Citrus Sinensis ID: 046913

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
MRMSQYKPAQCFASTQPDTAIIVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKDISG
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHccHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHc
cccccccccHEEccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
mrmsqykpaqcfastqpdtAIIVRRsannqpsiwdhdflhslscnfngesYKKQAEHLQGKVKTMINEVsvtnkpldqLELIDNLQRLGLAYHFETEIENILHNIynnkddkwknenlYATSLEFRLLRqhgynvsqEVFSsfrdknggficndFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQClnsnkddeDLNEQARRALElplhwrmprleaRWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKDISG
mrmsqykpaqcfastqpdTAIIVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNiynnkddkwKNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDLNEQARRAlelplhwrmprLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKDISG
MRMSQYKPAQCFASTQPDTAIIVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKDISG
******************TAIIVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCL***************ALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATY*********
****************************NQPSIWDHDFLHSLSCN****SYK*QAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKDI**
***********FASTQPDTAIIVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKDISG
*********************IVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKDIS*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
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MRMSQYKPAQCFASTQPDTAIIVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKDISG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query261 2.2.26 [Sep-21-2011]
Q8L5K3 606 (R)-limonene synthase 1 O N/A no 0.980 0.422 0.694 2e-95
Q6PWU2 590 (-)-alpha-terpineol synth no no 0.904 0.4 0.563 1e-75
Q93X23 597 Myrcene synthase, chlorop N/A no 0.946 0.413 0.539 4e-74
A7IZZ2 615 (+)-alpha-pinene synthase N/A no 0.946 0.401 0.494 6e-63
B3TPQ7 592 Alpha-terpineol synthase, N/A no 0.946 0.417 0.480 4e-60
Q94G53 582 (-)-beta-pinene synthase, N/A no 0.900 0.403 0.495 4e-60
Q2XSC4 538 Exo-alpha-bergamotene syn N/A no 0.892 0.433 0.489 2e-59
Q8L5K4 600 Gamma-terpinene synthase, N/A no 0.961 0.418 0.479 2e-58
Q5SBP4 541 Alpha-zingiberene synthas N/A no 0.892 0.430 0.504 7e-58
Q6EJ97 608 Isoprene synthase, chloro N/A no 0.977 0.419 0.464 3e-57
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function desciption
 Score =  348 bits (893), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 182/262 (69%), Positives = 216/262 (82%), Gaps = 6/262 (2%)

Query: 3   MSQYKPAQCFASTQPDTAIIVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKV 62
           M++YKP QC  S + D   + RRSAN QPSIWDHDFL SL+ N+  E+YK++AE L+GKV
Sbjct: 32  MAKYKPVQCLISAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDEAYKRRAEELRGKV 91

Query: 63  KTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNN-KDDKWKNENLYAT 121
           K  I +V    +PLDQLELIDNLQRLGLA+ FETEI NIL+NIYNN KD  W+ ENLYAT
Sbjct: 92  KIAIKDVI---EPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKENLYAT 148

Query: 122 SLEFRLLRQHGYNVSQEVFSSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQF 181
           SLEFRLLRQHGY VSQEVF+ F+D  GGFIC+DFKGILSL+EASY SLEGESIMEEAWQF
Sbjct: 149 SLEFRLLRQHGYPVSQEVFNGFKDDQGGFICDDFKGILSLHEASYYSLEGESIMEEAWQF 208

Query: 182 TSKHLKQCLNSNKDDED--LNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQ 239
           TSKHLK+ + S   +ED  + EQA+RALELPLHW++P LEARWFI +YE+++DKNH LL+
Sbjct: 209 TSKHLKEVMISKNMEEDVFVAEQAKRALELPLHWKVPMLEARWFIHIYERREDKNHLLLE 268

