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FDE----VAMAVVSQTP---------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~~----~~wv~v~~~~---------  220 (333)
                      .++++...+.+|+  .|+|||++|+|||||++.+.....+...           ++.    .....|+|++         
T Consensus      1094 VL~~isl~I~~Ge--~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1171 (1321)
T 4f4c_A         1094 ILKGLSFSVEPGQ--TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAE 1171 (1321)
T ss_dssp             SEEEEEEEECTTC--EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHH
T ss_pred             cccceeEEECCCC--EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHH
Confidence            4555665566677  9999999999999999999865543210           000    0012334433         


Q ss_pred             -----------CHHHHHHHHHHHhCCC--------C--------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh
Q 046889          221 -----------SITKIQDEIAGWLGIK--------E--------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL  272 (333)
Q Consensus       221 -----------~~~~~~~~i~~~l~~~--------~--------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~  272 (333)
                                 +.++ +.+.++..+..        +        ....+ .+.++-.|.+.|-.++-+||||++.+..|-
T Consensus      1172 NI~~gld~~~~sd~e-i~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A         1172 NIIYGLDPSSVTMAQ-VEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250 (1321)
T ss_dssp             HHSSSSCTTTSCHHH-HHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTS
T ss_pred             HHhccCCCCCCCHHH-HHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCH
Confidence                       1222 22333333221        0        01122 344556788888888899999999876442


Q ss_pred             hh--c---cCCCCCCCcEEEEeeCChHHHh
Q 046889          273 DR--V---GIPYGNDGCKFLLTSRSRAACN  297 (333)
Q Consensus       273 ~~--l---~~~~~~~g~~vivTTr~~~v~~  297 (333)
                      ..  .   .+.....|+.+|+++|......
T Consensus      1251 ~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A         1251 ESEKVVQEALDRAREGRTCIVIAHRLNTVM 1280 (1321)
T ss_dssp             HHHHHHHHHHTTTSSSSEEEEECSSSSTTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeccCHHHHH
Confidence            21  0   0111223788999999766533

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.38  E-value=0.001  Score=52.85  Aligned_cols=20  Identities=35%  Similarity=0.516  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEI  198 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v  198 (333)
                      .+|+|+|+.|+||||+++.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            37999999999999999999

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.37  E-value=0.0013  Score=61.84  Aligned_cols=48  Identities=23%  Similarity=0.406  Sum_probs=33.2

Q ss_pred             cccccchHHHHHHHHH---HhhcC---------CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIME---AMKDE---------KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~---~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ...+.|.++.+..+..   .+...         -.+-+.|+||+|+|||||++.+.+...
T Consensus        30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3457787766555443   33221         122489999999999999999998764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.36  E-value=0.00011  Score=60.50  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +++|+||+|+|||||++.+.+..
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            89999999999999999998764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.33  E-value=0.00085  Score=66.42  Aligned_cols=125  Identities=11%  Similarity=0.118  Sum_probs=68.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ  257 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k  257 (333)
                      .+-|.++||.|+|||+||+.+.+....  +   .+.+..+      ++.       +  .+.......+...+.......
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~elg~--~---~~~v~~~------~l~-------s--k~~gese~~lr~lF~~A~~~~  297 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANETGA--F---FFLINGP------EIM-------S--KLAGESESNLRKAFEEAEKNA  297 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTTTTC--E---EEEEEHH------HHH-------S--SCTTHHHHHHHHHHHHHTTSC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC--e---EEEEEhH------Hhh-------c--ccchHHHHHHHHHHHHHHHcC
Confidence            457999999999999999999976541  1   2222211      111       0  111111222333344444567


Q ss_pred             ceEEEEeCCCCch--------h-----hhhcc---CCCC-CCCcEEEEeeCChHHHhh-cc-----cceEecCCCCHHHH
Q 046889          258 RVLVILDDLWVQI--------E-----LDRVG---IPYG-NDGCKFLLTSRSRAACNQ-MQ-----AHIVDVRTLTEEES  314 (333)
Q Consensus       258 ~~LlVlDdv~~~~--------~-----~~~l~---~~~~-~~g~~vivTTr~~~v~~~-~~-----~~~~~l~~L~~~e~  314 (333)
                      +++|+||++....        +     ...+.   -.+. ..+..||.||...+.... +.     ...+.+..-+.++-
T Consensus       298 PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R  377 (806)
T 3cf2_A          298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR  377 (806)
T ss_dssp             SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHH
T ss_pred             CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHH
Confidence            8999999886421        0     11111   1111 224556667766543211 11     12377887788888


Q ss_pred             HHHHHhhc
Q 046889          315 WRSAEGKR  322 (333)
Q Consensus       315 ~~lf~~~a  322 (333)
                      .++|+...
T Consensus       378 ~~IL~~~l  385 (806)
T 3cf2_A          378 LEILQIHT  385 (806)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            88887664

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.31  E-value=0.00024  Score=62.52  Aligned_cols=68  Identities=22%  Similarity=0.294  Sum_probs=44.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVV--SQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEK  256 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~  256 (333)
                      +++.|+|++|+|||||+..+... . +.   ...|++.  .+..+             .   ...+.+.....+.+.+..
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~-~-G~---~VlyIs~~~eE~v~-------------~---~~~~le~~l~~i~~~l~~  182 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA-L-GG---KDKYATVRFGEPLS-------------G---YNTDFNVFVDDIARAMLQ  182 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH-H-HT---TSCCEEEEBSCSST-------------T---CBCCHHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh-C-CC---CEEEEEecchhhhh-------------h---hhcCHHHHHHHHHHHHhh
Confidence            36789999999999999999876 1 11   2345555  22211             0   113455566667777777


Q ss_pred             CceEEEEeCCCC
Q 046889          257 QRVLVILDDLWV  268 (333)
Q Consensus       257 k~~LlVlDdv~~  268 (333)
                      .+ +||+|++..
T Consensus       183 ~~-LLVIDsI~a  193 (331)
T 2vhj_A          183 HR-VIVIDSLKN  193 (331)
T ss_dssp             CS-EEEEECCTT
T ss_pred             CC-EEEEecccc
Confidence            66 999998864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.27  E-value=0.00018  Score=60.23  Aligned_cols=29  Identities=21%  Similarity=0.411  Sum_probs=24.1

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +..++  +++|+||+|+|||||++.+.+...
T Consensus        13 ~~~G~--ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           13 MAQGT--LYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             --CCC--EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCCc--EEEEECCCCCCHHHHHHHHhccCC
Confidence            44566  999999999999999999998764

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.26  E-value=0.0022  Score=56.08  Aligned_cols=85  Identities=18%  Similarity=0.132  Sum_probs=49.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH--HHHHHHHHHHhCCCCC---CCCCHHHHHH-HHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI--TKIQDEIAGWLGIKEL---PDNDELVRAS-LLCK  252 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~~~-~l~~  252 (333)
                      .+++++|++|+||||++..+.......+.  .+.++... ....  ...+..+....+....   ...++.++.. .+..
T Consensus        99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~--~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~  175 (295)
T 1ls1_A           99 NLWFLVGLQGSGKTTTAAKLALYYKGKGR--RPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK  175 (295)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHTTC--CEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence            48999999999999999999988764321  23333322 2222  1223345555665421   2234444433 3444


Q ss_pred             HHccCceEEEEeCC
Q 046889          253 RIEKQRVLVILDDL  266 (333)
Q Consensus       253 ~l~~k~~LlVlDdv  266 (333)
                      ....+.-++|+|.+
T Consensus       176 ~~~~~~D~viiDtp  189 (295)
T 1ls1_A          176 ARLEARDLILVDTA  189 (295)
T ss_dssp             HHHHTCCEEEEECC
T ss_pred             HHhCCCCEEEEeCC
Confidence            33456678999987

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.25  E-value=0.00017  Score=58.26  Aligned_cols=25  Identities=12%  Similarity=0.352  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+++|+||+|+|||||++.+.....
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3899999999999999999987653

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.24  E-value=0.0037  Score=57.41  Aligned_cols=28  Identities=29%  Similarity=0.267  Sum_probs=24.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      ..+++++|++|+||||++..+.......
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~  125 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGK  125 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4589999999999999999999887643

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.24  E-value=0.0011  Score=65.83  Aligned_cols=46  Identities=22%  Similarity=0.342  Sum_probs=35.9

Q ss_pred             ccccchHHHHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD---------EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..++|.+..++.+...+..         .....+.++|+.|+|||+||+.+....
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            3467888888777766642         123478999999999999999998876

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.23  E-value=0.0049  Score=53.89  Aligned_cols=87  Identities=20%  Similarity=0.255  Sum_probs=47.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCC---CCCCCCHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS-QTPSITKIQDEIAGWLGIK---ELPDNDELVRASLLCKR  253 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~  253 (333)
                      ..+++++|++|+||||++..+.......+.  .+.++... +.+.....+.......+.+   .....++........+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~--~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~  175 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF--KVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK  175 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTC--CEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence            458999999999999999999887764321  23333332 1122223334444555543   11122344443334444


Q ss_pred             Hc-cCceEEEEeCC
Q 046889          254 IE-KQRVLVILDDL  266 (333)
Q Consensus       254 l~-~k~~LlVlDdv  266 (333)
                      +. .+--++++|-+
T Consensus       176 ~~~~~~D~ViIDTp  189 (297)
T 1j8m_F          176 FLSEKMEIIIVDTA  189 (297)
T ss_dssp             HHHTTCSEEEEECC
T ss_pred             HHhCCCCEEEEeCC
Confidence            43 33346777754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.23  E-value=0.0038  Score=57.44  Aligned_cols=28  Identities=32%  Similarity=0.330  Sum_probs=24.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      ..+|.++|++|+||||++..+.......
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~  124 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR  124 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            5699999999999999999998777643

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.22  E-value=0.00016  Score=59.48  Aligned_cols=24  Identities=29%  Similarity=0.538  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +++|+||+|+|||||++.+.....
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCc
Confidence            799999999999999999987653

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.22  E-value=0.0024  Score=59.54  Aligned_cols=28  Identities=29%  Similarity=0.502  Sum_probs=24.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      ..+++|+|++|+|||||++.+.+.....
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~~~  320 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFEQQ  320 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence            4599999999999999999999887643

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.20  E-value=0.00017  Score=58.69  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .+++|+|++|+|||||++.+...
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            38999999999999999999865

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.20  E-value=0.0022  Score=56.04  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ...+.++||.|+|||+||+.+++...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45788999999999999999998873

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.20  E-value=0.0012  Score=66.56  Aligned_cols=46  Identities=17%  Similarity=0.364  Sum_probs=36.8

Q ss_pred             cccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          158 NFKSRESTMKDIMEAMKDE---------KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .++|.+..++.+...+...         ....+.|+|+.|+|||+||+.+.....
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4689888888887776431         125789999999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.20  E-value=0.00024  Score=58.81  Aligned_cols=26  Identities=35%  Similarity=0.516  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..+|+|+|++|+|||||++.+.+...
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999998765

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.19  E-value=0.0065  Score=56.02  Aligned_cols=29  Identities=34%  Similarity=0.456  Sum_probs=25.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      +..+|.++|++|+||||++..+.......
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            46799999999999999999998777653

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.17  E-value=0.00027  Score=57.99  Aligned_cols=36  Identities=25%  Similarity=0.223  Sum_probs=23.2

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..+++...+..+.  +|.|+|++|+||||+++.+....
T Consensus        14 ~~~~~~~~~~~~~--~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           14 GTENLYFQSNAMV--RIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ----------CCC--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceeEecCCCC--EEEEEcCCCCCHHHHHHHHHHHc
Confidence            3445555555555  89999999999999999998766

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.16  E-value=0.0003  Score=63.04  Aligned_cols=40  Identities=25%  Similarity=0.314  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ....++.+ ..+..++  +++|+|++|+|||||++.+.+....
T Consensus        58 g~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           58 GVRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             SCHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CCEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            34567777 6666777  9999999999999999999998653

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.15  E-value=0.00028  Score=58.03  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..+|+|+|++|+|||||++.+....
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            3499999999999999999998765

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.13  E-value=0.0042  Score=57.19  Aligned_cols=28  Identities=32%  Similarity=0.447  Sum_probs=24.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      +..+|.++|++|+||||++..+......
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            3569999999999999999999877654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.13  E-value=0.00058  Score=60.28  Aligned_cols=28  Identities=29%  Similarity=0.410  Sum_probs=24.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ...+|+|+|++|+|||||++.+.+...+
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            3459999999999999999999988765

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.11  E-value=0.00044  Score=56.80  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=24.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ...+|+|+|++|+|||||++.+.....
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345999999999999999999998875

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.11  E-value=0.0003  Score=57.13  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      .+++|+|++|+|||||++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            3789999999999999999975

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.10  E-value=0.00027  Score=57.63  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +++|+|++|+|||||++.+.+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            689999999999999999998876

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.08  E-value=0.00038  Score=61.24  Aligned_cols=28  Identities=21%  Similarity=0.411  Sum_probs=24.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      ..+++|+|++|+|||||++.+.....+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~~  129 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL  129 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence            3499999999999999999999887653

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.07  E-value=0.0045  Score=54.30  Aligned_cols=85  Identities=11%  Similarity=0.026  Sum_probs=53.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKR  253 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~  253 (333)
                      +++-|.|+.|+|||||+..+.........=..++|++..+..+..     .+++++...     ..+.+.++....+.+.
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~  103 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ  103 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence            378999999999999998887665432112356788777766643     367777641     1123444441223333


Q ss_pred             H---c-cCceEEEEeCCCC
Q 046889          254 I---E-KQRVLVILDDLWV  268 (333)
Q Consensus       254 l---~-~k~~LlVlDdv~~  268 (333)
                      +   . .+.-++|+|-+..
T Consensus       104 l~~i~~~~~~lvVIDSI~a  122 (333)
T 3io5_A          104 LDAIERGEKVVVFIDSLGN  122 (333)
T ss_dssp             HHTCCTTCCEEEEEECSTT
T ss_pred             HHHhhccCceEEEEecccc
Confidence            3   3 3678999997754

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.07  E-value=0.00013  Score=61.11  Aligned_cols=108  Identities=9%  Similarity=-0.024  Sum_probs=57.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC--CCCCCHHHHHHHHHHHHcc
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE--LPDNDELVRASLLCKRIEK  256 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~  256 (333)
                      .++.++|+.|+||||++..+.......+ . .+..+....+.  . ....++.+++...  .......+....+.+.+.+
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~   87 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYAD-V-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN   87 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence            5899999999999999988887765432 2 22333222211  1 1123444555421  1111223344444443433


Q ss_pred             C-ceEEEEeCCCCc--hhhhhccCCCCCCCcEEEEeeCC
Q 046889          257 Q-RVLVILDDLWVQ--IELDRVGIPYGNDGCKFLLTSRS  292 (333)
Q Consensus       257 k-~~LlVlDdv~~~--~~~~~l~~~~~~~g~~vivTTr~  292 (333)
                      . .-+|++|++...  ..++.+ ..+.+.|..||+|-|.
T Consensus        88 ~~~dvViIDEaQ~l~~~~ve~l-~~L~~~gi~Vil~Gl~  125 (223)
T 2b8t_A           88 DETKVIGIDEVQFFDDRICEVA-NILAENGFVVIISGLD  125 (223)
T ss_dssp             TTCCEEEECSGGGSCTHHHHHH-HHHHHTTCEEEEECCS
T ss_pred             CCCCEEEEecCccCcHHHHHHH-HHHHhCCCeEEEEecc
Confidence            3 459999988632  222222 1112237889999984

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.07  E-value=0.0006  Score=60.31  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=31.9

Q ss_pred             cchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          160 KSRESTMKDIMEAMKD----EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +|....+..+...+..    +...+|+|.|++|+|||||++.+.....
T Consensus        70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4444555555544433    2456999999999999999999987765

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.07  E-value=0.0039  Score=55.77  Aligned_cols=89  Identities=15%  Similarity=0.179  Sum_probs=54.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------CCCCC
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKK----MFDEVAMAVVSQTPSITKIQDEIAGWLGIKE------------LPDND  242 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~------------~~~~~  242 (333)
                      .++.|.|++|+|||||+..+........    .-...+|++....++...+. .++..++...            .....
T Consensus       123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e~  201 (343)
T 1v5w_A          123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSEH  201 (343)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTTH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHHH
Confidence            4899999999999999999887632111    12456788777766655443 4455555421            11111


Q ss_pred             HHHHHHHHHHHHc---cCceEEEEeCCCC
Q 046889          243 ELVRASLLCKRIE---KQRVLVILDDLWV  268 (333)
Q Consensus       243 ~~~~~~~l~~~l~---~k~~LlVlDdv~~  268 (333)
                      ..+....+...+.   .+.-+||+|.+..
T Consensus       202 ~~~ll~~l~~~i~~~~~~~~lvVIDsl~~  230 (343)
T 1v5w_A          202 QMELLDYVAAKFHEEAGIFKLLIIDSIMA  230 (343)
T ss_dssp             HHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred             HHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence            2233444555554   4567999998754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.07  E-value=0.00048  Score=60.55  Aligned_cols=27  Identities=33%  Similarity=0.485  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      .+++|+|++|+|||||++.+.+.....
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l~~~  127 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRLKNE  127 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            499999999999999999999887643

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.06  E-value=0.00041  Score=59.22  Aligned_cols=41  Identities=24%  Similarity=0.307  Sum_probs=33.6

Q ss_pred             chHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          161 SRESTMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       161 gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +....++++...+..   +.  +|+|+|++|+||||+++.+.....
T Consensus        30 ~~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           30 EEQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             --CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CcchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhcC
Confidence            445678888888877   77  899999999999999999988653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.06  E-value=0.00028  Score=56.29  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +|+|+|++|+|||||++.+.....
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            799999999999999999987653

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.05  E-value=0.00024  Score=65.15  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=30.8

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      |... ++.+...+..|....++|+|++|+|||||++.+++.
T Consensus        26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            4334 888888888888323999999999999999999865

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.03  E-value=0.00044  Score=66.86  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=42.2

Q ss_pred             cccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          154 EGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       154 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .....++|.+..++.+...+..+.  .+.|+|++|+||||||+.+.+...
T Consensus        38 ~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           38 KLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             SHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             cccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCC
Confidence            345678999999999999998886  899999999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.03  E-value=0.00038  Score=57.19  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +++|+|++|+|||||++.+....
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            89999999999999999998765

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.02  E-value=0.00097  Score=58.21  Aligned_cols=29  Identities=24%  Similarity=0.193  Sum_probs=25.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ++..+|+|+|++|+|||||++.+......
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            45679999999999999999999887764

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.02  E-value=0.00079  Score=60.62  Aligned_cols=88  Identities=17%  Similarity=0.153  Sum_probs=50.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCC---CCCCCCHHH-----
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-MFDEVAMAVVSQTPSITKIQDEIAGWLGIK---ELPDNDELV-----  245 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~-----  245 (333)
                      .++  .++|+|++|+|||||++.+........ .+ .++++-+.+....   ..++.+.+...   .....+...     
T Consensus       173 rGQ--r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v-~~I~~lIGER~~E---v~~~~~~~~~~vV~atadep~~~r~~~a  246 (422)
T 3ice_A          173 RGQ--RGLIVAPPKAGKTMLLQNIAQSIAYNHPDC-VLMVLLIDERPEE---VTEMQRLVKGEVVASTFDEPASRHVQVA  246 (422)
T ss_dssp             TTC--EEEEECCSSSSHHHHHHHHHHHHHHHCTTS-EEEEEEESSCHHH---HHHHHTTCSSEEEEECTTSCHHHHHHHH
T ss_pred             CCc--EEEEecCCCCChhHHHHHHHHHHhhcCCCe-eEEEEEecCChHH---HHHHHHHhCeEEEEeCCCCCHHHHHHHH
Confidence            455  899999999999999999987765432 22 2445667765432   22233333110   112222221     


Q ss_pred             -HHHHHHHHHc--cCceEEEEeCCCC
Q 046889          246 -RASLLCKRIE--KQRVLVILDDLWV  268 (333)
Q Consensus       246 -~~~~l~~~l~--~k~~LlVlDdv~~  268 (333)
                       ....+.+++.  ++..|+++||+..
T Consensus       247 ~~alt~AEyfrd~G~dVLil~DslTR  272 (422)
T 3ice_A          247 EMVIEKAKRLVEHKKDVIILLDSITR  272 (422)
T ss_dssp             HHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCchH
Confidence             1222344443  5889999999864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.02  E-value=0.0033  Score=55.70  Aligned_cols=88  Identities=16%  Similarity=0.174  Sum_probs=55.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhc----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCCCCHH--
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKK----MFDEVAMAVVSQTPSITKIQDEIAGWLGIKE---------LPDNDEL--  244 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~--  244 (333)
                      ++.|.|++|+|||||+..+........    .-..++|++....++...+. .++..++...         ....+..  
T Consensus       109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~~~  187 (324)
T 2z43_A          109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTDHQ  187 (324)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred             EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHHHH
Confidence            899999999999999999886642111    02356788777766655544 4456665521         0112223  


Q ss_pred             -HHHHHHHHHHc--cCceEEEEeCCCC
Q 046889          245 -VRASLLCKRIE--KQRVLVILDDLWV  268 (333)
Q Consensus       245 -~~~~~l~~~l~--~k~~LlVlDdv~~  268 (333)
                       +....+...+.  .+.-+||+|.+..
T Consensus       188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~  214 (324)
T 2z43_A          188 IAIVDDLQELVSKDPSIKLIVVDSVTS  214 (324)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence             23445555554  3567999998753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.00  E-value=0.00038  Score=57.59  Aligned_cols=25  Identities=28%  Similarity=0.513  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+++|+||+|+|||||++.+.....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4899999999999999999987653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.00  E-value=0.00084  Score=59.16  Aligned_cols=28  Identities=29%  Similarity=0.358  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +...+|+|+|++|+|||||++.+.+...
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3446999999999999999999998764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.99  E-value=0.00028  Score=63.76  Aligned_cols=121  Identities=16%  Similarity=0.162  Sum_probs=62.2

Q ss_pred             HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCCCCC-CCHH
Q 046889          167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLG-IKELPD-NDEL  244 (333)
Q Consensus       167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~-~~~~~~-~~~~  244 (333)
                      +.+...+..++  +++|+|++|+|||||++.+.+...+.   ...+.+.-......... +.....+. ...... ....
T Consensus       166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~-~~~v~~v~~q~~~~~~~~~~  239 (361)
T 2gza_A          166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDH-PNHVHLFYPSEAKEEENAPV  239 (361)
T ss_dssp             HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTC-SSEEEEECC----------C
T ss_pred             HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCcccc-CCEEEEeecCcccccccccc
Confidence            66777777777  89999999999999999998776432   22333321111110000 00000000 000000 0011


Q ss_pred             HHHHHHHHHHccCceEEEEeCCCCchhhhhcc-CCCCCCCcEEEEeeCChHH
Q 046889          245 VRASLLCKRIEKQRVLVILDDLWVQIELDRVG-IPYGNDGCKFLLTSRSRAA  295 (333)
Q Consensus       245 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~-~~~~~~g~~vivTTr~~~v  295 (333)
                      .....+...+...+-.+++|++.....+..+. ++.+  ...++.|+|....
T Consensus       240 t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g--~~~~l~t~H~~~~  289 (361)
T 2gza_A          240 TAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASG--HGGSITSCHAGSC  289 (361)
T ss_dssp             CHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTT--CCSCEEEEECSSH
T ss_pred             CHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcC--CCeEEEEECCCCH
Confidence            23445666666677788899887654443331 2221  2235778887654

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.99  E-value=0.004  Score=56.14  Aligned_cols=81  Identities=21%  Similarity=0.192  Sum_probs=53.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKRI  254 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l  254 (333)
                      ++.|.|++|+|||||+..+........  ..++|++....++..     .+..++...     ....+.++....+...+
T Consensus        76 li~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~  148 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLV  148 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence            899999999999999998876654322  357788887766543     245555531     12234555555565555


Q ss_pred             cc-CceEEEEeCCC
Q 046889          255 EK-QRVLVILDDLW  267 (333)
Q Consensus       255 ~~-k~~LlVlDdv~  267 (333)
                      .. +.-+||+|.+.
T Consensus       149 ~~~~~~lVVIDsl~  162 (366)
T 1xp8_A          149 RSGAIDVVVVDSVA  162 (366)
T ss_dssp             TTTCCSEEEEECTT
T ss_pred             hcCCCCEEEEeChH
Confidence            44 45699999764

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.99  E-value=0.007  Score=56.03  Aligned_cols=91  Identities=18%  Similarity=0.230  Sum_probs=52.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHHH-H
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDELV-R  246 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~-~  246 (333)
                      .++  .++|+|++|+|||||++.+......... ...+++.+.+..+ ..++.+.+...-.+.      .....++.. .
T Consensus       150 kGq--~~~i~G~sGvGKTtL~~~l~~~~~~~~~-~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~  226 (473)
T 1sky_E          150 KGG--KIGLFGGAGVGKTVLIQELIHNIAQEHG-GISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARM  226 (473)
T ss_dssp             TTC--EEEEECCSSSCHHHHHHHHHHHHHHHTC-CCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHH
T ss_pred             cCC--EEEEECCCCCCccHHHHHHHhhhhhccC-cEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHH
Confidence            455  7999999999999999999887654332 3345666665533 233333333210000      111222211 1


Q ss_pred             -----HHHHHHHH---ccCceEEEEeCCCC
Q 046889          247 -----ASLLCKRI---EKQRVLVILDDLWV  268 (333)
Q Consensus       247 -----~~~l~~~l---~~k~~LlVlDdv~~  268 (333)
                           ...+.+++   ++++.|+++||+..
T Consensus       227 ~~~~~~ltiAEyFrd~~G~~VLl~~D~itR  256 (473)
T 1sky_E          227 RVALTGLTMAEYFRDEQGQDGLLFIDNIFR  256 (473)
T ss_dssp             HHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence                 22445554   46789999999853

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.99  E-value=0.00052  Score=54.88  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+++|+|++|+|||||++.+....
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhh
Confidence            489999999999999999998764

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.99  E-value=0.0011  Score=61.90  Aligned_cols=47  Identities=21%  Similarity=0.252  Sum_probs=35.3

Q ss_pred             ccccchHHHHHHHHH---HhhcCC--ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIME---AMKDEK--VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~---~l~~~~--~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..++|.+..++.+..   .+..+.  .+-+.++||.|+|||+||+.+.....
T Consensus        37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            568898887765444   333332  24688999999999999999998864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.98  E-value=0.00043  Score=61.87  Aligned_cols=40  Identities=18%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ...++.+...+..  ..+++|+|++|+|||||++.+.+....
T Consensus        42 ~~~l~~i~~~~~~--g~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           42 RDLIDAVLPQTGR--AIRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             HHHHHHHGGGCCC--SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcccCC--CeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            3445555443333  349999999999999999999987654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.97  E-value=0.00016  Score=60.91  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=15.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH-HHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQ-KQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~-~~~  202 (333)
                      +++|+||+|+|||||++.+. ...
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC---
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            89999999999999999998 664

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.96  E-value=0.00063  Score=62.97  Aligned_cols=40  Identities=13%  Similarity=0.342  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ....++.+ ..+..++  +++|+|++|+|||||++.+.+....
T Consensus       144 g~~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          144 GVRAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             SCHHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CceEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhcccCC
Confidence            34577777 6666777  9999999999999999999988643

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.94  E-value=0.00044  Score=59.74  Aligned_cols=25  Identities=36%  Similarity=0.567  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .++|+|++|+|||||++.+++...+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5899999999999999999987643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.93  E-value=0.00072  Score=60.77  Aligned_cols=26  Identities=35%  Similarity=0.488  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .+++|+|++|+|||||++.+.+....
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag~l~~  183 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAHRLKN  183 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHhhccc
Confidence            49999999999999999999988764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.93  E-value=0.00054  Score=58.22  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..+|+|+|++|+|||||++.+....
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3499999999999999999998554

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.91  E-value=0.0048  Score=55.40  Aligned_cols=81  Identities=17%  Similarity=0.158  Sum_probs=51.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKRI  254 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l  254 (333)
                      ++.|.|++|+|||||+..+........  ..++|++.....+..     .+..++...     ....+.++....+....
T Consensus        65 ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~  137 (356)
T 1u94_A           65 IVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALA  137 (356)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence            899999999999999999887654322  357788877666533     245555431     11223444444444443


Q ss_pred             c-cCceEEEEeCCC
Q 046889          255 E-KQRVLVILDDLW  267 (333)
Q Consensus       255 ~-~k~~LlVlDdv~  267 (333)
                      . .+.-+||+|.+.
T Consensus       138 ~~~~~~lVVIDsl~  151 (356)
T 1u94_A          138 RSGAVDVIVVDSVA  151 (356)
T ss_dssp             HHTCCSEEEEECGG
T ss_pred             hccCCCEEEEcCHH
Confidence            3 456699999764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.89  E-value=0.00063  Score=54.02  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|.|+.|+||||+++.+....
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999998765

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.88  E-value=0.0048  Score=54.86  Aligned_cols=96  Identities=16%  Similarity=0.096  Sum_probs=57.0

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHh-----------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWL-----------  233 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l-----------  233 (333)
                      .++.+..-+..+.  ++.|.|++|+|||||+..+.......+  ..+.|++...  +...+...++...           
T Consensus        35 ~LD~~~gGl~~G~--LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSlEm--s~~ql~~Rlls~~~~v~~~~l~~g  108 (338)
T 4a1f_A           35 QLDNYTSGFNKGS--LVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSLEM--SAEQLALRALSDLTSINMHDLESG  108 (338)
T ss_dssp             HHHHHHCSBCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEESSS--CHHHHHHHHHHHHHCCCHHHHHHT
T ss_pred             HHHHHhcCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCC--CHHHHHHHHHHHhhCCCHHHHhcC
Confidence            4445444445566  899999999999999999987765421  3455555432  3344444332211           


