Citrus Sinensis ID: 046901

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
METNQVVTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPELADTLPRPASSKPEDVQLAAQEAALSFRKPIAENCSLGPVRIGLSPSQIQAINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESIWD
Secondary Structure (PSIPRED)
ccccccccccccccEEEEcccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHccccccEEccccHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccHHHHHHHHHcccccccccccccccccccHccccccccccccc
Coil and Loop (DISEMBL)
metnqvvtkqsafrgvrmrkwgKWVSeirqpgtktriwlgsyetpEMAAAAYDVAALHfrgrsgahlnfpeladtlprpasskpeDVQLAAQEAALSFrkpiaencslgpvriglspsqiqainespldspkMWMELaagtfwspeqmLLYDGIDEvcewgnydmqvESIWD
Flexible Loop (DISEMBL)
metnqvvtkqsafrgvrmrkwgkwvseirqpgtktriWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPELADTLPRPASSKPEDVQLAAQEAALSFRKPIAENCSLGPVRIGLSPSQIQAINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESIWD
Low Complexity Region (SEG)
METNQVVTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPELADTLPRPASSKPEDVQLAAQEAALSFRKPIAENCSLGPVRIGLSPSQIQAINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESIWD
Disordered region (IsUnstruct)
***********AFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNF*******************************PIAENCSLGPVRIGL****************KMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESI**
Disordered Region (DISOPRED)
***************VRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPELADTL*********DVQLAAQ***********************************LDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESIWD
Disordered Region (DISEMBL)
METNQVVTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPELADTLPR**********LAAQEAALSFRKPIAENCSLGPVRIGLSPSQIQAINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESIWD
Disordered Region (DISPRO)
*******TKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPELADTLPRPASSKPEDVQLAAQEAAL*************************AINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESIWD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METNQVVTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPELADTLPRPASSKPEDVQLAAQEAALSFRKPIAENCSLGPVRIGLSPSQIQAINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESIWD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q9C9I2	183	Ethylene-responsive trans	yes	no	0.883	0.830	0.497	3e-37
Q9LQ28	184	Ethylene-responsive trans	no	no	0.738	0.690	0.659	3e-36
Q9SUK8	179	Ethylene-responsive trans	no	no	0.470	0.452	0.707	2e-27
Q9ZQP3	194	Ethylene-responsive trans	no	no	0.476	0.422	0.686	1e-26
Q9LYD3	236	Dehydration-responsive el	no	no	0.5	0.364	0.643	5e-26
Q8LBQ7	295	Ethylene-responsive trans	no	no	0.540	0.315	0.574	3e-25
Q9M080	221	Ethylene-responsive trans	no	no	0.511	0.398	0.617	1e-24
Q9LU18	236	Ethylene-responsive trans	no	no	0.459	0.334	0.662	3e-24
Q39127	218	Ethylene-responsive trans	no	no	0.5	0.394	0.609	6e-24
Q9M210	256	Ethylene-responsive trans	no	no	0.447	0.300	0.653	8e-24

>sp|Q9C9I2|ERF21_ARATH Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1

 Score =  154 bits (389), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 108/171 (63%), Gaps = 19/171 (11%)

Query: 11  SAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFP 70
           SA+RGVR RKWGKWVSEIR+PGTK RIWLGS+ETPEMAA AYDVAA HFRGR  A LNFP
Sbjct: 22  SAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGRE-ARLNFP 80

Query: 71  ELADTLPRPASSKPEDVQLAAQEAAL---------SFRKPIAENCSLGPVRIGLSPSQIQ 121
           ELA +LPRPA S  + +++A  EA L         + +   + + ++ P  + LSP +IQ
Sbjct: 81  ELASSLPRPADSSSDSIRMAVHEATLCRTTEGTESAMQVDSSSSSNVAPTMVRLSPREIQ 140

Query: 122 AINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESIWD 172
           AINES L SP   M     + + P   + +    E+  W  Y  Q + +WD
Sbjct: 141 AINESTLGSPTTMMH----STYDP---MEFANDVEMNAWETY--QSDFLWD 182

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ28|ERF22_ARATH Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1

 Score =  150 bits (380), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/135 (65%), Positives = 103/135 (76%), Gaps = 8/135 (5%)

Query: 8   TKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHL 67
             Q ++RG+R RKWGKWVSEIR+PG KTRIWLGSYET EMAAAAYD AALH RGR G +L
Sbjct: 15  VNQLSYRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGR-GTNL 73

Query: 68  NFPELADTLPRPASSKPEDVQLAAQEAALSFR-----KPIAENCSLGPVRIGLSPSQIQA 122
           NFPEL D+ PRP SS  E +Q AAQ+AAL F+     +P  E+   G  R+GLSP QIQA
Sbjct: 74  NFPELVDSFPRPESSSSEHIQAAAQDAALMFKPGRLSEPALESGQ-GLSRVGLSPDQIQA 132

Query: 123 INESPLDSPKM-WME 136
           INESPLDSP+M WM+
Sbjct: 133 INESPLDSPRMGWMQ 147

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUK8|ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 69/82 (84%), Gaps = 1/82 (1%)

Query: 7   VTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAH 66
           V+KQ  FRGVRMR+WGKWVSEIR+P  K+RIWLG++ TPEMAA A+DVAAL  +G S AH
Sbjct: 34  VSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGS-AH 92

Query: 67  LNFPELADTLPRPASSKPEDVQ 88
           LNFPELA  LPRPAS+ P+D+Q
Sbjct: 93  LNFPELAYHLPRPASADPKDIQ 114

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP3|ERF38_ARATH Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 68/83 (81%), Gaps = 1/83 (1%)

Query: 6   VVTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGA 65
           VV+K   FRGVRMR+WGKWVSEIR+P  K+RIWLG++ T EMAA A+DVAAL  +G S A
Sbjct: 38  VVSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGS-A 96

Query: 66  HLNFPELADTLPRPASSKPEDVQ 88
           HLNFPELA  LPRPAS+ P+D+Q
Sbjct: 97  HLNFPELAYHLPRPASADPKDIQ 119

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score =  117 bits (292), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query: 9   KQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLN 68
           K   +RGVRMR WGKWVSEIR+P  K+RIWLG++ TPEMAA A+DVAAL  +G + A LN
Sbjct: 47  KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG-TAAILN 105

Query: 69  FPELADTLPRPASSKPEDVQLAAQEAA 95
           FPELAD+ PRP S  P D+Q AA +AA
Sbjct: 106 FPELADSFPRPVSLSPRDIQTAALKAA 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2

 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 72/94 (76%), Gaps = 1/94 (1%)

Query: 9   KQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLN 68
           K   +RGVRMR WGKWVSEIR+P  K+RIWLG+Y T EMAA A+DVAAL  +G + A+LN
Sbjct: 96  KHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKG-TTAYLN 154

Query: 69  FPELADTLPRPASSKPEDVQLAAQEAALSFRKPI 102
           FP+LA  LPRP ++ P+D+Q AA  AA++++  +
Sbjct: 155 FPKLAGELPRPVTNSPKDIQAAASLAAVNWQDSV 188

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M080|ERF43_ARATH Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 66/89 (74%), Gaps = 1/89 (1%)

Query: 8   TKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHL 67
            KQ  +RGVRMR WGKWVSEIR+P  K+RIWLG++ T EMA  A+DVAA+  +G S A L
Sbjct: 14  NKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTS-AIL 72

Query: 68  NFPELADTLPRPASSKPEDVQLAAQEAAL 96
           NFPEL+  LPRP S  P DV+ AA +AAL
Sbjct: 73  NFPELSKLLPRPVSLSPRDVRAAATKAAL 101

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU18|ERF36_ARATH Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=2

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 61/80 (76%), Gaps = 1/80 (1%)

Query: 9   KQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLN 68
           +   +RGVRMR WGKWVSEIRQP  KTRIWLG++ T +MAA A+DVAAL  +G S A LN
Sbjct: 57  QHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKG-SSAVLN 115

Query: 69  FPELADTLPRPASSKPEDVQ 88
           FPELA   PRPASS P D+Q
Sbjct: 116 FPELASLFPRPASSSPHDIQ 135

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1

 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query: 9   KQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLN 68
           K   +RGVR R WGKWVSEIR+P  K+RIWLG++ +PEMAA A+DVAAL  +G S A LN
Sbjct: 32  KHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGAS-AILN 90

Query: 69  FPELADTLPRPASSKPEDVQLAAQEAA 95
           FP+LA + PRP+S  P D+Q+AA +AA
Sbjct: 91  FPDLAGSFPRPSSLSPRDIQVAALKAA 117

Putative transcriptional activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M210|ERF35_ARATH Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1

 Score =  109 bits (273), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 62/78 (79%), Gaps = 1/78 (1%)

Query: 11  SAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFP 70
           +++RGVRMR WGKWVSEIR+P  K+RIWLG+Y T EMAA A+DVAAL  +G SG  LNFP
Sbjct: 69  TSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSG-FLNFP 127

Query: 71  ELADTLPRPASSKPEDVQ 88
           EL+  LPRP S  P+D+Q
Sbjct: 128 ELSGLLPRPVSCSPKDIQ 145

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
224145081	185	AP2/ERF domain-containing transcription	0.906	0.843	0.668	1e-48
224136107	180	AP2/ERF domain-containing transcription	0.912	0.872	0.584	1e-47
224073897	189	AP2/ERF domain-containing transcription	0.947	0.862	0.585	2e-47
224136103	188	AP2/ERF domain-containing transcription	0.936	0.856	0.664	4e-47
255588049	190	DNA binding protein, putative [Ricinus c	0.895	0.810	0.629	1e-45
449447759	192	PREDICTED: ethylene-responsive transcrip	0.924	0.828	0.555	2e-43
255587007	215	DNA binding protein, putative [Ricinus c	0.930	0.744	0.520	2e-41
356540377	185	PREDICTED: ethylene-responsive transcrip	0.953	0.886	0.573	8e-41
225460137	182	PREDICTED: ethylene-responsive transcrip	0.947	0.895	0.612	1e-40
357481281	187	Ethylene-responsive transcription factor	0.924	0.850	0.553	5e-40

>gi|224145081|ref|XP_002325520.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222862395|gb|EEE99901.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 128/172 (74%), Gaps = 16/172 (9%)

Query: 13  FRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPEL 72
           +RGVR RKWGKWVSEIR+PG KTRIWLGSYE PEMAAAAYDVAALH RGR GA LNFPE+
Sbjct: 17  YRGVRQRKWGKWVSEIREPGKKTRIWLGSYEMPEMAAAAYDVAALHLRGR-GAQLNFPEM 75

Query: 73  ADTLPRPASSKPEDVQLAAQEAALSFRKPIAENCS------------LGPVRIGLSPSQI 120
            D LP+PASS  EDVQ+AAQEAAL FR+P+   CS            LGPVR+GLSPSQI
Sbjct: 76  VDILPQPASSSAEDVQMAAQEAALMFRRPM--KCSEAVSGDSSVGGGLGPVRVGLSPSQI 133

Query: 121 QAINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESIWD 172
           QAINE+PLDSPKMWMEL AG     E M++ D ID        +MQ +SIWD
Sbjct: 134 QAINEAPLDSPKMWMEL-AGALLLEEPMIMSDDIDVAYRDERGEMQHDSIWD 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136107|ref|XP_002327382.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835752|gb|EEE74187.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/171 (58%), Positives = 126/171 (73%), Gaps = 14/171 (8%)

Query: 11  SAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFP 70
           S++RGVR RKWGKWVSEIR+PG K+RIWLGS+ETPEMAA AYDVAALHFRG   A LNFP
Sbjct: 14  SSYRGVRKRKWGKWVSEIREPGKKSRIWLGSFETPEMAATAYDVAALHFRGYD-AKLNFP 72

Query: 71  ELADTLPRPASSKPEDVQLAAQEAALSFRKPIAE-------NCSLGPVRIGLSPSQIQAI 123
           +L  +LP+PASS  ED+++AA EAA+S R    E       + ++GP+ + LSPSQIQAI
Sbjct: 73  DLVHSLPKPASSDAEDIRIAAHEAAMSLRPSTVESSQGGSSSSNVGPITVRLSPSQIQAI 132

Query: 124 NESPLDSPKMWMELAAGTFWSPEQMLLYDGID--EVCEWGNYDMQVESIWD 172
           NESPLDSPKMWM+++      P++ ++Y  ID  E  EW N   Q +S+WD
Sbjct: 133 NESPLDSPKMWMQMSGIAM--PDESMIYSSIDVGEEEEWDN--KQTDSLWD 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073897|ref|XP_002304195.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222841627|gb|EEE79174.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/181 (58%), Positives = 125/181 (69%), Gaps = 18/181 (9%)

Query: 4   NQVVTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRS 63
           +Q+ T +  +RG+R RKWG WVSEIR+PG KTRIWLGSYE PEMAA AYDVAALH RGR 
Sbjct: 11  DQISTPR--YRGIRQRKWGTWVSEIREPGQKTRIWLGSYEKPEMAAVAYDVAALHLRGR- 67

Query: 64  GAHLNFPELADTLPRPASSKPEDVQLAAQEAALSFRK------------PIAENCSLGPV 111
           GA LNFPE+ D+LPRPASS+ EDVQ AA+EAAL F               I  +   GPV
Sbjct: 68  GAQLNFPEMEDSLPRPASSRAEDVQAAAREAALLFSTGPVKCSDIVSCGSITSDGGFGPV 127

Query: 112 RIGLSPSQIQAINESPLDSPKMWMELAAGTFWSPEQMLLYDGID-EVCEWGNYDMQVESI 170
           R+GLSPSQIQAINE+PLDSPKMW E  A +  + E M + + I     EW   ++Q ESI
Sbjct: 128 RVGLSPSQIQAINEAPLDSPKMWTEYLAESLLTGEPMAMENDIGVGYSEW--EEIQQESI 185

Query: 171 W 171
           W
Sbjct: 186 W 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136103|ref|XP_002327381.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372101|gb|ABQ62982.1| TINY-like protein [Populus trichocarpa] gi|222835751|gb|EEE74186.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 130/176 (73%), Gaps = 15/176 (8%)

Query: 10  QSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNF 69
           Q  +RGVR RKWGKWVSEIR+PG KTRIWLGSYE PEMAAAAYDVAALH RGR GA LNF
Sbjct: 14  QPRYRGVRQRKWGKWVSEIREPGKKTRIWLGSYEMPEMAAAAYDVAALHLRGR-GAQLNF 72

Query: 70  PELADTLPRPASSKPEDVQLAAQEAALSFRKPI-----------AENCSLGPVRIGLSPS 118
           PE+ D+LPRPASS  EDVQ+AAQEAAL FR+PI               SLGPVR+GLSPS
Sbjct: 73  PEMVDSLPRPASSSTEDVQMAAQEAALLFRRPIKCSEGVGGSSSGGGGSLGPVRVGLSPS 132

Query: 119 QIQAINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVC--EWGNYDMQVESIWD 172
           QIQAINE+PLDSPKMWMEL AG     E + + D ID     EWG  + + +SIWD
Sbjct: 133 QIQAINEAPLDSPKMWMEL-AGALLLDEPVAMGDDIDVELSDEWGEMEHEHDSIWD 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588049|ref|XP_002534488.1| DNA binding protein, putative [Ricinus communis] gi|223525205|gb|EEF27895.1| DNA binding protein, putative [Ricinus communis]

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 125/178 (70%), Gaps = 24/178 (13%)

Query: 13  FRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPEL 72
           +RG+R RKWGKWVSEIR+PG KTRIWLGSYE+PEMAAAAYDVAALHFRG  GAHLNFPEL
Sbjct: 18  YRGIRQRKWGKWVSEIREPGKKTRIWLGSYESPEMAAAAYDVAALHFRGH-GAHLNFPEL 76

Query: 73  ADTLPRPASSKPEDVQLAAQEAALSFRKPIAENCS------------------LGPVRIG 114
            D+LPRPASS  EDVQ+AAQEAA+ FR+PI   CS                  L PVRIG
Sbjct: 77  VDSLPRPASSSAEDVQMAAQEAAVRFRRPI--KCSEVGSGGGGGCGGGGSGGGLVPVRIG 134

Query: 115 LSPSQIQAINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESIWD 172
           LSPSQIQAINE+PLDSPKMWMELA     +   +   +  D   E  + D    SIWD
Sbjct: 135 LSPSQIQAINETPLDSPKMWMELAGALLLAEPTVFGDNNDDFEFEETHEDA---SIWD 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447759|ref|XP_004141635.1| PREDICTED: ethylene-responsive transcription factor ERF021-like [Cucumis sativus] gi|449482331|ref|XP_004156249.1| PREDICTED: ethylene-responsive transcription factor ERF021-like [Cucumis sativus]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/180 (55%), Positives = 122/180 (67%), Gaps = 21/180 (11%)

Query: 11  SAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFP 70
           S++RGVR RKWGKWVSEIR+PG KTRIWLGS+ETPEMAA AYDVAA HFRGR  A LNFP
Sbjct: 15  SSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAATAYDVAAYHFRGRD-ARLNFP 73

Query: 71  ELADTLPRPASSKPEDVQLAAQEAALSFR-KPIA---------ENCSLG--PVRIGLSPS 118
            L ++LP P SS P+D++LAA EAAL  R  P+          E  +LG  PV + LSPS
Sbjct: 74  HLVNSLPFPLSSTPDDIRLAAHEAALRVRTTPVVASSDDQLGDETSTLGLAPVTVRLSPS 133

Query: 119 QIQAINESPLDSPKMWMELAAGT------FWSPEQMLLYDGIDEVCEWGNYDMQVESIWD 172
           QIQAINES LDSPKMWM++++ +      F +    + +D  D    W N  M  +S+WD
Sbjct: 134 QIQAINESTLDSPKMWMQMSSESLLMDQEFSNGNVFVDHDMQDYDQMWEN--MHNDSLWD 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587007|ref|XP_002534096.1| DNA binding protein, putative [Ricinus communis] gi|223525855|gb|EEF28287.1| DNA binding protein, putative [Ricinus communis]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/192 (52%), Positives = 123/192 (64%), Gaps = 32/192 (16%)

Query: 3   TNQVVTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGR 62
           +N      S +RGVR RKWGKWVSEIR+PG KTRIWLGS+ETPEMAA AYDVAAL+FRGR
Sbjct: 33  SNHHGGTSSCYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAATAYDVAALYFRGR 92

Query: 63  SGAHLNFPELADTLPRPASSKPEDVQLAAQEAALSFRK-PIAEN---------------- 105
             A LNFP L   LP PAS   +D+++AA EAAL  R  PI E                 
Sbjct: 93  E-AKLNFPHLVHDLPNPASPNADDIRMAAHEAALRLRSLPIPEREGSNGGGGGGSGGSGS 151

Query: 106 --CSLGPVRIGLSPSQIQAINESPLDSPKMWMELAAGTFWSPEQMLLY---DGIDEVCEW 160
               +GP+ + LSP +IQAINESPLDSPKMWM++A       E  +++   DG+D+  EW
Sbjct: 152 SSSVVGPITVRLSPREIQAINESPLDSPKMWMQMATM-----EDSMMFANDDGVDD--EW 204

Query: 161 GNYDMQVESIWD 172
            +  MQ +S+WD
Sbjct: 205 DS--MQNDSLWD 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540377|ref|XP_003538666.1| PREDICTED: ethylene-responsive transcription factor ERF021-like [Glycine max]

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 101/176 (57%), Positives = 122/176 (69%), Gaps = 12/176 (6%)

Query: 6   VVTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGA 65
           V    SA+RGVR RKWGKWVSEIR+PGTKTRIWLGS+ETPEMAAAAYDVAALHFRGR  A
Sbjct: 12  VGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRD-A 70

Query: 66  HLNFPELADTLPRPASSKPEDVQLAAQEAALSFR-KPIAEN-------CSLGPVRIGLSP 117
            LNFPELA TLPRP S+  + +++AA EAAL  R  P A N        S  P+ + LSP
Sbjct: 71  RLNFPELASTLPRPVSNNADHIRMAAHEAALRLRTNPAAPNTVGSAGSVSAAPLTVRLSP 130

Query: 118 SQIQAINESPLDSPKMWMELAAGTFWSPEQMLLYDGID-EVCEWGNYDMQVESIWD 172
           +QIQAIN+SP+DSP+ WM++        + M+  +G   E  EW   DM  +S+WD
Sbjct: 131 TQIQAINDSPMDSPQTWMQMPDTFMMHDQSMMFANGYSFEDNEW--EDMHNDSLWD 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460137|ref|XP_002275871.1| PREDICTED: ethylene-responsive transcription factor ERF021 [Vitis vinifera] gi|147798891|emb|CAN74966.1| hypothetical protein VITISV_038046 [Vitis vinifera] gi|297741013|emb|CBI31325.3| unnamed protein product [Vitis vinifera]

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/173 (61%), Positives = 124/173 (71%), Gaps = 10/173 (5%)

Query: 7   VTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAH 66
           V   S +RGVR R+WGKWVSEIR+PGTKTRIWLGS+ETPEMAA AYD AALHFRG  GA 
Sbjct: 13  VASSSGYRGVRKRRWGKWVSEIREPGTKTRIWLGSFETPEMAAMAYDAAALHFRGH-GAK 71

Query: 67  LNFPELADTLPRPASSKPEDVQLAAQEAALSF-RKP-----IAENCSLGPVRIGLSPSQI 120
           LNFPELA  LPRPASS  E ++LAAQEAAL   R P           LGPVR+GLSPSQI
Sbjct: 72  LNFPELAPNLPRPASSAAEHIRLAAQEAALRLTRAPESAGQSGSGSGLGPVRVGLSPSQI 131

Query: 121 QAINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQV-ESIWD 172
           QAIN+S LDSP+ W ELA   F   E M++   + E+ +W   +++V ES+WD
Sbjct: 132 QAINDSTLDSPRNWTELAQTVFLD-ESMIMSCEL-EISDWDEEEVEVNESLWD 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481281|ref|XP_003610926.1| Ethylene-responsive transcription factor [Medicago truncatula] gi|355512261|gb|AES93884.1| Ethylene-responsive transcription factor [Medicago truncatula]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 121/177 (68%), Gaps = 18/177 (10%)

Query: 13  FRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPEL 72
           +RGVR RKWGKWVSEIR+PGTKTRIWLGS+ETPEMAAAAYDVAALHFRGR  A LNFPEL
Sbjct: 11  YRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRE-ARLNFPEL 69

Query: 73  ADTLPRPASSKPEDVQLAAQEAALSFR------KPIAENCSLG----------PVRIGLS 116
           A+TLPRP S+  + +++AA EAAL  R       P+  N   G          P+R+ LS
Sbjct: 70  ANTLPRPLSNNADHIRMAAHEAALRLRANTNMLAPLDNNSGTGCSASSTDAVAPLRVRLS 129

Query: 117 PSQIQAINESPLDSPKMWMELAAGTFWSPEQMLLYDGID-EVCEWGNYDMQVESIWD 172
           PSQIQAIN+SP+DSP  WM+++       + ML  +G + E  EW +     +S+WD
Sbjct: 130 PSQIQAINDSPMDSPPTWMQMSHPFMMDDQNMLYGNGYEFEENEWEDIQQHSDSLWD 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2012653	184	AT1G33760 [Arabidopsis thalian	0.726	0.679	0.669	1.4e-41
TAIR|locus:2825329	183	AT1G71450 [Arabidopsis thalian	0.883	0.830	0.502	4.4e-36
TAIR|locus:2129111	179	AT4G16750 [Arabidopsis thalian	0.546	0.525	0.656	2.4e-28
TAIR|locus:2058764	194	ERF38 "ERF family protein 38"	0.819	0.726	0.486	5e-28
TAIR|locus:2195985	244	AT1G77200 [Arabidopsis thalian	0.715	0.504	0.516	7.3e-27
TAIR|locus:2103301	256	AT3G60490 [Arabidopsis thalian	0.540	0.363	0.593	5.2e-26
TAIR|locus:2094897	236	AT3G16280 [Arabidopsis thalian	0.476	0.347	0.698	6.6e-26
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.5	0.364	0.643	6.6e-26
TAIR|locus:2043495	225	ESE2 "ethylene and salt induci	0.511	0.391	0.644	2.9e-25
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.540	0.315	0.574	2.9e-25

TAIR|locus:2012653 AT1G33760 [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 89/133 (66%), Positives = 103/133 (77%)

Query:    10 QSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNF 69
             Q ++RG+R RKWGKWVSEIR+PG KTRIWLGSYET EMAAAAYD AALH RGR G +LNF
Sbjct:    17 QLSYRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGR-GTNLNF 75

Query:    70 PELADTLPRPASSKPEDVQLAAQEAALSFR-----KPIAENCSLGPVRIGLSPSQIQAIN 124
             PEL D+ PRP SS  E +Q AAQ+AAL F+     +P  E+   G  R+GLSP QIQAIN
Sbjct:    76 PELVDSFPRPESSSSEHIQAAAQDAALMFKPGRLSEPALES-GQGLSRVGLSPDQIQAIN 134

Query:   125 ESPLDSPKM-WME 136
             ESPLDSP+M WM+
Sbjct:   135 ESPLDSPRMGWMQ 147

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2825329 AT1G71450 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 86/171 (50%), Positives = 109/171 (63%)

Query:    11 SAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFP 70
             SA+RGVR RKWGKWVSEIR+PGTK RIWLGS+ETPEMAA AYDVAA HFRGR  A LNFP
Sbjct:    22 SAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGRE-ARLNFP 80

Query:    71 ELADTLPRPASSKPEDVQLAAQEAAL---------SFRKPIAENCSLGPVRIGLSPSQIQ 121
             ELA +LPRPA S  + +++A  EA L         + +   + + ++ P  + LSP +IQ
Sbjct:    81 ELASSLPRPADSSSDSIRMAVHEATLCRTTEGTESAMQVDSSSSSNVAPTMVRLSPREIQ 140

Query:   122 AINESPLDSPKMWMELAAGTFWSPEQMLLYDGIDEVCEWGNYDMQVESIWD 172
             AINES L SP   M     T+   + M   + + E+  W  Y  Q + +WD
Sbjct:   141 AINESTLGSPTTMMH---STY---DPMEFANDV-EMNAWETY--QSDFLWD 182

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2129111 AT4G16750 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 63/96 (65%), Positives = 77/96 (80%)

Query:     7 VTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAH 66
             V+KQ  FRGVRMR+WGKWVSEIR+P  K+RIWLG++ TPEMAA A+DVAAL  +G S AH
Sbjct:    34 VSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGS-AH 92

Query:    67 LNFPELADTLPRPASSKPEDVQ-LAAQEAALSFRKP 101
             LNFPELA  LPRPAS+ P+D+Q  AA  AA+ ++ P
Sbjct:    93 LNFPELAYHLPRPASADPKDIQEAAAAAAAVDWKAP 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2058764 ERF38 "ERF family protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 72/148 (48%), Positives = 94/148 (63%)

Query:     2 ETNQVVTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRG 61
             +  +VV+K   FRGVRMR+WGKWVSEIR+P  K+RIWLG++ T EMAA A+DVAAL  +G
Sbjct:    34 DDEKVVSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKG 93

Query:    62 RSGAHLNFPELADTLPRPASSKPEDVQLAAQEAALSFRKPI-AENCSLGP---VRIGLSP 117
              S AHLNFPELA  LPRPAS+ P+D+Q AA  AA +    +  E  S  P   V    SP
Sbjct:    94 GS-AHLNFPELAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVETSSPSPSPTVTETSSP 152

Query:   118 SQIQAINESPLDSPKMWMELAAGT--FW 143
             + I   +++  D P + + +      FW
Sbjct:   153 AMIALSDDAFSDLPDLLLNVNHNIDGFW 180

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009834 "secondary cell wall biogenesis" evidence=TAS

TAIR|locus:2195985 AT1G77200 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 64/124 (51%), Positives = 80/124 (64%)

Query:     3 TNQVVTKQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGR 62
             T + V     +RGVRMR WGKWVSEIR+P  K+RIWLG++ TPEMAA A+D AAL  +G 
Sbjct:    33 TKKRVRSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGT 92

Query:    63 SGAHLNFPELADTLPRPASSKPEDVQLAAQEAALSFRKPIAENCSLGPVRIGLSPSQIQA 122
             S A LNFPELA  LPRPASS P DVQ AA  AA     P + +  +      ++P++ Q 
Sbjct:    93 S-AVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSSLVVSDPTTVIAPAETQL 151

Query:   123 INES 126
              + S
Sbjct:   152 SSSS 155

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2103301 AT3G60490 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 57/96 (59%), Positives = 73/96 (76%)

Query:    11 SAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFP 70
             +++RGVRMR WGKWVSEIR+P  K+RIWLG+Y T EMAA A+DVAAL  +G SG  LNFP
Sbjct:    69 TSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSG-FLNFP 127

Query:    71 ELADTLPRPASSKPEDVQLAAQEAA--LSFRKPIAE 104
             EL+  LPRP S  P+D+Q AA +AA   ++ KP+ +
Sbjct:   128 ELSGLLPRPVSCSPKDIQAAATKAAEATTWHKPVID 163

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2094897 AT3G16280 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 58/83 (69%), Positives = 65/83 (78%)

Query:    13 FRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPEL 72
             +RGVRMR WGKWVSEIRQP  KTRIWLG++ T +MAA A+DVAAL  +G S A LNFPEL
Sbjct:    61 YRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKG-SSAVLNFPEL 119

Query:    73 ADTLPRPASSKPEDVQLAAQEAA 95
             A   PRPASS P D+Q AA EAA
Sbjct:   120 ASLFPRPASSSPHDIQTAAAEAA 142

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 56/87 (64%), Positives = 67/87 (77%)

Query:     9 KQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLN 68
             K   +RGVRMR WGKWVSEIR+P  K+RIWLG++ TPEMAA A+DVAAL  +G + A LN
Sbjct:    47 KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG-TAAILN 105

Query:    69 FPELADTLPRPASSKPEDVQLAAQEAA 95
             FPELAD+ PRP S  P D+Q AA +AA
Sbjct:   106 FPELADSFPRPVSLSPRDIQTAALKAA 132

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2043495 ESE2 "ethylene and salt inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 58/90 (64%), Positives = 68/90 (75%)

Query:     8 TKQSA-FRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAH 66
             TK+   +RG RMR WGKWVSEIR+P  K+RIWLG++ T EMAA A+DVAAL  +G S A 
Sbjct:    20 TKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKG-SSAI 78

Query:    67 LNFPELADTLPRPASSKPEDVQLAAQEAAL 96
             LNFPELAD LPRP S   +D+Q AA EAAL
Sbjct:    79 LNFPELADFLPRPVSLSQQDIQAAAAEAAL 108

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 54/94 (57%), Positives = 72/94 (76%)

Query:     9 KQSAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLN 68
             K   +RGVRMR WGKWVSEIR+P  K+RIWLG+Y T EMAA A+DVAAL  +G + A+LN
Sbjct:    96 KHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTT-AYLN 154

Query:    69 FPELADTLPRPASSKPEDVQLAAQEAALSFRKPI 102
             FP+LA  LPRP ++ P+D+Q AA  AA++++  +
Sbjct:   155 FPKLAGELPRPVTNSPKDIQAAASLAAVNWQDSV 188

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9I2	ERF21_ARATH	No assigned EC number	0.4970	0.8837	0.8306	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: DREB53 AP2/ERF domain-containing transcription factor (185 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-31
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-29
pfam00847	53	pfam00847, AP2, AP2 domain	2e-12

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  107 bits (270), Expect = 2e-31
 Identities = 37/60 (61%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 13 FRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPEL 72
          +RGVR R WGKWV+EIR P    R+WLG+++T E AA AYD AA  FRGRS A LNFP  
Sbjct: 2  YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRS-ARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  102 bits (256), Expect = 2e-29
 Identities = 38/62 (61%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 11 SAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFP 70
          S +RGVR R WGKWV+EIR P    RIWLG+++T E AA AYD AAL  RG S A LNFP
Sbjct: 1  SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSS-AVLNFP 59

Query: 71 EL 72
          + 
Sbjct: 60 DS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 58.4 bits (142), Expect = 2e-12
 Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 11 SAFRGVRMRK-WGKWVSEIRQPGT--KTRIWLGSYETPEMAAAAYDVAALHFRG 61
          S ++GVR  K WG+WV+EIR PG   K R  LG++ T E AA A   A L  RG
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.86
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.83
PHA00280	121	putative NHN endonuclease	99.57
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.17

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.86  E-value=6.2e-22  Score=134.55  Aligned_cols=61  Identities=61%  Similarity=1.100  Sum_probs=57.5

Q ss_pred             CceeEEEECCCCcEEEEEeeCCCCeEEeccCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 046901           11 SAFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPEL   72 (172)
Q Consensus        11 S~yrGVr~r~~gKW~AeIr~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~G~~~a~lNFp~s   72 (172)
                      |+|+||+++++|||+|+|+.+..++++|||+|+|+|||+.|||.++++++|. .+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~-~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGS-SAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCC-ccccCCCCC
Confidence            7899999888899999999966699999999999999999999999999998 899999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.83  E-value=1.8e-20  Score=128.93  Aligned_cols=61  Identities=59%  Similarity=1.132  Sum_probs=57.8

Q ss_pred             ceeEEEECCCCcEEEEEeeCCCCeEEeccCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 046901           12 AFRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPELA   73 (172)
Q Consensus        12 ~yrGVr~r~~gKW~AeIr~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~G~~~a~lNFp~s~   73 (172)
                      +|+||+++++|||+|+|+.|.+++++|||+|+|+||||.|||.++++++|. .+.+|||.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~-~a~~Nf~~~~   61 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGR-SARLNFPNSL   61 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCC-ccccCCCCcc
Confidence            599998888899999999999999999999999999999999999999998 8999999754

>PHA00280 putative NHN endonuclease

Probab=99.57  E-value=5.8e-15  Score=114.35  Aligned_cols=62  Identities=15%  Similarity=0.222  Sum_probs=55.3

Q ss_pred             CCCCcCCCCCCceeEEE-ECCCCcEEEEEeeCCCCeEEeccCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 046901            1 METNQVVTKQSAFRGVR-MRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAH   66 (172)
Q Consensus         1 ~n~~~~~~ntS~yrGVr-~r~~gKW~AeIr~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~G~~~a~   66 (172)
                      +|++++++|+|||+||. ..+.|||+|+|+.  +||+++||.|+++|+|+.||+ ++.+|||. +|+
T Consensus        57 ~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGe-Fa~  119 (121)
T PHA00280         57 WNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQ-FAR  119 (121)
T ss_pred             cccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhc-ccc
Confidence            47778889999999996 4557999999999  999999999999999999997 67789998 765

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.17  E-value=6.5e-11  Score=78.38  Aligned_cols=52  Identities=27%  Similarity=0.464  Sum_probs=44.8

Q ss_pred             CceeEEEE-CCCCcEEEEEeeCCC---CeEEeccCCCCHHHHHHHHHHHHHHhCCC
Q 046901           11 SAFRGVRM-RKWGKWVSEIRQPGT---KTRIWLGSYETPEMAAAAYDVAALHFRGR   62 (172)
Q Consensus        11 S~yrGVr~-r~~gKW~AeIr~p~~---~kri~LGtf~t~EeAA~AyD~Aa~~l~G~   62 (172)
                      |+|+||++ ++.++|+|.|+.+..   +++++||.|++++||+++++.++..++|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            78999965 457999999998522   49999999999999999999999999873

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-11
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		4e-11

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 8  TKQSAFRGVRMRKWGKWVSEIRQPGTK-TRIWLGSYETPEMAAAAYDVAALHFRGRSGAH 66
           K   +RGVR R WGK+ +EIR P     R+WLG++ET E AA AYD AA   RG S A 
Sbjct: 1  AKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRG-SRAL 59
Query: 67 LNFP 70
          LNFP
Sbjct: 60 LNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 13 FRGVRMRKWGKWVSEIRQPGTK-TRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFP 70
          +RGVR R WGK+ +EIR P     R+WLG++ET E AA AYD AA   RG S A LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRG-SRALLNFP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
1gcc_A	63	Ethylene responsive element binding factor 1; tran	8e-26

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 92.8 bits (231), Expect = 8e-26
 Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 2/60 (3%)

Query: 13 FRGVRMRKWGKWVSEIRQPGTK-TRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPE 71
          +RGVR R WGK+ +EIR P     R+WLG++ET E AA AYD AA   RG S A LNFP 
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRG-SRALLNFPL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	90.58
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	83.44
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	82.97
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	80.7

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=3.6e-26  Score=157.30  Aligned_cols=60  Identities=55%  Similarity=0.978  Sum_probs=56.9

Q ss_pred             ceeEEEECCCCcEEEEEeeCCC-CeEEeccCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 046901           12 AFRGVRMRKWGKWVSEIRQPGT-KTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPEL   72 (172)
Q Consensus        12 ~yrGVr~r~~gKW~AeIr~p~~-~kri~LGtf~t~EeAA~AyD~Aa~~l~G~~~a~lNFp~s   72 (172)
                      +||||++|++|||+|+|+.|.+ ++++|||||+|+||||+|||.|+++++|. .+++|||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~-~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGS-RALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSS-CCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCc-ccccCCCCc
Confidence            6999998889999999999975 79999999999999999999999999999 899999985

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=90.58  E-value=0.22  Score=35.10  Aligned_cols=27  Identities=19%  Similarity=0.409  Sum_probs=20.8

Q ss_pred             CCCCceeEEE-ECCCCcEEEEEeeCCCCeE
Q 046901            8 TKQSAFRGVR-MRKWGKWVSEIRQPGTKTR   36 (172)
Q Consensus         8 ~ntS~yrGVr-~r~~gKW~AeIr~p~~~kr   36 (172)
                      ..+|+|.||. ..+.+.|+|.-.+  ++++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r   30 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASR   30 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence            4689999995 4456999999999  5544

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=83.44  E-value=0.2  Score=38.82  Aligned_cols=38  Identities=11%  Similarity=0.005  Sum_probs=29.0

Q ss_pred             eeEEEECCCCcEEEEEeeCCCCeEEeccCCCCHHHHHHHHH
Q 046901           13 FRGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYD   53 (172)
Q Consensus        13 yrGVr~r~~gKW~AeIr~p~~~kri~LGtf~t~EeAA~AyD   53 (172)
                      ++||...+.++|.+.|..  . +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            456633333678899988  5 6778999999999999974

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=82.97  E-value=1.3  Score=35.83  Aligned_cols=41  Identities=17%  Similarity=0.157  Sum_probs=30.4

Q ss_pred             eEEEECCCCcEEEEEeeCCCCeEEeccCCCCHHHHHHHHHHHHHH
Q 046901           14 RGVRMRKWGKWVSEIRQPGTKTRIWLGSYETPEMAAAAYDVAALH   58 (172)
Q Consensus        14 rGVr~r~~gKW~AeIr~p~~~kri~LGtf~t~EeAA~AyD~Aa~~   58 (172)
                      .||++++.|.|..+...  +|+++.+|.  |..||..+...+...
T Consensus        14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~   54 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIE   54 (356)
T ss_dssp             TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHH
Confidence            46877777899876654  788899996  888887776654443

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=80.70  E-value=3.9  Score=28.58  Aligned_cols=44  Identities=23%  Similarity=0.360  Sum_probs=32.5

Q ss_pred             EEECCCC--cEEEEEeeCCCCeEEeccCCC--CHHHHHHHHHHHHHHh
Q 046901           16 VRMRKWG--KWVSEIRQPGTKTRIWLGSYE--TPEMAAAAYDVAALHF   59 (172)
Q Consensus        16 Vr~r~~g--KW~AeIr~p~~~kri~LGtf~--t~EeAA~AyD~Aa~~l   59 (172)
                      ++-+++|  .|+-+.+..++.+++-||.|+  |.++|....+.+...+
T Consensus        28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l   75 (88)
T 3jtz_A           28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML   75 (88)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            3445544  499998886666789999997  7888888777766555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-28

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 98.2 bits (245), Expect = 2e-28
 Identities = 33/60 (55%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 13 FRGVRMRKWGKWVSEIRQPGTK-TRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPE 71
          +RGVR R WGK+ +EIR P     R+WLG++ET E AA AYD AA   RG   A LNFP 
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSR-ALLNFPL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=8.3e-26  Score=154.31  Aligned_cols=59  Identities=56%  Similarity=1.009  Sum_probs=55.0

Q ss_pred             ceeEEEECCCCcEEEEEeeCC-CCeEEeccCCCCHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 046901           12 AFRGVRMRKWGKWVSEIRQPG-TKTRIWLGSYETPEMAAAAYDVAALHFRGRSGAHLNFPE   71 (172)
Q Consensus        12 ~yrGVr~r~~gKW~AeIr~p~-~~kri~LGtf~t~EeAA~AyD~Aa~~l~G~~~a~lNFp~   71 (172)
                      .||||++|++|||+|+|++|. ++++||||+|+|+||||+|||+|+++++|. .+.+|||.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~-~a~~NFP~   61 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGS-RALLNFPL   61 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSS-CCCCSSCT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCC-CcccCCCc
Confidence            599999888999999999985 458899999999999999999999999999 89999995