Query: 240 LAKLDFNILQATYQEELKDISG 261
           LAK++FN LQA YQEELK+ISG
Sbjct: 269 LAKMEFNTLQAIYQEELKEISG 290

Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 0
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|Q94G53|QH6_ARTAN (-)-beta-pinene synthase,chloroplastic OS=Artemisia annua GN=QH6 PE=1 SV=1 Back     alignment and function description
>sp|Q2XSC4|LABER_LAVAN Exo-alpha-bergamotene synthase OS=Lavandula angustifolia PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function description
>sp|Q5SBP4|AZIS_OCIBA Alpha-zingiberene synthase OS=Ocimum basilicum GN=ZIS PE=1 SV=1 Back     alignment and function description
>sp|Q6EJ97|ISPS_PUEML Isoprene synthase, chloroplastic OS=Pueraria montana var. lobata GN=ISPS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
322424201 607 limonene synthase [Murraya paniculata] 0.996 0.428 0.892 1e-136
21435708 606 (+)-limonene synthase 2 [Citrus limon] 0.980 0.422 0.702 1e-101
49659437 608 d-limonene synthase [Citrus unshiu] 0.980 0.421 0.708 1e-100
49659435 606 d-limonene synthase [Citrus unshiu] 0.977 0.420 0.685 1e-99
209446863 607 limonene synthase [Poncirus trifoliata] 0.961 0.413 0.693 1e-98
41017756 606 RecName: Full=(R)-limonene synthase 1; A 0.980 0.422 0.694 1e-93
394556815 612 geraniol synthase [Citrus jambhiri] 0.980 0.418 0.694 2e-91
313755420 593 (+)-alpha-phellandrene synthase [Vitis v 0.957 0.421 0.573 2e-76
225465911 593 PREDICTED: myrcene synthase, chloroplast 0.957 0.421 0.573 2e-76
147843306 604 hypothetical protein VITISV_017009 [Viti 0.957 0.413 0.573 2e-76
>gi|322424201|gb|ADX01382.1| limonene synthase [Murraya paniculata] Back     alignment and taxonomy information
 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/260 (89%), Positives = 247/260 (95%)

Query: 1   MRMSQYKPAQCFASTQPDTAIIVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQG 60
           MRMS+YKP QC AS QPDTA +V RSAN QPSIWDHDFLHSLS NF GESYKKQ E+L+G
Sbjct: 31  MRMSEYKPTQCLASAQPDTAAVVGRSANYQPSIWDHDFLHSLSGNFAGESYKKQTENLKG 90

Query: 61  KVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNNKDDKWKNENLYA 120
           KVKT+INEVSVTNKPLDQLELIDNLQRLGLAYHFETEI+NILHN+YNNK DKWK ENLYA
Sbjct: 91  KVKTVINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIKNILHNVYNNKYDKWKKENLYA 150

Query: 121 TSLEFRLLRQHGYNVSQEVFSSFRDKNGGFICNDFKGILSLYEASYCSLEGESIMEEAWQ 180
           TSLEFRLLRQHGYNVSQEVFSSF+DKNGGFICNDFKGILSLYEA Y SLEGE+IMEEAWQ
Sbjct: 151 TSLEFRLLRQHGYNVSQEVFSSFKDKNGGFICNDFKGILSLYEALYSSLEGENIMEEAWQ 210

Query: 181 FTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQL 240
           FTSKHLK+CLNSNKDDEDLNEQARRAL+LPLHWR+PRLEARWFIDVYEK+KD+NHALL+L
Sbjct: 211 FTSKHLKECLNSNKDDEDLNEQARRALQLPLHWRLPRLEARWFIDVYEKRKDRNHALLEL 270