Q ss_pred             ----------------------CCCCCCCCCHHHHHHHHHHHHcc--CceEEEEeCC
Q 046889          234 ----------------------GIKELPDNDELVRASLLCKRIEK--QRVLVILDDL  266 (333)
Q Consensus       234 ----------------------~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv  266 (333)
                                            ...+....+..++...+++....  +.-+||+|-+
T Consensus       109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyL  165 (338)
T 4a1f_A          109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYL  165 (338)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEech
Confidence                                  01122334566666666665544  4679999954

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.87  E-value=0.0065  Score=53.58  Aligned_cols=60  Identities=15%  Similarity=0.236  Sum_probs=38.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .++.+..-+..+.  ++.|.|++|+|||||+..+......++  ..+.|++...  +...+...++
T Consensus        57 ~LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~--s~~~l~~R~~  116 (315)
T 3bh0_A           57 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLI  116 (315)
T ss_dssp             HHHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS--CHHHHHHHHH
T ss_pred             HHHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHH
Confidence            4455543345566  899999999999999999886654332  4566666543  3344444433

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.87  E-value=0.00098  Score=61.05  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..+++|+|++|+|||||++.+.+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCC
Confidence            3489999999999999999999743

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.87  E-value=0.00064  Score=55.65  Aligned_cols=24  Identities=17%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ++++|+||+|+|||||++.+....
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhC
Confidence            489999999999999999998764

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.86  E-value=0.00091  Score=59.43  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=37.8

Q ss_pred             ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..++|++..++.+...+..++  -+.++|+.|+|||+||+.+.+..
T Consensus        27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred             cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence            457899999998888887765  68899999999999999998765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.84  E-value=0.00071  Score=56.50  Aligned_cols=24  Identities=38%  Similarity=0.551  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|+|+|++|+||||+++.+....
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            389999999999999999998654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.83  E-value=0.0013  Score=58.57  Aligned_cols=38  Identities=18%  Similarity=0.317  Sum_probs=28.9

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ++.+...+..++...|.|+|++|+||||+++.+.....
T Consensus        12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            33444444567766799999999999999999887654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.82  E-value=0.0006  Score=55.97  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|+|+|++|+|||||++.+....
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999998775

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.81  E-value=0.0005  Score=55.07  Aligned_cols=27  Identities=33%  Similarity=0.537  Sum_probs=24.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      .+++|+|++|+|||||++.+.......
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            489999999999999999999887764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.79  E-value=0.00079  Score=53.88  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|+|++|+||||+++.+....
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            379999999999999999998765

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.77  E-value=0.001  Score=53.71  Aligned_cols=28  Identities=25%  Similarity=0.375  Sum_probs=24.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ...+|.|+|++|+||||+++.+......
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            3458999999999999999999988764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.77  E-value=0.0064  Score=56.55  Aligned_cols=98  Identities=14%  Similarity=0.176  Sum_probs=58.1

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH-HhCCC-------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG-WLGIK-------  236 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~-~l~~~-------  236 (333)
                      .++.+..-+..+.  ++.|.|++|+|||||+..+......... ..+.|++...  +...+...++. .++..       
T Consensus       192 ~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g  266 (454)
T 2r6a_A          192 ELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTG  266 (454)
T ss_dssp             HHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTS
T ss_pred             HHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcC
Confidence            4555554455566  8999999999999999999887654322 2455655433  33344433321 11110       


Q ss_pred             -------------------------CCCCCCHHHHHHHHHHHHcc-CceEEEEeCCC
Q 046889          237 -------------------------ELPDNDELVRASLLCKRIEK-QRVLVILDDLW  267 (333)
Q Consensus       237 -------------------------~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~  267 (333)
                                               +....+..++...+.+.... +.-+||+|.+.
T Consensus       267 ~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~  323 (454)
T 2r6a_A          267 KLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQ  323 (454)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGG
T ss_pred             CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHH
Confidence                                     11223566666666655533 56799999764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.77  E-value=0.00078  Score=55.31  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      .+|+|+|++|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999987

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.75  E-value=0.0037  Score=55.30  Aligned_cols=88  Identities=19%  Similarity=0.178  Sum_probs=54.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhc---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKK---------MF-----DEVAMAVVSQTPSITKIQDEIAGWLGIKE-------  237 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~---------~f-----~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-------  237 (333)
                      .++.|.|++|+|||||+..+........         ..     ..++|++....++...+. .++..++...       
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l  177 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLDNT  177 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHHTE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhcCE
Confidence            4899999999999999999886532110         11     356777777666655544 4456665531       


Q ss_pred             --CCCCCHH---HHHHHHHHHHcc--CceEEEEeCCC
Q 046889          238 --LPDNDEL---VRASLLCKRIEK--QRVLVILDDLW  267 (333)
Q Consensus       238 --~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv~  267 (333)
                        ....+.+   +....+...+..  +.-+||+|.+.
T Consensus       178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~  214 (322)
T 2i1q_A          178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT  214 (322)
T ss_dssp             EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence              1112223   234455555554  45699999875

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.75  E-value=0.028  Score=52.75  Aligned_cols=28  Identities=29%  Similarity=0.343  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      +..+|+|+|++|+||||++..+......
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~  127 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR  127 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4569999999999999999999876653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.72  E-value=0.0022  Score=53.40  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ...+.+...+.......|+|+|.+|+|||||+..+.....
T Consensus        24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3445555555556678999999999999999999987653

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.71  E-value=0.00096  Score=54.88  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      .+|+|+|++|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999965

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.69  E-value=0.0012  Score=56.51  Aligned_cols=24  Identities=25%  Similarity=0.291  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|+|++|+|||||++.+....
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            478999999999999999998765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.68  E-value=0.001  Score=56.76  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|+|+|++|+|||||++.+....
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhc
Confidence            399999999999999999998543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.66  E-value=0.0012  Score=52.87  Aligned_cols=22  Identities=36%  Similarity=0.422  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      .+|.|.|++|+||||+++.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4799999999999999999986

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.65  E-value=0.00091  Score=55.05  Aligned_cols=24  Identities=33%  Similarity=0.714  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|+|++|+|||||++.+....
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            389999999999999999998765

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.65  E-value=0.0015  Score=59.14  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=26.3

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ++.+...+..++  +++|+||+|+|||||++.+.+..
T Consensus       159 l~~~~~~i~~~~--~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          159 LKCMVYNIPKKR--YWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHHCCTTCC--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhcccccCCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence            334443334445  99999999999999999999754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.64  E-value=0.002  Score=53.43  Aligned_cols=42  Identities=21%  Similarity=0.310  Sum_probs=32.1

Q ss_pred             hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..+..+.+...+......+|+|+|.+|+|||||+..+.....
T Consensus        14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            344555555555556678999999999999999999987753

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.63  E-value=0.0015  Score=61.39  Aligned_cols=44  Identities=14%  Similarity=0.190  Sum_probs=38.3

Q ss_pred             ccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..++|++..++.+...+..+.  -+.|+|++|+|||+||+.+....
T Consensus        22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred             hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence            457899999999888887776  78999999999999999998765

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.63  E-value=0.0014  Score=52.95  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+|.|.|+.|+||||+++.+.....
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999988765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.61  E-value=0.0011  Score=53.88  Aligned_cols=23  Identities=39%  Similarity=0.546  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|.|+||+|+|||||++.+....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57899999999999999988664

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.61  E-value=0.0014  Score=58.46  Aligned_cols=48  Identities=19%  Similarity=0.270  Sum_probs=34.8

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ...++|.+.....+...+..+...-+.|+|+.|+|||+||+.+.....
T Consensus        23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence            456888887666554444322223488999999999999999998653

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.60  E-value=0.0014  Score=52.80  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|.|+|+.|+||||+++.+....
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998765

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.60  E-value=0.0012  Score=53.18  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +.+|+|+||+|||||+..++.-.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHH
Confidence            88999999999999999998654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.58  E-value=0.0018  Score=51.56  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..+++|+|+.|+|||||+..+......
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            458999999999999999999987764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.58  E-value=0.0015  Score=52.72  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+|.|.|+.|+||||+++.+.....
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3899999999999999999988765

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.57  E-value=0.0013  Score=62.03  Aligned_cols=40  Identities=18%  Similarity=0.147  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ...++.+...+..+.  +++|+|++|+|||||++.+.+....
T Consensus       247 ~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          247 SGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             HHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCCC
Confidence            345566666666676  6999999999999999999877643

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.56  E-value=0.0015  Score=53.38  Aligned_cols=24  Identities=42%  Similarity=0.555  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +|+|.|+.|+||||+++.+.....
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999988764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.56  E-value=0.0015  Score=53.76  Aligned_cols=25  Identities=52%  Similarity=0.663  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..+|+|+|++|+|||||++.+....
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3589999999999999999997653

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.55  E-value=0.011  Score=52.20  Aligned_cols=28  Identities=29%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      ..+++|+|++|+||||++..+.......
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~  132 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAEL  132 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            3599999999999999999998877643

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.55  E-value=0.0013  Score=52.64  Aligned_cols=24  Identities=33%  Similarity=0.405  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +|.|+|++|+||||+++.+.....
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999987653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.54  E-value=0.002  Score=52.20  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..+|.|.|+.|+||||+++.+....
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            3589999999999999999998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.51  E-value=0.0015  Score=53.03  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -.++|+|++|+|||||++.+.+..
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            478999999999999999998764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.51  E-value=0.0019  Score=52.02  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|+|+.|+||||+++.+....
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998755

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=96.48  E-value=0.023  Score=52.57  Aligned_cols=91  Identities=19%  Similarity=0.234  Sum_probs=57.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCC------------CCCCC
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPS-ITKIQDEIAGWLGIK------------ELPDN  241 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~------------~~~~~  241 (333)
                      .++  .++|+|+.|+|||+|+..+...... .+-+.++++-+.+..+ ..++.+.+...=.+.            ...+.
T Consensus       152 kGQ--r~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~  228 (482)
T 2ck3_D          152 KGG--KIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNE  228 (482)
T ss_dssp             TTC--EEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTS
T ss_pred             cCC--eeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCC
Confidence            355  8999999999999999999876532 2345677777887654 345666665542221            11122


Q ss_pred             CHH------HHHHHHHHHHcc---CceEEEEeCCCC
Q 046889          242 DEL------VRASLLCKRIEK---QRVLVILDDLWV  268 (333)
Q Consensus       242 ~~~------~~~~~l~~~l~~---k~~LlVlDdv~~  268 (333)
                      +..      .....+.+++.+   +..||++||+..
T Consensus       229 p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR  264 (482)
T 2ck3_D          229 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR  264 (482)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence            222      123346666654   789999999853

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.48  E-value=0.0019  Score=52.70  Aligned_cols=26  Identities=35%  Similarity=0.484  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ++..+|+|+|+.|+||||+++.+...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            44568999999999999999998764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.46  E-value=0.0036  Score=54.47  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ...+|.|.|++|+||||+++.+....
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.45  E-value=0.0041  Score=49.79  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .+|+|+|++|+||||+++.+......
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            48999999999999999999887654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.41  E-value=0.0026  Score=50.97  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..+++|+|++|+|||||++.+......
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            458999999999999999999887653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.41  E-value=0.0036  Score=57.43  Aligned_cols=28  Identities=25%  Similarity=0.270  Sum_probs=24.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .-.+++|+|++|+|||||++.+.+....
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            3359999999999999999999987653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.41  E-value=0.0021  Score=54.71  Aligned_cols=28  Identities=21%  Similarity=0.372  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +...+|+|.|+.|+||||+++.+.....
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4556899999999999999999987543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.41  E-value=0.002  Score=52.58  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..|+|+|++|+|||||++.+.+.
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.40  E-value=0.0018  Score=51.98  Aligned_cols=24  Identities=42%  Similarity=0.578  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|+|+.|+||||+++.+....
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHh
Confidence            378899999999999999998765

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.39  E-value=0.0034  Score=59.69  Aligned_cols=47  Identities=17%  Similarity=0.277  Sum_probs=33.5

Q ss_pred             cccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          158 NFKSRESTMKDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .++.+......+.....  -.+-.+++|+|++|+|||||++.+......
T Consensus       347 ~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          347 EWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             TTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             ccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence            34555556655655431  122348999999999999999999988764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.39  E-value=0.0018  Score=58.48  Aligned_cols=26  Identities=23%  Similarity=0.371  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..++|+|++|+|||||++.+.+...+
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            48999999999999999999987654

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.39  E-value=0.0036  Score=56.34  Aligned_cols=45  Identities=24%  Similarity=0.203  Sum_probs=35.0

Q ss_pred             cccchHHHHHHHHHHhh-------------c--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          158 NFKSRESTMKDIMEAMK-------------D--EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .++|.+..++.+...+.             .  .....+.++||+|+|||++|+.+....
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            35888888888777662             0  023468999999999999999998876

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.38  E-value=0.0025  Score=51.52  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|+|.|+.|+||||+++.+....
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999987654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.38  E-value=0.0018  Score=57.30  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=22.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +..+++|+|++|+|||||++.+....
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc
Confidence            35799999999999999999998764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.37  E-value=0.0058  Score=51.73  Aligned_cols=27  Identities=22%  Similarity=0.169  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ....+|.|.|+.|+||||+++.+....
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            355689999999999999999998665

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.37  E-value=0.0012  Score=54.47  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +|+|.|+.|+||||+++.+.....
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999988765

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.37  E-value=0.0019  Score=60.27  Aligned_cols=26  Identities=19%  Similarity=0.290  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .+++|+|++|+|||||++.+.+...+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p   55 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIP   55 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence            59999999999999999999987654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.36  E-value=0.0044  Score=51.17  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..+|.|+|+.|+||||+++.+.....
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35899999999999999999988776

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.36  E-value=0.0028  Score=51.85  Aligned_cols=27  Identities=33%  Similarity=0.474  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+..+|+|.|+.|+||||+++.+....
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            345689999999999999999998654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.34  E-value=0.0025  Score=51.40  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..+|.|+|+.|+||||+++.+...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            348999999999999999999875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.34  E-value=0.0024  Score=49.72  Aligned_cols=24  Identities=33%  Similarity=0.432  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ++.+|+|+||+|||||+..++--.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            488999999999999999887543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.32  E-value=0.0021  Score=55.58  Aligned_cols=23  Identities=30%  Similarity=0.619  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +.|+|++|+|||||++.+.+...
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            89999999999999999998764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.31  E-value=0.0012  Score=55.37  Aligned_cols=23  Identities=35%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .+|+|.|++|+|||||++.+.+.
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            59999999999999999998765

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.30  E-value=0.0032  Score=51.19  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+|+|.|+.|+||||+++.+.....
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3899999999999999999987653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.30  E-value=0.0029  Score=51.95  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .+|.|.|+.|+||||+++.+......
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            48999999999999999999887653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.29  E-value=0.0037  Score=55.98  Aligned_cols=35  Identities=26%  Similarity=0.503  Sum_probs=26.2

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ++.|...+ .+.  +++|+|++|+|||||++.+.+...
T Consensus       206 l~~L~~~~-~G~--~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          206 LKPLEEAL-TGR--ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             HHHHHHHH-TTS--EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             HHHHHHhc-CCC--EEEEECCCCccHHHHHHHHhcccc
Confidence            33444433 455  899999999999999999986543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.29  E-value=0.0026  Score=51.54  Aligned_cols=24  Identities=33%  Similarity=0.430  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|+|+.|+||||+++.+....
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999998765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.29  E-value=0.0039  Score=53.10  Aligned_cols=26  Identities=35%  Similarity=0.394  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ...+|.|+|++|+||||+++.+....
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            34689999999999999999998765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.27  E-value=0.003  Score=50.04  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..+|+|.|+.|+||||+++.+.....
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999987653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.27  E-value=0.0022  Score=51.66  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +|.|+|+.|+||||+++.+.....
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999987653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.25  E-value=0.003  Score=51.10  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +|+|.|+.|+||||+++.+.....
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999988764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.25  E-value=0.0031  Score=49.82  Aligned_cols=24  Identities=21%  Similarity=0.148  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .|.|.|+.|+||||+++.+.....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999987653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.25  E-value=0.0025  Score=50.63  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+|.|.|+.|+||||+++.+.....
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3689999999999999999987653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.24  E-value=0.0041  Score=54.55  Aligned_cols=33  Identities=15%  Similarity=0.485  Sum_probs=25.1

Q ss_pred             HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +.|...+ .+.  +++|+|++|+|||||++.+. ...
T Consensus       157 ~~L~~~l-~G~--i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          157 DELVDYL-EGF--ICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             HHHHHHT-TTC--EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             HHHHhhc-cCc--EEEEECCCCCCHHHHHHHHH-Hhh
Confidence            3444433 355  89999999999999999998 543

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.24  E-value=0.0032  Score=50.78  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|+|.|+.|+||||+++.+....
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.20  E-value=0.004  Score=57.40  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..+|+|+|++|+||||++..+......
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~  125 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQK  125 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            358999999999999999999877653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.18  E-value=0.0039  Score=51.86  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..++|.|+||+|+||+|.++.+.....
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            456999999999999999999987653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.17  E-value=0.0035  Score=52.74  Aligned_cols=24  Identities=17%  Similarity=0.502  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|+|.|++|+||||+++.+....
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999998665

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.17  E-value=0.0034  Score=51.90  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|+|.|+.|+||||+++.+....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999997664

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.17  E-value=0.0036  Score=53.57  Aligned_cols=26  Identities=31%  Similarity=0.520  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..+|.|+|++|+||||+++.+.....
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35899999999999999999988754

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.17  E-value=0.018  Score=46.84  Aligned_cols=110  Identities=15%  Similarity=0.073  Sum_probs=56.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC---CCCHHHHHHHHHHHhCCC------CCCCC--CH----
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ---TPSITKIQDEIAGWLGIK------ELPDN--DE----  243 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~i~~~l~~~------~~~~~--~~----  243 (333)
                      ..|.|++.+|.||||+|--+.-..-- ..+. +.++...+   ......++    +.++..      .+...  +.    
T Consensus        29 g~i~v~tG~GkGKTTaA~GlalRA~g-~G~r-V~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~~  102 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAARAVG-HGKN-VGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREADT  102 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHH-TTCC-EEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHH-CCCe-EEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHHH
Confidence            36777778889999999887766542 2232 33333222   22233333    333211      11111  11    


Q ss_pred             ---HHHHHHHHHHHccCc-eEEEEeCCCCc--------hhhhhccCCCCCCCcEEEEeeCChHH
Q 046889          244 ---LVRASLLCKRIEKQR-VLVILDDLWVQ--------IELDRVGIPYGNDGCKFLLTSRSRAA  295 (333)
Q Consensus       244 ---~~~~~~l~~~l~~k~-~LlVlDdv~~~--------~~~~~l~~~~~~~g~~vivTTr~~~v  295 (333)
                         ......+.+.+.+.+ -|||||++-..        .++..+... ......||+|+|+..-
T Consensus       103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~  165 (196)
T 1g5t_A          103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHR  165 (196)
T ss_dssp             HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCH
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcH
Confidence               112334555555544 59999988432        223333221 2235679999998743

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.16  E-value=0.0039  Score=50.95  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..+|.|+|+.|+||||+++.+....
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3489999999999999999998765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.15  E-value=0.0036  Score=51.46  Aligned_cols=31  Identities=23%  Similarity=0.177  Sum_probs=25.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE  210 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~  210 (333)
                      .+|+|.|+.|+||||+++.+...... .+++.
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~   41 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV   41 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence            48999999999999999999887653 24444

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.12  E-value=0.0025  Score=51.14  Aligned_cols=24  Identities=33%  Similarity=0.468  Sum_probs=17.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|.|+.|+||||+++.+....
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            489999999999999999997654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.11  E-value=0.035  Score=51.33  Aligned_cols=61  Identities=15%  Similarity=0.211  Sum_probs=38.2

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .++.+..-+..+.  ++.|.|++|+|||||+..+......... ..++|++...  +...+...++
T Consensus       189 ~LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE~--~~~~l~~R~~  249 (444)
T 2q6t_A          189 ELDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLEM--PAAQLTLRMM  249 (444)
T ss_dssp             HHHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSS--CHHHHHHHHH
T ss_pred             hhhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECCC--CHHHHHHHHH
Confidence            3444443344555  8999999999999999999877653222 2455655433  3444544443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.10  E-value=0.0078  Score=50.47  Aligned_cols=27  Identities=30%  Similarity=0.465  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..+|+|.|++|+||||+++.+......
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            358999999999999999999988764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.10  E-value=0.0041  Score=51.62  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|.|.|+.|+||||+++.+....
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            479999999999999999998765

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=96.09  E-value=0.022  Score=52.95  Aligned_cols=88  Identities=19%  Similarity=0.246  Sum_probs=57.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH-HHHHHHHHHHhCCC-------------CCCCCCHH-
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI-TKIQDEIAGWLGIK-------------ELPDNDEL-  244 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~~l~~~-------------~~~~~~~~-  244 (333)
                      .++|+|..|+|||+|+..+.+.... .+-+.++++-+.+..+. .++.+++...=.+.             ...+.+.. 
T Consensus       167 r~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~  245 (498)
T 1fx0_B          167 KIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGA  245 (498)
T ss_dssp             CEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHH
T ss_pred             eEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHH
Confidence            7999999999999999999877532 23467788888876643 45566665432121             11122221 


Q ss_pred             -----HHHHHHHHHHcc---CceEEEEeCCCC
Q 046889          245 -----VRASLLCKRIEK---QRVLVILDDLWV  268 (333)
Q Consensus       245 -----~~~~~l~~~l~~---k~~LlVlDdv~~  268 (333)
                           .....+.+++.+   +..||++||+..
T Consensus       246 R~~~~~~altiAEyfrd~~G~dVLl~~DsitR  277 (498)
T 1fx0_B          246 RMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR  277 (498)
T ss_dssp             HTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence                 234457777765   789999999853

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.08  E-value=0.0041  Score=51.22  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .+|+|.|+.|+||||+++.+......
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~~   35 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALCA   35 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999987653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.08  E-value=0.0039  Score=51.67  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      .+|+|.|+.|+||||+++.+..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.03  E-value=0.0047  Score=50.32  Aligned_cols=25  Identities=28%  Similarity=0.601  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ...+|+|+|+.|+||||+++.+...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.02  E-value=0.0046  Score=50.61  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +|+|.|+.|+||||+++.+....
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999998765

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.01  E-value=0.0042  Score=51.34  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|+|+|+.|+||||+++.+....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999987653

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.01  E-value=0.0039  Score=51.85  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..|.|.|+.|+||||+++.+.....
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4789999999999999999987653

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.97  E-value=0.0043  Score=50.65  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|+|.|+.|+||||+++.+....
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            489999999999999999998754

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.97  E-value=0.0077  Score=54.42  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..+.++|+.|+|||+||+.+....
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999998766

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.96  E-value=0.0048  Score=48.57  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..|+|+|++|+|||||++.+.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999998753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.96  E-value=0.013  Score=52.55  Aligned_cols=27  Identities=30%  Similarity=0.489  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..+|+|+|++|+|||||.+.+.+....
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~  100 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTE  100 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            569999999999999999999986643

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.95  E-value=0.0044  Score=51.72  Aligned_cols=24  Identities=29%  Similarity=0.268  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|.|.|+.|+||||+++.+....
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            489999999999999999998654

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.95  E-value=0.013  Score=56.12  Aligned_cols=26  Identities=27%  Similarity=0.463  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      +++.|.|++|+||||++..+......
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~  230 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAES  230 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            38999999999999999999877654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.92  E-value=0.0047  Score=55.13  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=24.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ++..+|+|+|++|+|||||+..+......
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~   82 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR   82 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            45569999999999999999999877653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.91  E-value=0.0071  Score=52.98  Aligned_cols=27  Identities=33%  Similarity=0.569  Sum_probs=22.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+.  +++|+|++|+|||||++.+.+...
T Consensus       168 ~ge--iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          168 KGK--ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SSS--EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             cCC--eEEEECCCCCcHHHHHHHhccccc
Confidence            355  899999999999999999986543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.90  E-value=0.0035  Score=54.98  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|+|+|++|+|||||++.++..
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4599999999999999998754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.88  E-value=0.0052  Score=53.28  Aligned_cols=24  Identities=21%  Similarity=0.613  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQ  199 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~  199 (333)
                      +...+|+|+|+.|+||||+++.+.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999997

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.87  E-value=0.0058  Score=50.39  Aligned_cols=24  Identities=33%  Similarity=0.448  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +|.|+||+|+||+|.++.+.....
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            688999999999999999987653

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.80  E-value=0.0062  Score=50.75  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|.|.|+.|+||||+++.+....
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998765

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.79  E-value=0.0036  Score=54.58  Aligned_cols=26  Identities=23%  Similarity=0.452  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..+|+|.|+.|+||||+++.+.....
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45899999999999999999987654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.79  E-value=0.013  Score=55.12  Aligned_cols=47  Identities=11%  Similarity=-0.023  Sum_probs=37.1

Q ss_pred             ccccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +..+.+.++.+.+.....  ..+..+|.++|+.|+||||+++.+.....
T Consensus       372 P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          372 PEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             CccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            456677777777777662  23456899999999999999999998875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.78  E-value=0.006  Score=54.15  Aligned_cols=25  Identities=36%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+|+|.|+.|+|||||++.+.....
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4899999999999999999987653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.77  E-value=0.0049  Score=49.45  Aligned_cols=22  Identities=41%  Similarity=0.616  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|+|+|++|+|||||++.+.+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998763

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.75  E-value=0.021  Score=47.64  Aligned_cols=29  Identities=28%  Similarity=0.250  Sum_probs=25.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .....|.|.|+.|+||||+++.+......
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34568999999999999999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.74  E-value=0.0053  Score=49.21  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..|+|+|++|+|||||++.+.+.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.74  E-value=0.0067  Score=50.12  Aligned_cols=23  Identities=26%  Similarity=0.140  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|.|.|+.|+||||+++.+....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.73  E-value=0.0077  Score=50.63  Aligned_cols=25  Identities=36%  Similarity=0.377  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..+|+|+|++|+||||+++.+....
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4589999999999999999988654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.72  E-value=0.0065  Score=49.91  Aligned_cols=24  Identities=33%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ++..|+|+||+||||++..++--.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            489999999999999999886544

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.71  E-value=0.006  Score=55.01  Aligned_cols=50  Identities=6%  Similarity=0.039  Sum_probs=33.1

Q ss_pred             cCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          256 KQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       256 ~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .++-+++||++.+..+.      ..+.......|..||++||+.+.... ++..+.|
T Consensus       302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~-~d~~~~l  357 (365)
T 3qf7_A          302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEA-FDRKLRI  357 (365)
T ss_dssp             TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTT-CSCEEEE
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEEEEE
Confidence            68889999999876442      22222233447889999999998544 4555444

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.71  E-value=0.023  Score=47.79  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV  215 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~  215 (333)
                      .+|.|.|+.|+||||+++.+...... .++.......
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r   63 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTR   63 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence            48999999999999999999988764 3454333333

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.70  E-value=0.018  Score=51.66  Aligned_cols=38  Identities=18%  Similarity=0.385  Sum_probs=28.4

Q ss_pred             HHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          166 MKDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       166 ~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ...+...+.  .++..+|+|+|.+|+|||||+..+.....
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            334444443  35667999999999999999999887654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.69  E-value=0.0032  Score=51.62  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ...|+|+|++|+|||||++.+.+..
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3489999999999999999887543

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.69  E-value=0.026  Score=46.69  Aligned_cols=51  Identities=16%  Similarity=0.132  Sum_probs=33.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      .|.+.|+.|+||||+++.+....... .+....+..-+........++.++.
T Consensus         5 ~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~   55 (213)
T 4tmk_A            5 YIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL   55 (213)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence            79999999999999999999887653 3423333333333233445555554

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.68  E-value=0.0063  Score=54.27  Aligned_cols=57  Identities=14%  Similarity=0.152  Sum_probs=36.0

Q ss_pred             HHHHHHccCceEEEEeCCCCchhh------hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          249 LLCKRIEKQRVLVILDDLWVQIEL------DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       249 ~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .+...+..++-+++||++.+..|.      ..+.......|..||++||+..+.. ++++.+.+
T Consensus       264 ~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~-~~d~~~~l  326 (339)
T 3qkt_A          264 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD-AADHVIRI  326 (339)
T ss_dssp             HHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG-GCSEEEEE
T ss_pred             HHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hCCEEEEE
Confidence            345566678889999999877542      2221222234668999999977654 44555444

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.68  E-value=0.056  Score=49.97  Aligned_cols=50  Identities=18%  Similarity=0.298  Sum_probs=33.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCC
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQ  218 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~  218 (333)
                      .++.+..-+..+.  ++.|.|++|+|||||+..+......++  ..+.|++...
T Consensus       186 ~LD~~lgGl~~G~--liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm  235 (444)
T 3bgw_A          186 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM  235 (444)
T ss_dssp             HHHHHHSSBCSSC--EEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             HHHhhcCCCCCCc--EEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC
Confidence            4444443344556  899999999999999999887765431  2455655443

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.67  E-value=0.007  Score=50.15  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|.|.|+.|+||||+++.+....
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998765

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=95.61  E-value=0.007  Score=54.36  Aligned_cols=22  Identities=36%  Similarity=0.628  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      ++.+|+|+||+|||||+..++.
T Consensus        27 g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            3899999999999999999986

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.61  E-value=0.036  Score=59.99  Aligned_cols=82  Identities=17%  Similarity=0.164  Sum_probs=52.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC--C---CCCCCHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIK--E---LPDNDELVRASLLCKR  253 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~--~---~~~~~~~~~~~~l~~~  253 (333)
                      .++.|+||.|+|||+||..+.......+  ....|+.+....+...     +..++.+  .   ....+.++....+.+.
T Consensus      1428 ~~vll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A         1428 RIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Confidence            3899999999999999999877654221  2456777666655443     4555632  0   1122334444444444