Query: 241 AKLDFNILQATYQEELKDIS 260
           AKLDFNILQATYQEELKDIS
Sbjct: 271 AKLDFNILQATYQEELKDIS 290

Source: Murraya paniculata

Species: Murraya paniculata

Genus: Murraya

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|21435708|gb|AAM53946.1|AF514289_1 (+)-limonene synthase 2 [Citrus limon] Back     alignment and taxonomy information
>gi|49659437|dbj|BAD27257.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|49659435|dbj|BAD27256.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|209446863|dbj|BAG74774.1| limonene synthase [Poncirus trifoliata] Back     alignment and taxonomy information
>gi|41017756|sp|Q8L5K3.1|RLC1_CITLI RecName: Full=(R)-limonene synthase 1; AltName: Full=(+)-limonene synthase 1 gi|21435703|gb|AAM53944.1|AF514287_1 (+)-limonene synthase 1 [Citrus limon] gi|152962684|dbj|BAF73932.1| limonene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|394556815|dbj|BAM29049.1| geraniol synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|313755420|gb|ADR74201.1| (+)-alpha-phellandrene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225465911|ref|XP_002267159.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|147843306|emb|CAN82665.1| hypothetical protein VITISV_017009 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query261
UNIPROTKB|J7LQ09 542 J7LQ09 "Trans-alpha-bergamoten 0.892 0.429 0.539 7.1e-61
UNIPROTKB|J7LH11 546 J7LH11 "(+)-epi-alpha-bisabolo 0.892 0.426 0.502 1.9e-60
UNIPROTKB|B3TPQ7 592 B3TPQ7 "Alpha-terpineol syntha 0.946 0.417 0.480 2.5e-56
UNIPROTKB|Q8L5K4 600 Q8L5K4 "Gamma-terpinene syntha 0.965 0.42 0.473 1.4e-55
UNIPROTKB|Q9SPN0 567 QH1 "R-linalool synthase QH1, 0.977 0.449 0.456 5.5e-54
UNIPROTKB|Q50L36 595 ISPS "Isoprene synthase, chlor 0.950 0.416 0.467 3.8e-53
UNIPROTKB|Q8H2B4 606 Q8H2B4 "R-linalool synthase, c 0.923 0.397 0.460 1.3e-52
UNIPROTKB|B5A434 576 B5A434 "(+)-alpha-terpineol sy 0.946 0.428 0.445 4.4e-52
UNIPROTKB|Q8GUE4 603 GerS "Geraniol synthase, chlor 0.954 0.412 0.420 1.9e-51
UNIPROTKB|Q5UB07 580 TPS4 "Tricyclene synthase TPS4 0.931 0.418 0.444 8.3e-51
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 131/243 (53%), Positives = 172/243 (70%)

Query:    24 RRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELID 83
             RRS N + SIWD DFL SL+  +  + Y KQA+ L+ +VK +I E   T + LDQL+LID
Sbjct:     4 RRSGNFKASIWDDDFLQSLTSPYTAKEYLKQADKLKWQVKVIIKE---TKQRLDQLDLID 60

Query:    84 NLQRLGLAYHFETEIENILHNIYNNK-----DDKWKNENLYATSLEFRLLRQHGYNVSQE 138
             N+QRLG+++HF  EI+ +L NIY        D     ++LY+TSL+FRLLRQHGY+VSQ+
Sbjct:    61 NIQRLGISHHFRDEIQRVLQNIYEKMRVECPDRMLMEKDLYSTSLQFRLLRQHGYHVSQD 120

Query:   139 VFSSFRDKNGGF-ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDE 197
             VF SF D  G F   +D KGIL+LYEAS+ S EGE+I+  A  F+++HLKQ L    D  
Sbjct:   121 VFCSFMDGAGNFQAVDDLKGILALYEASFLSREGENILGSARDFSTRHLKQKLEEITDPI 180

Query:   198 DLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELK 257
              L E+ RRALELPLHWR+ +LEA WFI++YE + D N  LLQLAKL+FN++QA YQE+LK
Sbjct:   181 -LAEKIRRALELPLHWRLQKLEAIWFINIYESRFDANLILLQLAKLEFNMVQAQYQEDLK 239

Query:   258 DIS 260
              +S
Sbjct:   240 WLS 242
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA
GO:1901940 "(-)-exo-alpha-bergamotene biosynthetic process" evidence=IDA
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN0 QH1 "R-linalool synthase QH1, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
UNIPROTKB|Q50L36 ISPS "Isoprene synthase, chloroplastic" [Populus alba (taxid:43335)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H2B4 Q8H2B4 "R-linalool synthase, chloroplastic" [Mentha aquatica (taxid:190902)] Back     alignment and assigned GO terms
UNIPROTKB|B5A434 B5A434 "(+)-alpha-terpineol synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
UNIPROTKB|Q5UB07 TPS4 "Tricyclene synthase TPS4, chloroplastic" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030969001
SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (593 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-105
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 6e-72
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 2e-28
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 7e-22
pfam03936 270 pfam03936, Terpene_synth_C, Terpene synthase famil 2e-05
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  315 bits (809), Expect = e-105
 Identities = 121/244 (49%), Positives = 166/244 (68%), Gaps = 7/244 (2%)

Query: 24  RRSANNQPSIWDHDFLHSLSCNFNGES-YKKQAEHLQGKVKTMINEVSVTNKPLDQLELI 82
           R SAN  PS+W  D   SLS +++ E   +++ E L+ +V+ M+ +        ++L LI
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLI 60

Query: 83  DNLQRLGLAYHFETEIENILHNIYNNKDDKWKNE--NLYATSLEFRLLRQHGYNVSQEVF 140
           D LQRLG++YHFE EI+ IL  IY    ++ ++   +LY T+L FRLLRQHGYNVS +VF
Sbjct: 61  DRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVF 120

Query: 141 SSFRDKNGGFIC---NDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKD-D 196
             F+D++G F      D KG+LSLYEAS+ S  GE I++EA  FT+KHL++ L SN   D
Sbjct: 121 KKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIID 180

Query: 197 EDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEEL 256
            DL+ +   ALE+PLH  +PRLEARW+I+ YE++ D N  LL+LAKLDFNILQA +QEEL
Sbjct: 181 PDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEEL 240

Query: 257 KDIS 260
           K +S
Sbjct: 241 KILS 244

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 261
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=3.6e-79  Score=603.57  Aligned_cols=236  Identities=51%  Similarity=0.832  Sum_probs=217.3

Q ss_pred             cCCCCCCCCCCCccccccCCCCCCch-hHHHHHHHHHHHHHHHHhhh--cCCCCcchhHHHHHHHHHhCCccccHHHHHH
Q 046913           24 RRSANNQPSIWDHDFLHSLSCNFNGE-SYKKQAEHLQGKVKTMINEV--SVTNKPLDQLELIDNLQRLGLAYHFETEIEN  100 (261)
Q Consensus        24 R~~a~~~ps~W~~~fl~s~~~~~~~~-~~~~~~~~LkeeVr~ml~~~--~~~~d~~~~L~lID~lqRLGI~yhFe~EI~~  100 (261)
                      ||+++|+||+||+++++++.+++... .+.+++++||++||+||...  .  .|++++|+|||+||||||+|||++||++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~--~~~~~~l~liD~lqrLGi~~hF~~EI~~   78 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYP--VDLFERLWLIDRLQRLGISYHFEDEIKE   78 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccC--CCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence            78999999999997777776655544 78899999999999999763  2  7899999999999999999999999999