Q ss_pred             Hc-cCceEEEEeCCC
Q 046889          254 IE-KQRVLVILDDLW  267 (333)
Q Consensus       254 l~-~k~~LlVlDdv~  267 (333)
                      .. .+..+||+|++.
T Consensus      1501 vr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1501 ARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             HHHTCCSEEEESCGG
T ss_pred             HhcCCCCEEEEcChh
Confidence            43 467899999884

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.59  E-value=0.0089  Score=46.33  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..|.++|..|+|||||++.+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999998765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.58  E-value=0.0085  Score=52.83  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|+||.|+|||||++.+....
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            489999999999999999998764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.57  E-value=0.0034  Score=55.05  Aligned_cols=23  Identities=26%  Similarity=0.562  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +++|+|++|+|||||++.+....
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            89999999999999999997654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.51  E-value=0.013  Score=54.01  Aligned_cols=46  Identities=20%  Similarity=0.353  Sum_probs=34.2

Q ss_pred             cccchHHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          158 NFKSRESTMKDIMEAMKD--------------EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .++|.+..++.+...+..              ...+-+.++||.|+||||+|+.+.....
T Consensus        16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence            467877777777655522              1234688999999999999999988764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.50  E-value=0.0065  Score=48.23  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..|+|+|.+|+|||||++.+.+.
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.50  E-value=0.036  Score=45.79  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..|.|.|+.|+||||+++.+......
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999988764

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=95.49  E-value=0.18  Score=44.68  Aligned_cols=130  Identities=9%  Similarity=0.002  Sum_probs=73.0

Q ss_pred             HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Q 046889          172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLC  251 (333)
Q Consensus       172 ~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~  251 (333)
                      .+..+-.+++.++|+.|.||++.++.+....... .|.....+.+....++..+...+                    -.
T Consensus        12 ~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~--------------------~~   70 (343)
T 1jr3_D           12 QLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLC--------------------QA   70 (343)
T ss_dssp             HHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHH--------------------HH
T ss_pred             HHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHh--------------------cC
Confidence            3333445689999999999999999998776432 34332222333333333322211                    01


Q ss_pred             HHHccCceEEEEeCCCC-c--hhhhhcc--CCCCCCCcEEEEeeCC-------hHHHhhcccc--eEecCCCCHHHHHHH
Q 046889          252 KRIEKQRVLVILDDLWV-Q--IELDRVG--IPYGNDGCKFLLTSRS-------RAACNQMQAH--IVDVRTLTEEESWRS  317 (333)
Q Consensus       252 ~~l~~k~~LlVlDdv~~-~--~~~~~l~--~~~~~~g~~vivTTr~-------~~v~~~~~~~--~~~l~~L~~~e~~~l  317 (333)
                      .-+.+++-++|+|++.. .  ..++.+.  +..+..++.+|++|..       ..+...+...  .+...++++++....
T Consensus        71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~  150 (343)
T 1jr3_D           71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW  150 (343)
T ss_dssp             HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred             cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence            12345677899999865 2  3333331  2223346777766643       2343333333  388888888887766


Q ss_pred             HHhhc
Q 046889          318 AEGKR  322 (333)
Q Consensus       318 f~~~a  322 (333)
                      +.+.+
T Consensus       151 l~~~~  155 (343)
T 1jr3_D          151 VAARA  155 (343)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66553

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.45  E-value=0.0092  Score=52.00  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .+|.|.|++|+||||+++.+...
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999998863

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.45  E-value=0.0011  Score=55.52  Aligned_cols=26  Identities=19%  Similarity=0.334  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      +++|+||+|+|||||++.++....+.
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~~~   54 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIPD   54 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcccccC
Confidence            56899999999999999999877543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.44  E-value=0.01  Score=49.80  Aligned_cols=25  Identities=24%  Similarity=0.207  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..|.|.|+.|+||||+++.+.....
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999987753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.44  E-value=0.0054  Score=56.25  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -|+|+|++|+|||||++.+++..
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36999999999999999998654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.44  E-value=0.0097  Score=52.12  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|+||.|+|||||+..+....
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhC
Confidence            489999999999999999998654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.44  E-value=0.0088  Score=46.42  Aligned_cols=23  Identities=26%  Similarity=0.589  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|.++|.+|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48899999999999999998653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.40  E-value=0.0094  Score=46.51  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      --|.|+|..|+|||||++.+.+.
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            36889999999999999998865

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.39  E-value=0.037  Score=46.34  Aligned_cols=33  Identities=33%  Similarity=0.502  Sum_probs=24.1

Q ss_pred             HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..+...+..++  .+.++|+.|+||||++....-.
T Consensus        67 ~~~i~~i~~g~--~~~i~g~TGsGKTt~~~~~~~~   99 (235)
T 3llm_A           67 SEILEAISQNS--VVIIRGATGCGKTTQVPQFILD   99 (235)
T ss_dssp             HHHHHHHHHCS--EEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC--EEEEEeCCCCCcHHhHHHHHhc
Confidence            34444555666  8999999999999877766543

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.38  E-value=0.011  Score=51.63  Aligned_cols=25  Identities=32%  Similarity=0.327  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..+|.|+||.|+|||||+..+....
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4589999999999999999998664

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.37  E-value=0.011  Score=58.45  Aligned_cols=91  Identities=15%  Similarity=0.172  Sum_probs=53.2

Q ss_pred             cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHH
Q 046889          158 NFKSRESTMKDIMEAMKD-------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITK  224 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~  224 (333)
                      .+.|-++..+.|...+.-             ...+-+.++||.|+|||.||+.+.+....  .     ++.++    ..+
T Consensus       478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~--~-----f~~v~----~~~  546 (806)
T 3cf2_A          478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--N-----FISIK----GPE  546 (806)
T ss_dssp             TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC--E-----EEECC----HHH
T ss_pred             HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC--c-----eEEec----cch
Confidence            345667777666655421             12345889999999999999999987642  1     22222    122


Q ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCC
Q 046889          225 IQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWV  268 (333)
Q Consensus       225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~  268 (333)
                      ++    .     .+...+...+...+...-...+++|++|++.+
T Consensus       547 l~----s-----~~vGese~~vr~lF~~Ar~~~P~IifiDEiDs  581 (806)
T 3cf2_A          547 LL----T-----MWFGESEANVREIFDKARQAAPCVLFFDELDS  581 (806)
T ss_dssp             HH----T-----TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred             hh----c-----cccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence            21    1     12223333333333344455789999998863

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.34  E-value=0.0088  Score=52.37  Aligned_cols=24  Identities=38%  Similarity=0.660  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ...|+|+|++|+|||||++.+.+.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            458999999999999999999865

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.33  E-value=0.047  Score=58.24  Aligned_cols=82  Identities=17%  Similarity=0.156  Sum_probs=53.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKRI  254 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l  254 (333)
                      ++.|.|++|+|||||+..+........  ..+.|++........     .+..++...     ....+..+....+.+..
T Consensus       734 lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~lv  806 (1706)
T 3cmw_A          734 IVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALA  806 (1706)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHHHH
Confidence            899999999999999999987765322  246676666555432     255666420     12335556655565544


Q ss_pred             c-cCceEEEEeCCCC
Q 046889          255 E-KQRVLVILDDLWV  268 (333)
Q Consensus       255 ~-~k~~LlVlDdv~~  268 (333)
                      . .+.-++|+|.+..
T Consensus       807 ~~~~~~lVVIDsLq~  821 (1706)
T 3cmw_A          807 RSGAVDVIVVDSVAA  821 (1706)
T ss_dssp             HHTCCSEEEESCSTT
T ss_pred             HccCCCEEEEechhh
Confidence            3 4667999998753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.01  Score=47.80  Aligned_cols=25  Identities=28%  Similarity=0.308  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ....|+|+|+.|+|||||+..+.+.
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3447899999999999999998765

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=95.32  E-value=0.016  Score=51.07  Aligned_cols=29  Identities=24%  Similarity=0.492  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ++.+||+|.|-||+||||.+-.+.--...
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~   74 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI   74 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence            45689999999999999998887766654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.31  E-value=0.011  Score=47.00  Aligned_cols=25  Identities=40%  Similarity=0.417  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      .+...|+|+|+.|+|||||+..+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4556789999999999999988763

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.31  E-value=0.012  Score=48.11  Aligned_cols=36  Identities=17%  Similarity=0.210  Sum_probs=21.0

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .+++.......+.-.|+|+|..|+|||||+..+.+.
T Consensus        18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             ------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            333433333444457899999999999999888764

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.30  E-value=0.076  Score=49.89  Aligned_cols=52  Identities=15%  Similarity=0.290  Sum_probs=34.1

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHH
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEI  229 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  229 (333)
                      +..+.  ++.|.|++|+|||||+..+......... ..+.|++...  +...+...+
T Consensus       239 l~~G~--l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E~--s~~~l~~r~  290 (503)
T 1q57_A          239 ARGGE--VIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDL  290 (503)
T ss_dssp             CCTTC--EEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESSS--CHHHHHHHH
T ss_pred             cCCCe--EEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEeccC--CHHHHHHHH
Confidence            34455  8999999999999999998877643211 2455665543  344554444

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.26  E-value=0.014  Score=46.53  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .....|+|+|++|+|||||++.+.+.
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            34457899999999999999988754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.23  E-value=0.024  Score=45.26  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=25.0

Q ss_pred             HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          168 DIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       168 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .+.. +...+...|+|+|..|+|||||++.+.+.
T Consensus         7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A            7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            3444 33455567899999999999999998853

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.22  E-value=0.012  Score=45.85  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .-|+++|..|+|||||++.+.+..
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            358899999999999999988653

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.21  E-value=0.0098  Score=54.84  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .+++|+|+||+|||||+..++.-
T Consensus        27 ~~~~i~G~nG~GKstll~ai~~~   49 (430)
T 1w1w_A           27 NFTSIIGPNGSGKSNMMDAISFV   49 (430)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            38999999999999999999854

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.19  E-value=0.0082  Score=53.08  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      +.+|+|+||+|||||+..++-
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHH
Confidence            899999999999999999983

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.18  E-value=0.012  Score=45.70  Aligned_cols=23  Identities=26%  Similarity=0.538  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|+|+|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999887653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.17  E-value=0.013  Score=45.54  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -|+++|..|+|||||++.+.+..
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999987653

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=95.16  E-value=0.067  Score=49.82  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=53.1

Q ss_pred             EEEEEcCCCCcHHHH-HHHHHHHHHhh----cCCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHH-H
Q 046889          180 IIGICGRGGIGKTTL-VKEIQKQAKEK----KMFD-EVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDEL-V  245 (333)
Q Consensus       180 vi~I~G~~G~GKTtL-a~~v~~~~~~~----~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~-~  245 (333)
                      .++|+|..|+|||+| +..+.+.....    ++-+ .++++-+.+..+ ..++.+.+...=.+.      ...+.+.. .
T Consensus       164 R~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r  243 (510)
T 2ck3_A          164 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQ  243 (510)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHH
T ss_pred             EEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHH
Confidence            799999999999999 56777766521    1233 466777877654 344555544321111      11222222 1


Q ss_pred             -----HHHHHHHHHc--cCceEEEEeCCCC
Q 046889          246 -----RASLLCKRIE--KQRVLVILDDLWV  268 (333)
Q Consensus       246 -----~~~~l~~~l~--~k~~LlVlDdv~~  268 (333)
                           ....+.+++.  ++..|+++||+..
T Consensus       244 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr  273 (510)
T 2ck3_A          244 YLAPYSGCSMGEYFRDNGKHALIIYDDLSK  273 (510)
T ss_dssp             HHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence                 1334666665  4889999999853

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.16  E-value=0.013  Score=45.71  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|+|+|..|+|||||++.+.+.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999998864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.15  E-value=0.012  Score=45.94  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -.|+|+|..|+|||||++.+.+..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            368999999999999999988653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.15  E-value=0.013  Score=45.81  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -|+++|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999988654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.13  E-value=0.013  Score=47.07  Aligned_cols=23  Identities=26%  Similarity=0.589  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|+++|.+|+|||||+..+.+..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            68899999999999999998653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.13  E-value=0.013  Score=45.82  Aligned_cols=23  Identities=17%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -|+|+|+.|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58899999999999999988654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.12  E-value=0.012  Score=46.30  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      --|+|+|..|+|||||++.+.+.
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            46899999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.12  E-value=0.0088  Score=54.92  Aligned_cols=27  Identities=26%  Similarity=0.366  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ....+|.|+|++|+||||+++.+....
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            445699999999999999999987654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.12  E-value=0.013  Score=46.41  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ....|+|+|+.|+|||||++.+.+..
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence            34578999999999999999887653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.08  E-value=0.018  Score=47.14  Aligned_cols=40  Identities=15%  Similarity=0.248  Sum_probs=27.9

Q ss_pred             HHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          164 STMKDIMEAMKD-EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       164 ~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..+..+..++.. .....+.|+||+|+||||+|..+.+...
T Consensus        43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            344555555532 1123689999999999999999988763

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.07  E-value=0.014  Score=46.12  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .-|+|+|..|+|||||++.+.+.
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.06  E-value=0.013  Score=46.92  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      --|+|+|.+|+|||||++.+.+.
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999887754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.06  E-value=0.039  Score=46.08  Aligned_cols=26  Identities=31%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..|.|.|+.|+||||+++.+......
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            38999999999999999999988764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.06  E-value=0.013  Score=45.70  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      --|+|+|+.|+|||||++.+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35899999999999999998754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.06  E-value=0.014  Score=51.68  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|+||.|+|||||+..+....
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            489999999999999999998654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.05  E-value=0.019  Score=48.72  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..++.+.|.+|+|||||+..+.....
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            46889999999999999999987765

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.04  E-value=0.014  Score=46.93  Aligned_cols=24  Identities=38%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      --|.|+|..|+|||||++.+.+..
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            368999999999999998776543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.03  E-value=0.012  Score=46.13  Aligned_cols=22  Identities=36%  Similarity=0.697  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|+++|..|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.03  E-value=0.013  Score=47.16  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..|+++|.+|+|||||++.+.+.
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998864

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=95.03  E-value=0.095  Score=48.72  Aligned_cols=84  Identities=19%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHHHHhhcCCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHH-H----
Q 046889          180 IIGICGRGGIGKTTLV-KEIQKQAKEKKMFD-EVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDEL-V----  245 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~-~----  245 (333)
                      .++|+|..|+|||+|+ ..+.+..    .-+ .++++-+.+..+ ..++.+.+...=.+.      ...+.+.. .    
T Consensus       164 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~  239 (502)
T 2qe7_A          164 RELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAP  239 (502)
T ss_dssp             BCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHH
Confidence            7999999999999994 5666654    234 346777777654 344555554422221      11222222 1    


Q ss_pred             -HHHHHHHHHc--cCceEEEEeCCC
Q 046889          246 -RASLLCKRIE--KQRVLVILDDLW  267 (333)
Q Consensus       246 -~~~~l~~~l~--~k~~LlVlDdv~  267 (333)
                       ....+.+++.  ++..|+++||+.
T Consensus       240 ~~a~tiAEyfrd~G~dVLl~~Dslt  264 (502)
T 2qe7_A          240 YAGCAMGEYFMYKGKHALVVYDDLS  264 (502)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred             HHHHHHHHHHHHcCCcEEEEEecHH
Confidence             1234666665  488999999885

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.01  E-value=0.014  Score=46.17  Aligned_cols=24  Identities=25%  Similarity=0.535  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ...|+|+|..|+|||||++.+.+.
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            347899999999999999998876

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.01  E-value=0.0064  Score=58.70  Aligned_cols=26  Identities=19%  Similarity=0.387  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ++.++|+|++|+|||||++.+.+...
T Consensus        45 lp~iaIvG~nGsGKSTLL~~I~Gl~~   70 (608)
T 3szr_A           45 LPAIAVIGDQSSGKSSVLEALSGVAL   70 (608)
T ss_dssp             CCCEECCCCTTSCHHHHHHHHHSCC-
T ss_pred             CCeEEEECCCCChHHHHHHHHhCCCC
Confidence            45799999999999999999987653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.00  E-value=0.014  Score=46.64  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .-|+|+|..|+|||||++.+.+.
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46889999999999999998865

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.99  E-value=0.039  Score=52.42  Aligned_cols=48  Identities=15%  Similarity=0.172  Sum_probs=36.5

Q ss_pred             ccccchHHHHHHHHHHh--hcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          157 YNFKSRESTMKDIMEAM--KDEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l--~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      +.++.|.++.+.+....  ......+|.++|+.|+||||+++.+......
T Consensus       349 p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~  398 (546)
T 2gks_A          349 PEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA  398 (546)
T ss_dssp             CTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence            45666777777777766  2234568999999999999999999877653

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.99  E-value=0.018  Score=48.48  Aligned_cols=24  Identities=33%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|+|.|+.|+||||+++.+....
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHc
Confidence            579999999999999999998775

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.97  E-value=0.017  Score=47.45  Aligned_cols=26  Identities=27%  Similarity=0.311  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ....|.|+|+.|+|||||+..+.+..
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34578999999999999999988654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.97  E-value=0.015  Score=45.33  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      --|+|+|..|+|||||++.+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999998864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=94.96  E-value=0.013  Score=45.68  Aligned_cols=21  Identities=24%  Similarity=0.428  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      -|+|+|..|+|||||++.+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            578999999999999998864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.96  E-value=0.014  Score=45.57  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      -|+|+|+.|+|||||++.+.+
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999998863

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.96  E-value=0.017  Score=52.41  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+|+|.||.|+|||||+..+.....
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            4899999999999999999987653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.93  E-value=0.013  Score=47.10  Aligned_cols=25  Identities=20%  Similarity=0.581  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      +...|+|+|..|+|||||++.+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457999999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.93  E-value=0.015  Score=45.87  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ...|+|+|..|+|||||++.+.+.
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999998754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.92  E-value=0.016  Score=45.36  Aligned_cols=23  Identities=39%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..|+|+|..|+|||||++.+.+.
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.92  E-value=0.016  Score=47.26  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..|.|+|+.|+|||||+..+...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999988754

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.87  E-value=0.049  Score=50.61  Aligned_cols=43  Identities=30%  Similarity=0.429  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      ....+..+...+..++ +.+.|.|++|+||||++..+.......
T Consensus        30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~   72 (459)
T 3upu_A           30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST   72 (459)
T ss_dssp             HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            4556666666665544 389999999999999999998877543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.87  E-value=0.023  Score=46.15  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      ...|+++|++|+|||||++.+.+
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999998864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.86  E-value=0.016  Score=46.12  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -|+|+|..|+|||||++.+.+..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58899999999999999998654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.86  E-value=0.018  Score=46.61  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      --|+|+|.+|+|||||++.+.+.
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999988753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.86  E-value=0.017  Score=45.55  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ...|.|+|..|+|||||++.+.+..
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3468999999999999999998654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.86  E-value=0.017  Score=46.51  Aligned_cols=24  Identities=25%  Similarity=0.517  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      --|+|+|..|+|||||++.+.+..
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999988653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.85  E-value=0.017  Score=46.24  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .-|+|+|..|+|||||++.+.+.
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998864

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=94.84  E-value=0.068  Score=43.51  Aligned_cols=50  Identities=16%  Similarity=0.148  Sum_probs=32.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      .|+|=|..|+||||.++.+....+..+ .. ..+..-+........++.++.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~   51 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILL   51 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhh
Confidence            578889999999999999998887543 22 333333333333444445443

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=94.84  E-value=0.13  Score=47.73  Aligned_cols=85  Identities=19%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHHHHhhcCCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHHH-----
Q 046889          180 IIGICGRGGIGKTTLV-KEIQKQAKEKKMFD-EVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDELV-----  245 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~-----  245 (333)
                      .++|+|..|+|||+|+ ..+.+..    +-+ .++++-+.+..+ ..++.+.+...=.+.      ...+.+...     
T Consensus       164 R~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~  239 (513)
T 3oaa_A          164 RELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAP  239 (513)
T ss_dssp             BCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHH
T ss_pred             EEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHH
Confidence            7999999999999995 5666542    233 356788887654 344555544321111      112222221     


Q ss_pred             -HHHHHHHHHc--cCceEEEEeCCCC
Q 046889          246 -RASLLCKRIE--KQRVLVILDDLWV  268 (333)
Q Consensus       246 -~~~~l~~~l~--~k~~LlVlDdv~~  268 (333)
                       ....+.+++.  ++..||++||+..
T Consensus       240 ~~a~tiAEyfrd~G~dVLli~Dsltr  265 (513)
T 3oaa_A          240 YAGCAMGEYFRDRGEDALIIYDDLSK  265 (513)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEecChHH
Confidence             1234555554  5889999999853

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.84  E-value=0.081  Score=57.29  Aligned_cols=95  Identities=15%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             HHHHHHHH--HhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC----
Q 046889          164 STMKDIME--AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE----  237 (333)
Q Consensus       164 ~~~~~l~~--~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~----  237 (333)
                      ..++.+..  -+..+.  ++.|.|++|+|||||+..+........  ..++|++.....+..     .++.++...    
T Consensus       369 ~~LD~lLG~GGl~~G~--lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~-----~a~~lGvd~~~L~  439 (2050)
T 3cmu_A          369 LSLDIALGAGGLPMGR--IVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLL  439 (2050)
T ss_dssp             HHHHHHHSSSSEETTS--EEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHH-----HHHHTTCCTTTCE
T ss_pred             HHHHHHhccCCccCCc--EEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHH-----HHHHcCCCHHHeE
Confidence            34444442  233445  999999999999999999987765322  356777776666543     256666531    


Q ss_pred             -CCCCCHHHHHHHHHHHHc-cCceEEEEeCCC
Q 046889          238 -LPDNDELVRASLLCKRIE-KQRVLVILDDLW  267 (333)
Q Consensus       238 -~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~  267 (333)
                       ....+.++....+..... .+.-++|+|.+.
T Consensus       440 I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~  471 (2050)
T 3cmu_A          440 CSQPDTGEQALEICDALARSGAVDVIVVDSVA  471 (2050)
T ss_dssp             EECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred             EeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence             123345555555554443 466799999764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.83  E-value=0.013  Score=49.13  Aligned_cols=26  Identities=23%  Similarity=0.288  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ....|+|+|.+|+|||||++.+.+..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCC
Confidence            44579999999999999999998653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.81  E-value=0.015  Score=45.92  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      --|+|+|..|+|||||++.+.+.
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            46889999999999999998754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.81  E-value=0.017  Score=45.52  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .|+|+|..|+|||||++.+.+.
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6889999999999999998854

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.78  E-value=0.017  Score=45.95  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|.|+|..|+|||||++.+.+..
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999988653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=94.77  E-value=0.033  Score=51.42  Aligned_cols=43  Identities=21%  Similarity=0.458  Sum_probs=31.7

Q ss_pred             cchHHHHHHHHHHhhc-----------CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          160 KSRESTMKDIMEAMKD-----------EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~-----------~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|-++.++.+...+..           .....++|+|++|+|||||++.+.+..
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence            3456677777666642           123579999999999999999998764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.77  E-value=0.018  Score=45.74  Aligned_cols=24  Identities=25%  Similarity=0.530  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .-.|.|+|..|+|||||++.+.+.
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999998865

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.75  E-value=0.018  Score=46.20  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      --|+|+|..|+|||||++.+.+..
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhCC
Confidence            468999999999999999887653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.74  E-value=0.019  Score=45.66  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|+|+|..|+|||||++.+.+..
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Confidence            468999999999999999988653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.74  E-value=0.014  Score=46.75  Aligned_cols=24  Identities=21%  Similarity=0.542  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|+|+|..|+|||||++.+.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            478999999999999999987653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.71  E-value=0.017  Score=46.16  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .|+|+|..|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5789999999999999998754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.71  E-value=0.018  Score=52.32  Aligned_cols=22  Identities=36%  Similarity=0.617  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .++|+|++|+|||||.+.+.+.
T Consensus        22 ~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           22 KTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            8999999999999999999873

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.71  E-value=0.019  Score=45.58  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|+++|..|+|||||++.+.+.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999988764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.71  E-value=0.019  Score=45.41  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .-|.|+|..|+|||||++.+.+..
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            368999999999999999988653

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=94.71  E-value=0.034  Score=51.13  Aligned_cols=89  Identities=19%  Similarity=0.205  Sum_probs=53.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhc-CCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHHH-----
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKK-MFD-EVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDELV-----  245 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~-----  245 (333)
                      .++|+|..|+|||+|+..+.+.....+ +-+ .++++-+.+..+ ..++.+.+...=.+.      ...+.+...     
T Consensus       153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~  232 (465)
T 3vr4_D          153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP  232 (465)
T ss_dssp             BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred             EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence            689999999999999998887654311 111 456666776543 344555544321010      112222221     


Q ss_pred             -HHHHHHHHHc---cCceEEEEeCCCC
Q 046889          246 -RASLLCKRIE---KQRVLVILDDLWV  268 (333)
Q Consensus       246 -~~~~l~~~l~---~k~~LlVlDdv~~  268 (333)
                       ....+.+++.   +++.||++||+..
T Consensus       233 ~~a~tiAEyfrd~~G~~VLl~~DslTr  259 (465)
T 3vr4_D          233 RMALTAAEYLAYEKGMHVLVIMTDMTN  259 (465)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence             2345777776   4788999999863

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.70  E-value=0.019  Score=46.56  Aligned_cols=25  Identities=24%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ...|+|+|..|+|||||++.+.+..
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCC
Confidence            3468999999999999999987653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.70  E-value=0.019  Score=45.32  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -.|+|+|..|+|||||++.+.+..
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            468999999999999999987653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.70  E-value=0.02  Score=46.05  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      --|+|+|..|+|||||++.+.+..
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            368999999999999999988754

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.70  E-value=0.036  Score=52.96  Aligned_cols=28  Identities=18%  Similarity=0.203  Sum_probs=24.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ...+|.|.|+.|+||||+++.+......
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~  422 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQ  422 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence            3468999999999999999999887653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.66  E-value=0.019  Score=46.19  Aligned_cols=24  Identities=21%  Similarity=0.405  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -.|+|+|..|+|||||++.+.+..
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999998763

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.66  E-value=0.017  Score=49.54  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|+|+|++|+|||||.+.+.+..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999997653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.66  E-value=0.025  Score=45.64  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ...-|+|+|..|+|||||++.+.+.
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3446899999999999999998865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.65  E-value=0.02  Score=45.31  Aligned_cols=23  Identities=26%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      --|+|+|..|+|||||++.+.+.
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36889999999999999988754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=94.64  E-value=0.018  Score=45.49  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..-|+|+|..|+|||||++.+.+.
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.64  E-value=0.015  Score=46.03  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      --|+++|.+|+|||||++.+.+.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999998864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.63  E-value=0.02  Score=46.51  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ...|+|+|..|+|||||++.+.+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4468999999999999999987653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.61  E-value=0.02  Score=45.36  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ...|+|+|..|+|||||++.+.+..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~   30 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQ   30 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC
Confidence            3468999999999999999988543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.60  E-value=0.02  Score=46.70  Aligned_cols=24  Identities=33%  Similarity=0.559  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ...|+|+|..|+|||||++.+.+.
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999988765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.59  E-value=0.02  Score=46.05  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      --|+|+|..|+|||||++.+.+..
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998653

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=94.59  E-value=0.051  Score=50.57  Aligned_cols=88  Identities=19%  Similarity=0.200  Sum_probs=52.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHH-HHHHHHHHhhcCCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHH-
Q 046889          175 DEKVSIIGICGRGGIGKTTLV-KEIQKQAKEKKMFD-EVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDEL-  244 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~-  244 (333)
                      .|+  .++|+|+.|+|||+|+ ..+.+..    .-+ .++++-+.+..+ ..++.+.+...=.+.      ...+.+.. 
T Consensus       174 rGQ--R~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~  247 (515)
T 2r9v_A          174 RGQ--RELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASL  247 (515)
T ss_dssp             TTC--BEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHH
T ss_pred             cCC--EEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHH
Confidence            355  7999999999999994 5666654    234 346777777654 344555554321111      11222221 


Q ss_pred             H-----HHHHHHHHHcc--CceEEEEeCCCC
Q 046889          245 V-----RASLLCKRIEK--QRVLVILDDLWV  268 (333)
Q Consensus       245 ~-----~~~~l~~~l~~--k~~LlVlDdv~~  268 (333)
                      .     ....+.+++.+  +..|+++||+..
T Consensus       248 r~~a~~~a~tiAEyfrd~G~dVLli~DslTr  278 (515)
T 2r9v_A          248 QYIAPYAGCAMGEYFAYSGRDALVVYDDLSK  278 (515)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence            1     23346666654  889999999853

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.57  E-value=0.015  Score=47.07  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQ  199 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~  199 (333)
                      ...|+|+|.+|+|||||++.+.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            3478999999999999999885

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.56  E-value=0.022  Score=45.66  Aligned_cols=24  Identities=17%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      --|+|+|..|+|||||++.+.+..
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999988653

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.53  E-value=0.032  Score=44.93  Aligned_cols=24  Identities=29%  Similarity=0.148  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ++.++|+.|+||||++..+.....
T Consensus         5 i~vi~G~~gsGKTT~ll~~~~~~~   28 (184)
T 2orw_A            5 LTVITGPMYSGKTTELLSFVEIYK   28 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            788999999999999866665543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.52  E-value=0.021  Score=46.29  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +...|+|+|..|+|||||++.+.+..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            34478999999999999999988654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.51  E-value=0.023  Score=45.69  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||++.+.+.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6889999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.51  E-value=0.022  Score=45.94  Aligned_cols=23  Identities=35%  Similarity=0.585  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .-|+|+|..|+|||||++.+.+.
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            46899999999999999998864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.51  E-value=0.023  Score=45.58  Aligned_cols=24  Identities=29%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|+|+|..|+|||||++.+.+..
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHcCC
Confidence            368999999999999999998653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.49  E-value=0.022  Score=46.61  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..-|+|+|..|+|||||++.+.+.
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999865