Q ss_pred             HHHHHHhcCCCcC--cCCChhHHHHHHHHHHhcCccccccccccccccCCccc---ccchhhHHHHHHhhcCCCCCccHH
Q 046913          101 ILHNIYNNKDDKW--KNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFI---CNDFKGILSLYEASYCSLEGESIM  175 (261)
Q Consensus       101 ~L~~i~~~~~~~~--~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F~---~~Dv~glLsLYeAS~l~~~gE~iL  175 (261)
                      +|++||+.+....  ...|||+|||+|||||||||+||||||++|+|++|+|+   .+|++|||||||||||+++||+||
T Consensus        79 ~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iL  158 (542)
T cd00684          79 ILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDIL  158 (542)
T ss_pred             HHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHH
Confidence            9999998764321  24799999999999999999999999999999999999   589999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccC-CCCchHHHHHHHhccCCccCCchhHHHHhhHHHhhccCcccHHHHHHHHhhhHHHHHHHHH
Q 046913          176 EEAWQFTSKHLKQCLNSN-KDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQE  254 (261)
Q Consensus       176 deA~~Ft~~~L~~~~~~~-~~~~~L~~~V~~aL~~P~h~~~~Rlear~yI~~Y~~~~~~n~~LLeLAklDFN~~Q~~hq~  254 (261)
                      |||+.||++||++++.++ .++++|+++|.+||++|+||++||||||+||+.|+++.++|++||||||+|||+||++||+
T Consensus       159 deA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~  238 (542)
T cd00684         159 DEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQE  238 (542)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHH
Confidence            999999999999998752 3678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhC
Q 046913          255 ELKDISG  261 (261)
Q Consensus       255 EL~~lsr  261 (261)
                      ||++++|
T Consensus       239 El~~~~r  245 (542)
T cd00684         239 ELKILSR  245 (542)
T ss_pred             HHHHHhH
Confidence            9999875

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 8e-55
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 2e-50
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 8e-47
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 2e-46
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 8e-46
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 8e-46
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 9e-46
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-45
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-45
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 1e-45
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 3e-45
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 4e-45
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 4e-45
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 3e-44
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 4e-31
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 2e-27
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 8e-27
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 2e-20
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  210 bits (534), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 118/242 (48%), Positives = 161/242 (66%), Gaps = 7/242 (2%)
Query: 23  VRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELI 82
            RRSA+ +P+ WD+DFL S   + + E YK +A+ L+ +V+  IN      + L  LELI
Sbjct: 14  ARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKA--EFLTLLELI 71
Query: 83  DNLQRLGLAYHFETEIENILHNIYNNKD-DKWKNENLYATSLEFRLLRQHGYNVSQEVFS 141
           DN+QRLGL Y FE++I   L    ++   D     +L+AT+L FRLLRQHG+ VSQE FS
Sbjct: 72  DNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFS 131
Query: 142 SFRDKNGGFICN---DFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNKDDED 198
            F+D+NG F+ N   D K ILSLYEAS+ +LEGE+I++EA  F   HLK+ L+  K  ++
Sbjct: 132 GFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKE-LSEEKIGKE 190
Query: 199 LNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEELKD 258
           L EQ   ALELPLH R  RLEA W I+ Y KK+D N  LL+LA LD+N++Q+ YQ +L++
Sbjct: 191 LAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRE 250
Query: 259 IS 260
            S
Sbjct: 251 TS 252
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query261
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 3e-80
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 2e-79
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 2e-77
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 4e-77
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 8e-77
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 5e-76
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 2e-60
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 3e-54
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 2e-08
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 8e-54
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 2e-50
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
 Score =  250 bits (639), Expect = 3e-80
 Identities = 101/246 (41%), Positives = 152/246 (61%), Gaps = 11/246 (4%)

Query: 23  VRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELI 82
           +RRS N  PS WD +F+ SL  ++  + +  +A  L   VK  + +       + QLELI
Sbjct: 1   MRRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEK---ETDQIRQLELI 57

Query: 83  DNLQRLGLAYHFETEIENILHNIYNN-----KDDKWKNENLYATSLEFRLLRQHGYNVSQ 137
           D+LQR+GL+ HF+ E + IL +IY +          +  +LY+TSL FRLLR+HG+ V+Q
Sbjct: 58  DDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQ 117

Query: 138 EVFSSFRDKNGGFIC---NDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCLNSNK 194
           EVF SF+++ G F     +D +G+L LYEAS+   EGE+ +E A +F +K L++ +N   
Sbjct: 118 EVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGG 177

Query: 195 DDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQE 254
            D DL  +   +L++PLHWR+ R  A  +I+ Y K+ D N  +L+LA LD NI+QA +QE
Sbjct: 178 VDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQE 237

Query: 255 ELKDIS 260
           ELK+  
Sbjct: 238 ELKESF 243
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.95
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=4.4e-82  Score=624.19  Aligned_cols=235  Identities=42%  Similarity=0.714  Sum_probs=212.5

Q ss_pred             cccccCCCCCCCCCCCccccccCCCCCCchhHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHhCCccccHHHHH
Q 046913           20 AIIVRRSANNQPSIWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIE   99 (261)
Q Consensus        20 ~~~~R~~a~~~ps~W~~~fl~s~~~~~~~~~~~~~~~~LkeeVr~ml~~~~~~~d~~~~L~lID~lqRLGI~yhFe~EI~   99 (261)
                      ..+.||+|||+||+|||+||+| ++++..+.+.+++++||++||+||....  .|++++|+|||+||||||+|||++||+
T Consensus        18 ~~~~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~--~~~~~~l~lID~lqrLGi~~hF~~EI~   94 (554)
T 3g4d_A           18 KDEMRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPM--ANSTQKLAFIDSVQRLGVSYHFTKEIE   94 (554)
T ss_dssp             -------CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCC--SSHHHHHHHHHHHHHTTCGGGCHHHHH
T ss_pred             CCCCCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcc--cCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence            4457999999999999999999 6677778899999999999999997532  689999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcCcCCChhHHHHHHHHHHhcCccccccccccccccCCccc---ccchhhHHHHHHhhcCCCCCccHHH
Q 046913          100 NILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNGGFI---CNDFKGILSLYEASYCSLEGESIME  176 (261)
Q Consensus       100 ~~L~~i~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F~---~~Dv~glLsLYeAS~l~~~gE~iLd  176 (261)
                      ++|++||+....  ...|||+|||+|||||||||+||||||++|+|++|+|+   .+|++|||+|||||||++|||+|||
T Consensus        95 ~~L~~i~~~~~~--~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLd  172 (554)
T 3g4d_A           95 DELENIYHNNND--AENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD  172 (554)
T ss_dssp             HHHHHHHHSCCC--TTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             HHHHHHHhccCC--CCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHH
Confidence            999999975211  22699999999999999999999999999999999999   7999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCchHHHHHHHhccCCccCCchhHHHHhhHHHhhccCcccHHHHHHHHhhhHHHHHHHHHHH
Q 046913          177 EAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKDKNHALLQLAKLDFNILQATYQEEL  256 (261)
Q Consensus       177 eA~~Ft~~~L~~~~~~~~~~~~L~~~V~~aL~~P~h~~~~Rlear~yI~~Y~~~~~~n~~LLeLAklDFN~~Q~~hq~EL  256 (261)
                      ||+.||++||++.+..  ++++|+++|.|||++||||+||||||||||+.|++++++|++||||||||||+||++||+||
T Consensus       173 eA~~fs~~~L~~~~~~--~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El  250 (554)
T 3g4d_A          173 EAISFTTHHLSLAVAS--LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKEL  250 (554)
T ss_dssp             HHHHHHHHHHHHHSTT--CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--cCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999999875  78889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhC
Q 046913          257 KDISG  261 (261)
Q Consensus       257 ~~lsr  261 (261)
                      ++++|
T Consensus       251 ~~l~r  255 (554)
T 3g4d_A          251 SEICR  255 (554)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99985
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 261
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 1e-79
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 3e-73
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 7e-09
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 2e-08
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  237 bits (605), Expect = 1e-79
 Identities = 85/210 (40%), Positives = 130/210 (61%), Gaps = 13/210 (6%)

Query: 33  IWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAY 92
           +WD +++ SL+  +  E +  +   L  +V+ ++ E     +P+ QLELI +L+ LGL+ 
Sbjct: 1   LWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKE---KMEPVQQLELIHDLKYLGLSD 57