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.49  E-value=0.021  Score=47.14  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|+|+|+.|+||||+++.+....
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            379999999999999999887653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.48  E-value=0.023  Score=45.72  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      --|+|+|..|+|||||++.+.+..
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999988653

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=94.46  E-value=0.032  Score=52.44  Aligned_cols=87  Identities=15%  Similarity=0.101  Sum_probs=53.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH-HHHHHHHHH----HhCC---------CCCCC
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI-TKIQDEIAG----WLGI---------KELPD  240 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~----~l~~---------~~~~~  240 (333)
                      .|+  .++|+|+.|+|||+|+..+.+.    .+-+.++++-+.+..+. .++++.+-+    ..+.         ....+
T Consensus       226 kGq--r~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd  299 (588)
T 3mfy_A          226 KGG--TAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSN  299 (588)
T ss_dssp             TTC--EEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTT
T ss_pred             cCC--eEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCC
Confidence            355  8999999999999999988654    23456778888877654 334433211    0110         01122


Q ss_pred             CCHHH------HHHHHHHHHc--cCceEEEEeCCC
Q 046889          241 NDELV------RASLLCKRIE--KQRVLVILDDLW  267 (333)
Q Consensus       241 ~~~~~------~~~~l~~~l~--~k~~LlVlDdv~  267 (333)
                      .+...      ....+.+++.  ++..||++|++.
T Consensus       300 ~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~Dslt  334 (588)
T 3mfy_A          300 MPVAAREASIYTGITIAEYFRDMGYDVALMADSTS  334 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchH
Confidence            22221      1234555554  488999999986

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.46  E-value=0.024  Score=45.57  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|+|+|+.|+|||||++.+.+..
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999988653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.45  E-value=0.023  Score=46.49  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|+|+|..|+|||||+..+.+..
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999988654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.42  E-value=0.024  Score=45.37  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ...|+|+|..|+|||||++.+.+.
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999998764

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=94.40  E-value=0.17  Score=49.04  Aligned_cols=62  Identities=21%  Similarity=0.334  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhhcCCceEEEEEcCCCCcHHH-HHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          163 ESTMKDIMEAMKDEKVSIIGICGRGGIGKTT-LVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       163 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTt-La~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      +...+.+...|...+  +..|.||+|+|||+ ++..|......    ...+.++...+..+..+++.+.
T Consensus       192 ~~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~  254 (646)
T 4b3f_X          192 TSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLA  254 (646)
T ss_dssp             HHHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHH
Confidence            455566666665555  78899999999996 45555544442    2356666666555555555543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.40  E-value=0.028  Score=44.79  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+...|+|+|..|+|||||++.+.+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            344578999999999999999987654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.39  E-value=0.024  Score=46.14  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .-|+|+|..|+|||||++.+.+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999987653

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=94.38  E-value=0.015  Score=55.97  Aligned_cols=45  Identities=18%  Similarity=0.137  Sum_probs=31.6

Q ss_pred             cccchHHHHHHHHHHhhcCCce-----------EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          158 NFKSRESTMKDIMEAMKDEKVS-----------IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~~~~~-----------vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .++|.+.....+...+..+..+           -+.++|+.|+|||+||+.+....
T Consensus       296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~  351 (595)
T 3f9v_A          296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA  351 (595)
T ss_dssp             TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred             hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence            3466666666665555444211           48899999999999999987654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.37  E-value=0.025  Score=45.77  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ...-|+|+|..|+|||||++.+.+.
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3457899999999999999998754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.34  E-value=0.019  Score=46.42  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .-|.|+|.+|+|||||++.+.+.
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999977653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.34  E-value=0.021  Score=46.27  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      --|+|+|..|+|||||++.+.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.33  E-value=0.026  Score=45.20  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|+|+|..|+|||||++.+.+..
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            368999999999999999998653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.28  E-value=0.023  Score=49.89  Aligned_cols=26  Identities=31%  Similarity=0.571  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      +..+.|+|+|..|+|||||++.+.+.
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            34568999999999999999998865

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.28  E-value=0.021  Score=46.04  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      .+...|+|+|..|+|||||++.+.+
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            3445799999999999999998864

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=94.22  E-value=0.036  Score=51.18  Aligned_cols=88  Identities=19%  Similarity=0.196  Sum_probs=53.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcC--CCeEEEEEeCCCCC-HHHHHHHHHHHhCCC------CCCCCCHH------
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKM--FDEVAMAVVSQTPS-ITKIQDEIAGWLGIK------ELPDNDEL------  244 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~------  244 (333)
                      .++|+|..|+|||+|+..+.......+.  =+.++++-+.+..+ ..++.+.+...=.+.      ...+.+..      
T Consensus       154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~  233 (469)
T 2c61_A          154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP  233 (469)
T ss_dssp             BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence            7889999999999999999877643211  12456666776543 345555554431111      11222222      


Q ss_pred             HHHHHHHHHHc---cCceEEEEeCCC
Q 046889          245 VRASLLCKRIE---KQRVLVILDDLW  267 (333)
Q Consensus       245 ~~~~~l~~~l~---~k~~LlVlDdv~  267 (333)
                      .....+.+++.   ++..||++||+.
T Consensus       234 ~~a~tiAEyfrdd~G~dVLl~~Dslt  259 (469)
T 2c61_A          234 RMALTAAEYLAYEHGMHVLVILTDIT  259 (469)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence            12345667766   489999999874

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=94.20  E-value=0.027  Score=50.74  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      ++..|+|++|+|||||...++-
T Consensus        26 gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999874

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.18  E-value=0.028  Score=45.87  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..|+|+|..|+|||||++.+.+.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            36899999999999999998864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.17  E-value=0.029  Score=45.73  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..|+|+|..|+|||||+..+.+.
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998854

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.15  E-value=0.029  Score=44.59  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -+.|.|++|+||||||..+...
T Consensus        18 gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc
Confidence            6889999999999999988763

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.15  E-value=0.018  Score=49.19  Aligned_cols=26  Identities=27%  Similarity=0.428  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +...|+|.|+.|+||||+++.+....
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            44689999999999999999887654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.14  E-value=0.028  Score=46.37  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      .-|+|+|.+|+|||||+..+.+
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998863

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.12  E-value=0.028  Score=45.64  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .--|+|+|..|+|||||++.+.+.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999998744

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.11  E-value=0.03  Score=45.01  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .-|+|+|..|+|||||++.+.+.
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999865

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.05  E-value=0.03  Score=45.26  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      --|+|+|..|+|||||++.+.+.
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46889999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	333
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-17
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	8e-04

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 78.7 bits (193), Expect = 2e-17
 Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 21/172 (12%)

Query: 162 RESTMKDIMEAMK---DEKVSIIGICGRGGIGKTTLVKEI--QKQAKEKKMFDEVAMAVV 216
           RE  +  +++ +    D     + + GR G GK+ +  +   +        +D +     
Sbjct: 25  REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKD 84

Query: 217 SQTPSITKIQDEIAGWLGIKELPDN----------DELVRASLLCKRIEKQRVLVILDDL 266
           S T   +         L +K   D             +++  +    I++   L + DD+
Sbjct: 85  SGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV 144

Query: 267 WVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQA--HIVDVRTLTEEESWR 316
             +               + L+T+R     N        ++V +L  +E + 
Sbjct: 145 VQE----ETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYD 192

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 23/152 (15%), Positives = 45/152 (29%)

Query: 172 AMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG 231
           A+K     ++GI G    GKTTL  ++ +  +E+ +   V            +       
Sbjct: 16  AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEE 75

Query: 232 WLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSR 291
           W     L  + E +   L  +     ++ +   D        R      +D         
Sbjct: 76  WFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFL 135

Query: 292 SRAACNQMQAHIVDVRTLTEEESWRSAEGKRR 323
            R         +V +    E    R  +  ++
Sbjct: 136 QRKEWRPFFDFVVYLDCPREIRFARENDQVKQ 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.95
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.15
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.13
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.12
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.08
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.07
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.05
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.04
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.03
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.03
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.02
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.97
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.96
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.93
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.88
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.87
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.84
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.8
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.75
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.74
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.73
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.72
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.71
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.7
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.7
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.61
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.61
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.56
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.53
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.46
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.44
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.43
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.42
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.41
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.36
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.24
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.23
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.18
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.17
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.11
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.08
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.01
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.81
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.8
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.77
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.63
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.63
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.6
d1okkd2	207	GTPase domain of the signal recognition particle r	97.58
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.58
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.57
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.57
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.46
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.44
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.42
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.41
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.36
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.35
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.3
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.3
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.3
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.26
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.26
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.21
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.16
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.14
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.13
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.13
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.09
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.07
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.07
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.97
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.95
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.95
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.93
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.92
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.92
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.91
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.89
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.87
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.86
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.85
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.84
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.83
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.8
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.79
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.73
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.72
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.72
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.71
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.71
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.7
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.64
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.62
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.6
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.6
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.58
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.57
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.57
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.55
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.55
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.48
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.48
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.47
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.46
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.46
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.43
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.31
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.3
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.3
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.29
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.29
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.26
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.26
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.23
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.22
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.09
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.06
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.05
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.03
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.0
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.0
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.96
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.94
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.91
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.86
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.79
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.76
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.74
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.7
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.67
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.65
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.63
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.58
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.57
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.56
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.52
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.5
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.5
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.49
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	95.45
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.43
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.43
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.43
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.39
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.39
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.33
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.32
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.32
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.31
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.31
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.28
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.26
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.24
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.21
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.19
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.16
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.15
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.14
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.14
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.12
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.12
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	95.11
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.11
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.1
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.09
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.08
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.07
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.04
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.04
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.04
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.02
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.02
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.01
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.0
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.0
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.0
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.93
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.92
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.89
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.89
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.87
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.87
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.85
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.84
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.83
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.83
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.77
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.73
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.72
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.7
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.7
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.68
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.68
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.64
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.63
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.59
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.55
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.54
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.54
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.54
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.46
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.46
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.44
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.42
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.37
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.34
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.34
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.32
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.27
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.24
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.19
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.16
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.12
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.11
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.04
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.86
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.8
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.75
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.69
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.63
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.57
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.56
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.54
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.5
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.48
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.41
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.32
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.1
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.3
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	92.21
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.12
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	91.93
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.69
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.19
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	91.1
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.75
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	89.86
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.61
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.41
d1tuea_	205	Replication protein E1 helicase domain {Human papi	88.72
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	88.49
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	88.44
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.39
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	87.26
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.96
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	86.55
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	86.08
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	86.08
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	85.75
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	84.64
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	84.28
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	83.84
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.09
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	83.07
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	82.78
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	82.78
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.53
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.41
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	81.16
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	81.03
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	80.89
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	80.02

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=1.1e-27  Score=208.63  Aligned_cols=166  Identities=14%  Similarity=0.166  Sum_probs=131.0

Q ss_pred             ccccchHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHHH--hhcCCCeEEEEEeCCCCCHHHHHHHH--
Q 046889          157 YNFKSRESTMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQAK--EKKMFDEVAMAVVSQTPSITKIQDEI--  229 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~--~~~~f~~~~wv~v~~~~~~~~~~~~i--  229 (333)
                      ..+|||+.+++.|...|..   .+..+|+|+||||+||||||+.+|+...  .+.+|++++|+++++.++...+...+  
T Consensus        20 ~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~   99 (277)
T d2a5yb3          20 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI   99 (277)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred             CceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHH
Confidence            4578999999999999853   4578999999999999999999998754  56789999999999988866665544  


Q ss_pred             -HHHhCCCCC-------CCCCHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHHHhhccc
Q 046889          230 -AGWLGIKEL-------PDNDELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAACNQMQA  301 (333)
Q Consensus       230 -~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v~~~~~~  301 (333)
                       +..++....       ...........+.+.+.++++|+||||+|+..++..+.    ..||+||||||+..++..+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~----~~~srilvTTR~~~v~~~~~~  175 (277)
T d2a5yb3         100 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ----ELRLRCLVTTRDVEISNAASQ  175 (277)
T ss_dssp             HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH----HTTCEEEEEESBGGGGGGCCS
T ss_pred             HHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhc----ccCceEEEEeehHHHHHhcCC
Confidence             333332211       11123334556788889999999999999998887653    248999999999999887665


Q ss_pred             c--eEecCCCCHHHHHHHHHhhcccCC
Q 046889          302 H--IVDVRTLTEEESWRSAEGKRRVCL  326 (333)
Q Consensus       302 ~--~~~l~~L~~~e~~~lf~~~a~~~~  326 (333)
                      .  .|++++|+.+|+|+||++++|...
T Consensus       176 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~  202 (277)
T d2a5yb3         176 TCEFIEVTSLEIDECYDFLEAYGMPMP  202 (277)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHTSCCCC
T ss_pred             CCceEECCCCCHHHHHHHHHHHhCCcc
Confidence            4  399999999999999999998654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.15  E-value=2.4e-11  Score=100.90  Aligned_cols=140  Identities=18%  Similarity=0.272  Sum_probs=91.3

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------------CCC--eEEEEEeCCCCC-----
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------------MFD--EVAMAVVSQTPS-----  221 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------------~f~--~~~wv~v~~~~~-----  221 (333)
                      ++++...+.+++  +++|+||+|+|||||++.+++..++..                 ...  ..-+-.+.|++.     
T Consensus        19 l~~vsl~i~~Ge--~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~l   96 (240)
T d1g2912          19 VREMSLEVKDGE--FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM   96 (240)
T ss_dssp             EEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS
T ss_pred             EcceeeEEcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchh
Confidence            334444455677  999999999999999999997754321                 000  112334455431     


Q ss_pred             -------------------HHHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889          222 -------------------ITKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE-----  271 (333)
Q Consensus       222 -------------------~~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----  271 (333)
                                         .......+++.+++.+....     + -+.++..|.+.|..++-+|++|++.+..|     
T Consensus        97 tV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~  176 (240)
T d1g2912          97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV  176 (240)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHH
T ss_pred             hhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHH
Confidence                               12234566777776533222     2 34567789999999999999999987644     


Q ss_pred             -hhhccCCCC-CCCcEEEEeeCChHHHhhcccceEecC
Q 046889          272 -LDRVGIPYG-NDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       272 -~~~l~~~~~-~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                       +..+...+. ..|..||++||+.+.+..++++.+.|.
T Consensus       177 ~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~  214 (240)
T d1g2912         177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN  214 (240)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence             222222222 238899999999999988888774443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.7e-11  Score=101.26  Aligned_cols=138  Identities=17%  Similarity=0.219  Sum_probs=81.3

Q ss_pred             HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCC--eEEEEEeCCCC-------------
Q 046889          167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFD--EVAMAVVSQTP-------------  220 (333)
Q Consensus       167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~--~~~wv~v~~~~-------------  220 (333)
                      +++...+.+++  +++|+||+|+|||||++.+.+..++.+           ...  .+-.-.+.|.+             
T Consensus        17 ~~isl~i~~Ge--i~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~   94 (232)
T d2awna2          17 KDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMS   94 (232)
T ss_dssp             EEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC-----------
T ss_pred             eeeEEEEcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHH
Confidence            33343445667  999999999999999999987654321           000  00011222222             


Q ss_pred             -----------CHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccC
Q 046889          221 -----------SITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGI  277 (333)
Q Consensus       221 -----------~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~  277 (333)
                                 .......++++.+++.+.....      -+.++..|.+.|..++-+|++|++.+..|      +..+..
T Consensus        95 ~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~  174 (232)
T d2awna2          95 FGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS  174 (232)
T ss_dssp             ----------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence                       1123456677777775333222      23345568899999999999999987744      222222


Q ss_pred             CC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          278 PY-GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       278 ~~-~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      .. ...|..||++||+.+.+..++++.+.|
T Consensus       175 ~l~~~~g~tii~vTHd~~~a~~~~dri~vm  204 (232)
T d2awna2         175 RLHKRLGRTMIYVTHDQVEAMTLADKIVVL  204 (232)
T ss_dssp             HHHHHSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            22 344889999999999999888887444

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=2.3e-11  Score=100.88  Aligned_cols=141  Identities=16%  Similarity=0.204  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC----------eEEEEEeCCCCC----------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD----------EVAMAVVSQTPS----------  221 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~----------~~~wv~v~~~~~----------  221 (333)
                      .++++...+..++  +++|+||+|+|||||++.+.+..++...   |+          .+-.-.+.|.+.          
T Consensus        21 al~~vsl~v~~Ge--~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en   98 (239)
T d1v43a3          21 AVNKLNLTIKDGE--FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYEN   98 (239)
T ss_dssp             EEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHH
T ss_pred             EEcceeEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHH
Confidence            3344444455677  9999999999999999999977654220   00          001122333321          


Q ss_pred             --------------HHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHHccCceEEEEeCCCCchh------hhhc
Q 046889          222 --------------ITKIQDEIAGWLGIKELPDN------DELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRV  275 (333)
Q Consensus       222 --------------~~~~~~~i~~~l~~~~~~~~------~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l  275 (333)
                                    .......+++.+++.+....      .-+.++..|.+.|..++-+|+||++.+..|      +..+
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~l  178 (239)
T d1v43a3          99 IAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE  178 (239)
T ss_dssp             HHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHH
Confidence                          12344567777777532222      234567789999999999999999987644      2222


Q ss_pred             cCCC-CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          276 GIPY-GNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       276 ~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .... ...|..||++||+...+..++++.+.|.
T Consensus       179 l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~  211 (239)
T d1v43a3         179 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN  211 (239)
T ss_dssp             HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence            2222 2338899999999999999888874443

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.08  E-value=4.3e-11  Score=98.85  Aligned_cols=135  Identities=14%  Similarity=0.191  Sum_probs=84.0

Q ss_pred             HHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe--------EEEEEeCCCCC---------
Q 046889          170 MEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE--------VAMAVVSQTPS---------  221 (333)
Q Consensus       170 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~--------~~wv~v~~~~~---------  221 (333)
                      ...+..|+  +++|+|++|+|||||++.+.+..++.+           .+..        .-.-.+.|.+.         
T Consensus        25 sl~i~~Ge--~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e  102 (230)
T d1l2ta_          25 NLNIKEGE--FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALE  102 (230)
T ss_dssp             EEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHH
T ss_pred             EEEEcCCC--EEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHH
Confidence            33344677  999999999999999999987654321           0000        00223334331         


Q ss_pred             ---------------HH---HHHHHHHHHhCCCC-CCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh-----
Q 046889          222 ---------------IT---KIQDEIAGWLGIKE-LPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE-----  271 (333)
Q Consensus       222 ---------------~~---~~~~~i~~~l~~~~-~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----  271 (333)
                                     ..   +...++++.+++.+ ...     .+ -+.++..|.+.|..++-+|++|++.+..|     
T Consensus       103 ni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~  182 (230)
T d1l2ta_         103 NVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGE  182 (230)
T ss_dssp             HHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred             HHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHH
Confidence                           11   12234555556532 111     12 34567789999999999999999987744     


Q ss_pred             -hhhccCCC-CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          272 -LDRVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       272 -~~~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                       +..+.... ...|..||++||+.+++. ++++.+.|.
T Consensus       183 ~i~~~l~~l~~~~g~tii~vTHd~~~a~-~~drv~~m~  219 (230)
T d1l2ta_         183 KIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLK  219 (230)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECSCHHHHT-TSSEEEEEE
T ss_pred             HHHHHHHHHHHhhCCEEEEECCCHHHHH-hCCEEEEEE
Confidence             22222222 345889999999999884 777775543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.3e-10  Score=96.41  Aligned_cols=136  Identities=13%  Similarity=0.223  Sum_probs=88.8

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------Ce-------EEEEEeCCCCC---------
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------DE-------VAMAVVSQTPS---------  221 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~~-------~~wv~v~~~~~---------  221 (333)
                      +...+..++  +++|+|++|+|||||++.+.+..++...   |        ..       .-...+.|+++         
T Consensus        24 vsl~i~~Ge--~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~e  101 (240)
T d3dhwc1          24 VSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG  101 (240)
T ss_dssp             EEEEECSSC--EEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHH
T ss_pred             eeEEEcCCC--EEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHH
Confidence            333445667  9999999999999999999876544210   0        00       00223333331         


Q ss_pred             ---------------HHHHHHHHHHHhCCCCCCC-----CC-HHHHHHHHHHHHccCceEEEEeCCCCchh------hhh
Q 046889          222 ---------------ITKIQDEIAGWLGIKELPD-----ND-ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDR  274 (333)
Q Consensus       222 ---------------~~~~~~~i~~~l~~~~~~~-----~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~  274 (333)
                                     ..+...++++.+++.+...     .+ -+.+.-.|.+.|..++-+|++|++.+..|      +..
T Consensus       102 ni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~  181 (240)
T d3dhwc1         102 NVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE  181 (240)
T ss_dssp             HHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHH
Confidence                           1244567777777753322     22 35566789999999999999999987644      222


Q ss_pred             ccCCCCC-CCcEEEEeeCChHHHhhcccceEec
Q 046889          275 VGIPYGN-DGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       275 l~~~~~~-~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      +...... .|..||++||+...+..++++.+.|
T Consensus       182 ~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl  214 (240)
T d3dhwc1         182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVI  214 (240)
T ss_dssp             HHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            2222222 3889999999999999888877444

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.05  E-value=4.9e-10  Score=92.17  Aligned_cols=137  Identities=18%  Similarity=0.145  Sum_probs=89.1

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C--------Ce--EEEEEeCCCCC--------------
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F--------DE--VAMAVVSQTPS--------------  221 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f--------~~--~~wv~v~~~~~--------------  221 (333)
                      +...+..++  +++|+||+|+|||||++.+.+...+.+.   |        ..  .-.-.+.|.+.              
T Consensus        19 vs~~i~~Ge--~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~   96 (229)
T d3d31a2          19 LSLKVESGE--YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFG   96 (229)
T ss_dssp             EEEEECTTC--EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHH
T ss_pred             eEEEECCCC--EEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHH
Confidence            333345667  9999999999999999999977644210   0        00  01223333331              


Q ss_pred             -------HHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchh------hhhccCCC-CC
Q 046889          222 -------ITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIE------LDRVGIPY-GN  281 (333)
Q Consensus       222 -------~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~-~~  281 (333)
                             ......++++.+++.......      -+.++-.+.+.|..++-+|+||++.+..|      +..+.... ..
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~  176 (229)
T d3d31a2          97 MRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK  176 (229)
T ss_dssp             HHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhc
Confidence                   122345667777765333222      34566789999999999999999987744      22222222 23


Q ss_pred             CCcEEEEeeCChHHHhhcccceEecC
Q 046889          282 DGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       282 ~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                      .|..||++||+...+..++++.+.|.
T Consensus       177 ~g~tii~vtHd~~~~~~~~drv~vm~  202 (229)
T d3d31a2         177 NKLTVLHITHDQTEARIMADRIAVVM  202 (229)
T ss_dssp             TTCEEEEEESCHHHHHHHCSEEEEES
T ss_pred             CCcEEEEEcCCHHHHHHhCCEEEEEE
Confidence            48889999999999988888875443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=4.8e-12  Score=105.64  Aligned_cols=143  Identities=18%  Similarity=0.299  Sum_probs=91.3

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---C------C-----eEEEEEeCCCCC----
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---F------D-----EVAMAVVSQTPS----  221 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f------~-----~~~wv~v~~~~~----  221 (333)
                      ||....++.+...+.+++  +++|+||||+|||||++.+.+..++...   +      .     ......+++...    
T Consensus        12 yg~~~vl~~vs~~v~~Ge--i~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~   89 (238)
T d1vpla_          12 IGKKEILKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN   89 (238)
T ss_dssp             ETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTT
T ss_pred             ECCEEEEccceeEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCC
Confidence            444444555555556677  9999999999999999999977654310   0      0     001123344321    


Q ss_pred             --------------------HHHHHHHHHHHhCCCCC-----CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh----
Q 046889          222 --------------------ITKIQDEIAGWLGIKEL-----PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE----  271 (333)
Q Consensus       222 --------------------~~~~~~~i~~~l~~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----  271 (333)
                                          .....+.+++.+++...     ...+ -+.+.-.+...|..++-+++||++.+..|    
T Consensus        90 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~  169 (238)
T d1vpla_          90 MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA  169 (238)
T ss_dssp             SBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred             ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHH
Confidence                                12234455566665421     1222 34556678999999999999999987644    


Q ss_pred             --hhhccCCCCCCCcEEEEeeCChHHHhhcccceE
Q 046889          272 --LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       272 --~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                        +..+.......|..||+|||+.+.+..++++.+
T Consensus       170 ~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~  204 (238)
T d1vpla_         170 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIA  204 (238)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEE
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence              222222233448889999999999998888773

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.03  E-value=8.3e-11  Score=97.35  Aligned_cols=124  Identities=18%  Similarity=0.160  Sum_probs=83.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEE----------------EEeCCCCC----------------------
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAM----------------AVVSQTPS----------------------  221 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w----------------v~v~~~~~----------------------  221 (333)
                      +++|+||+|+|||||++.+.+..++..   ..++                ..++|.+.                      
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~p~~---G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~  102 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVE  102 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHH
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCCc---eEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHH
Confidence            889999999999999999998765421   1111                12233221                      


Q ss_pred             HHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHccCceEEEEeCCCCchhh------hhccCCC-CCCCcEEEE
Q 046889          222 ITKIQDEIAGWLGIKELPDND------ELVRASLLCKRIEKQRVLVILDDLWVQIEL------DRVGIPY-GNDGCKFLL  288 (333)
Q Consensus       222 ~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~~-~~~g~~viv  288 (333)
                      ..+...++++.+++.+.....      -+.++-.+.+.|..++-+|+||++.+..|.      ..+.... ...|..||+
T Consensus       103 ~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~  182 (240)
T d2onka1         103 RDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH  182 (240)
T ss_dssp             HHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            123456778888876443332      345567799999999999999999876442      2221222 223778999


Q ss_pred             eeCChHHHhhcccceEec
Q 046889          289 TSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       289 TTr~~~v~~~~~~~~~~l  306 (333)
                      +||+...+..++++.+.|
T Consensus       183 vtHd~~~~~~~adri~vm  200 (240)
T d2onka1         183 VTHDLIEAAMLADEVAVM  200 (240)
T ss_dssp             EESCHHHHHHHCSEEEEE
T ss_pred             EeCCHHHHHHhCCEEEEE
Confidence            999999988888877433

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.03  E-value=8.8e-11  Score=97.42  Aligned_cols=138  Identities=21%  Similarity=0.292  Sum_probs=89.1

Q ss_pred             HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CC---------------eEEEEEeCCCCC-------
Q 046889          167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FD---------------EVAMAVVSQTPS-------  221 (333)
Q Consensus       167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~---------------~~~wv~v~~~~~-------  221 (333)
                      +++...+..++  +++|+|++|+|||||++.+.+...+...   |+               .+-.-.+.|.+.       
T Consensus        22 ~~vsl~i~~Ge--~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv   99 (242)
T d1oxxk2          22 DNVNINIENGE--RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA   99 (242)
T ss_dssp             EEEEEEECTTC--EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred             eceEEEECCCC--EEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccH
Confidence            33444445667  9999999999999999999976543210   00               001123334331       


Q ss_pred             -----------------HHHHHHHHHHHhCCCCCCCC-----C-HHHHHHHHHHHHccCceEEEEeCCCCchh------h
Q 046889          222 -----------------ITKIQDEIAGWLGIKELPDN-----D-ELVRASLLCKRIEKQRVLVILDDLWVQIE------L  272 (333)
Q Consensus       222 -----------------~~~~~~~i~~~l~~~~~~~~-----~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~  272 (333)
                                       ......++++.+++......     + -+.++-.+.+.|..++-+|++|++.+..|      +
T Consensus       100 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i  179 (242)
T d1oxxk2         100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA  179 (242)
T ss_dssp             HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred             HHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHH
Confidence                             12345667777777532222     2 34556789999999999999999986644      2


Q ss_pred             hhccCCC-CCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 DRVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..+...+ ...|..||++||+...+..++++.+.|
T Consensus       180 ~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm  214 (242)
T d1oxxk2         180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVL  214 (242)
T ss_dssp             HHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEE
Confidence            2222222 223888999999999988888877444

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.02  E-value=1.5e-11  Score=103.72  Aligned_cols=144  Identities=13%  Similarity=0.237  Sum_probs=89.7

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe-------------------------EE
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE-------------------------VA  212 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-------------------------~~  212 (333)
                      |....++++...+..++  +++|+|++|+|||||++.+.+-.++..   .|+.                         .-
T Consensus        13 g~~~al~~vs~~i~~GE--i~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~   90 (258)
T d1b0ua_          13 GGHEVLKGVSLQARAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR   90 (258)
T ss_dssp             TTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred             CCEEEEcceeeEEcCCC--EEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcc
Confidence            44344445555556677  999999999999999999987654321   0100                         00


Q ss_pred             EEEeCCCCC------H-------------------HHHHHHHHHHhCCCC----C--CCCC-HHHHHHHHHHHHccCceE
Q 046889          213 MAVVSQTPS------I-------------------TKIQDEIAGWLGIKE----L--PDND-ELVRASLLCKRIEKQRVL  260 (333)
Q Consensus       213 wv~v~~~~~------~-------------------~~~~~~i~~~l~~~~----~--~~~~-~~~~~~~l~~~l~~k~~L  260 (333)
                      +-.+.|.++      +                   ......+++.+++.+    .  ...+ -+.+.-.+.+.|..++-+
T Consensus        91 ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~l  170 (258)
T d1b0ua_          91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDV  170 (258)
T ss_dssp             EEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred             eEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCE
Confidence            222333321      1                   122344555566531    1  1122 345566788999999999


Q ss_pred             EEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          261 VILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       261 lVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      |++|++.+..|      +..+.......|..||++||+.+.+..++++.+.|
T Consensus       171 lilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm  222 (258)
T d1b0ua_         171 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL  222 (258)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred             EEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEE
Confidence            99999987644      22222223334778999999999999888887444

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.97  E-value=2.4e-11  Score=102.53  Aligned_cols=145  Identities=14%  Similarity=0.211  Sum_probs=91.3

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc---CCCe-------------EEEEEeCCCCCH-
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK---MFDE-------------VAMAVVSQTPSI-  222 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-------------~~wv~v~~~~~~-  222 (333)
                      ||....++++...+..++  +++|+||||+|||||++.+.+..++..   .|+.             .-..+++|.+.. 
T Consensus        14 yg~~~aL~~vs~~v~~Ge--i~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~   91 (254)
T d1g6ha_          14 FGEFKALDGVSISVNKGD--VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL   91 (254)
T ss_dssp             ETTEEEEEEECCEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred             ECCeEEEcceEEEECCCC--EEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccC
Confidence            344444555555566777  999999999999999999997765432   0000             013344444321 


Q ss_pred             ------H------------------------------HHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHccCceE
Q 046889          223 ------T------------------------------KIQDEIAGWLGIKELP-----DND-ELVRASLLCKRIEKQRVL  260 (333)
Q Consensus       223 ------~------------------------------~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~l~~k~~L  260 (333)
                            +                              .....+++.++.....     ..+ -+.+.-.+.+.|..++-+
T Consensus        92 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~l  171 (254)
T d1g6ha_          92 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM  171 (254)
T ss_dssp             GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred             CCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCc
Confidence                  0                              1122345555543221     122 344566788899999999


Q ss_pred             EEEeCCCCchh------hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          261 VILDDLWVQIE------LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       261 lVlDdv~~~~~------~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      |+||++.+..|      +..+.......|..||++||+.+.+..++++.+.|
T Consensus       172 lilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm  223 (254)
T d1g6ha_         172 IVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM  223 (254)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEE
Confidence            99999987644      22222233445899999999999988888877433

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.96  E-value=2.1e-11  Score=101.85  Aligned_cols=145  Identities=16%  Similarity=0.173  Sum_probs=87.5

Q ss_pred             cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCe-------------EEEEEeCCCCC--
Q 046889          160 KSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDE-------------VAMAVVSQTPS--  221 (333)
Q Consensus       160 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~-------------~~wv~v~~~~~--  221 (333)
                      ||....++++...+..++  +++|+||||+|||||++.+.+..++...   |+.             .-..++++...  
T Consensus        16 yg~~~al~~vs~~i~~Ge--i~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~   93 (240)
T d1ji0a_          16 YGAIHAIKGIDLKVPRGQ--IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF   93 (240)
T ss_dssp             ETTEEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCC
T ss_pred             ECCEEEEeeeeEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccC
Confidence            444444555555566777  9999999999999999999977654220   000             00223333221  


Q ss_pred             ---------------------HHHHHHHHHHHh-CCC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchh--
Q 046889          222 ---------------------ITKIQDEIAGWL-GIK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIE--  271 (333)
Q Consensus       222 ---------------------~~~~~~~i~~~l-~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--  271 (333)
                                           .......++..+ ++.     .....+ -+.+.-.+.+.|..++-+|+||++.+..|  
T Consensus        94 ~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~  173 (240)
T d1ji0a_          94 PELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPI  173 (240)
T ss_dssp             TTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHH
T ss_pred             CcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHH
Confidence                                 111122222222 111     112223 44556678899999999999999987644  


Q ss_pred             ----hhhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          272 ----LDRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       272 ----~~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                          +..+.......|..||++||+.+.+..++++.+-|
T Consensus       174 ~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl  212 (240)
T d1ji0a_         174 LVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVL  212 (240)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence                22222233344888999999999888888877433

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.93  E-value=3.7e-08  Score=83.15  Aligned_cols=165  Identities=17%  Similarity=0.190  Sum_probs=108.4

Q ss_pred             ccccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMKD------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      ..++||+.+++.|..+|.+      ...+.+.|+||.|+||||+++.+.........+ ..+++..............+.
T Consensus        16 ~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~   94 (276)
T d1fnna2          16 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA-RFVYINGFIYRNFTAIIGEIA   94 (276)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC-EEEEEETTTCCSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCC-cEEEecchhhhhhhhhhhhhH
Confidence            3578999999999888853      234689999999999999999999988643322 344666666667778888888


Q ss_pred             HHhCCCC-CCCCCHHHHHHHHHHHHcc--CceEEEEeCCCCchh-----hhhccC---CCCCCCcEEEEeeCChHHH---
Q 046889          231 GWLGIKE-LPDNDELVRASLLCKRIEK--QRVLVILDDLWVQIE-----LDRVGI---PYGNDGCKFLLTSRSRAAC---  296 (333)
Q Consensus       231 ~~l~~~~-~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~-----~~~l~~---~~~~~g~~vivTTr~~~v~---  296 (333)
                      ..++... ............+.+.+..  ...++++|++.....     ...+..   ........+|.++......   
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  174 (276)
T d1fnna2          95 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL  174 (276)
T ss_dssp             HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred             HhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhhhhhc
Confidence            8877642 2333455555555555544  556777887765421     111211   1122244566666665432   


Q ss_pred             -----hhcccceEecCCCCHHHHHHHHHhhc
Q 046889          297 -----NQMQAHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       297 -----~~~~~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                           ..+....+.+.+.+.++.++++.+++
T Consensus       175 ~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~  205 (276)
T d1fnna2         175 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRA  205 (276)
T ss_dssp             CHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred             chhhhhhhcchhccccchhHHHHHHHHHHHH
Confidence                 22333448899999999999998764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=6.3e-08  Score=81.41  Aligned_cols=154  Identities=14%  Similarity=0.196  Sum_probs=101.3

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----CCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----MFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      ..+.+||+++++.+...|....-.-+.++|++|+|||+|+..+........    .....+|..-..     .++     
T Consensus        17 ld~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~-----~li-----   86 (268)
T d1r6bx2          17 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG-----SLL-----   86 (268)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred             CCcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeec-----hHh-----
Confidence            456899999999999999765555778999999999999999887765432    123344532111     000     


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHHcc-CceEEEEeCCCCc----------hhhhhccCCCCCC-CcEEEEeeCChHHHhhc
Q 046889          232 WLGIKELPDNDELVRASLLCKRIEK-QRVLVILDDLWVQ----------IELDRVGIPYGND-GCKFLLTSRSRAACNQM  299 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~----------~~~~~l~~~~~~~-g~~vivTTr~~~v~~~~  299 (333)
                         -........++....+...+.. ++.++++||+...          .+...+..|.-.. .-++|.+|...+.....
T Consensus        87 ---ag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~  163 (268)
T d1r6bx2          87 ---AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIF  163 (268)
T ss_dssp             ---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCC
T ss_pred             ---ccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHH
Confidence               0011233455555555555544 6689999997643          2345555565444 45888888888775443


Q ss_pred             cc------c--eEecCCCCHHHHHHHHHhhc
Q 046889          300 QA------H--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       300 ~~------~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..      .  .+.++..+.+++..++....
T Consensus       164 e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~  194 (268)
T d1r6bx2         164 EKDRALARRFQKIDITEPSIEETVQIINGLK  194 (268)
T ss_dssp             CCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred             hhcHHHHhhhcccccCCCCHHHHHHHHHHhh
Confidence            32      1  18999999999999987643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=3.7e-10  Score=93.72  Aligned_cols=130  Identities=18%  Similarity=0.268  Sum_probs=78.9

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----------CCCe----EEEEEeCCCC------------------
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----------MFDE----VAMAVVSQTP------------------  220 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----------~f~~----~~wv~v~~~~------------------  220 (333)
                      +..|+  +++|+|++|+|||||++.+.+.....+          .+..    ....++++..                  
T Consensus        22 I~~Ge--i~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   99 (231)
T d1l7vc_          22 VRAGE--ILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD   99 (231)
T ss_dssp             EETTC--EEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSC
T ss_pred             EcCCC--EEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccch
Confidence            44677  999999999999999999987432110          0000    0011222211                  


Q ss_pred             -CHHHHHHHHHHHhCCCCCCC-----CCH-HHHHHHHHHHHcc-------CceEEEEeCCCCchh------hhhccCCCC
Q 046889          221 -SITKIQDEIAGWLGIKELPD-----NDE-LVRASLLCKRIEK-------QRVLVILDDLWVQIE------LDRVGIPYG  280 (333)
Q Consensus       221 -~~~~~~~~i~~~l~~~~~~~-----~~~-~~~~~~l~~~l~~-------k~~LlVlDdv~~~~~------~~~l~~~~~  280 (333)
                       ...+...+++..+++.+...     .+. +.+.-.+.+.+-.       .+-+|+||++.+..|      +..+.....
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~  179 (231)
T d1l7vc_         100 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC  179 (231)
T ss_dssp             TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence             12445667777777753322     232 3344456665543       457999999987754      222222233


Q ss_pred             CCCcEEEEeeCChHHHhhcccceE
Q 046889          281 NDGCKFLLTSRSRAACNQMQAHIV  304 (333)
Q Consensus       281 ~~g~~vivTTr~~~v~~~~~~~~~  304 (333)
                      ..|..||++||+.+.+..++++.+
T Consensus       180 ~~g~tii~vtHdl~~~~~~~dri~  203 (231)
T d1l7vc_         180 QQGLAIVMSSHDLNHTLRHAHRAW  203 (231)
T ss_dssp             HTTCEEEECCCCHHHHHHHCSBCC
T ss_pred             hCCCEEEEEeCCHHHHHHHCCEEE
Confidence            458899999999998877777663

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=9e-09  Score=84.98  Aligned_cols=157  Identities=17%  Similarity=0.200  Sum_probs=93.4

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      .|....+++|.++.++.|..++.++..+-+.++||.|+||||+|+.+.........-....-...+.......+...+..
T Consensus        10 rP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~   89 (224)
T d1sxjb2          10 RPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKH   89 (224)
T ss_dssp             CCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHH
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCceehhhHHHH
Confidence            45566789999999999999999887777889999999999999999877653211111222233333332222222111


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh--hhhc--cCCCCCCCcEEEEeeCChHH-Hhhccc--ceE
Q 046889          232 WLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE--LDRV--GIPYGNDGCKFLLTSRSRAA-CNQMQA--HIV  304 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l--~~~~~~~g~~vivTTr~~~v-~~~~~~--~~~  304 (333)
                      ........              ...+..++|+|++.....  ...+  .+......+.++++|.+..- ...+..  ..+
T Consensus        90 ~~~~~~~~--------------~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i  155 (224)
T d1sxjb2          90 FAQKKLHL--------------PPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL  155 (224)
T ss_dssp             HHHBCCCC--------------CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             HHHhhccC--------------CCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHh
Confidence            11110000              013556899998875422  1221  11223336677777766542 222222  238


Q ss_pred             ecCCCCHHHHHHHHHhhc
Q 046889          305 DVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       305 ~l~~L~~~e~~~lf~~~a  322 (333)
                      ++.+++.++-...+.+.+
T Consensus       156 ~~~~~~~~~i~~~l~~i~  173 (224)
T d1sxjb2         156 RYSKLSDEDVLKRLLQII  173 (224)
T ss_dssp             ECCCCCHHHHHHHHHHHH
T ss_pred             hhcccchhhhHHHHHHHH
Confidence            999999999988887655

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.80  E-value=2.5e-08  Score=84.46  Aligned_cols=45  Identities=18%  Similarity=0.253  Sum_probs=37.2

Q ss_pred             ccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          155 GFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       155 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ....|+||+++++.|...    ..+++.|+|++|+|||+|++.+.....
T Consensus        10 ~~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          10 NRKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             SGGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             ChhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            347899999999998763    234889999999999999999887653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.3e-08  Score=85.11  Aligned_cols=139  Identities=17%  Similarity=0.251  Sum_probs=81.3

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe----EEEEEeCCCCC---------
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE----VAMAVVSQTPS---------  221 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~----~~wv~v~~~~~---------  221 (333)
                      ++++...+..++  +++|+|++|+|||||++.+.+..++..           .++.    .....++|.+.         
T Consensus        30 L~~isl~i~~Ge--~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  107 (251)
T d1jj7a_          30 LQGLTFTLRPGE--VTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQEN  107 (251)
T ss_dssp             EEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHH
T ss_pred             EeceEEEEcCCC--EEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhh
Confidence            344444555677  999999999999999999987654321           0110    01123344331         


Q ss_pred             ----------HHHHHH--------HHHHHhCC--C-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh---
Q 046889          222 ----------ITKIQD--------EIAGWLGI--K-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL---  272 (333)
Q Consensus       222 ----------~~~~~~--------~i~~~l~~--~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---  272 (333)
                                ...+..        ..+..+..  .     .....+ -+..+-.|.+.|-.++-+++||++.+..|.   
T Consensus       108 i~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~  187 (251)
T d1jj7a_         108 IAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ  187 (251)
T ss_dssp             HHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhH
Confidence                      111111        12222211  0     011223 455667799999999999999999887542   


Q ss_pred             ---hhccCCC-CCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          273 ---DRVGIPY-GNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       273 ---~~l~~~~-~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                         ..+.... ...|..||++||+...+.. +++.+.|+
T Consensus       188 ~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~-aDrI~vl~  225 (251)
T d1jj7a_         188 LQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLE  225 (251)
T ss_dssp             HHHHHHHHTCGGGGGCEEEEECSCHHHHHT-CSEEEEEE
T ss_pred             HHHHHHHHHHhhhcCCEEEEEeCCHHHHHh-CCEEEEEE
Confidence               2222222 2237789999999988765 56554443

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=3.1e-08  Score=81.78  Aligned_cols=156  Identities=14%  Similarity=0.156  Sum_probs=91.5

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      .|....+++|.++.++.|..++..+..+.+.++||.|+||||+++.+.+............-...+..............
T Consensus         9 rP~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~   88 (227)
T d1sxjc2           9 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKD   88 (227)
T ss_dssp             CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHH
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchhh
Confidence            35566789999999999999998887766889999999999999999987642211111111222222222211111111


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--hhhhc--cCCCCCCCcEEEEeeCChHH-Hhhccc--ceE
Q 046889          232 WLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--ELDRV--GIPYGNDGCKFLLTSRSRAA-CNQMQA--HIV  304 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l--~~~~~~~g~~vivTTr~~~v-~~~~~~--~~~  304 (333)
                      ....               ......+..++|+|++....  ....+  .+......+.++++|.+..- ...+..  ..+
T Consensus        89 ~~~~---------------~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~i  153 (227)
T d1sxjc2          89 FAST---------------RQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF  153 (227)
T ss_dssp             HHHB---------------CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             cccc---------------ccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhhh
Confidence            0000               00112345689999986542  11111  12223346777888776543 222222  238


Q ss_pred             ecCCCCHHHHHHHHHhhc
Q 046889          305 DVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       305 ~l~~L~~~e~~~lf~~~a  322 (333)
                      .+.+++.++-..++.+.+
T Consensus       154 ~~~~~~~~~i~~~l~~I~  171 (227)
T d1sxjc2         154 RFQPLPQEAIERRIANVL  171 (227)
T ss_dssp             ECCCCCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccc
Confidence            999999999888887654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=2.2e-08  Score=83.11  Aligned_cols=167  Identities=10%  Similarity=0.113  Sum_probs=97.2

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-CCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-FDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|....+++|++...+.|..++..+..+.+.++||.|+||||+++.+.+....... .........+...........+-
T Consensus         7 ~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (237)
T d1sxjd2           7 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVK   86 (237)
T ss_dssp             CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHH
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHH
Confidence            35556778999999999999998887777889999999999999999887532221 22223334444444433322222


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch--hhhhc--cCCCCCCCcEEEEeeCChH-HHhhccc--ce
Q 046889          231 GWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI--ELDRV--GIPYGNDGCKFLLTSRSRA-ACNQMQA--HI  303 (333)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l--~~~~~~~g~~vivTTr~~~-v~~~~~~--~~  303 (333)
                      ............     ..+......+.-++|+||+....  ....+  ........+.+|++|.+.. ....+..  ..
T Consensus        87 ~~~~~~~~~~~~-----~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~~  161 (237)
T d1sxjd2          87 NFARLTVSKPSK-----HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK  161 (237)
T ss_dssp             HHHHSCCCCCCT-----THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred             HHhhhhhhhhhH-----HHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchhhh
Confidence            211111001100     11222223345589999987542  22222  1222334566777766543 2222222  23


Q ss_pred             EecCCCCHHHHHHHHHhhcc
Q 046889          304 VDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       304 ~~l~~L~~~e~~~lf~~~a~  323 (333)
                      +++.+++.++..+++.+.+.
T Consensus       162 i~f~~~~~~~~~~~L~~i~~  181 (237)
T d1sxjd2         162 FRFKALDASNAIDRLRFISE  181 (237)
T ss_dssp             EECCCCCHHHHHHHHHHHHH
T ss_pred             hccccccccccchhhhhhhh
Confidence            89999999999999887653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.72  E-value=1.5e-08  Score=83.91  Aligned_cols=155  Identities=14%  Similarity=0.164  Sum_probs=89.2

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCe-EEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDE-VAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|....+++|.+...+.|..++..+..+.+.++||.|+||||+|+.+....... .+.. ..-+..+.......+...+.
T Consensus        19 ~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~-~~~~~~~e~n~s~~~~~~~~~~~~~   97 (231)
T d1iqpa2          19 RPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIREKVK   97 (231)
T ss_dssp             CCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHTTHHHHH
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhc-ccCCCeeEEecCcccchhHHHHHHH
Confidence            345567899999999999999998888789999999999999999998875421 1111 11122221111110011111


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-HHhhcccc--e
Q 046889          231 GWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-ACNQMQAH--I  303 (333)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v~~~~~~~--~  303 (333)
                      .....               ......+..++++||+...  .....+.  +......+.+|++|.... +...+..+  .
T Consensus        98 ~~~~~---------------~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~  162 (231)
T d1iqpa2          98 EFART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI  162 (231)
T ss_dssp             HHHHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred             HHHhh---------------hhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCcccc
Confidence            00000               0011236678999988643  2222221  122233455666665543 32222222  3


Q ss_pred             EecCCCCHHHHHHHHHhhc
Q 046889          304 VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       304 ~~l~~L~~~e~~~lf~~~a  322 (333)
                      +.+.+.+.++....+++.+
T Consensus       163 i~~~~~~~~~~~~~l~~~~  181 (231)
T d1iqpa2         163 FRFRPLRDEDIAKRLRYIA  181 (231)
T ss_dssp             EECCCCCHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHH
Confidence            8899999988888887665

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=6.2e-08  Score=82.29  Aligned_cols=137  Identities=15%  Similarity=0.114  Sum_probs=79.8

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC---CCeEEEEEeCCCCC-----H-----------HHHH
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM---FDEVAMAVVSQTPS-----I-----------TKIQ  226 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f~~~~wv~v~~~~~-----~-----------~~~~  226 (333)
                      ++++...+..|+  +++|+|++|+|||||++.+.+..++...   ++.. ..+++|.+.     +           ....
T Consensus        52 L~~isl~i~~Ge--~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~-i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~  128 (281)
T d1r0wa_          52 LKNINLNIEKGE--MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR-VSFCSQFSWIMPGTIKENIIFGVSYDEYRY  128 (281)
T ss_dssp             EEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC-EEEECSSCCCCSEEHHHHHTTTSCCCHHHH
T ss_pred             EeCeEEEEcCCC--EEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCE-EEEEeccccccCceeeccccccccccchHH
Confidence            333444445567  9999999999999999999987654321   1111 122333321     0           1112


Q ss_pred             HHHHHHhCCC-------C---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh------hccCCCCCCC
Q 046889          227 DEIAGWLGIK-------E---------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD------RVGIPYGNDG  283 (333)
Q Consensus       227 ~~i~~~l~~~-------~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~~~~~g  283 (333)
                      ..+++.....       .         ....+ .+..+-.|.+.|-.++-+++||++.+..|..      .........+
T Consensus       129 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~  208 (281)
T d1r0wa_         129 KSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN  208 (281)
T ss_dssp             HHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTT
T ss_pred             HHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCC
Confidence            2233322210       0         01123 4556677889999999999999998775421      1112223346


Q ss_pred             cEEEEeeCChHHHhhcccceEec
Q 046889          284 CKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       284 ~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ..+|++||+.+.... +++.+.|
T Consensus       209 ~tvi~itH~~~~l~~-aDrI~vl  230 (281)
T d1r0wa_         209 KTRILVTSKMEHLRK-ADKILIL  230 (281)
T ss_dssp             SEEEEECSCHHHHHT-CSEEEEE
T ss_pred             CEEEEEechHHHHHh-CCEEEEE
Confidence            778999999887654 5555433

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=3.8e-08  Score=78.42  Aligned_cols=149  Identities=11%  Similarity=0.162  Sum_probs=90.2

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----CCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----MFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      ..+.+||+++++.+...|...+-.-+.++|++|+|||+++..+........    .....+|..     +...++    .
T Consensus        21 ld~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~l-----d~~~Li----A   91 (195)
T d1jbka_          21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL-----DMGALV----A   91 (195)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE-----CHHHHH----T
T ss_pred             CCCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEe-----eHHHHh----c
Confidence            356789999999999999865555788999999999999999887765432    223445531     222222    0


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHH-cc-CceEEEEeCCCCch---------hhhhccCCCCCC-CcEEEEeeCChHHHhhc
Q 046889          232 WLGIKELPDNDELVRASLLCKRI-EK-QRVLVILDDLWVQI---------ELDRVGIPYGND-GCKFLLTSRSRAACNQM  299 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l-~~-k~~LlVlDdv~~~~---------~~~~l~~~~~~~-g~~vivTTr~~~v~~~~  299 (333)
                        |.  ......++....+.+.+ .. .+.+|++||+....         +...+..|.-.. .-++|.+|...+....+
T Consensus        92 --g~--~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~  167 (195)
T d1jbka_          92 --GA--KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYI  167 (195)
T ss_dssp             --TT--CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHT
T ss_pred             --cC--CccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHH
Confidence              00  00112233333344333 33 47899999986441         222333333222 45788888777654433


Q ss_pred             cc------c--eEecCCCCHHHHHHH
Q 046889          300 QA------H--IVDVRTLTEEESWRS  317 (333)
Q Consensus       300 ~~------~--~~~l~~L~~~e~~~l  317 (333)
                      ..      .  .+.+...+.+++..+
T Consensus       168 e~d~aL~rrF~~I~V~Ep~~e~t~~I  193 (195)
T d1jbka_         168 EKDAALERRFQKVFVAEPSVEDTIAI  193 (195)
T ss_dssp             TTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred             HcCHHHHhcCCEeecCCCCHHHHHHH
Confidence            22      2  288888888887654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.70  E-value=1.2e-08  Score=84.78  Aligned_cols=134  Identities=12%  Similarity=0.115  Sum_probs=78.2

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCeE----EEEEeCCCCC------------
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDEV----AMAVVSQTPS------------  221 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~~----~wv~v~~~~~------------  221 (333)
                      +...+..++  +++|+|++|+|||||++.+.+..++..           .+...    ....++|++.            
T Consensus        21 isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~   98 (242)
T d1mv5a_          21 ISFEAQPNS--IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTY   98 (242)
T ss_dssp             EEEEECTTE--EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTS
T ss_pred             eEEEEcCCC--EEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheec
Confidence            333344566  999999999999999999987664422           01100    0123344321            


Q ss_pred             ------HHHHHHHHHHHhCCCCC----------------CCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------
Q 046889          222 ------ITKIQDEIAGWLGIKEL----------------PDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------  272 (333)
Q Consensus       222 ------~~~~~~~i~~~l~~~~~----------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------  272 (333)
                            ........++..+....                ...+ -+..+-.+.+.|-.++-+|+||++.+..|.      
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i  178 (242)
T d1mv5a_          99 GLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV  178 (242)
T ss_dssp             CTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHH
T ss_pred             ccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHH
Confidence                  11222233333322110                1123 344566788899899999999999876442      


Q ss_pred             hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ........ .|..||++||+...+.. +++.+.|
T Consensus       179 ~~~l~~l~-~~~Tvi~itH~l~~~~~-~D~i~vl  210 (242)
T d1mv5a_         179 QKALDSLM-KGRTTLVIAHRLSTIVD-ADKIYFI  210 (242)
T ss_dssp             HHHHHHHH-TTSEEEEECCSHHHHHH-CSEEEEE
T ss_pred             HHHHHHHc-CCCEEEEEECCHHHHHh-CCEEEEE
Confidence            11111111 37789999999998765 5665444

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=9.8e-08  Score=79.09  Aligned_cols=133  Identities=20%  Similarity=0.263  Sum_probs=77.7

Q ss_pred             HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe----EEEEEeCCCCC------------
Q 046889          169 IMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE----VAMAVVSQTPS------------  221 (333)
Q Consensus       169 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~----~~wv~v~~~~~------------  221 (333)
                      +...+..++  .++|+|++|+|||||++.+.+...+..           .+..    ....+++|++.            
T Consensus        22 isl~i~~Ge--~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~   99 (241)
T d2pmka1          22 INLSIKQGE--VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL   99 (241)
T ss_dssp             EEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCT
T ss_pred             eEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccc
Confidence            333445677  999999999999999999987654322           0110    01234455431            


Q ss_pred             ------HHHHHHHHHHHhCC-------C---------CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhh------
Q 046889          222 ------ITKIQDEIAGWLGI-------K---------ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIEL------  272 (333)
Q Consensus       222 ------~~~~~~~i~~~l~~-------~---------~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------  272 (333)
                            ...+ ...++..+.       +         .....+ -+..+-.|.+.|-.++-++|||++.+..|.      
T Consensus       100 ~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i  178 (241)
T d2pmka1         100 ANPGMSVEKV-IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI  178 (241)
T ss_dssp             TSTTCCHHHH-HHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHH
T ss_pred             cCccccHHHH-HHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHH
Confidence                  1111 111222111       0         011222 355567788999999999999999877441      


Q ss_pred             hhccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          273 DRVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       273 ~~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                      ....... ..+..+|++||+...+.. +++.+.|
T Consensus       179 ~~~l~~l-~~~~Tvi~itH~l~~~~~-~D~i~vl  210 (241)
T d2pmka1         179 MRNMHKI-CKGRTVIIIAHRLSTVKN-ADRIIVM  210 (241)
T ss_dssp             HHHHHHH-HTTSEEEEECSSGGGGTT-SSEEEEE
T ss_pred             HHHHHHH-hCCCEEEEEECCHHHHHh-CCEEEEE
Confidence            1111111 126789999999988754 5555444

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.61  E-value=3.1e-08  Score=82.93  Aligned_cols=138  Identities=17%  Similarity=0.211  Sum_probs=79.2

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe----EEEEEeCCCC----------
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE----VAMAVVSQTP----------  220 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~----~~wv~v~~~~----------  220 (333)
                      ++.+...+..++  +++|+|++|+|||||++.+.+..++..           .+..    ....+++|++          
T Consensus        31 L~~isl~i~~Ge--~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n  108 (253)
T d3b60a1          31 LRNINLKIPAGK--TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN  108 (253)
T ss_dssp             EEEEEEEECTTC--EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred             eeceEEEEcCCC--EEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhh
Confidence            344444455677  999999999999999999987654321           0110    0012334433          


Q ss_pred             ---------CHHHHHH--------HHHHHhC--CC-----CCCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh--
Q 046889          221 ---------SITKIQD--------EIAGWLG--IK-----ELPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD--  273 (333)
Q Consensus       221 ---------~~~~~~~--------~i~~~l~--~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--  273 (333)
                               +...+.+        +.+..+.  ..     .....+ -+.++-.|++.|-.++-++|||++.+..|..  
T Consensus       109 ~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~  188 (253)
T d3b60a1         109 IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE  188 (253)
T ss_dssp             HHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHH
T ss_pred             hhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHH
Confidence                     1122211        1222221  10     011223 3455667888888999999999998775421  


Q ss_pred             ----hccCCCCCCCcEEEEeeCChHHHhhcccceEecC
Q 046889          274 ----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDVR  307 (333)
Q Consensus       274 ----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l~  307 (333)
                          ....... .+..||++||+...+.. +++++.|+
T Consensus       189 ~~i~~~l~~l~-~~~Tvi~itH~l~~~~~-~D~v~vl~  224 (253)
T d3b60a1         189 RAIQAALDELQ-KNRTSLVIAHRLSTIEQ-ADEIVVVE  224 (253)
T ss_dssp             HHHHHHHHHHH-TTSEEEEECSCGGGTTT-CSEEEEEE
T ss_pred             HHHHHHHHHhc-cCCEEEEEECCHHHHHh-CCEEEEEE
Confidence                1111111 26789999999988754 56555443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.56  E-value=1e-06  Score=74.44  Aligned_cols=166  Identities=22%  Similarity=0.228  Sum_probs=99.0

Q ss_pred             ccccchHHHHHHHHHHhh----cC----C-ceEEEEEcCCCCcHHHHHHHHHHHHHhh----cCCCeEEEEEeCCCCCHH
Q 046889          157 YNFKSRESTMKDIMEAMK----DE----K-VSIIGICGRGGIGKTTLVKEIQKQAKEK----KMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~----~~----~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~  223 (333)
                      ..+.||+.+++.|...+.    .+    . ..++.|+||.|+||||+++.+.......    .......++.........
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   95 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY   95 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchh
Confidence            567899999998887663    11    1 2245667999999999999999876422    112234566666666777


Q ss_pred             HHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHHcc--CceEEEEeCCCCch--------h---hhh---ccCCCC-CCCcE
Q 046889          224 KIQDEIAGWLGIK-ELPDNDELVRASLLCKRIEK--QRVLVILDDLWVQI--------E---LDR---VGIPYG-NDGCK  285 (333)
Q Consensus       224 ~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~--------~---~~~---l~~~~~-~~g~~  285 (333)
                      .....+...++.. .............+......  ...++++|++....        .   +..   ...+.. .....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~  175 (287)
T d1w5sa2          96 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG  175 (287)
T ss_dssp             HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred             hHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhhccccee
Confidence            7777777777654 22334455555556555543  55677788664221        1   111   111222 22334


Q ss_pred             EEEeeCChHHHh-------hcc---cceEecCCCCHHHHHHHHHhhc
Q 046889          286 FLLTSRSRAACN-------QMQ---AHIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       286 vivTTr~~~v~~-------~~~---~~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      +|+++.......       .+.   ...+.+++.+.++..+++..++
T Consensus       176 ~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~  222 (287)
T d1w5sa2         176 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA  222 (287)
T ss_dssp             EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred             EEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhH
Confidence            444443333211       111   2238899999999999998765

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=6.9e-07  Score=74.09  Aligned_cols=163  Identities=12%  Similarity=0.127  Sum_probs=91.5

Q ss_pred             cccccccccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIA  230 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  230 (333)
                      .|....+++|.+..++.|..++..++. +.+.|+||.|+||||+|+.+.+..........       ...........+.
T Consensus         7 rP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~-------~~~~~~~~~~~i~   79 (239)
T d1njfa_           7 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIE   79 (239)
T ss_dssp             CCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCS-------SCCSCSHHHHHHH
T ss_pred             CCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCcccccc-------CccccchHHHHHH
Confidence            345567899999999999999987764 45789999999999999998877643221110       0001111111222


Q ss_pred             HHhCCC-----CCCCCCHHHHHHHHHHHH-----ccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChHH-
Q 046889          231 GWLGIK-----ELPDNDELVRASLLCKRI-----EKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRAA-  295 (333)
Q Consensus       231 ~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~v-  295 (333)
                      ..-...     .......+... .+.+.+     .++..++|||++...  .....+.  +......+.+|++|.+..- 
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~ir-~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i  158 (239)
T d1njfa_          80 QGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  158 (239)
T ss_dssp             HTCCTTEEEEETTCSSSHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             cCCCCeEEEecchhcCCHHHHH-HHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence            111000     00111122211 122222     135569999999754  1112221  2223446778888877643 


Q ss_pred             Hhhccc--ceEecCCCCHHHHHHHHHhhc
Q 046889          296 CNQMQA--HIVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       296 ~~~~~~--~~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ...+.+  ..+.+.+++.++-...+.+.+
T Consensus       159 ~~~i~SRc~~i~~~~~~~~~i~~~l~~i~  187 (239)
T d1njfa_         159 PVTILSRCLQFHLKALDVEQIRHQLEHIL  187 (239)
T ss_dssp             CHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             ChhHhhhhcccccccCcHHHhhhHHHHHH
Confidence            222222  238999999998888777654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.46  E-value=2.9e-08  Score=82.99  Aligned_cols=137  Identities=16%  Similarity=0.174  Sum_probs=79.6

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc-----------CCCe----EEEEEeCCCC---------
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK-----------MFDE----VAMAVVSQTP---------  220 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f~~----~~wv~v~~~~---------  220 (333)
                      .++++...+..++  .++|+|++|+|||||++.+.+...+..           .+..    ....+++|.+         
T Consensus        33 vL~~isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~e  110 (255)
T d2hyda1          33 ILKDINLSIEKGE--TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE  110 (255)
T ss_dssp             SEEEEEEEECTTC--EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred             ceeceEEEEcCCC--EEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHH
Confidence            4455555566677  999999999999999999986654321           1110    0112333332         


Q ss_pred             ---------CHHHHHHHHHHHhCCC-------C---------CCCCC-HHHHHHHHHHHHccCceEEEEeCCCCchhhh-
Q 046889          221 ---------SITKIQDEIAGWLGIK-------E---------LPDND-ELVRASLLCKRIEKQRVLVILDDLWVQIELD-  273 (333)
Q Consensus       221 ---------~~~~~~~~i~~~l~~~-------~---------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-  273 (333)
                               +..++ ...++..+..       .         ....+ -+..+-.|++.|-.++-++|||++.+..|.. 
T Consensus       111 Ni~~g~~~~~~~~~-~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t  189 (255)
T d2hyda1         111 NILLGRPTATDEEV-VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES  189 (255)
T ss_dssp             HHGGGCSSCCHHHH-HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred             HHhccCcCCCHHHH-HHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence                     11222 2223332221       0         01122 3445667888888899999999998775422 


Q ss_pred             -----hccCCCCCCCcEEEEeeCChHHHhhcccceEec
Q 046889          274 -----RVGIPYGNDGCKFLLTSRSRAACNQMQAHIVDV  306 (333)
Q Consensus       274 -----~l~~~~~~~g~~vivTTr~~~v~~~~~~~~~~l  306 (333)
                           ....... .+..+|++||+...+.. +++.+.|
T Consensus       190 ~~~i~~~l~~l~-~~~TvI~itH~~~~~~~-~D~ii~l  225 (255)
T d2hyda1         190 ESIIQEALDVLS-KDRTTLIVAHRLSTITH-ADKIVVI  225 (255)
T ss_dssp             HHHHHHHHHHHT-TTSEEEEECSSGGGTTT-CSEEEEE
T ss_pred             HHHHHHHHHHHh-cCCEEEEEeCCHHHHHh-CCEEEEE
Confidence                 1111112 26679999999988754 5555444

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=2.9e-06  Score=70.85  Aligned_cols=147  Identities=14%  Similarity=0.147  Sum_probs=83.7

Q ss_pred             ccccchHHHHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHH
Q 046889          157 YNFKSRESTMKDIMEAM---KD---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITK  224 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~  224 (333)
                      .++.|.+...+.|.+.+   ..         ...+.+.++||+|+|||+||+.+.+....  +     ++.++.. ++. 
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~--~-----~~~i~~~-~l~-   82 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--P-----FFTISGS-DFV-   82 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--C-----EEEECSC-SST-
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCC--C-----EEEEEhH-Hhh-
Confidence            46778777766665433   21         12456889999999999999999987641  1     2222211 000 


Q ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCc------------hh----hhhcc----CCCCCCCc
Q 046889          225 IQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQ------------IE----LDRVG----IPYGNDGC  284 (333)
Q Consensus       225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~----~~~l~----~~~~~~g~  284 (333)
                                 ..+...+...+...+...-...+++|++||+...            ..    +..+.    ....+.+.
T Consensus        83 -----------~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v  151 (256)
T d1lv7a_          83 -----------EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI  151 (256)
T ss_dssp             -----------TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred             -----------hcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCE
Confidence                       0112223333334444444568899999988521            00    11111    11123355


Q ss_pred             EEEEeeCChHHHh-hc-c----cceEecCCCCHHHHHHHHHhhcc
Q 046889          285 KFLLTSRSRAACN-QM-Q----AHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       285 ~vivTTr~~~v~~-~~-~----~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      -||.||..++... .+ .    ...+.+.+.+.++-.++|+...-
T Consensus       152 ~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~  196 (256)
T d1lv7a_         152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR  196 (256)
T ss_dssp             EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred             EEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhcc
Confidence            5666888765421 12 1    22388899999998989887653

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.43  E-value=1.2e-07  Score=76.38  Aligned_cols=103  Identities=22%  Similarity=0.297  Sum_probs=58.9

Q ss_pred             HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcC-----------CC-eEEEEE----eCCCCCHHHHH----
Q 046889          167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKM-----------FD-EVAMAV----VSQTPSITKIQ----  226 (333)
Q Consensus       167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-----------f~-~~~wv~----v~~~~~~~~~~----  226 (333)
                      +++...+..|+  +++|+||||+|||||++.+++..++...           +. ...|+.    +.+.....+.+    
T Consensus        18 ~~is~~i~~Ge--i~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~   95 (200)
T d1sgwa_          18 ERITMTIEKGN--VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA   95 (200)
T ss_dssp             EEEEEEEETTC--CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHH
T ss_pred             eceEEEEcCCC--EEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHH
Confidence            33344445677  8999999999999999999977653220           01 111221    11111222222    


Q ss_pred             ------------HHHHHHhCCCCCC----CCC-HHHHHHHHHHHHccCceEEEEeCCCCchh
Q 046889          227 ------------DEIAGWLGIKELP----DND-ELVRASLLCKRIEKQRVLVILDDLWVQIE  271 (333)
Q Consensus       227 ------------~~i~~~l~~~~~~----~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~  271 (333)
                                  ...++.++..+..    ..+ -+..+-.+.+.+...+-+++||+|.+..|
T Consensus        96 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD  157 (200)
T d1sgwa_          96 SLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID  157 (200)
T ss_dssp             HHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred             HhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccC
Confidence                        2233333332111    122 33456678888889999999999986643

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=9.7e-07  Score=78.13  Aligned_cols=153  Identities=12%  Similarity=0.159  Sum_probs=88.3

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhc----CCCeEEEEEeCCCCCHHHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKK----MFDEVAMAVVSQTPSITKIQDEIAG  231 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~  231 (333)
                      ..+.+||+.+++.+...|....-.-+.++|++|+|||+|+..+......+.    -.+..+|..-..     .++.    
T Consensus        21 ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~-----~l~a----   91 (387)
T d1qvra2          21 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG-----SLLA----   91 (387)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred             CCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHh-----hhhc----
Confidence            456899999999999999754444568899999999999887776654332    223455532111     1110    


Q ss_pred             HhCCCCCCCCCHHHHHHHHHHHHcc--CceEEEEeCCCCch---------hhhhccCCCCCC-CcEEEEeeCChHHHhhc
Q 046889          232 WLGIKELPDNDELVRASLLCKRIEK--QRVLVILDDLWVQI---------ELDRVGIPYGND-GCKFLLTSRSRAACNQM  299 (333)
Q Consensus       232 ~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~---------~~~~l~~~~~~~-g~~vivTTr~~~v~~~~  299 (333)
                      -    .......++....+...+..  .+++|++|++....         +...+..|.-.. .-++|-+|...+... +
T Consensus        92 g----~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~-~  166 (387)
T d1qvra2          92 G----AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-I  166 (387)
T ss_dssp             ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHH-H
T ss_pred             c----cCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHHHH-h
Confidence            0    01122344444444444433  46899999987542         233333333222 447777777666532 2


Q ss_pred             cc------c--eEecCCCCHHHHHHHHHhhc
Q 046889          300 QA------H--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       300 ~~------~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      ..      .  .+.+...+.+++..++....
T Consensus       167 e~d~al~rrF~~v~v~ep~~~~~~~il~~~~  197 (387)
T d1qvra2         167 EKDPALERRFQPVYVDEPTVEETISILRGLK  197 (387)
T ss_dssp             TTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred             cccHHHHHhcccccCCCCcHHHHHHHHHHHH
Confidence            22      1  18999999999999987554

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=1.1e-06  Score=73.22  Aligned_cols=51  Identities=12%  Similarity=0.161  Sum_probs=41.2

Q ss_pred             cccccccccchHHHHHHHHHHhhcC-CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          152 LSEGFYNFKSRESTMKDIMEAMKDE-KVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       152 ~~~~~~~~~gr~~~~~~l~~~l~~~-~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|.....++|++...+.|..++..+ ...-+.|+||+|+||||+|+.+....
T Consensus         6 ~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2           6 RPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            3455677999999999998887654 34457799999999999999998875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=4.2e-06  Score=67.62  Aligned_cols=153  Identities=7%  Similarity=0.019  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC----
Q 046889          162 RESTMKDIMEAMKDEKV-SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIK----  236 (333)
Q Consensus       162 r~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~----  236 (333)
                      .++..+.+...+..++. +.+.+.||.|+||||+|+.+...........   +-....    ..-...+.......    
T Consensus         7 ~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~---~~~~~~----~~~~~~i~~~~~~~~~~~   79 (207)
T d1a5ta2           7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---HKSCGH----CRGCQLMQAGTHPDYYTL   79 (207)
T ss_dssp             GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---TBCCSC----SHHHHHHHHTCCTTEEEE
T ss_pred             cHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccc---cccccc----cchhhhhhhccccccchh
Confidence            45678888888887764 4589999999999999999987653110000   000000    00001111110000    


Q ss_pred             ----CCCCCCHHHHHHHHHHHHc-----cCceEEEEeCCCCch--hhhhc--cCCCCCCCcEEEEeeCChH-HHhhcccc
Q 046889          237 ----ELPDNDELVRASLLCKRIE-----KQRVLVILDDLWVQI--ELDRV--GIPYGNDGCKFLLTSRSRA-ACNQMQAH  302 (333)
Q Consensus       237 ----~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~--~~~~l--~~~~~~~g~~vivTTr~~~-v~~~~~~~  302 (333)
                          .......++ +..+.+.+.     +++.++|+||+....  ....+  .+..+..++.+|+||++.. +...+.++
T Consensus        80 ~~~~~~~~i~~~~-ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SR  158 (207)
T d1a5ta2          80 APEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR  158 (207)
T ss_dssp             CCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred             hhhhcccccccch-hhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcce
Confidence                000111122 222333322     356799999987542  22222  1222344788888888765 33323233


Q ss_pred             --eEecCCCCHHHHHHHHHhhc
Q 046889          303 --IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       303 --~~~l~~L~~~e~~~lf~~~a  322 (333)
                        .+.+.+++.++....+.+..
T Consensus       159 c~~i~~~~~~~~~~~~~L~~~~  180 (207)
T d1a5ta2         159 CRLHYLAPPPEQYAVTWLSREV  180 (207)
T ss_dssp             SEEEECCCCCHHHHHHHHHHHC
T ss_pred             eEEEecCCCCHHHHHHHHHHcC
Confidence              39999999999998887654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=8.9e-06  Score=67.99  Aligned_cols=147  Identities=11%  Similarity=0.110  Sum_probs=83.0

Q ss_pred             ccccchHHHHHHHHHHh----hc---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHH
Q 046889          157 YNFKSRESTMKDIMEAM----KD---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l----~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  223 (333)
                      ..+.|-+..++.|.+.+    ..         ...+-+.++||.|+|||+|++.+.+....  +   ...+..      .
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~--~---~~~i~~------~   72 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--F---FFLING------P   72 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTC--E---EEEECH------H
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCC--e---EEEEEc------h
Confidence            34667777766666553    21         12346899999999999999999887531  1   112211      1


Q ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCch----------------hhhhc-cCCCCCCCcEE
Q 046889          224 KIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQI----------------ELDRV-GIPYGNDGCKF  286 (333)
Q Consensus       224 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l-~~~~~~~g~~v  286 (333)
                      .+        .. .........+...+...-..++++|++||+....                .+... .......+.-|
T Consensus        73 ~l--------~~-~~~g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv  143 (258)
T d1e32a2          73 EI--------MS-KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV  143 (258)
T ss_dssp             HH--------TT-SCTTHHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEE
T ss_pred             hh--------cc-cccccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccE
Confidence            11        00 1111112222333344445688999999986431                01111 11123335566


Q ss_pred             EEeeCChHHHhh-c-c----cceEecCCCCHHHHHHHHHhhcc
Q 046889          287 LLTSRSRAACNQ-M-Q----AHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       287 ivTTr~~~v~~~-~-~----~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      |.||...+-... + .    ...+.+...+.++...+|.....
T Consensus       144 i~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~  186 (258)
T d1e32a2         144 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK  186 (258)
T ss_dssp             EEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTT
T ss_pred             EEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhcc
Confidence            778887765221 1 1    12388888899999999987753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=1.8e-06  Score=71.97  Aligned_cols=162  Identities=9%  Similarity=0.033  Sum_probs=86.0

Q ss_pred             ccccccccchHHHHHHHHHHhhc-----------------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEE
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKD-----------------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAV  215 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~  215 (333)
                      |.....++|.+..++.|..++..                 +..+.+.++||+|+||||+|+.+++...     ....++.
T Consensus        10 P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~-----~~~~~~~   84 (253)
T d1sxja2          10 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQN   84 (253)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEEC
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHH-----hhhhccc
Confidence            44567789999999999888742                 2345799999999999999999998653     1233454


Q ss_pred             eCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCceEEEEeCCCCchh-----hhhccCCCCCCCcEEEEee
Q 046889          216 VSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRVLVILDDLWVQIE-----LDRVGIPYGNDGCKFLLTS  290 (333)
Q Consensus       216 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~g~~vivTT  290 (333)
                      .+...+.. .+.......-..........  ..........+..++++|++.....     +..+.-........+++|+
T Consensus        85 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~  161 (253)
T d1sxja2          85 ASDVRSKT-LLNAGVKNALDNMSVVGYFK--HNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILIC  161 (253)
T ss_dssp             TTSCCCHH-HHHHTGGGGTTBCCSTTTTT--C----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEE
T ss_pred             cccchhhH-HHHHHHHHHhhcchhhhhhh--hhhhcccccccceEEEeeeccccccchhhhhHHHhhhhccccccccccc
Confidence            44444432 22222222211100000000  0001111234667889998764311     2222110011122344444


Q ss_pred             CCh--HHHhhcccc--eEecCCCCHHHHHHHHHhhc
Q 046889          291 RSR--AACNQMQAH--IVDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       291 r~~--~v~~~~~~~--~~~l~~L~~~e~~~lf~~~a  322 (333)
                      .+.  .....+...  .+++.+.+.++....+.+..
T Consensus       162 ~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~  197 (253)
T d1sxja2         162 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIA  197 (253)
T ss_dssp             SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             ccccccccccccceeeeeeccccchhHHHHHHHHHH
Confidence            322  222222222  38999999998888877643

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.18  E-value=3.3e-06  Score=68.50  Aligned_cols=124  Identities=18%  Similarity=0.185  Sum_probs=74.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRV  259 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~  259 (333)
                      .+.|+|+.|+|||.|++.+++......  ...+++.      ..+....+...+...     .    ...+.+.+. ..-
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~-----~----~~~~~~~~~-~~d   99 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKRG--YRVIYSS------ADDFAQAMVEHLKKG-----T----INEFRNMYK-SVD   99 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTT--CCEEEEE------HHHHHHHHHHHHHHT-----C----HHHHHHHHH-TCS
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccCc--cceEEec------hHHHHHHHHHHHHcc-----c----hhhHHHHHh-hcc
Confidence            378999999999999999999876432  2344442      233444444333210     0    112333333 456


Q ss_pred             EEEEeCCCCc---hhhhh----ccCCCCCCCcEEEEeeCChHH---------Hhhcccce-EecCCCCHHHHHHHHHhhc
Q 046889          260 LVILDDLWVQ---IELDR----VGIPYGNDGCKFLLTSRSRAA---------CNQMQAHI-VDVRTLTEEESWRSAEGKR  322 (333)
Q Consensus       260 LlVlDdv~~~---~~~~~----l~~~~~~~g~~vivTTr~~~v---------~~~~~~~~-~~l~~L~~~e~~~lf~~~a  322 (333)
                      +|++||+...   ..|..    +.-.....|..+|+|++....         ..++.... +.++ .++++-.+++++++
T Consensus       100 ll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a  178 (213)
T d1l8qa2         100 LLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKL  178 (213)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHH
T ss_pred             chhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHH
Confidence            8999999643   23332    222223458889999986542         33444444 7786 57777788888776

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.17  E-value=9.7e-06  Score=67.22  Aligned_cols=146  Identities=12%  Similarity=0.140  Sum_probs=79.7

Q ss_pred             ccccchHHHHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHH
Q 046889          157 YNFKSRESTMKDIMEAM---KD---------EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITK  224 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~  224 (333)
                      ..++|-++..+.|.+.+   ..         ...+-+.++||.|+|||+||+.+.+...    ..   ++.++    ...
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~----~~---~~~i~----~~~   77 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----VP---FITAS----GSD   77 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT----CC---EEEEE----HHH
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcC----CC---EEEEE----hHH
Confidence            45777777666554432   11         1234689999999999999999998653    11   12221    122


Q ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHH-HccCceEEEEeCCCCch----------------hhhhcc---CCC-CCCC
Q 046889          225 IQDEIAGWLGIKELPDNDELVRASLLCKR-IEKQRVLVILDDLWVQI----------------ELDRVG---IPY-GNDG  283 (333)
Q Consensus       225 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~----------------~~~~l~---~~~-~~~g  283 (333)
                      +.    ..     +.. ........+.+. -...+++|+|||+....                .+..+.   -.+ .+.+
T Consensus        78 l~----~~-----~~g-~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~  147 (247)
T d1ixza_          78 FV----EM-----FVG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA  147 (247)
T ss_dssp             HH----HS-----CTT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred             hh----hc-----ccc-HHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCC
Confidence            21    10     111 111222233333 34578999999985210                011111   111 2224


Q ss_pred             cEEEEeeCChHHHh-hc---c--cceEecCCCCHHHHHHHHHhhcc
Q 046889          284 CKFLLTSRSRAACN-QM---Q--AHIVDVRTLTEEESWRSAEGKRR  323 (333)
Q Consensus       284 ~~vivTTr~~~v~~-~~---~--~~~~~l~~L~~~e~~~lf~~~a~  323 (333)
                      .-||.||..++... .+   +  ...|.+.+.+.++..++|+....
T Consensus       148 vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~  193 (247)
T d1ixza_         148 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR  193 (247)
T ss_dssp             EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhc
Confidence            44455777655421 11   1  22388999999999999987764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.11  E-value=1e-05  Score=63.16  Aligned_cols=25  Identities=48%  Similarity=0.623  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      -|+|+||+|+|||||++.+.+....
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            4899999999999999999988764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.08  E-value=2.6e-05  Score=64.03  Aligned_cols=51  Identities=25%  Similarity=0.397  Sum_probs=41.0

Q ss_pred             ccccccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKD-----EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      |.....++|.+..++.|..++..     ...+-+.++||+|+||||+|+.+.+...
T Consensus         5 P~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2           5 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccC
Confidence            44567899999999999888752     2234578999999999999999998764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.01  E-value=2.1e-05  Score=65.17  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..+-|.++||.|+|||+||+.+.+...
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhccc
Confidence            345688999999999999999998754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.81  E-value=1.2e-05  Score=66.13  Aligned_cols=51  Identities=20%  Similarity=0.309  Sum_probs=40.5

Q ss_pred             ccccccccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          153 SEGFYNFKSRESTMKDIMEAMKD-----EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       153 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      |.....++|.+..++.|..++..     ...+-+.++||.|+||||+|+.+.+...
T Consensus         5 P~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2           5 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            44567789999888888877752     2345678999999999999999988764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=6.3e-05  Score=60.27  Aligned_cols=88  Identities=16%  Similarity=0.123  Sum_probs=51.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH--HHHHHHHHHHhCCCC---CCCCCHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI--TKIQDEIAGWLGIKE---LPDNDELVRASLL  250 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~~~~l  250 (333)
                      +.+.||.++||.|+||||.+-.+....... .  ..+.+.....+..  .+-++...+.++.+-   ....+........
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~-g--~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~   83 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQ-G--KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDA   83 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTT-T--CCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHC-C--CcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHH
Confidence            446799999999999998777777666522 2  2344444455554  455667778887752   2223333333333


Q ss_pred             HHHHc-cCceEEEEeCC
Q 046889          251 CKRIE-KQRVLVILDDL  266 (333)
Q Consensus       251 ~~~l~-~k~~LlVlDdv  266 (333)
                      .+... ...-++++|=.
T Consensus        84 ~~~a~~~~~d~ilIDTa  100 (211)
T d2qy9a2          84 IQAAKARNIDVLIADTA  100 (211)
T ss_dssp             HHHHHHTTCSEEEECCC
T ss_pred             HHHHHHcCCCEEEeccC
Confidence            33222 23347777744

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=5.2e-05  Score=63.39  Aligned_cols=125  Identities=10%  Similarity=0.087  Sum_probs=71.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccC
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQ  257 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k  257 (333)
                      .+.|.++||.|+|||+|++.+.+....      . ++.++    ...+.       +  .........+...+...-...
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~------~-~~~~~----~~~l~-------~--~~~~~~~~~l~~~f~~A~~~~  100 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQA------N-FISIK----GPELL-------T--MWFGESEANVREIFDKARQAA  100 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTC------E-EEEEC----HHHHH-------T--SCTTTHHHHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCC------c-EEEEE----HHHhh-------h--ccccchHHHHHHHHHHHHhcC
Confidence            457889999999999999999987642      1 22222    11111       1  111122233333344444568


Q ss_pred             ceEEEEeCCCCch----------------hhhhcc--C-C-CCCCCcEEEEeeCChHHH-hhc---c--cceEecCCCCH
Q 046889          258 RVLVILDDLWVQI----------------ELDRVG--I-P-YGNDGCKFLLTSRSRAAC-NQM---Q--AHIVDVRTLTE  311 (333)
Q Consensus       258 ~~LlVlDdv~~~~----------------~~~~l~--~-~-~~~~g~~vivTTr~~~v~-~~~---~--~~~~~l~~L~~  311 (333)
                      +++|+|||+....                ....+.  + . ....+.-||.||+..+-. ..+   +  ...+.+.+.+.
T Consensus       101 p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~  180 (265)
T d1r7ra3         101 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE  180 (265)
T ss_dssp             SEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCC
T ss_pred             CcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHH
Confidence            8999999986321                011111  1 1 122355677788776542 112   1  12389999999


Q ss_pred             HHHHHHHHhhc
Q 046889          312 EESWRSAEGKR  322 (333)
Q Consensus       312 ~e~~~lf~~~a  322 (333)
                      ++-.++|+...
T Consensus       181 ~~R~~il~~~l  191 (265)
T d1r7ra3         181 KSRVAILKANL  191 (265)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998664

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.63  E-value=0.00017  Score=57.88  Aligned_cols=59  Identities=22%  Similarity=0.206  Sum_probs=37.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCC
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPS--ITKIQDEIAGWLGIK  236 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~--~~~~~~~i~~~l~~~  236 (333)
                      +..+.+|.++||.|+||||.+-.+......+ + ..+..+..- .+.  ..+-++...+.++.+
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~-~-~kV~lit~D-t~R~gA~eQL~~~a~~l~i~   68 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-G-KSVVLAAAD-TFRAAAIEQLKIWGERVGAT   68 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-T-CCEEEEEEC-TTCHHHHHHHHHHHHHHTCE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-C-CceEEEeec-ccccchhHHHHHHhhhcCcc
Confidence            3456799999999999998777776666432 2 234444332 223  244566777777764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.8e-05  Score=61.02  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      +|++|+|+.|+|||||++.+......
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999988764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.60  E-value=0.00018  Score=57.65  Aligned_cols=58  Identities=19%  Similarity=0.241  Sum_probs=31.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCC
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPS--ITKIQDEIAGWLGIK  236 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~--~~~~~~~i~~~l~~~  236 (333)
                      ..+.||.++||.|+||||.+-.+......+ .. .+..+..- .+.  ..+-++...+.++.+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~-g~-kV~lit~D-t~R~ga~eQL~~~a~~l~v~   69 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKK-GF-KVGLVGAD-VYRPAALEQLQQLGQQIGVP   69 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHT-TC-CEEEEECC-CSSHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CC-ceEEEEee-ccccchhHHHHHhccccCcc
Confidence            456799999999999998777666665533 22 23333332 222  233455556666654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.58  E-value=0.00034  Score=55.73  Aligned_cols=59  Identities=19%  Similarity=0.199  Sum_probs=38.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCC
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVS-QTPSITKIQDEIAGWLGIK  236 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~  236 (333)
                      ++.++|.++||.|+||||.+-.+....... . ..+..++.- ......+-++...+.++.+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~-g-~kV~lit~Dt~R~gA~eQL~~~a~~l~i~   63 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNL-G-KKVMFCAGDTFRAAGGTQLSEWGKRLSIP   63 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTT-T-CCEEEECCCCSSTTHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHC-C-CcEEEEEeccccccchhhHhhcccccCce
Confidence            345699999999999998777777666532 2 234444432 2234456677777777765

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=7.6e-05  Score=61.03  Aligned_cols=106  Identities=12%  Similarity=0.085  Sum_probs=54.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh--hcCCC----------eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKE--KKMFD----------EVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELV  245 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~f~----------~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~  245 (333)
                      .+++.|.|||+.||||+++.+.-..--  -+.|-          ..++..+....++..              .......
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~--------------~~S~F~~  106 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLAS--------------GRSTFMV  106 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-------------------------CHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhheeEEccCccccc--------------chhHHHH
Confidence            358999999999999999998644311  11111          122333332222111              1111111


Q ss_pred             HHHHHHHHH--ccCceEEEEeCCCCch---h---h-hhccCCC-CCCCcEEEEeeCChHHHh
Q 046889          246 RASLLCKRI--EKQRVLVILDDLWVQI---E---L-DRVGIPY-GNDGCKFLLTSRSRAACN  297 (333)
Q Consensus       246 ~~~~l~~~l--~~k~~LlVlDdv~~~~---~---~-~~l~~~~-~~~g~~vivTTr~~~v~~  297 (333)
                      -...+...+  .+++.|+++|++....   +   + ..+...+ ...++.+++|||......
T Consensus       107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            223344444  3478899999986442   1   1 1111111 234678999999987643

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=0.00039  Score=55.12  Aligned_cols=126  Identities=13%  Similarity=0.060  Sum_probs=70.9

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh--cCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCC
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK--KMFDEVAMAVVS-QTPSITKIQDEIAGWLGIKELPDN  241 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~  241 (333)
                      .++.+..++..+...-+.+.|++|+||||+|..+.+.....  .|.+. .++.-. .....++ .+++.+.+.....   
T Consensus         2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~-~~i~~~~~~I~Id~-IR~i~~~~~~~~~---   76 (198)
T d2gnoa2           2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNYSPE---   76 (198)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTSCCS---
T ss_pred             HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCE-EEEeCCcCCCCHHH-HHHHHHHHhhCcc---
Confidence            35566666777788899999999999999999998765421  12222 222211 1112222 2334444433211   


Q ss_pred             CHHHHHHHHHHHHccCceEEEEeCCCCc--hhhhhcc--CCCCCCCcEEEEeeCChH-HHhhcccce--EecCC
Q 046889          242 DELVRASLLCKRIEKQRVLVILDDLWVQ--IELDRVG--IPYGNDGCKFLLTSRSRA-ACNQMQAHI--VDVRT  308 (333)
Q Consensus       242 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~--~~~~~~g~~vivTTr~~~-v~~~~~~~~--~~l~~  308 (333)
                                   .+++-++|+|++...  .....+.  +..+..++.+|++|.+.. +...+.++.  +.+.+
T Consensus        77 -------------~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~  137 (198)
T d2gnoa2          77 -------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNV  137 (198)
T ss_dssp             -------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred             -------------cCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCC
Confidence                         245669999998754  2333331  222344777888887765 333333333  55654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.57  E-value=0.00032  Score=55.96  Aligned_cols=56  Identities=18%  Similarity=0.126  Sum_probs=34.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH--HHHHHHHHHHhCCC
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI--TKIQDEIAGWLGIK  236 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~  236 (333)
                      .+|+.++||+|+||||.+..+......+ .. .+..++. ..+..  .+.++...+.++.+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~-g~-kV~lit~-Dt~R~gA~eQL~~~a~~l~v~   67 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GR-RPLLVAA-DTQRPAAREQLRLLGEKVGVP   67 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHT-TC-CEEEEEC-CSSCHHHHHHHHHHHHHHTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHC-CC-cEEEEec-ccccchHHHHHHHHHHhcCCc
Confidence            4689999999999998777777666533 22 2333322 33332  33455556666654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.46  E-value=0.00026  Score=57.26  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=56.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH-Hhh-cCCCe----------EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA-KEK-KMFDE----------VAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRA  247 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~-~~~-~~f~~----------~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  247 (333)
                      ++.|.|||..||||+++.+.-.. -.+ +.|-+          .++..+....++..              .......-.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~~~~--------------~~StF~~el  102 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAG--------------GKSTFMVEM  102 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC--------------------CCSHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEEEECCCccccC--------------CccHHHHhH
Confidence            78899999999999999886442 111 11111          12233322211110              122233333


Q ss_pred             HHHHHHHc--cCceEEEEeCCCCchhh-------hhccCCCCCCCcEEEEeeCChHHHh
Q 046889          248 SLLCKRIE--KQRVLVILDDLWVQIEL-------DRVGIPYGNDGCKFLLTSRSRAACN  297 (333)
Q Consensus       248 ~~l~~~l~--~k~~LlVlDdv~~~~~~-------~~l~~~~~~~g~~vivTTr~~~v~~  297 (333)
                      ..+...+.  +++.|+++|++....+-       ..+.-.+...++.+++|||..++..
T Consensus       103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            44445544  48899999999754220       0111112234788999999988755

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.44  E-value=6.7e-05  Score=59.17  Aligned_cols=31  Identities=32%  Similarity=0.477  Sum_probs=26.3

Q ss_pred             hcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          174 KDEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       174 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ...+.-+|+|.|+.|+||||||+.+......
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3455668999999999999999999887764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.42  E-value=4e-05  Score=59.84  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ++.|+|.|+.|+||||||+.+....
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998765

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=4.3e-05  Score=59.50  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      +.|.|+|++|+|||||++.+.......
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            468999999999999999999887643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.36  E-value=5.9e-05  Score=56.99  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ++|.|+|++|+||||||+.+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47889999999999999987653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=4.1e-05  Score=58.39  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .|.|+||+|+||||+++.+.....
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            588889999999999999998753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.30  E-value=8.2e-05  Score=57.29  Aligned_cols=27  Identities=26%  Similarity=0.323  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      ++++|+|..|+|||||+..+......+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~   28 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVRE   28 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            589999999999999999999887754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.30  E-value=7.4e-05  Score=57.48  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ++|.|.|++|+||||+|+.+....
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            479999999999999999998654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.30  E-value=8.3e-05  Score=57.58  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .+|.|+|++|+||||+|+.+......
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            58999999999999999999988754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.0001  Score=56.66  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..+++.|+|++|+||||+++.+.....
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456999999999999999999987763

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.26  E-value=6.9e-05  Score=57.71  Aligned_cols=24  Identities=42%  Similarity=0.578  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +.|.|+|++|+||||+++.+....
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999998765

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.21  E-value=0.00011  Score=58.19  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..+.+|.|+||+|+||||+++.+....
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            455799999999999999999998765

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.16  E-value=0.0016  Score=53.95  Aligned_cols=82  Identities=21%  Similarity=0.189  Sum_probs=58.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKR  253 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~  253 (333)
                      +++-|.|+.|+|||||+..+.......+  ..++|++....+++.     +++++|.+.     ..+.+.++....+...
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk~g--~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l  130 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL  130 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHhCC--CEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHHHHH
Confidence            4999999999999999998887765332  357788888777763     677888751     1334566666656555


Q ss_pred             Hcc-CceEEEEeCCC
Q 046889          254 IEK-QRVLVILDDLW  267 (333)
Q Consensus       254 l~~-k~~LlVlDdv~  267 (333)
                      +.. +..|+|+|-+.
T Consensus       131 ~~~~~~~liIiDSi~  145 (268)
T d1xp8a1         131 VRSGAIDVVVVDSVA  145 (268)
T ss_dssp             HTTTCCSEEEEECTT
T ss_pred             HhcCCCcEEEEeccc
Confidence            555 45799999764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.14  E-value=0.00014  Score=56.57  Aligned_cols=26  Identities=19%  Similarity=0.357  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ++|+|.|+.|+||||+++.+......
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999988764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.00015  Score=57.32  Aligned_cols=28  Identities=32%  Similarity=0.449  Sum_probs=24.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ++..++|.|+||+|+||||+|+.+....
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3557799999999999999999998765

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.13  E-value=0.00013  Score=56.29  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ++|.|.|+.|+||||+|+.+.....
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4899999999999999999987753

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.09  E-value=0.0019  Score=53.39  Aligned_cols=83  Identities=18%  Similarity=0.150  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKR  253 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~  253 (333)
                      +++-|.|++|+|||||+-.++......+  ..++|+.....++++.     ++++|.+.     ..+...++....+...
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~~~q~~g--~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~~~~~l  133 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVANAQAAG--GVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALEIADML  133 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHHHHTT--CEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHHHHHhcCC--CEEEEEECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHHHHHHHH
Confidence            4999999999999999988776655333  3578988888777543     56667641     1234456655555555


Q ss_pred             Hcc-CceEEEEeCCCC
Q 046889          254 IEK-QRVLVILDDLWV  268 (333)
Q Consensus       254 l~~-k~~LlVlDdv~~  268 (333)
                      +.. +..|||+|.+-.
T Consensus       134 ~~~~~~~liIiDSi~a  149 (269)
T d1mo6a1         134 IRSGALDIVVIDSVAA  149 (269)
T ss_dssp             HHTTCEEEEEEECSTT
T ss_pred             HhcCCCCEEEEecccc
Confidence            554 467999997753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00016  Score=56.77  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..+|.++|++|+||||+|+.+.....
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35889999999999999999988765

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.07  E-value=0.00018  Score=55.38  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ...|.|.|++|+||||+++.+....
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            3478999999999999999998764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.97  E-value=0.00021  Score=55.07  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ++|.|.|++|+||||+++.+...
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999988654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.95  E-value=0.00044  Score=58.90  Aligned_cols=46  Identities=20%  Similarity=0.356  Sum_probs=34.0

Q ss_pred             cccchHHHHHHHHHHhh--------------cCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          158 NFKSRESTMKDIMEAMK--------------DEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~--------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .++|.++.++.+...+.              ....+.+.++||.|+|||.||+.+.+...
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccc
Confidence            45788877777765441              11345688999999999999999998753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.95  E-value=0.00024  Score=54.37  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      |.|+|++|+||||+++.+.....
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67889999999999999998874

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00029  Score=55.48  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+|.|.||+|+||||+|+.+....
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.00026  Score=54.30  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      |.++|+.|+||||+++.+.....
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            55679999999999999998774

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.00031  Score=55.87  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .+|.++|.+|+||||||+.+......
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            57999999999999999999977653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.91  E-value=0.00052  Score=56.80  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+..|.++||+|+||||||+.+.+...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            456789999999999999999998764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.89  E-value=0.00024  Score=54.81  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .|.++|+.|+||||+++.+.....
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            466889999999999999998774

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.0028  Score=52.26  Aligned_cols=82  Identities=17%  Similarity=0.160  Sum_probs=56.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCCCCHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKE-----LPDNDELVRASLLCKR  253 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~  253 (333)
                      +++-|.|++|+|||||+-.+.......+  ...+|++....++..     .++.+|.+.     ....+.++....+...
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q~~g--~~~vyidtE~~~~~~-----~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l  127 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL  127 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCC--CEEEEEccccccCHH-----HHHHhCCCHHHEEEecCCCHHHHHHHHHHH
Confidence            4999999999999999999887765433  346788877777653     356777741     1233455555555555


Q ss_pred             Hcc-CceEEEEeCCC
Q 046889          254 IEK-QRVLVILDDLW  267 (333)
Q Consensus       254 l~~-k~~LlVlDdv~  267 (333)
                      +.. +..|+|+|.+.
T Consensus       128 ~~~~~~~liViDSi~  142 (263)
T d1u94a1         128 ARSGAVDVIVVDSVA  142 (263)
T ss_dssp             HHHTCCSEEEEECGG
T ss_pred             HhcCCCCEEEEECcc
Confidence            554 44699999774

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.86  E-value=0.00031  Score=54.82  Aligned_cols=23  Identities=22%  Similarity=0.586  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +|.|+||+|+|||||++.+....
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            78999999999999999987664

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00037  Score=55.82  Aligned_cols=26  Identities=23%  Similarity=0.395  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +-+|+|.|+.|+|||||++.+.....
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999999987764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.84  E-value=0.0004  Score=54.12  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ++|.|.|+.|+||||+++.+......
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            58899999999999999999988763

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00034  Score=56.12  Aligned_cols=25  Identities=36%  Similarity=0.549  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +||+|.||+|+||||+++.+.+...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5999999999999999999998874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.80  E-value=0.0026  Score=53.85  Aligned_cols=69  Identities=20%  Similarity=0.270  Sum_probs=41.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHccCce
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIKELPDNDELVRASLLCKRIEKQRV  259 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~  259 (333)
                      ++.++||+|+|||.||+.+......+..|-   -+..++-.+                ......+.....+.+... +++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~---~~~~~~~~~----------------~~~G~~e~~~~~~f~~a~-~~~  184 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYA---TVRFGEPLS----------------GYNTDFNVFVDDIARAML-QHR  184 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCE---EEEBSCSST----------------TCBCCHHHHHHHHHHHHH-HCS
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeE---EEEhhHhhh----------------cccchHHHHHHHHHHHHh-hcc
Confidence            566689999999999999998875333331   223332211                112223333344444433 367


Q ss_pred             EEEEeCCCC
Q 046889          260 LVILDDLWV  268 (333)
Q Consensus       260 LlVlDdv~~  268 (333)
                      +|++|++..
T Consensus       185 ilf~DEid~  193 (321)
T d1w44a_         185 VIVIDSLKN  193 (321)
T ss_dssp             EEEEECCTT
T ss_pred             EEEeehhhh
Confidence            999999864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00032  Score=54.32  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      +..+|.++|++|+||||+|+.+..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            445999999999999999987754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.73  E-value=0.00039  Score=54.51  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..|.|.||.|+||||+++.+.....
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4678999999999999999987663

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.72  E-value=0.0047  Score=49.88  Aligned_cols=84  Identities=19%  Similarity=0.163  Sum_probs=51.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC---------------CCCCCCH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLGIK---------------ELPDNDE  243 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~---------------~~~~~~~  243 (333)
                      .++.|.|++|+|||+|+..+.....  .+.....|++....  ...+.+ .+..++..               .......
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~~--~~~~~~~~is~e~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEES--RAQLLR-NAYSWGMDFEEMERQNLLKIVCAYPESAGL  101 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSSC--HHHHHH-HHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHH--HhccccceeeccCC--HHHHHH-HHHHcCCChHHHhhcCceEEEEeecchhhH
Confidence            3899999999999999999987754  34455667765443  233222 22233221               0112234


Q ss_pred             HHHHHHHHHHHcc-CceEEEEeCCC
Q 046889          244 LVRASLLCKRIEK-QRVLVILDDLW  267 (333)
Q Consensus       244 ~~~~~~l~~~l~~-k~~LlVlDdv~  267 (333)
                      ......+...+.. +..++|+|.+.
T Consensus       102 ~~~~~~i~~~i~~~~~~~vviDs~~  126 (242)
T d1tf7a2         102 EDHLQIIKSEINDFKPARIAIDSLS  126 (242)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECHH
T ss_pred             HHHHHHHHHHHHhcCCceeeeecch
Confidence            5555566666555 56788999653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0017  Score=55.37  Aligned_cols=39  Identities=18%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             HHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          167 KDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       167 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      ..+...+.  .++..+|+|+|++|+|||||...+.......
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            34444443  4678899999999999999999998777644

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00097  Score=55.61  Aligned_cols=95  Identities=18%  Similarity=0.197  Sum_probs=53.0

Q ss_pred             HHHHHhh---cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEE-EEeCCCCCHHHHHHHHHHHhCCC---CCCC
Q 046889          168 DIMEAMK---DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAM-AVVSQTPSITKIQDEIAGWLGIK---ELPD  240 (333)
Q Consensus       168 ~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w-v~v~~~~~~~~~~~~i~~~l~~~---~~~~  240 (333)
                      +++..+.   .|+  .++|+|+.|+|||+|+..+......+. -.+++. ..+.+..  +. ...+.......   ....
T Consensus        32 r~ID~l~PigrGQ--r~~I~g~~g~GKT~l~~~i~~~~~~~~-~~~v~~~~~iger~--~e-v~~~~~~~~~~vv~~t~d  105 (289)
T d1xpua3          32 RVLDLASPIGRGQ--RGLIVAPPKAGKTMLLQNIAQSIAYNH-PDCVLMVLLIDERP--EE-VTEMQRLVKGEVVASTFD  105 (289)
T ss_dssp             HHHHHHSCCBTTC--EEEEEECSSSSHHHHHHHHHHHHHHHC-TTSEEEEEEEEECH--HH-HHHHHHHCSSEEEEEETT
T ss_pred             eeeeecccccCCC--eeeEeCCCCCCHHHHHHHHHHHHhhcC-CCeEEEEEeeceeH--HH-HHhHHhhcceEEEeccCC
Confidence            3444443   355  899999999999999999988765433 233333 3333332  22 22222222111   1122


Q ss_pred             CCHH------HHHHHHHHHHcc--CceEEEEeCCCC
Q 046889          241 NDEL------VRASLLCKRIEK--QRVLVILDDLWV  268 (333)
Q Consensus       241 ~~~~------~~~~~l~~~l~~--k~~LlVlDdv~~  268 (333)
                      .+..      .....+.+++.+  +..||++||+..
T Consensus       106 ~~~~~r~~~~~~a~~iAEyfrd~G~dVLli~Dsltr  141 (289)
T d1xpua3         106 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR  141 (289)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEESCHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhccCceeecCcHHH
Confidence            2221      223456666654  789999998853

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.71  E-value=0.0015  Score=55.65  Aligned_cols=40  Identities=23%  Similarity=0.488  Sum_probs=30.1

Q ss_pred             HHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          165 TMKDIMEAMK--DEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       165 ~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ....+...+.  .++..+|+|.|++|+|||||...+......
T Consensus        36 ~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~   77 (323)
T d2qm8a1          36 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA   77 (323)
T ss_dssp             HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhh
Confidence            3444444442  467789999999999999999999876543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.70  E-value=0.0017  Score=51.73  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ....+..+|.+.|.+|+||||||+.+.....
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3345567999999999999999999987664

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.64  E-value=0.0048  Score=50.96  Aligned_cols=91  Identities=19%  Similarity=0.246  Sum_probs=58.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCC-HHHHHHHHHHHh--CCC----------CCCCC
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPS-ITKIQDEIAGWL--GIK----------ELPDN  241 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l--~~~----------~~~~~  241 (333)
                      .++  .++|+|..|+|||+|+..+...... .+-+..+++.+.+... ..++.+.+.+.-  ...          .....
T Consensus        67 kGQ--r~~If~~~g~GKt~l~~~i~~~~~~-~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv~~~s~~  143 (276)
T d2jdid3          67 KGG--KIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNE  143 (276)
T ss_dssp             TTC--EEEEEECTTSSHHHHHHHHHHHHTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTS
T ss_pred             CCC--EEEeeCCCCCCHHHHHHHHHHHHHh-hCCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceEEEEEECCCC
Confidence            355  7999999999999999998876432 3345677888887654 345566665531  100          01122


Q ss_pred             CHH------HHHHHHHHHHc---cCceEEEEeCCCC
Q 046889          242 DEL------VRASLLCKRIE---KQRVLVILDDLWV  268 (333)
Q Consensus       242 ~~~------~~~~~l~~~l~---~k~~LlVlDdv~~  268 (333)
                      +..      .....+.+++.   +++.|+++||+..
T Consensus       144 ~~~~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsltr  179 (276)
T d2jdid3         144 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR  179 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEcchhH
Confidence            222      12345777775   5789999999864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.0005  Score=54.07  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      |.|+||+|+|||||++.+.....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999987754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.60  E-value=0.00065  Score=54.55  Aligned_cols=24  Identities=38%  Similarity=0.403  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +|+|-||+|+||||+|+.+.....
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            688999999999999999998764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00058  Score=53.49  Aligned_cols=24  Identities=38%  Similarity=0.515  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      -|.|+||+|+|||||++.+.....
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            478999999999999999987653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.58  E-value=0.00069  Score=52.49  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|.|.|++|+||||+++.+....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999998765

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00067  Score=52.75  Aligned_cols=24  Identities=13%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +.|.|+||+|+|||||++.+....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            478999999999999999888654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.57  E-value=0.0024  Score=54.23  Aligned_cols=45  Identities=18%  Similarity=0.399  Sum_probs=33.8

Q ss_pred             cccchHHHHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          158 NFKSRESTMKDIMEAMKD---------EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .++|.+..++.+...+..         ....++.++||.|+|||.||+.+....
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            457777777777665531         123478899999999999999998876

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.55  E-value=0.0007  Score=53.25  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ++|.|.||+|+||||+++.+....
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            499999999999999999998754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.55  E-value=0.00076  Score=52.45  Aligned_cols=23  Identities=30%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|.|+|+.|+||||+++.+....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.48  E-value=0.00076  Score=52.84  Aligned_cols=22  Identities=41%  Similarity=0.584  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQ  199 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~  199 (333)
                      +.+|+|+|+.|+||||+|+.+-
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            5689999999999999998763

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.48  E-value=0.00088  Score=54.37  Aligned_cols=24  Identities=38%  Similarity=0.540  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ||+|+|+.|+|||||.+.+.....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            799999999999999999987654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.47  E-value=0.00097  Score=52.32  Aligned_cols=26  Identities=31%  Similarity=0.393  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +...|.|+||.|+||||+++.+....
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            34567789999999999999998754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.46  E-value=0.001  Score=52.03  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .++| |+||+|+||||+++.+....
T Consensus         4 ~rii-l~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           4 VRAV-LLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHHHH
T ss_pred             cEEE-EECCCCCCHHHHHHHHHHHh
Confidence            3455 78999999999999998765

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.46  E-value=0.00085  Score=52.05  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .|.|.|+.|+||||+++.+.....
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478899999999999999997763

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.001  Score=52.91  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ++.|+||+|+|||||.+.+....
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            88999999999999999988764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0014  Score=50.86  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|.|.|+.|+||||+++.+....
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46688999999999999998765

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0012  Score=50.96  Aligned_cols=23  Identities=26%  Similarity=0.140  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|.|+||.|+||||+++.+....
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999998765

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.015  Score=45.86  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEE
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAM  213 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~w  213 (333)
                      .|+|-|+.|+||||+++.+....... .+....+
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~~-g~~~~~~   36 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVF   36 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEE
Confidence            78899999999999999999887643 3333343

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0029  Score=52.49  Aligned_cols=39  Identities=23%  Similarity=0.552  Sum_probs=30.7

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      +..+...+..+..++|.+.|.||+||||++-.+......
T Consensus         8 ~~~~~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~   46 (279)
T d1ihua2           8 LSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLAD   46 (279)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            445566666777889999999999999998887766654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0053  Score=51.69  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+-+|+|.|+.|+||||+++.+.....
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            456999999999999999999988764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0031  Score=53.54  Aligned_cols=46  Identities=22%  Similarity=0.367  Sum_probs=36.0

Q ss_pred             ccccchHHHHHHHHHHhh---------cCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          157 YNFKSRESTMKDIMEAMK---------DEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       157 ~~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..++|.++.++.+...+.         +....++.++||.|+|||.||+.+....
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhc
Confidence            456788888888776663         1234588999999999999999998765

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0092  Score=49.08  Aligned_cols=29  Identities=21%  Similarity=0.335  Sum_probs=23.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      .+.  ++.|+|++|+|||||+..+......+
T Consensus        28 pg~--~~~i~G~~G~GKS~l~l~la~~ia~g   56 (274)
T d1nlfa_          28 AGT--VGALVSPGGAGKSMLALQLAAQIAGG   56 (274)
T ss_dssp             TTS--EEEEEESTTSSHHHHHHHHHHHHHTC
T ss_pred             CCc--EEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence            455  78899999999999999888765443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.23  E-value=0.0077  Score=51.14  Aligned_cols=115  Identities=19%  Similarity=0.194  Sum_probs=62.9

Q ss_pred             HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHH-HHHHHHHHhCCCCCCCCCHHH
Q 046889          167 KDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITK-IQDEIAGWLGIKELPDNDELV  245 (333)
Q Consensus       167 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~  245 (333)
                      .-+...+..+.  -|.|.|+.|+|||||++.+........   .  .+++.......- ....   ..........   .
T Consensus       157 ~~l~~~v~~~~--nili~G~tgSGKTT~l~al~~~i~~~~---r--ivtiEd~~El~l~~~~~---~~~~~~~~~~---~  223 (323)
T d1g6oa_         157 SAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIPKEE---R--IISIEDTEEIVFKHHKN---YTQLFFGGNI---T  223 (323)
T ss_dssp             HHHHHHHHHTC--CEEEEESTTSSHHHHHHHHGGGSCTTC---C--EEEEESSCCCCCSSCSS---EEEEECBTTB---C
T ss_pred             HHHHHHHHhCC--CEEEEeeccccchHHHHHHhhhccccc---c--eeeccchhhhhcccccc---cceeccccch---h
Confidence            33444444444  478999999999999999887654321   1  222222211100 0000   0000000111   2


Q ss_pred             HHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCc-EEEEeeCChHHH
Q 046889          246 RASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGC-KFLLTSRSRAAC  296 (333)
Q Consensus       246 ~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~-~vivTTr~~~v~  296 (333)
                      ....+...|...+-.+|+.++...+.+..+...  +.|. -++-|.|-....
T Consensus       224 ~~~ll~~~lR~~pd~iivgEiR~~ea~~~l~a~--~tGh~g~~tT~Ha~s~~  273 (323)
T d1g6oa_         224 SADCLKSCLRMRPDRIILGELRSSEAYDFYNVL--CSGHKGTLTTLHAGSSE  273 (323)
T ss_dssp             HHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHH--HTTCSCEEEEECCSSHH
T ss_pred             HHHHHHHHhccCCCcccCCccCchhHHHHHHHH--HhcCCcEEEEECCCCHH
Confidence            344567788888899999999887766544221  2232 278888877653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.22  E-value=0.0013  Score=56.40  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=33.9

Q ss_pred             cccccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          156 FYNFKSRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       156 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ...++|.+..+..|.......+.+-+.|.|+.|+||||||+.+..-
T Consensus         6 f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_           6 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             hhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHh
Confidence            3567999887776655443222235889999999999999998764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0052  Score=48.75  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      ..|+|-|+.|+||||+++.+.+.....
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~   30 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAA   30 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            378999999999999999999887653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.06  E-value=0.0018  Score=48.49  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      |.|+|+.|+|||||.+.+.+..
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999987654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.05  E-value=0.0012  Score=55.04  Aligned_cols=27  Identities=22%  Similarity=0.441  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ..+|+|.|.+|+||||+++.+.+....
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~~   30 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFRR   30 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            459999999999999999998877653

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.03  E-value=0.0014  Score=51.46  Aligned_cols=27  Identities=30%  Similarity=0.306  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+..+|+|-|+.|+||||+++.+....
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999987554

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.00  E-value=0.0017  Score=50.84  Aligned_cols=27  Identities=19%  Similarity=0.561  Sum_probs=22.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      +++.+.|+|+|..|+|||||.+.+.+.
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCC
Confidence            345567999999999999999999853

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.01  Score=47.58  Aligned_cols=43  Identities=16%  Similarity=0.055  Sum_probs=29.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhhc----CCCeEEEEEeCCCCC
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEKK----MFDEVAMAVVSQTPS  221 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~  221 (333)
                      .++.|.|++|+|||||+..+........    .-...+|+.......
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~   81 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR   81 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHH
Confidence            3999999999999999988765432111    123566776666554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.96  E-value=0.0034  Score=50.25  Aligned_cols=33  Identities=27%  Similarity=0.566  Sum_probs=25.3

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ++.|...| .++  +..++|++|+|||||.+.+..+
T Consensus        86 ~~~L~~~l-~~k--t~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          86 IEELKEYL-KGK--ISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHHHHHH-SSS--EEEEECSTTSSHHHHHHHHSTT
T ss_pred             HhhHHHHh-cCC--eEEEECCCCCCHHHHHHhhcch
Confidence            44555555 455  7889999999999999988654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.91  E-value=0.0029  Score=52.30  Aligned_cols=27  Identities=30%  Similarity=0.572  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      +.|+|+|.||+||||++-.+.......
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~   28 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAM   28 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            579999999999999999988777643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.86  E-value=0.0024  Score=48.24  Aligned_cols=23  Identities=39%  Similarity=0.443  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -|+|+|.+|+|||||.+.+.+..
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999987653

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.79  E-value=0.002  Score=56.79  Aligned_cols=118  Identities=14%  Similarity=0.121  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCCC
Q 046889          164 STMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPS--ITKIQDEIAGWLGIKELPDN  241 (333)
Q Consensus       164 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~~~~  241 (333)
                      ...+.+... .....++|.|.||.|+||||.+..+.+.....  -..+  +++..+..  ....     .+...   ...
T Consensus       145 ~~~~~l~~l-~~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~--~~~i--~tiEdPiE~~~~~~-----~q~~v---~~~  211 (401)
T d1p9ra_         145 HNHDNFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNI--LTVEDPIEFDIDGI-----GQTQV---NPR  211 (401)
T ss_dssp             HHHHHHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCE--EEEESSCCSCCSSS-----EEEEC---BGG
T ss_pred             HHHHHHHHH-HhhhhceEEEEcCCCCCccHHHHHHhhhhcCC--CceE--EEeccCcccccCCC-----Ceeee---cCC
Confidence            344444444 34455799999999999999999988876321  1122  23333221  1000     00000   011


Q ss_pred             CHHHHHHHHHHHHccCceEEEEeCCCCchhhhhccCCCCCCCcEEEEeeCChHH
Q 046889          242 DELVRASLLCKRIEKQRVLVILDDLWVQIELDRVGIPYGNDGCKFLLTSRSRAA  295 (333)
Q Consensus       242 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~g~~vivTTr~~~v  295 (333)
                      ........++..|+..+-+|++.++.+....... +.....|-.|+-|.|-.+.
T Consensus       212 ~~~~~~~~l~~~lR~dPDvi~igEiRd~~ta~~a-~~aa~tGhlV~tTlHa~~a  264 (401)
T d1p9ra_         212 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIA-VQASLTGHLVMSTLHTNTA  264 (401)
T ss_dssp             GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHH-HHHHHTTCEEEEEECCSSS
T ss_pred             cCCCHHHHHHHHHhhcCCEEEecCcCChHHHHHH-HHHHhcCCeEEEEeccCch
Confidence            1112456688889999999999999877554444 2222346677777776643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.76  E-value=0.0039  Score=49.14  Aligned_cols=26  Identities=35%  Similarity=0.544  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      +|+|-|+-|+||||+++.+.......
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~   27 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            68999999999999999999887643

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0085  Score=49.80  Aligned_cols=30  Identities=23%  Similarity=0.387  Sum_probs=24.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      ++..++|.+.|.||+||||++-.+......
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~   34 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAE   34 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHH
Confidence            455679999999999999999888777654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0028  Score=48.60  Aligned_cols=24  Identities=38%  Similarity=0.660  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ++.|+|+|..|+|||||.+.+.+.
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999999864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.67  E-value=0.0054  Score=46.80  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=25.8

Q ss_pred             HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          166 MKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       166 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      +..+...+.... .-|.|+|.+|+|||||+..+.+.
T Consensus         4 ~~~~~~~~~~k~-~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1           4 FTRIWRLFNHQE-HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HHHHHHHHTTSC-EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCe-EEEEEECCCCCCHHHHHHHHhcC
Confidence            445555554444 45779999999999999988654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0033  Score=49.53  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .|+|+|++|+|||||...+.+.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999865

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.63  E-value=0.0032  Score=48.47  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .+.|+|+|..|+|||||.+.+.+.
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999998865

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.58  E-value=0.0094  Score=44.77  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=23.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEK  205 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~  205 (333)
                      .+|.+.|.=|+||||+++.+.......
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             eEEEEecCCCccHHHHHHHHHhhcccc
Confidence            489999999999999999999887543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.57  E-value=0.0033  Score=49.73  Aligned_cols=20  Identities=40%  Similarity=0.612  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEI  198 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v  198 (333)
                      -+|+|+|..|+||||+++.+
T Consensus         3 ~iIgITG~igSGKStv~~~l   22 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999866

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.56  E-value=0.0039  Score=46.61  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|+++|++|+|||||+..+.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.069  Score=42.65  Aligned_cols=54  Identities=19%  Similarity=0.068  Sum_probs=35.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh----hcCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE----KKMFDEVAMAVVSQTPSITKIQDEIAGWL  233 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~----~~~f~~~~wv~v~~~~~~~~~~~~i~~~l  233 (333)
                      .++.|.|++|+|||+|+..+......    ........|+......... ....+....
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   95 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD-RLRDIADRF   95 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH-HHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHH-HHHHHHhhh
Confidence            49999999999999999998865421    1234456677766655533 333344333

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.0047  Score=51.37  Aligned_cols=28  Identities=25%  Similarity=0.185  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      .+-+|+|-|+.|+|||||+..+......
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~~   53 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYNHLME   53 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHHHHHH
Confidence            3559999999999999999988776643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.50  E-value=0.0032  Score=48.09  Aligned_cols=22  Identities=36%  Similarity=0.625  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .|+|+|+.|+|||||++.+.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0047  Score=49.89  Aligned_cols=26  Identities=31%  Similarity=0.368  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ++.|+|-|+-|+||||+++.+.....
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            56899999999999999999987654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.45  E-value=0.03  Score=46.28  Aligned_cols=89  Identities=16%  Similarity=0.126  Sum_probs=49.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhc-CC-----CeEEEEEeCCCCCH-HHHHHHHHHHhCCC------CCCCCCHHH-
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKK-MF-----DEVAMAVVSQTPSI-TKIQDEIAGWLGIK------ELPDNDELV-  245 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f-----~~~~wv~v~~~~~~-~~~~~~i~~~l~~~------~~~~~~~~~-  245 (333)
                      .++|+|..|+|||+|+..+........ ..     ...+++.+.+.... .++.+.+...-...      .....+... 
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~~tvvv~~ts~~~~~~r  149 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQ  149 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcccccccceEEEEECCCCCHHHH
Confidence            799999999999999887765533211 11     13456666665432 33444433321111      111222211 


Q ss_pred             -----HHHHHHHHHc--cCceEEEEeCCCC
Q 046889          246 -----RASLLCKRIE--KQRVLVILDDLWV  268 (333)
Q Consensus       246 -----~~~~l~~~l~--~k~~LlVlDdv~~  268 (333)
                           ....+.+++.  +++.|+++||+..
T Consensus       150 ~~~~~~a~tiAEyfrd~G~~VLll~Dsltr  179 (285)
T d2jdia3         150 YLAPYSGCSMGEYFRDNGKHALIIYDDLSK  179 (285)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEEcChHH
Confidence                 1234555554  5889999999853

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0039  Score=49.44  Aligned_cols=19  Identities=32%  Similarity=0.585  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEI  198 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v  198 (333)
                      +|+|+|+.|+||||.++.+
T Consensus         5 iIgitG~igSGKStv~~~l   23 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAF   23 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            8999999999999999865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.0043  Score=46.96  Aligned_cols=22  Identities=23%  Similarity=0.561  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||||++.+.+.
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3779999999999999987754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.39  E-value=0.0039  Score=47.15  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|+.|+|||||.+.+.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4779999999999999987643

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0043  Score=48.89  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ++.|.|++|+|||+|+..+....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            99999999999999999987664

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0047  Score=49.56  Aligned_cols=25  Identities=32%  Similarity=0.499  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      +.+|+.|.|.-|+|||||++.+...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4679999999999999999998765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0049  Score=47.14  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||+..+.+.
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3779999999999999988755

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.0049  Score=46.60  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||||+..+.+.
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988765

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.31  E-value=0.0049  Score=46.89  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||||+..+.+.
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3789999999999999988754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.31  E-value=0.0087  Score=48.76  Aligned_cols=44  Identities=27%  Similarity=0.503  Sum_probs=33.0

Q ss_pred             cccchHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          158 NFKSRESTMKDIMEAMKD---EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .|+|..+.++.+...+..   .+. -|.|.|+.|+|||++|+.+....
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~-pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAEC-PVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCS-CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCC-CEEEECCCCcCHHHHHHHHHHhc
Confidence            367877777777766642   222 47899999999999999997643

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.005  Score=46.67  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|.+|+|||||++.+.+.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.28  E-value=0.0063  Score=46.50  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      +..-|.|+|.+|+|||||...+.+.
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3346889999999999999988644

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.0054  Score=48.34  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|+|+|+.|+|||||.+.+.+.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.24  E-value=0.0053  Score=46.91  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|+|+|..|+|||||+..+.+.
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4789999999999999988754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0048  Score=46.81  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||||+..+.+.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988765

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.21  E-value=0.025  Score=46.58  Aligned_cols=88  Identities=18%  Similarity=0.168  Sum_probs=50.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCH-HHHHHHHHHHhCCC------CCCCCC------HHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSI-TKIQDEIAGWLGIK------ELPDND------ELVR  246 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~~l~~~------~~~~~~------~~~~  246 (333)
                      .++|+|..|+|||+|+..+.....  .+-..++++.+.+.... .++.+++...=...      ...+.+      ....
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~~--~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a~~~  146 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQQ--GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYT  146 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTCC--TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHhhhc--ccCceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHHHHH
Confidence            689999999999999987654432  33456677777765432 22333322210000      011111      1234


Q ss_pred             HHHHHHHHc--cCceEEEEeCCCCc
Q 046889          247 ASLLCKRIE--KQRVLVILDDLWVQ  269 (333)
Q Consensus       247 ~~~l~~~l~--~k~~LlVlDdv~~~  269 (333)
                      ...+.+++.  +++.|+++||+...
T Consensus       147 a~tiAEyfrd~G~~Vlll~Dsltr~  171 (276)
T d1fx0a3         147 GAALAEYFMYRERHTLIIYDDLSKQ  171 (276)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             HHHHHHHHHHcCCceeEEeeccHHH
Confidence            455666665  48899999998643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0055  Score=46.70  Aligned_cols=22  Identities=36%  Similarity=0.625  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||++.+.+.
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0034  Score=50.64  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .+.|+|-|+-|+||||+++.+....
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999987654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.15  E-value=0.0059  Score=46.30  Aligned_cols=23  Identities=17%  Similarity=0.465  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -|.|+|..|+|||||++.+.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37799999999999999987653

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0058  Score=46.14  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~  201 (333)
                      |.|+|..|+|||||++.+.+.
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0059  Score=46.40  Aligned_cols=22  Identities=36%  Similarity=0.703  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      |.++|..|+|||+|++.+.+..
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~   26 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKR   26 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6799999999999999988653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.12  E-value=0.0061  Score=46.05  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|+.|+|||||+..+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3678999999999999988654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0059  Score=46.25  Aligned_cols=21  Identities=29%  Similarity=0.691  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~  201 (333)
                      |.++|..|+|||||+..+.+.
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988765

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.11  E-value=0.0084  Score=49.93  Aligned_cols=26  Identities=35%  Similarity=0.576  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKE  204 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~  204 (333)
                      +.|+|.|.||+||||++-.+......
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~   28 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAE   28 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            57889999999999999988766653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0059  Score=46.26  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .-|.|+|..|+|||||++.+.+.
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35789999999999999988754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0062  Score=46.17  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||++.+.+.
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0051  Score=46.83  Aligned_cols=21  Identities=38%  Similarity=0.768  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~  201 (333)
                      |.++|..|+|||||+..+.+.
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999987754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.08  E-value=0.012  Score=50.77  Aligned_cols=25  Identities=32%  Similarity=0.395  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ...+..+||.|+|||-||+.+....
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhc
Confidence            4468899999999999999997654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0064  Score=46.53  Aligned_cols=22  Identities=23%  Similarity=0.581  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||+..+.+.
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.0064  Score=46.01  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|.+|+|||||+..+...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.0072  Score=48.09  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..|+|-|+-|+||||+++.+....+
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4899999999999999999987765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0064  Score=46.31  Aligned_cols=22  Identities=27%  Similarity=0.582  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||++.+.+.
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.02  E-value=0.0078  Score=48.60  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .+|+|+|.-|+||||+|+.+.+.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            58999999999999999988654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.02  E-value=0.0048  Score=47.47  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .|+|+|..|+|||||.+.+.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0056  Score=46.57  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||||++.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            3789999999999999988654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0066  Score=46.38  Aligned_cols=22  Identities=27%  Similarity=0.587  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||++.+.+.
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999988754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.00  E-value=0.027  Score=45.28  Aligned_cols=45  Identities=20%  Similarity=0.158  Sum_probs=31.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhh----cCCCeEEEEEeCCCCCHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQAKEK----KMFDEVAMAVVSQTPSIT  223 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~  223 (333)
                      .++.|.|++|+|||||+..+.......    .......|+.........
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE   85 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHH
Confidence            499999999999999999887654321    123456677666665543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0069  Score=46.04  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||||+..+.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988755

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.93  E-value=0.0049  Score=47.59  Aligned_cols=21  Identities=29%  Similarity=0.559  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      -|+|+|+.|+|||||++.+.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999998754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0072  Score=46.28  Aligned_cols=22  Identities=36%  Similarity=0.437  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||+..+.+.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678999999999999887765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.89  E-value=0.0064  Score=46.39  Aligned_cols=22  Identities=36%  Similarity=0.453  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      --|.++|++|+|||||++.+.+
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3588999999999999998854

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.007  Score=46.74  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      -|.|+|..|+|||||++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            478999999999999988764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0079  Score=45.56  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      |.++|..|+|||+|++.+....
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999887653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0022  Score=50.07  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +..|+|+||+||||++..+.--.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999997554

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.85  E-value=0.019  Score=49.37  Aligned_cols=26  Identities=23%  Similarity=0.100  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .+.+.++||+|+|||++|..+.+...
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            35899999999999999999998875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.84  E-value=0.007  Score=46.78  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      -|.++|.+|+|||||++.+....-
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~   27 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHE   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCC
Confidence            368999999999999998765543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.83  E-value=0.0077  Score=46.96  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||+..+...
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            4789999999999999988764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0079  Score=45.88  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||||+..+...
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999987654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.0079  Score=45.07  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|+++|..|+|||||.+.+.+.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.009  Score=45.37  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||+|++.+.+.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999987654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.72  E-value=0.009  Score=45.32  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||+|+..+.+.
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4779999999999999988765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.70  E-value=0.009  Score=46.03  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||||+..+.+.
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.0039  Score=47.89  Aligned_cols=25  Identities=16%  Similarity=0.389  Sum_probs=21.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      ++...|+|+|..++|||||.+.+.+
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            4456799999999999999998754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0092  Score=45.94  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||++.+...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999988764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.68  E-value=0.0059  Score=46.92  Aligned_cols=21  Identities=24%  Similarity=0.612  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~  201 (333)
                      |+|+|..|+|||||++.+.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999998643

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.64  E-value=0.012  Score=44.75  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|.+|+|||||++.+.+.
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4679999999999999988643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.63  E-value=0.0079  Score=46.32  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .|+|+|..|+|||||+..+.+.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999988754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.01  Score=45.27  Aligned_cols=21  Identities=29%  Similarity=0.646  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~  201 (333)
                      |.++|.+|+|||||+..+.+.
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            889999999999999887653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.55  E-value=0.0089  Score=46.48  Aligned_cols=19  Identities=37%  Similarity=0.593  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEI  198 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v  198 (333)
                      -|.++|.+|+|||||+..+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4779999999999999988

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.01  Score=45.87  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||++.+.+.
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4889999999999999987754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.0098  Score=45.32  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      -|.++|..|+|||||++.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.011  Score=45.31  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~  201 (333)
                      |.++|..|+|||||++.+.+.
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.011  Score=45.44  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||+|++.+.+.
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4679999999999999988765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.46  E-value=0.011  Score=44.74  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .-|.|+|..|+|||||++.+.+.
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35789999999999999988754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.011  Score=44.77  Aligned_cols=22  Identities=27%  Similarity=0.607  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||||+..+.+.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999998764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.011  Score=45.19  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -|.++|..|+|||||+..+.+..
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            57899999999999999887653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.37  E-value=0.023  Score=46.65  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhhcCC
Q 046889          173 MKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEKKMF  208 (333)
Q Consensus       173 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f  208 (333)
                      +..++  ++.|.|++|+|||||+..+..+......+
T Consensus        32 ~~~G~--l~vi~G~~G~GKT~~~~~la~~~a~~~g~   65 (277)
T d1cr2a_          32 ARGGE--VIMVTSGSGMGKSTFVRQQALQWGTAMGK   65 (277)
T ss_dssp             BCTTC--EEEEECSTTSSHHHHHHHHHHHHHHTSCC
T ss_pred             CCCCe--EEEEEeCCCCCHHHHHHHHHHhhhhhccc
Confidence            44566  88999999999999999988665433333

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.34  E-value=0.0082  Score=50.26  Aligned_cols=44  Identities=9%  Similarity=0.255  Sum_probs=27.6

Q ss_pred             CceEEEEeCCCCchhh---hhcc--CCCCCCCcEEEEeeCChHHHhhcc
Q 046889          257 QRVLVILDDLWVQIEL---DRVG--IPYGNDGCKFLLTSRSRAACNQMQ  300 (333)
Q Consensus       257 k~~LlVlDdv~~~~~~---~~l~--~~~~~~g~~vivTTr~~~v~~~~~  300 (333)
                      +.-++++|++++..+-   ..+.  +........||||||++.+...+.
T Consensus       241 ~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d  289 (308)
T d1e69a_         241 PSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAAD  289 (308)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCS
T ss_pred             cCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcc
Confidence            5568899999876331   1110  111123678999999999876553

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.34  E-value=0.012  Score=45.47  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|.+|+|||+|++.+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3679999999999999988654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.012  Score=45.62  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|..|+|||+|+..+.+.
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3779999999999999887754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.27  E-value=0.019  Score=50.84  Aligned_cols=46  Identities=22%  Similarity=0.393  Sum_probs=33.2

Q ss_pred             cccchHHHHHHHHHHhhc--------C------CceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          158 NFKSRESTMKDIMEAMKD--------E------KVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       158 ~~~gr~~~~~~l~~~l~~--------~------~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .++|.++..+.+.-.+.+        .      ..+-|.++||.|+|||-||+.+.....
T Consensus        15 yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhC
Confidence            467877777666554421        1      123589999999999999999987653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.24  E-value=0.0082  Score=46.14  Aligned_cols=23  Identities=39%  Similarity=0.394  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      ---|.++|..|+|||||.+.+.+
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34577999999999999998753

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.19  E-value=0.021  Score=45.38  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=26.8

Q ss_pred             eEEEEE-cCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEe
Q 046889          179 SIIGIC-GRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVV  216 (333)
Q Consensus       179 ~vi~I~-G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v  216 (333)
                      ++|+|+ |.||+||||++..+.......+  ..+.++..
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g--~~VlliD~   38 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLG--HDVTIVDA   38 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCC--CCEEEEeC
Confidence            688888 7899999999999887776432  24555554

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.0064  Score=46.33  Aligned_cols=21  Identities=43%  Similarity=0.640  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046889          181 IGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       181 i~I~G~~G~GKTtLa~~v~~~  201 (333)
                      |.++|..|+|||||+..+.+.
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            778999999999999887654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.12  E-value=0.014  Score=44.64  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      -|.|.|++|+||||||..+..
T Consensus        16 gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            688999999999999987664

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.11  E-value=0.011  Score=47.34  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .++.|.|++|+|||+|+..+....
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            499999999999999999998664

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.04  E-value=0.016  Score=46.19  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.++|.+|+|||||++.+...
T Consensus         8 KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999987543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.86  E-value=0.018  Score=47.48  Aligned_cols=26  Identities=31%  Similarity=0.345  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          177 KVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       177 ~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      +.+-|+|+|..|+|||||+..+....
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            45679999999999999999987543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.80  E-value=0.0059  Score=45.77  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -|+++|..|+|||||++.+.+..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998763

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.75  E-value=0.0097  Score=45.34  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=8.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|+|..|+|||||+..+.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999876643

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.69  E-value=0.023  Score=46.70  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .+.|+|+|..|.|||||+..+...
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHH
Confidence            357999999999999999988644

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.63  E-value=0.019  Score=43.57  Aligned_cols=22  Identities=36%  Similarity=0.487  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|.|.|++|+|||||+..+...
T Consensus        17 gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc
Confidence            6889999999999999776654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.60  E-value=0.019  Score=43.90  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      -|.|.|++|+||||||..+..
T Consensus        17 gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999987764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.57  E-value=0.036  Score=45.16  Aligned_cols=37  Identities=27%  Similarity=0.556  Sum_probs=26.7

Q ss_pred             HHHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          165 TMKDIMEAMKDE--KVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       165 ~~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .+..+...+...  ..-.|+|+|..|+|||||.+.+++.
T Consensus        17 ~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          17 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            344444444432  3346889999999999999999875

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.56  E-value=0.032  Score=44.34  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=26.1

Q ss_pred             eEEEEE-cCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEe
Q 046889          179 SIIGIC-GRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVV  216 (333)
Q Consensus       179 ~vi~I~-G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v  216 (333)
                      ++|+|+ +.||+||||++..+....... .. .+..+..
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~-g~-~VlliD~   39 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDR-GR-KVLAVDG   39 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHT-TC-CEEEEEC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhC-CC-CEEEEeC
Confidence            489999 669999999999998777643 23 3444443

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.54  E-value=0.038  Score=43.74  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .++.|.|++|+|||+|+..+...
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            38999999999999999775543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.50  E-value=0.019  Score=50.08  Aligned_cols=20  Identities=30%  Similarity=0.592  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQ  199 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~  199 (333)
                      +..|+|++|+|||+++..+.
T Consensus        27 l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            77899999999999999874

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.48  E-value=0.0084  Score=48.08  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      +..++|++|+|||||.+.+..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            5679999999999999988754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.41  E-value=0.026  Score=45.12  Aligned_cols=24  Identities=38%  Similarity=0.553  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ++|+|+|..++|||||+..+....
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            479999999999999999887653

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.041  Score=43.05  Aligned_cols=28  Identities=21%  Similarity=0.205  Sum_probs=23.6

Q ss_pred             eEEEEEcCC-CCcHHHHHHHHHHHHHhhc
Q 046889          179 SIIGICGRG-GIGKTTLVKEIQKQAKEKK  206 (333)
Q Consensus       179 ~vi~I~G~~-G~GKTtLa~~v~~~~~~~~  206 (333)
                      +.+.|.|-+ |+||||++-.+......++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G   30 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAG   30 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCC
Confidence            468899998 9999999999988876543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.30  E-value=0.062  Score=44.36  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHH-HHHHHHH
Q 046889          180 IIGICGRGGIGKTTL-VKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtL-a~~v~~~  201 (333)
                      .+.|.|++|+||||. +..+...
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~l   38 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHL   38 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHH
Confidence            467899999999965 4444433

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=92.21  E-value=0.039  Score=42.11  Aligned_cols=21  Identities=43%  Similarity=0.533  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      -|+|+|..++|||||++.+.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            499999999999999998874

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=0.092  Score=44.88  Aligned_cols=58  Identities=17%  Similarity=0.113  Sum_probs=33.8

Q ss_pred             HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHHHhh-cCCCeEEEEEeCCCCCHHHH
Q 046889          165 TMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQAKEK-KMFDEVAMAVVSQTPSITKI  225 (333)
Q Consensus       165 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~~~~~~~  225 (333)
                      ....+...+ .++  +..|.|++|+||||++..+....... ..-...+.+..+.......+
T Consensus       153 Q~~A~~~al-~~~--~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L  211 (359)
T d1w36d1         153 QKVAAAVAL-TRR--ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL  211 (359)
T ss_dssp             HHHHHHHHH-TBS--EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHH
T ss_pred             HHHHHHHHH-cCC--eEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHH
Confidence            444444444 344  89999999999999887665444321 22234556655554333333

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.048  Score=44.89  Aligned_cols=27  Identities=19%  Similarity=0.386  Sum_probs=24.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          175 DEKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       175 ~~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ++++.||+|+|+-++|||||+..+++.
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            567889999999999999999998864

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.69  E-value=0.08  Score=44.10  Aligned_cols=23  Identities=26%  Similarity=0.289  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHHH-HHHHHHH
Q 046889          180 IIGICGRGGIGKTTLV-KEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa-~~v~~~~  202 (333)
                      .+.|.|++|+||||.+ ..+....
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHHH
Confidence            3678899999999654 4444333

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.19  E-value=0.076  Score=41.49  Aligned_cols=22  Identities=32%  Similarity=0.374  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|+|+|..+.|||||+..+...
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            3899999999999999988643

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=1.9  Score=33.84  Aligned_cols=42  Identities=19%  Similarity=0.274  Sum_probs=33.9

Q ss_pred             chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          161 SRESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       161 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ......+.+...+..+......|+|.-|+|||-++-......
T Consensus        59 ~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~  100 (233)
T d2eyqa3          59 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA  100 (233)
T ss_dssp             HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHH
Confidence            355677788888888888899999999999999887766554

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.75  E-value=0.066  Score=45.26  Aligned_cols=26  Identities=31%  Similarity=0.325  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      +..|.|=|+-|+||||+++.+.+...
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhc
Confidence            34688889999999999999988765

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=89.86  E-value=0.082  Score=44.53  Aligned_cols=24  Identities=29%  Similarity=0.290  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ..|.|=|+-|+||||+++.+.+..
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC--
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHh
Confidence            358899999999999999987554

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.61  E-value=0.15  Score=44.18  Aligned_cols=22  Identities=18%  Similarity=0.513  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      --|+|+|..|+|||||.+.+.+
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3589999999999999999985

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.41  E-value=0.086  Score=44.48  Aligned_cols=24  Identities=38%  Similarity=0.373  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .|.|=|+-|+||||+++.+.+...
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            588899999999999999987654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=88.72  E-value=0.23  Score=38.31  Aligned_cols=40  Identities=15%  Similarity=0.248  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          164 STMKDIMEAMKD-EKVSIIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       164 ~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      ..+..+..+|.. .+-..+.++||++.|||+++..+.+-..
T Consensus        38 ~Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          38 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            344555555532 2345899999999999999999887763

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.49  E-value=0.19  Score=42.40  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          176 EKVSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       176 ~~~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .+.+-|+|+|..|.|||||+..+...
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~   40 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQR   40 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHH
Confidence            56678999999999999999988643

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=88.44  E-value=0.33  Score=39.43  Aligned_cols=39  Identities=18%  Similarity=0.199  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          164 STMKDIMEAMKD--EKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       164 ~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      .....+..+|..  +.-..+.++|+++.|||+++..+..-.
T Consensus        88 ~f~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344455555632  334588999999999999999988765

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.39  E-value=0.11  Score=42.56  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -|+|+|.+.+|||||...+.+..
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999988653

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.26  E-value=0.16  Score=41.93  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .-|+|+|.+.+|||||...+.+.
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            46999999999999999999865

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.96  E-value=0.34  Score=34.52  Aligned_cols=51  Identities=12%  Similarity=0.085  Sum_probs=30.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQAKEKKMFDEVAMAVVSQTPSITKIQDEIAGWLG  234 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~  234 (333)
                      -++..|++|-|+|||+++-.++..      ....+++.++...-..+..+.+.+.++
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~------~~~~vli~~P~~~l~~q~~~~~~~~~~   58 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAHG   58 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHT------TTCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHH------cCCcEEEEcChHHHHHHHHHHHHHHhh
Confidence            357889999999999987555432      233455555543333334444444443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.55  E-value=0.14  Score=42.67  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      -|+|+|.+.+|||||.+.+.+..
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            38999999999999999997553

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.08  E-value=0.25  Score=38.90  Aligned_cols=20  Identities=30%  Similarity=0.351  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQ  199 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~  199 (333)
                      -|+|+|..+.|||||+..+.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            48899999999999998774

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.08  E-value=3.3  Score=33.08  Aligned_cols=41  Identities=22%  Similarity=0.185  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHHHH
Q 046889          162 RESTMKDIMEAMKDEKVSIIGICGRGGIGKTTLVKEIQKQA  202 (333)
Q Consensus       162 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  202 (333)
                      ....+++|...+..+......|.|.-|+|||-++-......
T Consensus        88 Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~  128 (264)
T d1gm5a3          88 QKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN  128 (264)
T ss_dssp             HHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHH
Confidence            45677888888877877788999999999999887766443

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=85.75  E-value=0.25  Score=38.06  Aligned_cols=22  Identities=41%  Similarity=0.466  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      -|+|+|..+.|||||+..+...
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            3899999999999999988653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=84.64  E-value=0.27  Score=37.68  Aligned_cols=21  Identities=43%  Similarity=0.569  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      -|+|+|.-..|||||+..+.+
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            479999999999999999964

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=84.28  E-value=0.3  Score=42.34  Aligned_cols=65  Identities=12%  Similarity=0.098  Sum_probs=37.3

Q ss_pred             CceEEEEeCCCCchh---hhhccCCCCCCCcEEEEeeCChHHH-------------hhcccceEecC-CCCHHHHHHHHH
Q 046889          257 QRVLVILDDLWVQIE---LDRVGIPYGNDGCKFLLTSRSRAAC-------------NQMQAHIVDVR-TLTEEESWRSAE  319 (333)
Q Consensus       257 k~~LlVlDdv~~~~~---~~~l~~~~~~~g~~vivTTr~~~v~-------------~~~~~~~~~l~-~L~~~e~~~lf~  319 (333)
                      .++++++|+.++...   +..+.....+.|..+++.|.+..-.             ..|.+. +.+. .-++.+..+.+.
T Consensus       276 ~~v~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~~yg~~~a~~i~~n~~t~-i~~~~~~~d~~tae~~s  354 (433)
T d1e9ra_         276 RRLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSL-VVLGGSRTDPKTNEDMS  354 (433)
T ss_dssp             CCEEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHHHHCHHHHHHHHTTCCEE-EEEECCTTCHHHHHHHH
T ss_pred             CceEEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHHHHhHHHHHHHHHhcCcE-EEecCCCCCHHHHHHHH
Confidence            456888998876532   3333333355588999999885332             112222 3333 345666777776


Q ss_pred             hhc
Q 046889          320 GKR  322 (333)
Q Consensus       320 ~~a  322 (333)
                      +..
T Consensus       355 ~~~  357 (433)
T d1e9ra_         355 LSL  357 (433)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.84  E-value=0.43  Score=33.44  Aligned_cols=24  Identities=8%  Similarity=-0.021  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQKQAK  203 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~~~~  203 (333)
                      .|.+.|..|+||+|||+.+.....
T Consensus         8 ~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           8 SIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             EEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            788999999999999999987764

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=83.09  E-value=0.34  Score=40.03  Aligned_cols=17  Identities=41%  Similarity=0.548  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCcHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVK  196 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~  196 (333)
                      +-.+.|.+|.|||||..
T Consensus        16 ~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          16 VAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEEECSTTSSHHHHHC
T ss_pred             EEEEEccCCCCccccee
Confidence            67899999999999873

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=83.07  E-value=0.4  Score=37.67  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 046889          179 SIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       179 ~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      ..++++|....|||||+..+...
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~~   32 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLHD   32 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHH
Confidence            34789999999999999988643

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.78  E-value=0.37  Score=37.16  Aligned_cols=21  Identities=48%  Similarity=0.624  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      .|+|+|.-..|||||+..+.+
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEEEccCCcHHHHHHHHHh
Confidence            499999999999999999864

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=82.78  E-value=0.53  Score=33.10  Aligned_cols=18  Identities=22%  Similarity=0.041  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCcHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKE  197 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~  197 (333)
                      .+.|.++.|+|||..+-.
T Consensus         9 ~~il~~~tGsGKT~~~~~   26 (140)
T d1yksa1           9 TTVLDFHPGAGKTRRFLP   26 (140)
T ss_dssp             EEEECCCTTSSTTTTHHH
T ss_pred             cEEEEcCCCCChhHHHHH
Confidence            678899999999976643

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=82.53  E-value=0.32  Score=40.32  Aligned_cols=17  Identities=41%  Similarity=0.548  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCcHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVK  196 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~  196 (333)
                      +-.+.|.+|.|||||..
T Consensus        16 valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEEECTTSCHHHHTC
T ss_pred             EEEEEccCCCCcccccc
Confidence            77889999999999863

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.41  E-value=0.41  Score=39.65  Aligned_cols=16  Identities=44%  Similarity=0.584  Sum_probs=14.6

Q ss_pred             EEEEEcCCCCcHHHHH
Q 046889          180 IIGICGRGGIGKTTLV  195 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa  195 (333)
                      +-.+.|.+|.|||||.
T Consensus        16 ~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            6679999999999997

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=81.03  E-value=0.39  Score=39.03  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 046889          178 VSIIGICGRGGIGKTTLVKEIQKQ  201 (333)
Q Consensus       178 ~~vi~I~G~~G~GKTtLa~~v~~~  201 (333)
                      .-.++|+|++.+|||||+..+.+.
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             ceEEEEEecCccchhhhhhhhhcc
Confidence            346999999999999999998864

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.89  E-value=0.54  Score=37.33  Aligned_cols=21  Identities=19%  Similarity=0.189  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      -|+|+|..+.|||||+..+..
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~   28 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIY   28 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            588999999999999988753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=80.02  E-value=0.42  Score=38.19  Aligned_cols=21  Identities=33%  Similarity=0.230  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046889          180 IIGICGRGGIGKTTLVKEIQK  200 (333)
Q Consensus       180 vi~I~G~~G~GKTtLa~~v~~  200 (333)
                      -|+|+|..+.|||||+..+..
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEEeeCCCCHHHHHHHHHH
Confidence            389999999999999998854