Query: 93  HFETEIENILHNIYNNKDDKWKNE----NLYATSLEFRLLRQHGYNVSQEVFSSFRDKNG 148
            F+ EI+ IL  IYN       NE    +LY T+L FRLLRQHG+N+SQ+VF+ F+++ G
Sbjct: 58  FFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKG 117

Query: 149 GF----ICNDFKGILSLYEASYCSLEGESIMEEAWQFTSKHLKQCL--NSNKDDEDLNEQ 202
                 +  D KG+L LYEAS+   +GE  +E A +F +K L++ L    N+ DE+L   
Sbjct: 118 IDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLW 177

Query: 203 ARRALELPLHWRMPRLEARWFIDVYEKKKD 232
            R +L+LPLHWR+  +EARWFID Y ++ D
Sbjct: 178 IRHSLDLPLHWRIQSVEARWFIDAYARRPD 207
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query261
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=3.1e-74  Score=504.78  Aligned_cols=197  Identities=42%  Similarity=0.775  Sum_probs=181.2

Q ss_pred             CCCccccccCCCCCCchhHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHhCCccccHHHHHHHHHHHHhcCC--
Q 046913           33 IWDHDFLHSLSCNFNGESYKKQAEHLQGKVKTMINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIENILHNIYNNKD--  110 (261)
Q Consensus        33 ~W~~~fl~s~~~~~~~~~~~~~~~~LkeeVr~ml~~~~~~~d~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~--  110 (261)
                      +|||+||+|+++++.++.|.+|+++||++||+||.++   .+++++|+|||+||||||+|||++||+++|++||+...  
T Consensus         1 iW~~~fl~sl~~~~~~e~~~~r~e~Lkeevr~ml~~~---~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~~   77 (207)
T d1n1ba1           1 LWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEK---MEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCF   77 (207)
T ss_dssp             CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHH
T ss_pred             CCCchHHHhCCCCcccHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchhc
Confidence            7999999999999999999999999999999999877   78999999999999999999999999999999997521  


Q ss_pred             --CcCcCCChhHHHHHHHHHHhcCccccccccccccccCC-ccc---ccchhhHHHHHHhhcCCCCCccHHHHHHHHHHH
Q 046913          111 --DKWKNENLYATSLEFRLLRQHGYNVSQEVFSSFRDKNG-GFI---CNDFKGILSLYEASYCSLEGESIMEEAWQFTSK  184 (261)
Q Consensus       111 --~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G-~F~---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~  184 (261)
                        ......|||+|||+|||||||||+||||||++|+|++| +|+   ++|++|||||||||||+++||+|||+|+.||++
T Consensus        78 ~~~~~~~~DL~~~AL~FRLLRqhGy~VS~dvF~~F~d~~g~~fk~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~  157 (207)
T d1n1ba1          78 HNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATK  157 (207)
T ss_dssp             HHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHcCCCCCHHHHHHhccCCCCchhhhHHHhHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence              11134699999999999999999999999999999999 898   899999999999999999999999999999999


Q ss_pred             HHHHHhccC--CCCchHHHHHHHhccCCccCCchhHHHHhhHHHhhccCc
Q 046913          185 HLKQCLNSN--KDDEDLNEQARRALELPLHWRMPRLEARWFIDVYEKKKD  232 (261)
Q Consensus       185 ~L~~~~~~~--~~~~~L~~~V~~aL~~P~h~~~~Rlear~yI~~Y~~~~~  232 (261)
                      ||++++..+  .++++|+++|.|||++|+||+||||||||||+.|+++++
T Consensus       158 ~L~~~l~~~~~~~~~~l~~~V~~AL~~P~~~~l~rleaR~yI~~Ye~~~d  207 (207)
T d1n1ba1         158 CLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPD  207 (207)
T ss_dssp             HHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTT
T ss_pred             HHHHHHHhcccccchhHHHHHHHHhCCCccCCCcHHHHHHhHHHhCCCCC
Confidence            999998642  368899999999999999999999999999999998763
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure