Citrus Sinensis ID: 046930
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 965 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LVD3 | 971 | Pentatricopeptide repeat- | yes | no | 0.894 | 0.888 | 0.442 | 0.0 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.864 | 0.75 | 0.251 | 3e-68 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.702 | 0.747 | 0.241 | 3e-58 | |
| Q9LER0 | 940 | Pentatricopeptide repeat- | no | no | 0.789 | 0.810 | 0.243 | 2e-57 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.652 | 0.574 | 0.257 | 1e-56 | |
| Q9LN69 | 904 | Putative pentatricopeptid | no | no | 0.698 | 0.745 | 0.258 | 2e-56 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.820 | 0.865 | 0.260 | 5e-55 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.709 | 0.703 | 0.239 | 7e-54 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.511 | 0.661 | 0.281 | 5e-53 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.506 | 0.776 | 0.259 | 1e-52 |
| >sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/976 (44%), Positives = 604/976 (61%), Gaps = 113/976 (11%)
Query: 1 VTKTSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQ 60
++K S ++ DSLI GF I R+DP K LL+L+DCLRNHG PSS TFCSL+Y F +
Sbjct: 88 ISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRDCLRNHGAFPSSLTFCSLIYRFVEK 147
Query: 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV 120
G M A+EVLE+M+++NV YPFDNFVCS+V+SGFCKIGKPELA+GFFE+A+ G L PN+
Sbjct: 148 GEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELALGFFESAVDSGVLVPNL 207
Query: 121 VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------Q 165
V+YT+LV ALC LG+V+EV +L R+E EG +FD VFYS WI G +
Sbjct: 208 VTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDRE 267
Query: 166 MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGK 225
MV+KG+ D VSY+IL+DG SKEG +E+A+G+L KMI++ + PNLITYTAII G CK GK
Sbjct: 268 MVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGK 327
Query: 226 LEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNT 285
LEEAF +F ++ +G+ DEF+Y TLIDG+CR+G+L+ AF +L DME++GI+PSI+TYNT
Sbjct: 328 LEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNT 387
Query: 286 IINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDI 345
+INGLC GR S+A+EVSKG++GDV+TYSTLL YI+ N++ +LE ++R EA I MD+
Sbjct: 388 VINGLCMAGRVSEADEVSKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDL 447
Query: 346 VMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDE 405
VMCNIL+KA ++GA +A ALY+AMPEM+L ++ TY+TMI GYCK G+IEEALE+F+E
Sbjct: 448 VMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNE 507
Query: 406 LRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGV 465
LR+ S+S+ CYN II+ LCK GM+D ATEV IEL EKGL L + + +L + A GG
Sbjct: 508 LRKSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGD 567
Query: 466 GGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSI 525
G+L VY +E L S++ + ND I LCKRGS E A E+YM MR++G VT S +I
Sbjct: 568 KGILGLVYGLEQLNSDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFPS--TI 625
Query: 526 LKGL-DNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISS 584
LK L DN + L YL + + L +M I
Sbjct: 626 LKTLVDN-------------------------LRSLDAYLLVVNAGETTL--SSMDVIDY 658
Query: 585 TVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLC 644
T+ ++ L K G ++ L A+ ++ + Y++++ LC++G + +AL L
Sbjct: 659 TI-----IINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLF 713
Query: 645 AFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKE 704
+N G+ + VTY +I +LC++G F++A +L DS+ +VP+ + Y +++ CK
Sbjct: 714 DSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKL 773
Query: 705 GQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTV 764
GQ DA ++ R ++ P +S I GYCK G +EEA + K + D F
Sbjct: 774 GQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGF 833
Query: 765 SAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824
+I GFC KG RMEEAR +LREML
Sbjct: 834 LFLIKGFCTKG-----------------------------------RMEEARGLLREMLV 858
Query: 825 SKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAI 883
S+SV++LINRVD E+ ESES+ FL+ LCEQG + +AI ILDEI ++P+ +
Sbjct: 859 SESVVKLINRVDAELAESESIRGFLVELCEQGRVPQAIKILDEISSTIYPSGK------- 911
Query: 884 ETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVASFCS 943
++ S Q +DV N ++K HDF+ +S V+S C+
Sbjct: 912 ----------------NLGSYQRLQFLNDV----NEEEIKKKDYVHDFHSLHSTVSSLCT 951
Query: 944 KGELQKANKLMKEMLS 959
G+L++AN+ + +LS
Sbjct: 952 SGKLEQANEFVMSVLS 967
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 234/929 (25%), Positives = 419/929 (45%), Gaps = 95/929 (10%)
Query: 38 LRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKI 97
+R G + +++++ L++ + A+EV M E + + SS++ G K
Sbjct: 179 MREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTY--SSLMVGLGKR 236
Query: 98 GKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVF 157
+ +G + +LG LKPNV ++T + L G++NE E+ RM+ EG DVV
Sbjct: 237 RDIDSVMGLLKEMETLG-LKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVT 295
Query: 158 YSCWI--------------------------------------------------CGQMV 167
Y+ I +M
Sbjct: 296 YTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEME 355
Query: 168 DKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLE 227
G PD V++TIL+D K G +A L+ M + + PNL TY +I G + +L+
Sbjct: 356 KDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLD 415
Query: 228 EAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTII 287
+A +F +E LG+ + Y ID + GD A E M+ KGI P+IV N +
Sbjct: 416 DALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 475
Query: 288 NGLCKVGRTSDAEEV-----SKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQ 342
L K GR +A+++ G++ D VTY+ ++ Y + ++ ++ + E G +
Sbjct: 476 YSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCE 535
Query: 343 MDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEI 402
D+++ N LI L+ +++A ++ M EM L VTY+T++ G K G+I+EA+E+
Sbjct: 536 PDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIEL 595
Query: 403 FDEL-RRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFA 461
F+ + ++ + +N + + LCK+ V +A ++ ++ + G V + I+
Sbjct: 596 FEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVK 655
Query: 462 KGGVGGVLNFVYRIENLRSEIYDIICN----DVISFLCKRGSSEVASELYMFMRKRGSVV 517
G V + F ++++ L + +C V + L + + + LY + ++
Sbjct: 656 NGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLF 715
Query: 518 TDQSYYSIL--KGLDNEGKKWLIGPLLSMFVKENGLVEPMISKF--LVQYLC-LNDVTNA 572
+ SIL G+DN S + NG+ S +++Y C N+V+ A
Sbjct: 716 WEDLIGSILAEAGIDNAVS-------FSERLVANGICRDGDSILVPIIRYSCKHNNVSGA 768
Query: 573 -LLFIKNMKEISSTVTIPV-NVLKKLLKAGSVLDVYKLVMGAEDSLPCM-DVVDYSTIVA 629
LF K K++ +P N+L L ++++ + V S C+ DV Y+ ++
Sbjct: 769 RTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLD 828
Query: 630 ALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRL-FDSLERIDMV 688
A + G +++ +L N +T+N VI L + G +A L +D + D
Sbjct: 829 AYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS 888
Query: 689 PSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKF 748
P+ +Y LI L K G+L +AK+LF+ M+ G +P+ IYN I+G+ K G+ + A
Sbjct: 889 PTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACAL 948
Query: 749 LHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCT 808
+ + PD T S +++ C G ++ L +F + G++PD + + ++ GL
Sbjct: 949 FKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGK 1008
Query: 809 KGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIG 868
R+EEA + EM S+ + D+ + +LN I+ G + EA I +EI
Sbjct: 1009 SHRLEEALVLFNEMKTSRGITP-----DLYTYNSLILNLGIA----GMVEEAGKIYNEI- 1058
Query: 869 YMLFPTQRFGTDRAIETQNKLDECESLNA 897
QR G + + T N L SL+
Sbjct: 1059 ------QRAGLEPNVFTFNALIRGYSLSG 1081
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Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 181/751 (24%), Positives = 348/751 (46%), Gaps = 73/751 (9%)
Query: 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRME 147
S+++ G K LA+ F + +S+G ++P+V YT ++ +LC L ++ E+ ME
Sbjct: 196 SALLHGLVKFRHFGLAMELFNDMVSVG-IRPDVYIYTGVIRSLCELKDLSRAKEMIAHME 254
Query: 148 SEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR 207
+ G ++V Y +L+DG K+ + +AVGI + L+
Sbjct: 255 ATGCDVNIV--------------------PYNVLIDGLCKKQKVWEAVGIKKDLAGKDLK 294
Query: 208 PNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRL 267
P+++TY +++G CK + E + ++ L E ++L++G+ +RG ++ A L
Sbjct: 295 PDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNL 354
Query: 268 LEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAE----EVSK-GILGDVVTYSTLLHGYIE 322
++ + G+ P++ YN +I+ LCK + +AE + K G+ + VTYS L+ +
Sbjct: 355 VKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCR 414
Query: 323 EDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVT 382
++ L + + G+++ + N LI G + A M L VT
Sbjct: 415 RGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVT 474
Query: 383 YSTMIDGYCKLGRIEEALEIFDELRRMSIS-SVACYNCIINGLCKSGMVDMATEVFIELN 441
Y++++ GYC G+I +AL ++ E+ I+ S+ + +++GL ++G++ A ++F E+
Sbjct: 475 YTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMA 534
Query: 442 EKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRI--ENLRSEIYDIICNDVISFLCKRGS 499
E + + ++++ +G + F+ + + + + Y +I LC G
Sbjct: 535 EWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSY--RPLIHGLCLTGQ 592
Query: 500 SEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKF 559
+ A + K + + Y +L G EGK + LS+ + +V+ +
Sbjct: 593 ASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK---LEEALSVCQE---MVQRGVDLD 646
Query: 560 LVQYLCLNDVT----NALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDS 615
LV Y L D + + LF +KE+ P +V+
Sbjct: 647 LVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVI---------------------- 684
Query: 616 LPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEA 675
Y++++ A + G +A + N+G N VTY VI+ LC+ G EA
Sbjct: 685 --------YTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEA 736
Query: 676 FRLFDSLERIDMVPSEVSYATLIYNLCK-EGQLLDAKKLFDRMVLKGFKPSTRIYNSFID 734
L ++ + VP++V+Y + L K E + A +L + +LKG +T YN I
Sbjct: 737 EVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHN-AILKGLLANTATYNMLIR 795
Query: 735 GYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP 794
G+C+ G++EEA + + + + + PD T + +IN C++ D++ A+ + KG+ P
Sbjct: 796 GFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRP 855
Query: 795 DFLGFLYLVKGLCTKGRMEEARSILREMLQS 825
D + + L+ G C G M +A + EML+
Sbjct: 856 DRVAYNTLIHGCCVAGEMGKATELRNEMLRQ 886
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 209/858 (24%), Positives = 380/858 (44%), Gaps = 96/858 (11%)
Query: 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEV 69
SR ++SLI F + ++ L+ + G P F L++SFC G +S A+ +
Sbjct: 95 SRLWNSLIHQFNVNGLVHDQVSLIYSKMIAC-GVSPDVFALNVLIHSFCKVGRLSFAISL 153
Query: 70 LELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129
L N D ++V+SG C+ G + A F + +G L P+ VSY +L+
Sbjct: 154 LR-----NRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGIL-PDTVSYNTLIDG 207
Query: 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCW--------ICGQMVDKGIKPDTVSYTIL 181
C +G L + L + S + MV G PD V+++ +
Sbjct: 208 FCKVGNFVRAKALVDEISELNLITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSI 267
Query: 182 LDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGL 241
++ K G + + +L +M E + PN +TYT ++ K A ++ ++ G+
Sbjct: 268 INRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGI 327
Query: 242 VADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEE 301
D VY L+DG+ + GDL A + + + + P++VTY +++GLCK G S AE
Sbjct: 328 PVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEF 387
Query: 302 V-----SKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALF 356
+ K ++ +VVTYS++++GY+++
Sbjct: 388 IITQMLEKSVIPNVVTYSSMINGYVKK--------------------------------- 414
Query: 357 MVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSIS-SVA 415
G LE+A +L + M + N+V N TY T+IDG K G+ E A+E+ E+R + + +
Sbjct: 415 --GMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNY 472
Query: 416 CYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRI 475
+ ++N L + G + + ++ KG++L ++ L F KGG
Sbjct: 473 ILDALVNHLKRIGRIKEVKGLVKDMVSKGVTL-DQINYTSLIDVFFKGGDEEAALAWAEE 531
Query: 476 ENLRSEIYDIIC-NDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSIL-----KGL 529
R +D++ N +IS + K G A Y MR++G + D + ++I+ K
Sbjct: 532 MQERGMPWDVVSYNVLISGMLKFGKVG-ADWAYKGMREKG-IEPDIATFNIMMNSQRKQG 589
Query: 530 DNEGKKWLIGPLLSMF--VKENGLVEPMIS-KFLVQYLCLNDVTNALLFIKN---MKEIS 583
D+EG +L ++ +K G+ ++S +V LC N + I N + EI
Sbjct: 590 DSEG-------ILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIH 642
Query: 584 STVT---IPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKA 640
+T I ++ K +A ++ ++ ++ L Y+T++A LC+ G KA
Sbjct: 643 PNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSRQV---YNTLIATLCKLGMTKKA 699
Query: 641 LDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYN 700
+ + +G + VT+N+++H +A + + + P+ +Y T+I
Sbjct: 700 AMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRG 759
Query: 701 LCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD 760
L G + + K M +G +P YN+ I G K G ++ + ++ + L P
Sbjct: 760 LSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPK 819
Query: 761 KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKG---LCTKGRME---- 813
T + +I+ F G M A + +GVSP+ + ++ G LCT +E
Sbjct: 820 TSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCTHPDVEWNKK 879
Query: 814 -----EARSILREMLQSK 826
EA+ +L+EM++ K
Sbjct: 880 AMYLAEAKGLLKEMVEEK 897
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 174/676 (25%), Positives = 299/676 (44%), Gaps = 46/676 (6%)
Query: 159 SCW-ICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAII 217
S W +M+ + I PD ++ IL++ EG+ EK+ ++ KM + P ++TY ++
Sbjct: 176 SVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVL 235
Query: 218 FGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIK 277
+CKKG+ + A + ++ G+ AD Y LI +CR + + LL DM K+ I
Sbjct: 236 HWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIH 295
Query: 278 PSIVTYNTIINGLCKVGRTSDA-----EEVSKGILGDVVTYSTLLHGYIEEDNVNGILET 332
P+ VTYNT+ING G+ A E +S G+ + VT++ L+ G+I E N L+
Sbjct: 296 PNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKM 355
Query: 333 KQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCK 392
+E G+ V +L+ L + AR Y M + +TY+ MIDG CK
Sbjct: 356 FYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415
Query: 393 LGRIEEALEIFDELRRMSI-SSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGM 451
G ++EA+ + +E+ + I + Y+ +ING CK G A E+ + GLS +
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 475
Query: 452 HKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIIC-NDVISFLCKRGSSEVASELYMFM 510
+ ++ G + + +Y L D N +++ LCK G A E M
Sbjct: 476 YSTLIYNCCRMGCLKEAIR-IYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCM 534
Query: 511 RKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVT 570
G + S+ ++ G N G+ GL
Sbjct: 535 TSDGILPNTVSFDCLINGYGNSGE---------------GL------------------- 560
Query: 571 NALLFIKNMKEISSTVTIPV--NVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIV 628
A M ++ T ++LK L K G + + K + +D V Y+T++
Sbjct: 561 KAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLL 620
Query: 629 AALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLE-RIDM 687
A+C+ G + KA+ L + I + TY ++I LCR+G V A E R ++
Sbjct: 621 TAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNV 680
Query: 688 VPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFK 747
+P++V Y + + K GQ ++M G P N+ IDGY + G++E+
Sbjct: 681 LPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTND 740
Query: 748 FLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLC 807
L ++ P+ T + +++G+ ++ D+ + + G+ PD L LV G+C
Sbjct: 741 LLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC 800
Query: 808 TKGRMEEARSILREML 823
+E IL+ +
Sbjct: 801 ESNMLEIGLKILKAFI 816
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 202/782 (25%), Positives = 341/782 (43%), Gaps = 108/782 (13%)
Query: 36 DCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC 95
D + N+G +PS + SL+ + +G A+ V + M V P D F CS VV+ +C
Sbjct: 179 DNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQMISFEVS-P-DVFTCSIVVNAYC 236
Query: 96 KIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155
+ G + A+ F + S L+ NVV+Y SL+ M+G V + + M G+ +V
Sbjct: 237 RSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNV 296
Query: 156 VFYSCWICGQ---------------MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNK 200
V Y+ I G + +K + D Y +L+DG+ + G I AV + +
Sbjct: 297 VTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDN 356
Query: 201 MIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGD 260
MIE +R N ++I G+CK G+L EA +F ++ D L D Y TL+DG CR G
Sbjct: 357 MIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGY 416
Query: 261 LDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGY 320
+D A +L + M +K + P+++TYN ++ G ++G D + K +L
Sbjct: 417 VDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMML------------- 463
Query: 321 IEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANS 380
+ G+ D + C+ L++ALF +G +A L++ + L+ ++
Sbjct: 464 -----------------KRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDT 506
Query: 381 VTYSTMIDGYCKLGRIEEALEIFDELRRMSI-SSVACYNCIINGLCKSGMVDMATEVFIE 439
+T + MI G CK+ ++ EA EI D + +V Y + +G K G + A V
Sbjct: 507 ITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEY 566
Query: 440 LNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGS 499
+ KG+ + M+ ++ F YR N
Sbjct: 567 MERKGIFPTIEMYNTLISGAFK-----------YRHLN---------------------- 593
Query: 500 SEVASELYMFMRKRGSVVTDQSYYSILKGLDNEG---KKWLIGPLLSMFVKENGLVEPMI 556
++L + +R RG T +Y +++ G N G K + M K L +
Sbjct: 594 --KVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAY--ATCFEMIEKGITLNVNIC 649
Query: 557 SKFLVQYLCLNDVTNALLFIKNMKEISSTVTIP-VNVLKKLLKAGSV--LDVYKLVMGAE 613
SK L+ + A L ++ K + + +P LK+ L+A + L K+ E
Sbjct: 650 SKIANSLFRLDKIDEACLLLQ--KIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVE 707
Query: 614 DSLPCMDVVD----YSTIVAALCREGYVNKALDLCA-FAKNKGITVNIVTYNTVIHSLCR 668
+S P +V Y+ +A LC+ G + A L + + + TY +IH
Sbjct: 708 NSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAI 767
Query: 669 QGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRI 728
G +AF L D + ++P+ V+Y LI LCK G + A++L ++ KG P+
Sbjct: 768 AGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAIT 827
Query: 729 YNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFN 788
YN+ IDG K G + EA + +K ++ G ++GD++ LD
Sbjct: 828 YNTLIDGLVKSGNVAEAMRL----------KEKMIEKGLVRGSDKQGDVDIPKEVVLDPE 877
Query: 789 TK 790
K
Sbjct: 878 VK 879
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 220/844 (26%), Positives = 366/844 (43%), Gaps = 52/844 (6%)
Query: 30 ALLVLKDCLRNHGTLPSSFT---FCS---LVYSFCSQ--GNMSRAVEVLELMSDEN---- 77
A VLK T+PS T FCS L+ + + +MS +L ++S N
Sbjct: 19 AFEVLKKKFSTDVTVPSPVTRRQFCSVSPLLRNLPEEESDSMSVPHRLLSILSKPNWHKS 78
Query: 78 --VKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR 135
+K S V S F P+ A+ F K +V SY SL+ L G
Sbjct: 79 PSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGY 138
Query: 136 VNEVNELFVRMESEGLKFDVVFYSCWICGQM-----VDKGIKPDTVSYTILLDGFSKEGT 190
V V ++ + M Y +C +M + K Y LL+ ++ G
Sbjct: 139 VGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGL 198
Query: 191 IEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYAT 250
+++ + +M+ED++ PN+ TY ++ G+CK G +EEA K+ + GL D F Y +
Sbjct: 199 VDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTS 258
Query: 251 LIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGD- 309
LI G C+R DLD AF++ +M KG + + V Y +I+GLC R +A ++ + D
Sbjct: 259 LIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDE 318
Query: 310 ----VVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDAR 365
V TY+ L+ + + L + +EE GI+ +I +LI +L E AR
Sbjct: 319 CFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAR 378
Query: 366 ALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFD--ELRRMSISSVACYNCIING 423
L M E L+ N +TY+ +I+GYCK G IE+A+++ + E R++S + YN +I G
Sbjct: 379 ELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS-PNTRTYNELIKG 437
Query: 424 LCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIY 483
CKS V A V ++ E+ + V + ++ G + + N R +
Sbjct: 438 YCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL-SLMNDRGLVP 495
Query: 484 D-IICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLL 542
D +I LCK E A +L+ + ++G Y +++ G GK +L
Sbjct: 496 DQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLML 555
Query: 543 SMFVKENGLVEPMISKFLVQYLCLN-DVTNALLFIKNMKEI--SSTVTIPVNVLKKLLKA 599
+ +N L + L+ LC + + A L + M +I TV+ ++ +LLK
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKD 615
Query: 600 GSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTY 659
G Y S D Y+T + CREG + A D+ A + G++ ++ TY
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675
Query: 660 NTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYN---------------LCKE 704
+++I G AF + + PS+ ++ +LI + LC
Sbjct: 676 SSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAM 735
Query: 705 GQLLD---AKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFK-FLHDLKINCLEPD 760
+++ +L ++MV P+ + Y I G C+ G L A K F H + + P
Sbjct: 736 SNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPS 795
Query: 761 KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILR 820
+ +A+++ C+ A D G P L+ GL KG E S+ +
Sbjct: 796 ELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQ 855
Query: 821 EMLQ 824
+LQ
Sbjct: 856 NLLQ 859
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (541), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 183/764 (23%), Positives = 335/764 (43%), Gaps = 79/764 (10%)
Query: 96 KIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155
++ P + FF S + + S++ L + LC G + + RM
Sbjct: 73 RVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPVAE 132
Query: 156 VFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTA 215
V+ S C Q G D V + IL DG+ +G IE+AV + + + L P L
Sbjct: 133 VWSSIVRCSQEF-VGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKV 191
Query: 216 IIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDL-------------- 261
++ + +L+ + V+K + + +V D Y LI CR G++
Sbjct: 192 LLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEF 251
Query: 262 -------DCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEV-----SKGILGD 309
D A +L E M KG+ P TY+ +I+GLCK+ R DA+ + S G+ D
Sbjct: 252 RTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLD 311
Query: 310 VVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQ 369
TYS L+ G ++ N + + GI + M + I + G +E A+AL+
Sbjct: 312 NHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFD 371
Query: 370 AMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSIS-SVACYNCIINGLCKSG 428
M L+ + Y+++I+GYC+ + + E+ E+++ +I S Y ++ G+C SG
Sbjct: 372 GMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSG 431
Query: 429 MVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICN 488
+D A + E+ G V ++ +++ TF ++N R
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVVIYTTLIK-TF--------------LQNSR-------FG 469
Query: 489 DVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLD-----NEGKKWLIGPLLS 543
D + L + +A +++ Y S++ GL +E + +L+ +
Sbjct: 470 DAMRVLKEMKEQGIAPDIF-------------CYNSLIIGLSKAKRMDEARSFLVEMV-- 514
Query: 544 MFVKENGLVEPMIS--KFLVQYLCLNDVTNALLFIKNMKE--ISSTVTIPVNVLKKLLKA 599
ENGL + F+ Y+ ++ +A ++K M+E + + ++ + K
Sbjct: 515 ----ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570
Query: 600 GSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTY 659
G V++ D D Y+ ++ L + V+ A ++ + KGI ++ +Y
Sbjct: 571 GKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630
Query: 660 NTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVL 719
+I+ + G +A +FD + + P+ + Y L+ C+ G++ AK+L D M +
Sbjct: 631 GVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690
Query: 720 KGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEG 779
KG P+ Y + IDGYCK G L EAF+ ++K+ L PD F + +++G C+ D+E
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 750
Query: 780 ALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREML 823
A+ F N KG + F L+ + G+ E +L ++
Sbjct: 751 AITIF-GTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLM 793
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 152/540 (28%), Positives = 263/540 (48%), Gaps = 46/540 (8%)
Query: 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC-SSVVSGFCKIGKPELA 103
P+ FT+ L+ FC GN+ A+ + + M K N V ++++ G+CK+ K +
Sbjct: 203 PNVFTYNILIRGFCFAGNIDVALTLFDKME---TKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 104 IGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC 163
+++L L+PN++SY ++ LC GR+ EV+ ++
Sbjct: 260 FKLLR-SMALKGLEPNLISYNVVINGLCREGRMKEVS--------------------FVL 298
Query: 164 GQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKK 223
+M +G D V+Y L+ G+ KEG +A+ + +M+ L P++ITYT++I CK
Sbjct: 299 TEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Query: 224 GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTY 283
G + A ++ GL +E Y TL+DG ++G ++ A+R+L +M G PS+VTY
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Query: 284 NTIINGLCKVGRTSDAEEV-----SKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEE 338
N +ING C G+ DA V KG+ DVV+YST+L G+ +V+ L K+ + E
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE 478
Query: 339 AGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEE 398
GI+ D + + LI+ ++A LY+ M + L + TY+ +I+ YC G +E+
Sbjct: 479 KGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEK 538
Query: 399 ALEIFDEL-RRMSISSVACYNCIINGLCKSGMVDMATEVFIEL-NEKGLSLYVGMHKII- 455
AL++ +E+ + + V Y+ +INGL K A + ++L E+ + V H +I
Sbjct: 539 ALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Query: 456 ------------LQATFAKGGVGGVLNFVYRIENLRSEIYD-IICNDVISFLCKRGSSEV 502
L F G+ + V+ ++ D N +I C+ G
Sbjct: 599 NCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRK 658
Query: 503 ASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQ 562
A LY M K G ++ + +++K L EGK + ++ ++ L E +K LV+
Sbjct: 659 AYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVE 718
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 143/552 (25%), Positives = 272/552 (49%), Gaps = 63/552 (11%)
Query: 9 QSRFFDSLIQGF----CIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMS 64
+SR F S+I+ I + + ++ L + ++N G + +T+ L+ FC + +
Sbjct: 74 KSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLP 133
Query: 65 RAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124
A+ VL M + Y + SS+++G+C + A+ + G +PN V++
Sbjct: 134 LALAVLGKMM--KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG-YQPNTVTFN 190
Query: 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------QMVDK 169
+L+ L + + +E L RM ++G + D+V Y + G +M
Sbjct: 191 TLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG 250
Query: 170 GIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEA 229
++P + Y ++DG K ++ A+ + +M +RPN++TY+++I C G+ +A
Sbjct: 251 KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 310
Query: 230 FTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIING 289
+ + + + D F ++ LID + G L A +L ++M K+ I PSIVTY+++ING
Sbjct: 311 SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING 370
Query: 290 LCKVGRTSDAEE-----VSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMD 344
C R +A++ VSK DVVTY+TL+ G+ + V +E + + + G+ +
Sbjct: 371 FCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 430
Query: 345 IVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFD 404
V NILI+ LF G + A+ +++ M + N +TY+T++DG CK G++E+A+ +F+
Sbjct: 431 TVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFE 490
Query: 405 ELRRMSI-SSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKG 463
L+R + ++ YN +I G+CK+G V+ ++F L+ KG+ V
Sbjct: 491 YLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDV-------------- 536
Query: 464 GVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYY 523
+ N +IS C++GS E A L+ M++ G++ Y
Sbjct: 537 ---------------------VAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYN 575
Query: 524 SILKGLDNEGKK 535
++++ +G +
Sbjct: 576 TLIRARLRDGDR 587
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 965 | ||||||
| 359493285 | 993 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.959 | 0.616 | 0.0 | |
| 147789026 | 993 | hypothetical protein VITISV_012425 [Viti | 0.987 | 0.959 | 0.616 | 0.0 | |
| 356558306 | 1064 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.897 | 0.537 | 0.0 | |
| 449461209 | 1085 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.879 | 0.525 | 0.0 | |
| 449507432 | 1061 | PREDICTED: pentatricopeptide repeat-cont | 0.963 | 0.876 | 0.516 | 0.0 | |
| 357449533 | 1070 | Pentatricopeptide repeat-containing prot | 0.987 | 0.890 | 0.513 | 0.0 | |
| 87162841 | 1053 | Tetratricopeptide-like helical [Medicago | 0.969 | 0.888 | 0.511 | 0.0 | |
| 145334827 | 971 | pentatricopeptide repeat-containing prot | 0.894 | 0.888 | 0.442 | 0.0 | |
| 8777358 | 1012 | salt-inducible protein-like [Arabidopsis | 0.894 | 0.852 | 0.442 | 0.0 | |
| 255554390 | 932 | pentatricopeptide repeat-containing prot | 0.825 | 0.855 | 0.449 | 0.0 |
| >gi|359493285|ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1225 bits (3169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/980 (61%), Positives = 756/980 (77%), Gaps = 27/980 (2%)
Query: 5 SFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMS 64
+F +++R +DSLI+G C+K DPEKALL+L+DCL N G LPSSFTF SL++SF SQG MS
Sbjct: 8 NFLNKNRKWDSLIRGLCVKLKDPEKALLILQDCLTNLGILPSSFTFHSLIHSFTSQGKMS 67
Query: 65 RAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124
RA+EVLELM+ + V+YPF NFV SSV+SGFCKI KP+LA+GFFENA++ L+PN+ + T
Sbjct: 68 RAIEVLELMTHDKVRYPFGNFVSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCT 127
Query: 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------QMVDK 169
+L+ AL LGRV EV++L ME E FDVVFYS WICG +M++K
Sbjct: 128 ALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEK 187
Query: 170 GIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEA 229
GI PDTVSYTIL+DGFS+EG +EKA+G L KM +D L+PNL+TYTAI+ GFCKKGKL+EA
Sbjct: 188 GIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEA 247
Query: 230 FTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIING 289
+T+FK VE+LG+ DEF+Y TLIDG C RGD+DC F LLEDMEK+GI PSIVTYN+IING
Sbjct: 248 YTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIING 307
Query: 290 LCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCN 349
LCK GRTS+A+EVSKGI GD VT+STLLHGYIEE+NV GILETK+RLEE G+ +D+VMCN
Sbjct: 308 LCKAGRTSEADEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCN 367
Query: 350 ILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM 409
+IKAL MVGALEDA A Y+ M M+LVA+SVTY TMI+GYC++ RIEEALEIFDE R+
Sbjct: 368 TIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDEFRKT 427
Query: 410 SISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVL 469
SISSV+CY C+I GLC+ GMVDMA EVFIELNEKGL L G + +++A+F + G GVL
Sbjct: 428 SISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKASFEEQGAEGVL 487
Query: 470 NFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGL 529
FV+RIENL E +D I N I FLCKRG S A E+YM MR++ SVVT +SYYSILKGL
Sbjct: 488 KFVHRIENLGREAFDTISNSAICFLCKRGFSLAACEVYMRMRRKQSVVTSRSYYSILKGL 547
Query: 530 DNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIP 589
++ +K L P L+ F+KE G+ EP +SK LV Y+C+ D AL F+ N++ +S V P
Sbjct: 548 ISDDQKGLGWPFLNTFLKEYGIDEPRVSKVLVPYMCMKDADKALFFLTNIQVNTSAVAFP 607
Query: 590 VNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKN 649
V+VLK L K G +LD YKLV+GAE++LP MD+VDYS ++ LC+EG+++KALDLCAF K
Sbjct: 608 VSVLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKK 667
Query: 650 KGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLD 709
KGI +NI YN+VI+ LCRQGC V+AFRLFDSLE+ID+VPSE++YATLI +LCKEG LLD
Sbjct: 668 KGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLD 727
Query: 710 AKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVIN 769
AK+LF++MV+KGF P+ R+YNS IDGYCKFG +EEA L DLK C++PD+FTVSA+IN
Sbjct: 728 AKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALIN 787
Query: 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVL 829
G+C KGDMEGALGFF +F K + PDFLGF+YLV+GLC KGRMEEAR ILREMLQ++SVL
Sbjct: 788 GYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCAKGRMEEARGILREMLQTRSVL 847
Query: 830 ELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPT-QRFGTDRAIETQNK 888
ELINRVD E+E+ESV +F+ISLCEQGSI EA+ +L+E+G + FP +R E + K
Sbjct: 848 ELINRVDTEIETESVESFIISLCEQGSIQEAVTVLNEVGSIFFPIGRRCRPQNRAEKEEK 907
Query: 889 LDECESLNAVASVASLSNQQTDSDVLGRSN----------YHNVEKISKFHDFNFCYSKV 938
+ E + AV+S S N + D DV G SN Y N EK S+ DF YS +
Sbjct: 908 IYEGVTFGAVSSKHSSLNHKMDLDV-GLSNVKKVEMVVDDYDNSEKGSRVPDFESYYSLI 966
Query: 939 ASFCSKGELQKANKLMKEML 958
AS CS+GEL +AN+ ++ML
Sbjct: 967 ASLCSRGELLEANRKTRQML 986
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147789026|emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1224 bits (3166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/980 (61%), Positives = 755/980 (77%), Gaps = 27/980 (2%)
Query: 5 SFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMS 64
+F +++R +DSLI+G C+K DPEKALL+L+DCL N G LPSSFTF SL++SF SQG MS
Sbjct: 8 NFLNKNRKWDSLIRGLCVKLKDPEKALLILQDCLTNLGILPSSFTFHSLIHSFTSQGKMS 67
Query: 65 RAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124
RA+EVLELM+ + V+YPF NFV SSV+SGFCKI KP+LA+GFFENA++ L+PN+ + T
Sbjct: 68 RAIEVLELMTHDKVRYPFGNFVSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCT 127
Query: 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------QMVDK 169
+L+ AL LGRV EV++L ME E FDVVFYS WICG +M++K
Sbjct: 128 ALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEK 187
Query: 170 GIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEA 229
GI PDTVSYTIL+DGFS+EG +EKA+G L KM +D L+PNL+TYTAI+ GFCKKGKL+EA
Sbjct: 188 GIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEA 247
Query: 230 FTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIING 289
+T+FK VE+LG+ DEF+Y TLIDG C RGD+DC F LLEDMEK+GI PSIVTYN+IING
Sbjct: 248 YTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIING 307
Query: 290 LCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCN 349
LCK GRTS+A+EVSKGI GD VT+STLLHGYIEE+NV GILETK+RLEE G+ +D+VMCN
Sbjct: 308 LCKAGRTSEADEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCN 367
Query: 350 ILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM 409
+IKAL MVGALEDA A Y+ M M+LVA+SVTY TMI+GYC++ RIEEALEIFDE R+
Sbjct: 368 TIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVXRIEEALEIFDEFRKT 427
Query: 410 SISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVL 469
SISSV+CY C+I GLC+ GMVDMA EVFIELNEKGL L G + +++A+F + G GVL
Sbjct: 428 SISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKASFEEQGAEGVL 487
Query: 470 NFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGL 529
FV+RIENL E +D I N I FLCKRG S A E+YM MR++ SVVT +SYYSILKGL
Sbjct: 488 KFVHRIENLGREAFDTISNSAICFLCKRGFSLAACEVYMRMRRKQSVVTSRSYYSILKGL 547
Query: 530 DNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIP 589
++ +K L P L+ F+KE G+ EP +SK LV Y+C+ D AL F+ N++ +S V P
Sbjct: 548 ISDDQKGLGWPFLNTFLKEYGIDEPRVSKVLVPYMCMKDADKALFFLTNIQVNTSAVAFP 607
Query: 590 VNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKN 649
V+VLK L K G +LD YKLV+GAE++LP MD+VDYS ++ LC+EG+++KALDLCAF K
Sbjct: 608 VSVLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKK 667
Query: 650 KGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLD 709
KGI +NI YN+VI+ LCRQGC V+AFRLFDSLE+ID+VPSE++YATLI +LCKEG LLD
Sbjct: 668 KGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLD 727
Query: 710 AKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVIN 769
AK+LF++MV KGF P+ R+YNS IDGYCKFG +EEA L DLK C++PD+FTVSA+IN
Sbjct: 728 AKQLFEKMVXKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALIN 787
Query: 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVL 829
G+C KGDMEGALGFF +F K + PDFLGF+YLV+GLC KGRMEEAR ILREMLQ++SVL
Sbjct: 788 GYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCAKGRMEEARGILREMLQTRSVL 847
Query: 830 ELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPT-QRFGTDRAIETQNK 888
ELINRVD E+E+ESV +F+ISLCEQGSI EA+ +L+E+G + FP +R E + K
Sbjct: 848 ELINRVDTEIETESVESFIISLCEQGSIQEAVTVLNEVGSIFFPIGRRCRPQNRAEKEEK 907
Query: 889 LDECESLNAVASVASLSNQQTDSDVLGRSN----------YHNVEKISKFHDFNFCYSKV 938
+ E + AV+S S N + D DV G SN Y N EK S+ DF YS +
Sbjct: 908 IYEGVTFGAVSSKHSSLNHKMDLDV-GLSNVKKVEMVVDDYDNSEKGSRVPDFESYYSLI 966
Query: 939 ASFCSKGELQKANKLMKEML 958
AS CS+GEL +AN+ ++ML
Sbjct: 967 ASLCSRGELLEANRKTRQML 986
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558306|ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1063 bits (2749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/987 (53%), Positives = 708/987 (71%), Gaps = 32/987 (3%)
Query: 2 TKTSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQG 61
+ T H S +DSLIQG +DPEKAL VL+ C+R+ G LPSS TFC +V+ S+G
Sbjct: 82 SHTHITHSS-MWDSLIQGL----HDPEKALSVLQRCVRDRGVLPSSSTFCLVVHKLSSKG 136
Query: 62 NMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV 121
M RA+EVLELM+ + V+YPFD+FVCSSV+SGFC+IGKPELA+GFF+N G L+PNVV
Sbjct: 137 LMGRAIEVLELMAGDGVRYPFDDFVCSSVISGFCRIGKPELALGFFKNVTDCGGLRPNVV 196
Query: 122 SYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------QM 166
+ T+LV ALC +GRV EV L ME EGL DVV YS W CG +M
Sbjct: 197 TCTALVGALCKMGRVGEVCGLVQWMEREGLGLDVVLYSAWACGYVEERVLGEVFGRMREM 256
Query: 167 VDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKL 226
V+KGI D VSYT+L+DGFSK G +EK+ L KMI++ RPN +TY+AI+ +CKKGK+
Sbjct: 257 VEKGIGHDFVSYTVLVDGFSKLGDVEKSFTFLAKMIKEGHRPNKVTYSAIMSAYCKKGKV 316
Query: 227 EEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTI 286
EEAF VF+ ++DLG+ DE+V+ LIDG R GD D F L ++ME+ GI PS+V YN +
Sbjct: 317 EEAFGVFESMKDLGIDLDEYVFVILIDGFGRIGDFDKVFCLFDEMERSGISPSVVAYNAV 376
Query: 287 INGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIV 346
+NGL K GRTS+A+E+ K + DV+TYSTLLHGY+EE+N+ GIL+TK+RLEE+GI MD+V
Sbjct: 377 MNGLSKHGRTSEADELLKNVAADVITYSTLLHGYMEEENIPGILQTKRRLEESGISMDVV 436
Query: 347 MCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDEL 406
MCN+LI+ALFM+GA ED ALY+ MPEM+L+ NSVTY TMIDGYCK+GRIEEALE+FDE
Sbjct: 437 MCNVLIRALFMMGAFEDVYALYKGMPEMDLIPNSVTYCTMIDGYCKVGRIEEALEVFDEF 496
Query: 407 RRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVG 466
R+ ISS+ACYN IINGLCK+GM +MA E +ELN +GL L +G +++ + F +
Sbjct: 497 RKTLISSLACYNSIINGLCKNGMTEMAIEALLELNHEGLELDIGTFRMLTKTIFEENNTK 556
Query: 467 GVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSIL 526
L+ VYR+E L +IY +CND I LC+RG + A+ ++M M+K+G VT SYYSIL
Sbjct: 557 KALDLVYRMEGLGPDIYSSVCNDSIFLLCQRGLLDDANHMWMMMKKKGLSVTCNSYYSIL 616
Query: 527 KGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTV 586
+G N G + I PLL+ F+K+ GLVEPM+ K L YLCL DV A+ F+ + SSTV
Sbjct: 617 RGHLNNGNREQIYPLLNSFLKDYGLVEPMVQKILACYLCLKDVNGAIRFLGKTMDNSSTV 676
Query: 587 TIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAF 646
T ++LK L+K G LD Y+LV +D+LP M DY+ ++ LC+ GY+NKALDLCAF
Sbjct: 677 TFLTSILKILIKEGRALDAYRLVTETQDNLPVM-YADYAIVIDGLCKGGYLNKALDLCAF 735
Query: 647 AKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQ 706
+ KG+ +NIV YN++I+ LC +G +EAFRL DS+E++++VPSE++YAT+IY LC+EG
Sbjct: 736 VEKKGMNLNIVIYNSIINGLCHEGRLIEAFRLLDSIEKLNLVPSEITYATVIYALCREGF 795
Query: 707 LLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSA 766
LLDA+ +F +MVLKGF+P ++YNS +DG KFGQLE+AF+ L+D++ +EPD T+SA
Sbjct: 796 LLDAEHVFSKMVLKGFQPKVQVYNSLLDGISKFGQLEKAFELLNDMETKYIEPDSLTISA 855
Query: 767 VINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSK 826
VIN +CQKGDM GAL F+ F K +SPDF GFLYL++GLCTKGRMEEARS+LREMLQSK
Sbjct: 856 VINCYCQKGDMHGALEFYYKFKRKDMSPDFFGFLYLIRGLCTKGRMEEARSVLREMLQSK 915
Query: 827 SVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGT-DRAIET 885
+V+ELIN V+ EV++ES+ +FL +LCEQG + EA+ +L+EI +LFP QR T ++
Sbjct: 916 NVVELINIVNKEVDTESISDFLGTLCEQGRVQEAVTVLNEIVCILFPVQRLSTYNQGSLK 975
Query: 886 QNKLDECESLNAVASVASLSNQQ-------TDSDV--LGRSNYHNVEKISKFHDFNFCYS 936
Q K+ E + +S+ S + D DV L N + + S+ H F+F YS
Sbjct: 976 QQKIYEWKDEPKSSSIVPSSCKSGLNLGSCDDKDVRNLSTDNGGYMTR-SQLHGFDFYYS 1034
Query: 937 KVASFCSKGELQKANKLMKEMLSSFKE 963
++A+ C+KGELQKAN+ +KE LS E
Sbjct: 1035 RIAALCAKGELQKANQSVKEFLSDLTE 1061
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461209|ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/979 (52%), Positives = 696/979 (71%), Gaps = 25/979 (2%)
Query: 4 TSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNM 63
+S H++R ++ LI+G C+ + DP KAL VL+DC RNH LPSSFTFC L++ FCS G M
Sbjct: 106 SSIFHRNRLWNLLIRGICVNKEDPGKALWVLQDCFRNHAILPSSFTFCVLIHKFCSLGMM 165
Query: 64 SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123
+AVE+LELMSDENV YPFDNFVCSSV+SGFC IGKPELA+ FFENA +LG LKPN+V+Y
Sbjct: 166 DKAVEILELMSDENVNYPFDNFVCSSVISGFCNIGKPELALKFFENAKTLGNLKPNLVTY 225
Query: 124 TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------QMVD 168
T+++ ALC L RVN+V++L ME E L FDVVFYSCWICG +MV
Sbjct: 226 TAVIGALCKLHRVNQVSDLVCEMEKENLAFDVVFYSCWICGYIAEGMLLDAFKRNREMVQ 285
Query: 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEE 228
KGI+PDT+S TIL+ G SK G +EKA G+L +M + L + +TYT I+ GFCKKGKLEE
Sbjct: 286 KGIRPDTISCTILIYGLSKLGNVEKAFGVLERMRKSGLELSSVTYTVIMLGFCKKGKLEE 345
Query: 229 AFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIIN 288
AF++F+ V+ L + DEF+YATLIDG CR+GD D F LL++ME +G+K SIVTYNT+IN
Sbjct: 346 AFSLFEMVKGLEMEVDEFMYATLIDGCCRKGDFDRVFGLLDEMETRGMKSSIVTYNTVIN 405
Query: 289 GLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMC 348
GLCK GRTS+A+ +SKG+ GDV+TYSTLLHGYI+E N+ GI ETK+RLE+AGI +D++MC
Sbjct: 406 GLCKWGRTSEADRLSKGLHGDVITYSTLLHGYIQEQNITGIFETKRRLEDAGISLDVIMC 465
Query: 349 NILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRR 408
N+LIKALFMVGA EDA LY+ MPE+ L ANSVTY T+I+GYC + RI+EA EIF+E +
Sbjct: 466 NVLIKALFMVGAYEDAYILYKRMPEIGLAANSVTYHTLINGYCNICRIDEAFEIFNEFKL 525
Query: 409 MSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGV 468
S SVA YN II LC+ G + A EVFIELN L+L VG+ K++++ F + G G+
Sbjct: 526 ASCDSVAVYNSIIKALCREGRGEKAFEVFIELNLNVLTLDVGVCKMLIRTIFEEKGAAGL 585
Query: 469 LNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKG 528
+Y +E + ++Y+ CND I FLCKRG SE+ASE Y M + ++ +++Y ++K
Sbjct: 586 CEALYGMEKVEQDVYNNTCNDAIRFLCKRGFSEMASEFYSRMMRTRLLLEKKTFYFLIKA 645
Query: 529 LDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTI 588
L++EGK W+ P+ S F+KE GL +P++ + +V + C L + M+E S +
Sbjct: 646 LNSEGKTWISRPIFSNFLKEYGLFDPIVKQIIVDFEC---TKFTLPTSEKMEESFSRFMV 702
Query: 589 PVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAK 648
P ++ K+L+K D Y LVM ++L DV DYST+V LC+ G +++ALD+C AK
Sbjct: 703 PNSMFKRLVKEKRFFDAYNLVMKRGNNLLLGDVFDYSTLVHGLCKGGQMSEALDICVSAK 762
Query: 649 NKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLL 708
G+ +NI+ YN VI LC Q ++AF+LFDSLER+ ++P+E++Y TLI +LC+EG L
Sbjct: 763 TNGMKLNIICYNIVIKGLCLQSRLIQAFQLFDSLERLGLIPTEITYGTLIDSLCREGYLE 822
Query: 709 DAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVI 768
DA++LF+RM+ KG KP+T IYNS IDGY + GQ+EEAFK LH+L+ PD+F+VS+ I
Sbjct: 823 DARQLFERMIPKGLKPNTHIYNSLIDGYIRIGQIEEAFKLLHELRTGAFNPDEFSVSSAI 882
Query: 769 NGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSV 828
+CQKGDMEGAL FF +F +G+SPDFLGFLYL++GLC KGRMEEAR ILRE +QS+SV
Sbjct: 883 KAYCQKGDMEGALSFFFEFKNEGISPDFLGFLYLIRGLCAKGRMEEARDILRETIQSQSV 942
Query: 829 LELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGT------DRA 882
+ELIN+VD E+E+ES+ + L LCE+G ILEA IL+E+G + F + T
Sbjct: 943 MELINKVDTEIEAESIGSALTHLCEEGRILEAYTILNEVGTIFFSAHQHSTIYNQPRKLH 1002
Query: 883 IETQNKLDECESLNAVASVASLSN-QQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVASF 941
+ + +D S S AS N +D + + N+EK + F DFNF Y+ ++SF
Sbjct: 1003 MNDERSVDIIHSGPKACSYASFPNFGSSDVNTTENMEHENLEKRAHFEDFNFYYTLLSSF 1062
Query: 942 CSKGELQKANKLMKEMLSS 960
CS+G +QKA +L+KE++S+
Sbjct: 1063 CSEGNVQKATQLVKEVISN 1081
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507432|ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1026 bits (2654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/979 (51%), Positives = 690/979 (70%), Gaps = 49/979 (5%)
Query: 4 TSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNM 63
+S H++R ++ LI+G C+ + DP KAL VL+DC RNH LPSSFTFC L++ FCS G M
Sbjct: 106 SSIFHRNRLWNLLIRGICVNKEDPGKALWVLQDCFRNHAILPSSFTFCVLIHKFCSLGMM 165
Query: 64 SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123
+AVE+LELMSDENV YPFDNFVCSSV+SGFC IGKPELA+ FFENA +LG LKPN+V+Y
Sbjct: 166 DKAVEILELMSDENVNYPFDNFVCSSVISGFCNIGKPELALKFFENAKTLGNLKPNLVTY 225
Query: 124 TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------QMVD 168
T+++ ALC L RVN+V++L ME E L FDVVFYSCWICG +MV
Sbjct: 226 TAVIGALCKLHRVNQVSDLVCEMEKENLAFDVVFYSCWICGYIAEGMLLDAFKRNREMVQ 285
Query: 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEE 228
KGI+PDT+S TIL+ G SK G +EKA G+L +M + L + +TYT I+ GFCKKGKLEE
Sbjct: 286 KGIRPDTISCTILIYGLSKLGNVEKAFGVLERMRKSGLELSSVTYTVIMLGFCKKGKLEE 345
Query: 229 AFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIIN 288
AF++F+ V+ L + DEF+YATLIDG CR+GD D F LL++ME +G+K SIVTYNT+IN
Sbjct: 346 AFSLFEMVKGLEMEVDEFMYATLIDGCCRKGDFDRVFGLLDEMETRGMKSSIVTYNTVIN 405
Query: 289 GLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMC 348
GLCK GRTS+A+ +SKG+ GDV+TYSTLLHGYI+E N+ GI ETK+RLE+AGI +D++MC
Sbjct: 406 GLCKWGRTSEADRLSKGLHGDVITYSTLLHGYIQEQNITGIFETKRRLEDAGISLDVIMC 465
Query: 349 NILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRR 408
N+LIKALFMVGA EDA LY+ MPE+ L ANSVTY T+I+GYC + RI+EA EIF+E +
Sbjct: 466 NVLIKALFMVGAYEDAYILYKRMPEIGLAANSVTYHTLINGYCNICRIDEAFEIFNEFKL 525
Query: 409 MSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGV 468
S SVA YN II LC+ G + A EVFIELN L+L VG+ K++++ F + G G+
Sbjct: 526 ASCDSVAVYNSIIKALCREGRGEKAFEVFIELNLNVLTLDVGVCKMLIRTIFEEKGAAGL 585
Query: 469 LNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKG 528
+Y +E + ++Y+ CND I FLCKRG SE+ASE Y M + ++ +++Y ++K
Sbjct: 586 CEALYGMEKVEQDVYNNTCNDAIRFLCKRGFSEMASEFYSRMMRTRLLLEKKTFYFLIKA 645
Query: 529 LDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTI 588
L++EGK W+ P+ S F+KE GL +P++ + +V + C + T+
Sbjct: 646 LNSEGKTWISRPIFSNFLKEYGLFDPIVKQIIVDFEC------------------TKFTL 687
Query: 589 PVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAK 648
P + +K+ ++ S + + G ++L DV DYST+V LC+ G +++ALD+C AK
Sbjct: 688 PTS--EKMEESFS-----RFMRG--NNLLLGDVFDYSTLVHGLCKGGQMSEALDICVSAK 738
Query: 649 NKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLL 708
G+ +NI+ YN VI LC Q ++AF+LFDSLER+ ++P+E++Y TLI +LC+EG L
Sbjct: 739 TNGMKLNIICYNIVIKGLCLQSRLIQAFQLFDSLERLGLIPTEITYGTLIDSLCREGYLE 798
Query: 709 DAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVI 768
DA++LF+RM+ KG KP+T IYNS IDGY + GQ+EEAFK LH+L+ PD+F+VS+ I
Sbjct: 799 DARQLFERMIPKGLKPNTHIYNSLIDGYIRIGQIEEAFKLLHELRTGAFNPDEFSVSSAI 858
Query: 769 NGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSV 828
+CQKGDMEGAL FF +F +G+SPDFLGFLYL++GLC KGRMEEAR ILRE +QS+SV
Sbjct: 859 KAYCQKGDMEGALSFFFEFKNEGISPDFLGFLYLIRGLCAKGRMEEARDILRETIQSQSV 918
Query: 829 LELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGT------DRA 882
+ELIN+VD E+E+ES+ + L LCE+G ILEA IL+E+G + F + T
Sbjct: 919 MELINKVDTEIEAESIGSALTHLCEEGRILEAYTILNEVGTIFFSAHQHSTIYNQPRKLH 978
Query: 883 IETQNKLDECESLNAVASVASLSN-QQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVASF 941
+ + +D S S AS N +D + + N+EK + F DFNF Y+ ++SF
Sbjct: 979 MNDERSVDIIHSGPKACSYASFPNFGSSDVNTTENMEHENLEKRAHFEDFNFYYTLLSSF 1038
Query: 942 CSKGELQKANKLMKEMLSS 960
CS+G +QKA +L+KE++S+
Sbjct: 1039 CSEGNVQKATQLVKEVISN 1057
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357449533|ref|XP_003595043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355484091|gb|AES65294.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2593), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/985 (51%), Positives = 693/985 (70%), Gaps = 32/985 (3%)
Query: 7 PHQS-RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSR 65
PH +D LI G C R +PE+ L VL+ CL + S FC ++ FC+ G++ +
Sbjct: 87 PHTPFGAWDMLIHGLCSTRENPERILSVLRHCLVKNRLFISKIVFCCVIQRFCNVGHVGK 146
Query: 66 AVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125
A+EV+ELM++ YPFD+FVCSSVVS F + GKPEL++ FF+N + +PN+V+YT+
Sbjct: 147 AIEVVELMNEYRKDYPFDDFVCSSVVSAFSRAGKPELSLWFFDNFM---GSRPNLVTYTA 203
Query: 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------QMVDKG 170
+V ALC LGRV+EV L +ME +GL DVV YS W+CG +MV+KG
Sbjct: 204 VVNALCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKG 263
Query: 171 IKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAF 230
I D VSYTIL+DGFSK G +EK+ L KMI++ + PN +TYTAI+ +CKKG++EEAF
Sbjct: 264 ICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAF 323
Query: 231 TVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGL 290
+F +++D+G+ DEFV+ LIDG R GD D F+LL +MEK+GI P++VTYN ++NGL
Sbjct: 324 GLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYNAVVNGL 383
Query: 291 CKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNI 350
K GRT +A+E SK + DVVTYSTLLHGY EEDNV GIL+TK+RLEEAGI MD+VMCN+
Sbjct: 384 SKYGRTQEADEFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNV 443
Query: 351 LIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMS 410
LI+ALFM+ A ED ALY+ MPEM+LV NS+TY TMIDGYCK+G+I EALE+FD+ R+ S
Sbjct: 444 LIRALFMMQAYEDVYALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALEVFDDFRKTS 503
Query: 411 ISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLN 470
ISS ACYN IINGLCK GMV+MA E +EL+ KGL L G H+++++ F + VL+
Sbjct: 504 ISSYACYNSIINGLCKKGMVEMAIEALLELDHKGLMLDTGTHRLLMKTIFKENSSKVVLD 563
Query: 471 FVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLD 530
V R+E+L +IY+ ICND I LCKRG + A +L+M M+K+G VT +SY+S+L+ L
Sbjct: 564 LVCRMESLELDIYNAICNDSIFLLCKRGLLDDAYQLWMAMKKKGLPVTCKSYHSLLRRLL 623
Query: 531 -NEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIP 589
G + I PLL+ F+KE GLVEP + K L QY+CL DV +AL F+ SS VT P
Sbjct: 624 CVVGNREQILPLLNCFLKEYGLVEPKVQKVLAQYICLKDVDSALRFLGKTSYNSSAVTFP 683
Query: 590 VNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKN 649
V++LK L+K G LD YKL+MG +D LP M VDY ++ LC+ GY+NKALDLC +
Sbjct: 684 VSILKVLIKEGRALDAYKLLMGVQDDLPVM-YVDYGVVIHGLCKGGYLNKALDLCTLIEK 742
Query: 650 KGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLD 709
KG+ +NIV YN++I+ LC GC +EAFRLFDSLE+++++ SE++YATLIY LC+EG L D
Sbjct: 743 KGVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQD 802
Query: 710 AKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVIN 769
A+ +F +MVL GF+P T++YNS + K GQLE+AF+ L+D++ ++ D FTVS+VIN
Sbjct: 803 AEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVIN 862
Query: 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVL 829
+CQKGDMEGAL F+ F K +SPDFLGFLY+++GLCTKGRMEE RS+LREMLQSK+V
Sbjct: 863 CYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEETRSVLREMLQSKNVA 922
Query: 830 ELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGT--DRAIETQN 887
E+IN V+ V++ES+ +F+ +LC+QG I EA+ +L+ I FP QR T ++ + +
Sbjct: 923 EMINIVNSRVDTESICDFIAALCDQGRIQEAVKVLNLIASEFFPAQRSSTCNNQGSDKSH 982
Query: 888 KLDECESLNAVASVASLSNQQTDSDVLG------RSNYHNVE---KISKFHDFNFCYSKV 938
K E + + +S + LS ++ D R++ N + K S+ +F+F YS++
Sbjct: 983 KSYESVDIGSKSSTSLLSYCESGLDFESCDTRDKRNHMTNNDSHLKKSRLRNFDFYYSRI 1042
Query: 939 ASFCSKGELQKANKLMKEMLSSFKE 963
A+ C+KG+LQ AN+L K+M+S E
Sbjct: 1043 AALCTKGDLQDANELAKKMVSDMTE 1067
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87162841|gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/985 (51%), Positives = 688/985 (69%), Gaps = 49/985 (4%)
Query: 7 PHQS-RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSR 65
PH +D LI G C R +PE+ L VL+ CLR FC+ G++ +
Sbjct: 87 PHTPFGAWDMLIHGLCSTRENPERILSVLRHCLR-----------------FCNVGHVGK 129
Query: 66 AVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125
A+EV+ELM++ YPFD+FVCSSVVS F + GKPEL++ FF+N + +PN+V+YT+
Sbjct: 130 AIEVVELMNEYRKDYPFDDFVCSSVVSAFSRAGKPELSLWFFDNFM---GSRPNLVTYTA 186
Query: 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------QMVDKG 170
+V ALC LGRV+EV L +ME +GL DVV YS W+CG +MV+KG
Sbjct: 187 VVNALCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKG 246
Query: 171 IKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAF 230
I D VSYTIL+DGFSK G +EK+ L KMI++ + PN +TYTAI+ +CKKG++EEAF
Sbjct: 247 ICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAF 306
Query: 231 TVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGL 290
+F +++D+G+ DEFV+ LIDG R GD D F+LL +MEK+GI P++VTYN ++NGL
Sbjct: 307 GLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYNAVVNGL 366
Query: 291 CKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNI 350
K GRT +A+E SK + DVVTYSTLLHGY EEDNV GIL+TK+RLEEAGI MD+VMCN+
Sbjct: 367 SKYGRTQEADEFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNV 426
Query: 351 LIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMS 410
LI+ALFM+ A ED ALY+ MPEM+LV NS+TY TMIDGYCK+G+I EALE+FD+ R+ S
Sbjct: 427 LIRALFMMQAYEDVYALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALEVFDDFRKTS 486
Query: 411 ISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLN 470
ISS ACYN IINGLCK GMV+MA E +EL+ KGL L G H+++++ F + VL+
Sbjct: 487 ISSYACYNSIINGLCKKGMVEMAIEALLELDHKGLMLDTGTHRLLMKTIFKENSSKVVLD 546
Query: 471 FVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLD 530
V R+E+L +IY+ ICND I LCKRG + A +L+M M+K+G VT +SY+S+L+ L
Sbjct: 547 LVCRMESLELDIYNAICNDSIFLLCKRGLLDDAYQLWMAMKKKGLPVTCKSYHSLLRRLL 606
Query: 531 -NEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIP 589
G + I PLL+ F+KE GLVEP + K L QY+CL DV +AL F+ SS VT P
Sbjct: 607 CVVGNREQILPLLNCFLKEYGLVEPKVQKVLAQYICLKDVDSALRFLGKTSYNSSAVTFP 666
Query: 590 VNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKN 649
V++LK L+K G LD YKL+MG +D LP M VDY ++ LC+ GY+NKALDLC +
Sbjct: 667 VSILKVLIKEGRALDAYKLLMGVQDDLPVM-YVDYGVVIHGLCKGGYLNKALDLCTLIEK 725
Query: 650 KGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLD 709
KG+ +NIV YN++I+ LC GC +EAFRLFDSLE+++++ SE++YATLIY LC+EG L D
Sbjct: 726 KGVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQD 785
Query: 710 AKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVIN 769
A+ +F +MVL GF+P T++YNS + K GQLE+AF+ L+D++ ++ D FTVS+VIN
Sbjct: 786 AEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVIN 845
Query: 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVL 829
+CQKGDMEGAL F+ F K +SPDFLGFLY+++GLCTKGRMEE RS+LREMLQSK+V
Sbjct: 846 CYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEETRSVLREMLQSKNVA 905
Query: 830 ELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGT--DRAIETQN 887
E+IN V+ V++ES+ +F+ +LC+QG I EA+ +L+ I FP QR T ++ + +
Sbjct: 906 EMINIVNSRVDTESICDFIAALCDQGRIQEAVKVLNLIASEFFPAQRSSTCNNQGSDKSH 965
Query: 888 KLDECESLNAVASVASLSNQQTDSDVLG------RSNYHNVE---KISKFHDFNFCYSKV 938
K E + + +S + LS ++ D R++ N + K S+ +F+F YS++
Sbjct: 966 KSYESVDIGSKSSTSLLSYCESGLDFESCDTRDKRNHMTNNDSHLKKSRLRNFDFYYSRI 1025
Query: 939 ASFCSKGELQKANKLMKEMLSSFKE 963
A+ C+KG+LQ AN+L K+M+S E
Sbjct: 1026 AALCTKGDLQDANELAKKMVSDMTE 1050
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145334827|ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g57250, mitochondrial; Flags: Precursor gi|332009488|gb|AED96871.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/976 (44%), Positives = 604/976 (61%), Gaps = 113/976 (11%)
Query: 1 VTKTSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQ 60
++K S ++ DSLI GF I R+DP K LL+L+DCLRNHG PSS TFCSL+Y F +
Sbjct: 88 ISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRDCLRNHGAFPSSLTFCSLIYRFVEK 147
Query: 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV 120
G M A+EVLE+M+++NV YPFDNFVCS+V+SGFCKIGKPELA+GFFE+A+ G L PN+
Sbjct: 148 GEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELALGFFESAVDSGVLVPNL 207
Query: 121 VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------Q 165
V+YT+LV ALC LG+V+EV +L R+E EG +FD VFYS WI G +
Sbjct: 208 VTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDRE 267
Query: 166 MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGK 225
MV+KG+ D VSY+IL+DG SKEG +E+A+G+L KMI++ + PNLITYTAII G CK GK
Sbjct: 268 MVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGK 327
Query: 226 LEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNT 285
LEEAF +F ++ +G+ DEF+Y TLIDG+CR+G+L+ AF +L DME++GI+PSI+TYNT
Sbjct: 328 LEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNT 387
Query: 286 IINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDI 345
+INGLC GR S+A+EVSKG++GDV+TYSTLL YI+ N++ +LE ++R EA I MD+
Sbjct: 388 VINGLCMAGRVSEADEVSKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDL 447
Query: 346 VMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDE 405
VMCNIL+KA ++GA +A ALY+AMPEM+L ++ TY+TMI GYCK G+IEEALE+F+E
Sbjct: 448 VMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNE 507
Query: 406 LRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGV 465
LR+ S+S+ CYN II+ LCK GM+D ATEV IEL EKGL L + + +L + A GG
Sbjct: 508 LRKSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGD 567
Query: 466 GGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSI 525
G+L VY +E L S++ + ND I LCKRGS E A E+YM MR++G VT S +I
Sbjct: 568 KGILGLVYGLEQLNSDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFPS--TI 625
Query: 526 LKGL-DNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISS 584
LK L DN + L YL + + L +M I
Sbjct: 626 LKTLVDN-------------------------LRSLDAYLLVVNAGETTL--SSMDVIDY 658
Query: 585 TVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLC 644
T+ ++ L K G ++ L A+ ++ + Y++++ LC++G + +AL L
Sbjct: 659 TI-----IINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLF 713
Query: 645 AFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKE 704
+N G+ + VTY +I +LC++G F++A +L DS+ +VP+ + Y +++ CK
Sbjct: 714 DSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKL 773
Query: 705 GQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTV 764
GQ DA ++ R ++ P +S I GYCK G +EEA + K + D F
Sbjct: 774 GQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGF 833
Query: 765 SAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824
+I GFC KG RMEEAR +LREML
Sbjct: 834 LFLIKGFCTKG-----------------------------------RMEEARGLLREMLV 858
Query: 825 SKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAI 883
S+SV++LINRVD E+ ESES+ FL+ LCEQG + +AI ILDEI ++P+ +
Sbjct: 859 SESVVKLINRVDAELAESESIRGFLVELCEQGRVPQAIKILDEISSTIYPSGK------- 911
Query: 884 ETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVASFCS 943
++ S Q +DV N ++K HDF+ +S V+S C+
Sbjct: 912 ----------------NLGSYQRLQFLNDV----NEEEIKKKDYVHDFHSLHSTVSSLCT 951
Query: 944 KGELQKANKLMKEMLS 959
G+L++AN+ + +LS
Sbjct: 952 SGKLEQANEFVMSVLS 967
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8777358|dbj|BAA96948.1| salt-inducible protein-like [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/976 (44%), Positives = 604/976 (61%), Gaps = 113/976 (11%)
Query: 1 VTKTSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQ 60
++K S ++ DSLI GF I R+DP K LL+L+DCLRNHG PSS TFCSL+Y F +
Sbjct: 129 ISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRDCLRNHGAFPSSLTFCSLIYRFVEK 188
Query: 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV 120
G M A+EVLE+M+++NV YPFDNFVCS+V+SGFCKIGKPELA+GFFE+A+ G L PN+
Sbjct: 189 GEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELALGFFESAVDSGVLVPNL 248
Query: 121 VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------Q 165
V+YT+LV ALC LG+V+EV +L R+E EG +FD VFYS WI G +
Sbjct: 249 VTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDRE 308
Query: 166 MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGK 225
MV+KG+ D VSY+IL+DG SKEG +E+A+G+L KMI++ + PNLITYTAII G CK GK
Sbjct: 309 MVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGK 368
Query: 226 LEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNT 285
LEEAF +F ++ +G+ DEF+Y TLIDG+CR+G+L+ AF +L DME++GI+PSI+TYNT
Sbjct: 369 LEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNT 428
Query: 286 IINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDI 345
+INGLC GR S+A+EVSKG++GDV+TYSTLL YI+ N++ +LE ++R EA I MD+
Sbjct: 429 VINGLCMAGRVSEADEVSKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDL 488
Query: 346 VMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDE 405
VMCNIL+KA ++GA +A ALY+AMPEM+L ++ TY+TMI GYCK G+IEEALE+F+E
Sbjct: 489 VMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNE 548
Query: 406 LRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGV 465
LR+ S+S+ CYN II+ LCK GM+D ATEV IEL EKGL L + + +L + A GG
Sbjct: 549 LRKSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGD 608
Query: 466 GGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSI 525
G+L VY +E L S++ + ND I LCKRGS E A E+YM MR++G VT S +I
Sbjct: 609 KGILGLVYGLEQLNSDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFPS--TI 666
Query: 526 LKGL-DNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISS 584
LK L DN + L YL + + L +M I
Sbjct: 667 LKTLVDN-------------------------LRSLDAYLLVVNAGETTL--SSMDVIDY 699
Query: 585 TVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLC 644
T+ ++ L K G ++ L A+ ++ + Y++++ LC++G + +AL L
Sbjct: 700 TI-----IINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLF 754
Query: 645 AFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKE 704
+N G+ + VTY +I +LC++G F++A +L DS+ +VP+ + Y +++ CK
Sbjct: 755 DSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKL 814
Query: 705 GQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTV 764
GQ DA ++ R ++ P +S I GYCK G +EEA + K + D F
Sbjct: 815 GQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGF 874
Query: 765 SAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824
+I GFC KG RMEEAR +LREML
Sbjct: 875 LFLIKGFCTKG-----------------------------------RMEEARGLLREMLV 899
Query: 825 SKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAI 883
S+SV++LINRVD E+ ESES+ FL+ LCEQG + +AI ILDEI ++P+ +
Sbjct: 900 SESVVKLINRVDAELAESESIRGFLVELCEQGRVPQAIKILDEISSTIYPSGK------- 952
Query: 884 ETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVASFCS 943
++ S Q +DV N ++K HDF+ +S V+S C+
Sbjct: 953 ----------------NLGSYQRLQFLNDV----NEEEIKKKDYVHDFHSLHSTVSSLCT 992
Query: 944 KGELQKANKLMKEMLS 959
G+L++AN+ + +LS
Sbjct: 993 SGKLEQANEFVMSVLS 1008
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554390|ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223542581|gb|EEF44120.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/974 (44%), Positives = 570/974 (58%), Gaps = 177/974 (18%)
Query: 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVL 70
+F DSLIQ DP KALLVL DCLRN+G LPSSFTFCS+++SF QGNMS A++VL
Sbjct: 111 KFLDSLIQAISTDEKDPNKALLVLHDCLRNYGMLPSSFTFCSVIHSFVLQGNMSGAIQVL 170
Query: 71 ELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130
ELM+DE + YPF NFVCSS+VSGFCK+GKPELA+GFFEN++ LGALKPN+V+YT++V +L
Sbjct: 171 ELMNDEKINYPFCNFVCSSIVSGFCKMGKPELAMGFFENSLKLGALKPNLVTYTAVVSSL 230
Query: 131 CMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------QMVDKGIKPDT 175
CMLGR +EV +L ME EGL FDVVFYSCWICG +MV KGI DT
Sbjct: 231 CMLGRADEVFDLVCEMEEEGLAFDVVFYSCWICGYFRNGVFIEAIRKHKEMVKKGISSDT 290
Query: 176 VSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKK 235
+ YTIL+DGFSKEG++EK+VG L+ M+ + PNL+TYTAII GFC+KGK++EAF +FK
Sbjct: 291 IGYTILIDGFSKEGSVEKSVGFLHHMLANGSEPNLVTYTAIILGFCRKGKIDEAFAIFKL 350
Query: 236 VEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGR 295
VE+LG+ DEF+YA L+DG C +GD D A++L+E+MEKKGI P+IV YN +IN LCK GR
Sbjct: 351 VENLGIKLDEFIYAILVDGFCLKGDFDRAYQLIEEMEKKGITPTIVAYNILINSLCKAGR 410
Query: 296 TSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKAL 355
T DA+EVSK + GD +TYS LLHGYI+E+N GILE +QRLEEA IQMDI+M NI++KAL
Sbjct: 411 TFDADEVSKALQGDKITYSALLHGYIKEENSIGILEVRQRLEEARIQMDIIMFNIILKAL 470
Query: 356 FMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVA 415
F+VGA ED LY M EMNLVANS+TY T+I G+CK+GRI+EALEIFDE R SSVA
Sbjct: 471 FVVGAFEDVLVLYNGMQEMNLVANSITYCTIIGGFCKVGRIDEALEIFDEFRHGLGSSVA 530
Query: 416 CYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRI 475
CYNC+INGLCK+GMVDMA E+F+EL EKGL+L +G+ +++A + GVL+ +YRI
Sbjct: 531 CYNCMINGLCKNGMVDMAAEIFVELIEKGLTLDIGICMTLIKAIVKEKSADGVLDLIYRI 590
Query: 476 ENLRSEIYD-IICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGK 534
+N+ S+ YD + N +S L KR S ASE+YM R+ V+T +SYY I+KGL +GK
Sbjct: 591 QNIGSDKYDSTVWNYAMSLLSKRKFSMAASEVYMVARRNKLVLTSKSYYLIIKGLIGDGK 650
Query: 535 KWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLK 594
WL P+LS F+KE GL+EP DV +AL F MKE ++ VT P
Sbjct: 651 FWLTRPILSSFMKEYGLIEP------------KDVKSALYFFNKMKEDNAFVTFP----- 693
Query: 595 KLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITV 654
EGY+ A L KG
Sbjct: 694 ---------------------------------------EGYLLDAKQLFESMVLKGFKW 714
Query: 655 NIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLF 714
NI YN+ I+ C+ G F EA ++ +E + E S G + A + F
Sbjct: 715 NIRIYNSFINGYCKFGQFEEALKILKIIETECLDLDEFS-----------GDMEGALRFF 763
Query: 715 DRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQK 774
KG P + I G C G++EEA L ++ L+ +V ++N
Sbjct: 764 LEYKQKGISPDFLGFLYLIRGLCGKGRMEEARNILREM----LQSQ--SVMELLN----- 812
Query: 775 GDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINR 834
NT+ + FL LC KG ++EA ++L
Sbjct: 813 -----------KVNTEVETESIESFLLF---LCEKGSIKEAVAVL--------------- 843
Query: 835 VDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKLDECES 894
+EIG + FP Q++ + E +S
Sbjct: 844 ------------------------------NEIGSLFFPVQKWSSP---------SESQS 864
Query: 895 L-NAVASVASLSNQQTD-----SDVLGRSNYHNVEKISKFHDFNFCYSKVASFCSKGELQ 948
L +A S+AS + D SD LG SKF+ F YS +AS CSKGEL
Sbjct: 865 LQSANLSLASCDATEVDEVVETSDDLGE---------SKFNCFASYYSVIASLCSKGELG 915
Query: 949 KANKLMKEMLSSFK 962
+AN+ KE L+S++
Sbjct: 916 EANRFAKEKLASWE 929
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 965 | ||||||
| TAIR|locus:2165585 | 971 | AT5G57250 [Arabidopsis thalian | 0.876 | 0.871 | 0.435 | 4.8e-181 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.850 | 0.738 | 0.260 | 2e-66 | |
| TAIR|locus:2016427 | 904 | AT1G19290 [Arabidopsis thalian | 0.708 | 0.756 | 0.268 | 3.9e-54 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.776 | 0.825 | 0.235 | 5.8e-54 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.729 | 0.769 | 0.261 | 2.4e-52 | |
| TAIR|locus:2827701 | 874 | AT2G17140 [Arabidopsis thalian | 0.687 | 0.758 | 0.247 | 2e-52 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.474 | 0.728 | 0.270 | 4.7e-52 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.489 | 0.749 | 0.272 | 6.6e-51 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.452 | 0.705 | 0.295 | 4.5e-50 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.475 | 0.777 | 0.272 | 1.2e-48 |
| TAIR|locus:2165585 AT5G57250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1757 (623.6 bits), Expect = 4.8e-181, P = 4.8e-181
Identities = 385/885 (43%), Positives = 548/885 (61%)
Query: 1 VTKTS-FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS 59
++K S FP ++ DSLI GF I R+DP K LL+L+DCLRNHG PSS TFCSL+Y F
Sbjct: 88 ISKASIFP-RTHMLDSLIHGFSITRDDPSKGLLILRDCLRNHGAFPSSLTFCSLIYRFVE 146
Query: 60 QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN 119
+G M A+EVLE+M+++NV YPFDNFVCS+V+SGFCKIGKPELA+GFFE+A+ G L PN
Sbjct: 147 KGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELALGFFESAVDSGVLVPN 206
Query: 120 VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG--------------- 164
+V+YT+LV ALC LG+V+EV +L R+E EG +FD VFYS WI G
Sbjct: 207 LVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDR 266
Query: 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKG 224
+MV+KG+ D VSY+IL+DG SKEG +E+A+G+L KMI++ + PNLITYTAII G CK G
Sbjct: 267 EMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMG 326
Query: 225 KLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYN 284
KLEEAF +F ++ +G+ DEF+Y TLIDG+CR+G+L+ AF +L DME++GI+PSI+TYN
Sbjct: 327 KLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYN 386
Query: 285 TIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMD 344
T+INGLC GR S+A+EVSKG++GDV+TYSTLL YI+ N++ +LE ++R EA I MD
Sbjct: 387 TVINGLCMAGRVSEADEVSKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMD 446
Query: 345 IVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFD 404
+VMCNIL+KA ++GA +A ALY+AMPEM+L ++ TY+TMI GYCK G+IEEALE+F+
Sbjct: 447 LVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFN 506
Query: 405 ELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGG 464
ELR+ S+S+ CYN II+ LCK GM+D ATEV IEL EKGL L + + +L + A GG
Sbjct: 507 ELRKSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGG 566
Query: 465 VGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYS 524
G+L VY +E L S++ + ND I LCKRGS E A E+YM MR++G VT S +
Sbjct: 567 DKGILGLVYGLEQLNSDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFPS--T 624
Query: 525 ILKGL-DNEGKKWLIGPLLSMFVKENGLVEPMISKF--LVQYLC----LNDVTNALLFIK 577
ILK L DN + L LL + E L + + ++ LC L N F K
Sbjct: 625 ILKTLVDN--LRSLDAYLLVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNLCSFAK 682
Query: 578 NMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYV 637
+ +T+T +++ L + G +++ +L E+ V Y ++ LC+EG
Sbjct: 683 SRGVTLNTITYN-SLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLF 741
Query: 638 NKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATL 697
A L +KG+ NI+ YN+++ C+ G +A R+ + P + +++
Sbjct: 742 LDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSM 801
Query: 698 IYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCL 757
I CK+G + +A +F K + I G+C G++EEA L ++ ++
Sbjct: 802 IKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREMLVS-- 859
Query: 758 EPDKFTVSAVINGF-CQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKG-LCTKGRMEEA 815
E +V +IN + + E GF ++ +G P + L + + G+
Sbjct: 860 E----SVVKLINRVDAELAESESIRGFLVELCEQGRVPQAIKILDEISSTIYPSGK--NL 913
Query: 816 RSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEA 860
S R + E I + D + S+ + + SLC G + +A
Sbjct: 914 GSYQRLQFLNDVNEEEIKKKDYVHDFHSLHSTVSSLCTSGKLEQA 958
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 2.0e-66, P = 2.0e-66
Identities = 230/883 (26%), Positives = 411/883 (46%)
Query: 42 GTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF-VCSSVVSGFCKIGKP 100
G PS T+ SL+ + ++ + +L+ M +K F +C V+ + GK
Sbjct: 218 GFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLG---RAGKI 274
Query: 101 ELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSC 160
A + G P+VV+YT L+ ALC +++ E+F +M++ K D V Y
Sbjct: 275 NEAYEILKRMDDEGC-GPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYIT 333
Query: 161 WI---------------CGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205
+ +M G PD V++TIL+D K G +A L+ M +
Sbjct: 334 LLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQG 393
Query: 206 LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAF 265
+ PNL TY +I G + +L++A +F +E LG+ + Y ID + GD A
Sbjct: 394 ILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSAL 453
Query: 266 RLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI--LG---DVVTYSTLLHGY 320
E M+ KGI P+IV N + L K GR +A+++ G+ +G D VTY+ ++ Y
Sbjct: 454 ETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY 513
Query: 321 IEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANS 380
+ ++ ++ + E G + D+++ N LI L+ +++A ++ M EM L
Sbjct: 514 SKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTV 573
Query: 381 VTYSTMIDGYCKLGRIEEALEIFDELRRMSIS-SVACYNCIINGLCKSGMVDMATEVFIE 439
VTY+T++ G K G+I+EA+E+F+ + + + +N + + LCK+ V +A ++ +
Sbjct: 574 VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFK 633
Query: 440 LNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICN---DVI-SFLC 495
+ + G V + I+ G V + F ++++ L + +C V+ + L
Sbjct: 634 MMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLI 693
Query: 496 KRGSSEVASELYMFMRKRGSVVTDQSYYSILK--GLDNEGKKWLIGPLLSMFVKENGLVE 553
+ + + LY + ++ + SIL G+DN S + NG+
Sbjct: 694 EDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVS-------FSERLVANGICR 746
Query: 554 PMISKF--LVQYLCL-NDVTNA-LLFIKNMKEISSTVTIPV-NVLKKLLKAGSVLDVYKL 608
S +++Y C N+V+ A LF K K++ +P N+L L ++++ +
Sbjct: 747 DGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQD 806
Query: 609 VMGAEDSLPCM-DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLC 667
V S C+ DV Y+ ++ A + G +++ +L N +T+N VI L
Sbjct: 807 VFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLV 866
Query: 668 RQGCFVEAFRLF-DSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPST 726
+ G +A L+ D + D P+ +Y LI L K G+L +AK+LF+ M+ G +P+
Sbjct: 867 KAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNC 926
Query: 727 RIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLD 786
IYN I+G+ K G+ + A + + PD T S +++ C G ++ L +F +
Sbjct: 927 AIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKE 986
Query: 787 FNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLN 846
G++PD + + ++ GL R+EEA + EM S+ + D+ + +LN
Sbjct: 987 LKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITP-----DLYTYNSLILN 1041
Query: 847 FLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKL 889
I+ G + EA I +EI QR G + + T N L
Sbjct: 1042 LGIA----GMVEEAGKIYNEI-------QRAGLEPNVFTFNAL 1073
|
|
| TAIR|locus:2016427 AT1G19290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 3.9e-54, P = 3.9e-54
Identities = 197/734 (26%), Positives = 353/734 (48%)
Query: 79 KYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNE 138
++ F V ++ + + G + A+ F+N + G + P+++S SL+ L G
Sbjct: 150 EFSFSPTVFDMILKVYAEKGLVKNALHVFDNMGNYGRI-PSLLSCNSLLSNLVRKGENFV 208
Query: 139 VNELFVRMESEGLKFDVVFYSCWI---CGQ-MVDK------------GIKPDTVSYTILL 182
++ +M S + DV S + C VDK G++ + V+Y L+
Sbjct: 209 ALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLI 268
Query: 183 DGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV 242
+G++ G +E +L M E + N++TYT++I G+CKKG +EEA VF+ +++ LV
Sbjct: 269 NGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLV 328
Query: 243 ADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEV 302
AD+ +Y L+DG CR G + A R+ ++M + G++ + N++ING CK G+ +AE++
Sbjct: 329 ADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQI 388
Query: 303 -SK----GILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFM 357
S+ + D TY+TL+ GY V+ L+ ++ + + ++ NIL+K
Sbjct: 389 FSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSR 448
Query: 358 VGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDE-LRRMSISSVAC 416
+GA D +L++ M + + A+ ++ ST+++ KLG EA+++++ L R ++
Sbjct: 449 IGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTIT 508
Query: 417 YNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIE 476
N +I+GLCK V+ A E+ +N V ++ + + G + +E
Sbjct: 509 LNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYME 568
Query: 477 NLRSEIYDII--CNDVISFLCK-RGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEG 533
R I+ I N +IS K R ++VA +L + +R RG T +Y +++ G N G
Sbjct: 569 --RKGIFPTIEMYNTLISGAFKYRHLNKVA-DLVIELRARGLTPTVATYGALITGWCNIG 625
Query: 534 K-KWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIP-VN 591
M K L + SK L+ + A L ++ K + + +P
Sbjct: 626 MIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQ--KIVDFDLLLPGYQ 683
Query: 592 VLKKLLKAGSV--LDVYKLVMGAEDSLPCMDVVD----YSTIVAALCREGYVNKALDLCA 645
LK+ L+A + L K+ E+S P +V Y+ +A LC+ G + A L +
Sbjct: 684 SLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFS 743
Query: 646 -FAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKE 704
+ + TY +IH G +AF L D + ++P+ V+Y LI LCK
Sbjct: 744 DLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKL 803
Query: 705 GQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTV 764
G + A++L ++ KG P+ YN+ IDG K G + EA + LK +K
Sbjct: 804 GNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMR----LK------EKMIE 853
Query: 765 SAVINGFCQKGDME 778
++ G ++GD++
Sbjct: 854 KGLVRGSDKQGDVD 867
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 5.8e-54, Sum P(2) = 5.8e-54
Identities = 188/799 (23%), Positives = 370/799 (46%)
Query: 15 SLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMS 74
SL+Q ++ P VL C L SS +F L+ + + V V ++M
Sbjct: 125 SLLQTLLLRALKPSDVFNVLFSCYEKC-KLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMI 183
Query: 75 DENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLG 134
+ P + S+++ G K LA+ F + +S+G ++P+V YT ++ +LC L
Sbjct: 184 TKVSLLP-EVRTLSALLHGLVKFRHFGLAMELFNDMVSVG-IRPDVYIYTGVIRSLCELK 241
Query: 135 RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKA 194
++ E+ ME+ G C D I P Y +L+DG K+ + +A
Sbjct: 242 DLSRAKEMIAHMEATG------------C----DVNIVP----YNVLIDGLCKKQKVWEA 281
Query: 195 VGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDG 254
VGI + L+P+++TY +++G CK + E + ++ L E ++L++G
Sbjct: 282 VGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEG 341
Query: 255 VCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAE----EVSK-GILGD 309
+ +RG ++ A L++ + G+ P++ YN +I+ LCK + +AE + K G+ +
Sbjct: 342 LRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPN 401
Query: 310 VVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQ 369
VTYS L+ + ++ L + + G+++ + N LI G + A
Sbjct: 402 DVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMA 461
Query: 370 AMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSIS-SVACYNCIINGLCKSG 428
M L VTY++++ GYC G+I +AL ++ E+ I+ S+ + +++GL ++G
Sbjct: 462 EMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAG 521
Query: 429 MVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRI--ENLRSEIYDII 486
++ A ++F E+ E + + ++++ +G + F+ + + + + Y
Sbjct: 522 LIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSY- 580
Query: 487 CNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFV 546
+I LC G + A + K + + Y +L G EGK + LS+
Sbjct: 581 -RPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK---LEEALSV-C 635
Query: 547 KENGLVEPMISKFLVQYLCLNDVT----NALLFIKNMKEISSTVTIPVNVL-KKLLKAGS 601
+E +V+ + LV Y L D + + LF +KE+ P +V+ ++ A S
Sbjct: 636 QE--MVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKS 693
Query: 602 VLDVYKLVMGAEDSL---PCM-DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIV 657
+K G D + C+ + V Y+ ++ LC+ G+VN+A LC+ + N V
Sbjct: 694 KTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQV 753
Query: 658 TYNTVIHSLCRQGCFVE-AFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDR 716
TY + L + ++ A L +++ + ++ + +Y LI C++G++ +A +L R
Sbjct: 754 TYGCFLDILTKGEVDMQKAVELHNAILK-GLLANTATYNMLIRGFCRQGRIEEASELITR 812
Query: 717 MVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGD 776
M+ G P Y + I+ C+ +++A + + + + PD+ + +I+G C G+
Sbjct: 813 MIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGE 872
Query: 777 MEGALGFFLDFNTKGVSPD 795
M A + +G+ P+
Sbjct: 873 MGKATELRNEMLRQGLIPN 891
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 2.4e-52, Sum P(2) = 2.4e-52
Identities = 194/741 (26%), Positives = 337/741 (45%)
Query: 100 PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYS 159
P+ A+ F K +V SY SL+ L G V V ++ + M Y
Sbjct: 103 PKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYV 162
Query: 160 CWICGQM-VDKG--IKPDTV--SYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYT 214
+C +M D+ +K + Y LL+ ++ G +++ + +M+ED++ PN+ TY
Sbjct: 163 LDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYN 222
Query: 215 AIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274
++ G+CK G +EEA K+ + GL D F Y +LI G C+R DLD AF++ +M K
Sbjct: 223 KMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLK 282
Query: 275 GIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGD-----VVTYSTLLHGYIEEDNVNGI 329
G + + V Y +I+GLC R +A ++ + D V TY+ L+ + +
Sbjct: 283 GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEA 342
Query: 330 LETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDG 389
L + +EE GI+ +I +LI +L E AR L M E L+ N +TY+ +I+G
Sbjct: 343 LNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALING 402
Query: 390 YCKLGRIEEALEIFD--ELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSL 447
YCK G IE+A+++ + E R++S + YN +I G CKS V A V ++ E+ +
Sbjct: 403 YCKRGMIEDAVDVVELMESRKLS-PNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLP 460
Query: 448 YVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDI-ICNDVISFLCKRGSSEVASEL 506
V + ++ G + + N R + D +I LCK E A +L
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLL-SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519
Query: 507 YMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCL 566
+ + ++G Y +++ G GK +L + +N L + L+ LC
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCA 579
Query: 567 ND-VTNALLFIKNMKEIS--STVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVD 623
+ + A L + M +I TV+ ++ +LLK G Y S D
Sbjct: 580 DGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHT 639
Query: 624 YSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLE 683
Y+T + CREG + A D+ A + G++ ++ TY+++I G + FD L+
Sbjct: 640 YTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGY---GDLGQTNFAFDVLK 696
Query: 684 RIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLE 743
R+ E S T + +L K LL+ K + + KG +P ++ ++ +
Sbjct: 697 RMRDTGCEPSQHTFL-SLIKH--LLEMK--YGKQ--KGSEPELCAMSNMME-------FD 742
Query: 744 EAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFN-TKGVSPDFLGFLYL 802
+ L + + + P+ + +I G C+ G++ A F +G+SP L F L
Sbjct: 743 TVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNAL 802
Query: 803 VKGLCTKGRMEEARSILREML 823
+ C + EA ++ +M+
Sbjct: 803 LSCCCKLKKHNEAAKVVDDMI 823
|
|
| TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 2.0e-52, P = 2.0e-52
Identities = 173/700 (24%), Positives = 317/700 (45%)
Query: 155 VVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYT 214
V F S W+ MV GI P T ++ +L+ ++ A + ++M E +PN T+
Sbjct: 128 VEFVS-WLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFG 186
Query: 215 AIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274
++ G+CK G ++ + +E G++ ++ +Y T++ CR G D + +++E M ++
Sbjct: 187 ILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREE 246
Query: 275 GIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI-----LG----DVVTYSTLLHGYIEEDN 325
G+ P IVT+N+ I+ LCK G+ DA + + LG + +TY+ +L G+ +
Sbjct: 247 GLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKV-- 304
Query: 326 VNGILETKQRLEEAGIQMD----IVMCNILIKALFMVGALEDARALYQAMPEMNLVANSV 381
G+LE + L E+ + D + NI ++ L G +A + + M + + +
Sbjct: 305 --GLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIY 362
Query: 382 TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVAC-YNCIINGLCKSGMVDMATEVFIEL 440
+Y+ ++DG CKLG + +A I ++R + A Y C+++G C G VD A + E+
Sbjct: 363 SYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEM 422
Query: 441 NEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSS 500
I+L + + G + + ++ + + CN ++ LC G
Sbjct: 423 MRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGEL 482
Query: 501 EVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFL 560
+ A E+ MR GS L N G + IG + ++ N L + + L
Sbjct: 483 DKAIEIVKGMRVHGSAA-----------LGNLGNSY-IGLVDDSLIENNCLPDLITYSTL 530
Query: 561 VQYLC-LNDVTNAL-LFIKNMKEISSTVTIPVNV-LKKLLKAGSVLDVYKLVMGAEDSLP 617
+ LC A LF + M E ++ N+ + K G + ++++ E
Sbjct: 531 LNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGC 590
Query: 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFR 677
+ Y++++ L + + + L K KGI+ NI TYNT I LC +A
Sbjct: 591 HKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATN 650
Query: 678 LFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMV-LKGFKPSTRIYNSFIDGY 736
L D + + ++ P+ S+ LI CK A+++F+ V + G K +Y+ +
Sbjct: 651 LLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEG--LYSLMFNEL 708
Query: 737 CKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF 796
GQL +A + L + E F ++ C+K ++E A G +G D
Sbjct: 709 LAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDP 768
Query: 797 LGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVD 836
+ ++ GL G +EA S +M++ SV E+ N+VD
Sbjct: 769 AALMPVIDGLGKMGNKKEANSFADKMMEMASVGEVANKVD 808
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 4.7e-52, Sum P(2) = 4.7e-52
Identities = 131/484 (27%), Positives = 246/484 (50%)
Query: 68 EVLELMSDENVKYPFDNFV-CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126
+ ++L D PF + V + ++S K+ K EL I E +LG + ++ +Y+
Sbjct: 66 DAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG-ISHDLYTYSIF 124
Query: 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG---------------QMVDKGI 171
+ C +++ + +M G + D+V S + G QMV+ G
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184
Query: 172 KPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFT 231
KPDT ++T L+ G +AV ++++M++ +P+L+TY ++ G CK+G ++ A
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALN 244
Query: 232 VFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLC 291
+ K+E + A+ ++ T+ID +C+ ++ A L +ME KGI+P++VTYN++IN LC
Sbjct: 245 LLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLC 304
Query: 292 KVGRTSDAEEV-----SKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIV 346
GR SDA + K I +VVT++ L+ + +E + + + + + I D +
Sbjct: 305 NYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTI 364
Query: 347 MCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDEL 406
N+LI M L++A+ +++ M + + N TY+T+I+G+CK R+E+ +E+F E+
Sbjct: 365 TYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREM 424
Query: 407 -RRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGV 465
+R + + Y II G ++G D A VF ++ + + + I+L + G +
Sbjct: 425 SQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKL 484
Query: 466 GGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSI 525
L ++ E+ I N +I +CK G A +L+ + + VVT Y ++
Sbjct: 485 DTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVT---YNTM 541
Query: 526 LKGL 529
+ GL
Sbjct: 542 ISGL 545
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 6.6e-51, Sum P(2) = 6.6e-51
Identities = 136/499 (27%), Positives = 251/499 (50%)
Query: 76 ENVKY-PFDNFV-CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCML 133
E VK PF + + S ++S K+ K ++ I E +LG + N +Y+ L+ C
Sbjct: 71 EMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG-IPHNHYTYSILINCFCRR 129
Query: 134 GRVNEVNELFVRMESEGLKFDVVFYSCWICGQ-----------MVDK----GIKPDTVSY 178
++ + +M G + ++V S + G +VD+ G +P+TV++
Sbjct: 130 SQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTF 189
Query: 179 TILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVED 238
L+ G +A+ ++++M+ +P+L+TY ++ G CK+G + AF + K+E
Sbjct: 190 NTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ 249
Query: 239 LGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSD 298
L +Y T+IDG+C+ +D A L ++ME KGI+P++VTY+++I+ LC GR SD
Sbjct: 250 GKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSD 309
Query: 299 AEE-----VSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIK 353
A + + I DV T+S L+ +++E + + + + I IV + LI
Sbjct: 310 ASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLIN 369
Query: 354 ALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDEL-RRMSIS 412
M L++A+ +++ M + + VTY+T+I G+CK R+EE +E+F E+ +R +
Sbjct: 370 GFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG 429
Query: 413 SVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVG-GVLNF 471
+ YN +I GL ++G DMA E+F E+ G+ + + +L G + ++ F
Sbjct: 430 NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF 489
Query: 472 VYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDN 531
Y ++ + E N +I +CK G E +L+ + +G +Y +++ G
Sbjct: 490 EY-LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 548
Query: 532 EGKKWLIGPLLSMFVKENG 550
+G K L +KE+G
Sbjct: 549 KGSKEEADALFKE-MKEDG 566
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 4.5e-50, P = 4.5e-50
Identities = 138/467 (29%), Positives = 237/467 (50%)
Query: 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLEL 72
F +L+ GFC++ E LV D + P T +L+ C +G +S A+ +++
Sbjct: 143 FSTLVNGFCLEGRVSEAVALV--DRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDR 200
Query: 73 MSDENVKYPF--DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130
M V+Y F D V++ CK G LA+ F +K +VV Y+ ++ +L
Sbjct: 201 M----VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN-IKASVVQYSIVIDSL 255
Query: 131 CMLGRVNEVNELFVRMESEGLKFDVVFYS------C----WICG-----QMVDKGIKPDT 175
C G ++ LF ME +G+K DVV YS C W G +M+ + I PD
Sbjct: 256 CKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV 315
Query: 176 VSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKK 235
V+++ L+D F KEG + +A + N+MI + P+ ITY ++I GFCK+ L EA +F
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375
Query: 236 VEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGR 295
+ G D Y+ LI+ C+ +D RL ++ KG+ P+ +TYNT++ G C+ G+
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435
Query: 296 TSDAEE-----VSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNI 350
+ A+E VS+G+ VVTY LL G + +N LE ++++++ + + I + NI
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 495
Query: 351 LIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMS 410
+I + ++DA +L+ ++ + + + VTY+ MI G CK G + EA +F +++
Sbjct: 496 IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555
Query: 411 IS-SVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIIL 456
+ YN +I + + E+ E+ G S K+++
Sbjct: 556 CTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVI 602
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| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 135/495 (27%), Positives = 253/495 (51%)
Query: 68 EVLELMSDENVKYPFDNFV-CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT-- 124
+ + L D PF + V S ++S K+ K +L I E +LG + N+ +Y+
Sbjct: 58 DAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG-ISHNLYTYSIF 116
Query: 125 --------SLVIALCMLGRVNEVN--ELFVRMES--EGLKF-DVVFYSCWICGQMVDKGI 171
L +AL +LG++ ++ V + S G + + + + QMV+ G
Sbjct: 117 INYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 176
Query: 172 KPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFT 231
+PDTV++T L+ G + +AV ++ +M+ +P+L+TY A+I G CK+G+ + A
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 236
Query: 232 VFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLC 291
+ K+E + AD +Y T+IDG+C+ +D AF L ME KGIKP + TYN +I+ LC
Sbjct: 237 LLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLC 296
Query: 292 KVGRTSDAEEV-----SKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQM--- 343
GR SDA + K I D+V ++ L+ +++E G L ++L + ++
Sbjct: 297 NYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKE----GKLVEAEKLYDEMVKSKHC 352
Query: 344 --DIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALE 401
D+V N LIK +E+ +++ M + LV N+VTY+T+I G+ + + A
Sbjct: 353 FPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 412
Query: 402 IFDELRRMSIS-SVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATF 460
+F ++ + + YN +++GLC +G V+ A VF + ++ + L + + +++A
Sbjct: 413 VFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALC 472
Query: 461 AKGGV--GGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVT 518
G V G L ++ ++ + + ++S C++G E A L++ M++ G +
Sbjct: 473 KAGKVEDGWDLFCSLSLKGVKPNV--VTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPN 530
Query: 519 DQSYYSILKGLDNEG 533
+Y ++++ +G
Sbjct: 531 SGTYNTLIRARLRDG 545
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LVD3 | PP434_ARATH | No assigned EC number | 0.4426 | 0.8943 | 0.8887 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00038665001 | SubName- Full=Chromosome chr18 scaffold_96, whole genome shotgun sequence; (993 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 965 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-23
Identities = 66/289 (22%), Positives = 135/289 (46%), Gaps = 18/289 (6%)
Query: 170 GIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEA 229
G+K D YT L+ +K G ++ + ++M+ + N+ T+ A+I G + G++ +A
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 230 FTVF-----KKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM--EKKGIKPSIVT 282
F + K V+ D V+ LI + G +D AF +L +M E I P +T
Sbjct: 527 FGAYGIMRSKNVK-----PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581
Query: 283 YNTIINGLCKVGRTSDAEEVSK-----GILGDVVTYSTLLHGYIEEDNVNGILETKQRLE 337
++ G+ A+EV + I G Y+ ++ ++ + + L ++
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 338 EAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIE 397
+ G++ D V + L+ G L+ A + Q + + +V+YS+++ +
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 398 EALEIFDELRRMSIS-SVACYNCIINGLCKSGMVDMATEVFIELNEKGL 445
+ALE++++++ + + +V+ N +I LC+ + A EV E+ GL
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-22
Identities = 93/423 (21%), Positives = 179/423 (42%), Gaps = 65/423 (15%)
Query: 34 LKDCLRNHGTLPSSFTFCSLV-----------YSFCSQG-NMSRAVEVLELMSDENVKYP 81
K C + + +F F L+ S C+ ++ A+ VL L+ + +K
Sbjct: 413 FKAC-KKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA- 470
Query: 82 FDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNE 141
D + ++++S K GK + F ++ G ++ NV ++ +L+ G+V +
Sbjct: 471 -DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVAKAFG 528
Query: 142 LFVRMESEGLKFDVVFYSCWI--CGQM--VDKG-------------IKPDTVSYTILLDG 184
+ M S+ +K D V ++ I CGQ VD+ I PD ++ L+
Sbjct: 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588
Query: 185 FSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD 244
+ G +++A + + E ++ YT + +KG + A +++ ++ G+ D
Sbjct: 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 245 EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSK 304
E ++ L+D GDLD AF +L+D K+GIK V+Y++++ G C S+A+ K
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GAC-----SNAKNWKK 702
Query: 305 GILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDA 364
LE + ++ ++ + N LI AL L A
Sbjct: 703 A------------------------LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738
Query: 365 RALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSIS-SVACYNCIING 423
+ M + L N++TYS ++ + + L++ + + I ++ CI G
Sbjct: 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-G 797
Query: 424 LCK 426
LC
Sbjct: 798 LCL 800
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 3e-19
Identities = 83/366 (22%), Positives = 155/366 (42%), Gaps = 64/366 (17%)
Query: 116 LKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWI--C---GQ----- 165
LK + YT+L+ G+V+ + E+F M + G++ +V + I C GQ
Sbjct: 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527
Query: 166 -----MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR--LRPNLITYTAIIF 218
M K +KPD V + L+ + G +++A +L +M + + P+ IT A++
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587
Query: 219 GFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKP 278
G+++ A V++ + + + VY ++ ++GD D A + +DM+KKG+KP
Sbjct: 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647
Query: 279 SIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEE 338
+EV L DV ++ L D IL Q +
Sbjct: 648 ---------------------DEVFFSALVDVAGHAGDL------DKAFEIL---QDARK 677
Query: 339 AGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEE 398
GI++ V + L+ A + A LY+ + + L T + +I C+ ++ +
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737
Query: 399 ALEIFDELRRM---------SISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYV 449
ALE+ E++R+ SI VA + D+ ++ + E G+ +
Sbjct: 738 ALEVLSEMKRLGLCPNTITYSILLVASE--------RKDDADVGLDLLSQAKEDGIKPNL 789
Query: 450 GMHKII 455
M + I
Sbjct: 790 VMCRCI 795
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 2e-18
Identities = 83/361 (22%), Positives = 152/361 (42%), Gaps = 43/361 (11%)
Query: 123 YTSLVIALCMLGRVNEVNELFVRMESEGL---------KFDVVFYSCWICGQMVD----- 168
Y L+ GR+ + +L ME GL KF F +C + +
Sbjct: 377 YNRLLRD----GRIKDCIDLLEDMEKRGLLDMDKIYHAKF---FKACKKQRAVKEAFRFA 429
Query: 169 KGIKPDTVS-YTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLE 227
K I+ T+S + +L+ + I+ A+ +L + E L+ + YT +I K GK++
Sbjct: 430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489
Query: 228 EAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTII 287
F VF ++ + G+ A+ + LIDG R G + AF M K +KP V +N +I
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 288 NGLCKVGRTSDAEEV-------SKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAG 340
+ + G A +V + I D +T L+ V+ E Q + E
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 341 IQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEAL 400
I+ + I + + G + A ++Y M + + + V +S ++D G +++A
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 401 EIFDELRR--MSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQA 458
EI + R+ + + +V+ Y+ ++ + +K L LY + I L+
Sbjct: 670 EILQDARKQGIKLGTVS-YSSLMGACSNAKNW-----------KKALELYEDIKSIKLRP 717
Query: 459 T 459
T
Sbjct: 718 T 718
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Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 2e-17
Identities = 98/432 (22%), Positives = 164/432 (37%), Gaps = 114/432 (26%)
Query: 79 KYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL---VIALC---- 131
K PF + CSSV G KP + I + K + T + ++LC
Sbjct: 40 KTPFSSISCSSVEQGL----KPRPRLKPEPIRIEVSESKDARLDDTQIRKSGVSLCSQIE 95
Query: 132 ---MLGRVNEVNELFVRMESEGL------KFDVVFYSCW----------ICGQMVDKGIK 172
GR E ELF +E+ +D + +C + + G +
Sbjct: 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE 155
Query: 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTV 232
PD +L K G + A + ++M E NL ++ II G G EAF +
Sbjct: 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFAL 211
Query: 233 FKK-----------------------------------VEDLGLVADEFVYATLIDGVCR 257
F++ V G+V D FV LID +
Sbjct: 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271
Query: 258 RGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLL 317
GD++ A + + M +K + V +N+++ G Y+ L
Sbjct: 272 CGDIEDARCVFDGMPEK----TTVAWNSMLAG-----------------------YA--L 302
Query: 318 HGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDAR----ALYQAMPE 373
HGY EE L + ++G+ +D +I+I+ + LE A+ L +
Sbjct: 303 HGYSEE-----ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357
Query: 374 MNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMA 433
+++VAN+ ++D Y K GR+E+A +FD RM ++ +N +I G G A
Sbjct: 358 LDIVANT----ALVDLYSKWGRMEDARNVFD---RMPRKNLISWNALIAGYGNHGRGTKA 410
Query: 434 TEVFIELNEKGL 445
E+F + +G+
Sbjct: 411 VEMFERMIAEGV 422
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 2e-16
Identities = 66/307 (21%), Positives = 135/307 (43%), Gaps = 30/307 (9%)
Query: 54 VYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISL 113
+YS C + +A+EV + +++V +S+++G + A+ FF +
Sbjct: 433 MYSKCKC--IDKALEVFHNIPEKDV------ISWTSIIAGLRLNNRCFEALIFFRQML-- 482
Query: 114 GALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWI-----CGQMVD 168
LKPN V+ + + A +G + E+ + G+ FD + + CG+M
Sbjct: 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 169 -----KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKK 223
+ D VS+ ILL G+ G AV + N+M+E + P+ +T+ +++ +
Sbjct: 543 AWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602
Query: 224 GKLEEAFTVFKKVED-LGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVT 282
G + + F +E+ + + YA ++D + R G L A+ + M I P
Sbjct: 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAV 659
Query: 283 YNTIINGLCKVGRTSDAEEVS-KGIL----GDVVTYSTLLHGYIEEDNVNGILETKQRLE 337
+ ++N C++ R + E++ + I V Y L + Y + + + ++ +
Sbjct: 660 WGALLNA-CRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718
Query: 338 EAGIQMD 344
E G+ +D
Sbjct: 719 ENGLTVD 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 3e-16
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 244 DEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK 292
D Y TLIDG C++G ++ A +L +M+K+GIKP++ TY+ +I+GLCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 3e-15
Identities = 147/724 (20%), Positives = 272/724 (37%), Gaps = 153/724 (21%)
Query: 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNE--------- 138
+S + C G+ E A+ E+ L + + +Y +L LC R E
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALF-RLCEWKRAVEEGSRVCSRA 112
Query: 139 ---VNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAV 195
L VR+ + L V F + K + D S+ +L+ G++K G ++A+
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 196 GILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGV 255
+ ++M+ +RP++ T+ ++ L V V G D V LI
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 256 CRRGDLDCAFRLLEDMEKKGIKPSIVTYNTII-----NGLCKVG---------------- 294
+ GD+ A + + M ++ +++N +I NG C G
Sbjct: 233 VKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288
Query: 295 RTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKA 354
T + + +LGD +HGY+ + G +D+ +CN LI+
Sbjct: 289 MTITSVISACELLGD-ERLGREMHGYV---------------VKTGFAVDVSVCNSLIQM 332
Query: 355 LFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSV 414
+G+ +A ++ M + V+++ MI GY K G ++ALE + M +V
Sbjct: 333 YLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETY---ALMEQDNV 385
Query: 415 ACYNCIINGL---CKS-GMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLN 470
+ I + C G +D+ ++ KGL YV
Sbjct: 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV--------------------- 424
Query: 471 FVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGL- 529
++ N +I K + A E++ + ++ + S+ SI+ GL
Sbjct: 425 --------------VVANALIEMYSKCKCIDKALEVFHNIPEKDVI----SWTSIIAGLR 466
Query: 530 -DNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTI 588
+N + LI F + ++P S L+ L AL KEI + V
Sbjct: 467 LNNRCFEALI-----FFRQMLLTLKPN-SVTLIAALSACARIGAL---MCGKEIHAHV-- 515
Query: 589 PVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALD-LCAFA 647
L+ G +G + LP + ++ R G +N A + +
Sbjct: 516 --------LRTG---------IGFDGFLP-------NALLDLYVRCGRMNYAWNQFNSHE 551
Query: 648 KNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQL 707
K ++V++N ++ G A LF+ + + P EV++ +L+ + G +
Sbjct: 552 K------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
Query: 708 LDAKKLFDRMVLK-GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSA 766
+ F M K P+ + Y +D + G+L EA+ F++ + I PD A
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI---TPDPAVWGA 662
Query: 767 VING 770
++N
Sbjct: 663 LLNA 666
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 3e-13
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK 222
PD V+Y L+DG+ K+G +E+A+ + N+M + ++PN+ TY+ +I G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 3e-13
Identities = 25/49 (51%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 379 NSVTYSTMIDGYCKLGRIEEALEIFDELRRMSIS-SVACYNCIINGLCK 426
+ VTY+T+IDGYCK G++EEAL++F+E+++ I +V Y+ +I+GLCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 6e-12
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 655 NIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCK 703
++VTYNT+I C++G EA +LF+ +++ + P+ +Y+ LI LCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 8e-12
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 278 PSIVTYNTIINGLCKVGRTSDAEEV-----SKGILGDVVTYSTLLHGY 320
P +VTYNT+I+G CK G+ +A ++ +GI +V TYS L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-11
Identities = 85/411 (20%), Positives = 173/411 (42%), Gaps = 49/411 (11%)
Query: 49 TFC-SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFF 107
+ C SL+ + S G+ A +V M + D ++++SG+ K G P+ A+ +
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETK------DAVSWTAMISGYEKNGLPDKALETY 377
Query: 108 ENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMV 167
+ + P+ ++ S++ A LG ++ +L E +GL
Sbjct: 378 A-LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL---------------- 420
Query: 168 DKGIKPDTVSYTI----LLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKK 223
+SY + L++ +SK I+KA+ + + + E ++I++T+II G
Sbjct: 421 --------ISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLN 468
Query: 224 GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTY 283
+ EA F+++ L L + + R G L C + + + GI
Sbjct: 469 NRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527
Query: 284 NTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQM 343
N +++ + GR + A DVV+++ LL GY+ + +E R+ E+G+
Sbjct: 528 NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587
Query: 344 DIVMCNILIKALFMVGALEDARALYQAM-PEMNLVANSVTYSTMIDGYCKLGRIEEALEI 402
D V L+ A G + + +M + ++ N Y+ ++D + G++ EA
Sbjct: 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647
Query: 403 FDELRRMSIS-SVACYNCIINGLCKSGMVD---MATEVFIELNEKGLSLYV 449
+ +M I+ A + ++N V+ +A + EL+ + Y+
Sbjct: 648 ---INKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-11
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 689 PSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCK 738
P V+Y TLI CK+G++ +A KLF+ M +G KP+ Y+ IDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-11
Identities = 107/511 (20%), Positives = 199/511 (38%), Gaps = 105/511 (20%)
Query: 247 VYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRT-SDAEEVSKG 305
Y L+ R G + LLEDMEK+G+ Y+ CK R +A +K
Sbjct: 376 AYNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431
Query: 306 ILGDVV-TYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDA 364
I + T++ L+ +++G L + ++EAG++ D + LI G ++
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD-- 489
Query: 365 RALYQAMPEM---NLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSIS-SVACYNCI 420
A+++ EM + AN T+ +IDG + G++ +A + +R ++ +N +
Sbjct: 490 -AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 421 INGLCKSGMVDMATEVFIELNEKGLSLYVGMHKI--------ILQATFAKGGVGGVLNFV 472
I+ +SG VD A +V E+ + H I L A G V
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAET-------HPIDPDHITVGALMKACANAGQVDRAKEV 601
Query: 473 Y---RIENLRS--EIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILK 527
Y N++ E+Y I ++ ++G + A +Y M+K+G V D+ ++S L
Sbjct: 602 YQMIHEYNIKGTPEVYTI----AVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSAL- 655
Query: 528 GLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVT 587
+D G D+ A +++ +
Sbjct: 656 -VDVAGHA-------------------------------GDLDKAFEILQDAR------- 676
Query: 588 IPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFA 647
K+ +K G+V Y +MGA C + ++ KAL+L
Sbjct: 677 ------KQGIKLGTV--SYSSLMGA-----CSNAKNW-------------KKALELYEDI 710
Query: 648 KNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQL 707
K+ + + T N +I +LC +A + ++R+ + P+ ++Y+ L+ ++
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 708 LDAKKLFDRMVLKGFKPSTRIYNSFIDGYCK 738
L + G KP+ + I G C
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRC-ITGLCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 2e-11
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 344 DIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCK 392
D+V N LI G +E+A L+ M + + N TYS +IDG CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 2e-11
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 724 PSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQ 773
P YN+ IDGYCK G++EEA K +++K ++P+ +T S +I+G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-10
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 20/70 (28%)
Query: 118 PNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVS 177
P+VV+Y +L+ C G+V E +LF +M +GIKP+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLF--------------------NEMKKRGIKPNVYT 40
Query: 178 YTILLDGFSK 187
Y+IL+DG K
Sbjct: 41 YSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 6e-10
Identities = 62/301 (20%), Positives = 123/301 (40%), Gaps = 43/301 (14%)
Query: 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAI 111
S++ + G A+ + M D V D F S ++ F ++ E A I
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVS--IDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 112 SLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGI 171
G ++V+ T+LV GR+ + +F RM + L
Sbjct: 353 RTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL-------------------- 391
Query: 172 KPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFT 231
+S+ L+ G+ G KAV + +MI + + PN +T+ A++ G E+ +
Sbjct: 392 ----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
Query: 232 VFKKV-EDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGL 290
+F+ + E+ + YA +I+ + R G LD A+ ++ KP++ + ++
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTA- 503
Query: 291 CKVGRTSD-AEEVSKGILG----DVVTYSTLLHGYI---EEDNVNGILETKQRLEEAGIQ 342
C++ + + ++ + G + Y LL+ Y + ++ET L+ G+
Sbjct: 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET---LKRKGLS 560
Query: 343 M 343
M
Sbjct: 561 M 561
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 7e-10
Identities = 68/293 (23%), Positives = 114/293 (38%), Gaps = 68/293 (23%)
Query: 640 ALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEA-FRLFDSLERIDMVPSEVSYATLI 698
AL + + G+ + Y T+I S C + V+A F +F + + + ++ LI
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLI-STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514
Query: 699 YNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINC-- 756
+ GQ+ A + M K KP ++N+ I + G ++ AF L ++K
Sbjct: 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574
Query: 757 LEPDKFTVSAVINGFC-----------------------------------QKGDMEGAL 781
++PD TV A++ QKGD + AL
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 782 GFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQS---------------- 825
+ D KGV PD + F LV G +++A IL++ +
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
Query: 826 ------KSVLELINRVDIEV----ESESVLNFLIS-LCEQGSILEAIAILDEI 867
K LEL DI+ + S +N LI+ LCE + +A+ +L E+
Sbjct: 695 SNAKNWKKALELY--EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-09
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCR 668
DVV Y+T++ C++G V +AL L K +GI N+ TY+ +I LC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 4e-09
Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 43/205 (20%)
Query: 655 NIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLI---------------- 698
N+ ++ T+I L G + EAF LF + ++ ++
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247
Query: 699 ---------------------YNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYC 737
Y+ C G + DA+ +FD M K +T +NS + GY
Sbjct: 248 CCVLKTGVVGDTFVSCALIDMYSKC--GDIEDARCVFDGMPEK----TTVAWNSMLAGYA 301
Query: 738 KFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFL 797
G EEA ++++ + + D+FT S +I F + +E A G D +
Sbjct: 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361
Query: 798 GFLYLVKGLCTKGRMEEARSILREM 822
LV GRME+AR++ M
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRM 386
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 7e-09
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 374 MNLVANSVTYSTMIDGYCKLGRIEEALEIFDELR 407
L + VTY+T+IDG C+ GR++EA+E+ DE+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.2 bits (124), Expect = 9e-09
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 274 KGIKPSIVTYNTIINGLCKVGRTSDAEEV 302
KG+KP +VTYNT+I+GLC+ GR +A E+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVEL 29
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 44/206 (21%), Positives = 94/206 (45%), Gaps = 4/206 (1%)
Query: 620 DVVDYSTIVAALCREGYVNKALDLCA--FAKNKGITVNIVTYNTVIHSLCRQGCFVEAFR 677
D V ++ +++A + G V++A D+ A A+ I + +T ++ + G A
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600
Query: 678 LFDSLERIDMVPSEVSYATLIYNLC-KEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGY 736
++ + ++ + Y T+ N C ++G A ++D M KG KP +++ +D
Sbjct: 601 VYQMIHEYNIKGTPEVY-TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659
Query: 737 CKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF 796
G L++AF+ L D + ++ + S+++ + + AL + D + + P
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719
Query: 797 LGFLYLVKGLCTKGRMEEARSILREM 822
L+ LC ++ +A +L EM
Sbjct: 720 STMNALITALCEGNQLPKALEVLSEM 745
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 2e-08
Identities = 77/355 (21%), Positives = 138/355 (38%), Gaps = 68/355 (19%)
Query: 83 DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNEL 142
D FV +++ + K G E A F+ G + V++ S++ + G E L
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFD-----GMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 143 FVRMESEGLKFDVVFYSCWI---------------CGQMVDKGIKPDTVSYTILLDGFSK 187
+ M G+ D +S I ++ G D V+ T L+D +SK
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 188 EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFV 247
G +E A + ++M R NLI++ A+I G+ G+ +A +F+++ G+ +
Sbjct: 373 WGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428
Query: 248 YATLIDGVCRRGDLDCAFRLLEDM-EKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI 306
+ ++ G + + + + M E IKP + Y +I L + G +A
Sbjct: 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA------- 481
Query: 307 LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDAR- 365
Y+ + A + + M L+ A + LE R
Sbjct: 482 ------YAMI--------------------RRAPFKPTVNMWAALLTACRIHKNLELGRL 515
Query: 366 ---ALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSV-AC 416
LY PE + N Y +++ Y GR EA ++ + L+R +S AC
Sbjct: 516 AAEKLYGMGPEK--LNN---YVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 134/642 (20%), Positives = 236/642 (36%), Gaps = 123/642 (19%)
Query: 254 GVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDA-EEVSKGILGDVVT 312
+C G L+ A +LLE M++ + Y + LC+ R + V L +
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPS 118
Query: 313 YSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMP 372
L N ++ G L A ++ MP
Sbjct: 119 LGVRLG------------------------------NAMLSMFVRFGELVHAWYVFGKMP 148
Query: 373 EMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSIS-SVACYNCIINGLCKSGMVD 431
E +L +++ ++ GY K G +EAL ++ + + V + C++ C G+ D
Sbjct: 149 ERDLF----SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-C-GGIPD 202
Query: 432 --MATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIIC-N 488
EV + G L V + ++ G V R+ R D I N
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV-----VSARLVFDRMPRRDCISWN 257
Query: 489 DVISFLCKRGSSEVASELYMFMRKRGSVVTD-QSYYSILKGLDNEGKKWLIGPLLSMFVK 547
+IS + G EL+ MR+ SV D + S++ + G + L + VK
Sbjct: 258 AMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVK 316
Query: 548 ENGLVEPMISKFLVQ-YLCLNDVTNALLFIKNM--KEISSTVTIPVNVLKKLL--KAGSV 602
V+ + L+Q YL L A M K+ S + K L KA
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA--- 373
Query: 603 LDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTV 662
L+ Y L M ++ P D + +++++A G ++ + L A+ KG+ +V N +
Sbjct: 374 LETYAL-MEQDNVSP--DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 663 IHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK-- 720
I + C +A +F ++ D++ S+ ++I L + +A F +M+L
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486
Query: 721 -------------------------------------GFKPSTRIYNSFIDGYCKFGQLE 743
GF P N+ +D Y + G++
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP-----NALLDLYVRCGRMN 541
Query: 744 EAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLV 803
A+ + N E D + + ++ G+ G A+ F GV+PD + F+ L+
Sbjct: 542 YAWN-----QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
Query: 804 -----KGLCTKG-----RMEEARSILREMLQSKSVLELINRV 835
G+ T+G MEE SI + V++L+ R
Sbjct: 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 47/209 (22%), Positives = 95/209 (45%), Gaps = 7/209 (3%)
Query: 614 DSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFV 673
D +P V +++++A GY +AL L ++ G++++ T++ +I R
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342
Query: 674 EAFRLFDSLERIDMVPSEVSYATLIYNL-CKEGQLLDAKKLFDRMVLKGFKPSTRIYNSF 732
A + L R P ++ T + +L K G++ DA+ +FDRM K +N+
Sbjct: 343 HAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNAL 397
Query: 733 IDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFN-TKG 791
I GY G+ +A + + + P+ T AV++ G E F +
Sbjct: 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457
Query: 792 VSPDFLGFLYLVKGLCTKGRMEEARSILR 820
+ P + + +++ L +G ++EA +++R
Sbjct: 458 IKPRAMHYACMIELLGREGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-08
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 240 GLVADEFVYATLIDGVCRRGDLDCAFRLLEDME 272
GL D Y TLIDG+CR G +D A LL++ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 9e-08
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 381 VTYSTMIDGYCKLGRIEEALEIFDELRRMSI 411
VTY+++I GYCK G++EEALE+F E++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 4/195 (2%)
Query: 578 NMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYV 637
N+K TI VN + L +Y M + P D V +S +V G +
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYD-DMKKKGVKP--DEVFFSALVDVAGHAGDL 665
Query: 638 NKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATL 697
+KA ++ A+ +GI + V+Y++++ + + +A L++ ++ I + P+ + L
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725
Query: 698 IYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCL 757
I LC+ QL A ++ M G P+T Y+ + + + L K + +
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
Query: 758 EPDKFTVSAVINGFC 772
+P+ + I G C
Sbjct: 786 KPN-LVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-07
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 11/207 (5%)
Query: 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCR-QGCFVEAFRL 678
+Y L R+G + +DL + +G+ Y+ C+ Q EAFR
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR- 427
Query: 679 FDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVL---KGFKPSTRIYNSFIDG 735
F L + +S ++ ++C Q D + L G K ++Y + I
Sbjct: 428 FAKL----IRNPTLSTFNMLMSVCASSQ--DIDGALRVLRLVQEAGLKADCKLYTTLIST 481
Query: 736 YCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPD 795
K G+++ F+ H++ +E + T A+I+G + G + A G + +K V PD
Sbjct: 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541
Query: 796 FLGFLYLVKGLCTKGRMEEARSILREM 822
+ F L+ G ++ A +L EM
Sbjct: 542 RVVFNALISACGQSGAVDRAFDVLAEM 568
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 650 KGITVNIVTYNTVIHSLCRQGCFVEAFRLFD 680
KG+ ++VTYNT+I LCR G EA L D
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 206 LRPNLITYTAIIFGFCKKGKLEEAFTVFKK 235
L+P+++TY +I G C+ G+++EA + +
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 381 VTYSTMIDGYCKLGRIEEALEIFDELRRMSIS 412
VTY+T+IDG CK GR+EEALE+F E++ I
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-07
Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 36/233 (15%)
Query: 610 MGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQ 669
M AE D + ++ A G V++A ++ I Y ++S ++
Sbjct: 568 MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627
Query: 670 GCFVEAFRLFDSLERIDMVPSE-----------------------------------VSY 694
G + A ++D +++ + P E VSY
Sbjct: 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 695 ATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKI 754
++L+ A +L++ + +P+ N+ I C+ QL +A + L ++K
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
Query: 755 NCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLC 807
L P+ T S ++ +K D + L G+ P+ + + GLC
Sbjct: 748 LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 2e-06
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKM 201
KG+KPD V+Y L+DG + G +++AV +L++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 720 KGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHD 751
KG KP YN+ IDG C+ G+++EA + L +
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 413 SVACYNCIINGLCKSGMVDMATEVFIELNEKGLS 446
V YN +I+G CK G V+ A ++F E+ ++G+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK 35
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 246 FVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSI 280
Y TLIDG+C+ G ++ A L ++M+++GI+P +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 83 DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131
D ++++ G+CK GK E A+ F G +KPNV +Y+ L+ LC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 3e-05
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 686 DMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMV 718
+ P V+Y TLI LC+ G++ +A +L D M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPST 726
V+Y TLI LCK G++ +A +LF M +G +P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 5e-05
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 759 PDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLC 807
PD T + +I+G+C+KG +E AL F + +G+ P+ + L+ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 55/237 (23%), Positives = 90/237 (37%), Gaps = 15/237 (6%)
Query: 593 LKKLLKAGSVLDVYKLVMGAEDSLP-CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKG 651
++KL+ G + +L E P + Y +V A + + ++ G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 652 ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSL-ERIDMVPSEVSYATLIYNLCKEGQLLDA 710
+ N V+ + G ++A RLFD + ER + S+ T+I L G +A
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER-----NLASWGTIIGGLVDAGNYREA 208
Query: 711 KKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLH--DLKINCLEPDKFTVSAVI 768
LF M G R + + G A + LH LK + D F A+I
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSA-RAGQQLHCCVLKTGVVG-DTFVSCALI 266
Query: 769 NGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQS 825
+ + + GD+E A F K + + ++ G G EEA + EM S
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDS 319
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 1e-04
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 414 VACYNCIINGLCKSGMVDMATEVFIE 439
V YN +I+GLC++G VD A E+ E
Sbjct: 7 VVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 116 LKPNVVSYTSLVIALCMLGRVNEVNELFVRME 147
LKP+VV+Y +L+ LC GRV+E EL ME
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 211 ITYTAIIFGFCKKGKLEEAFTVFKKVEDLGL 241
+TY ++I G+CK GKLEEA +FK++++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSE 691
VTYNT+I LC+ G EA LF ++ + P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 3e-04
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96
P T+ +L+ +C +G + A+++ M +K P + + S ++ G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK-P-NVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 417 YNCIINGLCKSGMVDMATEVFIELNEKGL 445
YN +I+G CK+G ++ A E+F E+ EKG+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 656 IVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFD 715
V +N+++ G EA L+ + + + +++ +I + L AK+
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 716 RMVLKGFKPSTRIYNS-FIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVS--AVINGFC 772
++ GF P + N+ +D Y K+G++E+A + P K +S A+I G+
Sbjct: 350 GLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRM------PRKNLISWNALIAGYG 402
Query: 773 QKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824
G A+ F +GV+P+ + FL ++ G E+ I + M +
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 727 RIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD 760
YN+ IDG CK G++EEA + ++K +EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 45/214 (21%), Positives = 92/214 (42%), Gaps = 20/214 (9%)
Query: 619 MDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRL 678
+D+V + +V + G + A ++ K N++++N +I G +A +
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEM 413
Query: 679 FDSLERIDMVPSEVSYATLIYNLCKEGQLLD-AKKLFDRMV-LKGFKPSTRIYNSFIDGY 736
F+ + + P+ V++ ++ + C+ L + ++F M KP Y I+
Sbjct: 414 FERMIAEGVAPNHVTFLAVL-SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472
Query: 737 CKFGQLEEAFKFLHDLKINCLEPDKFTVS---AVINGFCQKGDMEGALGFFLDFNTKGVS 793
+ G L+EA+ + P K TV+ A++ ++E LG G+
Sbjct: 473 GREGLLDEAYAMIRR------APFKPTVNMWAALLTACRIHKNLE--LGRLAAEKLYGMG 524
Query: 794 PDFLG-FLYLVKGLCTKGRMEEARSILREMLQSK 826
P+ L ++ L+ + GR EA ++ E L+ K
Sbjct: 525 PEKLNNYVVLLNLYNSSGRQAEAAKVV-ETLKRK 557
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 657 VTYNTVIHSLCRQGCFVEAFRLFDSLER 684
VTYN++I C+ G EA LF ++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 211 ITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADE 245
+TY +I G CK G++EEA +FK++++ G+ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 245 EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKP 278
Y L+ + + GD D A +LE+M+ G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 757 LEPDKFTVSAVINGFCQKGDMEGALGFF 784
L+PD T + +I+G C+ G ++ A+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 728 IYNSFIDGYCKFGQLEEAFKFLHDLK 753
YNS I GYCK G+LEEA + ++K
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 176 VSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206
V+Y L+ G+ K G +E+A+ + +M E +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 246 FVYATLIDGVCRRGDLDCAFRLLEDMEKKGI 276
Y +LI G C+ G L+ A L ++M++KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 176 VSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN 209
V+Y L+DG K G +E+A+ + +M E + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 42 GTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMS 74
G P T+ +L+ C G + AVE+L+ M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 121 VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155
V+Y +L+ LC GRV E ELF M+ G++ DV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 965 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.98 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.97 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.74 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.73 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.72 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.69 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.68 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.68 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.67 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.67 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.64 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.63 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.63 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.54 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.54 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.51 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.5 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.45 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.45 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.45 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.45 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.44 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.43 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.42 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.41 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.41 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.36 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.36 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.36 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.29 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.25 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.19 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.18 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.16 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.11 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.1 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.07 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.01 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 98.99 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.99 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 98.95 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.94 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.88 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.84 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.83 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.83 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.83 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.82 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.8 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.8 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.75 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.68 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.63 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.62 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.6 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.6 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.57 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.57 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.55 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.52 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.47 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.46 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.45 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.44 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.35 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.33 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.3 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.29 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.28 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.27 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.26 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.26 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.24 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.23 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.21 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.2 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.18 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.17 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.16 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.13 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.13 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.12 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.08 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.07 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.06 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.06 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.06 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.03 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.98 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.97 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.97 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.95 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.93 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.91 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.9 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.88 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.87 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.83 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.82 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.79 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.78 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.75 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.67 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.64 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.62 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.58 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.55 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.52 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.48 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.45 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.44 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.41 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.41 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.37 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.33 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.33 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.3 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.29 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.25 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.24 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.2 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.19 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.16 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.13 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.12 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.04 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.03 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.02 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.0 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.96 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.95 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 96.95 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.94 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 96.92 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.92 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.9 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.83 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.8 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.75 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.73 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.71 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.7 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.69 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.67 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.64 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.57 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.48 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.35 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.35 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.33 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.18 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.18 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.14 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.11 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.11 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.11 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.01 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.99 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.98 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.94 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.91 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.89 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.83 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.66 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.59 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.57 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.56 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.38 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.38 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.29 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.2 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.03 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.01 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.0 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.0 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.92 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.91 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.84 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.71 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.62 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 94.62 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.59 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.31 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.18 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.15 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.11 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.91 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.69 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.58 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.27 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.24 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.19 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 93.07 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 93.04 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.98 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 92.68 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 92.64 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.63 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 92.49 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 92.47 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.42 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.35 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.19 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.1 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.97 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.84 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.74 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.44 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.19 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.14 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 91.09 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 91.03 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.98 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 90.97 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 90.79 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.79 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.64 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.2 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.18 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.78 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.52 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 89.29 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 89.02 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 88.91 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.86 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 88.7 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 88.68 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.08 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.08 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.31 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 87.25 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 87.12 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 86.83 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.57 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.16 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.1 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 85.96 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.87 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.68 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.38 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.36 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.8 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.36 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.2 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.1 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 83.99 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 83.73 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 83.62 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 83.43 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.95 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.82 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.47 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.22 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 82.21 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 81.93 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.86 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 81.28 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.9 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 80.75 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 80.75 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 80.62 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.31 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-72 Score=662.64 Aligned_cols=669 Identities=17% Similarity=0.232 Sum_probs=589.4
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhh
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSC 160 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (965)
+++...++.++..+++.|++++|..+|+.+...+ ++|+..+|..++.++.+.+..+.|..++..+.+.++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------- 117 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP--------- 117 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC---------
Confidence 5566778889999999999999999999988765 788888898899988888999999999988886543
Q ss_pred HHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 161 WICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
.++...+|.++..|.+.|+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...|
T Consensus 118 -----------~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 118 -----------SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred -----------CCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 5778888999999999999999999999985 4688899999999999999999999999999889
Q ss_pred CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCC-CCHHHHHHHHHH
Q 046930 241 LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGIL-GDVVTYSTLLHG 319 (965)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~l~~~ 319 (965)
+.||..||+.++.+|...++++.+.+++..|.+.|+.||..+++.++.+|.+.|+++.|..+|+.++ +|..+|+.++.+
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~ 262 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998874 788999999999
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHH
Q 046930 320 YIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEA 399 (965)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 399 (965)
|.+.|++++|+++|++|...|+.||..+|+.++.+|.+.|+.+.|.+++..+.+.|+.||..+++.++.+|++.|++++|
T Consensus 263 ~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 342 (857)
T PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcc
Q 046930 400 LEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLR 479 (965)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~ 479 (965)
.++|++|.. ++..+|+.++.+|.+.|++++|+++|++|.+.|+.||..++..++.+|.+.|+.+.+.+++..+.+.+
T Consensus 343 ~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 343 EKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 999999864 57889999999999999999999999999999999999999999999888888888877777777777
Q ss_pred cccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHH
Q 046930 480 SEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKF 559 (965)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (965)
...+..+++.++.+|++.|++++|.++|++|.+
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------------------------------------------- 452 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPE----------------------------------------------- 452 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----------------------------------------------
Confidence 777777777777777777777777777776543
Q ss_pred HHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHH
Q 046930 560 LVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNK 639 (965)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 639 (965)
+|..+|+.++.+|++.|+.++
T Consensus 453 -----------------------------------------------------------~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 453 -----------------------------------------------------------KDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred -----------------------------------------------------------CCeeeHHHHHHHHHHCCCHHH
Confidence 357788999999999999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 046930 640 ALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVL 719 (965)
Q Consensus 640 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (965)
|+.+|++|.. +.+||..||+.++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+.+
T Consensus 474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-- 550 (857)
T PLN03077 474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-- 550 (857)
T ss_pred HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--
Confidence 9999999975 4888999999999999999999999999999999898899899999999999999999999988876
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH-hCCCCCChHH
Q 046930 720 KGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFN-TKGVSPDFLG 798 (965)
Q Consensus 720 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~ 798 (965)
.||..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+
T Consensus 551 ---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 551 ---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 578889999999999999999999999999988899999999999999999999999999999997 5788999989
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccc
Q 046930 799 FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFG 878 (965)
Q Consensus 799 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 878 (965)
|..++.+|++.|+++||.+++++|. ..|+...|..|+.++...|+.+.|+...+++.
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m~-------------~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~---------- 684 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMP-------------ITPDPAVWGALLNACRIHRHVELGELAAQHIF---------- 684 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----------
Confidence 9999999999999999999888772 46788888888888888888888887776641
Q ss_pred hhhhhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHH
Q 046930 879 TDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEM 957 (965)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~ 957 (965)
+. .|+...+|.++.. |.+.|+|++|.+..+.+
T Consensus 685 ---------------------------------------------~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 685 ---------------------------------------------EL--DPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred ---------------------------------------------hh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11 4667777777766 88888898888888877
Q ss_pred hc
Q 046930 958 LS 959 (965)
Q Consensus 958 ~~ 959 (965)
-+
T Consensus 718 ~~ 719 (857)
T PLN03077 718 RE 719 (857)
T ss_pred HH
Confidence 54
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-72 Score=659.81 Aligned_cols=656 Identities=19% Similarity=0.271 Sum_probs=611.5
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
+.+...++.++..+ ...|++++|+.+|+. +...|.+|+..++..++..|.+.+.++.+..++..+.+.+. .++...
T Consensus 48 ~~~~~~~n~~i~~l-~~~g~~~~A~~l~~~-m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 123 (857)
T PLN03077 48 SSSTHDSNSQLRAL-CSHGQLEQALKLLES-MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP--SLGVRL 123 (857)
T ss_pred ccchhhHHHHHHHH-HhCCCHHHHHHHHHH-HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC--CCCchH
Confidence 34556789999998 689999999999999 45578899999999999999999999999999999999886 678889
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh--
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG-- 164 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~-- 164 (965)
++.++..|.+.|+.+.|.++|++|. +||..+|+.++.+|++.|++++|..+|++|...|+.||.+||++++..
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 9999999999999999999999985 589999999999999999999999999999999999999999988753
Q ss_pred -------------hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 046930 165 -------------QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFT 231 (965)
Q Consensus 165 -------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 231 (965)
.+.+.|+.||+.+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHH
Confidence 67788999999999999999999999999999999995 4689999999999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC-CCCH
Q 046930 232 VFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI-LGDV 310 (965)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~ 310 (965)
+|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|.+.|++++|.++|+.+ .+|.
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 354 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 4899
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHH
Q 046930 311 VTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGY 390 (965)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (965)
.+|+.++.+|.+.|++++|+++|++|.+.++.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+++.|+.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHH
Q 046930 391 CKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLN 470 (965)
Q Consensus 391 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~ 470 (965)
++.|++++|.++|++|.+ ++..+|+.++.+|++.|+.++|+.+|++|.. ++.||..++..++.+|
T Consensus 435 ~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~----------- 499 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC----------- 499 (857)
T ss_pred HHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH-----------
Confidence 999999999999999865 4778999999999999999999999999986 5899999998888875
Q ss_pred HHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcC
Q 046930 471 FVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENG 550 (965)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (965)
.+.|..+.+.+++..+.+.|..
T Consensus 500 ------------------------~~~g~l~~~~~i~~~~~~~g~~---------------------------------- 521 (857)
T PLN03077 500 ------------------------ARIGALMCGKEIHAHVLRTGIG---------------------------------- 521 (857)
T ss_pred ------------------------hhhchHHHhHHHHHHHHHhCCC----------------------------------
Confidence 5667788888888888776643
Q ss_pred CCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHH
Q 046930 551 LVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAA 630 (965)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (965)
.|...+++++.+
T Consensus 522 --------------------------------------------------------------------~~~~~~naLi~~ 533 (857)
T PLN03077 522 --------------------------------------------------------------------FDGFLPNALLDL 533 (857)
T ss_pred --------------------------------------------------------------------ccceechHHHHH
Confidence 357788999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHH
Q 046930 631 LCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDA 710 (965)
Q Consensus 631 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 710 (965)
|++.|++++|..+|+.+ .+|..+|++++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|
T Consensus 534 y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 99999999999999987 4699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 711 KKLFDRMV-LKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 711 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|++|+.+|..+|+.+.+....+++.+
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 99999999 56999999999999999999999999999999995 699999999999999999999999999999865
Q ss_pred CCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 790 KGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 790 ~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
+.|+... |..|.+.|...|+|++|.++.+.|.+.+
T Consensus 686 --l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 686 --LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred --hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 7887766 7778899999999999999999999864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-59 Score=534.66 Aligned_cols=542 Identities=20% Similarity=0.265 Sum_probs=326.3
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhh
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSC 160 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (965)
+.+...+..+...+++.|++++|+++|++|...+.++++...+..++.+|.+.|..++|..+|+.|.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~------------- 433 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR------------- 433 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------------
Confidence 3445556666677777777777777777777665445566666667777777777777777776664
Q ss_pred HHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 161 WICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+.++|.++|++|.+.|
T Consensus 434 -----------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G 502 (1060)
T PLN03218 434 -----------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502 (1060)
T ss_pred -----------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 267777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC-------CCCCHHHH
Q 046930 241 LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG-------ILGDVVTY 313 (965)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~~~~~~ 313 (965)
+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++.. +.||..+|
T Consensus 503 v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy 582 (1060)
T PLN03218 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 77777777777777777777777777777777777777777777777777766666666655431 23344444
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHc
Q 046930 314 STLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKL 393 (965)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (965)
+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~ 662 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 44444444444444444444455555555555555555555555555555555555555555455555555555555555
Q ss_pred CCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHH
Q 046930 394 GRIEEALEIFDELRRM-SISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFV 472 (965)
Q Consensus 394 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~ 472 (965)
|++++|.++|++|.+. ..++..+|+.++.+|++.|++++|.++|++|...|+.|+..+|+.++.
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~--------------- 727 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT--------------- 727 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---------------
Confidence 5555555555555444 233444555555555555555555555555544444444433333332
Q ss_pred HHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCC
Q 046930 473 YRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLV 552 (965)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (965)
.|++.|++++|.++|++|...|..
T Consensus 728 --------------------gy~k~G~~eeAlelf~eM~~~Gi~------------------------------------ 751 (1060)
T PLN03218 728 --------------------ALCEGNQLPKALEVLSEMKRLGLC------------------------------------ 751 (1060)
T ss_pred --------------------HHHHCCCHHHHHHHHHHHHHcCCC------------------------------------
Confidence 234445555555555555443322
Q ss_pred chHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHH
Q 046930 553 EPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALC 632 (965)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (965)
+|..+|+.++.+|+
T Consensus 752 ------------------------------------------------------------------Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 752 ------------------------------------------------------------------PNTITYSILLVASE 765 (1060)
T ss_pred ------------------------------------------------------------------CCHHHHHHHHHHHH
Confidence 23555555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHH
Q 046930 633 REGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKK 712 (965)
Q Consensus 633 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 712 (965)
+.|++++|.++|++|.+.|+.||..+|+.++..|. +++++|.++.+.+...+ + .......+..++|+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSWALM 833 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHHHHH
Confidence 55555555555555555555555555555543332 13344433333322210 0 000011122356777
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC
Q 046930 713 LFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGV 792 (965)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 792 (965)
+|++|++.|+.||..+|+.++.+++..+..+.+..+++.|...+..|+..+|++|+.++.+. .++|..++++|.+.|+
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 78888877778887788777777777777777777777777666677777788887776322 3578888888877777
Q ss_pred CCChH
Q 046930 793 SPDFL 797 (965)
Q Consensus 793 ~p~~~ 797 (965)
.|+..
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 77764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=530.67 Aligned_cols=544 Identities=18% Similarity=0.231 Sum_probs=379.5
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046930 117 KPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVG 196 (965)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 196 (965)
.++...|..+...+++.|++++|.++|++|.+.++ +.++..+++.++..|.+.|.+++|..
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv-------------------v~~~~v~~~~li~~~~~~g~~~eAl~ 427 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL-------------------LDMDKIYHAKFFKACKKQRAVKEAFR 427 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC-------------------CCchHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566777777788888888888888888876543 24567777788888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046930 197 ILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGI 276 (965)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 276 (965)
+|+.|.. ||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+
T Consensus 428 lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv 503 (1060)
T PLN03218 428 FAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503 (1060)
T ss_pred HHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC
Confidence 8888753 788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 046930 277 KPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALF 356 (965)
Q Consensus 277 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (965)
.||..+|+.+|.+|++.|++++|.+ +|+.|...++.||..+|+.++.+|+
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~------------------------------lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFG------------------------------AYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHH------------------------------HHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 8888888888888777766665554 5556666777777777777777777
Q ss_pred hcCCHHHHHHHHHHchh--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChHHH
Q 046930 357 MVGALEDARALYQAMPE--MNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMS-ISSVACYNCIINGLCKSGMVDMA 433 (965)
Q Consensus 357 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 433 (965)
+.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|++|.+.+ +++..+|+.++.+|++.|++++|
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 77777777777777754 4566777777777777777777777777777777764 45677777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 046930 434 TEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKR 513 (965)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 513 (965)
.++|++|.+.|+.||..+|..++.+|.+.|+.++|.+++..|.+.+......+|+.++.+|++.|++++|.++|++|...
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 77777777777777777666666654333333333333333332222222223333333344555555555555554443
Q ss_pred CCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHH
Q 046930 514 GSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVL 593 (965)
Q Consensus 514 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 593 (965)
|..
T Consensus 714 g~~----------------------------------------------------------------------------- 716 (1060)
T PLN03218 714 KLR----------------------------------------------------------------------------- 716 (1060)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 321
Q ss_pred HHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHH
Q 046930 594 KKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFV 673 (965)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 673 (965)
+|..+|+.|+.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+++
T Consensus 717 -------------------------PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 717 -------------------------PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred -------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 2455666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 046930 674 EAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLK 753 (965)
Q Consensus 674 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 753 (965)
+|.++|.+|.+.|+.||..+|+.++..|. +++++|.++.+.+..- .+ +......+..++|..+|++|.
T Consensus 772 ~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f--~~--------g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 772 VGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF--DS--------GRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh--hc--------cccccccchHHHHHHHHHHHH
Confidence 66666666666666666666666654433 1344444443333221 00 001111234578999999999
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcch
Q 046930 754 INCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVL 829 (965)
Q Consensus 754 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 829 (965)
+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|..|+.++.+. .++|..++++|.+.+-.+
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 99999999999999988889999999999999987677888899999999998432 468999999999876443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=511.99 Aligned_cols=872 Identities=11% Similarity=0.046 Sum_probs=742.0
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
+...+...+..+ ..+|+++.|+..|+++++.. |.++..+..++.++...|++++|...|+++.+.+ |++...+.
T Consensus 21 ~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 94 (899)
T TIGR02917 21 SPESLIEAAKSY-LQKNKYKAAIIQLKNALQKD--PNDAEARFLLGKIYLALGDYAAAEKELRKALSLG---YPKNQVLP 94 (899)
T ss_pred CHHHHHHHHHHH-HHcCChHhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CChhhhHH
Confidence 455677777877 79999999999999999865 5678889999999999999999999999999988 67788889
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++.++...|++++|+..+.+..... .+.....+..++.++...|++++|...|+++.+..+
T Consensus 95 ~~a~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----------------- 156 (899)
T TIGR02917 95 LLARAYLLQGKFQQVLDELPGKTLLD-DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP----------------- 156 (899)
T ss_pred HHHHHHHHCCCHHHHHHhhcccccCC-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------
Confidence 99999999999999999998775322 244566888999999999999999999999987642
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVY 248 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 248 (965)
.+..++..++..+...|++++|..+++++.+..+ ++...+..+...+...|++++|...|+++.+.. +.+..++
T Consensus 157 ----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 230 (899)
T TIGR02917 157 ----RSLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVL 230 (899)
T ss_pred ----CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence 3566788899999999999999999999988754 478888899999999999999999999999876 5677888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcC
Q 046930 249 ATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEED 324 (965)
Q Consensus 249 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~ 324 (965)
..++..+...|++++|...++.+.+.... +...+......+...|++++|...+... +.+...+..+...+...|
T Consensus 231 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g 309 (899)
T TIGR02917 231 LALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG 309 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Confidence 88999999999999999999999887443 4445555566778899999999988643 344556667778889999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046930 325 NVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFD 404 (965)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 404 (965)
++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..++..+...|++++|.+.|+
T Consensus 310 ~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 387 (899)
T TIGR02917 310 NLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLA 387 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998875 3456777888899999999999999999998765 4567788899999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccch
Q 046930 405 ELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYD 484 (965)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (965)
++.+..|.+...+..++..+...|++++|+..++.+...... .......+...+.+.|+.+++...+.++....|.. .
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 465 (899)
T TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN-A 465 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-c
Confidence 999999999999999999999999999999999999886422 23344556678889999999999999998776654 4
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHH
Q 046930 485 IICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYL 564 (965)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (965)
.++..++..+...|++++|...|+++.+..+ .+...+..+...+...|+.+.+...+..++...+.....+..++..+.
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 6788899999999999999999999987553 234567778888899999999999999999999998899999999999
Q ss_pred hhhcHHHHHHHHHhhhhcCc-cccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 046930 565 CLNDVTNALLFIKNMKEISS-TVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDL 643 (965)
Q Consensus 565 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 643 (965)
..|++++|+.+++++...++ +......++..+...|+.++|...+..+....|. +...|..++.++...|++++|+..
T Consensus 545 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999877554 4455567788999999999999999998776654 688999999999999999999999
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 046930 644 CAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFK 723 (965)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (965)
|+.+.+.. +.+...+..++.++.+.|++++|...|+++.+.. +.+..++..++..+...|++++|.++++.+.+.. +
T Consensus 624 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 624 FKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 99998874 3477789999999999999999999999999854 3447889999999999999999999999999874 6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC-hHHHHHH
Q 046930 724 PSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPD-FLGFLYL 802 (965)
Q Consensus 724 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 802 (965)
++...+..++.++...|++++|...|+++... .|+..++..++.++...|++++|++.++++++ ..|+ ...+..+
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~l 776 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTAL 776 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 67888899999999999999999999999985 67667888899999999999999999999976 3454 4558889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhh
Q 046930 803 VKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDR 881 (965)
Q Consensus 803 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 881 (965)
+..+...|++++|...|+++++. .| ++..+..++..+.+.|+ ++|+..++++..... ....
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~------------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~---- 838 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKK------------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPA---- 838 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcH----
Confidence 99999999999999999999984 33 34456777778889999 889999999765422 1111
Q ss_pred hhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHhhhccchHHHHHHHHHHHhc
Q 046930 882 AIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVASFCSKGELQKANKLMKEMLS 959 (965)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 959 (965)
....++..+...|++++|+..++++++.. |.+..++++++..|.+.|++++|++++++++.
T Consensus 839 ----------------~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 839 ----------------ILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 11233556778899999999999999998 66777777776679999999999999999874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=495.21 Aligned_cols=846 Identities=12% Similarity=0.046 Sum_probs=717.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
++...+...+..+...|++++|+..|++.++.+ |.++.++..++.++.+.|++++|+..|+++...+ +++.....
T Consensus 20 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 94 (899)
T TIGR02917 20 QSPESLIEAAKSYLQKNKYKAAIIQLKNALQKD---PNDAEARFLLGKIYLALGDYAAAEKELRKALSLG--YPKNQVLP 94 (899)
T ss_pred CCHHHHHHHHHHHHHcCChHhHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CChhhhHH
Confidence 366677788899999999999999999999988 8899999999999999999999999999999876 56667778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.++.++...|++++|...+.+..... .+.....+..+...+...|++++|...|+++++.
T Consensus 95 ~~a~~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 154 (899)
T TIGR02917 95 LLARAYLLQGKFQQVLDELPGKTLLD--------------------DEGAAELLALRGLAYLGLGQLELAQKSYEQALAI 154 (899)
T ss_pred HHHHHHHHCCCHHHHHHhhcccccCC--------------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88999999999999999987664211 1245677888889999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 046930 205 RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYN 284 (965)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 284 (965)
.+. +...+..++..+...|++++|..+++++.+.. +++...+..+...+...|++++|...|++.....+ .+..++.
T Consensus 155 ~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~ 231 (899)
T TIGR02917 155 DPR-SLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLL 231 (899)
T ss_pred CCC-ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHH
Confidence 654 67788889999999999999999999998875 56778888889999999999999999999988754 3677888
Q ss_pred HHHHHHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 046930 285 TIINGLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGA 360 (965)
Q Consensus 285 ~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 360 (965)
.++..+...|++++|...+..+ +.+...+......+...|++++|+..++.+.+.++. ....+..+...+...|+
T Consensus 232 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~ 310 (899)
T TIGR02917 232 ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGN 310 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCC
Confidence 9999999999999999887643 455556666667778899999999999999887633 34455566778889999
Q ss_pred HHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046930 361 LEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIEL 440 (965)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (965)
+++|...++.+.+.. +.+...+..++..+...|++++|+..+.++....+.+...+..++..+...|++++|...|+++
T Consensus 311 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 389 (899)
T TIGR02917 311 LEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA 389 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998864 4456678888999999999999999999999998889999999999999999999999999999
Q ss_pred HHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchh
Q 046930 441 NEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQ 520 (965)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 520 (965)
.+.. +.+...+..+...+...|+.++|...+.++....+... .....++..+.+.|++++|...++.+.... +.+..
T Consensus 390 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 466 (899)
T TIGR02917 390 TELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG-RADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNAS 466 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcH
Confidence 8763 33455666677778889999999999999988776543 345567788999999999999999987743 34566
Q ss_pred cHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCc-cccchHHHHHHHHhc
Q 046930 521 SYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISS-TVTIPVNVLKKLLKA 599 (965)
Q Consensus 521 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 599 (965)
.+..+...+...|+++.+...+...++..+........++..+...|++++|+..++++....+ +......+...+...
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence 8888899999999999999999999999999889999999999999999999999999887655 455556777888999
Q ss_pred CCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHH
Q 046930 600 GSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLF 679 (965)
Q Consensus 600 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 679 (965)
|+.++|...+..+....| .+...+..++..+.+.|++++|+.+++.+.+.. +.+..+|..++.+|...|++++|+..|
T Consensus 547 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999876654 467888999999999999999999999998764 457889999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 046930 680 DSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP 759 (965)
Q Consensus 680 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 759 (965)
+++.+.. +.+...+..++.++...|++++|.++|+++.+. .+.+..++..++.++...|++++|..+++.+.+.. ++
T Consensus 625 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 701 (899)
T TIGR02917 625 KKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PK 701 (899)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 9999854 345778889999999999999999999999985 35568899999999999999999999999999863 44
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc
Q 046930 760 DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV 839 (965)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 839 (965)
+...+..++..+...|++++|++.|+++.+ ..|+...+..++.++.+.|++++|.+.++++++..+ .
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-----------~ 768 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-----------N 768 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------C
Confidence 677888899999999999999999999976 567777788899999999999999999999998422 2
Q ss_pred ccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhhhhhhhhhccccccccccccccccCccccccccc
Q 046930 840 ESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNY 919 (965)
Q Consensus 840 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (965)
+...+..++..+...|++++|++.|+++....++.... ...+++.+...|+ .+|+..+
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---------------------~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV---------------------LNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH---------------------HHHHHHHHHhcCc-HHHHHHH
Confidence 34466667778889999999999999987653322111 2233455566777 7799999
Q ss_pred ccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhcccccCC
Q 046930 920 HNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLSSFKEDS 965 (965)
Q Consensus 920 ~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~~~~~ 965 (965)
++++... |+.+..+..++. |...|++++|++.|+++++..|+|.
T Consensus 827 ~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 871 (899)
T TIGR02917 827 EKALKLA--PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871 (899)
T ss_pred HHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Confidence 9999877 555555555555 9999999999999999999999763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=489.99 Aligned_cols=467 Identities=17% Similarity=0.287 Sum_probs=382.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046930 211 ITYTAIIFGFCKKGKLEEAFTVFKKVEDLG-LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIING 289 (965)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 289 (965)
.+|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.++.+.++++.+.+++..|.+.|+.||..+++.++.+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 344444444444444444444444444332 3344444444444444444444444444444444444444444444444
Q ss_pred HHhcCCcchHHHHHcCCC-CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046930 290 LCKVGRTSDAEEVSKGIL-GDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALY 368 (965)
Q Consensus 290 ~~~~g~~~~a~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 368 (965)
|.+.|+++.|.++|+.++ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++...|..+.+.+++
T Consensus 168 y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred HhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 444444444444444442 4555555666666666677777788889999999999999999999999999999999999
Q ss_pred HHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 046930 369 QAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLY 448 (965)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (965)
..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.. ++..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999998854 5889999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHH
Q 046930 449 VGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKG 528 (965)
Q Consensus 449 ~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (965)
..++..++.+ |++.|++++|.+++..|.+.|..
T Consensus 325 ~~t~~~ll~a-----------------------------------~~~~g~~~~a~~i~~~m~~~g~~------------ 357 (697)
T PLN03081 325 QFTFSIMIRI-----------------------------------FSRLALLEHAKQAHAGLIRTGFP------------ 357 (697)
T ss_pred HHHHHHHHHH-----------------------------------HHhccchHHHHHHHHHHHHhCCC------------
Confidence 9998888877 46778888899999888886643
Q ss_pred HHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHH
Q 046930 529 LDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKL 608 (965)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 608 (965)
T Consensus 358 -------------------------------------------------------------------------------- 357 (697)
T PLN03081 358 -------------------------------------------------------------------------------- 357 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 046930 609 VMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMV 688 (965)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 688 (965)
+|..++++++.+|++.|++++|.++|++|.+ ||..+||.|+.+|++.|+.++|+++|++|.+.|+.
T Consensus 358 ----------~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 358 ----------LDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred ----------CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3688899999999999999999999999864 59999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHH
Q 046930 689 PSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK-GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAV 767 (965)
Q Consensus 689 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 767 (965)
||..||+.++.+|.+.|.+++|.++|+.|.+. |+.|+..+|+.++++|++.|++++|.+++++|. +.|+..+|++|
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~L 500 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAAL 500 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHH
Confidence 99999999999999999999999999999874 999999999999999999999999999998874 68999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 768 INGFCQKGDMEGALGFFLDFNTKGVSPDF-LGFLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 768 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
+.+|...|+++.|..+++++. ++.|+. .+|..|+++|.+.|++++|.+++++|.+.+
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999994 577864 469999999999999999999999999865
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=486.35 Aligned_cols=472 Identities=21% Similarity=0.302 Sum_probs=385.9
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC 163 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~ 163 (965)
...|+.++..+.+.|++++|+++|+.+...+++.|+..+|+.++.++.+.++++.|.+++..|.+.|
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g------------- 153 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG------------- 153 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------------
Confidence 3478899999999999999999999998766677899999999999999999999999998888654
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 046930 164 GQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVA 243 (965)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 243 (965)
+.||..+|+.++.+|.+.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|
T Consensus 154 -------~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 154 -------FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred -------CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 57888999999999999999999999999985 4689999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhc
Q 046930 244 DEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEE 323 (965)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~ 323 (965)
+..+|+.++.++.+.|+.+.+.+++..+.+.|+.||..+++.|+.+|.+.|++++|.++|+.++
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---------------- 286 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---------------- 286 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----------------
Confidence 9999999999999999999999999999999999999999999999999888888888876552
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 046930 324 DNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIF 403 (965)
Q Consensus 324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 403 (965)
.+|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++
T Consensus 287 ------------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 287 ------------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred ------------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 23455555555556666666666666666655555566666666666666666666666666
Q ss_pred HHHHhcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhccccc
Q 046930 404 DELRRMS-ISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEI 482 (965)
Q Consensus 404 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~ 482 (965)
..+.+.+ +++..+++.++.+|++.|++++|.++|++|.+
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------------------------------------- 388 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---------------------------------------- 388 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------------
Confidence 6555542 33444555555555555555555555544421
Q ss_pred chhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHH
Q 046930 483 YDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQ 562 (965)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (965)
T Consensus 389 -------------------------------------------------------------------------------- 388 (697)
T PLN03081 389 -------------------------------------------------------------------------------- 388 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 046930 563 YLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALD 642 (965)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 642 (965)
+|..+|+.|+.+|++.|+.++|++
T Consensus 389 --------------------------------------------------------~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 389 --------------------------------------------------------KNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred --------------------------------------------------------CCeeeHHHHHHHHHHcCCHHHHHH
Confidence 246678888888899999999999
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 046930 643 LCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLER-IDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKG 721 (965)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (965)
+|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~ 489 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---P 489 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---C
Confidence 999999999999999999999999999999999999999986 688999999999999999999999999998765 5
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 046930 722 FKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP 794 (965)
Q Consensus 722 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 794 (965)
+.|+..+|+.|+.+|...|+++.|..+++++.+ +.|+ ..+|..|+.+|.+.|++++|.++++.|.+.|+.+
T Consensus 490 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 490 FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 789999999999999999999999999999876 4674 6789999999999999999999999999888754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=323.37 Aligned_cols=661 Identities=12% Similarity=0.018 Sum_probs=437.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH-----
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY----- 123 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----- 123 (965)
.....++.+...++.+.|.+.++++...+ |.++.++..++..+.+.|+.++|.+.++++.+.. |.+...+
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~---p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~ 104 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELID---PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTT 104 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHH
Confidence 35566777888899999999999999988 7889999999999999999999999999999876 4454432
Q ss_pred -----------HHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHH-HHHHHHHHHHhcCCH
Q 046930 124 -----------TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTV-SYTILLDGFSKEGTI 191 (965)
Q Consensus 124 -----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 191 (965)
..+++.+...|++++|++.|+++.+.++ |+.. ....+.......|+.
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p---------------------~~~~la~~y~~~~~~~~g~~ 163 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP---------------------PELDLAVEYWRLVAKLPAQR 163 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC---------------------CChHHHHHHHHHHhhCCccH
Confidence 3445567888999999999999886532 3322 111122223346899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 192 EKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
++|++.|+++.+..+. +...+..+...+...|++++|+..++++.... ..+...-..........+....+...+...
T Consensus 164 ~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~-~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~ 241 (1157)
T PRK11447 164 PEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP-AGRDAAAQLWYGQIKDMPVSDASVAALQKY 241 (1157)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC-CchHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence 9999999999987544 67778888888999999999999999987642 111111111111111223333344444433
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC---CCCCHH-HHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHH
Q 046930 272 EKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG---ILGDVV-TYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVM 347 (965)
Q Consensus 272 ~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 347 (965)
... .|+.. ....|...+.. ...+.. ........+...|++++|+..|+++++.. +.+...
T Consensus 242 l~~--~p~~~-------------~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a 305 (1157)
T PRK11447 242 LQV--FSDGD-------------SVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEA 305 (1157)
T ss_pred HHH--CCCch-------------HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 322 11111 11112222211 111111 11233556777888888888888888765 346777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCcc-cHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 046930 348 CNILIKALFMVGALEDARALYQAMPEMNLVA-NSV------------TYSTMIDGYCKLGRIEEALEIFDELRRMSISSV 414 (965)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 414 (965)
+..+...+.+.|++++|+..|++..+..... ... ........+.+.|++++|+..|+++.+..|.+.
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~ 385 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS 385 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 7888888888888888888888887654111 111 112235567788888899999888888888888
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHH
Q 046930 415 ACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVG-MHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISF 493 (965)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (965)
.++..++.++...|++++|++.|+++++. .|+.. .+..+...+ ..++
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~-~~~~----------------------------- 433 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLY-RQQS----------------------------- 433 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-HhcC-----------------------------
Confidence 88888888888888899999888888875 34432 222222222 2233
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHH
Q 046930 494 LCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNAL 573 (965)
Q Consensus 494 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 573 (965)
.++|...++.+...... ....... ......+...+..+...+++++|+
T Consensus 434 ------~~~A~~~l~~l~~~~~~----~~~~~~~----------------------~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 434 ------PEKALAFIASLSASQRR----SIDDIER----------------------SLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred ------HHHHHHHHHhCCHHHHH----HHHHHHH----------------------HhhhhHHHHHHHHHHHCCCHHHHH
Confidence 34444444332211100 0000000 000011222333444444555555
Q ss_pred HHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 046930 574 LFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGIT 653 (965)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 653 (965)
..|++..... |.++.++..++..|.+.|++++|+..++++.+..+
T Consensus 482 ~~~~~Al~~~----------------------------------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P- 526 (1157)
T PRK11447 482 ELQRQRLALD----------------------------------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP- 526 (1157)
T ss_pred HHHHHHHHhC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Confidence 5554443332 34677778888888888888888888888877533
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH---------hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 046930 654 VNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSE---------VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKP 724 (965)
Q Consensus 654 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 724 (965)
.+...+..+...+...++.++|+..++.+......++. ..+..+...+...|+.++|+++++. .++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 25555666666677788888888888776432222221 1233456778899999999999882 355
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHH
Q 046930 725 STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYL 802 (965)
Q Consensus 725 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l 802 (965)
+...+..++..+.+.|++++|+..|+++++. .| +..++..++.+|...|++++|++.++.+.+ ..|+... +..+
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~l 677 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRV 677 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHH
Confidence 6778889999999999999999999999984 67 567899999999999999999999998854 5666554 7778
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc---ccccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 046930 803 VKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV---ESESVLNFLISLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 803 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 869 (965)
+.++...|++++|.++|++++...+. ..| +...+..++..+...|++++|++.|++...
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~~~~--------~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQAKS--------QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhhCcc--------CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999874321 111 112344456677889999999999998753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=319.36 Aligned_cols=662 Identities=13% Similarity=0.022 Sum_probs=450.0
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH-----
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC----- 87 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----- 87 (965)
+..-...++...++++.|.+.+.+++... |.++.++..++..+...|+.++|.+.++++.+.+ |.++.+.
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~---P~~~~~~~~~~~ 104 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA---PDSNAYRSSRTT 104 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CCChHHHHHHHH
Confidence 33333445689999999999999988765 5678888999999999999999999999999998 5665543
Q ss_pred -----------HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCccch
Q 046930 88 -----------SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVS-YTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155 (965)
Q Consensus 88 -----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (965)
...+..+.+.|++++|++.|++++... ||+... ...........|++++|+..++++.+..|
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P---- 178 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP---- 178 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC----
Confidence 455678899999999999999999865 555432 11122223346999999999999998642
Q ss_pred hhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046930 156 VFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKK 235 (965)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 235 (965)
.+...+..+...+...|++++|++.|+++...... +...-..........+....+...+..
T Consensus 179 -----------------~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~ 240 (1157)
T PRK11447 179 -----------------GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQK 240 (1157)
T ss_pred -----------------CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHH
Confidence 45778889999999999999999999999764211 111111111111111222222222222
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHH
Q 046930 236 VEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVV 311 (965)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~ 311 (965)
. +..+-.....+.|...+.........|... .......+...|++++|+..|+.. |.+..
T Consensus 241 ~---------------l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~ 304 (1157)
T PRK11447 241 Y---------------LQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSE 304 (1157)
T ss_pred H---------------HHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 2 222212222344555555544432233322 123355666777777777776543 45677
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC-HHH------------HHHHHHHHHhcCCHHHHHHHHHHchhCCCcc
Q 046930 312 TYSTLLHGYIEEDNVNGILETKQRLEEAGIQMD-IVM------------CNILIKALFMVGALEDARALYQAMPEMNLVA 378 (965)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 378 (965)
++..+..++.+.|++++|+..|+++.+..+... ... .......+.+.|++++|...|+++.+.. +.
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~ 383 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NT 383 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 777777788888888888888888776653321 111 1223456778999999999999999875 45
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 046930 379 NSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQA 458 (965)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (965)
+..++..++.++...|++++|++.|+++.+..|.+..++..+...|. .++.++|+.+++.+.... +. ........
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~--~~--~~~~~~~~ 458 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQ--RR--SIDDIERS 458 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH--HH--HHHHHHHH
Confidence 66788889999999999999999999999999999999988888885 457899998887654321 10 00000000
Q ss_pred HHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhh
Q 046930 459 TFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLI 538 (965)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 538 (965)
+ ....+...+..+...|++++|+..|+++++..+
T Consensus 459 l-----------------------~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P----------------------- 492 (1157)
T PRK11447 459 L-----------------------QNDRLAQQAEALENQGKWAQAAELQRQRLALDP----------------------- 492 (1157)
T ss_pred h-----------------------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------------
Confidence 0 001334455667777777777777777666432
Q ss_pred hhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCC
Q 046930 539 GPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPC 618 (965)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 618 (965)
........++..+...|++++|+..++++.... |
T Consensus 493 ------------~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~----------------------------------P 526 (1157)
T PRK11447 493 ------------GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK----------------------------------P 526 (1157)
T ss_pred ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------------C
Confidence 122223344444444555555555555443322 2
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH---------HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 046930 619 MDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNI---------VTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVP 689 (965)
Q Consensus 619 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 689 (965)
.++..+..++..+...+++++|+..++.+......++. ..+..+...+...|++++|+.+++. .++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 23444444455555566666666666654332111111 1223456778899999999999872 244
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHH
Q 046930 690 SEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVI 768 (965)
Q Consensus 690 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 768 (965)
+...+..+...+.+.|++++|++.|+++++.. +.+...+..++.+|...|++++|++.++++.+. .|+ ..++..++
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la 678 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVA 678 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHH
Confidence 56677888999999999999999999999862 556889999999999999999999999998874 664 56778889
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCC--CC---ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 769 NGFCQKGDMEGALGFFLDFNTKGV--SP---DFLGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
.++...|++++|+++|++++...- .| +...+..++..+...|++++|+..|++++..
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999976321 12 1124666788999999999999999999863
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-29 Score=284.76 Aligned_cols=219 Identities=12% Similarity=-0.032 Sum_probs=130.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHcc
Q 046930 626 TIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKE 704 (965)
Q Consensus 626 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 704 (965)
.++..+...|++++|+..|+++... +|+...+..++.++.+.|++++|...++++++.+ |+ ...+..+...+...
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhC
Confidence 3344445667777777777665543 2333445555666666777777777777666643 32 22333333334445
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 046930 705 GQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGF 783 (965)
Q Consensus 705 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 783 (965)
|++++|+..|++.++. .|+...+..++.++.+.|++++|+..+++++.. .|+ ...++.++.++...|++++|++.
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777776653 455666666777777777777777777776663 553 44566666666677777777777
Q ss_pred HHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHH-HHHHhhhcCcHHHHH
Q 046930 784 FLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLN-FLISLCEQGSILEAI 861 (965)
Q Consensus 784 ~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~ 861 (965)
|+++++ +.|+... +..++.++...|++++|+..|+++++ ..|+...+.. .+..+....+++.|.
T Consensus 666 l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~------------l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 666 LERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID------------DIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------cCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 776654 5555443 66677777777777777777777766 4444433322 233344555566666
Q ss_pred HHHHH
Q 046930 862 AILDE 866 (965)
Q Consensus 862 ~~~~~ 866 (965)
+.+++
T Consensus 732 ~~~~r 736 (987)
T PRK09782 732 EEVGR 736 (987)
T ss_pred HHHHH
Confidence 65554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-28 Score=279.97 Aligned_cols=632 Identities=11% Similarity=0.014 Sum_probs=431.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
+...+..+...|++++|+..|+.+++.+ |.++.++..++.+|...|++++|+..++++++.+ |.|...+..+..+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~d---P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i 121 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQV---PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh
Confidence 3334444556699999999999999999 7889999999999999999999999999999976 4444444444322
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHH
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDG--------FSKEGTIEKAVGILNKM 201 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~ 201 (965)
+++++|..+|+++....+ .+..++..+... |.+. ++|.+.++ .
T Consensus 122 ----~~~~kA~~~ye~l~~~~P---------------------~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-l 172 (987)
T PRK09782 122 ----PVEVKSVTTVEELLAQQK---------------------ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-D 172 (987)
T ss_pred ----ccChhHHHHHHHHHHhCC---------------------CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-H
Confidence 999999999999998642 345555555554 5544 55555555 3
Q ss_pred HHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHhHHHHHHHHHHHCCCCCC
Q 046930 202 IEDRLRPNLITYTAI-IFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCR-RGDLDCAFRLLEDMEKKGIKPS 279 (965)
Q Consensus 202 ~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~~~ 279 (965)
....+.|+....... ..+|.+.|++++|+..+.++.+.+ +.+......|..+|.. .++ +.+..+++... .-+
T Consensus 173 r~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d 246 (987)
T PRK09782 173 ATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTD 246 (987)
T ss_pred hhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccC
Confidence 333345455555554 899999999999999999999987 4556667777788887 466 77877765422 347
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHcCCC------CCHHHHHHHHHHhhhcCChh-HHHHHHHHHHHcCCCCC-HHHHHHH
Q 046930 280 IVTYNTIINGLCKVGRTSDAEEVSKGIL------GDVVTYSTLLHGYIEEDNVN-GILETKQRLEEAGIQMD-IVMCNIL 351 (965)
Q Consensus 280 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~l 351 (965)
...+..++..|.+.|+.++|..++..++ |...+|..++. +.+... .|..-+.+ + ..++ ......+
T Consensus 247 ~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~ 319 (987)
T PRK09782 247 PQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS---KYSANPVQALANYTV--Q--FADNRQYVVGAT 319 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH---hccCchhhhccchhh--h--hHHHHHHHHHHH
Confidence 8889999999999999999999987664 33344433332 222221 11111111 0 0111 1122234
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChH
Q 046930 352 IKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVD 431 (965)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (965)
+..+.+.+.++-+.++.. +.|.......-.......+...++.+.++.+.+..|.+......+.....+.|+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~ 393 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSR 393 (987)
T ss_pred HHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHH
Confidence 677788888886665532 12322222111111223467778888888888877888888888888888899999
Q ss_pred HHHHHHHHHHHC-C-CCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHH---HHHHH
Q 046930 432 MATEVFIELNEK-G-LSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSE---VASEL 506 (965)
Q Consensus 432 ~A~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~ 506 (965)
+|..++++.... + ..++.....-+. ..|.+.+... .+..+
T Consensus 394 ~a~~~~~~~~~~~~~~~~~~~l~~~l~-----------------------------------~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 394 EAADLLLQRYPFQGDARLSQTLMARLA-----------------------------------SLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHhcCCCcccccCHHHHHHHH-----------------------------------HHHHhCCcccchHHHHHh
Confidence 999999888763 1 122222222333 3344444422 22211
Q ss_pred HHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccc
Q 046930 507 YMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTV 586 (965)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 586 (965)
-..+...+ -. .-. ++..++
T Consensus 439 ~~~~~~~~-------~~------~~~----------------------------------~~~~~~-------------- 457 (987)
T PRK09782 439 SKPLPLAE-------QR------QWQ----------------------------------SQLPGI-------------- 457 (987)
T ss_pred ccccccch-------hH------HHH----------------------------------hhhhhh--------------
Confidence 11111100 00 000 000000
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHhhhccCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 046930 587 TIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCM--DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIH 664 (965)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 664 (965)
..++..+...... .|+ +..+|..++.++.. ++.++|+..+.+..... |+......++.
T Consensus 458 ----------------~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~ 517 (987)
T PRK09782 458 ----------------ADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAY 517 (987)
T ss_pred ----------------hhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHH
Confidence 0011111111111 133 67888999988887 89999999888888763 45544445566
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 046930 665 SLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEE 744 (965)
Q Consensus 665 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 744 (965)
.+...|++++|+..|+++... .|+...+..+..++...|++++|.++|++.++.. +++...+..+...+...|++++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 667899999999999998664 3555556777788899999999999999999863 3344444444555556699999
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHH
Q 046930 745 AFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREML 823 (965)
Q Consensus 745 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~ 823 (965)
|+..++++++ +.|+...+..++.++.+.|++++|++.|+++++ +.|+... +..++.++...|++++|+.+|++++
T Consensus 595 Al~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 595 ALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998 478888899999999999999999999999966 7787666 8889999999999999999999999
Q ss_pred hcCcchhhhhccccccc-cccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 046930 824 QSKSVLELINRVDIEVE-SESVLNFLISLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 824 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 869 (965)
+ ..|+ +..+.+++..+...|++++|+..++++..
T Consensus 671 ~------------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 671 K------------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred H------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8 4553 45677888889999999999999998753
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-29 Score=248.77 Aligned_cols=439 Identities=14% Similarity=0.138 Sum_probs=297.5
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHH
Q 046930 313 YSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCK 392 (965)
Q Consensus 313 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (965)
...|.+-..+.|++.+|.+.-..+-..+ +.+....-.+...+.+..+++.....-....+.. +.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445555556677777776655554443 2222333334445566666666555444444332 2345678888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHH
Q 046930 393 LGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFV 472 (965)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~ 472 (965)
.|+++.|+..|+.+++..|....+|..++.++...|+.+.|...|.+.++. .|+.....+-+..
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn-------------- 192 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN-------------- 192 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH--------------
Confidence 899999999999888888888889999999998889888888888888865 5665544433333
Q ss_pred HHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCC
Q 046930 473 YRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLV 552 (965)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (965)
.+...|+..+|...|.++++.. +..
T Consensus 193 --------------------Llka~Grl~ea~~cYlkAi~~q-----------------------------------p~f 217 (966)
T KOG4626|consen 193 --------------------LLKAEGRLEEAKACYLKAIETQ-----------------------------------PCF 217 (966)
T ss_pred --------------------HHHhhcccchhHHHHHHHHhhC-----------------------------------Cce
Confidence 3445566666666666655421 111
Q ss_pred chHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHH
Q 046930 553 EPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALC 632 (965)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (965)
.-++..++..+...|+...|+..|++..... |.-..+|..|+..|-
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkld----------------------------------P~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD----------------------------------PNFLDAYINLGNVYK 263 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcCC----------------------------------CcchHHHhhHHHHHH
Confidence 2222333333333334444444443333322 234667778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCChHHHH
Q 046930 633 REGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKEGQLLDAK 711 (965)
Q Consensus 633 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 711 (965)
..+.+++|+..|.++.... +.....+..|...|..+|.++-|+..|++.++ +.|+ ...|+.|..++-..|+..+|.
T Consensus 264 e~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHH
Confidence 8888888888888777653 23556777778888888888888888888877 4566 677888888888888888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 046930 712 KLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTK 790 (965)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (965)
.+|++++.. .+.-..+.++|+.+|...|.+++|..+|....+ +.|. ....++|+..|-++|++++|+..|++++.
T Consensus 341 ~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr- 416 (966)
T KOG4626|consen 341 DCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR- 416 (966)
T ss_pred HHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-
Confidence 888888874 133356778888888888888888888888877 5776 45778888888888888888888888854
Q ss_pred CCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccccc-ccHHHHHHHhhhcCcHHHHHHHHHHHh
Q 046930 791 GVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVES-ESVLNFLISLCEQGSILEAIAILDEIG 868 (965)
Q Consensus 791 ~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 868 (965)
+.|+..- |.++++.|...|+.++|+..|.++++ +.|.. ++..+|+..+..+|+..+|++.|++.+
T Consensus 417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~------------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ------------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh------------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 7887765 78888888888888888888888887 55543 345566667778888888888888754
Q ss_pred hc-cCCCcccc
Q 046930 869 YM-LFPTQRFG 878 (965)
Q Consensus 869 ~~-~~~~~~~~ 878 (965)
.. +..++..|
T Consensus 484 klkPDfpdA~c 494 (966)
T KOG4626|consen 484 KLKPDFPDAYC 494 (966)
T ss_pred ccCCCCchhhh
Confidence 33 44444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-26 Score=241.39 Aligned_cols=442 Identities=15% Similarity=0.105 Sum_probs=281.0
Q ss_pred CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccH--HH
Q 046930 307 LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQ--MDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANS--VT 382 (965)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 382 (965)
+.|+.+.+.|...|...|++..++.+...+...... .-...|..+.++|...|++++|..+|.+..+.+ ++. ..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 455566666666666666666666666666554311 112456677888888888888888887776654 333 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 046930 383 YSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSG----MVDMATEVFIELNEKGLSLYVGMHKIILQA 458 (965)
Q Consensus 383 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (965)
+..++..+.+.|+++.+...|+++....|.+..+...++..|...+ ..+.|..++.+..+. .|...-.+..+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 5567777888888888888888888888888888888888777664 456677777666654 3444444444444
Q ss_pred HHHcCChhhHHHHHHHH----HhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCccch------hcHHHH
Q 046930 459 TFAKGGVGGVLNFVYRI----ENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKR---GSVVTD------QSYYSI 525 (965)
Q Consensus 459 ~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~l 525 (965)
+...++....+..+..+ ......++..+.|.++..++..|.+..|...|..+... ...++. ..-+.+
T Consensus 423 l~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 423 LLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 44445544445555443 33444477789999999999999999999999887665 122222 134556
Q ss_pred HHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHH-HHHhcCCHHH
Q 046930 526 LKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLK-KLLKAGSVLD 604 (965)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 604 (965)
.+..-..++...+......+++.||...+++.+++......++..+|..+++.....+...+...+++. .++....+.-
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcc
Confidence 666666778888888999999999998888888886666678899999999998877664444444444 4444444444
Q ss_pred HHHHHHhhhcc-CCCCchhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc
Q 046930 605 VYKLVMGAEDS-LPCMDVVDYSTIVAALCR------------EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGC 671 (965)
Q Consensus 605 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 671 (965)
|..-+....+. ....|+.+.-+|++.|.+ .+..++|+++|.+++...+. |..+-|.++-+++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccC
Confidence 44322222111 111344444555554432 12345666666666665333 56666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 046930 672 FVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK-GFKPSTRIYNSFIDGYCKFGQLEEAFKFLH 750 (965)
Q Consensus 672 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 750 (965)
+.+|+.+|.+..+.. .....+|..+.++|..+|++..|+++|+...+. .-..+..+...|+.++.++|++.+|.+.+.
T Consensus 662 ~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 662 FSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred chHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666666666666543 123455666666666666666666666666654 323355666666666666666666666666
Q ss_pred Hhhh
Q 046930 751 DLKI 754 (965)
Q Consensus 751 ~~~~ 754 (965)
.+..
T Consensus 741 ~a~~ 744 (1018)
T KOG2002|consen 741 KARH 744 (1018)
T ss_pred HHHH
Confidence 6655
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-25 Score=231.62 Aligned_cols=568 Identities=12% Similarity=0.057 Sum_probs=413.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHH
Q 046930 191 IEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLED 270 (965)
Q Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 270 (965)
++.|.+.|...++..+ +|...+---.......|++..|+.+|..+...+..--+.....+..++.+.|+.+.|...|..
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 6899999999988753 366666555666777889999999999977654322222333445677899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 046930 271 MEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNI 350 (965)
Q Consensus 271 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 350 (965)
..+.++. ++.++..|...-.... ....+..+...+....... +.++...+.
T Consensus 225 alqLdp~-~v~alv~L~~~~l~~~---------------------------d~~s~~~~~~ll~~ay~~n-~~nP~~l~~ 275 (1018)
T KOG2002|consen 225 ALQLDPT-CVSALVALGEVDLNFN---------------------------DSDSYKKGVQLLQRAYKEN-NENPVALNH 275 (1018)
T ss_pred HHhcChh-hHHHHHHHHHHHHHcc---------------------------chHHHHHHHHHHHHHHhhc-CCCcHHHHH
Confidence 9987331 2222222222111111 1133445555555554443 457788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhc
Q 046930 351 LIKALFMVGALEDARALYQAMPEMNLV--ANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISS-VACYNCIINGLCKS 427 (965)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 427 (965)
|.+.|.-.|+++.++.+...+...... .-+..+..++++|-..|++++|...|-+..+..+.+ .-.+..++.+|...
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 999999999999999999988764311 123468899999999999999999999999987776 77889999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-HHcC----ChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHH
Q 046930 428 GMVDMATEVFIELNEKGLSLYVGMHKIILQAT-FAKG----GVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEV 502 (965)
Q Consensus 428 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (965)
|+++.+...|+.+.+. .|+..-...++..+ ...+ ..+.|..++.+.....+. +...|-.+..++....-+..
T Consensus 356 ~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~s 432 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWAS 432 (1018)
T ss_pred chHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHHH
Confidence 9999999999999987 56655555555443 3332 335555666665555432 23455555555444333333
Q ss_pred HHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhc
Q 046930 503 ASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEI 582 (965)
Q Consensus 503 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 582 (965)
+..|..++. ++. ...+.+.+.++..++..++..|++.+|...|++....
T Consensus 433 -L~~~~~A~d----------------------------~L~--~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 433 -LDAYGNALD----------------------------ILE--SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred -HHHHHHHHH----------------------------HHH--HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 555554432 000 1122344556778888888889999999888876543
Q ss_pred -----------CccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046930 583 -----------SSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKG 651 (965)
Q Consensus 583 -----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 651 (965)
...++.-++++..+-..++.+.|.+.+..+....|. -...|.-++.+-...+...+|...+......+
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 112344678888888888999999999888887765 46777777755566788999999999988774
Q ss_pred CcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHc------------cCChHHHHHHHHHHH
Q 046930 652 ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI-DMVPSEVSYATLIYNLCK------------EGQLLDAKKLFDRMV 718 (965)
Q Consensus 652 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~ 718 (965)
..++..+..++..+.+...+..|.+-|....+. ...+|+.+..+|...|.. .+..++|+++|.+++
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 347778888898999999999999988777653 223677777788776643 345788999999999
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-CChH
Q 046930 719 LKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVS-PDFL 797 (965)
Q Consensus 719 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~ 797 (965)
+.. +-|...-|.++.+++..|++.+|..+|.++.+.. .-+..+|.+++.+|...|+|-.|+++|+.....-.. .+..
T Consensus 640 ~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 640 RND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred hcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 863 5688888999999999999999999999999862 345678999999999999999999999998664333 3445
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 798 GFLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 798 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
....|+.++++.|++.+|...+..++...
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 58899999999999999999999998743
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-27 Score=234.61 Aligned_cols=380 Identities=18% Similarity=0.184 Sum_probs=302.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046930 345 IVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGL 424 (965)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (965)
..+|..+.+.+-..|++++|+.+++.+++.. +.....|..+..++...|+.+.|...|.+.++.+|....+...++..+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 4577777777777888888888888777754 234557777888888888888888888888877777777777777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHH
Q 046930 425 CKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVAS 504 (965)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 504 (965)
...|+..+|...|.+.++. .|.. ..+|..++-.+...|+...|+
T Consensus 195 ka~Grl~ea~~cYlkAi~~--qp~f----------------------------------AiawsnLg~~f~~~Gei~~ai 238 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIET--QPCF----------------------------------AIAWSNLGCVFNAQGEIWLAI 238 (966)
T ss_pred HhhcccchhHHHHHHHHhh--CCce----------------------------------eeeehhcchHHhhcchHHHHH
Confidence 7778888888877777764 2321 135556666666677777777
Q ss_pred HHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCc
Q 046930 505 ELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISS 584 (965)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 584 (965)
..|+++.+.+ |...+++..++..|-..+.+++|+..|.+.....
T Consensus 239 q~y~eAvkld-----------------------------------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 239 QHYEEAVKLD-----------------------------------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhcCC-----------------------------------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 7777665532 3345566666666666667777777666655433
Q ss_pred cccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 046930 585 TVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIH 664 (965)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 664 (965)
|.+..++-.++..|..+|.+|-|+..|++.++..+. -..+|+.|..
T Consensus 283 ---------------------------------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nlan 328 (966)
T KOG4626|consen 283 ---------------------------------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLAN 328 (966)
T ss_pred ---------------------------------CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHH
Confidence 346777888888999999999999999999987322 4579999999
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCH
Q 046930 665 SLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPS-TRIYNSFIDGYCKFGQL 742 (965)
Q Consensus 665 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 742 (965)
++-..|+..+|...|.+++... |+ +...+.|...|...|.+++|..+|...++- .|. ....++|+.+|-++|++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccH
Confidence 9999999999999999999854 66 788999999999999999999999999984 444 66889999999999999
Q ss_pred HHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHH
Q 046930 743 EEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILR 820 (965)
Q Consensus 743 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~ 820 (965)
++|+..|++++. +.|+ ..+|++++..|-..|+.+.|++.|.++++ +.|.... +.+|+..|...|++.+|+..|+
T Consensus 405 ~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 405 DDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999998 6997 57999999999999999999999999976 7888766 8899999999999999999999
Q ss_pred HHHhcCcchhhhhcccccccc-ccHHHHHHHh
Q 046930 821 EMLQSKSVLELINRVDIEVES-ESVLNFLISL 851 (965)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 851 (965)
++++ +.|+. +++.+++..+
T Consensus 481 ~aLk------------lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 481 TALK------------LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHc------------cCCCCchhhhHHHHHH
Confidence 9998 56654 4566676654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-21 Score=203.08 Aligned_cols=712 Identities=14% Similarity=0.091 Sum_probs=443.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
....+.++.+...|++++|.+++..+++.+ |.+..+|..++.+|-..|+.+++...+-.+-..+ |.|...|..+.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~la 214 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHH
Confidence 344555666667799999999999999999 8899999999999999999999999998888776 77888999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 046930 128 IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR 207 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (965)
....+.|++++|.-+|.++++..| ++...+..-+..|.+.|+...|.+.|.++....++
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p---------------------~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANP---------------------SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC---------------------cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 999999999999999999998753 56666666777899999999999999999987553
Q ss_pred CCHHHHH----HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 046930 208 PNLITYT----AIIFGFCKKGKLEEAFTVFKKVEDLG-LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVT 282 (965)
Q Consensus 208 ~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 282 (965)
.|..-+. ..+..+...++-+.|.+.++.....+ -..+...++.++..|.+...++.+......+.....++|..-
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 3333222 34556777777789999998887632 133455788888899999999999998888877555556554
Q ss_pred HHHHHHHHHhcCCcc-h-HHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhc
Q 046930 283 YNTIINGLCKVGRTS-D-AEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAG--IQMDIVMCNILIKALFMV 358 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~-~-a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 358 (965)
|..- ..++.+ . -..+=+....+..+ ..+.-++...+..+....+........ +..+...|.-+..+|...
T Consensus 354 ~~~~-----~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 354 WDTD-----ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI 427 (895)
T ss_pred hhhh-----hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc
Confidence 4210 011100 0 00111222334444 223333333333333333333444444 444567888999999999
Q ss_pred CCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 359 GALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFI 438 (965)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (965)
|++.+|+.+|..+.......+...|..++.+|...|.+++|++.|++++...|.+..+...|...+.+.|+.++|.+.+.
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 99999999999998875556678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCC--------CCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHH-HHHHHHHH
Q 046930 439 ELNEKG--------LSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSE-VASELYMF 509 (965)
Q Consensus 439 ~~~~~~--------~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~ 509 (965)
.+..-+ ..|+..........+...|+.++-++....+..... .+.-.+. .-.+-...
T Consensus 508 ~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~--------------~~~~~f~~~~k~r~~~ 573 (895)
T KOG2076|consen 508 QIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL--------------KKRYIFPRNKKKRRRA 573 (895)
T ss_pred cccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--------------HHHHhcchHHHHHHHh
Confidence 876221 223333333333333333433332222222111000 0000000 00000000
Q ss_pred HHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccch
Q 046930 510 MRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIP 589 (965)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 589 (965)
....+..........++.+..+.++.....
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~-------------------------------------------------- 603 (895)
T KOG2076|consen 574 IAGTTSKRYSELLKQIIRAREKATDDNVME-------------------------------------------------- 603 (895)
T ss_pred hccccccccchhHHHHHHHHhccCchHHhh--------------------------------------------------
Confidence 000001111111111111111111110000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhccCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc-cHH---HH-HHHH
Q 046930 590 VNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDV-VDYSTIVAALCREGYVNKALDLCAFAKNKGITV-NIV---TY-NTVI 663 (965)
Q Consensus 590 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~---~~-~~l~ 663 (965)
.....+.... ......+...|. ..+..++..+++.+++++|+.+...+.....-. +.. .. ...+
T Consensus 604 -----~~l~d~~~~~-----~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l 673 (895)
T KOG2076|consen 604 -----KALSDGTEFR-----AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGL 673 (895)
T ss_pred -----hcccchhhhh-----hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence 0000000000 000000111122 233566778889999999999988877653111 111 22 3345
Q ss_pred HHHHhcCcHHHHHHHHHHHHhC-CC--CCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 046930 664 HSLCRQGCFVEAFRLFDSLERI-DM--VPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKF 739 (965)
Q Consensus 664 ~~~~~~~~~~~A~~~~~~~~~~-~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 739 (965)
.+....+++..|.+.+..|+.. ++ .|. ...|+...+...+.++-.-=...+..+....-..++.....-+..+...
T Consensus 674 ~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~ 753 (895)
T KOG2076|consen 674 KASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVN 753 (895)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhc
Confidence 6677889999999999998864 11 222 3455545555555554333333333333322111233333444556678
Q ss_pred CCHHHHHHHHHHhhhCCCCCChh-HHHHHHHHHHh----------cCCHHHHHHHHHHhHhCCCCC-ChHHHHHHHHHHh
Q 046930 740 GQLEEAFKFLHDLKINCLEPDKF-TVSAVINGFCQ----------KGDMEGALGFFLDFNTKGVSP-DFLGFLYLVKGLC 807 (965)
Q Consensus 740 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 807 (965)
+.+.-|+..|-++... .||.. +-..++-++.. +-.+-+++.++.+..+....- --..+++++.+|-
T Consensus 754 ~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh 831 (895)
T KOG2076|consen 754 ASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYH 831 (895)
T ss_pred cchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 8999999988888774 77643 33333333321 122445677776665533221 2345888999999
Q ss_pred cCCCHHHHHHHHHHHHhcCcchhhhhcc-ccccccccHHHHHHHhhhcCcHHHHHHHHHHH
Q 046930 808 TKGRMEEARSILREMLQSKSVLELINRV-DIEVESESVLNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 808 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
..|-+.-|.++|++++...+.+-..... ..+...++.++|.-.|..+|+..-|.+++++.
T Consensus 832 ~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 832 QIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 9999999999999999975432111100 01122346788888899999999999998864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-20 Score=213.36 Aligned_cols=430 Identities=13% Similarity=-0.014 Sum_probs=296.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 046930 347 MCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCK 426 (965)
Q Consensus 347 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (965)
.+...+..+.+.|++++|+..|++.++. .|+...+..+..+|.+.|++++|+..++++++..|.+..+|..++.+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4556677888999999999999998875 47788889999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHH
Q 046930 427 SGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASEL 506 (965)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 506 (965)
.|++++|+..+..+...+ ..+......++..+.. ..+...........+.... .+..+.
T Consensus 207 lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~-~~~~~~--------------- 265 (615)
T TIGR00990 207 LGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETKPENLP-SVTFVG--------------- 265 (615)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCC-CHHHHH---------------
Confidence 999999999887776542 1111111111111110 0111111111111111100 000010
Q ss_pred HHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHH---HhhhcHHHHHHHHHhhhhcC
Q 046930 507 YMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQY---LCLNDVTNALLFIKNMKEIS 583 (965)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~A~~~~~~~~~~~ 583 (965)
.+............+.......+........+.... ...+++++|+..|++..+.+
T Consensus 266 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 266 ---------------------NYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred ---------------------HHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 111000000000000000000000011111111111 12245666666666655432
Q ss_pred ccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 046930 584 STVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVI 663 (965)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 663 (965)
. ..+....+++.++..+...|++++|+..|+++++..+ .+..+|..++
T Consensus 325 ~-------------------------------~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la 372 (615)
T TIGR00990 325 K-------------------------------LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRA 372 (615)
T ss_pred C-------------------------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHH
Confidence 1 2234577888999999999999999999999998743 2566888999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 046930 664 HSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLE 743 (965)
Q Consensus 664 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 743 (965)
.++...|++++|+..|+++++.+ +.+..++..+..++...|++++|+..|++.++.. +.+...+..++.++.+.|+++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998864 3347888899999999999999999999999862 446778889999999999999
Q ss_pred HHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChH-------HHHHHHHHHh-cCCCHHH
Q 046930 744 EAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFL-------GFLYLVKGLC-TKGRMEE 814 (965)
Q Consensus 744 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~-~~g~~~e 814 (965)
+|+..|++++.. .| +...++.++.++...|++++|++.|+++++ +.|+.. .+...+..+. ..|++++
T Consensus 451 eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 451 SSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 999999999874 56 467899999999999999999999999976 444321 1122222333 4799999
Q ss_pred HHHHHHHHHhcCcchhhhhccccccccc-cHHHHHHHhhhcCcHHHHHHHHHHHhhc
Q 046930 815 ARSILREMLQSKSVLELINRVDIEVESE-SVLNFLISLCEQGSILEAIAILDEIGYM 870 (965)
Q Consensus 815 A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 870 (965)
|...++++++ ..|+.. .+..++..+...|++++|++.|++....
T Consensus 527 A~~~~~kAl~------------l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 527 AENLCEKALI------------IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHh------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999988 445443 4666788889999999999999987544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-18 Score=183.83 Aligned_cols=667 Identities=14% Similarity=0.087 Sum_probs=402.8
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC 95 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (965)
....+ ...|++++|..++.+++++. |.....|..|+.+|-++|+.+++...+-.+...+ |.+...|..++....
T Consensus 145 eAN~l-farg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 145 EANNL-FARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHH-HHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHH
Confidence 33444 34599999999999999987 5577889999999999999999999998888888 788899999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCH
Q 046930 96 KIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT 175 (965)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 175 (965)
.+|+++.|.-+|.++++.. |++......-...|-+.|+...|...|.++....+..|.. ...
T Consensus 219 ~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e----------------r~~ 280 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE----------------RIE 280 (895)
T ss_pred hcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH----------------HHH
Confidence 9999999999999999987 7888888888889999999999999999999865311100 011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH------
Q 046930 176 VSYTILLDGFSKEGTIEKAVGILNKMIED-RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVY------ 248 (965)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------ 248 (965)
..--..+..+...++-+.|.+.++..... +-..+...++.++..+.+...++.|......+......+|...+
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 22233456677778889999999988873 22335566788888999999999999888877652222221111
Q ss_pred --------------------HHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcchHHHHHcCC
Q 046930 249 --------------------ATLIDGVCRRGDLDCAFRLLEDMEKKGIKP--SIVTYNTIINGLCKVGRTSDAEEVSKGI 306 (965)
Q Consensus 249 --------------------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 306 (965)
..+.-++.+....+....+........+.| +...+.-+..++...|++..|..++..+
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 122334445555555555555555554322 3456777777888888888888777544
Q ss_pred -----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-------
Q 046930 307 -----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEM------- 374 (965)
Q Consensus 307 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 374 (965)
..+...|..++.+|...|.++.|++.|+.++... +.+.-.-..|...+-+.|+.++|.+.+..+..-
T Consensus 441 ~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 441 TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 2356677778888888888888888888777654 223445556666777778888888777775421
Q ss_pred -CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHH
Q 046930 375 -NLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHK 453 (965)
Q Consensus 375 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 453 (965)
...|+..........+...|+.++=+..-.+++..... ...+ + .+..++... .....+..-......
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~-----~~~~--f---~~~~k~r~~--~~~~~~~~~~~~~~~ 587 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLK-----KRYI--F---PRNKKKRRR--AIAGTTSKRYSELLK 587 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHh--c---chHHHHHHH--hhccccccccchhHH
Confidence 22344445555566666667666544333333321000 0000 0 000000000 000000111112222
Q ss_pred HHHHHHHHcCChhhHHH--------HHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHH
Q 046930 454 IILQATFAKGGVGGVLN--------FVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSI 525 (965)
Q Consensus 454 ~~l~~~~~~g~~~~a~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 525 (965)
....+..+.++...... .......+..+..-..+..++..+++.++.++|..+...+.....-
T Consensus 588 ~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f--------- 658 (895)
T KOG2076|consen 588 QIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIF--------- 658 (895)
T ss_pred HHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh---------
Confidence 22222222222111110 0000111111111133444555666666666666666555442100
Q ss_pred HHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHH
Q 046930 526 LKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDV 605 (965)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 605 (965)
+
T Consensus 659 --------------------------------------------------~----------------------------- 659 (895)
T KOG2076|consen 659 --------------------------------------------------F----------------------------- 659 (895)
T ss_pred --------------------------------------------------h-----------------------------
Confidence 0
Q ss_pred HHHHHhhhccCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-C--Ccc-cHHHHHHHHHHHHhcCcHHHHHHHH
Q 046930 606 YKLVMGAEDSLPCMD--VVDYSTIVAALCREGYVNKALDLCAFAKNK-G--ITV-NIVTYNTVIHSLCRQGCFVEAFRLF 679 (965)
Q Consensus 606 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 679 (965)
.+.. -..-+..+.+.+..+++..|.+.++.|+.. + ..| -...|+..++...+.++-.-=...+
T Consensus 660 -----------~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 660 -----------QDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred -----------ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 012244556666778888888888887765 1 011 2345665556665555544444444
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh--cC--------CHHHHHHH
Q 046930 680 DSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPS-TRIYNSFIDGYCK--FG--------QLEEAFKF 748 (965)
Q Consensus 680 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~g--------~~~~A~~~ 748 (965)
..+.......+......-.+.....+.+..|+..|-++... .|+ +.+--.++-++.. .+ .+-+++..
T Consensus 729 ~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~af 806 (895)
T KOG2076|consen 729 MRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAF 806 (895)
T ss_pred HHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44443221122222233334456788899999988888775 344 3333333333321 11 23455666
Q ss_pred HHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC---------C----hHHHHHHHHHHhcCCCHHH
Q 046930 749 LHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP---------D----FLGFLYLVKGLCTKGRMEE 814 (965)
Q Consensus 749 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---------~----~~~~~~l~~~~~~~g~~~e 814 (965)
+.+..+.-..- ...++-+++.+|-..|-..-|+.+|+++++ +.| + ...-++|.-.|...|+.+.
T Consensus 807 L~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~--~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~l 884 (895)
T KOG2076|consen 807 LKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE--VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQL 884 (895)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC--CCccccccccCCcccHHHHHHhhhhhhhccCCcHHH
Confidence 55554431111 235677899999999999999999999965 432 1 2234558888999999999
Q ss_pred HHHHHHHH
Q 046930 815 ARSILREM 822 (965)
Q Consensus 815 A~~~~~~~ 822 (965)
|.+++++-
T Consensus 885 Arqil~ky 892 (895)
T KOG2076|consen 885 ARQILEKY 892 (895)
T ss_pred HHHHHHhh
Confidence 99988753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-20 Score=212.00 Aligned_cols=416 Identities=13% Similarity=0.024 Sum_probs=284.6
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
.+...+..+ .+.|+++.|+..|.+++... |++..+..++.+|.+.|++++|+..++.+++.+ |.+..+|..++
T Consensus 129 ~~k~~G~~~-~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~a 201 (615)
T TIGR00990 129 KLKEKGNKA-YRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD---PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CCCHHHHHHHH
Confidence 455677776 78899999999999998754 567789999999999999999999999999998 88899999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCcc-chhhhhhHHhhhh----
Q 046930 92 SGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKF-DVVFYSCWICGQM---- 166 (965)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~i~~~~---- 166 (965)
.+|...|++++|+..|..+...++ .+......++..+.. ..+.......++..+.. ...++..-+....
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 999999999999999988776542 222211222211111 12223333333222110 0000000000000
Q ss_pred ------hhcCCCCC-HHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 167 ------VDKGIKPD-TVSYTILLDGF---SKEGTIEKAVGILNKMIEDR-LRP-NLITYTAIIFGFCKKGKLEEAFTVFK 234 (965)
Q Consensus 167 ------~~~~~~~~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 234 (965)
......+. ...+..+...+ ...+++++|.+.|++++..+ ..| ....+..+...+...|++++|+..|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00000111 01111111111 22467888899998888764 122 45667778888888899999999998
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCH
Q 046930 235 KVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDV 310 (965)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~ 310 (965)
+..+.. +.+...|..+...+...|++++|...|+++++.... +..++..++..+...|++++|...|+.. |.+.
T Consensus 356 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 356 KSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 888774 344667778888888889999999999888876432 5677888888888888888888877543 5567
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccH-----H-HHH
Q 046930 311 VTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANS-----V-TYS 384 (965)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~-~~~ 384 (965)
..+..++.++.+.|++++|+..++..++.. +.+...++.+...+...|++++|+..|++..+.....+. . .+.
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 777778888888888888888888887654 345677777888888888888888888887765311111 1 111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046930 385 TMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEK 443 (965)
Q Consensus 385 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (965)
..+..+...|++++|+.+++++....|.+..++..++.++.+.|++++|+..|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22223334688888888888888877777778888888888888888888888887764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-19 Score=203.56 Aligned_cols=336 Identities=12% Similarity=0.075 Sum_probs=229.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
...++..+.+.|++++|..+++.++... |.++.++..++.+....|++++|++.|++++... |.+...+..++.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~---p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~ 119 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA---KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC---CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 4556677888999999999999999888 7888889999999999999999999999999876 6777888899999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN 209 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (965)
+...|++++|+..++++++.. +.+..++..++.++...|++++|...++.+....+. +
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~---------------------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~ 177 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF---------------------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-R 177 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-C
Confidence 999999999999999998753 245778888888999999999999999988776544 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046930 210 LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIING 289 (965)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 289 (965)
...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++++...... +...+..+...
T Consensus 178 ~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~ 255 (656)
T PRK15174 178 GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLA 255 (656)
T ss_pred HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3344333 347888999999999999887653444555555667888899999999999999877433 56777778888
Q ss_pred HHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 290 LCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQ 369 (965)
Q Consensus 290 ~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 369 (965)
+...|++++|. .+|+..++++.... +.+...+..+...+...|++++|...++
T Consensus 256 l~~~G~~~eA~--------------------------~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 256 YYQSGRSREAK--------------------------LQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHcCCchhhH--------------------------HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888877531 12333333433332 1233444444444555555555555555
Q ss_pred HchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 370 AMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNE 442 (965)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 442 (965)
++.+.. +.+..++..++.++...|++++|+..|+++....|.+...+..++.++...|++++|+..|+++++
T Consensus 309 ~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 309 QSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444432 222334444444455555555555555555444444433333344444455555555555555444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-16 Score=161.75 Aligned_cols=611 Identities=11% Similarity=0.011 Sum_probs=381.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 046930 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVN 140 (965)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 140 (965)
++..+|..++....+.+ |.++..|.+-++.--..|++..|..+..+-.+.. +.+...|...++ ....+.|.
T Consensus 265 ~DikKaR~llKSvretn---P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c--prSeDvWLeaiR----Lhp~d~aK 335 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN---PKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC--PRSEDVWLEAIR----LHPPDVAK 335 (913)
T ss_pred HHHHHHHHHHHHHHhcC---CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC--CchHHHHHHHHh----cCChHHHH
Confidence 57789999999999999 7788889888888889999999999888877654 677778865553 55667777
Q ss_pred HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046930 141 ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGF 220 (965)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 220 (965)
.+.-.+.+.. +.++..|..-+.. ..+...=.+++++.++.- +.++..|...+
T Consensus 336 ~vvA~Avr~~---------------------P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~i-P~sv~LWKaAV--- 387 (913)
T KOG0495|consen 336 TVVANAVRFL---------------------PTSVRLWLKAADL---ESDTKNKKRVLRKALEHI-PRSVRLWKAAV--- 387 (913)
T ss_pred HHHHHHHHhC---------------------CCChhhhhhHHhh---hhHHHHHHHHHHHHHHhC-CchHHHHHHHH---
Confidence 7777777642 2344444433322 234444567778887763 33566665544
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 046930 221 CKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAE 300 (965)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 300 (965)
...+.+.|.-++.++.+.- +.+.. |..++.+..-|+.|.++++...+. ++.+...|.+....--.+|+.+...
T Consensus 388 -elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 388 -ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred -hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHH
Confidence 3356667888888887762 33333 334667778888899999888876 4557778877776666677666665
Q ss_pred HHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCccc-
Q 046930 301 EVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVAN- 379 (965)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 379 (965)
++.. +-+..+...|+..+...|..=...|-..|..-.+..+....+..|+...
T Consensus 461 kii~--------------------------rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 461 KIID--------------------------RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred HHHH--------------------------HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 5542 1112333445555555666556666666666666666666555554332
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 046930 380 -SVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQA 458 (965)
Q Consensus 380 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (965)
..+|..-...|.+.+.++-|+.+|..+++..|.....|......--..|..++-..++++++.. ++-....+......
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 2467777777888888888888888888887777778877777777778888888888888775 33344445555556
Q ss_pred HHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhh
Q 046930 459 TFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLI 538 (965)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 538 (965)
....|++..|..++.++.+..|. ...+|-..+...+.+..++.|..+|.+... ..|+...|..-+.-.--.+..+++
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 66668888888888887777776 557888888888999999999999988766 345555555444444444445555
Q ss_pred hhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCC
Q 046930 539 GPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPC 618 (965)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 618 (965)
..+++..++..+.....+..+++.+-+.++++.|...|.+-.+.. |
T Consensus 671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c----------------------------------P 716 (913)
T KOG0495|consen 671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC----------------------------------P 716 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC----------------------------------C
Confidence 555555555555444444444444444444444444444322222 1
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 046930 619 MDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLI 698 (965)
Q Consensus 619 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 698 (965)
..+..|..+...-.+.|.+-.|..+++...-++++ +...|...++.-.+.|+.+.|..+..++++.. +.+...|..-|
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI 794 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAI 794 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHH
Confidence 23555555555555556666666666666555443 55566666666666666666666666555532 22334444444
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCH
Q 046930 699 YNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDM 777 (965)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 777 (965)
....+.++--.+...+++ +.-|+++....+..+-...++++|.+.|.+..+. .|| -.+|..+...+.++|.-
T Consensus 795 ~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCH
Confidence 444444442222222222 2335555555556666666666666666666653 443 34555555555666666
Q ss_pred HHHHHHHHHhH
Q 046930 778 EGALGFFLDFN 788 (965)
Q Consensus 778 ~~A~~~~~~~~ 788 (965)
++-.+++.+..
T Consensus 868 ed~kev~~~c~ 878 (913)
T KOG0495|consen 868 EDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHh
Confidence 66666666553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-19 Score=205.21 Aligned_cols=335 Identities=12% Similarity=0.048 Sum_probs=252.8
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
...++... .++|++++|+..+...+... +.++..+..++.+....|++++|+..|+++++.+ |.++.++..++.
T Consensus 45 ~~~~~~~~-~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---P~~~~a~~~la~ 118 (656)
T PRK15174 45 IILFAIAC-LRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN---VCQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHH-HhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---CCChHHHHHHHH
Confidence 44455554 79999999999999988866 4556677778888889999999999999999999 889999999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCC
Q 046930 93 GFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIK 172 (965)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 172 (965)
++...|++++|+..|++++... |.+...+..++.++...|++++|...++++....+
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P--------------------- 175 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP--------------------- 175 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC---------------------
Confidence 9999999999999999999976 67788999999999999999999999998876532
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLI 252 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 252 (965)
.+...+..+ ..+...|++++|...++.+++..+.++...+..++.++...|++++|+..++++.+.. +.+...+..+.
T Consensus 176 ~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg 253 (656)
T PRK15174 176 PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLG 253 (656)
T ss_pred CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 233344333 3478899999999999999887554455556666788999999999999999999876 55778888899
Q ss_pred HHHHhcCCHhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhH
Q 046930 253 DGVCRRGDLDC----AFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNG 328 (965)
Q Consensus 253 ~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (965)
..+...|++++ |...|++.....+. +...+..++..+...|++++|...+
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l------------------------- 307 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLL------------------------- 307 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH-------------------------
Confidence 99999999986 78999998876432 5566777777777777666666554
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046930 329 ILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANS-VTYSTMIDGYCKLGRIEEALEIFDELR 407 (965)
Q Consensus 329 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (965)
+++.... +.+...+..+...+.+.|++++|...|+.+.+.+ |+. ..+..++.++...|+.++|+..|+++.
T Consensus 308 -----~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 308 -----QQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred -----HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444332 2234445555556666666666666666665543 332 223334455566666666666666666
Q ss_pred hcCCC
Q 046930 408 RMSIS 412 (965)
Q Consensus 408 ~~~~~ 412 (965)
+..|.
T Consensus 380 ~~~P~ 384 (656)
T PRK15174 380 QARAS 384 (656)
T ss_pred HhChh
Confidence 55444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=203.06 Aligned_cols=258 Identities=16% Similarity=0.154 Sum_probs=183.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC----HhhHHHHH
Q 046930 623 DYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS----EVSYATLI 698 (965)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~ 698 (965)
.+..++..|.+.|++++|..+|+++.+.. +++..++..++.++.+.|++++|++.++.+.+.+..+. ...+..++
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34455566666667777777777666542 23556677777777777777777777777776442221 12345566
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhcCC
Q 046930 699 YNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD--KFTVSAVINGFCQKGD 776 (965)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 776 (965)
..+...|++++|.+.|+++++.. +.+...+..++.++.+.|++++|.+.++++.+. .|+ ..+++.++.+|...|+
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCC
Confidence 77778888888888888888752 334667778888888899999999999888874 443 3567788888889999
Q ss_pred HHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhh---
Q 046930 777 MEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCE--- 853 (965)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 853 (965)
+++|++.++++.+ ..|+...+..++..+.+.|++++|..+++++++ ..|+...+..++..+..
T Consensus 265 ~~~A~~~l~~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~------------~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 265 EAEGLEFLRRALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLR------------RHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH------------hCcCHHHHHHHHHHhhhccC
Confidence 9999999998866 467766677788888899999999999998887 45566566666655432
Q ss_pred cCcHHHHHHHHHHHhhccCCCccc--chhhhhhhhhhhhhhhccccc
Q 046930 854 QGSILEAIAILDEIGYMLFPTQRF--GTDRAIETQNKLDECESLNAV 898 (965)
Q Consensus 854 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 898 (965)
.|+.++|+.+++++..+....++. |.+-++-...-.+.|++||+.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~~~~~~~~c~~c~~~ 377 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPRYRCRNCGFTARTLYWHCPSCKAW 377 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCCEECCCCCCCCccceeECcCCCCc
Confidence 568889999998887664333443 333446666667777777663
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-19 Score=204.28 Aligned_cols=410 Identities=9% Similarity=0.009 Sum_probs=300.6
Q ss_pred cccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.|.++....-.+..+ .-.|++++|+..+..+.... +.+...+..++.++...|++++|+..|+++++.. |.++.
T Consensus 11 ~~~~~~~~~d~~~ia-~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~---P~~~~ 84 (765)
T PRK10049 11 SALSNNQIADWLQIA-LWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE---PQNDD 84 (765)
T ss_pred cCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH
Confidence 355555555555554 67899999999999977533 5567778999999999999999999999999998 88899
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
++..++.++...|++++|+..+++++... |.+.. +..++.++...|+.++|+..++++++..|
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-------------- 147 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-------------- 147 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------
Confidence 99999999999999999999999999876 67777 88999999999999999999999998642
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHH
Q 046930 166 MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNL------ITYTAIIFGFC-----KKGKL---EEAFT 231 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~ 231 (965)
.+...+..++.++...+..++|+..++.+.. .|+. .....++.... ..+++ ++|+.
T Consensus 148 -------~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 148 -------QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred -------CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 4566677788888889999999999987664 2221 11222233222 12234 77888
Q ss_pred HHHHHHHc-CCCCCHh-HH----HHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCcchHHHHHc
Q 046930 232 VFKKVEDL-GLVADEF-VY----ATLIDGVCRRGDLDCAFRLLEDMEKKGIK-PSIVTYNTIINGLCKVGRTSDAEEVSK 304 (965)
Q Consensus 232 ~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 304 (965)
.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..++
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHH
Confidence 88888854 1122221 11 11133456779999999999999887543 332 23335778888999999988876
Q ss_pred CC---CC-C----HHHHHHHHHHhhhcCChhHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHH
Q 046930 305 GI---LG-D----VVTYSTLLHGYIEEDNVNGILETKQRLEEAGI-----------QMD---IVMCNILIKALFMVGALE 362 (965)
Q Consensus 305 ~~---~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~ 362 (965)
.+ .| + ......+..++...+++++|+..++.+....+ .|+ ...+..+...+...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 43 11 1 23455566677888888888888888776532 122 124455666777788888
Q ss_pred HHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 363 DARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNE 442 (965)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 442 (965)
+|+.+++++.... +.+...+..++..+...|++++|++.++++....|.+...+...+..+...|++++|..+++++++
T Consensus 377 eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 377 QAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888877654 455667777788888888888888888888888887777888888888888888888888888877
Q ss_pred CCCCCCHHhH
Q 046930 443 KGLSLYVGMH 452 (965)
Q Consensus 443 ~~~~~~~~~~ 452 (965)
. .|+....
T Consensus 456 ~--~Pd~~~~ 463 (765)
T PRK10049 456 R--EPQDPGV 463 (765)
T ss_pred h--CCCCHHH
Confidence 5 5555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-18 Score=197.43 Aligned_cols=405 Identities=10% Similarity=-0.017 Sum_probs=296.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.++....-.+++....|+.++|++++......+ |....++..++.++...|++++|++.|++++... |.++..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~---~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~ 86 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM---QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQ 86 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 4566677778888999999999999999998766 6778889999999999999999999999999876 6778888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
..++.++...|++++|+..++++++.. +.+.. +..+..++...|++++|+..++++++
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~---------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA---------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999998863 24556 88889999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------hHHHHHHHHHH-----hcCCH---hHHHHHHH
Q 046930 204 DRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADE------FVYATLIDGVC-----RRGDL---DCAFRLLE 269 (965)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~ 269 (965)
..+. +...+..+..++...+..+.|+..++.+.. .|+. .....++.... ..+++ ++|++.++
T Consensus 145 ~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 145 RAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 8655 677777788888899999999999987664 2221 11222222222 12234 77888888
Q ss_pred HHHHC-CCCCCHH-HH----HHHHHHHHhcCCcchHHHHHcCCCC-----CHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 046930 270 DMEKK-GIKPSIV-TY----NTIINGLCKVGRTSDAEEVSKGILG-----DVVTYSTLLHGYIEEDNVNGILETKQRLEE 338 (965)
Q Consensus 270 ~~~~~-g~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (965)
.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.. .......+...|...|++++|+..++.+..
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 88854 2223221 11 1113345677899999988876521 111233357788899999999999998876
Q ss_pred cCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-----------ccc---HHHHHHHHHHHHHcCCHHHHHH
Q 046930 339 AGIQM---DIVMCNILIKALFMVGALEDARALYQAMPEMNL-----------VAN---SVTYSTMIDGYCKLGRIEEALE 401 (965)
Q Consensus 339 ~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~ 401 (965)
..... .......+..++...|++++|..+++.+.+... .|+ ......++..+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 54221 134556667778889999999999988876531 122 2345667778888999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHHcCChhhHHHHHHHHHhccc
Q 046930 402 IFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVG-MHKIILQATFAKGGVGGVLNFVYRIENLRS 480 (965)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~ 480 (965)
.++++....|.+...+..++..+...|++++|++.+++++.. .|+.. ........+...|++++|+..++++....|
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 999999888889999999999999999999999999998876 45543 333333344444444444444444444444
Q ss_pred c
Q 046930 481 E 481 (965)
Q Consensus 481 ~ 481 (965)
+
T Consensus 459 d 459 (765)
T PRK10049 459 Q 459 (765)
T ss_pred C
Confidence 3
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-19 Score=190.38 Aligned_cols=307 Identities=12% Similarity=0.053 Sum_probs=176.3
Q ss_pred HHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCccc---HHHHHHHHHHHHHc
Q 046930 317 LHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVAN---SVTYSTMIDGYCKL 393 (965)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 393 (965)
+..+...|++++|+..|.++.+.+ +.+..++..++..+...|++++|..+++.+......++ ..++..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334455566666666666666653 23445566666666667777777777666655321111 13455666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHH
Q 046930 394 GRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVY 473 (965)
Q Consensus 394 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~ 473 (965)
|++++|..+|+++.+..+.+..++..++.++...|++++|++.++.+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 7777777777766666555666666666666666666666666666655421111100
Q ss_pred HHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCc
Q 046930 474 RIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVE 553 (965)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (965)
T Consensus 179 -------------------------------------------------------------------------------- 178 (389)
T PRK11788 179 -------------------------------------------------------------------------------- 178 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHh
Q 046930 554 PMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCR 633 (965)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (965)
....+..++..+.+
T Consensus 179 ------------------------------------------------------------------~~~~~~~la~~~~~ 192 (389)
T PRK11788 179 ------------------------------------------------------------------IAHFYCELAQQALA 192 (389)
T ss_pred ------------------------------------------------------------------HHHHHHHHHHHHHh
Confidence 01122334444555
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHH
Q 046930 634 EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKL 713 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 713 (965)
.|++++|+..|+++.+.. +.+...+..++..+.+.|++++|+++|+++.+.+......++..++.+|...|++++|.+.
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 556666666666555542 2234455556666666666666666666666533111134455666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHh---cCCHHHHHHHHHHhHhC
Q 046930 714 FDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQ---KGDMEGALGFFLDFNTK 790 (965)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 790 (965)
++++.+. .|+...+..++..+.+.|++++|...++++.+. .|+..+++.++..+.. .|+.++++..++++.+.
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 6666653 344445566666666677777777777666653 5666666655555443 34666666666666655
Q ss_pred CCCCChH
Q 046930 791 GVSPDFL 797 (965)
Q Consensus 791 ~~~p~~~ 797 (965)
++.|++.
T Consensus 348 ~~~~~p~ 354 (389)
T PRK11788 348 QLKRKPR 354 (389)
T ss_pred HHhCCCC
Confidence 5544443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-16 Score=180.17 Aligned_cols=452 Identities=12% Similarity=0.018 Sum_probs=304.4
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHH
Q 046930 312 TYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYC 391 (965)
Q Consensus 312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (965)
+....+-...+.|+++.|+..|+++.+..+......+ .++..+...|+.++|+..+++..... +........++..+.
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~ 113 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHH
Confidence 3344445566788888888888888877533222333 77777888899999999999888321 233444445567888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHH
Q 046930 392 KLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNF 471 (965)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~ 471 (965)
..|++++|+++|+++.+..|.++.++..++..+...++.++|+..++++... .|+...+..+...+...++..+|+..
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 8899999999999999999888888888888889999999999999998876 55555543333333333444446666
Q ss_pred HHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCC
Q 046930 472 VYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGL 551 (965)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (965)
++++....|+.. .++..+..++.+.|-...|.++..+-.. ..+...+..+
T Consensus 192 ~ekll~~~P~n~-e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l-------------------------- 241 (822)
T PRK14574 192 SSEAVRLAPTSE-EVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQL-------------------------- 241 (822)
T ss_pred HHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHH--------------------------
Confidence 666666665543 2333444555566666666554443111 0000000000
Q ss_pred CchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhc---cCCCCc---hhhHH
Q 046930 552 VEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAED---SLPCMD---VVDYS 625 (965)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~---~~~~~ 625 (965)
..+.|....+.....+.+..... --.+.|+.-++.+.+ ..|+.. ..+..
T Consensus 242 ----------------~~~~~a~~vr~a~~~~~~~~~r~---------~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~ 296 (822)
T PRK14574 242 ----------------ERDAAAEQVRMAVLPTRSETERF---------DIADKALADYQNLLTRWGKDPEAQADYQRARI 296 (822)
T ss_pred ----------------HHHHHHHHHhhcccccccchhhH---------HHHHHHHHHHHHHHhhccCCCccchHHHHHHH
Confidence 00011111111000000000000 011223333333333 223221 12223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-----CCCHhhHHHHHHH
Q 046930 626 TIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM-----VPSEVSYATLIYN 700 (965)
Q Consensus 626 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~ 700 (965)
..+-++...|+..++++.|+.+...+.+....+-..++++|...+++++|+.+|.++..... .++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 55667888999999999999999888766677888999999999999999999999977431 1233335778889
Q ss_pred HHccCChHHHHHHHHHHHHC-C----------CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHH
Q 046930 701 LCKEGQLLDAKKLFDRMVLK-G----------FKPS---TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVS 765 (965)
Q Consensus 701 ~~~~g~~~~A~~~~~~~~~~-~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 765 (965)
|..++++++|..+++++.+. . -.|| ......++..+...|++.+|++.++++... .| |.....
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~ 454 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRI 454 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 99999999999999999873 1 0122 234456788899999999999999999884 67 678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 766 AVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 766 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
.++..+...|.+.+|.+.++.+. .+.|+... ...++.++...|++++|....+.+++..
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~--~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVE--SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHh--hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999999999999998874 46887655 7779999999999999999999999843
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-17 Score=183.72 Aligned_cols=439 Identities=11% Similarity=0.043 Sum_probs=331.2
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..|...+.. .++|+++.|+..|+++++..+ .++.....++..+...|+.++|+..+++++... |.....+..+
T Consensus 36 ~~y~~aii~--~r~Gd~~~Al~~L~qaL~~~P--~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~---n~~~~~llal 108 (822)
T PRK14574 36 TQYDSLIIR--ARAGDTAPVLDYLQEESKAGP--LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM---NISSRGLASA 108 (822)
T ss_pred HHHHHHHHH--HhCCCHHHHHHHHHHHHhhCc--cchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC---CCCHHHHHHH
Confidence 355555554 489999999999999998663 332222388888899999999999999999443 5556666666
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKG 170 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (965)
+..|...|++++|+++|+++++.. |.++..+..++..+...++.++|++.++++.+.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------------------- 165 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--------------------- 165 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---------------------
Confidence 889999999999999999999987 677788888888999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH--
Q 046930 171 IKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVY-- 248 (965)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-- 248 (965)
.|+...+..++..+...++..+|++.++++.+..+. +...+..+..++.+.|-...|.++..+-...- .+...-+
T Consensus 166 -dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~ 242 (822)
T PRK14574 166 -DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLE 242 (822)
T ss_pred -CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHH
Confidence 356555655554555567777799999999998644 77888889999999999999998777643221 1111111
Q ss_pred ----HHHHHHH---H--hcCC---HhHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHhcCCcchHHHHHcCCC---
Q 046930 249 ----ATLIDGV---C--RRGD---LDCAFRLLEDMEKK-GIKPSI-----VTYNTIINGLCKVGRTSDAEEVSKGIL--- 307 (965)
Q Consensus 249 ----~~l~~~~---~--~~g~---~~~A~~~~~~~~~~-g~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~--- 307 (965)
..++..- . ...+ .+.|+.-++.+... +..|.. ....-.+.++...|++.++++.++.++
T Consensus 243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 1111000 0 1112 34455566665542 222322 122344557788999999999987663
Q ss_pred --CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCC----
Q 046930 308 --GDVVTYSTLLHGYIEEDNVNGILETKQRLEEAG-----IQMDIVMCNILIKALFMVGALEDARALYQAMPEMNL---- 376 (965)
Q Consensus 308 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 376 (965)
-...+...++++|...+.+++|+.++..+.... .+++......|..++...+++++|..+++.+.+...
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 134467788999999999999999999997754 233455567899999999999999999999977321
Q ss_pred -------cccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046930 377 -------VANS---VTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLS 446 (965)
Q Consensus 377 -------~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 446 (965)
.||. .....++..+.-.|++.+|++.++++....|.|......++..+...|.+..|...++.+... .
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~ 480 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--A 480 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--C
Confidence 1222 355667888899999999999999999999999999999999999999999999999877765 4
Q ss_pred CC-HHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccch
Q 046930 447 LY-VGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYD 484 (965)
Q Consensus 447 ~~-~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (965)
|+ ..+......+....+++.+|..+...+.+..|+...
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 44 455566677778889999999999999999888764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-14 Score=142.15 Aligned_cols=611 Identities=13% Similarity=0.067 Sum_probs=452.9
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhh
Q 046930 23 KRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPEL 102 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 102 (965)
.-+|...|.-+++.+.+..+ ..+..|..-++.--..|++..|..+...-.+.. |.+.++|..-+ +..-.+.
T Consensus 263 dl~DikKaR~llKSvretnP--~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c---prSeDvWLeai----RLhp~d~ 333 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVRETNP--KHPPGWIASARLEEVAGKLSVARNLIMKGCEEC---PRSEDVWLEAI----RLHPPDV 333 (913)
T ss_pred cHHHHHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC---CchHHHHHHHH----hcCChHH
Confidence 34567789888888777664 445556666666778899999999999888877 78888887654 4567788
Q ss_pred HHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHH
Q 046930 103 AIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILL 182 (965)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 182 (965)
|..+.-.++... |.++..|......- .+...=..+++++++. ++.++..|-...
T Consensus 334 aK~vvA~Avr~~--P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~---------------------iP~sv~LWKaAV 387 (913)
T KOG0495|consen 334 AKTVVANAVRFL--PTSVRLWLKAADLE---SDTKNKKRVLRKALEH---------------------IPRSVRLWKAAV 387 (913)
T ss_pred HHHHHHHHHHhC--CCChhhhhhHHhhh---hHHHHHHHHHHHHHHh---------------------CCchHHHHHHHH
Confidence 888988888764 67777776555432 2233334577777765 234455555433
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHh
Q 046930 183 DGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLD 262 (965)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 262 (965)
...+.+.|.-++.++.+. ++.+...| .+|.+..-|+.|..++..+.+. ++.+..+|.+....--..|+.+
T Consensus 388 ----elE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 388 ----ELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred ----hccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHH
Confidence 345666688888888875 23244444 3556667889999999998875 5777888887777667789999
Q ss_pred HHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC-------CCCHHHHHHHHHHhhhcCChhHHHH
Q 046930 263 CAFRLLEDME----KKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI-------LGDVVTYSTLLHGYIEEDNVNGILE 331 (965)
Q Consensus 263 ~A~~~~~~~~----~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (965)
...+++.+-+ ..|+..+...|..=...|-..|..-.+..+...+ .....+|..-...+.+.+.++-|..
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 8888877653 4688888888888888888888776666654422 2455688888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 046930 332 TKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSI 411 (965)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 411 (965)
+|...++.. +.+...|......--..|..++-..+|+++...- +.....|...+..+-..|+...|..++..+.+..|
T Consensus 538 Vya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 538 VYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 999888764 4566777777776667899999999999998753 34445666777778889999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHH
Q 046930 412 SSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVI 491 (965)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (965)
.+...|..-+..-....+++.|..+|.+.... .|+...+..-...-...+..++|.+++++..+..|+.. .+|-.++
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~-Kl~lmlG 692 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH-KLWLMLG 692 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH-HHHHHHh
Confidence 99999999999999999999999999998864 67777777777777778999999999988888777654 6788888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHH
Q 046930 492 SFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTN 571 (965)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (965)
..+-+.++.+.|.+.|..-.+.- |. ..|.+..+...--
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~c--P~---------------------------------~ipLWllLakleE------- 730 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKC--PN---------------------------------SIPLWLLLAKLEE------- 730 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccC--CC---------------------------------CchHHHHHHHHHH-------
Confidence 88999999999999997755432 22 2222222222222
Q ss_pred HHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046930 572 ALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKG 651 (965)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 651 (965)
+.|....|..+++...-.. |.+...|...+.+-.+.|+.+.|..+..++++.
T Consensus 731 --------------------------k~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe- 782 (913)
T KOG0495|consen 731 --------------------------KDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE- 782 (913)
T ss_pred --------------------------HhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 2233344444444433332 457999999999999999999999999999887
Q ss_pred CcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHH
Q 046930 652 ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNS 731 (965)
Q Consensus 652 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 731 (965)
++.+...|..-+....+-++-..+...+++. ..|+.....+...+-...++++|.+.|.+.++.+ +.+-.+|.-
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~ 856 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAW 856 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHH
Confidence 4447777887777776666655555544443 3566677777888888899999999999999863 445678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCh
Q 046930 732 FIDGYCKFGQLEEAFKFLHDLKINCLEPDK 761 (965)
Q Consensus 732 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 761 (965)
+...+...|.-++-.+++.+... ..|..
T Consensus 857 fykfel~hG~eed~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCET--AEPTH 884 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhc--cCCCC
Confidence 88888999988888888888776 36653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-16 Score=152.81 Aligned_cols=497 Identities=14% Similarity=0.106 Sum_probs=254.5
Q ss_pred chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHH
Q 046930 83 DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWI 162 (965)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i 162 (965)
...+++.++.-|..+..+.+|+..|+-+++...+|..-..-..++.++.+.+.+.+|++.|+-++..-|..+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin-------- 271 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-------- 271 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc--------
Confidence 345667777777777778888888877776654443333445677777777788888887777665422111
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 046930 163 CGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV 242 (965)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 242 (965)
....+...+.+...+.+.|.++.|+..|+...+. .||..+-..|+-++..-|+.++..+.|..|+.....
T Consensus 272 --------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~ 341 (840)
T KOG2003|consen 272 --------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGE 341 (840)
T ss_pred --------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCC
Confidence 0111334555555677778888888888777664 456555444444555567777777777777755333
Q ss_pred CCHhHH--------HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC-CCCHHHH
Q 046930 243 ADEFVY--------ATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI-LGDVVTY 313 (965)
Q Consensus 243 ~~~~~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~ 313 (965)
+|..-| ..|+.--.+. ..++.|.+.... +..-+ ++. +.++...+ .|+..+
T Consensus 342 ~dddkyi~~~ddp~~~ll~eai~n-------d~lk~~ek~~ka-~aek~--i~t----------a~kiiapvi~~~fa~- 400 (840)
T KOG2003|consen 342 IDDDKYIKEKDDPDDNLLNEAIKN-------DHLKNMEKENKA-DAEKA--IIT----------AAKIIAPVIAPDFAA- 400 (840)
T ss_pred CCcccccCCcCCcchHHHHHHHhh-------HHHHHHHHhhhh-hHHHH--HHH----------HHHHhccccccchhc-
Confidence 332211 1111110000 011111111000 00000 000 00000000 011000
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHH-
Q 046930 314 STLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCK- 392 (965)
Q Consensus 314 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 392 (965)
. .+-.++.++.-....+..+ .-..-...+.+.|+++.|+++++-+.+.+-+..+.+-+.|...+.-
T Consensus 401 ---g--------~dwcle~lk~s~~~~la~d--lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq 467 (840)
T KOG2003|consen 401 ---G--------CDWCLESLKASQHAELAID--LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ 467 (840)
T ss_pred ---c--------cHHHHHHHHHhhhhhhhhh--hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh
Confidence 0 0000000000000000000 0011122356777777777777766654422223333333333332
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHH
Q 046930 393 -LGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNF 471 (965)
Q Consensus 393 -~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~ 471 (965)
-.++..|.+.-+..+..+.-+..+...-+......|++++|.+.|++.+..........|+
T Consensus 468 ggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn------------------ 529 (840)
T KOG2003|consen 468 GGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN------------------ 529 (840)
T ss_pred cccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH------------------
Confidence 3456777777777776666677777766666667788888888888877653222222222
Q ss_pred HHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCC
Q 046930 472 VYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGL 551 (965)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (965)
++..+.+.|++++|+..|-++..- --.
T Consensus 530 ------------------iglt~e~~~~ldeald~f~klh~i-----------------------------------l~n 556 (840)
T KOG2003|consen 530 ------------------IGLTAEALGNLDEALDCFLKLHAI-----------------------------------LLN 556 (840)
T ss_pred ------------------hcccHHHhcCHHHHHHHHHHHHHH-----------------------------------HHh
Confidence 223345667777777776553220 000
Q ss_pred CchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHH
Q 046930 552 VEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAAL 631 (965)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (965)
...++.+++..|....+...|++++.+.. . +.|.|+.....|+..|
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~---------------------------------s-lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQAN---------------------------------S-LIPNDPAILSKLADLY 602 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhc---------------------------------c-cCCCCHHHHHHHHHHh
Confidence 11222333333333333333333333221 1 1234566667777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHH-HHHccCChHHH
Q 046930 632 CREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIY-NLCKEGQLLDA 710 (965)
Q Consensus 632 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A 710 (965)
-+.|+-..|...+-+--.- ++.+..+...|...|....-+++|+.+|+++.- +.|+..-|..++. ++.+.|++.+|
T Consensus 603 dqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHH
Confidence 7777766666655443332 444666666666666666667777777766544 4566666666553 34456777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 046930 711 KKLFDRMVLKGFKPSTRIYNSFIDGYCKFG 740 (965)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 740 (965)
+++|+...++ ++.|.....-|+.++...|
T Consensus 680 ~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 680 FDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 7777766654 5666666666666665555
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-16 Score=153.52 Aligned_cols=426 Identities=16% Similarity=0.102 Sum_probs=263.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 046930 348 CNILIKALFMVGALEDARALYQAMPEMNLVAN-SVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCK 426 (965)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (965)
+-...+-|.+.|.+++|+++|...++.. |+ +..|.....+|...|+|++.++...+.++..|..+.++..-..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 3445566778888888888888888753 66 67777888888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccch-hHHHHHHHHHH---------h
Q 046930 427 SGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYD-IICNDVISFLC---------K 496 (965)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~---------~ 496 (965)
.|++++|+.-..-..-.+--.+..+ ..++.-..+.-....+.+.++ ....|..++ .........+. +
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~-~~~~eR~Lkk~a~~ka~e~~k--~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASI-EPMAERVLKKQAMKKAKEKLK--ENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchh-HHHHHHHHHHHHHHHHHHhhc--ccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 8888877654433321111111111 111111110000001111111 001111111 00000000000 0
Q ss_pred cCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHH
Q 046930 497 RGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFI 576 (965)
Q Consensus 497 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 576 (965)
...-+.+..-.-+.+..+ .++ .+..+.+.+.+-..... ...+.+.+++-++..
T Consensus 273 ~~ksDa~l~~~l~~l~~~---~~e-------------~Y~~a~~~~te~~~~~~-----------~~~~~n~~d~~le~~ 325 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKG---LEE-------------GYLKAYDKATEECLGSE-----------SSLSVNEIDAELEYM 325 (606)
T ss_pred CccchhhHHHHHHHHHhh---Cch-------------hHHHHHHHHHHHhhhhh-----------hhccccccchhHHHH
Confidence 000111111100000000 000 01111111110000000 000000011110000
Q ss_pred HhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH
Q 046930 577 KNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNI 656 (965)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 656 (965)
-. .+.......+..|+...|...++......|. +...|-.+..+|....+.++-...|+.....++. |+
T Consensus 326 A~---------al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~ 394 (606)
T KOG0547|consen 326 AE---------ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NP 394 (606)
T ss_pred HH---------HHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CC
Confidence 00 0001112444556667777777766655554 3555888899999999999999999999988654 77
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDG 735 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 735 (965)
.+|..-+..+.-.+++++|+.-|++.++.+ |. ...|..+..+..+.++++++...|++.+++ ++.-+..|+..+.+
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAei 471 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEI 471 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHH
Confidence 889889999999999999999999999954 54 788899998889999999999999999986 77788999999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCh-------h--HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHH
Q 046930 736 YCKFGQLEEAFKFLHDLKINCLEPDK-------F--TVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKG 805 (965)
Q Consensus 736 ~~~~g~~~~A~~~~~~~~~~~~~p~~-------~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~ 805 (965)
+..++++++|.+.|...++. .|+. . +.-.++ .+.-.+++..|+++++++++ ++|.... +..|+..
T Consensus 472 LtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 472 LTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQF 546 (606)
T ss_pred HhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHH
Confidence 99999999999999999884 6641 1 112222 22244899999999999965 8887766 8999999
Q ss_pred HhcCCCHHHHHHHHHHHHh
Q 046930 806 LCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 806 ~~~~g~~~eA~~~~~~~~~ 824 (965)
...+|+.++|+++|++...
T Consensus 547 ~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999876
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-16 Score=152.93 Aligned_cols=284 Identities=13% Similarity=0.080 Sum_probs=209.5
Q ss_pred hHHHHHHHHHHhhhcHHHHHHHHHhhhhcCcccc--chHHHHHH-HH-hcCCHHHHHHHHHhhhccCCCCchhhHHHHHH
Q 046930 554 PMISKFLVQYLCLNDVTNALLFIKNMKEISSTVT--IPVNVLKK-LL-KAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVA 629 (965)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 629 (965)
+.-...+..++..|+++.|++.++-+........ .+.++... ++ ...+..+|.+..+..... ..-++.+...-+.
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn 498 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGN 498 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCc
Confidence 3444567788899999999999887765544332 23444442 23 344567777766554322 2223444444455
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHH
Q 046930 630 ALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLD 709 (965)
Q Consensus 630 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 709 (965)
.-...|++++|.+.|++.+..... -......++.++...|++++|++.|-++... +..+..+...+...|....+..+
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHH
Confidence 556679999999999999876322 1234445667888999999999999887653 23567888889999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 710 AKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 710 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
|++++.+.... ++.|+.+..-|++.|-+.|+-.+|.+.+-.--.. ++-+..+...|+.-|....-+++++.+|+++
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka-- 652 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA-- 652 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--
Confidence 99999998875 5678999999999999999999999886555442 4447888889999899999999999999998
Q ss_pred CCCCCChHHHHHHHHHH-hcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcC
Q 046930 790 KGVSPDFLGFLYLVKGL-CTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQG 855 (965)
Q Consensus 790 ~~~~p~~~~~~~l~~~~-~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 855 (965)
.=++|+...|..++..| .+.|++.+|++.|+..-.+++ -+.+++.-|+......|
T Consensus 653 aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp-----------edldclkflvri~~dlg 708 (840)
T KOG2003|consen 653 ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP-----------EDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc-----------cchHHHHHHHHHhcccc
Confidence 44899999988766655 579999999999999987643 24555555555444433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-12 Score=124.97 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHhhHHHHHH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERID-MVPSEVSYATLIY 699 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~ 699 (965)
..++..-|..-.+.+++|....+|++.++-++. |..+|......-...|+.+.|..+|.-+++.. +......|-+.++
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 455566666667778888888888888887544 77788888877778888888888888887632 2223455666666
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046930 700 NLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFID 734 (965)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 734 (965)
.=...|.++.|..+|+++++. .+-..+|..++.
T Consensus 516 FEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 516 FEIEEGEFEKARALYERLLDR--TQHVKVWISFAK 548 (677)
T ss_pred hhhhcchHHHHHHHHHHHHHh--cccchHHHhHHH
Confidence 667788888888888888874 344446666654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-12 Score=126.29 Aligned_cols=437 Identities=11% Similarity=0.050 Sum_probs=271.2
Q ss_pred hHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhh
Q 046930 246 FVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYI 321 (965)
Q Consensus 246 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~ 321 (965)
..|....+-=...+++..|..+|+..+..... +...|...+.+-.++..+..|..+++.. |.-...|...+..--
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33443333334456666677777777665432 5566666666666777777777766543 344455666666666
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHH
Q 046930 322 EEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALE 401 (965)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (965)
..|++..|.++|++..+. .|+...|++.+..-.+-+.++.|..++++.+-. .|+..+|...+..-.++|....|..
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 778888888888887764 688889999998888888899999999988774 4888888888888888999999999
Q ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---hHHHHHHHHHHcCChhhHHHHHHHH
Q 046930 402 IFDELRRMSIS---SVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVG---MHKIILQATFAKGGVGGVLNFVYRI 475 (965)
Q Consensus 402 ~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~g~~~~a~~~~~~~ 475 (965)
+|..+.+.... +...+...+..-.++..++.|..+|+-.++. -|... .+..+...=-+-|+..++.+.+-.-
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 99888876322 2334444444445667788888888888775 22221 1111111100111111111111000
Q ss_pred HhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchH
Q 046930 476 ENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPM 555 (965)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (965)
=.--|+..++
T Consensus 307 ---------------------------Rk~qYE~~v~------------------------------------------- 316 (677)
T KOG1915|consen 307 ---------------------------RKFQYEKEVS------------------------------------------- 316 (677)
T ss_pred ---------------------------hhhHHHHHHH-------------------------------------------
Confidence 0000111111
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcC
Q 046930 556 ISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREG 635 (965)
Q Consensus 556 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (965)
..|-|..+|...+......|
T Consensus 317 ------------------------------------------------------------~np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 317 ------------------------------------------------------------KNPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred ------------------------------------------------------------hCCCCchHHHHHHHHHHhcC
Confidence 11345666777777777777
Q ss_pred CHHHHHHHHHHHHhcCCcccHH--HHHHHH-----HHH---HhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----
Q 046930 636 YVNKALDLCAFAKNKGITVNIV--TYNTVI-----HSL---CRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNL---- 701 (965)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~-----~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---- 701 (965)
+.+...++|+.++.. ++|-.. .|...+ .++ ....+.+.+.++|+..++. ++....||.-+--.|
T Consensus 337 ~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 777777888777765 444221 122111 111 2456777788888877772 222345555443333
Q ss_pred HccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 046930 702 CKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGA 780 (965)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 780 (965)
.++.++..|.+++..++ |..|-..++...+..-.+.+++|....+|++.++ ..| |..+|...+..=...|+.+.|
T Consensus 415 IRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHH
Confidence 46677788888887777 4567777777777777778888888888888877 356 556777777666777888888
Q ss_pred HHHHHHhHhCCCCCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 781 LGFFLDFNTKGVSPDFL-GFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 781 ~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
..+|+-+++.....-+. .+...+.-=...|.++.|..+|+++++.
T Consensus 491 RaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 491 RAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 88888776532111112 2444454445678888888888888774
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-13 Score=129.57 Aligned_cols=161 Identities=13% Similarity=0.088 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046930 658 TYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGY 736 (965)
Q Consensus 658 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 736 (965)
|.-.+++.|...++.++|+.+|+++++.+ |. ...|+.+.+-|...++...|++.|+.+++- .+-|-..|..|+++|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAY 408 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHH
Confidence 33444445555555555555555555533 32 344444555555555555555555555543 133445555555555
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHH
Q 046930 737 CKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEA 815 (965)
Q Consensus 737 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA 815 (965)
.-.+...-|+-.|+++.+ ++| |...|.+|+.+|.+.++.++|+++|.++...| +.+...+..|+..|.+.++.++|
T Consensus 409 eim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 555555555555555554 344 34455555555555555555555555554332 22333344455555555555555
Q ss_pred HHHHHHHHh
Q 046930 816 RSILREMLQ 824 (965)
Q Consensus 816 ~~~~~~~~~ 824 (965)
..+|++.++
T Consensus 486 a~~yek~v~ 494 (559)
T KOG1155|consen 486 AQYYEKYVE 494 (559)
T ss_pred HHHHHHHHH
Confidence 555555444
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-14 Score=148.55 Aligned_cols=587 Identities=14% Similarity=0.083 Sum_probs=320.8
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD 244 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 244 (965)
.+...|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|.
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 4567889999999999999999999999998 9999987777778888999998888888877665 577
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC---CCCHHHHHHHHHHhh
Q 046930 245 EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI---LGDVVTYSTLLHGYI 321 (965)
Q Consensus 245 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~l~~~~~ 321 (965)
..+|..|..+|...||+.. |+...+ ....+...+...|.-..-..++.++ +.........+....
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv 150 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLV 150 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHH
Confidence 8899999999999999776 222222 1122233344444444444443332 222222233334444
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 046930 322 EEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVG-ALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEAL 400 (965)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 400 (965)
..|-++.++++...+-...... +... +++.+.... .+++-..+.+...+ .|++.++..++.+-...|+.+.|.
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHH
Confidence 4555565555554432211110 1111 233332222 23333333333333 488888888888888889999999
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcc
Q 046930 401 EIFDELRRMSIS-SVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLR 479 (965)
Q Consensus 401 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~ 479 (965)
.++.+|.+.+.+ ...-+..++.+ .+....+..+++.|.+.|+.|+..|+...+-.+..+|..........-.....
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 999999888555 33333344433 77788888888888889999999888888877776444222221111111110
Q ss_pred cccchhHHHH-HHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHH----HHhcCCCch
Q 046930 480 SEIYDIICND-VISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMF----VKENGLVEP 554 (965)
Q Consensus 480 ~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 554 (965)
..+..++++. +..-..+.+...-....+.+..-.|...+..+|........ .|+.+....+...+ .+..+...+
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCcchHH
Confidence 1111111111 00011111222222222333333333333333332222221 33322222211111 111111112
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHhhhhcCc-cccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHh
Q 046930 555 MISKFLVQYLCLNDVTNALLFIKNMKEISS-TVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCR 633 (965)
Q Consensus 555 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (965)
++...+ ..+|++...... .+......+.............+.+...
T Consensus 381 a~~~~l------------rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l--------------------- 427 (1088)
T KOG4318|consen 381 AFGALL------------RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL--------------------- 427 (1088)
T ss_pred HHHHHH------------HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh---------------------
Confidence 222211 222222221111 1111111111111111111111111110
Q ss_pred cCCHHHHHHHHHHHHhcC-----C------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 046930 634 EGYVNKALDLCAFAKNKG-----I------TVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLC 702 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~-----~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 702 (965)
+...+...+..+.... . .+-...-+.++..++..-+..+++..-.+....-+ ...|..|+..+.
T Consensus 428 --rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~ 502 (1088)
T KOG4318|consen 428 --RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMD 502 (1088)
T ss_pred --CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHH
Confidence 1111111111111000 0 01112345566666666666666655544433211 267889999999
Q ss_pred ccCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCC-hhHHHHHHHHHHhcCCHH
Q 046930 703 KEGQLLDAKKLFDRMVLK--GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINC-LEPD-KFTVSAVINGFCQKGDME 778 (965)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~ 778 (965)
..++.+.|...+++.... .+..+..-+..+.+.+.+.+...++..++.++.+.- ..|+ ..+..-+.......|+.+
T Consensus 503 ~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe 582 (1088)
T KOG4318|consen 503 LHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQE 582 (1088)
T ss_pred HHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHH
Confidence 999999999999988754 334466677888999999999999999998887642 2333 345566666777889988
Q ss_pred HHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 779 GALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 779 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
.-.+.++-+...|+.-+ ..|+..+.+.++...|.+..+...++..
T Consensus 583 ~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk 627 (1088)
T KOG4318|consen 583 KLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYK 627 (1088)
T ss_pred HHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhc
Confidence 88888887776665542 3456677888999999888888777543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-14 Score=140.45 Aligned_cols=422 Identities=14% Similarity=0.081 Sum_probs=262.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.+...++-|.+.|++++|++.|.++++.. |..+..|..++.+|...|+|++.++.-.++++.+ |.-+.++.....
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHH
Confidence 35566777888888999999999888887 5557788888888888999999888888888865 444568888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE-DR-- 205 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-- 205 (965)
++-..|++++|+.-..-.--.+ | .-|..+- .++.-..+ ..|....++-.+ .+
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~-------------------~-F~n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p 246 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILE-------------------G-FQNASIE-PMAERVLK----KQAMKKAKEKLKENRPP 246 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhh-------------------h-cccchhH-HHHHHHHH----HHHHHHHHHhhcccCCC
Confidence 8888888888765332211000 0 0011110 11110111 112222222222 11
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHhHHHHHHHHHHHC---CC---CC
Q 046930 206 LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCR-RGDLDCAFRLLEDMEKK---GI---KP 278 (965)
Q Consensus 206 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~---g~---~~ 278 (965)
+-|+.....+....+...-. ..+...+...|...-..+-..+.. ...+..|...+.+-... .. ..
T Consensus 247 ~lPS~~fi~syf~sF~~~~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~ 318 (606)
T KOG0547|consen 247 VLPSATFIASYFGSFHADPK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEI 318 (606)
T ss_pred CCCcHHHHHHHHhhcccccc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccccc
Confidence 12333222222222211000 000000000000000000000000 01122222222221110 00 00
Q ss_pred C------HHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 046930 279 S------IVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMC 348 (965)
Q Consensus 279 ~------~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 348 (965)
| ..++......+.-.|+.-.|..-|+.+ +.+...|..+...|...++.++.++.|....+.++ -++.+|
T Consensus 319 d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvY 397 (606)
T KOG0547|consen 319 DAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVY 397 (606)
T ss_pred chhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchh
Confidence 1 112222223334456666665555432 33444477788889999999999999999988773 456678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 046930 349 NILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSG 428 (965)
Q Consensus 349 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (965)
..-...+.-.+++++|..=|++....+ +.+...+..+..+..+.+.++++...|++..+..|..+.+|+..+..+...+
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH
Confidence 778888888899999999999999875 4456678888888889999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCC-------CCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHH
Q 046930 429 MVDMATEVFIELNEKGLS-------LYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSE 501 (965)
Q Consensus 429 ~~~~A~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 501 (965)
+++.|.+.|+..++.... +.+.....++ .+.-.+++..|.+++.+..+.+|... ..+..++.+-.+.|+.+
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKID 554 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHH
Confidence 999999999999875211 1111122222 22234889999999999999988764 67888999999999999
Q ss_pred HHHHHHHHHHh
Q 046930 502 VASELYMFMRK 512 (965)
Q Consensus 502 ~A~~~~~~~~~ 512 (965)
+|+++|++...
T Consensus 555 eAielFEksa~ 565 (606)
T KOG0547|consen 555 EAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.5e-12 Score=122.05 Aligned_cols=205 Identities=16% Similarity=0.241 Sum_probs=149.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH--HhcCChhhH-HHHHHHHHHcCCCCCCHhhHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF--CKIGKPELA-IGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
=+.|++ ...+|.+.++.-+|+.|...+. |.+..+-..+.+.- ....++.-| .+.|-.+...+ ..+..+|
T Consensus 119 E~nL~k-mIS~~EvKDs~ilY~~m~~e~~--~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW--- 190 (625)
T KOG4422|consen 119 ENNLLK-MISSREVKDSCILYERMRSENV--DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW--- 190 (625)
T ss_pred hhHHHH-HHhhcccchhHHHHHHHHhcCC--CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc---
Confidence 345554 5677899999999999999987 77777766665533 333333322 22343443333 2333344
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
+.|...+ ++-+.. +....+|..+|.+.++-...++|.++|.+......
T Consensus 191 -----K~G~vAd---L~~E~~------------------------PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~ 238 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETL------------------------PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG 238 (625)
T ss_pred -----ccccHHH---HHHhhc------------------------CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 2233222 322222 35688999999999999999999999999988878
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhH----HHHHHHHHHHCCCCCCHHH
Q 046930 207 RPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDC----AFRLLEDMEKKGIKPSIVT 282 (965)
Q Consensus 207 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~ 282 (965)
+.+..+||.+|.+-.-.. -.++..+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+
T Consensus 239 kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsS 314 (625)
T KOG4422|consen 239 KVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSS 314 (625)
T ss_pred eeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhh
Confidence 889999999987644332 26888999998899999999999999999998765 5678889999999999999
Q ss_pred HHHHHHHHHhcCCcch
Q 046930 283 YNTIINGLCKVGRTSD 298 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~~ 298 (965)
|..++..+.+.++..+
T Consensus 315 yh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 315 YHLIIKNFKRESDPQK 330 (625)
T ss_pred HHHHHHHhcccCCchh
Confidence 9999998888777654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-12 Score=124.07 Aligned_cols=455 Identities=12% Similarity=0.068 Sum_probs=273.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchH
Q 046930 220 FCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDA 299 (965)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 299 (965)
+....++..|+.+++--...+-.....+-.-+..++.+.|++++|...+.-+... -.++...+..|..++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHH
Confidence 4445566677666665543332211122233445667888888888888877664 345666777777777778888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCccc
Q 046930 300 EEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVAN 379 (965)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 379 (965)
..+....+.++.....++..-.+.++-++.....+.+... ...-.+|.......-.+++|++++.+++..+ |+
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~e 183 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PE 183 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hh
Confidence 8888888777777777777777777777766665555332 2333445555556667899999999988754 55
Q ss_pred HHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 046930 380 SVTYS-TMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQA 458 (965)
Q Consensus 380 ~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (965)
....+ .+.-+|.+..-++-+.++++-.++..|+++.+.+..+....+.=.-..|..-.+.+.+.+ ..... .+.-
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~-~~~~~----f~~~ 258 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI-DQEYP----FIEY 258 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc-cccch----hHHH
Confidence 44444 345567788888888888888888888888888887776665444344444444444332 11100 0000
Q ss_pred HHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhh
Q 046930 459 TFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLI 538 (965)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 538 (965)
+++. +-. .+ .+-+.|++++
T Consensus 259 l~rH----------------NLV------------vF--rngEgALqVL------------------------------- 277 (557)
T KOG3785|consen 259 LCRH----------------NLV------------VF--RNGEGALQVL------------------------------- 277 (557)
T ss_pred HHHc----------------CeE------------EE--eCCccHHHhc-------------------------------
Confidence 0000 000 00 0111222221
Q ss_pred hhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCC
Q 046930 539 GPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPC 618 (965)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 618 (965)
-.+.+-+
T Consensus 278 -----------------------------------------------------------------------P~L~~~I-- 284 (557)
T KOG3785|consen 278 -----------------------------------------------------------------------PSLMKHI-- 284 (557)
T ss_pred -----------------------------------------------------------------------hHHHhhC--
Confidence 1111111
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhCCCCCC-
Q 046930 619 MDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGC-------FVEAFRLFDSLERIDMVPS- 690 (965)
Q Consensus 619 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~- 690 (965)
+.+-..++-.|.+.+++++|..+.+++. +.++.-|..-+-.++..|+ ..-|.+.|+-.-+.+..-|
T Consensus 285 --PEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 285 --PEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred --hHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 2233344555666677777766655542 1233333333333333332 3445555554433333333
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHH-HHHHH
Q 046930 691 EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTV-SAVIN 769 (965)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~ 769 (965)
..--.++...+.-..++++.+.+++.+..- +..|.....+++.+++..|.+.+|+++|-++....++ |..+| ..|+.
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LAr 436 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLAR 436 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHH
Confidence 222334455555566788888888888764 4445555567889999999999999999877643222 34455 55678
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccH
Q 046930 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESV 844 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (965)
+|.+.+..+-|.+++-++ +-..+..+ +..+++.|++.|.+--|.+.|+.+.. ++|+++.|
T Consensus 437 Cyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~------------lDP~pEnW 497 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI------------LDPTPENW 497 (557)
T ss_pred HHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc------------cCCCcccc
Confidence 889999999999887765 22333334 66677888899999988888887766 67777765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.1e-12 Score=128.43 Aligned_cols=470 Identities=14% Similarity=0.105 Sum_probs=318.5
Q ss_pred cccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.|.....|..++..| ..++|...++..+.+++..+-.+++.+..++ .+...|+-++|.......+..+ +.+..
T Consensus 4 ~~KE~~lF~~~lk~y--E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL--~L~~lg~~~ea~~~vr~glr~d---~~S~v 76 (700)
T KOG1156|consen 4 SPKENALFRRALKCY--ETKQYKKGLKLIKQILKKFPEHGESLAMKGL--TLNCLGKKEEAYELVRLGLRND---LKSHV 76 (700)
T ss_pred ChHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHhCCccchhHHhccc--hhhcccchHHHHHHHHHHhccC---cccch
Confidence 456667888888876 7789999999999999866554555454444 4778899999999999999877 78889
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
+|..+|-.+....+|++|+.+|..++..+ +.|...|.-+.-.-.+.|+++.....-.+.++..
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------------- 139 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------------- 139 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---------------
Confidence 99999999999999999999999999977 6777888888877888999999888888887752
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHH
Q 046930 166 MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR-LRPNLITYTAII------FGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~ 238 (965)
+..-..|..++.++.-.|++..|..++++..+.. -.|+...+.-.. ....+.|.+++|++.+..-..
T Consensus 140 ------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 140 ------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 1345678888888888999999999999998864 235555543322 456677888888888876554
Q ss_pred cCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCcchHH-HHHcCC---CCCHHHH
Q 046930 239 LGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYN-TIINGLCKVGRTSDAE-EVSKGI---LGDVVTY 313 (965)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~a~-~~~~~~---~~~~~~~ 313 (965)
.- ......-..-...+.+.+++++|..++..++.+ .||...|. .+..++.+..+.-++. .++... .|.....
T Consensus 214 ~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 214 QI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP 290 (700)
T ss_pred HH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence 31 222233344557788999999999999999988 45555444 4444443333333333 343322 1211111
Q ss_pred HHHHHHhhhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH---H-HHHHHHHchhCC----------Ccc
Q 046930 314 STLLHGYIEEDNV-NGILETKQRLEEAGIQMDIVMCNILIKALFMVGALE---D-ARALYQAMPEMN----------LVA 378 (965)
Q Consensus 314 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~-A~~~~~~~~~~~----------~~~ 378 (965)
..+--....-.++ +..-.++....+.|+++- +..+...|-.....+ + +..+...+...+ -+|
T Consensus 291 ~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 291 RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred hhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 1111111111222 223345556666665542 223333222111111 1 111111111110 135
Q ss_pred cHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 046930 379 NSV--TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIIL 456 (965)
Q Consensus 379 ~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 456 (965)
... ++..++..+-..|+++.|...++.+..+.|.-+..|..-++.+...|++++|..++++..+.+ .+|...-..-.
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcA 446 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCA 446 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHH
Confidence 544 445677888999999999999999999988889999999999999999999999999998764 45555544666
Q ss_pred HHHHHcCChhhHHHHHHHHHhccccc------chhHHHHH--HHHHHhcCcHHHHHHHHHHHHh
Q 046930 457 QATFAKGGVGGVLNFVYRIENLRSEI------YDIICNDV--ISFLCKRGSSEVASELYMFMRK 512 (965)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 512 (965)
.-..+.+..++|..++....+.+... ...+|-.+ +.+|.+.|++..|++-|..+.+
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 66677788888888887776555321 11344433 5667777777777777766544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-12 Score=123.05 Aligned_cols=424 Identities=16% Similarity=0.159 Sum_probs=272.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCChhHH-HHHHHHHHhcCCCCCCc
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYS--FCSQGNMSRA-VEVLELMSDENVKYPFD 83 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~~~~~~ 83 (965)
|.+...=++|++. ..+|...++.-+|.. |++.|++.++.+-..|.+. |....+..-| .+.|-.+...+ ..+
T Consensus 113 ~~~V~~E~nL~km--IS~~EvKDs~ilY~~-m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~---E~S 186 (625)
T KOG4422|consen 113 PLQVETENNLLKM--ISSREVKDSCILYER-MRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG---EDS 186 (625)
T ss_pred chhhcchhHHHHH--HhhcccchhHHHHHH-HHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc---ccc
Confidence 3444455677775 467889999999988 6777788887776555543 3333333322 22333333333 344
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC 163 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~ 163 (965)
...| +.|...+ ++-+. .|.+..++..++..+|+-...+.|.++|++.....
T Consensus 187 ~~sW--------K~G~vAd---L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------------- 237 (625)
T KOG4422|consen 187 TSSW--------KSGAVAD---LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------------- 237 (625)
T ss_pred cccc--------ccccHHH---HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-------------
Confidence 4444 3444333 33332 37788899999999999999999999999987543
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHc
Q 046930 164 GQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEE----AFTVFKKVEDL 239 (965)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~ 239 (965)
.+.+..+||.+|.+-.-. ...++..+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.
T Consensus 238 -------~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei 306 (625)
T KOG4422|consen 238 -------GKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI 306 (625)
T ss_pred -------heeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 356788888888764322 227888899988899999999999999999997765 56777888889
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHhH-HHHHHHHHHHC----CC---CC-CHHHHHHHHHHHHhcCCcchHHHHH-------
Q 046930 240 GLVADEFVYATLIDGVCRRGDLDC-AFRLLEDMEKK----GI---KP-SIVTYNTIINGLCKVGRTSDAEEVS------- 303 (965)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~----g~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~------- 303 (965)
|+.|...+|..+|..+++.++..+ +..++.++... .+ .| |..-+...+..|.+..+.+-|.++.
T Consensus 307 GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 307 GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 999999999999988888877644 44555554431 12 22 3445666777777888877777762
Q ss_pred --cCCCCC---HHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcc
Q 046930 304 --KGILGD---VVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVA 378 (965)
Q Consensus 304 --~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 378 (965)
..++++ ..-|..+....+.....+.....|+.++-.-+-|...+...++++..-.|.++-.-+++..++..|..-
T Consensus 387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 223333 223445566677777888888888888777777788888888888888888888888888887776544
Q ss_pred cHHHHHHHHHHHHHcC-CH--------HH-----HHHHHHHHHh------cCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 379 NSVTYSTMIDGYCKLG-RI--------EE-----ALEIFDELRR------MSISSVACYNCIINGLCKSGMVDMATEVFI 438 (965)
Q Consensus 379 ~~~~~~~l~~~~~~~~-~~--------~~-----A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (965)
+......+...+++.+ +. .. |..+++.... ...-+....+.++-.+.+.|+.++|.+++.
T Consensus 467 r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~ 546 (625)
T KOG4422|consen 467 RSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLG 546 (625)
T ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHH
Confidence 4444444444444433 11 10 1111111110 111245566677777778888888888888
Q ss_pred HHHHCCC----CCCHHhHHHHHHHHHHcCChhhHHHHHHHHH
Q 046930 439 ELNEKGL----SLYVGMHKIILQATFAKGGVGGVLNFVYRIE 476 (965)
Q Consensus 439 ~~~~~~~----~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~ 476 (965)
-+.+.+- .|......-++......++...|+..++-+.
T Consensus 547 l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 547 LFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7755431 2222233344444444455555555554443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.4e-14 Score=129.91 Aligned_cols=252 Identities=13% Similarity=0.116 Sum_probs=184.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHH
Q 046930 627 IVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS----EVSYATLIYNLC 702 (965)
Q Consensus 627 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 702 (965)
|+.-|...|-+|.|+.+|..+.+.+.- -..+...|+..|....++++|+++-.++.+.+-.+. +..|.-|...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 344466667777777777777765322 445667788888888888888888888877654433 233555666666
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhcCCHHHH
Q 046930 703 KEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD--KFTVSAVINGFCQKGDMEGA 780 (965)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A 780 (965)
...+++.|+..+.++.+.+ +..+..-..+++++...|+++.|++.++.+.+. .|+ ..+...|..+|.+.|+.++.
T Consensus 192 ~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 192 ASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 7788999999999998863 334556668899999999999999999999985 565 45788899999999999999
Q ss_pred HHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHH-hh--hcCcH
Q 046930 781 LGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLIS-LC--EQGSI 857 (965)
Q Consensus 781 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~--~~g~~ 857 (965)
+..+.++.+ ..+....-..+........-.+.|...+.+-+. -+|+...++.|+.. +. +.|+.
T Consensus 269 ~~fL~~~~~--~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~------------r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 269 LNFLRRAME--TNTGADAELMLADLIELQEGIDAAQAYLTRQLR------------RKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHHHHHH--ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh------------hCCcHHHHHHHHHhhhccccccch
Confidence 999999976 344444444455544444455666666666555 36777777888775 32 45778
Q ss_pred HHHHHHHHHHhhccCCCcccchhhh--hhhhhhhhhhhccc
Q 046930 858 LEAIAILDEIGYMLFPTQRFGTDRA--IETQNKLDECESLN 896 (965)
Q Consensus 858 ~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 896 (965)
.+-+..+..+........+.|+|.. |..-..+|.|++|.
T Consensus 335 k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CPsC~ 375 (389)
T COG2956 335 KESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCPSCR 375 (389)
T ss_pred hhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCCCcc
Confidence 8888889988777666666676666 99999999999664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-11 Score=130.63 Aligned_cols=461 Identities=12% Similarity=0.007 Sum_probs=246.7
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.-.+.|-.|++-|| +.-|...|.+.|+++...+ +.+.......+..|.+..+|+.|..+.-..-+..+. ......
T Consensus 489 ~~~apaf~~LG~iYr-d~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a-~~~k~n 564 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYR-DSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA-FACKEN 564 (1238)
T ss_pred cchhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH-HHHHhh
Confidence 334456666666653 3336666666666666544 345556666666666666777666664444443311 112233
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
|..++-.|...++...|+..|+.+++.+ |.|...|..++.+|.++|++..|.++|.++....
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr---------------- 626 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR---------------- 626 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC----------------
Confidence 4455666666667777777777776655 5666677777777777777777777776665532
Q ss_pred hhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--
Q 046930 167 VDKGIKPDT-VSYTILLDGFSKEGTIEKAVGILNKMIEDR------LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE-- 237 (965)
Q Consensus 167 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 237 (965)
|+. ..-......-+..|.+.+|+..+...+... ...-..++-.+...+...|-..+|...++..+
T Consensus 627 ------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 627 ------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred ------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 221 111122223445666666666666655320 01111222222222222232333333333222
Q ss_pred -----HcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc--h----HHHHHc--
Q 046930 238 -----DLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTS--D----AEEVSK-- 304 (965)
Q Consensus 238 -----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--~----a~~~~~-- 304 (965)
......+...|-.+.+++ .+|-... .. .|+......+..-.-..+... + +.+.+-
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac----------~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDAC----------YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHH----------HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 111111222222222221 1111111 00 111111111111111111110 0 001000
Q ss_pred -CCCCCHHHHHHHHHHhhh--------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 046930 305 -GILGDVVTYSTLLHGYIE--------EDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMN 375 (965)
Q Consensus 305 -~~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (965)
....+..+|..++..|.+ ..+...|+..+.+.++.. ..+..+|+.|.-. ...|.+.-|...|-+-....
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence 112235566666665543 223347888888877654 3356677776655 66688888877776655443
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH--H--HCCCCCCHHh
Q 046930 376 LVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIEL--N--EKGLSLYVGM 451 (965)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~~ 451 (965)
+....+|..+...+....+++.|...|.......|.+...|..........|+.-++..+|..- . ..|-.++...
T Consensus 847 -p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Y 925 (1238)
T KOG1127|consen 847 -PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQY 925 (1238)
T ss_pred -ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhH
Confidence 4456789999999999999999999999999999999999999988888999998998888772 2 2334455555
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHh---------cccccchhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 046930 452 HKIILQATFAKGGVGGVLNFVYRIEN---------LRSEIYDIICNDVISFLCKRGSSEVASELYMFM 510 (965)
Q Consensus 452 ~~~~l~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (965)
+.........+|+.+.-+.....+-. .+.....-+|...+...-..+.+..|.....+.
T Consensus 926 w~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 926 WLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55555555556665544443333211 112222345555555566666666666665553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.3e-10 Score=113.10 Aligned_cols=624 Identities=12% Similarity=0.068 Sum_probs=344.1
Q ss_pred ccchhhHHHHHHHHHHccCCch-HHHHHHHHHHHhCCCCCCHHhHHHHHHHHH--------hcCChhHHHHHHHHHHhcC
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPE-KALLVLKDCLRNHGTLPSSFTFCSLVYSFC--------SQGNMSRAVEVLELMSDEN 77 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~ 77 (965)
|.+--.|...+.. +.|.+. +-..+|.++++.. +.+...|...+..-. -...|+....+|++.+-.-
T Consensus 24 p~svk~W~RYIe~---k~~sp~k~~~~lYERal~~l--p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m 98 (835)
T KOG2047|consen 24 PFSVKCWLRYIEH---KAGSPDKQRNLLYERALKEL--PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM 98 (835)
T ss_pred chhHHHHHHHHHH---HccCChHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH
Confidence 3444455555553 344444 4555788888754 556555555552211 1223555555666554422
Q ss_pred CCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhh
Q 046930 78 VKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVF 157 (965)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (965)
..-+..|...+.....+|+...-...|++++..-++......|...+......+-.+-++.+|++.++
T Consensus 99 ---HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--------- 166 (835)
T KOG2047|consen 99 ---HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--------- 166 (835)
T ss_pred ---hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---------
Confidence 12337888888888999999999999999987543333445788888877778888899999999887
Q ss_pred hhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCh---HH
Q 046930 158 YSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR------LRPNLITYTAIIFGFCKKGKL---EE 228 (965)
Q Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~ 228 (965)
.++..-+..+..+.+.+++++|.+.+...+... .+.+...|..+-....+..+. -.
T Consensus 167 ---------------~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln 231 (835)
T KOG2047|consen 167 ---------------VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN 231 (835)
T ss_pred ---------------cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC
Confidence 344556777778888999999999888876431 233455566665555554332 23
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHH-c---
Q 046930 229 AFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVS-K--- 304 (965)
Q Consensus 229 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~--- 304 (965)
...+++.+...-...-...|++|.+-|.+.|.++.|..+|++.... .....-+..+..+|.+-....-+..+- .
T Consensus 232 vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 232 VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEE 309 (835)
T ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4445555554422222357888889999999999999999888765 224445555666665432211111110 0
Q ss_pred CC-CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHH
Q 046930 305 GI-LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTY 383 (965)
Q Consensus 305 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (965)
.. +.+. -+++-.+..|+.+....+ ...| . -++..+ +.+...|
T Consensus 310 ~~n~ed~-------------~dl~~~~a~~e~lm~rr~----~~lN----------------s---VlLRQn-~~nV~eW 352 (835)
T KOG2047|consen 310 SGNEEDD-------------VDLELHMARFESLMNRRP----LLLN----------------S---VLLRQN-PHNVEEW 352 (835)
T ss_pred ccChhhh-------------hhHHHHHHHHHHHHhccc----hHHH----------------H---HHHhcC-CccHHHH
Confidence 00 0000 011111222222222110 0000 0 001111 2233334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 046930 384 STMIDGYCKLGRIEEALEIFDELRRM-SIS-----SVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQ 457 (965)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 457 (965)
..-+. +..|+..+-+..|.++.+. +|. ....|..++..|-..|+++.|..+|++..+-+. .+...+..
T Consensus 353 ~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~ 426 (835)
T KOG2047|consen 353 HKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAE 426 (835)
T ss_pred Hhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHH
Confidence 33332 2344455555555555444 221 233555666666666666666666666554321 11111111
Q ss_pred HHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchh
Q 046930 458 ATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWL 537 (965)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 537 (965)
+|-..+++=.+..+++.|+++.+.+... |+.... .+...+.
T Consensus 427 ----------------------------vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~~-----~~yd~~~--- 467 (835)
T KOG2047|consen 427 ----------------------------VWCAWAEMELRHENFEAALKLMRRATHV---PTNPEL-----EYYDNSE--- 467 (835)
T ss_pred ----------------------------HHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchhh-----hhhcCCC---
Confidence 2222233334445555555555444321 111000 0000000
Q ss_pred hhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCC
Q 046930 538 IGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLP 617 (965)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 617 (965)
|+-.++
T Consensus 468 ----------------pvQ~rl---------------------------------------------------------- 473 (835)
T KOG2047|consen 468 ----------------PVQARL---------------------------------------------------------- 473 (835)
T ss_pred ----------------cHHHHH----------------------------------------------------------
Confidence 000000
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHH
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYAT 696 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 696 (965)
-.+...|...++.....|-++....+|+.++...+. ++.........+....-++++.++|++-+..-.-|+ ...|+.
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t 552 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT 552 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence 013566777777777778888888888888877554 333333344455666778888888888777543455 345555
Q ss_pred HHHHHHc---cCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHH
Q 046930 697 LIYNLCK---EGQLLDAKKLFDRMVLKGFKPSTR--IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD--KFTVSAVIN 769 (965)
Q Consensus 697 l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~ 769 (965)
.+.-+.+ ...++.|..+|+++++ |++|... .|-..+..=.+.|....|+.+|+++... +.+. ...||..+.
T Consensus 553 YLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 553 YLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 5544332 3467889999999888 6776533 2223333334568888888888887653 5553 246666665
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCChHH---HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLG---FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
--...=-+....++|+++++ .-|+... ....+..=++.|..+.|..+|...-+-
T Consensus 631 kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 631 KAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 44333334566778888876 3555433 333455556789999999888877663
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-10 Score=120.15 Aligned_cols=155 Identities=10% Similarity=0.034 Sum_probs=88.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRV 136 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (965)
+...+++...++..+.+++.. |...+++...|-.+...|+-++|.......++.+ +.+...|..++-.+....++
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~---~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKF---PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhC---CccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhH
Confidence 445567777777777777755 5666666666667777777777777777666654 45555666666666666666
Q ss_pred hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046930 137 NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAI 216 (965)
Q Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 216 (965)
++|+++|+.++..+ +.|...|.-+.-.-.+.|+++.....-...++..+. ....|...
T Consensus 92 ~eaiKcy~nAl~~~---------------------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~ 149 (700)
T KOG1156|consen 92 DEAIKCYRNALKIE---------------------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGF 149 (700)
T ss_pred HHHHHHHHHHHhcC---------------------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHH
Confidence 67777666666542 123444444433344455555555555555443211 33444444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 046930 217 IFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
+.++.-.|++..|..+.++..+
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-11 Score=131.72 Aligned_cols=486 Identities=11% Similarity=-0.028 Sum_probs=283.9
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHH
Q 046930 26 DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIG 105 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 105 (965)
+...|...|-++++.+ +.-..+|..|+..|...-+...|.++|+.+.+.+ +.+.+++......|....+++.|..
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHH
Confidence 3667777787877755 3456778888888888888899999999999998 7888999999999999999999998
Q ss_pred HHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHH
Q 046930 106 FFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGF 185 (965)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 185 (965)
..-..-+..+...-...|...+-.|...+++..|+.-|+...+..| .|...|..++.+|
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP---------------------kD~n~W~gLGeAY 606 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP---------------------KDYNLWLGLGEAY 606 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc---------------------hhHHHHHHHHHHH
Confidence 8555544331122233566677778888999999999999887542 6788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhcC
Q 046930 186 SKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG------LVADEFVYATLIDGVCRRG 259 (965)
Q Consensus 186 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g 259 (965)
...|++..|..+|.++...++. +...-.......+..|.+.+|+..+....... ...-..++..+...+.-.|
T Consensus 607 ~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~g 685 (1238)
T KOG1127|consen 607 PESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITG 685 (1238)
T ss_pred HhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999988775322 22222233445667799999999988876432 0011122322322233333
Q ss_pred CHhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHH---HHHHHHHHhhhcCCh---
Q 046930 260 DLDCAFRLLEDMEK-------KGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVV---TYSTLLHGYIEEDNV--- 326 (965)
Q Consensus 260 ~~~~A~~~~~~~~~-------~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~l~~~~~~~~~~--- 326 (965)
-...|..++++.++ .....+...|..+..++ .+|-.+.|+.+ ....+..-....+..
T Consensus 686 f~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac----------~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~ 755 (1238)
T KOG1127|consen 686 FQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC----------YIFSQEEPSIVNMHYLIILSKQLEKTGALKKN 755 (1238)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH----------HHHHHhcccchHHHHHHHHHHHHHhcccCcch
Confidence 33344444433322 21112333333333322 22322223311 111111111111111
Q ss_pred h---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCC
Q 046930 327 N---GILETKQRLEEAGIQMDIVMCNILIKALFM--------VGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGR 395 (965)
Q Consensus 327 ~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (965)
+ -+.+.+-.-.. ...++.+|..|+..|.+ ..+...|+..+.+.++.. ..+..+|+.|.-. ...|+
T Consensus 756 d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gn 831 (1238)
T KOG1127|consen 756 DLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGN 831 (1238)
T ss_pred hHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccch
Confidence 1 11111111111 11223444444444433 122345677777766643 3455667766654 55677
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-HHcCChhhHHHHHHH
Q 046930 396 IEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQAT-FAKGGVGGVLNFVYR 474 (965)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~a~~~~~~ 474 (965)
+.-|...|-+.....|....+|..++..+.+..+++-|...|...... .|+....+....-+ ...|+.-+...++..
T Consensus 832 va~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 832 VACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 878888887777777888888888888888888888888888887754 45444433322222 223444444444443
Q ss_pred HHhcccc----cchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcC
Q 046930 475 IENLRSE----IYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENG 550 (965)
Q Consensus 475 ~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (965)
-...... .....|-........+|+.++-+..- ++...+.-.++.++..++
T Consensus 910 s~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~-------------------------~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 910 SDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA-------------------------RKISSASLALSYYFLGHP 964 (1238)
T ss_pred hHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh-------------------------hhhhhhHHHHHHHHhcCc
Confidence 2221111 11123333333344444433333222 223334445667777777
Q ss_pred CCchHHHHHHHHHHhhhcHHHHHHHHHhh
Q 046930 551 LVEPMISKFLVQYLCLNDVTNALLFIKNM 579 (965)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 579 (965)
....++...+...-..+.+.+|.....+.
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777766553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-12 Score=129.05 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=124.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 046930 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIY 699 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 699 (965)
-..+|-..+..|+-.|..|+|+..|..+.+. .+-..-.+--++.-|.+.++++.|.++|.++.... +.|+...+-+.-
T Consensus 345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgv 422 (611)
T KOG1173|consen 345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGV 422 (611)
T ss_pred ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhh
Confidence 3556777777777777777777777766554 11122233335566777888888888888877643 344667777776
Q ss_pred HHHccCChHHHHHHHHHHHHC--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHH
Q 046930 700 NLCKEGQLLDAKKLFDRMVLK--GFKP----STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFC 772 (965)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 772 (965)
+....+.+.+|..+|+..+.. ...+ -..++++|+.+|.+++++++|+..+++.+.. .| +..++.+++-.|.
T Consensus 423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYH 500 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHH
Confidence 677778888888888877631 1111 2345788888899999999999999888874 55 6778888888888
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCChHHHH
Q 046930 773 QKGDMEGALGFFLDFNTKGVSPDFLGFL 800 (965)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 800 (965)
..|+++.|++.|.+. ..+.|+..+..
T Consensus 501 llgnld~Aid~fhKa--L~l~p~n~~~~ 526 (611)
T KOG1173|consen 501 LLGNLDKAIDHFHKA--LALKPDNIFIS 526 (611)
T ss_pred HhcChHHHHHHHHHH--HhcCCccHHHH
Confidence 889999999999988 44888876533
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-16 Score=159.58 Aligned_cols=259 Identities=17% Similarity=0.159 Sum_probs=111.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhccC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 046930 591 NVLKKLLKAGSVLDVYKLVMGAEDSL-PCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQ 669 (965)
Q Consensus 591 ~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 669 (965)
..+..+...|+++.|++++....... |+.|+..|..++......++++.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556666677777777775444444 5678888888898999999999999999999987544 56677777777 789
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 046930 670 GCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK-GFKPSTRIYNSFIDGYCKFGQLEEAFKF 748 (965)
Q Consensus 670 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 748 (965)
+++++|.+++.+..+.. +++..+..++..+...++++++.++++.+... ..+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876643 56667778888899999999999999998764 3456788899999999999999999999
Q ss_pred HHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 749 LHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 749 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
++++++. .|+ ......++..+...|+.+++.++++...+.. .++...+..++.++...|+.++|+.+|+++++
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--- 242 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--- 242 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH---
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc---
Confidence 9999984 785 6788899999999999999988888886532 33444577899999999999999999999998
Q ss_pred chhhhhcccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHh
Q 046930 828 VLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIG 868 (965)
Q Consensus 828 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 868 (965)
..| ++.....++..+...|+.++|.++++++.
T Consensus 243 ---------~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 ---------LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ---------HSTT-HHHHHHHHHHHT----------------
T ss_pred ---------ccccccccccccccccccccccccccccccccc
Confidence 344 56677888889999999999999988764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-09 Score=114.37 Aligned_cols=457 Identities=14% Similarity=0.013 Sum_probs=264.9
Q ss_pred HhhhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcC
Q 046930 319 GYIEEDNVNGILETK----QRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLG 394 (965)
Q Consensus 319 ~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 394 (965)
.+....+.++++-.. .++....+..|...|..|.-++.+.|+++.+.+.|++....- ......|..+...+...|
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag 371 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAG 371 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhc
Confidence 344455555554332 223333455677888888888888899988888888876532 234567888888888888
Q ss_pred CHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC--C----CCCCHHhHHHHHHHHHHc---
Q 046930 395 RIEEALEIFDELRRMS--ISSVACYNCIINGLC-KSGMVDMATEVFIELNEK--G----LSLYVGMHKIILQATFAK--- 462 (965)
Q Consensus 395 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~--~----~~~~~~~~~~~l~~~~~~--- 462 (965)
.-..|..+++...... |+++..+......|. +.+.+++++.+..+++.. + +.|-...+..+.......
T Consensus 372 ~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 372 SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence 8888888888877664 656666655555554 457788888887777762 1 122222111111111110
Q ss_pred ------CChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcch
Q 046930 463 ------GGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKW 536 (965)
Q Consensus 463 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 536 (965)
....++++.+++..+.++..+..+| .+..-|...++.+.|....++.++.+...+...|.-+...+...+++.
T Consensus 452 ~~seR~~~h~kslqale~av~~d~~dp~~if-~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQFDPTDPLVIF-YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCchHHH-HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 0123455555565555655553333 344446666777777777777666655555555555555555555555
Q ss_pred hhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccC
Q 046930 537 LIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSL 616 (965)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 616 (965)
.+..+....+.+.|.+-....-.+..-.. .++.+++......+..-.
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~---------------------------------~~~~e~~l~t~~~~L~~w 577 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELT---------------------------------FNDREEALDTCIHKLALW 577 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhh---------------------------------cccHHHHHHHHHHHHHHH
Confidence 55555555555544433222222222222 344444443333322111
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC--CC--
Q 046930 617 PCMDVVDYSTIVAALCREGYVNKALDLCAFAKNK--GITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMV--PS-- 690 (965)
Q Consensus 617 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 690 (965)
.. . ......++-.........+.-. .......++..+.......+ ..+..-.. +-+.... |+
T Consensus 578 e~--------~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 578 EA--------E-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSL 645 (799)
T ss_pred Hh--------h-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCch
Confidence 00 0 0000111111122222221111 11111223332222221111 11000000 1111111 22
Q ss_pred ----HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHH
Q 046930 691 ----EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVS 765 (965)
Q Consensus 691 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 765 (965)
...|....+.+.+.+..++|.-++.++.+. .+.....|+..+..+...|...+|.+.|..... +.|+ ..+..
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~ 722 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHH
Confidence 223556667788899999999999988875 355677888888999999999999999999987 5886 45888
Q ss_pred HHHHHHHhcCCHHHHHH--HHHHhHhCCCCCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 766 AVINGFCQKGDMEGALG--FFLDFNTKGVSPDF-LGFLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 766 ~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
+++.++.+.|+..-|.. ++..+.+ ++|++ ..|+.|+.++...|+.++|.+.|..+++-..
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 99999999998877777 8888865 77765 4599999999999999999999999988443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-09 Score=112.92 Aligned_cols=778 Identities=14% Similarity=0.165 Sum_probs=400.9
Q ss_pred ccccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 046930 3 KTSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF 82 (965)
Q Consensus 3 ~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (965)
+.+.|-....|..-...+ ..+|+|++|.+.--.+ -.|+--++.+.+..-.+-...|+..--+..|...+..+ |.
T Consensus 353 R~nLaGAe~Lfv~rFneL-faqG~Y~eAAkvAAsS--PrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG---kL 426 (1666)
T KOG0985|consen 353 RANLAGAENLFVRRFNEL-FAQGEYEEAAKVAASS--PRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG---KL 426 (1666)
T ss_pred hcCCccHHHHHHHHHHHH-HhCccHHHHHHHHHhC--chhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc---cc
Confidence 455666666666666766 6778888886643221 11333455565555555566777777888888888877 66
Q ss_pred chHHHHHHHHHHHhcCChhhHHHHHHHHH-----HcCC-C-CCC--H--hh------HHHHHHHHHhcCChhHHHHHHHH
Q 046930 83 DNFVCSSVVSGFCKIGKPELAIGFFENAI-----SLGA-L-KPN--V--VS------YTSLVIALCMLGRVNEVNELFVR 145 (965)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~-~-~~~--~--~~------~~~l~~~~~~~~~~~~A~~~~~~ 145 (965)
|..--..+++.-..+|+.+.-..++.+=. +.|. + +-+ . .+ -...+.+++.+|++++++-...+
T Consensus 427 Nk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kK 506 (1666)
T KOG0985|consen 427 NKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKK 506 (1666)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHH
Confidence 66666667777777777555444443211 0010 0 111 0 01 12344555566666665554433
Q ss_pred HHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046930 146 MESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGK 225 (965)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 225 (965)
-|..||.. .++....+ -..+.+.++...+.+... ...-++.+...+...+.
T Consensus 507 -----------------------vGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~ 557 (1666)
T KOG0985|consen 507 -----------------------VGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNL 557 (1666)
T ss_pred -----------------------cCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHh
Confidence 23445533 34444433 577778777777766422 23345566666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHc
Q 046930 226 LEEAFTVFKKVEDLGLVADEFVY-ATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSK 304 (965)
Q Consensus 226 ~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 304 (965)
...+...+-.+.+.+ .|+.... ..++..- ..+-++-|..++ ..+.- +..-+..+...|.+.|-...|++.+.
T Consensus 558 iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~N-L~~aPqVADAIL----gN~mF-tHyDra~IAqLCEKAGL~qraLehyt 630 (1666)
T KOG0985|consen 558 IQQCTSFLLDALKLN-SPDEGHLQTRLLEMN-LVHAPQVADAIL----GNDMF-THYDRAEIAQLCEKAGLLQRALEHYT 630 (1666)
T ss_pred hhhhHHHHHHHhcCC-ChhhhhHHHHHHHHH-hccchHHHHHHH----hcccc-ccccHHHHHHHHHhcchHHHHHHhcc
Confidence 677777666666554 3443322 2222221 223333333332 22111 11225667778888888888887776
Q ss_pred CCCC--CHHHHHH-----HHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC---
Q 046930 305 GILG--DVVTYST-----LLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEM--- 374 (965)
Q Consensus 305 ~~~~--~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 374 (965)
.+.. ....... -+..|...-.++...++++.|...++..+..+...+..-|...=..+..+++|+.....
T Consensus 631 Dl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL 710 (1666)
T KOG0985|consen 631 DLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGL 710 (1666)
T ss_pred cHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhH
Confidence 5421 1111111 12345556667788888888888777777777766666666655556666666665432
Q ss_pred --------CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------------------------CCHHHH-
Q 046930 375 --------NLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSI----------------------------SSVACY- 417 (965)
Q Consensus 375 --------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------------------~~~~~~- 417 (965)
++..|+.+....+.+.++.|++.+..++.++-.--+| .+...|
T Consensus 711 ~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYL 790 (1666)
T KOG0985|consen 711 YYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYL 790 (1666)
T ss_pred HHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHH
Confidence 2345566667778888888888877776654110000 011111
Q ss_pred -----HHHHHHHHhcCCh----------------HHH------------------------------HHHHHHHHHCCCC
Q 046930 418 -----NCIINGLCKSGMV----------------DMA------------------------------TEVFIELNEKGLS 446 (965)
Q Consensus 418 -----~~l~~~~~~~g~~----------------~~A------------------------------~~~~~~~~~~~~~ 446 (965)
...+..|.+.-++ ++. ...++..+..| .
T Consensus 791 yrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~ 869 (1666)
T KOG0985|consen 791 YRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-S 869 (1666)
T ss_pred HHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-C
Confidence 1122223222111 111 11222222222 2
Q ss_pred CCHHhHHHHHHHHHHcCChhhHH----------HHHHHHHhcccccc-------------------hhHHHHHHHHHHhc
Q 046930 447 LYVGMHKIILQATFAKGGVGGVL----------NFVYRIENLRSEIY-------------------DIICNDVISFLCKR 497 (965)
Q Consensus 447 ~~~~~~~~~l~~~~~~g~~~~a~----------~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~ 497 (965)
.|..+++.+...|..+++..+.. ..-+--++.+|... ...+....+.+.+.
T Consensus 870 ~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R 949 (1666)
T KOG0985|consen 870 QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVER 949 (1666)
T ss_pred cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhc
Confidence 33333333333333222211100 00000011111100 01222223333333
Q ss_pred CcHHHHHHHH-----------HHHHhcCC--ccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCc--hHHHHHHHH
Q 046930 498 GSSEVASELY-----------MFMRKRGS--VVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVE--PMISKFLVQ 562 (965)
Q Consensus 498 g~~~~A~~~~-----------~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 562 (965)
.+.+.-.+++ ++....+. .-+++......+++-..+-..+..+++++++-+..... ..+..++..
T Consensus 950 ~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiL 1029 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLIL 1029 (1666)
T ss_pred cChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHH
Confidence 3332222222 11111110 11112222222233333333333333333332222111 011111111
Q ss_pred HHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 046930 563 YLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALD 642 (965)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 642 (965)
-....+.....++.+++..-+ +..++......+-.++|..++.... .+..+.+.|+. .-+.++.|.+
T Consensus 1030 tAikad~trVm~YI~rLdnyD-----a~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1030 TAIKADRTRVMEYINRLDNYD-----APDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYE 1096 (1666)
T ss_pred HHhhcChHHHHHHHHHhccCC-----chhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHH
Confidence 111112222222222221111 1122233344444555555555432 12333333332 2345566655
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 046930 643 LCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGF 722 (965)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (965)
.-++.- .+..|..+..+-.+.|...+|++-|-++ .|+..|...++...+.|.+++-..++..+.++.-
T Consensus 1097 fAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1097 FAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 544432 4567888888888888888888877543 3466788888888888899888888888887755
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHH
Q 046930 723 KPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYL 802 (965)
Q Consensus 723 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 802 (965)
.|.+.+ .|+-+|++.|++.+-++.. .-||..-....+.-|...|.++.|.-+|... ..|..|
T Consensus 1165 E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~L 1226 (1666)
T KOG0985|consen 1165 EPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKL 1226 (1666)
T ss_pred CccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHH
Confidence 665554 6777888888877755433 2677777777788888888888887777654 237778
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCcc------------hhhhhcccccc--ccccHHHHHHHhhhcCcHHHHHHHHHH
Q 046930 803 VKGLCTKGRMEEARSILREMLQSKSV------------LELINRVDIEV--ESESVLNFLISLCEQGSILEAIAILDE 866 (965)
Q Consensus 803 ~~~~~~~g~~~eA~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 866 (965)
+..+...|+++.|++..+++...... .++.+--|++. ..+.+-.++..|...|.++|-+.+++.
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 88888889998888888877654321 12222222222 345567788888889999999998875
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-12 Score=124.33 Aligned_cols=180 Identities=12% Similarity=0.062 Sum_probs=104.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 046930 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIY 699 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 699 (965)
...+|..++.-|...++...|++.|+.+++.++. |-..|..|+++|...+.+.-|+-+|+++.+.. +.|+..|.+|..
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~ 440 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGE 440 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence 4556666666666666666666666666665433 66666666666666666666666666666632 233666666666
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCCCh-hHHHHHHHHHHh
Q 046930 700 NLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKIN----C-LEPDK-FTVSAVINGFCQ 773 (965)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~-~~~~~l~~~~~~ 773 (965)
+|.+.++.++|+++|...+..| ..+...+..|+++|.+.++.++|...|++-++. | +.|.. .+..-|..-+.+
T Consensus 441 CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 441 CYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred HHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 6666666666666666666643 234456666666666666666666666654432 2 12211 122224444556
Q ss_pred cCCHHHHHHHHHHhHhCCCCCChHHHHHHHH
Q 046930 774 KGDMEGALGFFLDFNTKGVSPDFLGFLYLVK 804 (965)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 804 (965)
.+++++|..+...... + .+....-..|..
T Consensus 520 ~~~~~~As~Ya~~~~~-~-~~e~eeak~LlR 548 (559)
T KOG1155|consen 520 MKDFDEASYYATLVLK-G-ETECEEAKALLR 548 (559)
T ss_pred hcchHHHHHHHHHHhc-C-CchHHHHHHHHH
Confidence 6666666665555432 2 444433333433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-14 Score=147.48 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=145.5
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHH
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGF 106 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 106 (965)
..+|+..|.+..... ..+..+...++++|...+++++|..+|+.+.+..+..-.+.+.|...+--+ .+ +-++..
T Consensus 335 ~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~-~v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QD-EVALSY 408 (638)
T ss_pred HHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---Hh-hHHHHH
Confidence 345666665533222 233455555666666666666666666666655532233334443332211 11 112222
Q ss_pred H-HHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHH
Q 046930 107 F-ENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGF 185 (965)
Q Consensus 107 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 185 (965)
+ +..++.+ +..+.+|-.++.+|.-+++++.|+++|+++++.++ ....+|..++.-+
T Consensus 409 Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp---------------------~faYayTLlGhE~ 465 (638)
T KOG1126|consen 409 LAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP---------------------RFAYAYTLLGHES 465 (638)
T ss_pred HHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC---------------------ccchhhhhcCChh
Confidence 2 2223333 44455666666666666666666666666655321 1455555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHH
Q 046930 186 SKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAF 265 (965)
Q Consensus 186 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 265 (965)
.....+|.|...|+.++...++ +-.+|.-++..|.++++++.|+-.|+.+.+.+ +.+.+....+...+.+.|+.++|+
T Consensus 466 ~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 466 IATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred hhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHH
Confidence 5566666666666666543222 23333445555666666666666666666554 334455555555555666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCH
Q 046930 266 RLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDI 345 (965)
Q Consensus 266 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 345 (965)
.++++....... |+ ......+..+...+++++|+..++++.+.- +.+.
T Consensus 544 ~~~~~A~~ld~k-n~------------------------------l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es 591 (638)
T KOG1126|consen 544 QLYEKAIHLDPK-NP------------------------------LCKYHRASILFSLGRYVEALQELEELKELV-PQES 591 (638)
T ss_pred HHHHHHHhcCCC-Cc------------------------------hhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchH
Confidence 666666554333 33 333333334444444555555555554432 2334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 046930 346 VMCNILIKALFMVGALEDARALYQAMPEMN 375 (965)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 375 (965)
..+..++..|.+.|+.+.|+.-|..+.+.+
T Consensus 592 ~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 592 SVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 455555566666666666666665555543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-09 Score=111.42 Aligned_cols=578 Identities=12% Similarity=0.084 Sum_probs=328.8
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
..+..|...++.+..+|+...-...|++++..-+. .....+|-..+......|-++-++..|++.++.. +..-.
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-----P~~~e 173 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-----PEARE 173 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-----HHHHH
Confidence 45678888889999999999999999998876532 2344678888888888999999999999999743 33356
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHH
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIE---KAVGILNKM 201 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~ 201 (965)
..+..++..+++++|.+.+..++.... + ....-+.+-..|+.+-....+.-+.- ....+++.+
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~----f----------~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDE----F----------VSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchh----h----------hhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 677778999999999999998875421 0 01112345566777666665543322 234445555
Q ss_pred HHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCCC
Q 046930 202 IEDRLRPN--LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDME-KKGIKP 278 (965)
Q Consensus 202 ~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~~ 278 (965)
+.+ -+| ...|.+|..-|.+.|.+++|.++|++.+.. ..+..-+..+.++|+.-....-+.. ++... +.+-+-
T Consensus 240 i~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~-me~a~~~~~n~e 314 (835)
T KOG2047|consen 240 IRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAK-MELADEESGNEE 314 (835)
T ss_pred ccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHH-HhhhhhcccChh
Confidence 543 234 356889999999999999999999998865 3344555666666654222111111 11010 111111
Q ss_pred CHHHHHHHHHHHHh--cCCcchHHH-HHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 046930 279 SIVTYNTIINGLCK--VGRTSDAEE-VSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKAL 355 (965)
Q Consensus 279 ~~~~~~~l~~~~~~--~g~~~~a~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 355 (965)
+...+...+..+.. .++..-.-. ++..-+.++..|..-+..
T Consensus 315 d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l------------------------------------ 358 (835)
T KOG2047|consen 315 DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL------------------------------------ 358 (835)
T ss_pred hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh------------------------------------
Confidence 11222211111110 011111111 122223333333332222
Q ss_pred HhcCCHHHHHHHHHHchhCCCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 046930 356 FMVGALEDARALYQAMPEMNLVA------NSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISS----VACYNCIINGLC 425 (965)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~ 425 (965)
..|+..+-...|.++.+. +.| -...|..+...|-..|+++.|..+|++..+..-+. ..+|...+.+=.
T Consensus 359 -~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 359 -YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred -hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 234444444444444332 111 12346666666777777777777777766653332 234555555556
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHH
Q 046930 426 KSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASE 505 (965)
Q Consensus 426 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 505 (965)
+..+++.|+++.+......-.|. +. +...+. -+..-+. ....+|...++..-..|-++....
T Consensus 437 rh~~~~~Al~lm~~A~~vP~~~~-------~~-~yd~~~--pvQ~rlh--------rSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATHVPTNPE-------LE-YYDNSE--PVQARLH--------RSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred hhhhHHHHHHHHHhhhcCCCchh-------hh-hhcCCC--cHHHHHH--------HhHHHHHHHHHHHHHhccHHHHHH
Confidence 66667777776666654321111 00 000000 0000000 011355555555556677777777
Q ss_pred HHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCcc
Q 046930 506 LYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISST 585 (965)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 585 (965)
+|++++...+. +
T Consensus 499 vYdriidLria--------------------------------------------------------------------T 510 (835)
T KOG2047|consen 499 VYDRIIDLRIA--------------------------------------------------------------------T 510 (835)
T ss_pred HHHHHHHHhcC--------------------------------------------------------------------C
Confidence 77777664322 2
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCc-hhhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCcccHH-HHH
Q 046930 586 VTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMD-VVDYSTIVAALCR---EGYVNKALDLCAFAKNKGITVNIV-TYN 660 (965)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 660 (965)
+.+..+.+-.+-...-.+++.++++.-...+++++ ..+|+.-+.-+.+ ...++.|..+|++.++ |.+|... +..
T Consensus 511 Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiy 589 (835)
T KOG2047|consen 511 PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 22222233333333344555555555555565554 3567766665554 2478999999999998 4555443 222
Q ss_pred HH-HHHHHhcCcHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCh---hhHHHHHH
Q 046930 661 TV-IHSLCRQGCFVEAFRLFDSLERIDMVPS--EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPST---RIYNSFID 734 (965)
Q Consensus 661 ~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~ 734 (965)
.+ ...-.+.|-...|+++++++... +++. ...|+..+.--...=.+..-.++|+++++. -|+. ......++
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHH
Confidence 22 22234568889999999997763 3333 345666553322333345567889998885 3443 33445677
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCC--ChhHHHHHHHHHHhcCC
Q 046930 735 GYCKFGQLEEAFKFLHDLKINCLEP--DKFTVSAVINGFCQKGD 776 (965)
Q Consensus 735 ~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 776 (965)
.=++.|.++.|..+|.-..+. +.| +...|.+.-.-=.++|+
T Consensus 667 lEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 667 LETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 778899999999999877665 466 44566666555578898
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-14 Score=145.66 Aligned_cols=282 Identities=13% Similarity=0.033 Sum_probs=223.7
Q ss_pred cchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCc-cccchHHHHHHHHhcCCHHHHHHHHHhh
Q 046930 534 KKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISS-TVTIPVNVLKKLLKAGSVLDVYKLVMGA 612 (965)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 612 (965)
+...|...+...-..+.....+..+++..|...+++++|...|+.+++..+ .+.-..-..+.++...+...---+.+.+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 345566666664455566667888999999999999999999999988665 2222222222333333333322333333
Q ss_pred hccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-H
Q 046930 613 EDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-E 691 (965)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~ 691 (965)
.+. .+..+.+|-+++..|.-+++.+.|++.|++.++.++. ...+|+.++.-+.....+|.|...|..++..+ |. -
T Consensus 414 i~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~rhY 489 (638)
T KOG1126|consen 414 IDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD--PRHY 489 (638)
T ss_pred Hhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--chhh
Confidence 333 4457999999999999999999999999999987432 77899999999999999999999999998743 43 4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHH
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVING 770 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 770 (965)
..|..|...|.++++++.|.-.|+++++.+ +-+.+....++..+.+.|+.|+|+.+++++... .| |+.+--..+..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASI 566 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHH
Confidence 566778888999999999999999999853 446778888999999999999999999999984 56 56555566777
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 771 FCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 771 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+...+++++|++.++++++ +.|+..+ +..++..|.+.|+.+.|+..|--|.+
T Consensus 567 l~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 8899999999999999966 8898877 88899999999999999999999987
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-10 Score=124.31 Aligned_cols=83 Identities=13% Similarity=0.160 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 046930 172 KPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATL 251 (965)
Q Consensus 172 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 251 (965)
.|++.+|..++..-...|+.+.|..++.+|.+.|++.+..-|-.|+.+ .++..-+..+++.|...|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 488888888888888888888888888888888887777666666544 67777888888888888888888887766
Q ss_pred HHHHHh
Q 046930 252 IDGVCR 257 (965)
Q Consensus 252 ~~~~~~ 257 (965)
+..+..
T Consensus 278 vip~l~ 283 (1088)
T KOG4318|consen 278 VIPQLS 283 (1088)
T ss_pred HHhhhc
Confidence 655544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-12 Score=127.59 Aligned_cols=510 Identities=11% Similarity=0.012 Sum_probs=286.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
..-+..+.+-+..+.++.-|.-+-+++.... .++.-...+++++.-.|++..|..+...-.-. ..+.......
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~----~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~ 88 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLT----NDPADIYWLAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLA 88 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc----CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHH
Confidence 3445555555666667777777777765553 23344556777777777777777776654321 3566666777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhh-----HH--hhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSC-----WI--CGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILN 199 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----~i--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 199 (965)
+.++.+..+|++|..++.... +..+.+.+-. .+ .+.+...++......+..-..+|....+.++|...|.
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGH---VETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccc---hhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHH
Confidence 777777778887777766321 0011110000 00 0000000111111222222234555566677777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 046930 200 KMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPS 279 (965)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 279 (965)
+++.. |+..+..+...-. ...-.+.+.++.+...... . + ...+.+.-..+|+-...... +
T Consensus 166 ~Al~~----D~~c~Ea~~~lvs--~~mlt~~Ee~~ll~~l~~a----~-------~-~~ed~e~l~~lyel~~~k~~--n 225 (611)
T KOG1173|consen 166 EALLA----DAKCFEAFEKLVS--AHMLTAQEEFELLESLDLA----M-------L-TKEDVERLEILYELKLCKNR--N 225 (611)
T ss_pred HHHhc----chhhHHHHHHHHH--HHhcchhHHHHHHhcccHH----h-------h-hhhHHHHHHHHHHhhhhhhc--c
Confidence 77654 3333332221110 0111222222222221100 0 0 00001111111110000000 0
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 046930 280 IVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVG 359 (965)
Q Consensus 280 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 359 (965)
.. ...+.++ +-+.+...+.........-+....++.+..++.+.+.+.. ++....+..-|..+...|
T Consensus 226 ~~-------~~~r~~~-----~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~ 292 (611)
T KOG1173|consen 226 EE-------SLTRNED-----ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELG 292 (611)
T ss_pred cc-------ccccCch-----hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhc
Confidence 00 0000000 1122333444455555555666667777777777776654 233333444444666666
Q ss_pred CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046930 360 ALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIE 439 (965)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (965)
+..+-..+=..+.+.. |..+.+|..++.-|...|..++|.+.|.+....++.-..+|..++..|...|+.+.|+..+..
T Consensus 293 ~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 293 KSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred ccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 6555555555555542 344567777777777778888888888877777777777788888888888888888877777
Q ss_pred HHHCCCCCCHH-hHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc
Q 046930 440 LNEKGLSLYVG-MHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVT 518 (965)
Q Consensus 440 ~~~~~~~~~~~-~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 518 (965)
+.+. -|..+ -+..+..-|.+.++.+-|..++.+...+.|..+ .+.+.++-.....+.+.+|..+|+..+..-....
T Consensus 372 Aarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp-lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 372 AARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP-LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc-hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence 6653 12211 122233355667777788888877777776543 4566666677788999999999988763211100
Q ss_pred hhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHh
Q 046930 519 DQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLK 598 (965)
Q Consensus 519 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (965)
..
T Consensus 449 ~e------------------------------------------------------------------------------ 450 (611)
T KOG1173|consen 449 NE------------------------------------------------------------------------------ 450 (611)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred cCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHH
Q 046930 599 AGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRL 678 (965)
Q Consensus 599 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 678 (965)
. +.=..+++.|+.+|.+.+.+++|+..|++.+...++ +..++.+++-+|...|+++.|++.
T Consensus 451 -----------------~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 451 -----------------K-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred -----------------c-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHH
Confidence 0 001456788899999999999999999998887544 888999999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHH
Q 046930 679 FDSLERIDMVPSEVSYATLIYNLC 702 (965)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~l~~~~~ 702 (965)
|.+.+- +.|+..+-..++..+.
T Consensus 512 fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 512 FHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHh--cCCccHHHHHHHHHHH
Confidence 999877 5677655555554443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-10 Score=120.00 Aligned_cols=422 Identities=15% Similarity=0.074 Sum_probs=256.3
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHhHH
Q 046930 375 NLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLY-VGMHK 453 (965)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~ 453 (965)
.+..+..+|..+.-+....|+++.+.+.|++...........|+.+...|...|....|..+++........|+ ...+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34567888999999999999999999999999887777888999999999999999999999998776532343 33344
Q ss_pred HHHHHHHHc-CChhhHHHHHHHHHhc----ccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHH
Q 046930 454 IILQATFAK-GGVGGVLNFVYRIENL----RSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKG 528 (965)
Q Consensus 454 ~~l~~~~~~-g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (965)
..-..|.+. +.++++++...++... ........+..++-+|...- ...+.. +
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A------------~~a~~~----s------- 454 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA------------RQANLK----S------- 454 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh------------hcCCCh----H-------
Confidence 444444332 4455555555444331 11111122222222211100 000000 0
Q ss_pred HHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHH
Q 046930 529 LDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKL 608 (965)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 608 (965)
.+..........++..++..+.+..++..+...|...++.++|+...+...+.
T Consensus 455 -eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-------------------------- 507 (799)
T KOG4162|consen 455 -ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-------------------------- 507 (799)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh--------------------------
Confidence 00000112223344444455555555556666666666666666555554443
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--C
Q 046930 609 VMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI--D 686 (965)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~ 686 (965)
.+..+...|..++..+...+++.+|+.+.+..... .+.|......-+..-...++.++|+.....++.. .
T Consensus 508 -------~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~ 579 (799)
T KOG4162|consen 508 -------NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEA 579 (799)
T ss_pred -------cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHh
Confidence 33456777877777777788888888888776654 1112222222233333456666666555554331 0
Q ss_pred CCCCHhhHH--HHHHH----HHccCChHHHHHHHHHHHH--------CC---------CCC--C------hhhHHHHHHH
Q 046930 687 MVPSEVSYA--TLIYN----LCKEGQLLDAKKLFDRMVL--------KG---------FKP--S------TRIYNSFIDG 735 (965)
Q Consensus 687 ~~~~~~~~~--~l~~~----~~~~g~~~~A~~~~~~~~~--------~~---------~~~--~------~~~~~~l~~~ 735 (965)
..+-..+.. .+... ....++..+|.+....+.. .| ..| + ...|...++.
T Consensus 580 ~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~ 659 (799)
T KOG4162|consen 580 EYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADL 659 (799)
T ss_pred hhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHH
Confidence 000000000 00000 0011122222222222110 01 111 1 2345677888
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHH
Q 046930 736 YCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRME 813 (965)
Q Consensus 736 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~ 813 (965)
+.+.+..++|.-.+.++... .| ....|...+..+...|..++|.+.|..... +.|+..- ...++.++.+.|+..
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcc
Confidence 88999999999888888774 55 566788888888999999999999999855 8898765 888999999999877
Q ss_pred HHHH--HHHHHHhcCcchhhhhcccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHhhc
Q 046930 814 EARS--ILREMLQSKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYM 870 (965)
Q Consensus 814 eA~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 870 (965)
-|.. ++..+++ .+| +.+.|+.++..+.+.|+.++|-+.|+....-
T Consensus 736 la~~~~~L~dalr------------~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 736 LAEKRSLLSDALR------------LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHh------------hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7777 9999998 455 5778999999999999999999999976543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-10 Score=118.89 Aligned_cols=584 Identities=15% Similarity=0.095 Sum_probs=274.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 046930 217 IFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRT 296 (965)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 296 (965)
+.+......|.+|+.+++.+.... .-...|-.+.+.|+..|+++-|+++|-+.- .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 334445566666666666655442 122234445566666666666666664321 233445566666666
Q ss_pred chHHHHHcCCC---CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 046930 297 SDAEEVSKGIL---GDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPE 373 (965)
Q Consensus 297 ~~a~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 373 (965)
++|.++-.... .....|..-..-.-..|++.+|.+++-.+. .|+ ..|.+|-+.|..+..+++.++-..
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 66666544331 222333333344455555555555443221 122 234456666666666655544321
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHH
Q 046930 374 MNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHK 453 (965)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 453 (965)
. .-..|...+..-+...|++..|...|-+... |..-..+|...+-|++|.++-+. .| -.+.....
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k~v 943 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEKHV 943 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHHHH
Confidence 1 1123445556666666777777666654432 44455556666666665554332 11 11211111
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcC
Q 046930 454 IILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEG 533 (965)
Q Consensus 454 ~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 533 (965)
.++ +.++-+-+.|..++.+. .+...-++.-+..+.++-|..+-+-..+...
T Consensus 944 ~fl--waksiggdaavkllnk~---------gll~~~id~a~d~~afd~afdlari~~k~k~------------------ 994 (1636)
T KOG3616|consen 944 AFL--WAKSIGGDAAVKLLNKH---------GLLEAAIDFAADNCAFDFAFDLARIAAKDKM------------------ 994 (1636)
T ss_pred HHH--HHHhhCcHHHHHHHHhh---------hhHHHHhhhhhcccchhhHHHHHHHhhhccC------------------
Confidence 111 12222222233333221 1111222333444555555554443332211
Q ss_pred cchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcC-ccccchHHH----HHHHHhcC-CHHHHHH
Q 046930 534 KKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEIS-STVTIPVNV----LKKLLKAG-SVLDVYK 607 (965)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~-~~~~a~~ 607 (965)
.....+++....-.|++++|-+.|-...+.+ -++++...+ -...++.| ++++|..
T Consensus 995 -------------------~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~ 1055 (1636)
T KOG3616|consen 995 -------------------GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVE 1055 (1636)
T ss_pred -------------------ccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHH
Confidence 0111222222333455555555554443322 233332221 11333333 3443332
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 046930 608 LVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM 687 (965)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 687 (965)
++.+..+|..|.++-+.--+. . -...+..-.+.-...|++-+|..++-++.
T Consensus 1056 ----------------------mfi~dndwa~aervae~h~~~-~--l~dv~tgqar~aiee~d~~kae~fllran---- 1106 (1636)
T KOG3616|consen 1056 ----------------------MFIHDNDWAAAERVAEAHCED-L--LADVLTGQARGAIEEGDFLKAEGFLLRAN---- 1106 (1636)
T ss_pred ----------------------HhhhcccHHHHHHHHHhhChh-h--hHHHHhhhhhccccccchhhhhhheeecC----
Confidence 344556677766655432211 0 11233333444455666666666554432
Q ss_pred CCCHhhHHHHHHHHHccCChHHHHHHHHH----------------HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046930 688 VPSEVSYATLIYNLCKEGQLLDAKKLFDR----------------MVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHD 751 (965)
Q Consensus 688 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 751 (965)
+|+.. +..|...+-+..|+.+.+. ..++| .-.+..+..-+.-..++|++.+|...+-+
T Consensus 1107 kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~lk 1180 (1636)
T KOG3616|consen 1107 KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLK 1180 (1636)
T ss_pred CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhh
Confidence 34421 2223344444444443322 22333 23455566666777788888888877765
Q ss_pred hhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcch
Q 046930 752 LKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF--LGFLYLVKGLCTKGRMEEARSILREMLQSKSVL 829 (965)
Q Consensus 752 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 829 (965)
+-.. ..+. ..|+.- .+++|.++--+. +.|+. ......+.++-..|..+.|.+++--.-
T Consensus 1181 inrd--st~n---d~l~e~-----~~~kaadl~ikf----l~~d~nme~i~aa~~al~~~~~~e~aael~l~f~------ 1240 (1636)
T KOG3616|consen 1181 INRD--STDN---DALAEH-----CTEKAADLSIKF----LMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD------ 1240 (1636)
T ss_pred hccC--CCCc---HHHHHH-----HHHHHHhhhhhh----cCCccchhhHHhcchhhhcccccHHHHHHHHHhh------
Confidence 5221 1111 122221 234444443332 33433 334445556666777777766553211
Q ss_pred hhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhhhhhhhhhccccc-cccccccccc
Q 046930 830 ELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKLDECESLNAV-ASVASLSNQQ 908 (965)
Q Consensus 830 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 908 (965)
-...-+.++++...|.+|.++.+++...-.+.........+...+++.+.. ++ .-..+..+..
T Consensus 1241 -------------~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli---~vdviaaidl~ie 1304 (1636)
T KOG3616|consen 1241 -------------LSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELI---DVDVIAAIDLMIE 1304 (1636)
T ss_pred -------------hHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCcccccc---chhHHHHHHHHHh
Confidence 123345667778888888888877632111111111111122223333222 22 1222444556
Q ss_pred cCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHH
Q 046930 909 TDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEM 957 (965)
Q Consensus 909 ~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~ 957 (965)
.+.+++++... -+++..|-...|..+.++ +.+.|+..+|+.+|++-
T Consensus 1305 n~qwdk~idta---k~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ 1351 (1636)
T KOG3616|consen 1305 NDQWDKAIDTA---KKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQH 1351 (1636)
T ss_pred cccHHHHHHHH---HhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 77777766443 333445666667777677 99999999999988763
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=153.44 Aligned_cols=261 Identities=20% Similarity=0.180 Sum_probs=106.0
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 046930 15 SLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF 94 (965)
Q Consensus 15 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (965)
.+...+ ...|++++|++.++..+.....+.+...+..++......++++.|+..|++++..+ +.++..+..++..
T Consensus 13 ~~A~~~-~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~---~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLL-YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD---KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccc-
Confidence 455555 68899999999886655433124456667777777788888999999999988877 5566777777777
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC
Q 046930 95 CKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD 174 (965)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 174 (965)
...+++++|.+++++..+. .+++..+...+..+.+.++++++..+++++.... ..+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~ 145 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP-------------------AAPDS 145 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T----------------------T-
T ss_pred ccccccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-------------------CCCCC
Confidence 6888999999888887764 3566677778888888899999998888876531 12457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046930 175 TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDG 254 (965)
Q Consensus 175 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (965)
...|..++..+.+.|+.++|+++|+++++..+. |......++..+...|+.+++..++....+.. +.|...+..+..+
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~ 223 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAA 223 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 778888888888899999999999999887544 67778888888888888888888888877664 4556677788888
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC
Q 046930 255 VCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG 305 (965)
Q Consensus 255 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 305 (965)
+...|+.++|+.+|++..+... .|......++.++...|+.++|..+...
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHT--------------
T ss_pred hccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 8888999999999998887533 2777788888888888888888877653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-12 Score=140.01 Aligned_cols=285 Identities=11% Similarity=-0.006 Sum_probs=210.6
Q ss_pred hhhcHHHHHHHHHhhhhcCccccchHHHHH-HHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 046930 565 CLNDVTNALLFIKNMKEISSTVTIPVNVLK-KLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDL 643 (965)
Q Consensus 565 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 643 (965)
..|+++.|.+......+..+++....-++. .....|+.+.|...+..+....|.............+...|+++.|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 346777777766665555444444443333 4478888888888887776654443233333447788889999999999
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHccCChHHHHHHHHH
Q 046930 644 CAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSE-------VSYATLIYNLCKEGQLLDAKKLFDR 716 (965)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (965)
++.+.+..+. +...+..+...|.+.|++++|++++..+.+....++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9999988644 7788888999999999999999999999986544322 1233333333344455666666666
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh
Q 046930 717 MVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF 796 (965)
Q Consensus 717 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (965)
+.+. .+.++.....++..+...|+.++|.+.+++..+. .|+.... ++.+....++.+++++..+++.+ ..|++
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~ 327 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDT 327 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCC
Confidence 6543 3557888889999999999999999999999873 5565332 23333456999999999999865 67776
Q ss_pred HH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 046930 797 LG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 797 ~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 869 (965)
.. +..++..+.+.|++++|.+.|+++++ ..|+...+..++..+.+.|+.++|.++|++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~------------~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK------------QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 65 77899999999999999999999998 567877777888889999999999999998543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-12 Score=137.63 Aligned_cols=292 Identities=12% Similarity=-0.034 Sum_probs=206.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHH
Q 046930 390 YCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVL 469 (965)
Q Consensus 390 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~ 469 (965)
....|+++.|.+.+.+..+..+.+...+...+.+..+.|+++.|...+.++.+. .|+....
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~----------------- 154 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNIL----------------- 154 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchH-----------------
Confidence 346788888888887777766666666666677777778888888888877654 2333211
Q ss_pred HHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhc
Q 046930 470 NFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKEN 549 (965)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 549 (965)
+.-.....+...|+++.|...++.+.+..
T Consensus 155 ----------------~~~~~a~l~l~~~~~~~Al~~l~~l~~~~----------------------------------- 183 (409)
T TIGR00540 155 ----------------VEIARTRILLAQNELHAARHGVDKLLEMA----------------------------------- 183 (409)
T ss_pred ----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------------
Confidence 01111234566777777777777766632
Q ss_pred CCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHH
Q 046930 550 GLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVA 629 (965)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 629 (965)
|.++.++..++.
T Consensus 184 --------------------------------------------------------------------P~~~~~l~ll~~ 195 (409)
T TIGR00540 184 --------------------------------------------------------------------PRHKEVLKLAEE 195 (409)
T ss_pred --------------------------------------------------------------------CCCHHHHHHHHH
Confidence 446778888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHHHH-HHHH---HHHhcCcHHHHHHHHHHHHhCCC---CCCHhhHHHHHHHHH
Q 046930 630 ALCREGYVNKALDLCAFAKNKGITVNIVTYN-TVIH---SLCRQGCFVEAFRLFDSLERIDM---VPSEVSYATLIYNLC 702 (965)
Q Consensus 630 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 702 (965)
.+...|++++|.+.+..+.+.+.. +...+. .... .....+..+++.+.+..+.+... +.+...+..++..+.
T Consensus 196 ~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 196 AYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI 274 (409)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999987654 322221 1111 11333334444556666555331 136788888899999
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-h--hHHHHHHHHHHhcCC
Q 046930 703 KEGQLLDAKKLFDRMVLKGFKPSTRI---YNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-K--FTVSAVINGFCQKGD 776 (965)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~ 776 (965)
..|++++|.+.+++.++. .|+... .....-.....++.+.+.+.+++..+. .|+ . ....++++.+.+.|+
T Consensus 275 ~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~ 350 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGE 350 (409)
T ss_pred HCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHccc
Confidence 999999999999999986 333331 122222334457889999999998874 664 4 566789999999999
Q ss_pred HHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 777 MEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+++|.+.|++.......|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999644455789998888999999999999999999999865
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-12 Score=140.85 Aligned_cols=289 Identities=10% Similarity=0.005 Sum_probs=215.9
Q ss_pred HHHhhhcHHHHHHHHHhhhhcCccccch-HHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHH
Q 046930 562 QYLCLNDVTNALLFIKNMKEISSTVTIP-VNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKA 640 (965)
Q Consensus 562 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 640 (965)
.....|+++.|.+.+.+..+..+.+... ...+..+...|+.+.|...+.......|.............+...|+++.|
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3455678888888887776665554433 333457778888888888888887666654445555668888999999999
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHH----HHHHHHHccCChHHHHHHHHH
Q 046930 641 LDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYA----TLIYNLCKEGQLLDAKKLFDR 716 (965)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~ 716 (965)
...++.+.+..+. +...+..++..+...|++++|.+.+..+.+.+.. +...+. .........+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999998644 7778899999999999999999999999997643 322222 111122333444445556666
Q ss_pred HHHCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 046930 717 MVLKG---FKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFT---VSAVINGFCQKGDMEGALGFFLDFNTK 790 (965)
Q Consensus 717 ~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (965)
+.+.. .+.++..+..++..+...|+.++|.+.+++..+. .||... ...........++.+.+++.+++..+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk- 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK- 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH-
Confidence 66541 1237889999999999999999999999999985 565432 12222223456888999999999865
Q ss_pred CCCCChH--H-HHHHHHHHhcCCCHHHHHHHHH--HHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHH
Q 046930 791 GVSPDFL--G-FLYLVKGLCTKGRMEEARSILR--EMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILD 865 (965)
Q Consensus 791 ~~~p~~~--~-~~~l~~~~~~~g~~~eA~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 865 (965)
..|+.. . ..++++.+.+.|++++|.++|+ .+++ ..|+.+.+..++..+.+.|+.++|.++++
T Consensus 328 -~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~------------~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 328 -NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK------------EQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred -hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 577666 5 7789999999999999999999 4665 56788778889999999999999999999
Q ss_pred HHh
Q 046930 866 EIG 868 (965)
Q Consensus 866 ~~~ 868 (965)
+..
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 853
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-12 Score=135.38 Aligned_cols=198 Identities=14% Similarity=0.036 Sum_probs=152.2
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHH-------HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIV-------TYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS 690 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 690 (965)
|.++.+...+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++.+-+. .+.+
T Consensus 184 P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~ 262 (398)
T PRK10747 184 PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQ 262 (398)
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCC
Confidence 4567888888889999999999999999998876542221 2333333333444556666666665432 2456
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHH
Q 046930 691 EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVIN 769 (965)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 769 (965)
+.....+...+...|+.++|.+.+++..+. +|+...... .+....|+.+++++.+++..+. .|+ ...+..++.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l--~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgr 336 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLL--IPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQ 336 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHH--HhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 778888999999999999999999999884 556543322 2334558999999999999885 674 567888999
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.+...|++++|.+.|+++.+ ..|+...+..++.++.+.|+.++|..+|++.+.
T Consensus 337 l~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999965 789999988899999999999999999999876
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-10 Score=108.89 Aligned_cols=389 Identities=12% Similarity=0.092 Sum_probs=231.6
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
..+.|+..|+.++.-... .+......+-..++.++...|++++|...|..+...+ .++.+.+..++.++...|.|.
T Consensus 33 ls~rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~---~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD---DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HhcccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC---CCCcccchhHHHHHHHHHHHH
Confidence 456788888887776442 2222233455667777788888888888888877765 556677888888888888888
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL 181 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 181 (965)
+|..+-.++ +.++.....+...-.+.++-++-....+.+.. ....-.+|
T Consensus 109 eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-------------------------~~EdqLSL 157 (557)
T KOG3785|consen 109 EAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-------------------------TLEDQLSL 157 (557)
T ss_pred HHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-------------------------hHHHHHhH
Confidence 888777664 34444455555666667776666655554432 22334456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 046930 182 LDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTA-IIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGD 260 (965)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 260 (965)
.......-.+.+|+++|.+.+.. .|+-...|. +.-+|.+..-++-+.+++.-..+. ++.++...|.......+.=.
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLIN 234 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhc
Confidence 66666666788899999888865 334444443 344566777777777777776665 24445555555544455444
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCCcchHHHHHcCC-CCCHHHHHHHHHHhhhcCChhHHHHHHH
Q 046930 261 LDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK-----VGRTSDAEEVSKGI-LGDVVTYSTLLHGYIEEDNVNGILETKQ 334 (965)
Q Consensus 261 ~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (965)
-..|+.-.+.+.+.+-.. | ..+.-+++ -..-+.|++++.++ ..-+.+...++--|.+.+++.+|+.+.+
T Consensus 235 gr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred cchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh
Confidence 444555555555442211 1 11111122 22445677766544 2234455666777888888888887776
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh-------cCCHHHHHHHHHHchhCCCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 046930 335 RLEEAGIQMDIVMCNILIKALFM-------VGALEDARALYQAMPEMNLVANSV-TYSTMIDGYCKLGRIEEALEIFDEL 406 (965)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~ 406 (965)
.+. +.++.-|..-.-.+.. .....-|.+.|+..-+.+..-|.. --..+...+.-..++++.+-.+..+
T Consensus 310 dl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 310 DLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred hcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 552 2223222222222222 233555666776665554433322 2334455555666778888777777
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 046930 407 RRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQA 458 (965)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (965)
..-...+...-..++.+++..|.+.+|.++|-++....+ .+..+|.+++.-
T Consensus 386 ~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LAr 436 (557)
T KOG3785|consen 386 ESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLAR 436 (557)
T ss_pred HHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHH
Confidence 766666666666788888888888888888877654322 334444444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.2e-11 Score=122.32 Aligned_cols=308 Identities=15% Similarity=0.093 Sum_probs=214.3
Q ss_pred HHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHH
Q 046930 595 KLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVE 674 (965)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 674 (965)
.+...|..+.|.+.+.+... ....+.+-...+.|.+|+.+++.+...+ .-...|..+...|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence 56667777777766654322 1223445556789999999999988763 234456777889999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 046930 675 AFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKI 754 (965)
Q Consensus 675 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 754 (965)
|.++|.+. ..++-.+..|.+.|++++|.++-.+.. |-......|.+-+.-+-+.|++.+|.++|-.+.
T Consensus 784 ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 784 AEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 99999664 235566788999999999999887765 334456677777888899999999999987763
Q ss_pred CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhh
Q 046930 755 NCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF--LGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELI 832 (965)
Q Consensus 755 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~ 832 (965)
.|+. .+..|-+.|..++.+++.++- .|+. .|...++.-|...|++++|...|-++-+
T Consensus 852 ---~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------- 910 (1636)
T KOG3616|consen 852 ---EPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------- 910 (1636)
T ss_pred ---CchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------
Confidence 6665 357888999999999988774 4554 4577788999999999999998866643
Q ss_pred hccccccccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCc---ccchhhhhhhhhhhhhhhcccccccccccccccc
Q 046930 833 NRVDIEVESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQ---RFGTDRAIETQNKLDECESLNAVASVASLSNQQT 909 (965)
Q Consensus 833 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (965)
+..-+..|..++.|++|-.+.+.-.-...... .|-...+-+.+.++...+ +..-..+...|..
T Consensus 911 -----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~---gll~~~id~a~d~ 976 (1636)
T KOG3616|consen 911 -----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH---GLLEAAIDFAADN 976 (1636)
T ss_pred -----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh---hhHHHHhhhhhcc
Confidence 45566677788999999888764211111111 112233345555554444 2233335566777
Q ss_pred CcccccccccccchhcccCCCchhhhHHHHhhhccchHHHHHHHHHHHhccccc
Q 046930 910 DSDVLGRSNYHNVEKISKFHDFNFCYSKVASFCSKGELQKANKLMKEMLSSFKE 963 (965)
Q Consensus 910 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 963 (965)
+.++-|+...+-.++.. .|..+..+. .-+...|++++|-+.|-+++.++.-
T Consensus 977 ~afd~afdlari~~k~k-~~~vhlk~a--~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAAKDK-MGEVHLKLA--MFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred cchhhHHHHHHHhhhcc-CccchhHHh--hhhhhccchhhhhHhhHHHhhcccc
Confidence 77777776555455444 454443332 2388999999999999999887653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-12 Score=118.15 Aligned_cols=233 Identities=14% Similarity=0.115 Sum_probs=172.6
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHhcCChh
Q 046930 23 KRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV-KYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
-++++++|+..|-++++.+ +.+..+...|++.|-++|..+.|+.+.+...+... +......+...+++-|...|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4578888888888888744 55666777888888888888888888888776531 11223456778888888888888
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL 181 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 181 (965)
.|.++|....+.+ ..-..+...++.+|-...+|++|+++.+++.+.+.++..+ .-...|..|
T Consensus 125 RAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----------------eIAqfyCEL 186 (389)
T COG2956 125 RAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----------------EIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----------------HHHHHHHHH
Confidence 8888888887644 3344577788888888888888888888888765433211 013446667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 046930 182 LDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDL 261 (965)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 261 (965)
...+....++++|..++.++.+.+++ .+.+-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 77777778888888888888876544 44455567788888888888888888888876555566777888888888888
Q ss_pred hHHHHHHHHHHHCCC
Q 046930 262 DCAFRLLEDMEKKGI 276 (965)
Q Consensus 262 ~~A~~~~~~~~~~g~ 276 (965)
++....+..+.+...
T Consensus 266 ~~~~~fL~~~~~~~~ 280 (389)
T COG2956 266 AEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHHHHHHHccC
Confidence 888888888877633
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-12 Score=142.74 Aligned_cols=81 Identities=12% Similarity=-0.079 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 046930 63 MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNEL 142 (965)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 142 (965)
+++|...++++++.+ |.++.++..++.++...|++++|+..|+++++.+ |.++..+..++.++...|++++|+..
T Consensus 320 ~~~A~~~~~~Al~ld---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 320 MIKAKEHAIKATELD---HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344444444444444 4444444444444444444444444444444443 33334444444444444444444444
Q ss_pred HHHHHH
Q 046930 143 FVRMES 148 (965)
Q Consensus 143 ~~~~~~ 148 (965)
++++++
T Consensus 395 ~~~Al~ 400 (553)
T PRK12370 395 INECLK 400 (553)
T ss_pred HHHHHh
Confidence 444444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-07 Score=102.44 Aligned_cols=734 Identities=13% Similarity=0.121 Sum_probs=366.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhh
Q 046930 43 TLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVS 122 (965)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 122 (965)
.+.-...|..-.+.+..+|++++|-++-....+.= -.++.+.+..-..=...|++.--+++|..++..+ +-|...
T Consensus 356 LaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgI---LRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG--kLNk~E 430 (1666)
T KOG0985|consen 356 LAGAENLFVRRFNELFAQGEYEEAAKVAASSPRGI---LRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG--KLNKYE 430 (1666)
T ss_pred CccHHHHHHHHHHHHHhCccHHHHHHHHHhCchhh---hcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc--cccHHH
Confidence 33334455666667778888888888776544321 2233344433333344566666666666666655 334333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCC-C----HHHH------HHHHHHHHhcCCH
Q 046930 123 YTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP-D----TVSY------TILLDGFSKEGTI 191 (965)
Q Consensus 123 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~----~~~~------~~l~~~~~~~g~~ 191 (965)
-..+.+.-...|+.+-...++.+=+ +-|++-...-+.| | ..+| +..+.+|+..|++
T Consensus 431 TLEL~RpVL~Q~RkqLlekWl~EdK-------------LeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf 497 (1666)
T KOG0985|consen 431 TLELCRPVLQQGRKQLLEKWLKEDK-------------LECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQF 497 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhhh-------------hhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcch
Confidence 2333333333444333333222110 0001100011111 1 1111 2334455556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 192 EKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
+++.-... +.|..||. -.+++...+ -..+.+.+....+.... +...-++.+...+...+....+...+-+.
T Consensus 498 ~KiilY~k---KvGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLda 568 (1666)
T KOG0985|consen 498 KKIILYAK---KVGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDA 568 (1666)
T ss_pred hHHHHHHH---HcCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 55544433 34677774 344555544 57888888888887653 23445677778888888888888887777
Q ss_pred HHCCCCCCHHHH-HHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC---C---CCC
Q 046930 272 EKKGIKPSIVTY-NTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAG---I---QMD 344 (965)
Q Consensus 272 ~~~g~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~---~~~ 344 (965)
++. ..|+.... +.++..- -.+-.+-|..++-.-.-...-+..+...|.+.|-+..|++.+..+.... + ..+
T Consensus 569 LK~-~~Pd~g~LQTrLLE~N-L~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~ 646 (1666)
T KOG0985|consen 569 LKL-NSPDEGHLQTRLLEMN-LVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLN 646 (1666)
T ss_pred hcC-CChhhhhHHHHHHHHH-hccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCC
Confidence 764 34555433 3333322 2333444444432211111226677888899999999998776653321 0 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CCC
Q 046930 345 IVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM------------SIS 412 (965)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~~~ 412 (965)
+. .+ -.|...-.++++.+.++.|...++..|..+...+..-|...=-.+.-+++|+..... ...
T Consensus 647 pE---wL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~se 722 (1666)
T KOG0985|consen 647 PE---WL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSE 722 (1666)
T ss_pred HH---HH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhcccc
Confidence 11 11 124445567899999999998888888887777777777766667777777765432 234
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH------------CC--------CCCCHHhHHHHHHHHHHcCChhhHHHHH
Q 046930 413 SVACYNCIINGLCKSGMVDMATEVFIELNE------------KG--------LSLYVGMHKIILQATFAKGGVGGVLNFV 472 (965)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~--------~~~~~~~~~~~l~~~~~~g~~~~a~~~~ 472 (965)
++......+.+.++.|++.+..++-++-.- .. +..|.+.+..-+-.|.-.++..+-++.+
T Consensus 723 Dpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~y 802 (1666)
T KOG0985|consen 723 DPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIY 802 (1666)
T ss_pred CchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHH
Confidence 677777888888888888877766544211 00 0111111111111111111111111111
Q ss_pred HHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCC
Q 046930 473 YRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLV 552 (965)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (965)
- .+.+|...+.+... +..-...++.++-+-... .|..|. ..+..-.-+.++.....+.++..+.++.-.
T Consensus 803 V--QkvNps~~p~VvG~----LLD~dC~E~~ik~Li~~v-~gq~~~----deLv~EvEkRNRLklLlp~LE~~i~eG~~d 871 (1666)
T KOG0985|consen 803 V--QKVNPSRTPQVVGA----LLDVDCSEDFIKNLILSV-RGQFPV----DELVEEVEKRNRLKLLLPWLESLIQEGSQD 871 (1666)
T ss_pred H--hhcCCcccchhhhh----hhcCCCcHHHHHHHHHHH-hccCCh----HHHHHHHHhhhhHHHHHHHHHHHHhccCcc
Confidence 1 11222222221111 122222222222221111 111111 122222233333334444444444443333
Q ss_pred chHHHHHHHHHHhhhc-HHH------------------------HHHHHHh------hhhcCccccchHHHHHHHHhcCC
Q 046930 553 EPMISKFLVQYLCLND-VTN------------------------ALLFIKN------MKEISSTVTIPVNVLKKLLKAGS 601 (965)
Q Consensus 553 ~~~~~~~~~~~~~~~~-~~~------------------------A~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 601 (965)
......++..|.-.++ ++. |.-.|++ +......-......++-+.+..+
T Consensus 872 ~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D 951 (1666)
T KOG0985|consen 872 PATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSD 951 (1666)
T ss_pred hHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccC
Confidence 3333333333333221 111 1111110 00001111111223333444444
Q ss_pred HHHH-----------HHHHHhhhcc-C-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHH-----HHHHH
Q 046930 602 VLDV-----------YKLVMGAEDS-L-PCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVT-----YNTVI 663 (965)
Q Consensus 602 ~~~a-----------~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~l~ 663 (965)
.+-. .++++++.+. + ...|+...+.-+.++...+-+.+-++++++++-. |+.++ -|.|+
T Consensus 952 ~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLi 1028 (1666)
T KOG0985|consen 952 PDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLI 1028 (1666)
T ss_pred hHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHH
Confidence 3322 2344444332 2 2246777788889999999999999999998743 33322 23333
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 046930 664 HSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLE 743 (965)
Q Consensus 664 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 743 (965)
-+ +-.-+.....++.+++-..+ .|+ +...+...+-+++|..+|++.- .+....+.|++ .-+.+|
T Consensus 1029 Lt-Aikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ld 1092 (1666)
T KOG0985|consen 1029 LT-AIKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLD 1092 (1666)
T ss_pred HH-HhhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHH
Confidence 33 33345666777777765533 232 2233445666788888877642 24444444443 345566
Q ss_pred HHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 046930 744 EAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREML 823 (965)
Q Consensus 744 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 823 (965)
.|.+..++.-+ +..|..++.+-.+.|...+|++-|-++ .|+..|..++....+.|.|++=++++.-+.
T Consensus 1093 RA~efAe~~n~------p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1093 RAYEFAERCNE------PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred HHHHHHHhhCC------hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66665555432 345667777777777777777766543 133346667777777777777777666555
Q ss_pred hcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHH
Q 046930 824 QSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAI 863 (965)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 863 (965)
++.. +|..+ ..|+.+|.+.+++.|-++.
T Consensus 1161 kk~~----------E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1161 KKVR----------EPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred Hhhc----------Cccch--HHHHHHHHHhchHHHHHHH
Confidence 4321 22222 2355556666666665544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-09 Score=106.32 Aligned_cols=188 Identities=15% Similarity=0.048 Sum_probs=124.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHH
Q 046930 630 ALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLD 709 (965)
Q Consensus 630 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 709 (965)
.+...+++..|+.+-++.++.+.. +...|..-+..+...+++++|.-.|..++... +.+..+|..|+..|...|++.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 344456666676666666665332 44555555666777777777777777776632 2336677777777777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHH-HHHHhcC-CHHHHHHHHHHhhhCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHH
Q 046930 710 AKKLFDRMVLKGFKPSTRIYNSFI-DGYCKFG-QLEEAFKFLHDLKINCLEPDK-FTVSAVINGFCQKGDMEGALGFFLD 786 (965)
Q Consensus 710 A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g-~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (965)
|.-+-+...+. ++.+..+...++ ..+...- --++|.+++++.+. ++|+. .+.+.++..+...|..++++.++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 77766666654 344555555553 3333322 23677777777776 47764 3666777777777888888888887
Q ss_pred hHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 787 FNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 787 ~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.+. ..||......|+..+...+.+++|++.|..++.
T Consensus 464 ~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 744 677777777788888888888888888887776
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-12 Score=111.42 Aligned_cols=200 Identities=20% Similarity=0.153 Sum_probs=163.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
+...++-.|.+.|++..|.+-++++++.+ |.+..+|..++..|.+.|..+.|.+.|+++++.. |.+-.+.|+.+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhH
Confidence 34456667889999999999999999988 7888899999999999999999999999999877 677778888898
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
.+|..|++++|...|+++..... ...-..+|..+.-+..+.|+++.|...|.+.++..+.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~-------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~- 171 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPA-------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ- 171 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCC-------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-
Confidence 89999999999999999887421 1223567778887888899999999999999887654
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
.+.+...+.....+.|++..|...++.....+ .++....-..|..-...|+.+.+.++=.++...
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56667778888888999999999888888776 477888777888888889988888776666654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-10 Score=111.68 Aligned_cols=294 Identities=13% Similarity=0.030 Sum_probs=190.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHH
Q 046930 322 EEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALE 401 (965)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (965)
..|++.+|.+...+..+.+.. ....|..-+.+--+.|+.+.+-.++.++.+..-.++.....+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 357778888877777666533 3455666667777889999999999998876324555667777888889999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccc
Q 046930 402 IFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSE 481 (965)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~ 481 (965)
-.+++.+..|.++........+|.+.|++.....++..+.+.+.-.++..-..-
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le-------------------------- 228 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE-------------------------- 228 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH--------------------------
Confidence 999999999999999999999999999999999999999888754443321111
Q ss_pred cchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHH
Q 046930 482 IYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLV 561 (965)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (965)
T Consensus 229 -------------------------------------------------------------------------------- 228 (400)
T COG3071 229 -------------------------------------------------------------------------------- 228 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHH
Q 046930 562 QYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKAL 641 (965)
Q Consensus 562 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 641 (965)
..+|..+++-....+..+.-.
T Consensus 229 -----------------------------------------------------------~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 229 -----------------------------------------------------------QQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHhccccchHHH
Confidence 111112222122222222223
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 046930 642 DLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKG 721 (965)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (965)
..+++...+ .+.++..-.+++.-+.+.|+.++|.++..+..+....|+ ...+ -.+.+-++...=++..++.++.
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~- 323 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ- 323 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHh-
Confidence 334433332 233444445555566666777777777766666554444 1111 1244556666666666666654
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 722 FKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 722 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
.+.++..+.+|+..|.+.+.+.+|...|+..++ ..|+..+|+.++.++.+.|+.++|.+++++.+-
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 234456666777777777777777777776666 367777777777777777777777777776653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-10 Score=115.43 Aligned_cols=421 Identities=15% Similarity=0.041 Sum_probs=263.6
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
...|||+.|+..|.+++..+ |++...|..-..+|...|+|++|++--.+-++.+ |.=+..|+..|.++.-.|+|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhcccHH
Confidence 47899999999999999876 5688889999999999999999999999999999 566789999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHH---HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCH-HH
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVN---ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT-VS 177 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~ 177 (965)
+|+..|.+-++.+ |.+...+..+..++.......+.. .++..+.. .+..+...........|......|.. ..
T Consensus 88 eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~-~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 88 EAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN-LPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc-ChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999977 667778888888772211110000 01111111 00000000000000000000000000 00
Q ss_pred ---HHHHHHHHHhcCCHH-HHHHHHHHHHH-CCCCC----------------------CHHHHHHHHHHHHhcCChHHHH
Q 046930 178 ---YTILLDGFSKEGTIE-KAVGILNKMIE-DRLRP----------------------NLITYTAIIFGFCKKGKLEEAF 230 (965)
Q Consensus 178 ---~~~l~~~~~~~g~~~-~A~~~~~~~~~-~~~~~----------------------~~~~~~~l~~~~~~~g~~~~A~ 230 (965)
...++.+.......+ .....-..+.. .+..| -..-...++.+..+..+++.|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 000111110000000 00000000000 00000 1122456777888888888899
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHHhcCCcchHHHHH
Q 046930 231 TVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTII-------NGLCKVGRTSDAEEVS 303 (965)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~-------~~~~~~g~~~~a~~~~ 303 (965)
+.+....... .+..-++....+|...|.+...........+.|.+ ....++.+. .+|.+.++++.++..+
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9888888775 45555666667788888888887777777766543 233333333 3445556666666665
Q ss_pred cCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHH
Q 046930 304 KGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTY 383 (965)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (965)
........+ -....+....++++...+...-.++..-... ..-.+.+.+.|++..|+..|.++++.+ +.|...|
T Consensus 322 ~kaLte~Rt----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~-r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 322 QKALTEHRT----PDLLSKLKEAEKALKEAERKAYINPEKAEEE-REKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred HHHhhhhcC----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHH-HHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 432100000 1122233444555554444433332221112 223667888999999999999999887 5667789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHH
Q 046930 384 STMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFA 461 (965)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (965)
.....+|.+.|.+..|++-.+..++.+|+....|..-+.++....++++|++.|.+.++. .|+..-+...+.-|..
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 5776666666665554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-11 Score=122.96 Aligned_cols=205 Identities=17% Similarity=0.133 Sum_probs=170.6
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
......+..++..+...|++++|...++++++.+ |.+..++..++..+...|++++|++.|++++... +.+...+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~ 102 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVL 102 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHH
Confidence 3446678888899999999999999999998887 7788899999999999999999999999999876 6677788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
..++..+...|++++|...|+++..... .......+..+..++...|++++|...|.+..+
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPL-------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccc-------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999999999999999986421 123455677788889999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 204 DRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
..+. +...+..+...+...|++++|...++++.... +.+...+..++..+...|+.++|..+.+.+...
T Consensus 164 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 164 IDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred hCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7543 56778888899999999999999999988773 556667777788888899999999988877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-11 Score=121.11 Aligned_cols=199 Identities=17% Similarity=0.143 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..+..++..+ ...|++++|+..+.+++... +.+...+..++..+...|++++|.+.|+++++.+ |.+..++..+
T Consensus 32 ~~~~~la~~~-~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~ 105 (234)
T TIGR02521 32 KIRVQLALGY-LEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHH
Confidence 3455555544 55566666666666655433 2334455555555566666666666666665554 4455555555
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKG 170 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (965)
+..+...|++++|++.|++++.....+.....+..++.++...|++++|...+.++.+..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------- 165 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-------------------- 165 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------
Confidence 666666666666666666655432112233345555555556666666666666555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 171 IKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 123445555555555566666666666655554 22244444455555555566666555555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-11 Score=106.93 Aligned_cols=209 Identities=16% Similarity=0.076 Sum_probs=177.8
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.....|+-.| .++|++..|...++++++.+ |.+..++..++..|.+.|+.+.|.+.|++++..+ |.+.+++|..
T Consensus 36 ~arlqLal~Y-L~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNY 109 (250)
T COG3063 36 KARLQLALGY-LQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhh
Confidence 3677788888 89999999999999999876 5677788899999999999999999999999998 8999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKG 170 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (965)
+-.+|.+|++++|.+.|++++.....+.-..+|.+++-+..+.|+++.|...|++.++..+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp------------------- 170 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP------------------- 170 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-------------------
Confidence 9999999999999999999998664555566899999999999999999999999998642
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 046930 171 IKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYA 249 (965)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 249 (965)
-.+.+...+.....+.|++-.|...++.....+. ++....-..|+.-...|+.+.+.+.=.++.+. -|....|.
T Consensus 171 --~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 171 --QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred --CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3466777888889999999999999999988876 68888888888888899998888877777665 34444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-10 Score=112.09 Aligned_cols=288 Identities=15% Similarity=0.133 Sum_probs=194.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhH
Q 046930 59 SQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNE 138 (965)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (965)
-.|+|.+|++...+..+.+ +.....|..-+++-...|+++.|-.++.++.+.. -.++........+.+...|+++.
T Consensus 96 ~eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchh
Confidence 4689999999998877776 5556677777788888899999999999988753 13445566677788888999999
Q ss_pred HHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------H
Q 046930 139 VNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNL-------I 211 (965)
Q Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~ 211 (965)
|..-..++.+.++ .++.+......+|.+.|++.....++..+.+.+.-.+. .
T Consensus 172 A~~~v~~ll~~~p---------------------r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~ 230 (400)
T COG3071 172 ARENVDQLLEMTP---------------------RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ 230 (400)
T ss_pred HHHHHHHHHHhCc---------------------CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence 9998888887653 56777888888999999999999999999888765443 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 212 TYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLC 291 (965)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 291 (965)
+|..+++=....+..+.-...++.....- ..++..-..++.-+.++|+.++|.++.++..+++..|+. ..++ .+.
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~-~~l 305 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLI-PRL 305 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHH-hhc
Confidence 34445444444444444455666665442 445666677778888899999999999998888766551 1111 222
Q ss_pred hcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 046930 292 KVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAM 371 (965)
Q Consensus 292 ~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 371 (965)
+-++. ..-++..+...+.. +.++..+..|...|.+.+.|.+|...|+..
T Consensus 306 ~~~d~------------------------------~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 306 RPGDP------------------------------EPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred CCCCc------------------------------hHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333 33333333333332 223455566666666666666666666655
Q ss_pred hhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046930 372 PEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM 409 (965)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (965)
.+. .|+..++..+.+++.+.|+..+|.+++++....
T Consensus 355 l~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 355 LKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred Hhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 553 366666666666666666666666666665533
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.8e-12 Score=130.71 Aligned_cols=249 Identities=16% Similarity=0.151 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhC-----CC-CCCH-hhHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CC
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERI-----DM-VPSE-VSYATLIYNLCKEGQLLDAKKLFDRMVLK-----G-FK 723 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~ 723 (965)
.+...+...|...|+++.|..++++.++. |. .|.. ...+.+...|...+++++|..+|++++.. | -.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566888889999999999998888763 21 2332 33445778899999999999999998762 2 12
Q ss_pred CC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHhC---CC
Q 046930 724 PS-TRIYNSFIDGYCKFGQLEEAFKFLHDLKIN-----CL-EPDK-FTVSAVINGFCQKGDMEGALGFFLDFNTK---GV 792 (965)
Q Consensus 724 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 792 (965)
|. ..+++.|+.+|.+.|++++|...++++.+. |. .|+. ..++.++..+...+++++|+.++.+..+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 457788999999999999999888876543 22 2232 35677888899999999999999987542 12
Q ss_pred CCCh----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccc-cccHHHHHHHhhhcCcHHHHHHHHHHH
Q 046930 793 SPDF----LGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVE-SESVLNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 793 ~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
.+++ .++..|+..|...|+++||.++|+++++...... .+.++. ...+++++..+.+.+++++|.++|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~----~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL----GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc----cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 2332 2388899999999999999999999998532110 011222 336778888898999999999999985
Q ss_pred hhccCCCcccchhhhhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHh-hhccch
Q 046930 868 GYMLFPTQRFGTDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGE 946 (965)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~ 946 (965)
.. .. +..+.. +|+....|..+++ |.+.|+
T Consensus 436 ~~------------------------------------------------i~-~~~g~~-~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 436 KD------------------------------------------------IM-KLCGPD-HPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HH------------------------------------------------HH-HHhCCC-CCchHHHHHHHHHHHHHccc
Confidence 21 11 122233 6777777777777 999999
Q ss_pred HHHHHHHHHHHhc
Q 046930 947 LQKANKLMKEMLS 959 (965)
Q Consensus 947 ~~~A~~~~~~~~~ 959 (965)
+++|+++.+.++.
T Consensus 466 ~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 466 YEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998873
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-11 Score=136.20 Aligned_cols=205 Identities=10% Similarity=0.067 Sum_probs=159.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhc---------CChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKI---------GKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
+.+++|+..|+++++.+ |.++.++..++.++... +++++|...++++++.+ |.+..++..++.++.
T Consensus 275 ~~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~ 349 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 35679999999999998 78888888888776533 34789999999999887 778888888999999
Q ss_pred hcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 046930 132 MLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLI 211 (965)
Q Consensus 132 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 211 (965)
..|++++|+..|+++++.+| .+..++..+..++...|++++|...++++++.++. +..
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P---------------------~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSP---------------------ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred HccCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 99999999999999988642 45677888888899999999999999999987654 333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 046930 212 TYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPS-IVTYNTIINGL 290 (965)
Q Consensus 212 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~ 290 (965)
.+..++..+...|++++|+..++++.+...+.+...+..+..++...|++++|...+.++... .|+ ....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 344445556778999999999999887653335556777788888999999999999887655 233 33445555555
Q ss_pred HhcC
Q 046930 291 CKVG 294 (965)
Q Consensus 291 ~~~g 294 (965)
...|
T Consensus 486 ~~~g 489 (553)
T PRK12370 486 CQNS 489 (553)
T ss_pred hccH
Confidence 6555
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6e-10 Score=105.42 Aligned_cols=335 Identities=12% Similarity=0.131 Sum_probs=229.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh-hHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV-SYT 124 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 124 (965)
+..-..-++..+...|++.+|+.-|..+++.+ |.+..+++..+..|+..|+-.-|+.-+.++++. .||.. +..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d---p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD---PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC---chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHH
Confidence 44446678888999999999999999999999 889999999999999999999999999999985 57765 556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSY--TILLDGFSKEGTIEKAVGILNKMI 202 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 202 (965)
.-+.++.+.|++++|..-|+.++...+..+..--. .....+....| ...+..+...|+...|++....++
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea--------qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA--------QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH--------HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 77888999999999999999999876532211000 00001111122 223344566889999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 046930 203 EDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVT 282 (965)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 282 (965)
+..+- +...|..-..+|...|++..|+.-++.+.+.. ..++.++..+-..+...|+.+.++...++.++. .||...
T Consensus 183 Ei~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~ 258 (504)
T KOG0624|consen 183 EIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKL 258 (504)
T ss_pred hcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchhh
Confidence 86544 77778888889999999999999998888775 456667777778888999999999999998886 455432
Q ss_pred HHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcC
Q 046930 283 YNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMC---NILIKALFMVG 359 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g 359 (965)
... .|-+...+.+.++ -+......+++.++++..+...+..+......+ ..+-.++...+
T Consensus 259 Cf~---~YKklkKv~K~le--------------s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 259 CFP---FYKKLKKVVKSLE--------------SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred HHH---HHHHHHHHHHHHH--------------HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 211 1111111111111 012233456666666666666665443222222 23344455567
Q ss_pred CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 046930 360 ALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVAC 416 (965)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 416 (965)
++.+|++...++++.. +.|..++..-..+|.-..+++.|+.-|+.+.+.++.+..+
T Consensus 322 ~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred CHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 7777777777776643 2335666666777777777777777777777766655543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-12 Score=117.16 Aligned_cols=227 Identities=11% Similarity=0.033 Sum_probs=117.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
+-..++++|.+.|.+.+|.+.|+..++.. +.++++..+.++|.+..++..|+.+|.+.++. +|.++.....+.+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~----~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF----PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcC----CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 33445555555555555555555555543 23344445555555555555555555555543 2444444445555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
++-..++.++|.++|+.+.+.. +-++.+...+...|.-.++.+-|+..|+++++.|+.
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~---------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~- 356 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH---------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ- 356 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC---------------------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-
Confidence 5555555555555555555432 123444444444455555555555555555555554
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD--EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTI 286 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 286 (965)
++..|+.+.-+|.-.++++-++..|.+....--.|+ ..+|..+.......||+..|.+.|+-.+..+.. +...++.|
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNL 435 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNL 435 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhH
Confidence 555555555555555555555555555544322222 234444444445555555555555555544322 34455555
Q ss_pred HHHHHhcCCcchHHHHHc
Q 046930 287 INGLCKVGRTSDAEEVSK 304 (965)
Q Consensus 287 ~~~~~~~g~~~~a~~~~~ 304 (965)
.-.-.+.|+.++|..++.
T Consensus 436 avL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 436 AVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHhhcCchHHHHHHHH
Confidence 555555555555555543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-11 Score=120.23 Aligned_cols=234 Identities=15% Similarity=0.041 Sum_probs=167.2
Q ss_pred cCCchHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPS--SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
.+..+.++..+..++......|+ +..+..++.++...|++++|+..|+++++.+ |.++.+|+.++..+...|+++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHH
Confidence 35557788888888865444333 4567888888999999999999999999998 888999999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL 181 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 181 (965)
+|++.|+++++.+ |.+..+|..++.++...|++++|++.|++..+.+ |+.......
T Consensus 116 ~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----------------------P~~~~~~~~ 171 (296)
T PRK11189 116 AAYEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----------------------PNDPYRALW 171 (296)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------CCCHHHHHH
Confidence 9999999999876 6677788999999999999999999999998764 332211222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CC---CCCHhHHHHHHHHH
Q 046930 182 LDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL---GL---VADEFVYATLIDGV 255 (965)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~ 255 (965)
.......+++++|.+.|.+..... .|+...+ .......|+...+ ..+..+.+. .+ +.....|..+...+
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 222345678999999997766432 2232222 2233345666544 344444421 10 12345788889999
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046930 256 CRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIING 289 (965)
Q Consensus 256 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 289 (965)
.+.|++++|...|++....++.........++..
T Consensus 247 ~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 247 LSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 9999999999999999987544333344444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-09 Score=106.74 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-------H
Q 046930 348 CNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNC-------I 420 (965)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------l 420 (965)
...++++..+..+++.|.+-+....+.. .+..-++....+|...|.+.+.+...+...+.+.....-++. +
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445666666667777777777666643 344445556666777777766666666655554333333333 3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC
Q 046930 421 INGLCKSGMVDMATEVFIELNEKGLS 446 (965)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 446 (965)
+.+|.+.++++.++..|.+.+.....
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 34555567777777777776654333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-08 Score=104.48 Aligned_cols=148 Identities=14% Similarity=0.028 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHH--------HHHhCCCCCCHhhHHHHHHHHHccCCh
Q 046930 636 YVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFD--------SLERIDMVPSEVSYATLIYNLCKEGQL 707 (965)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 707 (965)
.+..|.+++...-+.....+....-.++......|+++.|++++. .+.+.+. .+.+...++..+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCC
Confidence 466666666666555333234455556666677777777777777 4444333 344555666667777776
Q ss_pred HHHHHHHHHHHHC---C--CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 046930 708 LDAKKLFDRMVLK---G--FKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGAL 781 (965)
Q Consensus 708 ~~A~~~~~~~~~~---~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 781 (965)
+.|.+++.+.+.. . .++ -..++.-++..-.+.|+.++|...++++.+.+ .+|..+...++.+|+.. +.++|+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 6676666666541 0 011 12334444555556788888888888888742 44667777788777544 567777
Q ss_pred HHHHHh
Q 046930 782 GFFLDF 787 (965)
Q Consensus 782 ~~~~~~ 787 (965)
.+-..+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.5e-11 Score=125.15 Aligned_cols=252 Identities=21% Similarity=0.205 Sum_probs=193.9
Q ss_pred ccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHh----CCC-CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhc--
Q 046930 5 SFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRN----HGT-LPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDE-- 76 (965)
Q Consensus 5 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 76 (965)
++|.....+..+...| ..+|+++.|+..+.++++. .|. .+. ......++..|...+++.+|+.+|+.+++.
T Consensus 194 ~~P~~~~~~~~La~~y-~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMY-AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CCchHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5678888888888876 8999999999999999986 121 222 233455888999999999999999998773
Q ss_pred ---CCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHc-----CCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 77 ---NVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISL-----GALKPNVV-SYTSLVIALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 77 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~ 147 (965)
+..+|....+++.++.+|.+.|++++|...+++++.. +..+|.+. .+..++..+...+++++|..++++..
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3345777888999999999999999999999998863 11234444 45677788999999999999999887
Q ss_pred HCCCccchhhhhhHHhhhhhhcCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHH
Q 046930 148 SEGLKFDVVFYSCWICGQMVDKGI-K-PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR-------LRPNLITYTAIIF 218 (965)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~ 218 (965)
+.-. + ..|. . --..+++.|...|...|++++|.++|++++... ..-....++.+..
T Consensus 353 ~i~~--~-------------~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 353 KIYL--D-------------APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred HHHH--h-------------hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 6411 0 0111 1 125679999999999999999999999998641 1112455677888
Q ss_pred HHHhcCChHHHHHHHHHHHHc----C--CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 046930 219 GFCKKGKLEEAFTVFKKVEDL----G--LVADEFVYATLIDGVCRRGDLDCAFRLLEDME 272 (965)
Q Consensus 219 ~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 272 (965)
.|.+.+++.+|.++|.+.... | .+....+|..|...|.+.|+++.|.++.+.+.
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 899999999999998876532 2 22335689999999999999999999988876
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-08 Score=98.17 Aligned_cols=419 Identities=10% Similarity=-0.014 Sum_probs=253.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC-----------------CCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENV-----------------KYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGA 115 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 115 (965)
++......+.+..|..-|..++.... -.|.+.+.-...+.+|...++-++|+.......+..
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~- 127 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL- 127 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-
Confidence 33444445566666666665544211 013455666778888999999999988887654321
Q ss_pred CCCCHhhHHHHHHHH-HhcCChhHHHHHHHHHHHCCCc-cchhhhhh---HHhh------hhhhcCCCCCHHHHHHHHHH
Q 046930 116 LKPNVVSYTSLVIAL-CMLGRVNEVNELFVRMESEGLK-FDVVFYSC---WICG------QMVDKGIKPDTVSYTILLDG 184 (965)
Q Consensus 116 ~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~---~i~~------~~~~~~~~~~~~~~~~l~~~ 184 (965)
...-.+.++..+ -+.++..++.--+...+...|- .++. ... .+.+ .|.....+|........+.+
T Consensus 128 ---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i-~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika 203 (564)
T KOG1174|consen 128 ---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVI-EALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKA 203 (564)
T ss_pred ---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHH-HHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHH
Confidence 111222233222 2333443444444444433210 0000 000 0000 22233344444444444444
Q ss_pred HHh--cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 046930 185 FSK--EGTIEKAVGILNKMIED-RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDL 261 (965)
Q Consensus 185 ~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 261 (965)
+++ .++...|...+-.+... -.+-|+.....+...+...|+.++|+..|++....+ +.+........-.+.+.|++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCH
Confidence 433 34444444444333322 245577778888888888899988888888887664 22222233333345677888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC----CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 046930 262 DCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG----ILGDVVTYSTLLHGYIEEDNVNGILETKQRLE 337 (965)
Q Consensus 262 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (965)
+....+...+....- -....|..-+.......+++.|+.+-.+ -+.+...+..-+..+...++.++|.-.|+...
T Consensus 283 e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 888877777765421 1344455555566667777777766432 24566667667777888888888888888877
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhcCCCCHH
Q 046930 338 EAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMI-DGYC-KLGRIEEALEIFDELRRMSISSVA 415 (965)
Q Consensus 338 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~~~~ 415 (965)
... +.+...|.-|+..|...|++.+|..+-...... ++.+..+...++ ..+. ...--++|..++++.+...|.-..
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 654 456778888888888888888887766655442 234455555443 2222 233457888888888888888888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhccccc
Q 046930 416 CYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEI 482 (965)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~ 482 (965)
+.+.++..+...|..+.++.++++.+.. .||...+..+...+...+..+++++.+....+.+|..
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8888888888888888888888888765 6777777777777766666666666666666665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.5e-08 Score=99.23 Aligned_cols=148 Identities=14% Similarity=0.034 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHhcCCH
Q 046930 671 CFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFD--------RMVLKGFKPSTRIYNSFIDGYCKFGQL 742 (965)
Q Consensus 671 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 742 (965)
.+.+|.+++...-.....-...+...++.....+|+++.|++++. .+.+.+..|-.+ ..+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCC
Confidence 466677776666553311223445555566677777777777777 555544444433 3455556665554
Q ss_pred HHHHHHHHHhhhC--C---CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHH
Q 046930 743 EEAFKFLHDLKIN--C---LEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEAR 816 (965)
Q Consensus 743 ~~A~~~~~~~~~~--~---~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~ 816 (965)
+-|..++.+++.. . ..+. ..++.-++..-.+.|+-++|...++++.+.+ .+|......++.+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 4444444333221 0 1222 1233334444456677777777777775522 33444566677777665 556666
Q ss_pred HHHHHH
Q 046930 817 SILREM 822 (965)
Q Consensus 817 ~~~~~~ 822 (965)
.+-.++
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 554443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-10 Score=118.14 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=23.5
Q ss_pred hhhhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 932 NFCYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 932 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
..++.++..|.+.|++++|+..|+++++..|.|
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 345555555888888888888888888877643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-11 Score=111.80 Aligned_cols=228 Identities=12% Similarity=0.028 Sum_probs=187.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 046930 591 NVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQG 670 (965)
Q Consensus 591 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 670 (965)
.+.+.|.+.|-+.+|.+.++......|- +.+|..|..+|.+..++..|+.++.+.++. .+-++.....+.+.+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~--~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH--PDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCc--hhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 4445566666666666666665555554 566777888999999999999999998887 3435555566789999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 046930 671 CFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLH 750 (965)
Q Consensus 671 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 750 (965)
+.++|.++|+...+.. +.+.....++...|.-.++++-|+.+|+++++.| ..++..|++++-+|.-.+++|-++..|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999999854 3456777778888999999999999999999998 4588899999999999999999999999
Q ss_pred HhhhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 751 DLKINCLEPD--KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 751 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
+++...-.|+ ..+|.+|.......|++.-|.+.|+-.+. ..|++.. +++|+..-.+.|++++|..++..+...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9987654565 46899999999999999999999998854 4566544 999998889999999999999988773
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-08 Score=106.30 Aligned_cols=295 Identities=15% Similarity=0.076 Sum_probs=150.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc--
Q 046930 181 LLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR-- 258 (965)
Q Consensus 181 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 258 (965)
...++...|++++|++.++.-... +......+......+.+.|+.++|..+|+.+++.+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 344578899999999999886654 33244555677889999999999999999999987 45555666666655222
Q ss_pred ---CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHH
Q 046930 259 ---GDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQR 335 (965)
Q Consensus 259 ---g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 335 (965)
.+.+....+++++...- |.......+.-.+.....+.... ...+..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~-----------------------------~~yl~~ 136 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERL-----------------------------DEYLRP 136 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHH-----------------------------HHHHHH
Confidence 24666777788776652 32222222221111111111111 111222
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC--------------CCcccH--HHHHHHHHHHHHcCCHHHH
Q 046930 336 LEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEM--------------NLVANS--VTYSTMIDGYCKLGRIEEA 399 (965)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~--~~~~~l~~~~~~~~~~~~A 399 (965)
++..|+| .+++.|-..|......+-...++...... .-+|.. .++..+...|...|++++|
T Consensus 137 ~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 2233322 12222222222222222222222221100 011222 1233344444555555555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcc
Q 046930 400 LEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLR 479 (965)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~ 479 (965)
++.+++++++.|..+..|..-++.+.+.|++.+|...++.....+ .-|...-......+.+.|..++|...+....+.+
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 555555555555555555555555555555555555555554442 2333333334444445555555555554443333
Q ss_pred ccc----c--h--hHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 046930 480 SEI----Y--D--IICNDVISFLCKRGSSEVASELYMFMRK 512 (965)
Q Consensus 480 ~~~----~--~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 512 (965)
.+. . . ......+.+|.+.|++..|++.|..+.+
T Consensus 293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 0 0 2223557788999999999999887765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-09 Score=100.74 Aligned_cols=314 Identities=12% Similarity=0.080 Sum_probs=215.0
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhh
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSC 160 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (965)
|.+..-...++..++..|++.+|+..|-.+++.+ |.+-.++..-+..|...|+-..|+.-+.++++.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel----------- 101 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL----------- 101 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-----------
Confidence 6677788899999999999999999999999865 455557888888999999999999999999985
Q ss_pred HHhhhhhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHH------------HHHHHHhcCC
Q 046930 161 WICGQMVDKGIKPDTV-SYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN--LITYTA------------IIFGFCKKGK 225 (965)
Q Consensus 161 ~i~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~------------l~~~~~~~g~ 225 (965)
.||-. +-..-...+.++|.+++|..-|+..+...+.-+ ...+.. .+..+...|+
T Consensus 102 -----------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 102 -----------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred -----------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 45532 223344568899999999999999998754311 111211 2233445567
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC
Q 046930 226 LEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG 305 (965)
Q Consensus 226 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 305 (965)
...|+.....+++.. +-|...|..-..+|...|++..|+.-++...+.... +...+..+-..+...|+.+.++...+.
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777777777654 446666666667777777777777666666554322 444555555666666666665544321
Q ss_pred ---CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCccc---
Q 046930 306 ---ILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVAN--- 379 (965)
Q Consensus 306 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 379 (965)
+.|+....... | +.+.+..+.++.| ......++|-+++.-.+...+.. |.
T Consensus 249 CLKldpdHK~Cf~~---Y---KklkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~e--p~~~~ 304 (504)
T KOG0624|consen 249 CLKLDPDHKLCFPF---Y---KKLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNE--PEETM 304 (504)
T ss_pred HHccCcchhhHHHH---H---HHHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcC--Ccccc
Confidence 12222111100 0 0111111111111 12345667777777777776654 33
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046930 380 --SVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKG 444 (965)
Q Consensus 380 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 444 (965)
...+..+..++...+++.+|++...++++..|.++.++..-+.+|.....++.|+.-|+.+.+.+
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 22455566777788999999999999999999999999999999999999999999999998763
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-08 Score=103.91 Aligned_cols=394 Identities=16% Similarity=0.154 Sum_probs=212.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--------CCCCHhhHHHHHH
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGA--------LKPNVVSYTSLVI 128 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~~l~~ 128 (965)
|...|+.+.|.+..+.+... .+|..++..+.+.++.|-|.-.+-.|....| -.++ ..-.....
T Consensus 738 yvtiG~MD~AfksI~~IkS~--------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKSD--------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEeccHHHHHHHHHHHhhh--------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 45668888887777655332 4688888888887777776655443321100 0121 11122223
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
.....|..++|..+|++-.+ |..|=..|...|.+++|.++-+.--+..
T Consensus 809 LAieLgMlEeA~~lYr~ckR-----------------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--- 856 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR-----------------------------YDLLNKLYQSQGMWSEAFEIAETKDRIH--- 856 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH-----------------------------HHHHHHHHHhcccHHHHHHHHhhcccee---
Confidence 34567888888888888765 3344555677788888877755432221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH----------HcCC---------CCCHhHHHHHHHHHHhcCCHhHHHHHHH
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVE----------DLGL---------VADEFVYATLIDGVCRRGDLDCAFRLLE 269 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 269 (965)
-..||.....-+...++.+.|++.|++.- ...+ ..|...|.-....+-..|+.+.|+.+|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 23556666666666777777777776532 1110 1122233333333344566666666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 046930 270 DMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCN 349 (965)
Q Consensus 270 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 349 (965)
...+ |.++++..+-+|+.++|.++-+.- .|..+...+.+.|-..|++.+|+..|-++.. +.
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fs 997 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEES-GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FS 997 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HH
Confidence 5432 445555556667777766665432 3444555667777777777777777665432 11
Q ss_pred HHHHHHH---------------hcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHH---------H
Q 046930 350 ILIKALF---------------MVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFD---------E 405 (965)
Q Consensus 350 ~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------~ 405 (965)
..|+.|- ...+.-.|-++|++..- -+..-+..|-+.|.+.+|+++-- -
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 2222111 11122233333333221 01122344666677766665321 1
Q ss_pred HHhc-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcc-cc-
Q 046930 406 LRRM-SI-SSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLR-SE- 481 (965)
Q Consensus 406 ~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~-~~- 481 (965)
+.+. ++ .++...+.-...++...++++|..++-...+. ...+.. +...++.-..++-+.|.-.. .+
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQL-CKNRNVRVTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHH-HhcCCCchhHHHHHhcCcCcCCCc
Confidence 2222 22 36777777777777778888887777655432 112222 22233332333333332111 11
Q ss_pred ---cchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchh
Q 046930 482 ---IYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWL 537 (965)
Q Consensus 482 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 537 (965)
....+...+++.+.++|.+..|-+-|.++-.. ...++++++.|+.+.
T Consensus 1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 12367888889999999999998888765331 234555666666544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-09 Score=97.64 Aligned_cols=319 Identities=14% Similarity=0.127 Sum_probs=185.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH-HHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY-TSLVIAL 130 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 130 (965)
..+..+.+..++.+|++++....+.+ |.+...++.++.+|....++..|...|++.-... |...-| ....+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~---p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS---PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQSL 88 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHH
Confidence 44444566677788888887777776 6666777788888888888888888888776532 333322 2445666
Q ss_pred HhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 131 CMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILL--DGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
.+.+.+..|+.+...|... ++...-..-+ .+....+++..+..+.++.... .
T Consensus 89 Y~A~i~ADALrV~~~~~D~-----------------------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n 142 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN-----------------------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---N 142 (459)
T ss_pred HHhcccHHHHHHHHHhcCC-----------------------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---C
Confidence 7777777777777666431 2211111111 2233466777777776666532 2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-----------
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIK----------- 277 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~----------- 277 (965)
+..+.+.......+.|+++.|.+-|+...+.+.-.....|+..+ ++.+.|+++.|+++..+++++|+.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 45556666666677777777777777777655444455666554 344567777777777777776542
Q ss_pred --CCH---------------HHHHHHHHHHHhcCCcchHHHHHcCCCC------CHHHHHHHHHHhhhcCChhHHHHHHH
Q 046930 278 --PSI---------------VTYNTIINGLCKVGRTSDAEEVSKGILG------DVVTYSTLLHGYIEEDNVNGILETKQ 334 (965)
Q Consensus 278 --~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (965)
||. ..+|.-...+.+.|+++.|.+.+..+|| |+.|...+.-.- ..+++....+-+.
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLq 300 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQ 300 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHH
Confidence 111 1122223344567788888877777765 455555443322 2233444444445
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCc-ccHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 046930 335 RLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLV-ANSVTYSTMIDGYCK-LGRIEEALEIFDEL 406 (965)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~ 406 (965)
.++..++ ....|+..++-.||+..-++.|-.++.+-...... .+...| .|+.+++. .-..++|.+-++.+
T Consensus 301 FLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 301 FLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555543 44567777777788888888887777654332211 112222 33344333 33455555544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.9e-08 Score=101.41 Aligned_cols=238 Identities=16% Similarity=0.141 Sum_probs=143.2
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CC
Q 046930 174 DTVSYTILLD--GFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG---------LV 242 (965)
Q Consensus 174 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~ 242 (965)
|..+-..+++ .|...|+.+.|.+..+-+. +...|..+.+.+.+..+++-|.-.+..|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3445555553 3567899999988877665 56789999999999988888877766554221 01
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC--CCCHHHHHHHHHHh
Q 046930 243 ADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI--LGDVVTYSTLLHGY 320 (965)
Q Consensus 243 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~l~~~~ 320 (965)
++ .+-..........|.+++|+.+|++.... ..|=..|...|.+++|.++-+.- ..-..||.....-+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 11 11122222335679999999999988753 23444667789999999886533 12345666667777
Q ss_pred hhcCChhHHHHHHHHHHH----------cCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHH
Q 046930 321 IEEDNVNGILETKQRLEE----------AGI---------QMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSV 381 (965)
Q Consensus 321 ~~~~~~~~a~~~~~~~~~----------~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 381 (965)
-..++.+.|++.|++... ..+ ..|...|.--..-+-..|+.+.|+.+|..+.+
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 778888888888875421 110 11222222222222335555555555554433
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 382 TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELN 441 (965)
Q Consensus 382 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (965)
|..+++..|-.|+.++|-++-++ ..|..+-..+++.|-..|++.+|..+|.++.
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44555555566666666655443 2344555566666666677777766666653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-08 Score=102.71 Aligned_cols=284 Identities=13% Similarity=0.094 Sum_probs=168.8
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC---
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG--- 98 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 98 (965)
...|+++.|+..+..... -+.....+....+..+.+.|++++|..+|..+++.+ |.+..-|..+..+..-..
T Consensus 15 ~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhcccc
Confidence 678999999999877443 234456677888899999999999999999999999 788888888888774443
Q ss_pred --ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh-HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCH
Q 046930 99 --KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN-EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT 175 (965)
Q Consensus 99 --~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 175 (965)
..+.-.++|++..... |...+...+.-.+.....+. .+...+..++..|+ +
T Consensus 90 ~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-----------------------P 143 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-----------------------P 143 (517)
T ss_pred cccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-----------------------c
Confidence 4566677888776643 33333322222222222333 23334444554443 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 176 VSYTILLDGFSKEGTIEKAVGILNKMIED----R----------LRPNL--ITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
.+++.|-..|....+..-..+++...... + -+|+. +++..+...|...|++++|+++.++.++.
T Consensus 144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33444444444444444444444443321 0 11222 34455566666777777777777777766
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCC-------C---
Q 046930 240 GLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILG-------D--- 309 (965)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~--- 309 (965)
. |..+..|..-...+-+.|++.+|.+.++.....+.. |...-+..+..+.+.|+.++|.+++..+.. |
T Consensus 224 t-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 224 T-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 3 223556666667777777777777777777766433 444445555566677777777766543311 1
Q ss_pred ---HHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 046930 310 ---VVTYSTLLHGYIEEDNVNGILETKQRLEE 338 (965)
Q Consensus 310 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (965)
.+-....+.+|.+.|++..|++.|..+.+
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11122345567777777777766665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-08 Score=93.68 Aligned_cols=323 Identities=15% Similarity=0.089 Sum_probs=213.6
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
|.+.+..+ .+..+|.+|++.+..-.... +.+......++.+|....++..|..+|++..... |.-..--.--+.
T Consensus 13 ftaviy~l-I~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRL-IRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHH-HHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHH
Confidence 44555555 55668999999887755433 3366678889999999999999999999998877 555555556677
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH--HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcC
Q 046930 93 GFCKIGKPELAIGFFENAISLGALKPNVVSYT--SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKG 170 (965)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (965)
.+.+.+.+.+|+.+...+.+ .++...-. .-..+....+++..+..+.++....
T Consensus 87 SLY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--------------------- 141 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--------------------- 141 (459)
T ss_pred HHHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---------------------
Confidence 88899999999999988764 23333222 2223455678888898888877542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------
Q 046930 171 IKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV-------- 242 (965)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------- 242 (965)
.+..+.+...-...+.|+++.|.+-|+.+.+-+.-....+|+..+ +..+.|+++.|++...++++.|+.
T Consensus 142 --n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIG 218 (459)
T KOG4340|consen 142 --NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIG 218 (459)
T ss_pred --CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCcc
Confidence 345555555555678999999999999999864443566777655 556779999999999999887642
Q ss_pred -----CCH---------------hHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcchH--
Q 046930 243 -----ADE---------------FVYATLIDGVCRRGDLDCAFRLLEDMEKK-GIKPSIVTYNTIINGLCKVGRTSDA-- 299 (965)
Q Consensus 243 -----~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~a-- 299 (965)
+|+ ..+|.-...+.+.|+++.|.+.+-+|.-+ ..+.|+.|...+.-.-.. +++.+.
T Consensus 219 m~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~ 297 (459)
T KOG4340|consen 219 MTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFE 297 (459)
T ss_pred ceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHH
Confidence 111 12333333456789999999999888643 234566666655443332 222222
Q ss_pred -HHHHcCC-CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHH-HhcCCHHHHHHHHHHc
Q 046930 300 -EEVSKGI-LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGI-QMDIVMCNILIKAL-FMVGALEDARALYQAM 371 (965)
Q Consensus 300 -~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 371 (965)
+..+-++ |-...|+..++-.|+++.-++-|-+++.+-..... -.+...|+ |+.++ ...-..++|.+-++.+
T Consensus 298 KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 298 KLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 2223333 44567899999999999999888877654221111 11233333 23333 2345566666655544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.8e-10 Score=112.99 Aligned_cols=226 Identities=15% Similarity=0.148 Sum_probs=177.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 046930 590 VNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQ 669 (965)
Q Consensus 590 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 669 (965)
+.....+++.|.+.+|.-.++.....-| .+..+|..|+.+....++-..|+..+++.++..+. |....-.|.-.|...
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhh
Confidence 3444456666666666666666555544 47999999999999999999999999999998544 888899999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHhhHHHHH-----------HHHHccCChHHHHHHHHHHHH-CCCCCChhhHHHHHHHHH
Q 046930 670 GCFVEAFRLFDSLERIDMVPSEVSYATLI-----------YNLCKEGQLLDAKKLFDRMVL-KGFKPSTRIYNSFIDGYC 737 (965)
Q Consensus 670 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 737 (965)
|.-.+|+..++.-++.. |. |..+. ..+.....+....++|-++.. .+..+|+.+...|+-.|-
T Consensus 367 g~q~~Al~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhHHHHHHHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 99999999999987643 11 00010 011122233445566655554 455578889999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHH
Q 046930 738 KFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEA 815 (965)
Q Consensus 738 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA 815 (965)
-.|++++|++.|+.++. ++| |...||.|+.++....+.++|+..|.++++ ++|...- .++|+..|...|.++||
T Consensus 442 ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred cchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHH
Confidence 99999999999999998 588 567999999999999999999999999966 9998765 78899999999999999
Q ss_pred HHHHHHHHhcC
Q 046930 816 RSILREMLQSK 826 (965)
Q Consensus 816 ~~~~~~~~~~~ 826 (965)
+++|-+++...
T Consensus 518 ~~hlL~AL~mq 528 (579)
T KOG1125|consen 518 VKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhh
Confidence 99999998743
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-08 Score=103.93 Aligned_cols=70 Identities=11% Similarity=0.048 Sum_probs=30.1
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSS-FTFCSLVYSFCSQGNMSRAVEVLELMSDEN 77 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (965)
|.....|..+...+ ...|+++.|...+....+......+. ......+..+...|++++|.+.++++++.+
T Consensus 3 p~~~~a~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 3 PDFALGHAAAALLL-LLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred CccHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34444444444333 34445555545455444433222221 112222333444555555555555555544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-09 Score=107.88 Aligned_cols=238 Identities=14% Similarity=0.126 Sum_probs=133.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRV 136 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (965)
+++.|++.+|.-.|+.+++.+ |.+.++|..||.....+++-..|+..++++++.+ |.|..+...|+-.|...|.-
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhH
Confidence 344455555555555555554 4455555555555555555555555555555444 34444444444445555555
Q ss_pred hHHHHHHHHHHHCCCcc--------chhhhh--hH------------HhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 046930 137 NEVNELFVRMESEGLKF--------DVVFYS--CW------------ICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKA 194 (965)
Q Consensus 137 ~~A~~~~~~~~~~~~~~--------~~~~~~--~~------------i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 194 (965)
.+|..++++-+...+.- +..... ++ ........+..+|+.++..|...|.-.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 55555444443322100 000000 00 000112333346777777777778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 195 VGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
..+|+.++...+. |...||.|...+....+.++|+..|.++++..+.- +.+...|.-+|...|.+++|.+.|-..+..
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 8888888876544 67778888888888888888888888888774222 334444555778888888888887766532
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCCcchHHH
Q 046930 275 ---------GIKPSIVTYNTIINGLCKVGRTSDAEE 301 (965)
Q Consensus 275 ---------g~~~~~~~~~~l~~~~~~~g~~~~a~~ 301 (965)
+..++...|..|=.++.-.++.+-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 111233456655555555555554443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-07 Score=101.97 Aligned_cols=304 Identities=11% Similarity=0.049 Sum_probs=204.0
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.....+..++..+...|+.+.+...+....+..+......+.....+..+...|++++|.+.+++++... |.+...+.
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~ 81 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALK 81 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHH
Confidence 3456677788888888999999999988887764323345566667778899999999999999999875 56665555
Q ss_pred HHHHHHHhc----CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 125 SLVIALCML----GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILN 199 (965)
Q Consensus 125 ~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 199 (965)
. ...+... +..+.+.+.+..... ..|+ ......+...+...|++++|.+.++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAP----------------------ENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCc----------------------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 3333333 444445444443111 1233 4455567778889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH--hHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046930 200 KMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV-ADE--FVYATLIDGVCRRGDLDCAFRLLEDMEKKGI 276 (965)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 276 (965)
+.++..+. +...+..+..++...|++++|...+++....... ++. ..|..+...+...|++++|..++++......
T Consensus 139 ~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 139 RALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99998644 6778888999999999999999999998876422 222 2455678889999999999999999865432
Q ss_pred -CCCHHHH-H--HHHHHHHhcCCcchHHHH---Hc---CC-CC--CHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC-
Q 046930 277 -KPSIVTY-N--TIINGLCKVGRTSDAEEV---SK---GI-LG--DVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQ- 342 (965)
Q Consensus 277 -~~~~~~~-~--~l~~~~~~~g~~~~a~~~---~~---~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 342 (965)
.+..... + .++..+...|....+.+. .. .. +. ..........++...|+.+.|...++.+......
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~ 297 (355)
T cd05804 218 ESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSA 297 (355)
T ss_pred CCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 1222211 1 233333444533333332 11 11 11 1122234666778899999999999888653322
Q ss_pred -------CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC
Q 046930 343 -------MDIVMCNILIKALFMVGALEDARALYQAMPEM 374 (965)
Q Consensus 343 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 374 (965)
..........-.+...|++++|.+.+......
T Consensus 298 ~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 298 DDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11223333444567899999999999888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-08 Score=98.52 Aligned_cols=215 Identities=14% Similarity=0.125 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQG-NMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
++..+-..+ ...++.+.|+..+.+++... |.+..+|.....++...| ++++++..++.+++.+ |.+..+|+..
T Consensus 39 a~~~~ra~l-~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R 112 (320)
T PLN02789 39 AMDYFRAVY-ASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHR 112 (320)
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHH
Confidence 333333443 67889999999999999866 345556777777777777 6899999999999999 8899999999
Q ss_pred HHHHHhcCCh--hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 91 VSGFCKIGKP--ELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 91 ~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
+-++.+.|+. ++++.+++++++.+ +.|..+|...+.++...|+++++++.++++++.++
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~----------------- 173 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV----------------- 173 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-----------------
Confidence 9888888874 78899999999987 78899999999999999999999999999998753
Q ss_pred cCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHH
Q 046930 169 KGIKPDTVSYTILLDGFSKE---GT----IEKAVGILNKMIEDRLRPNLITYTAIIFGFCKK----GKLEEAFTVFKKVE 237 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~ 237 (965)
.|..+|+....++.+. |. .++.++...+++...+. |..+|+-+..++... ++..+|...+.++.
T Consensus 174 ----~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 174 ----RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred ----CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 5677787777666554 22 24677778788887655 788888888887763 34567888888877
Q ss_pred HcCCCCCHhHHHHHHHHHHh
Q 046930 238 DLGLVADEFVYATLIDGVCR 257 (965)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~ 257 (965)
..+ +.+......|++.|+.
T Consensus 249 ~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 249 SKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccc-CCcHHHHHHHHHHHHh
Confidence 754 4566778888888875
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-05 Score=84.77 Aligned_cols=555 Identities=16% Similarity=0.112 Sum_probs=262.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHH
Q 046930 186 SKEGTIEKAVGILNKMIEDRLRPNLIT-YTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCA 264 (965)
Q Consensus 186 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 264 (965)
...+++.+|+.-..++.++. ||... -..-.-.+.+.|+.++|..+++.....+. .|..|...+-.+|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 45788999999999998873 34322 22223456789999999999988877663 4888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc----hHHHHHcCCCCCHHHHHHHHHHhhhcC-Ch---------hHHH
Q 046930 265 FRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTS----DAEEVSKGILGDVVTYSTLLHGYIEED-NV---------NGIL 330 (965)
Q Consensus 265 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~l~~~~~~~~-~~---------~~a~ 330 (965)
..+|++.... .|+......+..+|.+.+.+. .|.++++.+|.+...+-.+++.+.... .. .-|.
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999999876 567777777888888877654 466778888877777666666554321 11 1122
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH-HchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 046930 331 ETKQRLEEAGIQMD-IVMCNILIKALFMVGALEDARALYQ-AMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRR 408 (965)
Q Consensus 331 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (965)
+.++.+.+.+-+.. ..=.......+...|.+++|..++. ...+.-..-+...-+.-+..+...+++.+-.++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 23333332220000 0101111112233445555555542 222211111222233334444445555555555555444
Q ss_pred cCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHH
Q 046930 409 MSISSVACYNCIINGLCKSGMVDMATEVFIELNE-KGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIIC 487 (965)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 487 (965)
.++++ |...... +.++++ ...+|-...+ ...+..+...+...+........+--++
T Consensus 255 k~~Dd---y~~~~~s-------------v~klLe~~~~~~a~~~~-------s~~~~l~~~~ek~~~~i~~~~Rgp~LA~ 311 (932)
T KOG2053|consen 255 KGNDD---YKIYTDS-------------VFKLLELLNKEPAEAAH-------SLSKSLDECIEKAQKNIGSKSRGPYLAR 311 (932)
T ss_pred hCCcc---hHHHHHH-------------HHHHHHhcccccchhhh-------hhhhhHHHHHHHHHHhhcccccCcHHHH
Confidence 44433 1111110 001110 0000000000 0001111222222222222111111222
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhh
Q 046930 488 NDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLN 567 (965)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (965)
-.+...+..-|+.++....|-+-...- | -+..-+..+...=...+...++...+...+..... .+....+.+.-
T Consensus 312 lel~kr~~~~gd~ee~~~~y~~kfg~k--p---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~-~k~l~~h~c~l 385 (932)
T KOG2053|consen 312 LELDKRYKLIGDSEEMLSYYFKKFGDK--P---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGD-EKVLQQHLCVL 385 (932)
T ss_pred HHHHHHhcccCChHHHHHHHHHHhCCC--c---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhh-HHHHHHHHHHH
Confidence 222233345577776665553322111 0 11111111111111222233333333333322210 01111111111
Q ss_pred cHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCC----ch---hhHHHHHHHHHhcCCH---
Q 046930 568 DVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCM----DV---VDYSTIVAALCREGYV--- 637 (965)
Q Consensus 568 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~---~~~~~l~~~~~~~g~~--- 637 (965)
.....+-.|..+...+. ......+......| .++ -++-.|.. +. -+-+.|++.+-+.++.
T Consensus 386 ~~~rl~G~~~~l~ad~i--~a~~~kl~~~ye~g-----ls~---~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l 455 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSI--LAYVRKLKLTYEKG-----LSL---SKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDL 455 (932)
T ss_pred HHHHHhhccccCChHHH--HHHHHHHHHHHhcc-----ccc---cccccccccccHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 11111111111111000 00000000000000 000 00001111 11 2236677777777664
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHH
Q 046930 638 NKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRM 717 (965)
Q Consensus 638 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (965)
-+|+-+++...... +.|..+--.+++.|.-.|-+..|.++|+.+--..+..|..-|. +...+...|++..+...++..
T Consensus 456 ~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 456 FEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHH
Confidence 45677777766653 2355566677888888899999999988875555555543333 234466778888888888887
Q ss_pred HHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH---HHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046930 718 VLKGFKPS-TRIYNSFIDGYCKFGQLEEAFKF---LHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFN 788 (965)
Q Consensus 718 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (965)
.+- +..+ ..+-...+.+ .+.|.+.+..++ =+++.......-..+-+..+...+..++.++-...++.|.
T Consensus 534 lkf-y~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 534 LKF-YDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHH-HhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 763 1111 1222223333 345555544433 3344332111122334556666677888888888888875
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-07 Score=94.79 Aligned_cols=212 Identities=13% Similarity=0.070 Sum_probs=168.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG-KPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
.+-.++...++.++|+..++++++.+ |.+..+|+..+.++...| ++++++..+++++..+ |.+..+|+....++
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l 116 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHH
Confidence 33344555678999999999999999 899999999999999998 6899999999999877 77888999888777
Q ss_pred HhcCCh--hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 131 CMLGRV--NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 131 ~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
.+.|+. +++..+++++++.+ +.|..+|+....++...|+++++++.++++++.++.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d---------------------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~- 174 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD---------------------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR- 174 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC---------------------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-
Confidence 777763 67888999998864 367899999999999999999999999999998776
Q ss_pred CHHHHHHHHHHHHhc---CCh----HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC
Q 046930 209 NLITYTAIIFGFCKK---GKL----EEAFTVFKKVEDLGLVADEFVYATLIDGVCR----RGDLDCAFRLLEDMEKKGIK 277 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 277 (965)
|..+|+....++.+. |.. ++.+.....++... +.|...|+.+...+.. .+...+|.+.+.+....++.
T Consensus 175 N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 175 NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 788888777666554 222 46777777777775 5678888888877766 24456688888887765433
Q ss_pred CCHHHHHHHHHHHHh
Q 046930 278 PSIVTYNTIINGLCK 292 (965)
Q Consensus 278 ~~~~~~~~l~~~~~~ 292 (965)
+......|+..|..
T Consensus 254 -s~~al~~l~d~~~~ 267 (320)
T PLN02789 254 -HVFALSDLLDLLCE 267 (320)
T ss_pred -cHHHHHHHHHHHHh
Confidence 56677778887764
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.9e-05 Score=80.57 Aligned_cols=227 Identities=15% Similarity=0.135 Sum_probs=157.5
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
...+++..|++.....++.+|-.+-..++..+. +.+.|+.++|..+++...... +.+..++..+-.+|...|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~---~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLK---GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCC---CCchHHHHHHHHHHHHHhhhh
Confidence 467899999999999999886555555555554 789999999999998876666 568889999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL 181 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 181 (965)
+|..+|+++.... |+-.....+..+|.+-+.+.+-.+.--++-+.- +.++..+-.+
T Consensus 95 ~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~---------------------pk~~yyfWsV 150 (932)
T KOG2053|consen 95 EAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKNF---------------------PKRAYYFWSV 150 (932)
T ss_pred HHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------------CcccchHHHH
Confidence 9999999999864 567777778888888887775554443433321 1223333334
Q ss_pred HHHHHhc-CC---------HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHHcCCCCCHhHHH
Q 046930 182 LDGFSKE-GT---------IEKAVGILNKMIEDR-LRPNLITYTAIIFGFCKKGKLEEAFTVF-KKVEDLGLVADEFVYA 249 (965)
Q Consensus 182 ~~~~~~~-g~---------~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~ 249 (965)
++.+.+. .. ..-|.+.++.+++.+ .--+..-...-...+...|++++|++++ ....+.-...+...-+
T Consensus 151 ~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~ 230 (932)
T KOG2053|consen 151 ISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLEN 230 (932)
T ss_pred HHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHH
Confidence 4333321 11 223555666666553 2223333333445667789999999999 4444443344555555
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046930 250 TLIDGVCRRGDLDCAFRLLEDMEKKGIK 277 (965)
Q Consensus 250 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 277 (965)
.-+..+...+++.+..++..++...|..
T Consensus 231 ~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 231 KKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 6678888899999999999999888654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=76.11 Aligned_cols=49 Identities=35% Similarity=0.802 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFC 221 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (965)
||+.+||.++.+|++.|++++|.++|++|.+.|++||..||+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777777777777777777776664
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.9e-08 Score=95.89 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 180 ILLDGFSKEGTIEKAVGILNKMIEDRLR-P-NLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 180 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
.+...+.+.|++++|...|..++...+. | ....+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666788999999999999999876432 2 3577888999999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=74.97 Aligned_cols=49 Identities=39% Similarity=0.803 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 046930 654 VNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLC 702 (965)
Q Consensus 654 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 702 (965)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-07 Score=86.14 Aligned_cols=157 Identities=16% Similarity=0.123 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
..+...+...|+-+.+..+.......+ |.+.......+....+.|++..|+..|.++.... |+|..+|+.++.+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHHHHH
Confidence 444444444455555554444443333 4444444445555555555555555555555443 44455555555555
Q ss_pred HhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 046930 131 CMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNL 210 (965)
Q Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 210 (965)
.+.|++++|..-|.++.+..+ -++...+.|.-.+.-.|+++.|..++......+.. |.
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~---------------------~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~ 202 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAP---------------------NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DS 202 (257)
T ss_pred HHccChhHHHHHHHHHHHhcc---------------------CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-ch
Confidence 555555555555555544311 22333444444444455555555555544443222 33
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 046930 211 ITYTAIIFGFCKKGKLEEAFTVFK 234 (965)
Q Consensus 211 ~~~~~l~~~~~~~g~~~~A~~~~~ 234 (965)
..-..+..+....|++++|..+-.
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhcc
Confidence 344444444445555555544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.7e-08 Score=94.82 Aligned_cols=188 Identities=14% Similarity=0.064 Sum_probs=140.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh---
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV--- 121 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--- 121 (965)
.....+..++..+...|++++|...|+.++..++..|....++..++.++...|++++|+..|+++++.. |.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 3566788889999999999999999999999884323344688999999999999999999999999876 33333
Q ss_pred hHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC-HHHHHHHHHHHHhcCCHH
Q 046930 122 SYTSLVIALCML--------GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIE 192 (965)
Q Consensus 122 ~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 192 (965)
++..++.++... |++++|.+.|+++.... |+ ...+..+..... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------p~~~~~~~a~~~~~~----~~ 162 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY----------------------PNSEYAPDAKKRMDY----LR 162 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC----------------------CCChhHHHHHHHHHH----HH
Confidence 577777777765 78999999999998753 33 223322221111 00
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHhHHHHHHHH
Q 046930 193 KAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGL--VADEFVYATLIDGVCRRGDLDCAFRLLED 270 (965)
Q Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 270 (965)
. ... .....+...+.+.|++.+|+..++.+.+... +.....+..+..++.+.|++++|..+++.
T Consensus 163 ~------~~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 163 N------RLA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred H------HHH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 000 1122566778999999999999999987742 22356888999999999999999999999
Q ss_pred HHHC
Q 046930 271 MEKK 274 (965)
Q Consensus 271 ~~~~ 274 (965)
+...
T Consensus 229 l~~~ 232 (235)
T TIGR03302 229 LGAN 232 (235)
T ss_pred HHhh
Confidence 8765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.5e-08 Score=96.69 Aligned_cols=250 Identities=11% Similarity=0.081 Sum_probs=167.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhH
Q 046930 184 GFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDC 263 (965)
Q Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 263 (965)
-+.-.|++..++.-.+ ...............+.+++...|+++.++. ++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3555899998887666 3332222234445567788999998876543 333333 5555555555444433345555
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC
Q 046930 264 AFRLLEDMEKKGIKP-SIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQ 342 (965)
Q Consensus 264 A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 342 (965)
+..-+++.......+ +..........+...|++++|++++... .+.......+..+++.++++.|.+.++.|.+.+
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-- 161 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQID-- 161 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 555555544333332 2333334445667789999999998876 677888888899999999999999999998653
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 046930 343 MDIVMCNILIKALFM----VGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYN 418 (965)
Q Consensus 343 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (965)
.| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.+....++.++.++.
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 34 344445554433 33689999999998765 4678888999999999999999999999999988888999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHC
Q 046930 419 CIINGLCKSGMV-DMATEVFIELNEK 443 (965)
Q Consensus 419 ~l~~~~~~~g~~-~~A~~~~~~~~~~ 443 (965)
.++.+....|+. +.+.+.+.++...
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999988888887 6677787777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.00016 Score=74.15 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHccCChHHHHHHHH
Q 046930 637 VNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVP-SEVSYATLIYNLCKEGQLLDAKKLFD 715 (965)
Q Consensus 637 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 715 (965)
.+...++++++...-...-..+|..+++.-.+..-+..|..+|.++.+.+..+ +..+.++++.-|+ +++..-|..+|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55556666666654322233467778888778888888999999998876666 5677777877554 677788899998
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 716 RMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDK--FTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 716 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
-=++. +..++......++-+...|+-..|..+|++.+..++.|+. .+|..++.-=..-|+.+-++++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77665 3445555567777888888888899999998887666653 5788888766778888888888777643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=84.63 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=95.1
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 046930 32 LVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 111 (965)
..|++++... |+ .+..++.++...|++++|...|+.++..+ |.+..++..++.++...|++++|+..|++++
T Consensus 14 ~~~~~al~~~---p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLSVD---PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHcC---HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567766533 33 35567888999999999999999999998 8899999999999999999999999999999
Q ss_pred HcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 112 SLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
..+ |.++..+..++.++...|++++|+..|+++++..
T Consensus 86 ~l~--p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 86 MLD--ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred hcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 976 7788899999999999999999999999998864
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-05 Score=96.14 Aligned_cols=204 Identities=15% Similarity=0.086 Sum_probs=128.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCc--c-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCCC--H
Q 046930 623 DYSTIVAALCREGYVNKALDLCAFAKNK----GIT--V-NIVTYNTVIHSLCRQGCFVEAFRLFDSLERI--DMVPS--E 691 (965)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~--~ 691 (965)
++..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+. .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 3455566777788888888877766542 111 1 1233455666677778999988888877652 11121 3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCChhhH-----HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh---h
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLKG-FKPSTRIY-----NSFIDGYCKFGQLEEAFKFLHDLKINCLEPDK---F 762 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~ 762 (965)
..+..+..++...|++++|.+.+..+.... .......+ ......+...|+.+.|...+............ .
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 344455667778899999988888875420 01111111 11223445578888888887776542111111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 763 TVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPDF-LGFLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
.+..++.++...|++++|...++++.+. +..++. .++..++.++.+.|+.++|...+.++++..
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2445677788889999999999887652 333332 336678888889999999999999998743
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-05 Score=97.02 Aligned_cols=376 Identities=15% Similarity=0.069 Sum_probs=226.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
....+..+...|++.+|...+..+... +.-.......+......|+++.+..+++.+.... ...++.........
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~----~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~ 418 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA----QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH----HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHH
Confidence 344455566677777776655443211 1222334445556667788888777776642111 12233333445556
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD--TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR 207 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (965)
+...|++++|...+..+...-...+ .+..+. ......+...+...|++++|...+++.......
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~--------------~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~ 484 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRN--------------IELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL 484 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccC--------------cccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 6778999999999988765311000 000111 122223445567899999999999998874222
Q ss_pred CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--CHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC----
Q 046930 208 PNL----ITYTAIIFGFCKKGKLEEAFTVFKKVEDLGL---VA--DEFVYATLIDGVCRRGDLDCAFRLLEDMEKK---- 274 (965)
Q Consensus 208 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 274 (965)
.+. .+.+.+...+...|++++|...+.+.....- .+ ...++..+...+...|+++.|...+++....
T Consensus 485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 222 3445666778889999999999988874311 11 1234555667788899999999998887652
Q ss_pred CCC--C-CHHHHHHHHHHHHhcCCcchHHHHHcCC-------CC--CHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC
Q 046930 275 GIK--P-SIVTYNTIINGLCKVGRTSDAEEVSKGI-------LG--DVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQ 342 (965)
Q Consensus 275 g~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 342 (965)
+.. + ....+..+...+...|++++|...+... .+ ....+..+...+...|+++.|...+..+......
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 211 1 1233445566777789999987775432 11 1233444566777888998888888777543111
Q ss_pred C-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHchhCCCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 046930 343 M-DIVMC-----NILIKALFMVGALEDARALYQAMPEMNLVANS---VTYSTMIDGYCKLGRIEEALEIFDELRRM---- 409 (965)
Q Consensus 343 ~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 409 (965)
. ....+ ...+..+...|+.+.|..++............ .....+..++...|++++|...++++...
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1 10101 11123344578888888887766542211111 12345667778888888888888887654
Q ss_pred CC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046930 410 SI--SSVACYNCIINGLCKSGMVDMATEVFIELNEKG 444 (965)
Q Consensus 410 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 444 (965)
+. ....+...++.++...|+.++|...+.+.++..
T Consensus 725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11 123456677777888888888888888887653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-07 Score=92.35 Aligned_cols=246 Identities=15% Similarity=0.112 Sum_probs=155.5
Q ss_pred HHHhhhcHHHHHHHHHhhhhcCcc--ccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHH
Q 046930 562 QYLCLNDVTNALLFIKNMKEISST--VTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNK 639 (965)
Q Consensus 562 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 639 (965)
.++-.|++..++.-.+ ....++. ...-.-+.+.++..|+...++.-+.. ..+ +...+...+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~-~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSS-PELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSS-CCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCC-hhHHHHHHHHHHHhCccchHH
Confidence 4556677777776555 2222222 22224456688888887654433322 222 235555555544444345566
Q ss_pred HHHHHHHHHhcCCcc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 046930 640 ALDLCAFAKNKGITV-NIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMV 718 (965)
Q Consensus 640 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (965)
++.-+++.......+ +..........+...|++++|++++... .+.......+.+|.+.+|++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666655544333222 3333333446677889999999988653 345666778888999999999999999998
Q ss_pred HCCCCCChhhHHHHHHHHHh--cC--CHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 046930 719 LKGFKPSTRIYNSFIDGYCK--FG--QLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP 794 (965)
Q Consensus 719 ~~~~~~~~~~~~~l~~~~~~--~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 794 (965)
+. ..|. +...++.++.. .| ++.+|..+|+++... +.+++.+.+.++.++...|++++|.+.+++..+ ..|
T Consensus 159 ~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~ 232 (290)
T PF04733_consen 159 QI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDP 232 (290)
T ss_dssp CC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-C
T ss_pred hc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hcc
Confidence 74 3343 33444444332 33 689999999998765 567788899999999999999999999999854 566
Q ss_pred Ch-HHHHHHHHHHhcCCCH-HHHHHHHHHHHh
Q 046930 795 DF-LGFLYLVKGLCTKGRM-EEARSILREMLQ 824 (965)
Q Consensus 795 ~~-~~~~~l~~~~~~~g~~-~eA~~~~~~~~~ 824 (965)
+. .++.+++.+....|+. +.+.+++.++.+
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 54 4577888888889988 556677777766
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.4e-07 Score=83.17 Aligned_cols=180 Identities=14% Similarity=0.078 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 046930 65 RAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFV 144 (965)
Q Consensus 65 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 144 (965)
.+...+-.....+ |.+..+ ......+.-.|+-+.+.....+..... +.+.......+....+.|++.+|+..++
T Consensus 51 ~a~~al~~~~~~~---p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~r 124 (257)
T COG5010 51 GAAAALGAAVLRN---PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLR 124 (257)
T ss_pred HHHHHHHHHHhcC---cchHHH-HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3444444444555 677777 778888888888888888888866543 5666677778888888999999999999
Q ss_pred HHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046930 145 RMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKG 224 (965)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 224 (965)
++.... ++|..+|+.+..+|.+.|+++.|...|.+.++..+. ++...+.+...+.-.|
T Consensus 125 kA~~l~---------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~g 182 (257)
T COG5010 125 KAARLA---------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRG 182 (257)
T ss_pred HHhccC---------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcC
Confidence 887654 478889999999999999999999999998886444 6677888888888889
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046930 225 KLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEK 273 (965)
Q Consensus 225 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 273 (965)
+++.|..++......+ ..|..+-..+.......|+++.|..+...-..
T Consensus 183 d~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 183 DLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred CHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 9999999988888765 44666777777778888899888887665443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-06 Score=97.71 Aligned_cols=206 Identities=10% Similarity=0.036 Sum_probs=148.4
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+.+....+..+....-|.-++|-+.+..-++ .++.....-.....++.-........ |.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 88 (694)
T PRK15179 24 PASGPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRRY---PHTELF 88 (694)
T ss_pred CCCCcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHhc---cccHHH
Confidence 556666666666655666666666443332121 11222222233334444444444444 778899
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
+..++.+....|++++|+.+++.++... |.+..++..++.++.+.+++++|...+++++...+
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p--------------- 151 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS--------------- 151 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC---------------
Confidence 9999999999999999999999999876 66677888999999999999999999999987642
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 046930 167 VDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEF 246 (965)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 246 (965)
.+....+.+..++.+.|++++|..+|+++...++. +..++..+..++...|+.++|...|++..+.. .+-..
T Consensus 152 ------~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~ 223 (694)
T PRK15179 152 ------SSAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGAR 223 (694)
T ss_pred ------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchH
Confidence 45677778888888999999999999999985433 57888888899999999999999999988764 33445
Q ss_pred HHHHHH
Q 046930 247 VYATLI 252 (965)
Q Consensus 247 ~~~~l~ 252 (965)
.|+.++
T Consensus 224 ~~~~~~ 229 (694)
T PRK15179 224 KLTRRL 229 (694)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-07 Score=85.60 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=96.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH-HhcCC--h
Q 046930 60 QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL-CMLGR--V 136 (965)
Q Consensus 60 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~ 136 (965)
.++.++++..++..++.+ |.+...|..++..|...|++++|+..|++++... |.+...+..++.++ ...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCc
Confidence 567788888888888888 7888888888888888888888888888888876 66777888888764 56666 4
Q ss_pred hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 137 NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
++|.++++++++.++ .+..++..+...+.+.|++++|...|+++++..+
T Consensus 127 ~~A~~~l~~al~~dP---------------------~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 127 PQTREMIDKALALDA---------------------NEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHHhCC---------------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888887642 4577778888888888888888888888887643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.3e-08 Score=85.10 Aligned_cols=111 Identities=12% Similarity=-0.045 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
.+..++..+ .+.|++++|+..|+.++... |.+..++..++.++...|++++|+..|+.++..+ |.++.++..++
T Consensus 26 ~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~---p~~~~a~~~lg 99 (144)
T PRK15359 26 TVYASGYAS-WQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD---ASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHH
Confidence 456667766 89999999999999999866 5688899999999999999999999999999998 89999999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 92 SGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
.++...|++++|+..|++++... |.++..+.....+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~~~~~~~~ 136 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS--YADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHH
Confidence 99999999999999999999976 66666666655544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.1e-05 Score=85.37 Aligned_cols=154 Identities=11% Similarity=0.088 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046930 174 DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLID 253 (965)
Q Consensus 174 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 253 (965)
+..++..++.+|-+.|+.++|..+|+++++..+. |+.+.|.+...|... ++++|++++.++...
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 4457778888899999999999999999998744 888899999999888 999999998887754
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHH
Q 046930 254 GVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETK 333 (965)
Q Consensus 254 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 333 (965)
+...+++..+..++.++....+. +...+..+.+.....-.... -..++.-+...|-..+++++++.++
T Consensus 179 -~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~~~----------~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 179 -FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREFTR----------LVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred -HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhccch----------hHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 55667888888888888887333 33333333333322211222 2334445666777778888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHH
Q 046930 334 QRLEEAGIQMDIVMCNILIKALF 356 (965)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~ 356 (965)
+.+++... .+.....-++..|.
T Consensus 247 K~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCC-cchhhHHHHHHHHH
Confidence 88877653 24445555555554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-07 Score=87.71 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=108.0
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH-HhcCC--h
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF-CKIGK--P 100 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~ 100 (965)
.++.++++..++.+++.. |.+...|..++.+|...|++++|+..|+++.+.+ |.++.++..++.++ ...|+ +
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---GENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCCCc
Confidence 355577888889888866 6788899999999999999999999999999999 89999999999974 77787 5
Q ss_pred hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 101 ELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
++|.+.++++++.+ |.++.++..++..+...|++++|+..|+++++..
T Consensus 127 ~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 127 PQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999987 7788899999999999999999999999998864
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-07 Score=95.62 Aligned_cols=213 Identities=17% Similarity=0.068 Sum_probs=115.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc
Q 046930 625 STIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKE 704 (965)
Q Consensus 625 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 704 (965)
..+...+.+.|-..+|+.+|+++. .|...+.+|+..|+..+|..+..+-++ -+||+..|..+++.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 455556666666666666665432 344555666666666666666655555 245566666666665555
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 046930 705 GQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGF 783 (965)
Q Consensus 705 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 783 (965)
.-+++|.++.+..... .-..++......+++.++.+.++...+ +.| -..+|-.++.+..+.++++.|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 5555666555543321 112222233335566666666666555 244 344565555555666666666666
Q ss_pred HHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHH
Q 046930 784 FLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIA 862 (965)
Q Consensus 784 ~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 862 (965)
|..... +.|+... |+++..+|.+.|+..+|...+.++++... . ....+-+......+.|.+++|++
T Consensus 542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~---------~--~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY---------Q--HWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC---------C--CCeeeechhhhhhhcccHHHHHH
Confidence 666643 5565554 66666666666666666666666665321 0 11122233333345566666666
Q ss_pred HHHHHhhc
Q 046930 863 ILDEIGYM 870 (965)
Q Consensus 863 ~~~~~~~~ 870 (965)
.|.++...
T Consensus 609 A~~rll~~ 616 (777)
T KOG1128|consen 609 AYHRLLDL 616 (777)
T ss_pred HHHHHHHh
Confidence 66655433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-06 Score=96.67 Aligned_cols=163 Identities=13% Similarity=0.089 Sum_probs=137.7
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHH
Q 046930 26 DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIG 105 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 105 (965)
.+.+++.......+ .++.++.++..|+++..+.|.+++|+.+++.+++.. |.+..+...++.++.+.+++++|+.
T Consensus 67 ~~~~~~~~~~~~~~--~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 67 KPAAALPELLDYVR--RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred chHhhHHHHHHHHH--hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHH
Confidence 34445555555444 346678999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHH
Q 046930 106 FFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGF 185 (965)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 185 (965)
.++++++.. |.+......++.++.+.|++++|..+|+++...+ +.+..++..+...+
T Consensus 142 ~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~---------------------p~~~~~~~~~a~~l 198 (694)
T PRK15179 142 EIELYFSGG--SSSAREILLEAKSWDEIGQSEQADACFERLSRQH---------------------PEFENGYVGWAQSL 198 (694)
T ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC---------------------CCcHHHHHHHHHHH
Confidence 999999977 7777888999999999999999999999999743 23478899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 186 SKEGTIEKAVGILNKMIEDRLRPNLITYTAII 217 (965)
Q Consensus 186 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 217 (965)
...|+.++|...|+++++.. .|....|+..+
T Consensus 199 ~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 199 TRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 99999999999999999863 33445555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.3e-06 Score=94.36 Aligned_cols=134 Identities=12% Similarity=0.114 Sum_probs=98.2
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-------
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVK------- 79 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------- 79 (965)
|.+...|..|+..| ...+++++|.+..+..++..+-.+. .|..++-.+.+.+++.++..+ .+.+.-..
T Consensus 28 p~n~~a~~~Li~~~-~~~~~~deai~i~~~~l~~~P~~i~--~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 28 LSKFKELDDLIDAY-KSENLTDEAKDICEEHLKEHKKSIS--ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cchHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCccee--hHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 56677899999987 7899999999999988876643333 344444467777777666665 44333210
Q ss_pred ---------CCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 80 ---------YPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 80 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
++.+..++..++.+|-+.|+.++|...|+++++.+ |.|+.+.+.++..|... +.++|++++.+++.
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 02333788888888888888888888888888877 77788888888888888 88888888887765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-05 Score=73.78 Aligned_cols=184 Identities=19% Similarity=0.144 Sum_probs=143.5
Q ss_pred cCCHHHHHHHHHHHHhc---C-CcccHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccC
Q 046930 634 EGYVNKALDLCAFAKNK---G-ITVNIV-TYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS---EVSYATLIYNLCKEG 705 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 705 (965)
..+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++...- |. ..-+.++ .+...|
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam--~lEa~~ 100 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAM--LLEATG 100 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHH--HHHHhh
Confidence 35778888888877642 3 444554 45556667778899999999999987643 33 2223333 366789
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 706 QLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFL 785 (965)
Q Consensus 706 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 785 (965)
++++|+++|+.+++.+ +.|.+++-.-+.+.-..|+.-+|++.+...++. +.-|...|.-+...|...|++++|.-+++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 9999999999999874 556777777777788889988999999998885 66689999999999999999999999999
Q ss_pred HhHhCCCCCChHH-HHHHHHHHhcCC---CHHHHHHHHHHHHhc
Q 046930 786 DFNTKGVSPDFLG-FLYLVKGLCTKG---RMEEARSILREMLQS 825 (965)
Q Consensus 786 ~~~~~~~~p~~~~-~~~l~~~~~~~g---~~~eA~~~~~~~~~~ 825 (965)
+++= ++|-... +..++..++-.| +++-|.++|.++++.
T Consensus 179 E~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9964 7887666 667888887655 577899999999983
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.2e-07 Score=78.85 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046930 33 VLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 112 (965)
.|+.++... +.+......++..+...|++++|...|+.+...+ |.++.++..++.++...|++++|...|++++.
T Consensus 5 ~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666544 3355667788888899999999999999998887 78889999999999999999999999999988
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 113 LGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.+ |.+...+..++.++...|++++|...|+++++..
T Consensus 80 ~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 80 LD--PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred cC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 66 6677888888999999999999999999988753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-05 Score=71.35 Aligned_cols=250 Identities=14% Similarity=0.126 Sum_probs=162.8
Q ss_pred HHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHH
Q 046930 560 LVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNK 639 (965)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 639 (965)
+..+.-.|++..++............+..-.-+.+.|+..|.......-+.... .+...+...+...+...++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~----~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK----ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc----CChHHHHHHHHHHhhCcchhHH
Confidence 344556677777777766655443333333445567777776544332222111 1224444445555555555555
Q ss_pred HHHHH-HHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 046930 640 ALDLC-AFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMV 718 (965)
Q Consensus 640 A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (965)
-+.-+ +.+.......+......-+..|+..+++++|+........ ......+ +..+.+..+.+-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----lE~~Al~--VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----LEAAALN--VQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----HHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 44443 4444443333333334445678999999999999876322 2223333 344668889999999999999
Q ss_pred HCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 046930 719 LKGFKPSTRIYNSFIDGYCK----FGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP 794 (965)
Q Consensus 719 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 794 (965)
+- .+..+.+.|+.++.+ .+++.+|.-+|++|-++ ..|+..+.+-.+.++...|++++|..+++.+++.. ..
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 73 255677777777655 35799999999999875 68899999999999999999999999999997643 33
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHH-HHHHHHh
Q 046930 795 DFLGFLYLVKGLCTKGRMEEARS-ILREMLQ 824 (965)
Q Consensus 795 ~~~~~~~l~~~~~~~g~~~eA~~-~~~~~~~ 824 (965)
+..++.+++..-...|...++.. .+.+...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 56678888888888888877765 4444444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-06 Score=89.98 Aligned_cols=211 Identities=13% Similarity=0.083 Sum_probs=158.6
Q ss_pred HHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHH
Q 046930 594 KKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFV 673 (965)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 673 (965)
..+...|-...|..+++. ...|...+..|...|+.++|..+..+.+++ +|+...|..+++......-++
T Consensus 406 ell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence 344455555555555543 667888888999999999999888888774 678888888888888877888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 046930 674 EAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLK 753 (965)
Q Consensus 674 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 753 (965)
+|.++.+..... .-..+.....+.++++++.+.++.-.+.. +.-..+|..++.+..++++++.|...|....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 888888765432 22222222345789999999999887752 4467788999999999999999999999988
Q ss_pred hCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046930 754 INCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 754 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
. ..|| ...||++..+|.+.|+-.+|...+.++++.+..|-. .+-+-.-...+.|.+++|.+.+.+++..+
T Consensus 547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-IWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-eeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 7 4886 468999999999999999999999998776544332 24444455678899999999999888743
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-06 Score=84.52 Aligned_cols=152 Identities=15% Similarity=0.150 Sum_probs=130.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
-........+..+...|++++|+..++..+... |.|+..+...+..+.+.++..+|.+.|++++... |.....+.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~---P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~ 378 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ---PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQL 378 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHH
Confidence 344566677777889999999999999998887 8999999999999999999999999999999976 55577888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.++.+|.+.|++.+|+..++...... +.|+..|..|..+|...|+..++.....++..
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~---------------------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~- 436 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFND---------------------PEDPNGWDLLAQAYAELGNRAEALLARAEGYA- 436 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcC---------------------CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH-
Confidence 99999999999999999999988753 46799999999999999999999998888743
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 205 RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
..|+++.|...+....+..
T Consensus 437 -----------------~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 437 -----------------LAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -----------------hCCCHHHHHHHHHHHHHhc
Confidence 3578888888887777653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-06 Score=76.38 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=93.8
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 68 EVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 147 (965)
..|+.++..+ |.+......++..+...|++++|.+.|+++...+ |.+...+..++.++...|++++|...++++.
T Consensus 4 ~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLD---SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCC---hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777 6777888899999999999999999999998876 6678888899999999999999999999887
Q ss_pred HCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 148 SEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
+.+ +.+...+..+...+...|++++|...|+...+..
T Consensus 79 ~~~---------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 79 ALD---------------------PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred hcC---------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 753 2467777888888899999999999999888863
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.7e-06 Score=83.03 Aligned_cols=181 Identities=14% Similarity=0.053 Sum_probs=141.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
+...+...+........-..+-..+....+ |....+++..+..+...|++++|+..++.++... |.|+..+..
T Consensus 273 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~ 345 (484)
T COG4783 273 DFQLARARIRAKYEALPNQQAADLLAKRSK-----RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLEL 345 (484)
T ss_pred cHHHHHHHHHHHhccccccchHHHHHHHhC-----ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHH
Confidence 444455555544444333444444433322 3455789999999999999999999999999865 788888889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.+.++.+.++.++|.+.+++++... |+ ...+..+..++.+.|++.+|+.+++.....
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~----------------------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALD----------------------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC----------------------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 9999999999999999999999863 44 667778899999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 205 RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
.+. |+..|..|.++|...|+..++.....+... ..|++++|...+....+.
T Consensus 404 ~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 404 DPE-DPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCC-CchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHHh
Confidence 655 899999999999999999999887766543 346777777766666554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-05 Score=71.33 Aligned_cols=247 Identities=10% Similarity=0.048 Sum_probs=164.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHH
Q 046930 185 FSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCA 264 (965)
Q Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 264 (965)
+.-.|++..++..-...... +.+...-.-+.++|...|.+.....-...-. .|.......+......-++.+.-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~~~----~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKEGK----ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccccccc----CChHHHHHHHHHHhhCcchhHHH
Confidence 44467887776655444332 1244444456677888887665443332211 23333333333333334444443
Q ss_pred H-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC
Q 046930 265 F-RLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQM 343 (965)
Q Consensus 265 ~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 343 (965)
. ++.+.+.......+......-+..|++.|++++|.+.... ..+......-+..+.+..+++-|.+.+++|.+..
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--- 167 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-GENLEAAALNVQILLKMHRFDLAEKELKKMQQID--- 167 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---
Confidence 3 4455555544443444455556678899999999999887 5566666666677788888999999999888753
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 046930 344 DIVMCNILIKALFM----VGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNC 419 (965)
Q Consensus 344 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 419 (965)
+..+.+.|..++.+ .+.+.+|.-+|++|-+. .+|+..+.+..+.++...|++++|..+++.++...+.++.+...
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 56777777777765 35688889999998774 36888888888889999999999999999999998888888888
Q ss_pred HHHHHHhcCChHHHH-HHHHHHHH
Q 046930 420 IINGLCKSGMVDMAT-EVFIELNE 442 (965)
Q Consensus 420 l~~~~~~~g~~~~A~-~~~~~~~~ 442 (965)
++.+-...|...++. +.+.++..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Confidence 887777777765544 34444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.8e-05 Score=86.58 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC---HhhHHHH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS---EVSYATL 697 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l 697 (965)
...|..|...|.+.+..++|.++|+.|.++ .......|...+..+.++++-+.|..++.++++.- |. .......
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL--PKQEHVEFISKF 1606 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--chhhhHHHHHHH
Confidence 344555666666666666666666666655 33355566666666666666666666666666532 22 2222333
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 046930 698 IYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP 759 (965)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 759 (965)
+..-.+.|+.+.+..+|+..+.. .+-....|+..++.-.++|+.+.+..+|+++...++.|
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 34445666666666666666654 23455566666666666666666666666666665555
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-05 Score=86.60 Aligned_cols=247 Identities=15% Similarity=0.096 Sum_probs=178.6
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCC-CCchHHHHHHHHHHHhcCChhhH
Q 046930 26 DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDE-NVKY-PFDNFVCSSVVSGFCKIGKPELA 103 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~A 103 (965)
.++.|.. |.+.++.+ |.++..|........+.++.++|.+++++++.. +++. ..-...|.++.+....-|.-+.-
T Consensus 1440 ~pesaeD-ferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAED-FERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CCcCHHH-HHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 4555655 44445544 566777888888888889999999999988764 2210 12234677777777777878888
Q ss_pred HHHHHHHHHcCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHH
Q 046930 104 IGFFENAISLGALKPNV-VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILL 182 (965)
Q Consensus 104 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 182 (965)
.+.|+++.+.. ++ ..|..|...|.+.+++++|.++++.|.+. . .-...+|..++
T Consensus 1517 ~kVFeRAcqyc----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-------------------F--~q~~~vW~~y~ 1571 (1710)
T KOG1070|consen 1517 KKVFERACQYC----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-------------------F--GQTRKVWIMYA 1571 (1710)
T ss_pred HHHHHHHHHhc----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-------------------h--cchhhHHHHHH
Confidence 88999988732 43 36778888899999999999999998874 1 24577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 046930 183 DGFSKEGTIEKAVGILNKMIEDRLRPN-LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDL 261 (965)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 261 (965)
..+.++++-+.|..++.++++.-++.. .......+..-.+.|+.+++..+|+...... |--...|+..++.-.+.|+.
T Consensus 1572 ~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1572 DFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred HHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCH
Confidence 888888888899999988887643322 2233444566678899999999999888765 55677899889888899999
Q ss_pred hHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcchHHH
Q 046930 262 DCAFRLLEDMEKKGIKPSI--VTYNTIINGLCKVGRTSDAEE 301 (965)
Q Consensus 262 ~~A~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~g~~~~a~~ 301 (965)
+.++.+|+++...++.|-. ..|...+..-...|+-+.++.
T Consensus 1651 ~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 9999999999888776653 355555554455566554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.6e-05 Score=69.29 Aligned_cols=189 Identities=16% Similarity=0.140 Sum_probs=109.3
Q ss_pred CCchHHHHHHHHHHHhC--C-CCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCCh
Q 046930 25 NDPEKALLVLKDCLRNH--G-TLPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKP 100 (965)
Q Consensus 25 ~~~~~A~~~~~~~~~~~--~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 100 (965)
.++++.++++..++... | .-++ -..+..+.-+..-.|+.+.|..++....+.- |.+..+...-+-.+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhch
Confidence 44555666555544322 1 1122 1234445555566667777777777666655 55666665566666667777
Q ss_pred hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHH
Q 046930 101 ELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTI 180 (965)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 180 (965)
++|+++|+..++.+ |.|...+-.-+.+.-..|+.-+|++-+...++. ...|..+|..
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---------------------F~~D~EAW~e 159 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---------------------FMNDQEAWHE 159 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---------------------hcCcHHHHHH
Confidence 77777777777655 455555555555566666666666666555543 2356677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcC
Q 046930 181 LLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKG---KLEEAFTVFKKVEDLG 240 (965)
Q Consensus 181 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 240 (965)
+...|...|++++|.-++++++-..|. ++..+..+...+.-.| +...+.+.|.+..+..
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 777777777777777777776654322 3444444444444333 3445666666666553
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00012 Score=72.60 Aligned_cols=288 Identities=11% Similarity=-0.066 Sum_probs=150.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHHcCCh
Q 046930 387 IDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVG-MHKIILQATFAKGGV 465 (965)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~~ 465 (965)
...+.+..++..|+..+..+++..|.+..-|..-+..+...|++++|.--.++-++. .|... ...-.-+.+...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 334556666777777777777777777777777777777777777776666555432 22211 111111111111111
Q ss_pred hhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccch-hcHHHH-HHHHHhcCcchhhhhhhH
Q 046930 466 GGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTD-QSYYSI-LKGLDNEGKKWLIGPLLS 543 (965)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l-~~~~~~~~~~~~~~~~~~ 543 (965)
.+|...++.- ..+....|+..++........++. ..+..+ ..++...++...+...-.
T Consensus 134 i~A~~~~~~~--------------------~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLKSK--------------------QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhhhh--------------------hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 1111111100 000112222223332222222211 222222 123444666777777777
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhh
Q 046930 544 MFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVD 623 (965)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 623 (965)
..++.+.....++.--..++....+.+.|+..|.+....++...-.... .. .+.-...
T Consensus 194 ~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~----------------~~------~~k~le~ 251 (486)
T KOG0550|consen 194 DILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA----------------SM------MPKKLEV 251 (486)
T ss_pred HHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH----------------hh------hHHHHHH
Confidence 7777777777777777777888888899999988877665522110000 00 0011222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC---CcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHHHHH
Q 046930 624 YSTIVAALCREGYVNKALDLCAFAKNKG---ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYATLIY 699 (965)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 699 (965)
|..-+.-..+.|++..|.+.|.+.+... ..|+...|-....+..+.|+.++|+.--+.+.+.+ +. ...+..-..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHH
Confidence 3333445566777777777777776642 23333445555556666777777777777666532 22 223333345
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 046930 700 NLCKEGQLLDAKKLFDRMVLK 720 (965)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~ 720 (965)
++...+++++|.+.|+++.+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 555666777777777776664
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-06 Score=73.12 Aligned_cols=98 Identities=7% Similarity=-0.100 Sum_probs=90.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
-.....++..+...|++++|.++|+.....+ |.+..-|..++-++...|++.+|+..|.++...+ +.++..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~a 109 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHH
Confidence 3456677777889999999999999999999 8999999999999999999999999999999987 7888899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 046930 127 VIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
+.++...|+.+.|.+.|+.++..
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998864
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.7e-06 Score=75.40 Aligned_cols=133 Identities=13% Similarity=0.124 Sum_probs=105.0
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTL-PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
.+..|..++..+ ..+++..+...+..++...+.. ........++..+...|++++|...|++++...+..+....+.
T Consensus 11 a~~~y~~~~~~~--~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 11 ASALYEQALQAL--QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 345777788775 6899999998899988765332 1234566688999999999999999999999764222335678
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRM 146 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 146 (965)
..++.++...|++++|+..++.... .+..+..+...+.++.+.|++++|+..|++.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8899999999999999999977432 2345567778999999999999999999875
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-06 Score=81.01 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=78.2
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
+..+ .+.++|.+|+..|..++... |.++..|..-+.+|.+.|.++.|++-.+.++..+ |....+|..|+.+|..
T Consensus 88 GN~~-m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 88 GNKL-MKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHH-HHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHc
Confidence 4444 57788888888888888755 5577778888888888888888888888888888 7788888888888888
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 97 IGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
.|++++|++.|.++++.+ |+..+|
T Consensus 162 ~gk~~~A~~aykKaLeld---P~Ne~~ 185 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELD---PDNESY 185 (304)
T ss_pred cCcHHHHHHHHHhhhccC---CCcHHH
Confidence 888888888888888854 444444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00013 Score=72.25 Aligned_cols=176 Identities=11% Similarity=-0.068 Sum_probs=131.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChh
Q 046930 387 IDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVG 466 (965)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 466 (965)
..++...|++++|...--.+++.++.+..+...-..++.-.++.+.|+..|++.+.. .|+..........+-
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k------ 247 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPK------ 247 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHH------
Confidence 455667888888888888888888778777777777777788888999999888865 455443333222211
Q ss_pred hHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC---ccchhcHHHHHHHHHhcCcchhhhhhhH
Q 046930 467 GVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGS---VVTDQSYYSILKGLDNEGKKWLIGPLLS 543 (965)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 543 (965)
.+ ..|..-+.-.++.|++..|.+.|.+.+..++ .+....|........+.|+..++..-++
T Consensus 248 ----~l------------e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~ 311 (486)
T KOG0550|consen 248 ----KL------------EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCN 311 (486)
T ss_pred ----HH------------HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence 11 1233334446889999999999999876553 4444556666667778899999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccc
Q 046930 544 MFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTV 586 (965)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 586 (965)
+.++..+....++.+-+.++.-++.+++|++.|++..+...+.
T Consensus 312 ~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 312 EALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9998888888899999999999999999999999988776653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-05 Score=69.49 Aligned_cols=99 Identities=7% Similarity=-0.111 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
-...+.+.-.+ .+.|++++|.++|+-+...+ +.+...|..|+.++-..|++++|+..|..+...+ |.++..+..
T Consensus 35 l~~lY~~A~~l-y~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~---~ddp~~~~~ 108 (157)
T PRK15363 35 LNTLYRYAMQL-MEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK---IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHH
Confidence 34555666665 68999999999999988766 5678889999999999999999999999999999 899999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.+.++...|+.+.|++.|+.++...
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-05 Score=70.95 Aligned_cols=128 Identities=15% Similarity=0.215 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC--HhhHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN--VVSYTSLV 127 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~ 127 (965)
|..++..+ ..++...+...++.+...++..+....+...++..+...|++++|...|++++... ..++ ..+...+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHH
Confidence 34444433 57899999999999999885444456778889999999999999999999999865 2222 23566788
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046930 128 IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKM 201 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 201 (965)
.++...|++++|+..++..... ...+..+...+.++.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~----------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE----------------------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc----------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999999999999999764321 234567778889999999999999999875
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00025 Score=69.37 Aligned_cols=188 Identities=12% Similarity=0.042 Sum_probs=114.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh-hHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV-SYT 124 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 124 (965)
++......+..+...|++++|++.|+.+....+..+....+...++.++.+.+++++|+..|++.++..+-.|+.. ++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 4455556677788899999999999999998854444445568899999999999999999999999864444443 444
Q ss_pred HHHHHHHhcC---------------C---hhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHH
Q 046930 125 SLVIALCMLG---------------R---VNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFS 186 (965)
Q Consensus 125 ~l~~~~~~~~---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 186 (965)
.++.++...+ + ..+|+..|+++++.- |+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y----------------------P~------------ 156 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY----------------------PN------------ 156 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC----------------------cC------------
Confidence 4444322221 1 124445555555432 22
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHhHH
Q 046930 187 KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGL--VADEFVYATLIDGVCRRGDLDCA 264 (965)
Q Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 264 (965)
..-..+|..-+..+... -...--.+...|.+.|.+..|..-++.+++.-. +........++.+|...|..++|
T Consensus 157 -S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 157 -SQYTTDATKRLVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred -ChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 12223333333222211 000111345567777778777777777776521 22234555666777777777777
Q ss_pred HHHHHHHH
Q 046930 265 FRLLEDME 272 (965)
Q Consensus 265 ~~~~~~~~ 272 (965)
..+...+.
T Consensus 232 ~~~~~~l~ 239 (243)
T PRK10866 232 DKVAKIIA 239 (243)
T ss_pred HHHHHHHh
Confidence 77665443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-06 Score=69.80 Aligned_cols=82 Identities=24% Similarity=0.280 Sum_probs=36.2
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhH
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELA 103 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 103 (965)
+|+++.|+..|++++...+..++...+..++.+|.+.|++++|+.+++. .+.+ +.+......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~---~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD---PSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH---HCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC---CCCHHHHHHHHHHHHHhCCHHHH
Confidence 3445555555555444432111233333345555555555555555544 2222 23334444445555555555555
Q ss_pred HHHHHH
Q 046930 104 IGFFEN 109 (965)
Q Consensus 104 ~~~~~~ 109 (965)
++.|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0081 Score=62.29 Aligned_cols=187 Identities=14% Similarity=0.128 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCChHHHHH
Q 046930 637 VNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQ---GCFVEAFRLFDSLERI-DMVPSEVSYATLIYNLCKEGQLLDAKK 712 (965)
Q Consensus 637 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 712 (965)
-+++.++++..+..-..-+..+|..+...-... +..+...+.++++... ...|+ .+|..++..-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 466777777766542232334444443322212 2366677777777663 33344 568888888888888999999
Q ss_pred HHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 046930 713 LFDRMVLKGFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKF-TVSAVINGFCQKGDMEGALGFFLDFNTK 790 (965)
Q Consensus 713 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (965)
+|.++.+.+..+ .+.+..+++.-|| .++..-|.++|+--++. -+|.. -....+.-+...++-+.|..+|++.+..
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999986666 6777788887655 56788999999886664 45543 3455677777889999999999999887
Q ss_pred CCCCChHH--HHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 791 GVSPDFLG--FLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 791 ~~~p~~~~--~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
++.|+... |..++.-=..-|++.-++++-++.....+
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 77777654 88888777789999999988877766544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-05 Score=68.10 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTL-PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.++.++..+ ...|++++|+..|..++...+.. .....+..++.++.+.|++++|...|+.++...+..+....++..+
T Consensus 4 ~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLV-LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445566665 66777777777777776654321 1234566677777777777777777777777654333345667777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+.++...|++++|...|++++...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 777777777777777777777654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=76.02 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
...-+.-+.+.++|++|+..|..+++.+ |.++..|...+.+|.+.|.++.|++-.+.++..+ |....+|..|+.+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A 158 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHH
Confidence 3445566778899999999999999999 8999999999999999999999999999999977 6677899999999
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 046930 130 LCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~ 149 (965)
|...|++++|++.|++.++.
T Consensus 159 ~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHccCcHHHHHHHHHhhhcc
Confidence 99999999999999999985
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-06 Score=54.03 Aligned_cols=31 Identities=42% Similarity=1.001 Sum_probs=13.4
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 046930 722 FKPSTRIYNSFIDGYCKFGQLEEAFKFLHDL 752 (965)
Q Consensus 722 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 752 (965)
+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.1e-05 Score=76.23 Aligned_cols=132 Identities=11% Similarity=0.035 Sum_probs=71.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH----CCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-Chh
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVL----KGFK-PSTRIYNSFIDGYCKFGQLEEAFKFLHDLKIN----CLEP-DKF 762 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 762 (965)
.|..|...|.-.|+++.|+...+.=+. -|-. .....+.++++++.-.|+++.|.+.|+..... |-+. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344555555556666666665544222 1211 12345566666666677777777666654322 2111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHh----CC-CCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 763 TVSAVINGFCQKGDMEGALGFFLDFNT----KG-VSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+..+|+.+|.-..++++|+.++.+=+. .+ ..-....+..|+.++...|..++|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455666666666667777766665322 11 111233466677777777777777666665554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-06 Score=53.58 Aligned_cols=32 Identities=38% Similarity=0.892 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046930 170 GIKPDTVSYTILLDGFSKEGTIEKAVGILNKM 201 (965)
Q Consensus 170 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 201 (965)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666677777777777777777777776665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-05 Score=67.10 Aligned_cols=103 Identities=11% Similarity=0.060 Sum_probs=86.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-CCHhhHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALK-PNVVSYTSL 126 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l 126 (965)
.++..++..+.+.|++++|.+.|..++..++..+....++..++.++.+.|+++.|+..|++++...+-. ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4567788889999999999999999998874334446788999999999999999999999999865211 125678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC
Q 046930 127 VIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
+.++.+.|++++|...++++++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999999864
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.4e-05 Score=70.95 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=70.8
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.....+..++..+...|++++|...|+++++..+..+....++..++.++.+.|++++|+..|+++++.. |.+...+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHH
Confidence 3455678888888899999999999999987653223345788999999999999999999999999865 55677777
Q ss_pred HHHHHHHhcCC
Q 046930 125 SLVIALCMLGR 135 (965)
Q Consensus 125 ~l~~~~~~~~~ 135 (965)
.++.++...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 88888877776
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00038 Score=60.89 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=43.9
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
|+..--..|+.++.+.|++.+|...|++....-. ..++..+..++++....+++..|...++++.+.++-..++....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f--A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIF--AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc--CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3333333444444444444444444444443322 33444444444444444444444444444444322122223333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 046930 125 SLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.+++.+...|++..|+..|+.++.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 344444444444444444444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.3e-05 Score=80.76 Aligned_cols=103 Identities=12% Similarity=0.009 Sum_probs=83.0
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC 95 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (965)
.+..+ ...|+++.|+..|++++... +.+...+..++.+|...|++++|+..++.++..+ |.+..++..++.+|.
T Consensus 8 ~a~~a-~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 8 KAKEA-FVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD---PSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHH
Confidence 34444 57789999999999988866 4567788888888999999999999999999888 788888999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 96 KIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
..|++++|+..|++++..+ |.+......+
T Consensus 82 ~lg~~~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HhCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 9999999999999998866 4444444433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.3e-05 Score=71.56 Aligned_cols=119 Identities=11% Similarity=0.034 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHH
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGF 106 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 106 (965)
+..+...+...++..+.......+..++..+...|++++|+..|..++...+.++..+.++..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555554444443344667788888899999999999999999887532233456899999999999999999999
Q ss_pred HHHHHHcCCCCCCHhhHHHHHHHHH-------hcCChhHHHHHHHHHH
Q 046930 107 FENAISLGALKPNVVSYTSLVIALC-------MLGRVNEVNELFVRME 147 (965)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~A~~~~~~~~ 147 (965)
|++++... +.....+..++.++. ..|++++|...+++..
T Consensus 95 ~~~Al~~~--~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 95 YFQALERN--PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHhC--cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 99999865 555666777777777 7888886666555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00083 Score=65.75 Aligned_cols=185 Identities=12% Similarity=0.053 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSS-FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.++..+..+ ...|++++|+..|+.++...+..+-. .....++.++.+.+++++|+..|+++++..|.+|..+.++..+
T Consensus 34 ~~Y~~A~~~-~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 34 EIYATAQQK-LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 455556655 68999999999999988866433221 2236788999999999999999999999998888888899998
Q ss_pred HHHHHhcC---------------C---hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCc
Q 046930 91 VSGFCKIG---------------K---PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLK 152 (965)
Q Consensus 91 ~~~~~~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 152 (965)
+.++...+ + ..+|++.|++.++.- |.+.. ..+|......+...
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~y--------------a~~A~~rl~~l~~~--- 173 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQY--------------TTDATKRLVFLKDR--- 173 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChh--------------HHHHHHHHHHHHHH---
Confidence 87754433 1 235778888888754 33322 22222222222110
Q ss_pred cchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHH
Q 046930 153 FDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR--LRPNLITYTAIIFGFCKKGKLEEAF 230 (965)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 230 (965)
=..--..+..-|.+.|.+..|..-|+.+++.= .+....+...++.+|...|..++|.
T Consensus 174 ---------------------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 174 ---------------------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred ---------------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence 00111135556788888888888888888752 2224455667778888888888888
Q ss_pred HHHHHHH
Q 046930 231 TVFKKVE 237 (965)
Q Consensus 231 ~~~~~~~ 237 (965)
.+...+.
T Consensus 233 ~~~~~l~ 239 (243)
T PRK10866 233 KVAKIIA 239 (243)
T ss_pred HHHHHHh
Confidence 7766554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.1e-06 Score=66.72 Aligned_cols=83 Identities=20% Similarity=0.221 Sum_probs=66.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 046930 60 QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEV 139 (965)
Q Consensus 60 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 139 (965)
.|+++.|+..|+++++..+.. ++...+..++.+|.+.|++++|+.++++ ...+ +.+......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~-~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN-PNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT-HHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHH
Confidence 589999999999999998421 1566788899999999999999999998 4433 34456666779999999999999
Q ss_pred HHHHHHH
Q 046930 140 NELFVRM 146 (965)
Q Consensus 140 ~~~~~~~ 146 (965)
+++++++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999864
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.4e-05 Score=79.89 Aligned_cols=95 Identities=15% Similarity=0.069 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
...+..+...|++++|+..|.++++.+ |.+..++..++.+|...|++++|+..+++++..+ |.+...|..++.+|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~ 80 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHH
Confidence 345667888999999999999999999 8899999999999999999999999999999987 67788999999999
Q ss_pred HhcCChhHHHHHHHHHHHCC
Q 046930 131 CMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 131 ~~~~~~~~A~~~~~~~~~~~ 150 (965)
...|++++|+..|+++++.+
T Consensus 81 ~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999864
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.1e-05 Score=64.20 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
+..++..+...|++++|+..++.+.+.. |.+..++..++.++...|++++|.+.|+++.... +.+...+..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHH
Confidence 3445555666666666666666666665 4455666666666666666777777666666644 3444556666666
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 046930 130 LCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~ 148 (965)
+...|++++|...+.+..+
T Consensus 78 ~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 78 YYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHhHHHHHHHHHHHHc
Confidence 6666666666666666654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00011 Score=76.22 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=111.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
+.+....++..+...++++.|+.+|+++.+.+ | ++...+++++...++-.+|++++.+++... |.+...+..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~ 239 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD---P---EVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNL 239 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC---C---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 45667778888888899999999999999887 3 456678999999999999999999999865 677778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
.+..+.+.++++.|+++.+++.... +.+..+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~ls---------------------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVELS---------------------PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC---------------------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888999999999999999999863 24577999999999999999999999998764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.2e-05 Score=69.14 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=75.4
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
|.....++.++..+ ...|++++|+..|+++++..+.++. ...+..++.++.+.|++++|+..+++++... |.+..
T Consensus 32 ~~~a~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~ 107 (172)
T PRK02603 32 AKEAFVYYRDGMSA-QADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPS 107 (172)
T ss_pred hhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHH
Confidence 34555777888776 7889999999999999976543332 4678899999999999999999999999988 77888
Q ss_pred HHHHHHHHHHhcCCh
Q 046930 86 VCSSVVSGFCKIGKP 100 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~ 100 (965)
.+..++.++...|+.
T Consensus 108 ~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 108 ALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHcCCh
Confidence 999999999998874
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-05 Score=59.37 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=51.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.++..+.+.|++++|+..|+.+++.+ |.+..++..++.++...|++++|+..|+++++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35677888999999999999999888 7899999999999999999999999999998865
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.7e-05 Score=76.57 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.+-..|+..+ ...++++.|+.+|++..+.. | .+...+++++...++-.+|++++.+.++.+ |.+...+..-
T Consensus 170 yLv~~Ll~~l-~~t~~~~~ai~lle~L~~~~---p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~---p~d~~LL~~Q 240 (395)
T PF09295_consen 170 YLVDTLLKYL-SLTQRYDEAIELLEKLRERD---P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN---PQDSELLNLQ 240 (395)
T ss_pred HHHHHHHHHH-hhcccHHHHHHHHHHHHhcC---C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 3444555544 77899999999999966543 3 356678889999999999999999999887 7889999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 147 (965)
+..+...++++.|+.+.+++.... |.+..+|..++.+|.+.|+++.|+..+..+.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999976 6677799999999999999999999887765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00012 Score=72.09 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=45.6
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hc----CCCCHHHHHHHHHH
Q 046930 354 ALFMVGALEDARALYQAMPEMNLVAN----SVTYSTMIDGYCKLGRIEEALEIFDELR--RM----SISSVACYNCIING 423 (965)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~----~~~~~~~~~~l~~~ 423 (965)
-+++.|+......+|+..++-|. .| +.+|..|..+|.-.+++++|+++...=+ .. ......+-..++..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 46777777777777777777652 22 2356666677777777777776543211 10 11122333344445
Q ss_pred HHhcCChHHHHHHH
Q 046930 424 LCKSGMVDMATEVF 437 (965)
Q Consensus 424 ~~~~g~~~~A~~~~ 437 (965)
+.-.|.+++|+..-
T Consensus 105 lKv~G~fdeA~~cc 118 (639)
T KOG1130|consen 105 LKVKGAFDEALTCC 118 (639)
T ss_pred hhhhcccchHHHHH
Confidence 55555555555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00093 Score=63.79 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=48.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+..+...+..+...|++.+|+..|+.+....+..|....+...++.++.+.|++++|+..|++.++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34455566667778888888888888887776666777777888888888888888888888877765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0011 Score=58.12 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=109.6
Q ss_pred CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---ChhH
Q 046930 687 MVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP---DKFT 763 (965)
Q Consensus 687 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~ 763 (965)
..|+...-..|..+..+.|++.+|...|++...--+.-|....-.++.+....++..+|...++++.+. .| .+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCc
Confidence 347777777888899999999999999999987555668888889999999999999999999998875 34 3455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 764 VSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
...+..+|...|.+++|...|+.+++ ..|+...-...+..+.++|+.+||..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 66778889999999999999999866 788887766677888899998888776655544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.7e-05 Score=59.24 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=45.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcC
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG-KPELAIGFFENAISLG 114 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 114 (965)
++.++..++..+...|++++|+..|.++++.+ |.++.++..++.++...| ++++|++.|+++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 34566666777777777777777777777776 666777777777777777 5777777777776643
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00028 Score=59.36 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---CHhhHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKP---NVVSYTSLV 127 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~ 127 (965)
..++.++-..|+.++|+..|++++..+...+....++..++..+...|++++|+.+|++..... |. +......+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence 3445556666777777777777766653223335566667777777777777777777766542 22 222333344
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 046930 128 IALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~ 147 (965)
-++...|+.++|++.+-..+
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 45666677777776665544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0025 Score=64.67 Aligned_cols=136 Identities=10% Similarity=0.110 Sum_probs=76.4
Q ss_pred HHHHHHHHhc-CcHHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-----Chh
Q 046930 660 NTVIHSLCRQ-GCFVEAFRLFDSLERI----DMVPS--EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKP-----STR 727 (965)
Q Consensus 660 ~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~ 727 (965)
..++..|... |++++|++.|+++... + .+. ..++..++..+.+.|++++|+++|+++....... +..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 3345556666 7777777777776552 2 111 3445666777888888888888888887642211 111
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCC--hhHHHHHHHHHHh--cCCHHHHHHHHHHhHhCCCCCChHH
Q 046930 728 -IYNSFIDGYCKFGQLEEAFKFLHDLKIN--CLEPD--KFTVSAVINGFCQ--KGDMEGALGFFLDFNTKGVSPDFLG 798 (965)
Q Consensus 728 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (965)
.+...+-++...||+-.|...+++.... ++... ......|+.++.. ...+++++.-|+.+ ..+.|...+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~--~~ld~w~~~ 272 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI--SRLDNWKTK 272 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS--S---HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc--CccHHHHHH
Confidence 2233344566678888888888887753 12222 2355667777732 34566777777766 334444333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00033 Score=67.59 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=48.1
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhc---CCHHH
Q 046930 117 KPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKE---GTIEK 193 (965)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~ 193 (965)
|.|...|..++.+|...|+++.|...|.++.+.. .+++..+..+..++..+ ..-.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---------------------g~n~~~~~g~aeaL~~~a~~~~ta~ 211 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA---------------------GDNPEILLGLAEALYYQAGQQMTAK 211 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHhcCCcccHH
Confidence 4445555555555555555555555555555432 13344444444333221 12344
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 194 AVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 194 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
+.++|+++++.++. |+.+...|...+...|++.+|...|+.|.+.
T Consensus 212 a~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 212 ARALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555554332 4444445555555555555555555555554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00028 Score=68.04 Aligned_cols=116 Identities=13% Similarity=0.061 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC---ChhhHH
Q 046930 28 EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG---KPELAI 104 (965)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 104 (965)
+..+.-++.-+..+ |.|...|..|+.+|...|++..|...|..+.+.. |++++.+..++.++..+. ...++.
T Consensus 139 ~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 139 EALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA---GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 34444556656655 6788999999999999999999999999999998 899999999999887754 456899
Q ss_pred HHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 105 GFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.+|++++..+ +.|+.+...++..+...|++.+|...++.|++..
T Consensus 214 ~ll~~al~~D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 214 ALLRQALALD--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999988 7888889999999999999999999999999864
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.018 Score=61.50 Aligned_cols=215 Identities=11% Similarity=0.042 Sum_probs=136.4
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046930 117 KPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVG 196 (965)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 196 (965)
.|.+..|..+.......-.++.|+..|-+.....- . .++ .+.+.-.+...-..=+.+| -|++++|++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~G---i----k~v----krl~~i~s~~~q~aei~~~--~g~feeaek 755 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAG---I----KLV----KRLRTIHSKEQQRAEISAF--YGEFEEAEK 755 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccc---h----hHH----HHhhhhhhHHHHhHhHhhh--hcchhHhhh
Confidence 57888888888777666677777777765543200 0 000 0000000011111112222 589999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046930 197 ILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG-LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKG 275 (965)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 275 (965)
+|-+|-++ | ..+..+.+.|+|-...++++.--... -..-...++.+...++....|++|.++|.....
T Consensus 756 ~yld~drr----D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 756 LYLDADRR----D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhhccchh----h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 99888654 2 34556777788888777765421100 011235788888889988999999999876542
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 046930 276 IKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKAL 355 (965)
Q Consensus 276 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 355 (965)
....+.++.+...+++-+.+...+|.+......+..++.+.|--++|.+.+-+.. .|. ..+..|
T Consensus 825 -------~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tC 888 (1189)
T KOG2041|consen 825 -------TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTC 888 (1189)
T ss_pred -------hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHH
Confidence 1235677888888888888888888888888888888888888888887765432 111 234456
Q ss_pred HhcCCHHHHHHHHHHc
Q 046930 356 FMVGALEDARALYQAM 371 (965)
Q Consensus 356 ~~~g~~~~A~~~~~~~ 371 (965)
...+++.+|.++-+..
T Consensus 889 v~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777888888776654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.7e-05 Score=61.45 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
.|..++..+ ...|++++|+..++.+++.. +.+..++..++.++...+++++|.+.|+...... |.+..++..++
T Consensus 2 ~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLY-YKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHH-HHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcchhHHHHHH
Confidence 466777777 67899999999999988755 4455778889999999999999999999999987 66778999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 046930 92 SGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.++...|++++|...+.++....
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHccC
Confidence 99999999999999999988643
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00064 Score=64.91 Aligned_cols=165 Identities=14% Similarity=0.095 Sum_probs=117.2
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
...++..+..+ .+.|++.+|+..|+.+....+..+ .+.+...++.++.+.|+++.|+..|+.+++..|.+|..+.++.
T Consensus 5 ~~~lY~~a~~~-~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 5 AEALYQKALEA-LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHH-HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 34556666665 799999999999999888765433 3456778899999999999999999999999987788888888
Q ss_pred HHHHHHHhcC-----------ChhhHHHHHHHHHHcCCCCCCHhhH-----------------HHHHHHHHhcCChhHHH
Q 046930 89 SVVSGFCKIG-----------KPELAIGFFENAISLGALKPNVVSY-----------------TSLVIALCMLGRVNEVN 140 (965)
Q Consensus 89 ~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~A~ 140 (965)
.++.++.... ...+|+..|+..+..- |.+..+- ..++..|.+.|.+..|.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 8888766543 3458999999999865 3332221 13456678899999999
Q ss_pred HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046930 141 ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAV 195 (965)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 195 (965)
.-++.+++.-+.. .....+...++.+|.+.|..+.+.
T Consensus 162 ~r~~~v~~~yp~t------------------~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 162 IRFQYVIENYPDT------------------PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHSTTS------------------HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHCCCC------------------chHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999863211 112345677888888888877544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.7e-05 Score=58.51 Aligned_cols=65 Identities=28% Similarity=0.289 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHC
Q 046930 83 DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLG-RVNEVNELFVRMESE 149 (965)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 149 (965)
++.+|..++..+...|++++|+..|+++++.+ |.++..|..++.++...| ++++|+..++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56889999999999999999999999999987 677889999999999999 799999999999875
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00024 Score=65.81 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
....|+.++..+ ...|++++|+..|+.++...+.++ ...++..++.++...|++++|+..++.++... |.....+
T Consensus 34 ~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~ 109 (168)
T CHL00033 34 EAFTYYRDGMSA-QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHH
Confidence 344667777765 789999999999999987654322 24578999999999999999999999999987 6777888
Q ss_pred HHHHHHHH-------hcCChhhHHHHHHHH
Q 046930 88 SSVVSGFC-------KIGKPELAIGFFENA 110 (965)
Q Consensus 88 ~~l~~~~~-------~~g~~~~A~~~~~~~ 110 (965)
..++.++. ..|+++.|+..|+++
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 88888888 778877555555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00053 Score=69.58 Aligned_cols=154 Identities=17% Similarity=0.200 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHHHH----CCCCCC--hhhHHHHHHHHHhc-CCHHHHHHHHHHhhhC----CCCCC--hhHHHHHHHHHH
Q 046930 706 QLLDAKKLFDRMVL----KGFKPS--TRIYNSFIDGYCKF-GQLEEAFKFLHDLKIN----CLEPD--KFTVSAVINGFC 772 (965)
Q Consensus 706 ~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~ 772 (965)
++++|+++|+++.. .| .|+ ...+..++.+|... |++++|++.|+++.+. + .+. ..++..++..+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 66666666666554 22 222 33556677788887 8999999999887654 2 221 246677888899
Q ss_pred hcCCHHHHHHHHHHhHhCCCC-----CChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHH
Q 046930 773 QKGDMEGALGFFLDFNTKGVS-----PDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLN 846 (965)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~-----p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (965)
+.|++++|+++|++....-+. .+... +...+-++...|+...|.+.+++..+..+.. ....+...+..
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F------~~s~E~~~~~~ 240 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF------ASSREYKFLED 240 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS------TTSHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CCcHHHHHHHH
Confidence 999999999999998764322 12222 3445556678999999999999988743210 01112224556
Q ss_pred HHHHhhh--cCcHHHHHHHHHHH
Q 046930 847 FLISLCE--QGSILEAIAILDEI 867 (965)
Q Consensus 847 l~~~~~~--~g~~~~A~~~~~~~ 867 (965)
|+.++.. ...+++|+.-|+.+
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHccc
Confidence 6666643 45677777777654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00099 Score=72.86 Aligned_cols=143 Identities=14% Similarity=0.078 Sum_probs=98.2
Q ss_pred CcccHHHHHHHHHHHHh--c---CcHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHcc--------CChHHHHHHHHHH
Q 046930 652 ITVNIVTYNTVIHSLCR--Q---GCFVEAFRLFDSLERIDMVPS-EVSYATLIYNLCKE--------GQLLDAKKLFDRM 717 (965)
Q Consensus 652 ~~~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 717 (965)
.+.|..+|...+++... . ++...|+.+|+++++.. |+ ...+..+..++... ++...+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 45566777777665432 2 23668888888888844 66 44455444333221 1233444444444
Q ss_pred HHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh
Q 046930 718 VLK-GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF 796 (965)
Q Consensus 718 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (965)
... ..+.+...+..++-.+...|++++|...+++++.. .|+..+|..++..+...|+.++|++.|+++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 432 12345677888877777889999999999999984 67888899999999999999999999999855 78887
Q ss_pred HHHH
Q 046930 797 LGFL 800 (965)
Q Consensus 797 ~~~~ 800 (965)
.+|+
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 7765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.001 Score=72.68 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 175 TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 175 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
+.+|..+.......|++++|...|++++..+ |+...|..+...+...|+.++|.+.|++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444555555555555555543 34455555555555555555555555555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00033 Score=68.93 Aligned_cols=101 Identities=6% Similarity=0.013 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCCHhhHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGAL-KPNVVSYTSLVI 128 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~ 128 (965)
|..-...+.+.|++++|+..|+.+++..+..+..+.++..++.+|...|++++|+..|+++++..+- +....++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333466799999999999999998544444689999999999999999999999999976411 223557778888
Q ss_pred HHHhcCChhHHHHHHHHHHHCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
++...|+.++|...|+++++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999999998864
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0004 Score=68.38 Aligned_cols=103 Identities=10% Similarity=-0.005 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.++..+..+..+.|++++|+..|+..++..+-.+ .+.++..++.+|...|++++|+..|+.+++..+..|..+.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333333567999999999999998764322 245788999999999999999999999999887668889999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+.++...|++++|...|+++++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999864
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.055 Score=55.22 Aligned_cols=149 Identities=12% Similarity=0.129 Sum_probs=91.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
-+-.+-+.+++.+|.++|.++-+..-.. .+.+ .....-+.++++|. .++.+.....+....+..
T Consensus 12 Qgf~Lqkq~~~~esEkifskI~~e~~~~-~f~l--------------keEvl~grilnAff-l~nld~Me~~l~~l~~~~ 75 (549)
T PF07079_consen 12 QGFILQKQKKFQESEKIFSKIYDEKESS-PFLL--------------KEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF 75 (549)
T ss_pred hhHHHHHHhhhhHHHHHHHHHHHHhhcc-hHHH--------------HHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc
Confidence 3445678899999999999987641100 0000 01223456667776 457777777777776653
Q ss_pred CCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHHc--CCCC------------CHhHHHHHHHHHHhcCCHhHHHHHHH
Q 046930 206 LRPNLITYTAII--FGFCKKGKLEEAFTVFKKVEDL--GLVA------------DEFVYATLIDGVCRRGDLDCAFRLLE 269 (965)
Q Consensus 206 ~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 269 (965)
+. ..|-.+. -...+.+.+++|++.+..-.+. +..+ |-..=+..+.++...|++.++..+++
T Consensus 76 ~~---s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 76 GK---SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred CC---chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 22 2233332 3356788999998888665543 2111 11222345567788999999999988
Q ss_pred HHHHC----CCCCCHHHHHHHHHHHHhc
Q 046930 270 DMEKK----GIKPSIVTYNTIINGLCKV 293 (965)
Q Consensus 270 ~~~~~----g~~~~~~~~~~l~~~~~~~ 293 (965)
++..+ ....+..+|+.++-++.++
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 88654 3346788888876666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=5e-05 Score=57.57 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=37.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 58 CSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
...|++++|+..|+.+++.+ |.+..++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45677777777777777776 6677777777777777777777777777776644
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.083 Score=56.67 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=77.8
Q ss_pred HHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHH-------HHHHHhcCChHH
Q 046930 361 LEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM-SISSVACYNCI-------INGLCKSGMVDM 432 (965)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l-------~~~~~~~g~~~~ 432 (965)
.++|.++.+. .|.+..|..+.......-.++.|+..|-+...- +..-+.-...+ +..-.--|++++
T Consensus 679 ledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 679 LEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred hHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 4555554432 478888888888777777778787777654332 11111101100 111122478888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhccc-ccchhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 046930 433 ATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRS-EIYDIICNDVISFLCKRGSSEVASELYMFM 510 (965)
Q Consensus 433 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (965)
|.++|-.|-++++ .+....+.|++-.+.++++.-..-.. ..-..+|+.++..+.....+++|.+.|...
T Consensus 753 aek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 753 AEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888877655421 22333445555555555443221111 123378888888898889999998888764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0012 Score=55.57 Aligned_cols=113 Identities=14% Similarity=0.187 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS--SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
..+.....+ ...|++++|+..|+.++.. |.... ...+..++..+...|++++|+.+|+......+..+.+......
T Consensus 3 ~~~~~A~a~-d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAH-DSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHH-HhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 445566666 7899999999999999874 54443 4578889999999999999999999999876321226666666
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
++-++...|++++|++++-.++. ++...|..-+..|.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 77788999999999999988875 33335555555543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00079 Score=58.94 Aligned_cols=96 Identities=10% Similarity=0.100 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.....+.-+...|++++|..+|.-+.-.+ |.+++-|..++.++...+++++|+..|..+...+ +.|+......+.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agq 113 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHH
Confidence 34556666789999999999999999888 7888999999999999999999999999998876 567777888999
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 046930 129 ALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~ 149 (965)
++...|+.+.|...|+.++..
T Consensus 114 C~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999863
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.025 Score=53.72 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=60.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV 121 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 121 (965)
..+..-+..-.+.|++++|.+.|+.+....+..|-...+...++-++.+.+++++|+..+++.+...+-.||..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 34444555577889999999999999998877788888899999999999999999999999998875555554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0018 Score=61.82 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGT-LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.|+.-+..| +.|+|..|...|...++.-+- .-.+.++..|++++..+|++++|..+|..+.+..+.+|..++++..+
T Consensus 144 ~Y~~A~~~~--ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY--KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 455555543 677788888888777764321 11244566777777788888888888888777777777777778888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+.+..+.|+.++|..+|+++.+.-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHC
Confidence 888888888888888888877754
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00072 Score=67.79 Aligned_cols=127 Identities=12% Similarity=0.064 Sum_probs=100.1
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCC----CC---------CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGT----LP---------SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD 83 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (965)
+..| .+.|+|..|...|++++.--+. ++ -..++..++.++.+.+.+..|+.....++..+ |.|
T Consensus 215 Gn~~-fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N 290 (397)
T KOG0543|consen 215 GNVL-FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD---PNN 290 (397)
T ss_pred hhHH-HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCc
Confidence 3445 6889999999999998764431 11 12367889999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh-HHHHHHHHHHHC
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN-EVNELFVRMESE 149 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~ 149 (965)
..+++..+.++...|+++.|+..|+++++.. |.|-.+-..+..+-.+...+. ...++|..|...
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999976 555555555665544444444 446788888764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=54.01 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.++..+...|++++|+..|+++++.. |.+...+..++.++...|++++|...|+++++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46889999999999999999999876 6678899999999999999999999999998764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00021 Score=54.12 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=55.8
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
.+.|++++|+..|+.++... |.+..+...++.+|.+.|++++|..+++.+...+ |.++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHHHHh
Confidence 47899999999999999876 5688899999999999999999999999999998 66666665554
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=63.13 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-CHhhHHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKP-NVVSYTSLVIA 129 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~ 129 (965)
...+-.+.+.|++..|...|...++..++.+..+.+++.++.++...|++++|...|..+.+..+-.| -+..+..++.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 34444577889999999999999999987788889999999999999999999999999998653333 34689999999
Q ss_pred HHhcCChhHHHHHHHHHHHCC
Q 046930 130 LCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~ 150 (965)
..+.|+.++|...|+++++.-
T Consensus 225 ~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHC
Confidence 999999999999999999874
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.1 Score=52.08 Aligned_cols=207 Identities=14% Similarity=0.085 Sum_probs=124.0
Q ss_pred chhhHHHHHHHHH-HccCCchHHHHHHHHHHHhCCCCCCHHhHHH--HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 9 QSRFFDSLIQGFC-IKRNDPEKALLVLKDCLRNHGTLPSSFTFCS--LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 9 ~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.+..|..|...+. .-.||-..|.+.-.+..+.- ..|...... -+++-.-.|+++.|.+-|+.|+... ....-
T Consensus 81 RdrgyqALStGliAagAGda~lARkmt~~~~~ll--ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP---EtRll 155 (531)
T COG3898 81 RDRGYQALSTGLIAAGAGDASLARKMTARASKLL--SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP---ETRLL 155 (531)
T ss_pred hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhhh--hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh---HHHHH
Confidence 3446677776653 35688888888777654322 334443333 3455567899999999999998642 11111
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
-+..+.-.-.+.|..+-|+++-+++-... |.-...+...+...+..|+|+.|+++.+.-+...
T Consensus 156 GLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--------------- 218 (531)
T COG3898 156 GLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--------------- 218 (531)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH---------------
Confidence 22333334457899999999999998765 4555688899999999999999999998877532
Q ss_pred hhhcCCCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 166 MVDKGIKPDTVS--YTILLDGFS---KEGTIEKAVGILNKMIEDRLRPNLIT-YTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 166 ~~~~~~~~~~~~--~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
-+.+++.- -..|+.+-. -..+...|...-.+..+. .|+... -..-..++.+.|+..++-.+++.+-+.
T Consensus 219 ----vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 219 ----VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred ----hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 22344221 112222211 122344455544444443 333222 222345566666666666666666665
Q ss_pred CCCC
Q 046930 240 GLVA 243 (965)
Q Consensus 240 ~~~~ 243 (965)
.+.|
T Consensus 293 ePHP 296 (531)
T COG3898 293 EPHP 296 (531)
T ss_pred CCCh
Confidence 4333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00025 Score=54.67 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=51.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 54 VYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
..+|.+.+++++|+++++.++..+ |.++..+...+.++...|++.+|.+.|+++++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456888899999999999999988 7888999999999999999999999999999866
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0025 Score=54.59 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=29.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
-+....+.|+|++|++.|+.+....+..+....+...++.+|.+.|++++|+..+++.++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33334444555555555555544443334444444455555555555555555555555444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0029 Score=54.14 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
..+..-+... .+.|+|+.|++.|..+....+..+ ...+...++.+|.+.+++++|+..++++++.++++|.-..++..
T Consensus 11 ~~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3455555555 699999999999999766554433 35567789999999999999999999999999988888889998
Q ss_pred HHHHHHhcCC---------------hhhHHHHHHHHHHc
Q 046930 90 VVSGFCKIGK---------------PELAIGFFENAISL 113 (965)
Q Consensus 90 l~~~~~~~g~---------------~~~A~~~~~~~~~~ 113 (965)
.|-++..... ...|...|+++++.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 8888877665 55666666666654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0002 Score=45.44 Aligned_cols=33 Identities=36% Similarity=0.822 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC
Q 046930 763 TVSAVINGFCQKGDMEGALGFFLDFNTKGVSPD 795 (965)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 795 (965)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666677777766666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00026 Score=44.93 Aligned_cols=33 Identities=33% Similarity=0.803 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 046930 177 SYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN 209 (965)
Q Consensus 177 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (965)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777765
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0035 Score=63.25 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYN-LCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDG 735 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 735 (965)
.+|..+++...+.+..+.|..+|.++.+.+ ..+..+|...+.. |...++.+.|.++|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777888888888888888888887543 2233444444444 33356666688888888876 56677778888888
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh
Q 046930 736 YCKFGQLEEAFKFLHDLKINCLEPDK---FTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF 796 (965)
Q Consensus 736 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (965)
+...|+.+.|..+|++.+.. +.++. ..|...+.-=.+.|+.+.+.++.+++.+ ..|+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hhhhh
Confidence 88888888888888888765 33333 3677777766778888888888888865 45553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00024 Score=44.63 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 176 VSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356677777777777777777777777666665
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0032 Score=55.24 Aligned_cols=94 Identities=10% Similarity=-0.092 Sum_probs=80.4
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
.....-.+ -+.|++++|..+|+-...-+ +.++..+..|+.++-..+++++|+..|..+...+ +.++......+.
T Consensus 40 iY~~Ay~~-y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~---~~dp~p~f~agq 113 (165)
T PRK15331 40 LYAHAYEF-YNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL---KNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cCCCCccchHHH
Confidence 33444444 58999999999999977655 4567788999999999999999999999988877 567777889999
Q ss_pred HHHhcCChhhHHHHHHHHHH
Q 046930 93 GFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~ 112 (965)
+|...|+.+.|+..|+.++.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999987
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.17 Score=50.58 Aligned_cols=294 Identities=12% Similarity=0.066 Sum_probs=151.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHHcCChhh
Q 046930 392 KLGRIEEALEIFDELRRMSISSVACYNCIING--LCKSGMVDMATEVFIELNEKGLSLYVG--MHKIILQATFAKGGVGG 467 (965)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~g~~~~ 467 (965)
..|+-..|.++-.+..+.-..|......++.+ -.-.|+++.|.+-|+.|+.. |... -+.-+.-...+.|..+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 45667777776666554433444444444443 33567778888888877752 2222 12222223344566666
Q ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHH
Q 046930 468 VLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVK 547 (965)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 547 (965)
+...-.+....-|... ..+...++..+..|+++.|+++.+........-...
T Consensus 173 Ar~yAe~Aa~~Ap~l~-WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~--------------------------- 224 (531)
T COG3898 173 ARHYAERAAEKAPQLP-WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV--------------------------- 224 (531)
T ss_pred HHHHHHHHHhhccCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh---------------------------
Confidence 6655555555444332 456666777788888888888877654422110000
Q ss_pred hcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHH
Q 046930 548 ENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTI 627 (965)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 627 (965)
.. -.. .....+-
T Consensus 225 --------ae-----------R~r-------------------------------------------------AvLLtAk 236 (531)
T COG3898 225 --------AE-----------RSR-------------------------------------------------AVLLTAK 236 (531)
T ss_pred --------HH-----------HHH-------------------------------------------------HHHHHHH
Confidence 00 000 0000000
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHH-HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 046930 628 VAALCREGYVNKALDLCAFAKNKGITVNIVTYN-TVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQ 706 (965)
Q Consensus 628 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 706 (965)
...... -+...|...-.+..+. .|+...-. .-...+.+.|+..++-.+++.+=+.. |.+.+....+ +.+.|
T Consensus 237 A~s~ld-adp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~g- 308 (531)
T COG3898 237 AMSLLD-ADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSG- 308 (531)
T ss_pred HHHHhc-CChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCC-
Confidence 001111 1234444444444332 44443222 23356677777777777777776644 3333322222 22333
Q ss_pred hHHHHHHHHHHHHC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHH-hcCCHHHHHHH
Q 046930 707 LLDAKKLFDRMVLK-GFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFC-QKGDMEGALGF 783 (965)
Q Consensus 707 ~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~ 783 (965)
+-++.-+++..+. ..+| +.++...++.+-...|++..|..--+.... ..|....|..|...-. ..|+-.++.+.
T Consensus 309 -dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 309 -DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred -CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 3333333333321 2333 455666667777777777777766666665 3677777777766654 33777777777
Q ss_pred HHHhHhCCCCCC
Q 046930 784 FLDFNTKGVSPD 795 (965)
Q Consensus 784 ~~~~~~~~~~p~ 795 (965)
+-+......+|.
T Consensus 386 lAqav~APrdPa 397 (531)
T COG3898 386 LAQAVKAPRDPA 397 (531)
T ss_pred HHHHhcCCCCCc
Confidence 777665444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0044 Score=50.84 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH--hhHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV--VSYTSLV 127 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~ 127 (965)
...-+.++...|+++.|++.|.+.+..- |.++.+|+..+.++.-+|+.++|++-++++++..|..... .+|..-+
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 4445567889999999999999999987 8899999999999999999999999999999976433222 2566777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCC
Q 046930 128 IALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
..|...|+.+.|..-|+.+-+.|
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhC
Confidence 78888999999999999988765
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.004 Score=62.83 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK-IGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
+|..+++..-+.+..+.|..+|.++.+.. +.+..+|...+..-.. .++.+.|..+|+.+++. ++.+...|...+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 34444444555555555556665555332 3344455555555333 33444456666555554 244555555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 128 IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP-DTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
..+...++.+.|..+|++.+.. +. ... ....|...+..=.+.|+.+.+..+..++.+
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~------------------~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LP------------------KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SS------------------CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cC------------------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555542 00 001 123455555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00037 Score=43.76 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 046930 658 TYNTVIHSLCRQGCFVEAFRLFDSLERIDMV 688 (965)
Q Consensus 658 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 688 (965)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.1 Score=55.45 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHH
Q 046930 634 EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKL 713 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 713 (965)
+|-.+-++++-.++... +..+...+...+.+...+.-|.++|.+|-. ...+++.....+++.+|..+
T Consensus 729 ~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFal 795 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFAL 795 (1081)
T ss_pred ccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhh
Confidence 34444444444433322 444555555555566666777777766532 23455566677777777777
Q ss_pred HHHHHHCCCCCChhh-----------HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 046930 714 FDRMVLKGFKPSTRI-----------YNSFIDGYCKFGQLEEAFKFLHDLKIN 755 (965)
Q Consensus 714 ~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 755 (965)
-++.-+ +.||+.. +.---.+|.++|+-.||..+++++...
T Consensus 796 Ae~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 796 AEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 666544 2344321 122234566677777777777776543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.012 Score=60.98 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=96.0
Q ss_pred CchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhc---------CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 046930 26 DPEKALLVLKDCLRNHGTLPS-SFTFCSLVYSFCSQ---------GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC 95 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (965)
+.+.|+.+|.+++..+...|+ ...|..++.++... ....+|.+.-+++++.+ |.|+.+...++.+..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld---~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT---TVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Confidence 345788899999955544444 44555555444322 34567888889999999 899999999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 96 KIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
-.|+++.|..+|+++...+ |....+|...+..+.-.|+.++|.+.+++..+..
T Consensus 350 ~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred hhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 9999999999999999976 6667788888888888999999999999988764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.079 Score=49.83 Aligned_cols=137 Identities=11% Similarity=0.067 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh-----hHHH
Q 046930 622 VDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEV-----SYAT 696 (965)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~ 696 (965)
...+.++..+.-.|.+.-....+.++++...+.++.....|++.-.+.|+.+.|..+|+...+..-..|.. ....
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 33456666666677777888888888887666677777888888888888888888888766532223322 2333
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh
Q 046930 697 LIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDK 761 (965)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 761 (965)
....|.-++++.+|...|.+++..+ +.|+...|+-+-++.-.|+..+|++..+.|... .|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCcc
Confidence 3445666778888888888887753 446666677777777778888888888888764 4543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0041 Score=62.55 Aligned_cols=131 Identities=15% Similarity=0.043 Sum_probs=99.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC----CCC--------CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDEN----VKY--------PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKP 118 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 118 (965)
.--++.|.+.|+|..|...|++++..= ... .....++..++-++.+.++|..|++..++++..+ ++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~ 289 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PN 289 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CC
Confidence 345667889999999999999865521 000 1123467889999999999999999999999988 89
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHH
Q 046930 119 NVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIE-KAVGI 197 (965)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~ 197 (965)
|+.+.+.-++++...|+++.|+..|+++++..| .|-.+-+.|+..-.+...+. ...++
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P---------------------~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEP---------------------SNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998632 23444455555544444443 44778
Q ss_pred HHHHHHC
Q 046930 198 LNKMIED 204 (965)
Q Consensus 198 ~~~~~~~ 204 (965)
|..|...
T Consensus 349 y~~mF~k 355 (397)
T KOG0543|consen 349 YANMFAK 355 (397)
T ss_pred HHHHhhc
Confidence 8888654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.1 Score=49.12 Aligned_cols=139 Identities=13% Similarity=0.136 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
.+.+.+++++.-.|.|.-.+..+.+.++.+ .+.++.....+++.-.+.|+.+.|...|+++.+..-..|
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~---------- 246 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD---------- 246 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh----------
Confidence 456778888888899999999999999866 456777888999999999999999999998775422111
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
++.-+..+.-.....|.-++++..|...|.+.+..+.. |+..-|.-.-++.-.|+..+|++.++.|...-
T Consensus 247 -----~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 247 -----GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred -----ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 12222222333334466678899999999988887654 66666766666667789999999999998763
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.2 Score=47.75 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.|..-+..- .+.|++++|...|+.+....+..| ...+...++.++.+.+++++|+..+++.+...+++|.-..++...
T Consensus 36 ~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 444455554 699999999999999887775533 455677788899999999999999999999998877777777777
Q ss_pred HHHHHh
Q 046930 91 VSGFCK 96 (965)
Q Consensus 91 ~~~~~~ 96 (965)
+.++..
T Consensus 115 gLs~~~ 120 (254)
T COG4105 115 GLSYFF 120 (254)
T ss_pred HHHHhc
Confidence 776443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.35 Score=49.71 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=83.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCchHH------HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 56 SFCSQGNMSRAVEVLELMSDENVKYPFDNFV------CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
.+-+++++.+|.++|.++.+.. ..++.. .+.++++|.. .+.+..........+.. +.....-...+-.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~---~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK---ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--GKSAYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh---hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--CCchHHHHHHHHH
Confidence 4567788888888888887765 222222 2345555543 45555555555444433 3333322233333
Q ss_pred HHhcCChhHHHHHHHHHHHC--CCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 046930 130 LCMLGRVNEVNELFVRMESE--GLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL- 206 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 206 (965)
..+.+.+++|.+.+..-... +-.|. |+.-. -...-+|...-+..+..+...|++.++..+++++...-.
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~------~Ld~n--i~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk 160 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESP------WLDTN--IQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK 160 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccc------hhhhh--HHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 56788888888877665543 11000 00000 000012333345666777888999999888888876422
Q ss_pred ---CCCHHHHHHHHHHHHh
Q 046930 207 ---RPNLITYTAIIFGFCK 222 (965)
Q Consensus 207 ---~~~~~~~~~l~~~~~~ 222 (965)
.-+..+|+.++-.+++
T Consensus 161 rE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 161 RECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hhhcccHHHHHHHHHHHhH
Confidence 2467777776655544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.028 Score=51.02 Aligned_cols=165 Identities=18% Similarity=0.101 Sum_probs=102.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
|..+.+++.++--+...|+++.|.+.|+...+.+ |....+....+-.+..-|++..|.+-|.+.-..++..|-...|
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC---CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 4456778888877888899999999999999988 6666777777777888899999999888888776222222344
Q ss_pred HHHHHHHHhcCChhHHHH-HHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046930 124 TSLVIALCMLGRVNEVNE-LFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMI 202 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 202 (965)
..+.. +.-+..+|.. +.++..+ .|...|-..|..|.- |+.. ...+++++.
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~~------------------------~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~ 223 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAEK------------------------SDKEQWGWNIVEFYL-GKIS-EETLMERLK 223 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHHh------------------------ccHhhhhHHHHHHHH-hhcc-HHHHHHHHH
Confidence 43332 2345556654 3444443 344444433333321 1111 122223332
Q ss_pred HCCCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 203 EDRLR------PNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 203 ~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
...-. .-..||--+..-+...|+.++|..+|+-.+..+
T Consensus 224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 21100 013567778888888888888888888887765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0016 Score=50.09 Aligned_cols=54 Identities=30% Similarity=0.292 Sum_probs=39.7
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 769 NGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
..|.+.+++++|++++++++. +.|+... +..++.++...|++++|...++++++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456677788888888887755 5665544 66677777788888888888888776
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.19 Score=45.95 Aligned_cols=186 Identities=17% Similarity=0.091 Sum_probs=104.9
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC
Q 046930 56 SFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR 135 (965)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (965)
.|-..|-+.-|.--|.+.+... |.-+.+++-++-.+...|+++.|.+.|+...+.+ |....+..+-+-++.-.|+
T Consensus 74 lYDSlGL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCc
Confidence 3444556666666677777776 6677777878777778888888888888877765 4444555555555556677
Q ss_pred hhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHH
Q 046930 136 VNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGIL-NKMIEDRLRPNLITYT 214 (965)
Q Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~ 214 (965)
+.-|.+-+.+.-+.++ -.|-...|..+.. +.-++.+|..-+ ++..+. |..-|.
T Consensus 149 ~~LAq~d~~~fYQ~D~-------------------~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG 202 (297)
T COG4785 149 YKLAQDDLLAFYQDDP-------------------NDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWG 202 (297)
T ss_pred hHhhHHHHHHHHhcCC-------------------CChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhh
Confidence 7777776666655432 1233344444332 233455554433 333332 334444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046930 215 AIIFGFCKKGKLEEAFTVFKKVEDLGLVAD-------EFVYATLIDGVCRRGDLDCAFRLLEDMEKKG 275 (965)
Q Consensus 215 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 275 (965)
..|..+.- |+..+ ..+++++.... ..+ +.||.-+...+...|+.++|..+|+-....+
T Consensus 203 ~~iV~~yL-gkiS~-e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 203 WNIVEFYL-GKISE-ETLMERLKADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHH-hhccH-HHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 33322222 22211 12233333221 111 3466667777777888888888888877653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.045 Score=50.84 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=83.8
Q ss_pred cccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCC----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh----
Q 046930 4 TSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGT----LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSD---- 75 (965)
Q Consensus 4 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 75 (965)
+++.-..+.|..-..+| ....+|++|-..+.++.+..-. -+-...+...+-..-....|.++..+|+++..
T Consensus 25 ad~dgaas~yekAAvaf-RnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAF-RNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred CCchhhHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34445566888888887 8889999999998888853211 11233455555555566778888888887654
Q ss_pred cCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCC---HhhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 76 ENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGAL-KPN---VVSYTSLVIALCMLGRVNEVNELFVRM 146 (965)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~ 146 (965)
.+. |.....-...+.-...+-++++|+++|++....-.. ..+ ...+....+.+.+..++.+|-..+.+-
T Consensus 104 ~Gs--pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 104 CGS--PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred hCC--cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 232 333333333334455667788888888877643100 111 224445556666777777666655443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00075 Score=52.78 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=43.2
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CC---CC-HhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGA-LK---PN-VVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
|....+++.++.+|...|++++|+..|+++++... .+ |+ ..++..++.++...|++++|++.+++..+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34456677777777777777777777777764310 11 11 33566777777777777777777777654
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0061 Score=63.77 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 046930 172 KPDTVSYTILLDGFSKEGTIEKAVGILNKMIED--RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYA 249 (965)
Q Consensus 172 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 249 (965)
+.+......+++.+....+++.+..++-+.... ....-..|.+++++.|...|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 456667777888888888899999999998875 222234566799999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046930 250 TLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKV 293 (965)
Q Consensus 250 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 293 (965)
.|++.+.+.|++..|.++..+|...+.-.+..++...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998776665666666555556554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.12 Score=51.09 Aligned_cols=200 Identities=16% Similarity=0.072 Sum_probs=120.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC---cc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCC-C-HhhH-
Q 046930 625 STIVAALCREGYVNKALDLCAFAKNKGI---TV--NIVTYNTVIHSLCRQGCFVEAFRLFDSLERI--DMVP-S-EVSY- 694 (965)
Q Consensus 625 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~-~-~~~~- 694 (965)
-.+..++.-.+.++++++.|+.+.+.-. .| ....+..|...|.+..++++|+-+..++... .+.. | ...|
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3456666667778888888887664311 11 2246788899999999999998887766542 1221 1 2222
Q ss_pred ----HHHHHHHHccCChHHHHHHHHHHHH----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-C
Q 046930 695 ----ATLIYNLCKEGQLLDAKKLFDRMVL----KGFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKIN----CLEP-D 760 (965)
Q Consensus 695 ----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~ 760 (965)
.-|.-++...|++-.|.+..++..+ .|-.+ -......++++|...|+.+.|+.-|+++... |-+- .
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq 285 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ 285 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH
Confidence 2344567888999999999888765 34232 2445578899999999999999888775432 2111 1
Q ss_pred hhHHHHHHHHHHhcCCH-----HHHHHHHHHhHhC----CCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 761 KFTVSAVINGFCQKGDM-----EGALGFFLDFNTK----GVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 761 ~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~----~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
..+...++..+....-. =+|+++-+++++. |.+-..-- ...++..|...|.-++=...+..+-+
T Consensus 286 v~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 286 VEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 22334444444322222 2366666666542 32222222 33466677678877776666666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0016 Score=50.88 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=46.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDE----NVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 112 (965)
..++..++.+|...|++++|+..|+++++. +...|....++..++.++...|++++|++.|+++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345677777788888888888888877653 111122356778888888888888888888888775
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.49 Score=48.45 Aligned_cols=137 Identities=18% Similarity=0.275 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhH-HHHH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKG-ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSY-ATLI 698 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 698 (965)
..+|...+....+..-++.|..+|-++.+.+ +.+++..+++++..++ +|+..-|..+|+--+..- ||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 4555666666666666777777777777776 5556667777776554 467777777777655532 443332 3334
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhH
Q 046930 699 YNLCKEGQLLDAKKLFDRMVLKGFKPS--TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFT 763 (965)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 763 (965)
..+..-++-..|..+|+..+.. +..+ ..+|..+++--..-|++..+..+=+++.+ +-|...+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~ 537 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENL 537 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhH
Confidence 4455667777777777765543 2222 45666666666666777777766666665 3454433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.012 Score=61.65 Aligned_cols=111 Identities=13% Similarity=0.107 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHH
Q 046930 654 VNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI--DMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNS 731 (965)
Q Consensus 654 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 731 (965)
.+......+++.+....+.+++..++-+.... ....-..|..+++..|.+.|..++++++++.=+..|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555555555555555566666666555542 1112233445666666666666666666666555666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHH
Q 046930 732 FIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTV 764 (965)
Q Consensus 732 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 764 (965)
|++.+.+.|++..|.+++..|...+...+..|+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~ 176 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQ 176 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence 666666666666666666555544333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.45 Score=47.47 Aligned_cols=226 Identities=20% Similarity=0.160 Sum_probs=128.3
Q ss_pred CCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh--cCCCCCCchHHHHHHHHHHHhcCChhh
Q 046930 25 NDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSD--ENVKYPFDNFVCSSVVSGFCKIGKPEL 102 (965)
Q Consensus 25 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~ 102 (965)
+.+..+...+...+..................+...+++..+...+..... .. +.....+...+..+...+++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL---PNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc---cchHHHHHHHHHHHHHHhhHHH
Confidence 444555555555544321111245566666667777777777777777765 23 5566677777777777777777
Q ss_pred HHHHHHHHHHcCCCCCCHhhHHHHHH-HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH
Q 046930 103 AIGFFENAISLGALKPNVVSYTSLVI-ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL 181 (965)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 181 (965)
+...+....... +.+......... ++...|++++|...+.++....+. .......+...
T Consensus 114 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~~~~ 173 (291)
T COG0457 114 ALELLEKALALD--PDPDLAEALLALGALYELGDYEEALELYEKALELDPE------------------LNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHcCC--CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------ccchHHHHHHh
Confidence 777777777643 112222222333 567777777777777776542110 00122333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 046930 182 LDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDL 261 (965)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 261 (965)
...+...++.+.+...+..+...........+..+...+...++++.+...+......... ....+..+...+...+..
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRY 252 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCH
Confidence 3345566777777777777766522212455566666666667777777777776665311 123333333333355566
Q ss_pred hHHHHHHHHHHHC
Q 046930 262 DCAFRLLEDMEKK 274 (965)
Q Consensus 262 ~~A~~~~~~~~~~ 274 (965)
+.+...+.+....
T Consensus 253 ~~~~~~~~~~~~~ 265 (291)
T COG0457 253 EEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0073 Score=62.46 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=45.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH---HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF---VCSSVVSGFCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (965)
++..+..++.+|...|++++|+..|+++++.+ |.+.. +|+.++.+|...|++++|++.|+++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45567777777777777777777777777776 45553 3777777777777777777777777763
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.013 Score=47.25 Aligned_cols=68 Identities=16% Similarity=0.374 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcC--------CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 224 GKLEEAFTVFKKVEDLGL-VADEFVYATLIDGVCRRG--------DLDCAFRLLEDMEKKGIKPSIVTYNTIINGLC 291 (965)
Q Consensus 224 g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 291 (965)
+++...-.+|+.+.+.|+ .|+..+|+.++.+.++.. ++-..+.+|.+|+..++.|+..+|+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 444444444444333311 12334455555555555666666665555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0011 Score=40.49 Aligned_cols=26 Identities=38% Similarity=0.862 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHh
Q 046930 659 YNTVIHSLCRQGCFVEAFRLFDSLER 684 (965)
Q Consensus 659 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 684 (965)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.51 Score=47.05 Aligned_cols=200 Identities=21% Similarity=0.183 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNK-GITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIY 699 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 699 (965)
...+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 466677778888888999998888887752 234456677778888888888999999999888754333 122222233
Q ss_pred -HHHccCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhc
Q 046930 700 -NLCKEGQLLDAKKLFDRMVLKGF--KPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD--KFTVSAVINGFCQK 774 (965)
Q Consensus 700 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~ 774 (965)
.+...|+++.|...+.+...... ......+......+...++.++|...+.++... .++ ...+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 68899999999999999866311 123444555555577889999999999999874 444 56788888888899
Q ss_pred CCHHHHHHHHHHhHhCCCCCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 775 GDMEGALGFFLDFNTKGVSPD-FLGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
+++++|...+..... ..|+ ...+..++..+...|.++++...+.+.++.
T Consensus 216 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999865 5555 344666777777778899999999999884
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0012 Score=40.33 Aligned_cols=29 Identities=31% Similarity=0.653 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 177 SYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 177 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.016 Score=46.76 Aligned_cols=80 Identities=11% Similarity=0.230 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHhHH
Q 046930 178 YTILLDGFSKEGTIEKAVGILNKMIEDRL-RPNLITYTAIIFGFCKKG--------KLEEAFTVFKKVEDLGLVADEFVY 248 (965)
Q Consensus 178 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~ 248 (965)
-...|.-+...+++.....+|..+.+.|+ -|+..+|+.++.+..++. +.-..+.+|+.|...++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667778999999999999999999 899999999999887764 345678999999999999999999
Q ss_pred HHHHHHHHh
Q 046930 249 ATLIDGVCR 257 (965)
Q Consensus 249 ~~l~~~~~~ 257 (965)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.1 Score=48.59 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhhhcHHHHHHHHHhhhh
Q 046930 554 PMISKFLVQYLCLNDVTNALLFIKNMKE 581 (965)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 581 (965)
..+.+....|...+++++|...+.+..+
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3445566667777777777766665543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0052 Score=63.50 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=60.6
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV---VSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
|.++.+++.++.+|...|++++|+..|+++++.+ |.+. .+|++++.+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999976 4444 35999999999999999999999999874
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.075 Score=55.37 Aligned_cols=146 Identities=11% Similarity=0.115 Sum_probs=106.7
Q ss_pred ChhHHHHHHHHHH---hcCCCCCCchHHHHHHHHHHHhc---------CChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 62 NMSRAVEVLELMS---DENVKYPFDNFVCSSVVSGFCKI---------GKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 62 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
....|..+|.+++ +.+ |....+|..++.++... ....+|.+.-+++++.+ +.|+.+...++.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ld---p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~ 347 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ---TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLI 347 (458)
T ss_pred HHHHHHHHHHHHhhcccCC---cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 4568899999999 666 77788887777665542 23457888999999988 7888999999998
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
+...++++.|..+|+++...+ || ..+|........-.|+.++|.+.+++.++..+..
T Consensus 348 ~~~~~~~~~a~~~f~rA~~L~----------------------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 348 TGLSGQAKVSHILFEQAKIHS----------------------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHhhcchhhHHHHHHHHhhcC----------------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 888999999999999998864 44 5555555555667999999999999988764332
Q ss_pred CHHH-HHHHHHHHHhcCChHHHHHHHHH
Q 046930 209 NLIT-YTAIIFGFCKKGKLEEAFTVFKK 235 (965)
Q Consensus 209 ~~~~-~~~l~~~~~~~g~~~~A~~~~~~ 235 (965)
-... ....+..|+.. ..+.|+++|-+
T Consensus 406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 406 RKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred hHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 2222 22333455554 47777777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.051 Score=57.65 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCC--HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHc
Q 046930 249 ATLIDGVCRRGD--LDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSK 304 (965)
Q Consensus 249 ~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 304 (965)
+..-.+|.+..+ +-+-..-++++.++|-.|+... +...++-.|++.+|.++|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH
Confidence 333445554444 3334445677778887777643 3455666788888888776
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.038 Score=54.39 Aligned_cols=231 Identities=14% Similarity=0.100 Sum_probs=137.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHc
Q 046930 631 LCREGYVNKALDLCAFAKNKG--ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI--DMVPS---EVSYATLIYNLCK 703 (965)
Q Consensus 631 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 703 (965)
+....+.++|+..+.+.+.+- ...-..++..+..+.+..|.+++++..--.-+.. ..... -..|..|..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777776665541 0011235556667777778777765543222211 01111 2345566666666
Q ss_pred cCChHHHHHHHHHHHHC-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CC--ChhHHHHHHHHHHhc
Q 046930 704 EGQLLDAKKLFDRMVLK-GFKPS---TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCL---EP--DKFTVSAVINGFCQK 774 (965)
Q Consensus 704 ~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~l~~~~~~~ 774 (965)
.-++.+++.+-+.-... |..|. -.....++.++...+.++++++.|+.+.+..- .| ...++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66677777766665543 33331 12234566777777788888888888765421 11 225677888888888
Q ss_pred CCHHHHHHHHHHhHh----CCCCCCh-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc-ccccH
Q 046930 775 GDMEGALGFFLDFNT----KGVSPDF-----LGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV-ESESV 844 (965)
Q Consensus 775 g~~~~A~~~~~~~~~----~~~~p~~-----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 844 (965)
.++++|+-+..++.+ .++..-+ ...+.++.++...|++-.|.+.-+++.+.- -..|..+ -...+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla------l~~Gdra~~arc~ 249 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA------LQHGDRALQARCL 249 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH------HHhCChHHHHHHH
Confidence 888888877776644 2222211 235567778888888888888888776521 1112222 22356
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHH
Q 046930 845 LNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 845 ~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
..++..|...|+.|.|..-|++.
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHH
Confidence 66777888888888888888763
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.36 Score=49.74 Aligned_cols=167 Identities=13% Similarity=-0.039 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CcccHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhCCCCCCHhhH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKG---ITVNIVTYNTVIHSLCR---QGCFVEAFRLFDSLERIDMVPSEVSY 694 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~ 694 (965)
+.+...++-.|-...+++.-+++++.+...- +..+...-...+.++-+ .|+.++|++++..+....-.+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3334455556777778888888888776641 11111222234445555 77888888888775554445666777
Q ss_pred HHHHHHHH----c-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH----HHHHH----HHhhhCCC
Q 046930 695 ATLIYNLC----K-----EGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEE----AFKFL----HDLKINCL 757 (965)
Q Consensus 695 ~~l~~~~~----~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~----~~~~~~~~ 757 (965)
..++..|- . ....++|++.|.+.-+. .|+...-.+++..+.-.|...+ ..++- ..+.+.|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 76665542 1 22467777777776653 4555554555555555554222 22222 11112232
Q ss_pred CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 758 EP---DKFTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 758 ~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
.. +..-+.+++.+..-.|++++|++.+++|..
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 22 334445667777778888888888888865
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.25 Score=48.03 Aligned_cols=149 Identities=13% Similarity=0.075 Sum_probs=95.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH---H
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT---S 125 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~ 125 (965)
....-+......|++.+|...|..+.+.. |.+..+...++.+|...|+.+.|..++..+.... ....+. .
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----~~~~~~~l~a 208 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA----QDKAAHGLQA 208 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----hhhHHHHHHH
Confidence 33444455778889999999999888888 6778888889999999999999988888764322 111222 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED- 204 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 204 (965)
-+..+.+.....+...+-+++-.. +.|...-..+...+...|+.+.|.+.+-.++++
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aad----------------------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAAD----------------------PDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344455555555555444444331 125666667777777788888887777666654
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChH
Q 046930 205 -RLRPNLITYTAIIFGFCKKGKLE 227 (965)
Q Consensus 205 -~~~~~~~~~~~l~~~~~~~g~~~ 227 (965)
+.. |...-..++..+.--|.-+
T Consensus 267 ~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 267 RGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred cccc-CcHHHHHHHHHHHhcCCCC
Confidence 222 4455556666655555333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.4 Score=49.40 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHc---cCChHHHHHHHHHHHHCCCCCChhhHH
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERID---MVPSEVSYATLIYNLCK---EGQLLDAKKLFDRMVLKGFKPSTRIYN 730 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 730 (965)
.+...++-+|....+++.-+++.+.+...- +......--..+.++-+ .|+.++|++++..++...-.+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344566677999999999999999998741 11122333345566667 899999999999976665577888988
Q ss_pred HHHHHHHhc---------CCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCH-H---HHHHHH---HHh-HhCCC-
Q 046930 731 SFIDGYCKF---------GQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDM-E---GALGFF---LDF-NTKGV- 792 (965)
Q Consensus 731 ~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~---~A~~~~---~~~-~~~~~- 792 (965)
.++.+|-.. ...++|+..|.+.-+. .||..+--+++..+...|.. + +..++- ..+ .+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 888877431 2478999999998774 57654433333344344432 2 222222 121 12332
Q ss_pred C--CChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 793 S--PDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 793 ~--p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
. .+.-.+.+++.+..-.|++++|.+.++++..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 2 2333466788888889999999999999987
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.048 Score=49.01 Aligned_cols=69 Identities=17% Similarity=0.327 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHh-----CCCCCChHH
Q 046930 728 IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNT-----KGVSPDFLG 798 (965)
Q Consensus 728 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 798 (965)
+...++..+...|++++|+..++++... .| |...|..++.+|...|+..+|++.|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4567777888899999999999999884 66 678899999999999999999999998754 488888766
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.027 Score=50.46 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=73.8
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPS---SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG 98 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 98 (965)
-.+|+|+.|..-|..++..-+-.+. +..|..-+.++.+.++|+.|+.-..++++.+ |....++...+.+|-+..
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---chhHHHHHHHHHHHHhhh
Confidence 4789999999999998875432222 3356677788889999999999999999998 777788888899999999
Q ss_pred ChhhHHHHHHHHHHcC
Q 046930 99 KPELAIGFFENAISLG 114 (965)
Q Consensus 99 ~~~~A~~~~~~~~~~~ 114 (965)
++++|++-|.+++..+
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999865
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.63 E-value=1.3 Score=47.61 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=118.6
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATL 697 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 697 (965)
+++...|..-+.--.+.|+.+...-+|+...--. ..=...|-..+.-....|+.+-|..++....+.-.+..+.+-..-
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 3456677888888889999999999998876421 112235666666666779999999888887775433333332222
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHH---HHHHHhhhCCCCCChh--HHHHHHHH-
Q 046930 698 IYNLCKEGQLLDAKKLFDRMVLKGFKPST-RIYNSFIDGYCKFGQLEEAF---KFLHDLKINCLEPDKF--TVSAVING- 770 (965)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~--~~~~l~~~- 770 (965)
....-..|+++.|..+++.+.+. + |+. ..-..-+....+.|+.+.+. .++.........+... .+......
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 23355678999999999999986 4 543 33344456677888888888 4444443321222211 11111111
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCC
Q 046930 771 FCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKG 810 (965)
Q Consensus 771 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g 810 (965)
+.-.++.+.|..++.++.+ +.|+..+ |..++....-.+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 2345788999999999854 6776655 666776665443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0056 Score=41.00 Aligned_cols=41 Identities=15% Similarity=0.352 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
.++..++..|...|++++|++.|+++++.. |.|+..|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHhh
Confidence 345555555666666666666666655554 44444554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.061 Score=44.44 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=78.0
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHhcCCh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV-KYPFDNFVCSSVVSGFCKIGKP 100 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 100 (965)
...|+.+.|++.|..++... |..+.+|+.-++++--+|+.++|+.-++++++... .......++...+..|...|+-
T Consensus 54 aE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 68899999999999999855 56788999999999999999999999999998753 1122345677888899999999
Q ss_pred hhHHHHHHHHHHcC
Q 046930 101 ELAIGFFENAISLG 114 (965)
Q Consensus 101 ~~A~~~~~~~~~~~ 114 (965)
+.|..-|+.+-+.+
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99999999999876
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0059 Score=40.89 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
.++..++..|...|++++|+++|+++++.+ |.++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~---P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD---PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCCHHHHHHhhh
Confidence 456778888888999999999999988888 788888877764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.2 Score=51.78 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHccCChHHH
Q 046930 635 GYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEV----SYATLIYNLCKEGQLLDA 710 (965)
Q Consensus 635 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A 710 (965)
++++.|+..+..+- ...|.-.++.-.+.|-+.+|+.++. |+.. .|.+..+-+...+.+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 66777776665543 2233444455556777777777663 4433 344444555667777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhH--HHHHHHHHHhcCCHHHHHHHHHHhH
Q 046930 711 KKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFT--VSAVINGFCQKGDMEGALGFFLDFN 788 (965)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (965)
.-+|+..=+. .--+.+|..+|++++|..+..++.. .-|... -..|+.-+...++.-+|-++..+..
T Consensus 959 al~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 7777765321 1234567778888888887777642 223322 2566777778888888888877753
Q ss_pred hCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 046930 789 TKGVSPDFLGFLYLVKGLCTKGRMEEARSILREML 823 (965)
Q Consensus 789 ~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 823 (965)
+ .|.. -+..|++.-.|++|+.+.....
T Consensus 1027 s---d~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1027 S---DPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred c---CHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 2 3332 2334677778888877665443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.9 Score=47.54 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHH
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGF 771 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 771 (965)
.+.+--+.-+..-|+..+|.++-++.. -||...|..-+.+++..+++++-+++-+... .+.-|.-...+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344444555667888888988877764 5788888888999999999988666555442 255667778889
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 046930 772 CQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREM 822 (965)
Q Consensus 772 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 822 (965)
.+.|+.++|.+++-+. .|+. -.+.+|.+.|++.+|.+..-+-
T Consensus 755 ~~~~n~~EA~KYiprv--~~l~-------ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV--GGLQ-------EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HhcccHHHHhhhhhcc--CChH-------HHHHHHHHhccHHHHHHHHHHh
Confidence 9999999999998775 2322 4777889999999998765443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.1 Score=50.91 Aligned_cols=152 Identities=13% Similarity=0.042 Sum_probs=100.7
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHH
Q 046930 668 RQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPST----RIYNSFIDGYCKFGQLE 743 (965)
Q Consensus 668 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 743 (965)
..|++.+|...++++++. ++.|...+..-=++|...|+.+.-...+++++-. ..++. ..-..++-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467777888888887764 4556666666667788888888888888887754 23333 22234455667788888
Q ss_pred HHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---hHHHHHHHHHHhcCCCHHHHHHHH
Q 046930 744 EAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPD---FLGFLYLVKGLCTKGRMEEARSIL 819 (965)
Q Consensus 744 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~eA~~~~ 819 (965)
+|++..++..+. .| |..+..+....+...|++.++.++..+-.+.=-..+ ...|-..+-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 888888888774 44 566667777778888888888887765422100111 112444555566678888888888
Q ss_pred HHHH
Q 046930 820 REML 823 (965)
Q Consensus 820 ~~~~ 823 (965)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7644
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.099 Score=48.28 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 172 KPDTVSYTILLDGFSK-----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFC 221 (965)
Q Consensus 172 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (965)
..+-.+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.|+.++=
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 3566677777777654 4666667777777777777778888887776653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.5 Score=45.08 Aligned_cols=135 Identities=18% Similarity=0.181 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERID-MVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDG 735 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 735 (965)
..|...+++..+..-++.|..+|-++.+.+ +.++..++++++.-+ ..|+..-|..+|+--+.. ++.+....+-...-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 455666666666777888888888888876 556777788877744 567778888888866554 23333333455556
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh
Q 046930 736 YCKFGQLEEAFKFLHDLKINCLEPD--KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF 796 (965)
Q Consensus 736 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (965)
+...|+-+.|..+|++.... +..+ ..+|..++.-=..-|+...+..+-+++.+ +.|-.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQe 535 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQE 535 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcH
Confidence 67778888888888866543 2223 34666676655666777777777776644 45543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.16 Score=55.60 Aligned_cols=166 Identities=20% Similarity=0.111 Sum_probs=114.6
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHH-----hHHHHHHHHH----hcCChhHHHHHHHHHHhcCCCCCCc
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSF-----TFCSLVYSFC----SQGNMSRAVEVLELMSDENVKYPFD 83 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (965)
...++... ...||=+.+++.+..+.+..++...-. .|...+..+. .....+.|.++++.+.+.. |..
T Consensus 191 ~~kll~~v-GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s 266 (468)
T PF10300_consen 191 VLKLLSFV-GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNS 266 (468)
T ss_pred HHHHHhhc-CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCc
Confidence 34444544 678999999999999887555432211 2333333332 2457788999999999988 788
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhH
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKP--NVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCW 161 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (965)
...+...++.+...|+.++|++.|+++.....--+ ....+..++-.+....+|++|...|.++.+..-
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~---------- 336 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK---------- 336 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc----------
Confidence 88888999999999999999999998874220111 223566777888999999999999999987521
Q ss_pred HhhhhhhcCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 046930 162 ICGQMVDKGIKPDTVSYTILLD-GFSKEGTI-------EKAVGILNKMIE 203 (965)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~ 203 (965)
=+...|..+.. ++...|+. ++|.++|.++..
T Consensus 337 -----------WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 337 -----------WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred -----------cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 12333443333 34456776 777777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.047 Score=49.05 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.++..++..+...|++++|+...++++..+ |-+...|..++.+|...|+..+|...|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467778888899999999999999999987 67788999999999999999999999998875
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0061 Score=38.07 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=26.0
Q ss_pred hhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 934 CYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 934 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
.+.++..|.+.|++++|++.|+++++..|+|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4455555999999999999999999999987
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.18 E-value=2.8 Score=46.40 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=88.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHH
Q 046930 723 KPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYL 802 (965)
Q Consensus 723 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 802 (965)
.-...+.+--+.-+...|+..+|.++-++.. -||-..|+.-+.++...+++++-.++-+.. ++ +..|...
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk-----ks-PIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK-----KS-PIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc-----CC-CCCchhH
Confidence 3334455555566778899999999888875 688888888889999999999988876654 21 3457778
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHH
Q 046930 803 VKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDE 866 (965)
Q Consensus 803 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 866 (965)
..+|.+.|+.+||.+++-++.. +.....+|.+.|.+.+|.++.-+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~-------------------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG-------------------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC-------------------hHHHHHHHHHhccHHHHHHHHHH
Confidence 8899999999999999866543 11566778889999999998654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.14 E-value=3 Score=46.77 Aligned_cols=176 Identities=15% Similarity=0.094 Sum_probs=107.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 046930 179 TILLDGFSKEGTIEKAVGILNKMIEDRLRPN--LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVC 256 (965)
Q Consensus 179 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (965)
..-+....+..-++-|..+-.. .+..++ .......+.-+.+.|++++|...|-+-+..- .| ..++.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhc
Confidence 3455566677777777765433 222222 1222333455678899999999988776431 22 23445556
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHH--HHHHHHHhhhcCChhHHHHHHH
Q 046930 257 RRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVT--YSTLLHGYIEEDNVNGILETKQ 334 (965)
Q Consensus 257 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 334 (965)
....+..-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.+..+..+..... .-..+..+.+.+-.+.|..+-.
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 666777778888898888876 5666778899999999999888877666522221 2233344444444454444333
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 046930 335 RLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMP 372 (965)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (965)
... ........+ +-..+++++|++.++.+.
T Consensus 488 k~~-----~he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 488 KFK-----KHEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred Hhc-----cCHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 322 122333333 345688999999988764
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.8 Score=43.75 Aligned_cols=126 Identities=15% Similarity=0.017 Sum_probs=78.0
Q ss_pred HccCCchHHHHHHHHHHHhC-CCCCC-----HHhHHHHHHHHHhcC-ChhHHHHHHHHHHhc----C---CCCCC----c
Q 046930 22 IKRNDPEKALLVLKDCLRNH-GTLPS-----SFTFCSLVYSFCSQG-NMSRAVEVLELMSDE----N---VKYPF----D 83 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~---~~~~~----~ 83 (965)
.++|+++.|...+.++-... ...|+ ...+...+......+ +++.|..+++++.+. . ...|. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 67899999999999965544 22333 123444555556667 888888888876654 1 11111 1
Q ss_pred hHHHHHHHHHHHhcCChh---hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 84 NFVCSSVVSGFCKIGKPE---LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
..++..++.+|...+.++ +|....+.+.... +..+..+..-+.++.+.++.+++.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234566677777766654 4555555554433 334556656666676778888888888888763
|
It is also involved in sporulation []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.07 Score=49.24 Aligned_cols=87 Identities=26% Similarity=0.447 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc----------------CCHhHHHH
Q 046930 208 PNLITYTAIIFGFCKK-----GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR----------------GDLDCAFR 266 (965)
Q Consensus 208 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~~ 266 (965)
.+..+|..++..+.+. |..+-....++.|.+.|+..|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3778888888877644 67788888899999999999999999999986431 23567999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 046930 267 LLEDMEKKGIKPSIVTYNTIINGLCKVG 294 (965)
Q Consensus 267 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g 294 (965)
++++|...|+-||..++..++..+.+.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 9999999999999999999999986544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.27 Score=53.73 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCH-----hhHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCCChhhH
Q 046930 660 NTVIHSLCRQGCFVEAFRLFDSLERID-MVPSE-----VSYATLIYNLC----KEGQLLDAKKLFDRMVLKGFKPSTRIY 729 (965)
Q Consensus 660 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~ 729 (965)
..++....=.||-+.+++.+.+..+.+ +.-.. ..|...+..+. .....+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 335555555677777777777665521 11111 11222222222 355778899999999885 4555444
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHH-HHH
Q 046930 730 -NSFIDGYCKFGQLEEAFKFLHDLKINC--LEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLY-LVK 804 (965)
Q Consensus 730 -~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~ 804 (965)
..-+..+...|++++|++.|+++.... .+. ....+.-++..+...++|++|.+.|.++.+.+ .-+...|.. .+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 455777888999999999999876421 111 34567778888999999999999999997632 223444444 444
Q ss_pred HHhcCCCH-------HHHHHHHHHHHh
Q 046930 805 GLCTKGRM-------EEARSILREMLQ 824 (965)
Q Consensus 805 ~~~~~g~~-------~eA~~~~~~~~~ 824 (965)
++...|+. ++|.+++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 55578888 888888887765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.3 Score=45.96 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=78.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc---CC--cc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-------CCCCCCH-
Q 046930 628 VAALCREGYVNKALDLCAFAKNK---GI--TV---NIVTYNTVIHSLCRQGCFVEAFRLFDSLER-------IDMVPSE- 691 (965)
Q Consensus 628 ~~~~~~~g~~~~A~~~~~~~~~~---~~--~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~- 691 (965)
...+.-.|++.+|.+++...--. |. .| +...||.|+-.+.+.|.+.-+..+|.++++ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 44556679999998887643211 21 11 234578888888889999988888888774 3655542
Q ss_pred ----------hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 046930 692 ----------VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKF 739 (965)
Q Consensus 692 ----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 739 (965)
.+||. .-.|...|++-.|.++|.+..+. +..++..|-.|+.+|...
T Consensus 327 ~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred eehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 22333 33477899999999999999886 677999999999988643
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=3 Score=45.12 Aligned_cols=353 Identities=12% Similarity=0.045 Sum_probs=194.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.+..++.---...+.+.+..+|+.++... |.-.-.|...+..-.+.|..+.+.++|++.+.. +|-+...|.....
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~ky---Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSKY---PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLA 121 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHH
Confidence 34444432223334466777788887776 666677888888888999999999999998873 5777778876665
Q ss_pred HHH-hcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 129 ALC-MLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGI-KPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 129 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
-+. ..|+.+.....|+++.... |. -.....|...|..-..++++.....+|++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~v-------------------G~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-- 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYV-------------------GLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-- 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhc-------------------ccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh--
Confidence 443 4567777777888877631 11 134566777777777888899999999998874
Q ss_pred CCCHHHHHHHHHH---HHhc------CChHHHHHHHHHHHHc---C-CCCCHhHHHHHHHHHHh-cCCHhHHHHHHHHHH
Q 046930 207 RPNLITYTAIIFG---FCKK------GKLEEAFTVFKKVEDL---G-LVADEFVYATLIDGVCR-RGDLDCAFRLLEDME 272 (965)
Q Consensus 207 ~~~~~~~~~l~~~---~~~~------g~~~~A~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 272 (965)
| ...++..-.- +... ...+++.++-...... . ..+....+...+.--.. .+..+.+...+.+..
T Consensus 181 -P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~ 258 (577)
T KOG1258|consen 181 -P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV 258 (577)
T ss_pred -h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH
Confidence 1 1122222111 1111 1222222222222110 0 00111111111111110 111222222222211
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCcchHHH-HHcCC----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHH
Q 046930 273 KKGIKPSIVTYNTIINGLCKVGRTSDAEE-VSKGI----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVM 347 (965)
Q Consensus 273 ~~g~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 347 (965)
.. -..+|+.-..-..+.-.++..+. -+..+ +++..+|...+......|+.+.+.-.++++.-....- ...
T Consensus 259 ~~----~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-~ef 333 (577)
T KOG1258|consen 259 SI----HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-DEF 333 (577)
T ss_pred HH----HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-HHH
Confidence 11 01111111111111111111111 01122 2356678888888889999999998888876432111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 046930 348 CNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKS 427 (965)
Q Consensus 348 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (965)
|-..+......|+.+-|..++....+..++..+.+...-....-..|+++.|..+++.+.+..|....+-..-+....+.
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 55555555566888888888877766554444443333333345577999999999999888755555555555666677
Q ss_pred CChHHHH
Q 046930 428 GMVDMAT 434 (965)
Q Consensus 428 g~~~~A~ 434 (965)
|..+.+.
T Consensus 414 ~~~~~~~ 420 (577)
T KOG1258|consen 414 GNLEDAN 420 (577)
T ss_pred cchhhhh
Confidence 7777776
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.19 Score=49.15 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=114.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH----HHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY----TSLV 127 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~l~ 127 (965)
.-+.....+|++.+|...++++++.. |.+.-++.-.=.++...|+.+.-...+++++..- .++...| ....
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~---PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDY---PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYA 182 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhC---chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHH
Confidence 33445667899999999999999887 8888999989999999999999999999998752 3454332 3444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------
Q 046930 128 IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNK------- 200 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------- 200 (965)
-.+..+|-+++|++..++..+.+ +-|.-+-..+..++--.|++.++.++..+
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN---------------------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~ 241 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQIN---------------------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ 241 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCC---------------------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh
Confidence 55678999999999999988764 35666677777888888888888877542
Q ss_pred --HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 201 --MIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 201 --~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
|+. ...-|+.. -.+...+.++.|+++|+.-+
T Consensus 242 s~mla-----sHNyWH~A-l~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 242 SWMLA-----SHNYWHTA-LFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhHHH-----hhhhHHHH-HhhhcccchhHHHHHHHHHH
Confidence 443 22223332 34566689999999997754
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0071 Score=37.52 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=20.5
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHH
Q 046930 70 LELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAI 104 (965)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 104 (965)
|+++++.+ |.++.+|+.++.+|...|++++|+
T Consensus 2 y~kAie~~---P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN---PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC---CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555666 666666666666666666666664
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.037 Score=53.90 Aligned_cols=94 Identities=18% Similarity=0.088 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
.--++-|.++|+|++|+.+|...+..+ |.++..+...+.+|++..++..|..-.+.++..+ ..-..+|...+.+-
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~---P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVY---PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQAR 175 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccC---CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHH
Confidence 334567889999999999999999988 8888999999999999999999999999998765 34455788888888
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 046930 131 CMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 131 ~~~~~~~~A~~~~~~~~~~ 149 (965)
...|+..+|.+-++.++..
T Consensus 176 ~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHhhHHHHHHhHHHHHhh
Confidence 8889999999999888875
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0076 Score=37.64 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=26.6
Q ss_pred hhhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 933 FCYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 933 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
.++.++..|...|++++|+..|+++++..|+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 35566555999999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.83 E-value=2.6 Score=43.19 Aligned_cols=109 Identities=20% Similarity=0.157 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHh
Q 046930 728 IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLC 807 (965)
Q Consensus 728 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 807 (965)
+.+..+.-+...|+...|.++..+.. -||..-|+..+.+|+..++|++-.++... .-. +..|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHHH
Confidence 44455566677888888888877663 57888899999999999999887776432 122 355888999999
Q ss_pred cCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHH
Q 046930 808 TKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDE 866 (965)
Q Consensus 808 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 866 (965)
+.|+..+|..+..++-. ..-+..|.+.|.+.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~~~--------------------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIPD--------------------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCCh--------------------HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998876321 3345556789999999888554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.29 Score=52.57 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=99.6
Q ss_pred HHHHhcCChhHHHHHHH--HHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 55 YSFCSQGNMSRAVEVLE--LMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 55 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
+...-.++++++.+... .++ ... | ......++..+.+.|.++.|+++-+ |+.. ......+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i--~--~~~~~~i~~fL~~~G~~e~AL~~~~----------D~~~---rFeLAl~ 330 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNI--P--KDQGQSIARFLEKKGYPELALQFVT----------DPDH---RFELALQ 330 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG------HHHHHHHHHHHHHTT-HHHHHHHSS-----------HHH---HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccC--C--hhHHHHHHHHHHHCCCHHHHHhhcC----------ChHH---HhHHHHh
Confidence 33456678888766665 122 111 2 4457788888888888888877643 3322 2333467
Q ss_pred cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 046930 133 LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLIT 212 (965)
Q Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (965)
+|+++.|.+..++. ++...|..|.....++|+++-|++.|.+...
T Consensus 331 lg~L~~A~~~a~~~--------------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------- 375 (443)
T PF04053_consen 331 LGNLDIALEIAKEL--------------------------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------- 375 (443)
T ss_dssp CT-HHHHHHHCCCC--------------------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------
T ss_pred cCCHHHHHHHHHhc--------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------
Confidence 88888888775332 5677899999999999999999999888642
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 213 YTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
+..|+-.|.-.|+.+.-.++.+.....| -++....++...|++++..+++.+.
T Consensus 376 ~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5566667888888888888877777665 2445555666678888887776553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.4 Score=43.03 Aligned_cols=147 Identities=16% Similarity=0.081 Sum_probs=62.6
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 046930 667 CRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAF 746 (965)
Q Consensus 667 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 746 (965)
...|++.+|...|+...... +-+......++.+|...|+.+.|..++..+-..--.........-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34455555555555554432 11133344445555555555555555555433210111111122233344444444444
Q ss_pred HHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-CChHHHHHHHHHHhcCCCHHHHHH
Q 046930 747 KFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVS-PDFLGFLYLVKGLCTKGRMEEARS 817 (965)
Q Consensus 747 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~eA~~ 817 (965)
.+-++.-. .| |...-..++..+...|+.+.|.+.+-.++..+.. -|...-..|+..+.-.|.-+.+..
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 33334333 34 3444445555555555555555555555432211 122233444444444443333333
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.11 Score=46.41 Aligned_cols=110 Identities=20% Similarity=0.176 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC----------ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 63 MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG----------KPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
|+.|.+.++.....+ |.+++.++.=+.++.... .+++|+.-|++++..+ |....++..++.+|..
T Consensus 7 FE~ark~aea~y~~n---P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~--P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN---PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN--PNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHH
Confidence 456777777767777 677777776666665542 2455677777777765 4445677777777765
Q ss_pred cCC-----------hhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046930 133 LGR-----------VNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKM 201 (965)
Q Consensus 133 ~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 201 (965)
.+. +++|...|+++... .|+...|+.-+.... +|-++..++
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~----------------------~P~ne~Y~ksLe~~~------kap~lh~e~ 133 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDE----------------------DPNNELYRKSLEMAA------KAPELHMEI 133 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-----------------------TT-HHHHHHHHHHH------THHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhc----------------------CCCcHHHHHHHHHHH------hhHHHHHHH
Confidence 432 55666667766654 688899988877663 466777777
Q ss_pred HHCC
Q 046930 202 IEDR 205 (965)
Q Consensus 202 ~~~~ 205 (965)
.+++
T Consensus 134 ~~~~ 137 (186)
T PF06552_consen 134 HKQG 137 (186)
T ss_dssp HHSS
T ss_pred HHHH
Confidence 6654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.45 Score=41.88 Aligned_cols=121 Identities=16% Similarity=0.050 Sum_probs=64.3
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHH
Q 046930 494 LCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNAL 573 (965)
Q Consensus 494 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 573 (965)
+.+.++.++|+.-|..+.+.|.. +...-+..+.+......|+..+|+
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g---------------------------------~YpvLA~mr~at~~a~kgdta~AV 114 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYG---------------------------------SYPVLARMRAATLLAQKGDTAAAV 114 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCC---------------------------------cchHHHHHHHHHHHhhcccHHHHH
Confidence 45667788888888777665522 111223456666777788888899
Q ss_pred HHHHhhhhcCccccchHHHHH-----HHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046930 574 LFIKNMKEISSTVTIPVNVLK-----KLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFA 647 (965)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 647 (965)
..|+.+-...+.+.+.-.+++ .+...|.+++...-++.+...-.|....+-.+|+.+-.+.|++..|...|..+
T Consensus 115 ~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 115 AAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 888887766554443322222 34444444444444444333333333333334444444444444444444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.38 E-value=3.6 Score=41.69 Aligned_cols=166 Identities=18% Similarity=0.116 Sum_probs=98.4
Q ss_pred HHhcCChhHHHHHHHHHHhcC-CCCCCch----HHHHHHHHHHHhcC-ChhhHHHHHHHHHHc----C---CCCCCH---
Q 046930 57 FCSQGNMSRAVEVLELMSDEN-VKYPFDN----FVCSSVVSGFCKIG-KPELAIGFFENAISL----G---ALKPNV--- 120 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~---~~~~~~--- 120 (965)
..++|+++.|...+.++.... ...|... ..++.+|......+ +++.|..+++++.+. + ...++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999887754 2113322 34566777777888 999999999998765 2 122332
Q ss_pred --hhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046930 121 --VSYTSLVIALCMLGRVN---EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAV 195 (965)
Q Consensus 121 --~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 195 (965)
.+...++.+|...+..+ +|..+.+.+.+.. ...+..+..-+.++.+.++.+++.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---------------------~~~~~~~~L~l~il~~~~~~~~~~ 141 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY---------------------GNKPEVFLLKLEILLKSFDEEEYE 141 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---------------------CCCcHHHHHHHHHHhccCChhHHH
Confidence 23446666677666655 3444454454321 122455555666666688888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCH
Q 046930 196 GILNKMIEDRLRPNLITYTAIIFGF---CKKGKLEEAFTVFKKVEDLGLVADE 245 (965)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~ 245 (965)
+.+.+|+..-.- ....+...+..+ .. .....|...+..+....+.|..
T Consensus 142 ~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 142 EILMRMIRSVDH-SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhccc-ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 888888876221 223333333333 33 2345566666665544444443
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.38 E-value=2 Score=45.35 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hHHHHHH
Q 046930 178 YTILLDGFSKEGTIEKAVGILNKMIEDRLR-PNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADE-FVYATLI 252 (965)
Q Consensus 178 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 252 (965)
-..+.....+.|+.++|.+.|.++.+..+. .+......|+.++...+.+.++..++.+..+...+.+. ..|+..+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 345666667889999999999988875433 23456677888888899999999888887655433222 3455443
|
The molecular function of this protein is uncertain. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.41 Score=43.35 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSF---TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
+..|..++... +.+.+ +......+.....| .+.+ ....++..+...|++++|+..+.+.+..........-+
T Consensus 54 S~~Y~~~i~~~--~ak~~-~~~~~~ekf~~~n~--~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAV--QAKKP-KSIAAAEKFVQANG--KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHH--hcCCc-hhHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHH
Confidence 34566666553 34444 33344444443331 2222 34557778889999999999999988654211122234
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
-..+++.....|.+|+|+..++.....+ -.+......+.++...|+-++|+.-|++.+..+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEES---WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4567888999999999999998765421 123345567889999999999999999998764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.16 Score=45.84 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=74.3
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGT-LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF 94 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (965)
+...+ ...|+++.|+..++.++..... .-.+.+-.+|++.....|+++.|+..++.....+. .+..-...++++
T Consensus 95 lAk~~-ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~elrGDil 169 (207)
T COG2976 95 LAKAE-VEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW----AAIVAELRGDIL 169 (207)
T ss_pred HHHHH-HhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH----HHHHHHHhhhHH
Confidence 34554 7899999999999998853321 11244567889999999999999999998776642 334566789999
Q ss_pred HhcCChhhHHHHHHHHHHcC
Q 046930 95 CKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~ 114 (965)
...|+-++|+..|++++...
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999999864
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.18 Score=45.12 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=73.1
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQ----------GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
|+.|.+.+....... |.|...+..-+-++... ..+++|+.-|+.++..+ |....++..++.+|..
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~---P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN---PNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHH
Confidence 456666666656555 45555555544444332 24567888888888899 8899999999999887
Q ss_pred cCC-----------hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 97 IGK-----------PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 97 ~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.+. |++|.+.|+++... .|+...|..-+... .+|-++..++.+.+
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 654 67788888888875 48888888777654 35777777776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.96 Score=48.70 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=46.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHH
Q 046930 632 CREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAK 711 (965)
Q Consensus 632 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 711 (965)
.+.|+++.|.++.++ .++...|..|+....++|+++-|.+.|++... +..|+-.|.-.|+.+.-.
T Consensus 329 l~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 345555555554322 12445666666666666666666666655322 334444455556555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046930 712 KLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHD 751 (965)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 751 (965)
++.+.....| -++....++.-.|++++..+++.+
T Consensus 394 kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 394 KLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555443 122223333444555555554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.028 Score=34.67 Aligned_cols=31 Identities=10% Similarity=0.379 Sum_probs=26.7
Q ss_pred hhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 934 CYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 934 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
.+.++..|.+.|++++|++.|++++..+|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4556556899999999999999999999974
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.1 Score=51.01 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=80.1
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
+..| -++|.|++|+..|...|... ++++.++..-+.+|.+..+|..|..-...++..+ .....+|+..+.+-..
T Consensus 104 GN~y-FKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 104 GNTY-FKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhh-hhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---HHHHHHHHHHHHHHHH
Confidence 3455 58899999999999998755 4577778888888999999999999999999888 5667899999999999
Q ss_pred cCChhhHHHHHHHHHHcC
Q 046930 97 IGKPELAIGFFENAISLG 114 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~ 114 (965)
.|+..+|.+-++.++...
T Consensus 178 Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALE 195 (536)
T ss_pred HhhHHHHHHhHHHHHhhC
Confidence 999999999999999864
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.029 Score=34.82 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=29.9
Q ss_pred HHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 046930 106 FFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNE 141 (965)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 141 (965)
+|+++++.+ |.++.+|+.++.+|...|++++|++
T Consensus 1 ~y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELN--PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 377888887 8889999999999999999999863
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.92 E-value=2.2 Score=44.97 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-C-hhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046930 730 NSFIDGYCKFGQLEEAFKFLHDLKINCLEP-D-KFTVSAVINGFCQKGDMEGALGFFLDF 787 (965)
Q Consensus 730 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (965)
..++.++.+.|+.+||++++++|.+.. ++ | ..+..+|+.++...+.+.++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 445555555555555555555554421 11 1 124444555555555555555555554
|
The molecular function of this protein is uncertain. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.91 E-value=7.1 Score=44.10 Aligned_cols=176 Identities=13% Similarity=0.045 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHH-----HHhcCcHHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHHc
Q 046930 636 YVNKALDLCAFAKNKGITVNIVTYNTVIHS-----LCRQGCFVEAFRLFDSLER-------IDMVPSEVSYATLIYNLCK 703 (965)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 703 (965)
....|...++...+.| +...-..++.+ +....+.+.|+.+|+.+.+ .+ .......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 3567888888887775 44444444433 3456789999999998876 44 33355666666766
Q ss_pred cC-----ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCChhHHHHHHHHHH---
Q 046930 704 EG-----QLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFG---QLEEAFKFLHDLKINCLEPDKFTVSAVINGFC--- 772 (965)
Q Consensus 704 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--- 772 (965)
.. +.+.|+.+|.+..+.| .|+ ....++.++.... +...|.++|..+...| ...++-.+..+|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~--a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPD--AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGL 374 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-Cch--HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCC
Confidence 43 5677999999998876 333 4445555554433 5789999999998865 2333333444441
Q ss_pred -hcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 773 -QKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 773 -~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
-.-+.+.|..++.+.-+.| .|...........+.. |+++.+.-.+..+.+.
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL 426 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh
Confidence 3347889999999998777 3332222223333344 8888888777766654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.29 Score=44.13 Aligned_cols=99 Identities=14% Similarity=0.045 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPF--DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
..-++-+...|++++|..-|..+++.-+..+. ....|...+.++.+.+.++.|+.-..+++..+ |....+......
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAe 176 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAE 176 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHH
Confidence 34456678899999999999999998741111 23457778889999999999999999999976 555567777788
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
+|.+..++++|++-|.++.+..|
T Consensus 177 ayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCc
Confidence 89999999999999999998643
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.034 Score=34.62 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=25.6
Q ss_pred hhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 934 CYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 934 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
++.++..|.+.|++++|++.|+++++..|+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4445445999999999999999999999964
|
... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.62 E-value=4.4 Score=38.75 Aligned_cols=194 Identities=14% Similarity=0.088 Sum_probs=126.5
Q ss_pred cCCHHHHHHHHHHHHhcCCcccH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhC---CCC--CCHhhHHHHHHHHHccC
Q 046930 634 EGYVNKALDLCAFAKNKGITVNI---VTYNTVIHSLCRQGCFVEAFRLFDSLERI---DMV--PSEVSYATLIYNLCKEG 705 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~--~~~~~~~~l~~~~~~~g 705 (965)
...+++|+.-|+++++.....-. .+...++..+.+.+++++..+.|.+++.. .+. -+..+.+++++..+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 45789999999998875322222 34566788889999999999999887642 121 23566788888777777
Q ss_pred ChHHHHHHHHHHHHC-CCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----C-------hhHHHHHHH
Q 046930 706 QLLDAKKLFDRMVLK-GFKPSTR----IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP----D-------KFTVSAVIN 769 (965)
Q Consensus 706 ~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~-------~~~~~~l~~ 769 (965)
+.+--.+.|+.-++. .-..|.. +-.-|+..|...|.+.+-.++++++-...... | ..+|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666666666654432 0112333 33578888999998888888888776542111 1 135656678
Q ss_pred HHHhcCCHHHHHHHHHHhHhC-CCCCChHHHH----HHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 770 GFCQKGDMEGALGFFLDFNTK-GVSPDFLGFL----YLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
.|....+-.+-..+|++.+-. .--|.+.... +=+.++.+.|++++|-.-|=++.+.++
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 888888878888888877531 2234333322 223456688999999887777776553
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.66 Score=43.40 Aligned_cols=126 Identities=13% Similarity=-0.054 Sum_probs=87.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcC
Q 046930 55 YSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLG 134 (965)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (965)
+.|....++..|+..|.+++..+ |..+.-|...+.++.+..+++.+.+--.++++.. +..+.....++..+....
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~n---P~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICIN---PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcC---CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhc
Confidence 34555667888888888888888 6676778888888888888888888888888854 344457777888888888
Q ss_pred ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046930 135 RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKM 201 (965)
Q Consensus 135 ~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 201 (965)
.+++|+..++++....- .....+....+..|..+--+.-...+..++.++.
T Consensus 93 ~~~eaI~~Lqra~sl~r----------------~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLR----------------EQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cccHHHHHHHHHHHHHh----------------cCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88899888888754321 2223344555666665544444455555555444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.60 E-value=6.3 Score=40.49 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHcCC-CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 046930 283 YNTIINGLCKVGRTSDAEEVSKGI-LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGAL 361 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 361 (965)
.+..+.-+...|+...|.++.+.+ .|+..-|...+.+++..++|++..+.... ..++.-|-.++..|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334455556667777777776655 36666677777777777777755543221 22346677778888888888
Q ss_pred HHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046930 362 EDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFD 404 (965)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 404 (965)
.+|..++..+.. ..-+..|.++|++.+|.+.-.
T Consensus 254 ~eA~~yI~k~~~----------~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKIPD----------EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhCCh----------HHHHHHHHHCCCHHHHHHHHH
Confidence 888877766321 234566788888888776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.59 E-value=10 Score=42.89 Aligned_cols=181 Identities=15% Similarity=0.097 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNV--VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
.-..+..+++...|..|+.+-..-. .+++. ......+.-+.+.|++++|...|-+.+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--------------- 397 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--------------- 397 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---------------
Confidence 3455666667777777776655422 12222 13334555566778888887777666542
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD 244 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 244 (965)
++|. .++.-|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|..
T Consensus 398 ------le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~-- 462 (933)
T KOG2114|consen 398 ------LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW-- 462 (933)
T ss_pred ------CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--
Confidence 1111 2344455555666666677777777665 55566677778888877777555544433 2211
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCC
Q 046930 245 EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGD 309 (965)
Q Consensus 245 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 309 (965)
..-....+..+.+.+-.++|..+-..... +...... .+-..+++++|.+.+..+|++
T Consensus 463 ~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 463 FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 11123344555555556666555433322 2222222 234457778888877777654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.55 E-value=3.2 Score=36.88 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=94.8
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch--
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN-- 84 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-- 84 (965)
.++-.|..-+.. .+.|..++|+..|.. +...|.-. ........+.+..+.|+-..|+..|+.+-...+. |.-.
T Consensus 57 ~sgd~flaAL~l--A~~~k~d~Alaaf~~-lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd 132 (221)
T COG4649 57 KSGDAFLAALKL--AQENKTDDALAAFTD-LEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRD 132 (221)
T ss_pred cchHHHHHHHHH--HHcCCchHHHHHHHH-HHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhH
Confidence 344456555553 578999999999999 44455422 2334556777788999999999999998776541 2111
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
.+-..-+-.+...|.|++.....+.+-..+ .+-....-..++-+-.+.|++.+|.++|..+...
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 122333445667899999888887765432 2333445668888889999999999999998763
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.11 Score=32.28 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.+|..++.++...|++++|++.|+++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456777777777777777777777777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.72 Score=42.60 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=76.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH--
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT-- 124 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-- 124 (965)
...+..++..|.+.|+.+.|++.|.++.+..........++..+++.....|++..+.....++........+....+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 456889999999999999999999999887654345567789999999999999999999999876431122222211
Q ss_pred --HHHHHHHhcCChhHHHHHHHHHHH
Q 046930 125 --SLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 125 --~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.-+-.+...+++.+|-+.|-....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 222335568999999999877653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.053 Score=34.26 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=20.7
Q ss_pred hHHHHhhhccchHHHHHHHHHHHhcccc
Q 046930 935 YSKVASFCSKGELQKANKLMKEMLSSFK 962 (965)
Q Consensus 935 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 962 (965)
..++..|.+.|+|++|+++|+++|+..+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3444459999999999999999665443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.087 Score=32.72 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.+|..++.+|...|++++|+..|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 466777777777777777777777777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.094 Score=33.11 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 111 (965)
+|..++.+|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677777777777777777777754
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.11 E-value=2.5 Score=37.46 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=48.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
.++..+...+........++.+...+ +.++...+.++..|++.. ..+.++.++. ..+......+++.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~---~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN---SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC---ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 45555556666777777777776665 456666777777776542 3344444442 112233444556666
Q ss_pred hcCChhHHHHHHHHH
Q 046930 132 MLGRVNEVNELFVRM 146 (965)
Q Consensus 132 ~~~~~~~A~~~~~~~ 146 (965)
+.+.++++..++.++
T Consensus 81 ~~~l~~~~~~l~~k~ 95 (140)
T smart00299 81 KAKLYEEAVELYKKD 95 (140)
T ss_pred HcCcHHHHHHHHHhh
Confidence 666666666666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.71 Score=42.62 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHhC---CCCCChHHHH
Q 046930 726 TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDK--FTVSAVINGFCQKGDMEGALGFFLDFNTK---GVSPDFLGFL 800 (965)
Q Consensus 726 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~ 800 (965)
...+..+++.|++.|+.++|++.|.++.+....|.. ..+..++......|++..+...+.++... +-.++...-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 346778899999999999999999998886555543 45677788888889999988888887542 2222222222
Q ss_pred HHH--HHHhcCCCHHHHHHHHHHHHhcC
Q 046930 801 YLV--KGLCTKGRMEEARSILREMLQSK 826 (965)
Q Consensus 801 ~l~--~~~~~~g~~~eA~~~~~~~~~~~ 826 (965)
... -.+...|++.+|.+.|-.+....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 222 23446899999999988777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.91 E-value=13 Score=41.64 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=62.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 046930 182 LDGFSKEGTIEKAVGILNKMIEDRLRP---NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR 258 (965)
Q Consensus 182 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (965)
+..+.+.+.+++|+.+-+..... .| -.......+..+.-.|++++|-...-.|.. .+...|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 34567788888888877665443 22 234456677788888899998888887773 3566666666666666
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046930 259 GDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK 292 (965)
Q Consensus 259 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 292 (965)
+.......+ +.......+..+|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 655443332 2222122345566666655554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.69 E-value=9 Score=38.88 Aligned_cols=150 Identities=14% Similarity=0.228 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc--c----CChHHHHHHHHHHHHCC-C--CCChhhHHHHHHHHHhcCC-
Q 046930 672 FVEAFRLFDSLERIDMVPSEVSYATLIYNLCK--E----GQLLDAKKLFDRMVLKG-F--KPSTRIYNSFIDGYCKFGQ- 741 (965)
Q Consensus 672 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~g~- 741 (965)
+++.+.+++.|.+.|++-+..+|.+....... . ....+|.++|+.|.+.. + .++...+..|... ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788888888888887776664433332 2 23567899999999862 1 1223333333221 3333
Q ss_pred ---HHHHHHHHHHhhhCCCCCCh-hHHHHHHHHHHh-cC--CHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHH
Q 046930 742 ---LEEAFKFLHDLKINCLEPDK-FTVSAVINGFCQ-KG--DMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEE 814 (965)
Q Consensus 742 ---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~e 814 (965)
.++++.+|+.+.+.|+..+. .-+.+-+-++.. .. ...++.++++.+.+.|+++...+|-.+|-.-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 36778889999988888743 233333333322 11 256889999999999999888777766654444444434
Q ss_pred HHHHHHHHH
Q 046930 815 ARSILREML 823 (965)
Q Consensus 815 A~~~~~~~~ 823 (965)
..+.+.++.
T Consensus 236 ~~~~i~ev~ 244 (297)
T PF13170_consen 236 IVEEIKEVI 244 (297)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=17 Score=41.72 Aligned_cols=326 Identities=8% Similarity=-0.009 Sum_probs=149.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC
Q 046930 56 SFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR 135 (965)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (965)
...+.|++..+..+...+. .. |..+..-...+..-.....+++...++++-.. .|.....-......+.+.++
T Consensus 42 ~a~~~g~~~~~~~~~~~l~-d~---pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~---~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLK-DY---PLYPYLEYRQLTQDLMNQPAVQVTNFIRANPT---LPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHCCCHHHHHHHHHhcc-CC---CcHhHHHHHHHHhccccCCHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHccC
Confidence 3567778888777666552 22 43333322222222222234443333333111 12222233344445556666
Q ss_pred hhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 046930 136 VNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTA 215 (965)
Q Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 215 (965)
+......+.. .+.+...-.....+....|+.++|......+=..|.. .+..+..
T Consensus 115 w~~~~~~~~~-------------------------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~ 168 (644)
T PRK11619 115 WRGLLAFSPE-------------------------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDK 168 (644)
T ss_pred HHHHHHhcCC-------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHH
Confidence 6665552211 0234444455666677777777666555555433322 3444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC
Q 046930 216 IIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIV-TYNTIINGLCKVG 294 (965)
Q Consensus 216 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g 294 (965)
++..+.+.|.+. +...+..+ ......|+...|..+...+. ++.. ....++..+ .
T Consensus 169 l~~~~~~~g~lt----------------~~d~w~R~-~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~---~ 223 (644)
T PRK11619 169 LFSVWQQSGKQD----------------PLAYLERI-RLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQ---N 223 (644)
T ss_pred HHHHHHHcCCCC----------------HHHHHHHH-HHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHH---H
Confidence 555444444322 22223222 22234455555544444331 1111 112222222 1
Q ss_pred CcchHHHHHcCCCCCHH--HHHHHHHHhhhcCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 295 RTSDAEEVSKGILGDVV--TYSTLLHGYIEEDNVNGILETKQRLEEAG-IQMD--IVMCNILIKALFMVGALEDARALYQ 369 (965)
Q Consensus 295 ~~~~a~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 369 (965)
+...+......++++.. ....+.-.-....+.+.|...+....... ..++ ..+...+.......+...++...+.
T Consensus 224 ~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~ 303 (644)
T PRK11619 224 DPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRD 303 (644)
T ss_pred CHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 22222323333322221 11111112223455567777776653332 1111 1223333333333322456666666
Q ss_pred HchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 370 AMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELN 441 (965)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 441 (965)
...... .+.....--+......++++.+...+..|.........-..-+++++...|+.++|...|+++.
T Consensus 304 ~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 304 DVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred hccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 544322 2333344444455577777777777777655444455566667777667777777777777763
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.83 Score=44.97 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
.++..++..+...|+++.+.+.+++.+..+ |-+...|..++.+|.+.|+...|+..|+++.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~--------------- 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT--------------- 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH---------------
Confidence 456678888899999999999999999987 778889999999999999999999999999863
Q ss_pred hhhhcCCCCCHHHHHHHHHH
Q 046930 165 QMVDKGIKPDTVSYTILLDG 184 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~ 184 (965)
.+...|+.|...+......+
T Consensus 217 ~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 217 LAEELGIDPAPELRALYEEI 236 (280)
T ss_pred hhhhcCCCccHHHHHHHHHH
Confidence 34467888888887777666
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.7 Score=40.86 Aligned_cols=119 Identities=10% Similarity=-0.099 Sum_probs=86.7
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
-...+|..|+..|.+++...+ ..+..|..-+-++.+..+|+.+..--.++++.. |..+...+.++........++
T Consensus 21 f~~k~y~~ai~~y~raI~~nP--~~~~Y~tnralchlk~~~~~~v~~dcrralql~---~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINP--TVASYYTNRALCHLKLKHWEPVEEDCRRALQLD---PNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cchhhhchHHHHHHHHHhcCC--CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC---hHHHHHHHHHHHHHHhhcccc
Confidence 455678999999999998652 233456667778899999999999999999998 788899999999999999999
Q ss_pred hHHHHHHHHHHc---CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 046930 102 LAIGFFENAISL---GALKPNVVSYTSLVIALCMLGRVNEVNELFVR 145 (965)
Q Consensus 102 ~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 145 (965)
+|+..+.++.+. ..+++-...+..+..+--..-...+...+.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 999999999543 22333344555555443333333344444333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.19 E-value=2 Score=36.17 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHH
Q 046930 188 EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRL 267 (965)
Q Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 267 (965)
.|+.......+-.+- .+.......+..+..+|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.++
T Consensus 69 C~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp -S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hcchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 445555554444332 134445566777888888888888888877643 67778888888888888888888888
Q ss_pred HHHHHHCCCC
Q 046930 268 LEDMEKKGIK 277 (965)
Q Consensus 268 ~~~~~~~g~~ 277 (965)
+.+.-++|.+
T Consensus 143 l~~ACekG~k 152 (161)
T PF09205_consen 143 LKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHHhchH
Confidence 8888887754
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.07 E-value=12 Score=38.43 Aligned_cols=149 Identities=13% Similarity=0.062 Sum_probs=80.6
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh--
Q 046930 23 KRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS----QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK-- 96 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 96 (965)
..+++..|...+..+... .+......++..|.. ..+..+|..+|..+.+.+ .+.+...++..|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~----~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-----~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL----GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-----LAEALFNLGLMYANGR 123 (292)
T ss_pred ccccHHHHHHHHHHhhhc----CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-----cHHHHHhHHHHHhcCC
Confidence 445666677776665431 122444455554443 235667777777665554 34566667777766
Q ss_pred --cCChhhHHHHHHHHHHcCCCCCC-HhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 97 --IGKPELAIGFFENAISLGALKPN-VVSYTSLVIALCMLG-------RVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 97 --~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
..++.+|..+|+++.+.+ .++ ..+...+...|.... +...|...|.++-..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~----------------- 184 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLG--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL----------------- 184 (292)
T ss_pred CcccCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-----------------
Confidence 447778888888887765 222 223444554444331 122555566555543
Q ss_pred hhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 046930 167 VDKGIKPDTVSYTILLDGFSK----EGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 205 (965)
-+......+...|.. ..++.+|...|....+.|
T Consensus 185 ------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 185 ------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred ------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 133344444444432 235666666666666654
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.04 E-value=18 Score=40.41 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=39.7
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHH--HHHHHHHHhcCcHHHHHHHHHHHHh
Q 046930 619 MDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTY--NTVIHSLCRQGCFVEAFRLFDSLER 684 (965)
Q Consensus 619 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~ 684 (965)
+|+.-...+.-++.-..+++....+.+-+.+. ..|.+..- -.|+-+|+-.| ..+|+.+++-|.+
T Consensus 569 DDVrRaAVialGFVl~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLFRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hHHHHHHHHHheeeEecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 34555555556666667888887777766655 45555433 33444555554 4678888888876
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.98 E-value=14 Score=39.15 Aligned_cols=404 Identities=12% Similarity=0.070 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC-ChhhHHHHH
Q 046930 29 KALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG-KPELAIGFF 107 (965)
Q Consensus 29 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~ 107 (965)
.-..+|+.+.... +.|...|...+.-+-+.+.+.+.-.+|.+++..+ |.++..|..-+.-...-+ +.+.|..+|
T Consensus 89 rIv~lyr~at~rf--~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H---p~~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 89 RIVFLYRRATNRF--NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH---PNNPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCchhHHhhhhhHHhhccchHHHHHHH
Confidence 3455677776543 5688899999987777777999999999999998 889999987777555555 499999999
Q ss_pred HHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHH--HHHH---H
Q 046930 108 ENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVS--YTIL---L 182 (965)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~l---~ 182 (965)
.+.++.+ |.++..|....+.-.. .+..+..+-...|...+..+ ...-.++.......++... +..- .
T Consensus 164 lrgLR~n--pdsp~Lw~eyfrmEL~-----~~~Kl~~rr~~~g~~~~~~~-~eie~ge~~~~~~~~s~~~~~~~~k~~e~ 235 (568)
T KOG2396|consen 164 LRGLRFN--PDSPKLWKEYFRMELM-----YAEKLRNRREELGLDSSDKD-EEIERGELAWINYANSVDIIKGAVKSVEL 235 (568)
T ss_pred HHHhhcC--CCChHHHHHHHHHHHH-----HHHHHHHHHHHhccccchhH-HHHHHHHHHHHhhccchhhhhcchhhcch
Confidence 9999976 5555566544433211 11111111111111111110 0000000000000011000 0000 0
Q ss_pred HHHHhcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHH----HHHh---------------cCChHHHHHHHHHHHHcCCC
Q 046930 183 DGFSKEGTIEKA-VGILNKMIEDRLRPNLITYTAIIF----GFCK---------------KGKLEEAFTVFKKVEDLGLV 242 (965)
Q Consensus 183 ~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---------------~g~~~~A~~~~~~~~~~~~~ 242 (965)
..........+. ..+.+.+...+ +.++.++.-+.. ++.+ .-+-+....+|++..+. .
T Consensus 236 ~~~~~~d~~kel~k~i~d~~~~~~-~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l 312 (568)
T KOG2396|consen 236 SVAEKFDFLKELQKNIIDDLQSKA-PDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--L 312 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--h
Confidence 000000111111 11222222222 223333332221 1111 01223344666666543 4
Q ss_pred CCHhHHHHHHHHHHhcC------CHhHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCcc-hHHHHH-cCCCCCHHH
Q 046930 243 ADEFVYATLIDGVCRRG------DLDCAFRLLEDMEKK-GIKPS-IVTYNTIINGLCKVGRTS-DAEEVS-KGILGDVVT 312 (965)
Q Consensus 243 ~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~-g~~~~-~~~~~~l~~~~~~~g~~~-~a~~~~-~~~~~~~~~ 312 (965)
++...|+..|..|...- .+.....+++..... +..++ ...|..+...+....... -|..+. +.+..+...
T Consensus 313 ~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~ 392 (568)
T KOG2396|consen 313 PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKM 392 (568)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHH
Confidence 45556666666554322 233444455544432 22222 345555555555444333 333333 344566666
Q ss_pred HHHHHHHhhhc-CChhHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH--HHHHHchhCCCcccHHH-HHHH
Q 046930 313 YSTLLHGYIEE-DNVNGI-LETKQRLEEAGIQMDIVMCNILIKALFMVGA-LEDAR--ALYQAMPEMNLVANSVT-YSTM 386 (965)
Q Consensus 313 ~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~--~~~~~~~~~~~~~~~~~-~~~l 386 (965)
|..-+...... .+++-. ...+......-..+-...|+... .++ .+... .++..+...+ .|+..+ -+.+
T Consensus 393 ~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~ 466 (568)
T KOG2396|consen 393 WQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKY 466 (568)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHH
Confidence 65555544422 122211 12222222221111222232222 122 11111 1222222222 244433 3456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHC-CCCCCHHhHHHHH
Q 046930 387 IDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCK--SGMVDMATEVFIELNEK-GLSLYVGMHKIIL 456 (965)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l 456 (965)
+..+...|-..+|...|..+....|++...+..++..-.. .-+...+..+|+.|... | .|+..+...+
T Consensus 467 l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~ 537 (568)
T KOG2396|consen 467 LDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYM 537 (568)
T ss_pred HHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHH
Confidence 7777788888899999998888888888888877765332 12266677777777653 3 4444443333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=92.68 E-value=1.5 Score=37.57 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHh---------------CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHC-
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLER---------------IDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK- 720 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 720 (965)
.++.+++.++++.|+.+....+++..=. ..+.|+..+..+++.+|+..|++..|+++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3444555555555555555554443211 112344444444444444444444444444444433
Q ss_pred CCCCChhhHHHH
Q 046930 721 GFKPSTRIYNSF 732 (965)
Q Consensus 721 ~~~~~~~~~~~l 732 (965)
+++.+...|..|
T Consensus 83 ~I~i~~~~W~~L 94 (126)
T PF12921_consen 83 PIPIPKEFWRRL 94 (126)
T ss_pred CCCCCHHHHHHH
Confidence 333333444333
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.64 E-value=20 Score=40.01 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=70.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 046930 664 HSLCRQGCFVEAFRLFDSLERIDMVPS--EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQ 741 (965)
Q Consensus 664 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 741 (965)
-++..-|+-++|-.+.++|.... .|- ..-...+..+|+-.|+.....+++.-.+.. ...|+.-.-..+-.+.-..+
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecC
Confidence 44556677778888888877632 222 111234455677777766666666655543 34455555555555666677
Q ss_pred HHHHHHHHHHhhhCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 046930 742 LEEAFKFLHDLKINCLEPDKF--TVSAVINGFCQKGDMEGALGFFLDFN 788 (965)
Q Consensus 742 ~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (965)
.+.....++-+.+. ..|-.. +--.|+-+|...|+ .+|+.+++.|.
T Consensus 587 p~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~ 633 (929)
T KOG2062|consen 587 PEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLT 633 (929)
T ss_pred hhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhh
Confidence 77777776666553 455332 33345555555555 56888888774
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.63 E-value=6.5 Score=34.77 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC
Q 046930 180 ILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRG 259 (965)
Q Consensus 180 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 259 (965)
.++..+.+.+.......+++.+...+. .+...++.++..|++.+ ..+.+..+.. . .+.......+..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 456666667778888888888877764 46667777777777653 3344444432 1 12223334555555556
Q ss_pred CHhHHHHHHHHH
Q 046930 260 DLDCAFRLLEDM 271 (965)
Q Consensus 260 ~~~~A~~~~~~~ 271 (965)
-++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666555544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.9 Score=36.93 Aligned_cols=96 Identities=8% Similarity=0.036 Sum_probs=56.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 120 VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILN 199 (965)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 199 (965)
..++..++.++++.|+.+....+.++.-..++ +...-..- .-......|+..+..+++.+|+..|++..|+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~~~~~~---~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd 76 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGKKKEGD---YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVD 76 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCccccCc---cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34566777778888888877777765543221 11000000 01123445777777777777777777777777777
Q ss_pred HHHHC-CCCCCHHHHHHHHHHH
Q 046930 200 KMIED-RLRPNLITYTAIIFGF 220 (965)
Q Consensus 200 ~~~~~-~~~~~~~~~~~l~~~~ 220 (965)
...+. +++-+..+|..|+.-.
T Consensus 77 ~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 77 FFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHHcCCCCCHHHHHHHHHHH
Confidence 76654 4555566666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.39 Score=50.84 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=84.4
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
...|+.-.|++..|.+.+..++-..+... ......|++.+.+.|..-+|..++.+.+..+ ...+-.+..++++|+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~-~v~~v~la~~~~~~~~~~da~~~l~q~l~~~---~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQ-DVPLVNLANLLIHYGLHLDATKLLLQALAIN---SSEPLTFLSLGNAYLA 688 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhh-cccHHHHHHHHHHhhhhccHHHHHHHHHhhc---ccCchHHHhcchhHHH
Confidence 34565778999999999999886554322 2345678888889999999999999988887 4555678889999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 97 IGKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
..+.+.|++.|+++++.. +.++..-+.+..+-|
T Consensus 689 l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLT--TKCPECENSLKLIRC 721 (886)
T ss_pred HhhhHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 999999999999999876 666766666665443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.42 E-value=17 Score=38.57 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP---NLITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
....+|..++..+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|+..++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446678888888999999999999999888754221 234444556677788888999988888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.35 E-value=23 Score=40.04 Aligned_cols=182 Identities=15% Similarity=0.090 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH-----hcCChhhHHHHHHHHHHc---CCCCCCHhhHHHHHHHHHhcC
Q 046930 63 MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC-----KIGKPELAIGFFENAISL---GALKPNVVSYTSLVIALCMLG 134 (965)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 134 (965)
...|.+.++.+.+.+ +..+...++.+|. ..++.+.|+.+|..+... ......+.+...++.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g-----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhc-----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence 467888888888776 3344555555544 456899999999999761 101124457778888888754
Q ss_pred -----ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 046930 135 -----RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSK---EGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 135 -----~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 206 (965)
+.+.|..+|.+.-..|. |+.... +...+.. ..+...|.++|..+.+.|.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~---------------------~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGN---------------------PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCC---------------------chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 56779999998887642 444443 3333332 2467899999999998874
Q ss_pred CCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046930 207 RPNLITYTAIIFGFC----KKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIK 277 (965)
Q Consensus 207 ~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 277 (965)
..++-.+..+|. ...+...|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+...|.+
T Consensus 360 ---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 360 ---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred ---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 333333333332 2247889999999999988 3332222223333444 7888888777777776544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.19 E-value=26 Score=40.29 Aligned_cols=300 Identities=12% Similarity=-0.050 Sum_probs=156.7
Q ss_pred HHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCH
Q 046930 558 KFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYV 637 (965)
Q Consensus 558 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 637 (965)
.....+...|...+|+..--.+.+-..-..........+...+++..-....+.+....-..++..--.-+.......++
T Consensus 352 ~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~ 431 (894)
T COG2909 352 AAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRL 431 (894)
T ss_pred HHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccCh
Confidence 34445555556666655433222211111111222224555555554444444433222222222223334455667899
Q ss_pred HHHHHHHHHHHhcCCcccH-------HHHHHHHH-HHHhcCcHHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHccC
Q 046930 638 NKALDLCAFAKNKGITVNI-------VTYNTVIH-SLCRQGCFVEAFRLFDSLERI----DMVPSEVSYATLIYNLCKEG 705 (965)
Q Consensus 638 ~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g 705 (965)
++|..+..++...-..|+. ..++.+-. .....|++++|.++.+..... -..+....+..+..+..-.|
T Consensus 432 ~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G 511 (894)
T COG2909 432 AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRG 511 (894)
T ss_pred HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhc
Confidence 9999999887654222222 13444432 334578899999998887763 22344566777778888899
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhH-----HHHHHHHHhcCCH--HHHHHHHHHhhhC--CCCCC----hhHHHHHHHHHH
Q 046930 706 QLLDAKKLFDRMVLKGFKPSTRIY-----NSFIDGYCKFGQL--EEAFKFLHDLKIN--CLEPD----KFTVSAVINGFC 772 (965)
Q Consensus 706 ~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~--~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~ 772 (965)
++++|..+..+..+..-.-+...+ ..-...+..+|.. .+....|...... .-.|- ..++..+..++.
T Consensus 512 ~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~ 591 (894)
T COG2909 512 ELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWL 591 (894)
T ss_pred hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 999999888877653112232222 2234556777843 3444444443332 11221 124444555553
Q ss_pred hcCCHHHHHHHHHHhHhCC--CCCCh--HH--HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHH
Q 046930 773 QKGDMEGALGFFLDFNTKG--VSPDF--LG--FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLN 846 (965)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~--~~p~~--~~--~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (965)
+ ++.+..-.....+.+ ..|.. .. +..|+......|++++|...++++..... ..+-++...+...
T Consensus 592 r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~------~~~~~~~~~a~~~ 662 (894)
T COG2909 592 R---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL------NGQYHVDYLAAAY 662 (894)
T ss_pred H---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc------CCCCCchHHHHHH
Confidence 3 344433333322221 22322 22 33688888899999999999988876321 1111222222333
Q ss_pred HHHH--hhhcCcHHHHHHHHHH
Q 046930 847 FLIS--LCEQGSILEAIAILDE 866 (965)
Q Consensus 847 l~~~--~~~~g~~~~A~~~~~~ 866 (965)
.+.. ....|+.++|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 3332 2367999988887665
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.10 E-value=27 Score=40.25 Aligned_cols=201 Identities=12% Similarity=0.128 Sum_probs=120.3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--chHHHHHHHHHHH-hcCChhhHHHHHHHHHHcCCCCCCHh
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF--DNFVCSSVVSGFC-KIGKPELAIGFFENAISLGALKPNVV 121 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~ 121 (965)
.....|..++. .|+++++.+.+.. ..|| ...+...++..+. ...+++.|...+++++.... .++..
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~-~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~ 96 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQF-KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLT 96 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchH
Confidence 34455666663 6788888888532 1244 3445778888877 67899999999999976541 23322
Q ss_pred -----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 046930 122 -----SYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL-LDGFSKEGTIEKAV 195 (965)
Q Consensus 122 -----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~ 195 (965)
....+++.+.+.+... |....++.++.- ...+..+-...+..+ +..+...+++..|.
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~----------------~~~~~~~w~~~frll~~~l~~~~~d~~~Al 159 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS----------------ETYGHSAWYYAFRLLKIQLALQHKDYNAAL 159 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH----------------hccCchhHHHHHHHHHHHHHHhcccHHHHH
Confidence 2335566677766666 888888877631 011111222333333 22333347999999
Q ss_pred HHHHHHHHCC---CCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCC---------CCCHhHHHHHHHHH--HhcC
Q 046930 196 GILNKMIEDR---LRPNLITYTAIIFG--FCKKGKLEEAFTVFKKVEDLGL---------VADEFVYATLIDGV--CRRG 259 (965)
Q Consensus 196 ~~~~~~~~~~---~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g 259 (965)
+.++.+.... ..|-...+-.++.+ ..+.+..+++.+..+++..... .|-..+|..+++.+ ...|
T Consensus 160 ~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~ 239 (608)
T PF10345_consen 160 ENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQG 239 (608)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 9999887642 22233333334333 3355667778887777643211 23455666666554 4578
Q ss_pred CHhHHHHHHHHHHH
Q 046930 260 DLDCAFRLLEDMEK 273 (965)
Q Consensus 260 ~~~~A~~~~~~~~~ 273 (965)
+++.+...++++..
T Consensus 240 ~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 240 DVKNSKQKLKQLQQ 253 (608)
T ss_pred CHHHHHHHHHHHHH
Confidence 87788777766653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=18 Score=37.93 Aligned_cols=123 Identities=13% Similarity=-0.012 Sum_probs=84.0
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
+..||.-.|-+.+..+++..+-.|+ .......++...|+++.+...+..+...- .....+...+++...+.|+++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~---~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKII---GTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhh---cCCchHHHHHHHhhhchhhHH
Confidence 4678888888888888886643344 44444555778899999888887665443 223356677788888889999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
+|...-+-++... -.++..........-..|-++++.-.++++...++
T Consensus 375 ~a~s~a~~~l~~e--ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 375 EALSTAEMMLSNE--IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHhccc--cCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 9998888887654 23344333333334556778888888888876543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.84 E-value=2 Score=42.47 Aligned_cols=79 Identities=11% Similarity=0.215 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHhHHH
Q 046930 380 SVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNE-----KGLSLYVGMHKI 454 (965)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 454 (965)
..++..++..+...|+++.+...++++...+|.+...|..++.+|.+.|+...|+..|+++.. .|+.|.......
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 346777888899999999999999999999999999999999999999999999999998765 577777666554
Q ss_pred HHHH
Q 046930 455 ILQA 458 (965)
Q Consensus 455 ~l~~ 458 (965)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.74 E-value=17 Score=37.01 Aligned_cols=131 Identities=14% Similarity=0.214 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh--c----CcHHHHHHHHHHHHhCCC---CCCHhhHHHHHHHHHccCC-
Q 046930 637 VNKALDLCAFAKNKGITVNIVTYNTVIHSLCR--Q----GCFVEAFRLFDSLERIDM---VPSEVSYATLIYNLCKEGQ- 706 (965)
Q Consensus 637 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 706 (965)
+++.+.+++.+.+.|..-+..+|-+....... . ....+|.++|+.|.+.-. .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567888999999998887777664433332 2 235679999999988421 2445566666543 3333
Q ss_pred ---hHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCChhHHHHHHH
Q 046930 707 ---LLDAKKLFDRMVLKGFKPSTRI-YNSFIDGYCKFG---QLEEAFKFLHDLKINCLEPDKFTVSAVIN 769 (965)
Q Consensus 707 ---~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 769 (965)
.+.+..+|+.+.+.|+..+... +.+-+-++...- ....+.++++.+.+.|+++....|..++-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3567788888888787765332 222222222211 14578888999999998888777665543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=17 Score=36.65 Aligned_cols=217 Identities=14% Similarity=0.077 Sum_probs=125.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH----HHHHHHHHHHHhCCCCCCHhhHH
Q 046930 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCF----VEAFRLFDSLERIDMVPSEVSYA 695 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~ 695 (965)
|.......+.++...|. +++...+..+... +|...-...+.++.+.|+. .++...+..+... .++..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44455555556666554 3333334444332 2445555556666666653 4567777666443 35555555
Q ss_pred HHHHHHHccCC-----hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHH
Q 046930 696 TLIYNLCKEGQ-----LLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVING 770 (965)
Q Consensus 696 ~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 770 (965)
..+.++...+. ..++.+.+..+.. .++..+-...+.++.+.|+ .+|+..+-.+++ .+|...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 55555554432 1234444444443 3455566666777777776 567777777775 4555555555566
Q ss_pred HHhcC-CHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHH
Q 046930 771 FCQKG-DMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLI 849 (965)
Q Consensus 771 ~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 849 (965)
+...+ ..+.+...+..++. .++......-+.++.+.|. ..|+..+.+.++.+. .....+.
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~---------------~~~~a~~ 243 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT---------------VGDLIIE 243 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc---------------hHHHHHH
Confidence 65543 24567777777652 5566666667777777777 578887777776321 2344556
Q ss_pred HhhhcCcHHHHHHHHHHHhh
Q 046930 850 SLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 850 ~~~~~g~~~~A~~~~~~~~~ 869 (965)
++.+.|.. +|+..+.++..
T Consensus 244 ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 244 AAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHhcCCH-hHHHHHHHHHh
Confidence 67777774 78888877654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.19 E-value=7.5 Score=34.59 Aligned_cols=50 Identities=12% Similarity=-0.097 Sum_probs=22.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 046930 59 SQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 111 (965)
+.++.+++..+++.+.-.. |..++.-..-+..+...|+|++|+.+|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR---P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR---PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3344444444444444444 3344444444444444444444444444443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.14 E-value=21 Score=37.06 Aligned_cols=81 Identities=12% Similarity=0.035 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh---cCChhHH
Q 046930 63 MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM---LGRVNEV 139 (965)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A 139 (965)
.+.-+.+|+++++.+ |.+...+...+..+.+.-+.++..+.+++++... +.+...|...+..... .-.++..
T Consensus 47 ~E~klsilerAL~~n---p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKHN---PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHH
Confidence 457788999999997 8899999999999999999999999999999876 6678888877765433 2356677
Q ss_pred HHHHHHHHH
Q 046930 140 NELFVRMES 148 (965)
Q Consensus 140 ~~~~~~~~~ 148 (965)
..+|.+.+.
T Consensus 122 ~~~y~~~l~ 130 (321)
T PF08424_consen 122 RDVYEKCLR 130 (321)
T ss_pred HHHHHHHHH
Confidence 777777664
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=91.09 E-value=2.2 Score=33.93 Aligned_cols=69 Identities=16% Similarity=0.097 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhH
Q 046930 67 VEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNE 138 (965)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (965)
+..++..++.+ |.+..+...++..+...|++++|++.+-.+++.+.-..+...-..++.++...|.-+.
T Consensus 8 ~~al~~~~a~~---P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 8 IAALEAALAAN---PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 34455556666 6777788888888888888888888887777654222233455556666655555443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.51 Score=49.24 Aligned_cols=93 Identities=13% Similarity=0.036 Sum_probs=69.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
.-+......+.++.|+..|.++++.+ |..+..+...+.++.+.+++..|+.-+.++++.+ |.....|..-+.++.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVM 83 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHH
Confidence 34455566777888888888888887 6666777777778888888888888888888765 445567777777777
Q ss_pred hcCChhHHHHHHHHHHHC
Q 046930 132 MLGRVNEVNELFVRMESE 149 (965)
Q Consensus 132 ~~~~~~~A~~~~~~~~~~ 149 (965)
+.+.+.+|...|+.....
T Consensus 84 ~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKL 101 (476)
T ss_pred hHHHHHHHHHHHHHhhhc
Confidence 888888888888777653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.98 E-value=11 Score=33.57 Aligned_cols=72 Identities=18% Similarity=0.044 Sum_probs=38.7
Q ss_pred HhcCCHHHHHHHHHHchhCCCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 046930 356 FMVGALEDARALYQAMPEMNLVANSV-TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGM 429 (965)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (965)
.+.++.+++..++..+.-. .|... .-..-+..++..|+|.+|+.+|+++....+..+.+--.+..++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 3456667777776666553 24332 222234446667777777777777665554444444444444444443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.97 E-value=17 Score=37.72 Aligned_cols=108 Identities=11% Similarity=0.010 Sum_probs=72.8
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHhcC------------ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh
Q 046930 70 LELMSDENVKYPFDNFVCSSVVSGFCKIG------------KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN 137 (965)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (965)
|++.++.+ |.+..+|..++..--..- -.+.-+.+|+++++.+ |.+...+..++..+.+..+.+
T Consensus 8 l~~~v~~~---P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 8 LNRRVREN---PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN--PDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHhC---cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHH
Confidence 44444555 666666666665332221 1356678899999886 677788889999999998999
Q ss_pred HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 046930 138 EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSK---EGTIEKAVGILNKMIE 203 (965)
Q Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 203 (965)
+..+.+++++...+ -+...|...+..... .-.++....+|.+.++
T Consensus 83 ~l~~~we~~l~~~~---------------------~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 83 KLAKKWEELLFKNP---------------------GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHHHHCC---------------------CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 98999999987532 356777777765443 2346666666666554
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.79 E-value=6.6 Score=37.17 Aligned_cols=100 Identities=6% Similarity=-0.034 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhC------CCCCC----------HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNH------GTLPS----------SFTFCSLVYSFCSQGNMSRAVEVLELMS 74 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (965)
++.+.=+..+ -+.|++.+|...|++++..- --|.+ ...+..+.+++...|++-++++--..++
T Consensus 179 ~~l~q~GN~l-fk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 179 PVLHQEGNRL-FKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHHhhhhh-hhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4555556666 57788888888888876411 11112 2345566677777788888888888888
Q ss_pred hcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 75 DENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
... |.+..+|+..+.+....=+.++|..-|.+++..+
T Consensus 258 ~~~---~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RHH---PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hcC---CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 777 7788888888888887778888888888888754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.79 E-value=2.1 Score=45.88 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=98.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRV 136 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (965)
..-.|+++.|..++..+. .+....+++.+.++|..++|+++ .+|+.-.. ....+.|++
T Consensus 596 ~vmrrd~~~a~~vLp~I~---------k~~rt~va~Fle~~g~~e~AL~~----------s~D~d~rF---elal~lgrl 653 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP---------KEIRTKVAHFLESQGMKEQALEL----------STDPDQRF---ELALKLGRL 653 (794)
T ss_pred HhhhccccccccccccCc---------hhhhhhHHhHhhhccchHhhhhc----------CCChhhhh---hhhhhcCcH
Confidence 345577777777665543 23455677777777776666543 23332222 224567888
Q ss_pred hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046930 137 NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAI 216 (965)
Q Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 216 (965)
+.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|
T Consensus 654 ~iA~~la~e~--------------------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~L 698 (794)
T KOG0276|consen 654 DIAFDLAVEA--------------------------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSL 698 (794)
T ss_pred HHHHHHHHhh--------------------------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhh
Confidence 8888876654 3567788888888888999999888887753 4556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 217 IFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
+-.+...|+.+....+-....+.| ..|. ..-+|...|+++++.+++..-
T Consensus 699 lLl~t~~g~~~~l~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 699 LLLYTSSGNAEGLAVLASLAKKQG-KNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhhhhhcCChhHHHHHHHHHHhhc-ccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 666777777776666666666655 3232 233566778888888776543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.64 E-value=35 Score=39.16 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 046930 245 EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKV 293 (965)
Q Consensus 245 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 293 (965)
..+|. +|-.+.+.|++++|.++..+.... .......+...+..|...
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 34554 455667899999999988555433 222344566666666654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.20 E-value=41 Score=38.85 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=31.3
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCC----CCCHHHHHHHHH--HHHhcCCHHHHHHHHHHc
Q 046930 315 TLLHGYIEEDNVNGILETKQRLEEAGI----QMDIVMCNILIK--ALFMVGALEDARALYQAM 371 (965)
Q Consensus 315 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~ 371 (965)
.|+......|+.++|...++++..... .++-..-...+. .....|+.+.+.....+-
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 455666677777777777776654322 222222222222 234578877777766653
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.33 Score=33.70 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=24.8
Q ss_pred hHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 935 YSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 935 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
|.+.-++++.|+|++|++..+.+|+..|+|
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 455455999999999999999999999997
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.58 Score=28.87 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.+|..++.+|...|++++|...|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456777777777777777777777777643
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.61 Score=28.47 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (965)
++..++.++.+.|++++|++.|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455666666666666666666666654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.29 E-value=3.2 Score=40.03 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 046930 173 PDTVSYTILLDGFSK-----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFV 247 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 247 (965)
.|-.+|...+..+.. .+.++=....+..|.+.|+..|..+|+.|+..+=+.. +.|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-H
Confidence 445555555554432 2344445555555666666666666665555432211 11111 1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046930 248 YATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGR 295 (965)
Q Consensus 248 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 295 (965)
+....-.| -.+-+-+++++++|...|+.||..+-..|+.++.+.+-
T Consensus 128 fQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111 12345688999999999999999999999998876654
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.32 Score=48.09 Aligned_cols=91 Identities=21% Similarity=0.185 Sum_probs=77.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC
Q 046930 56 SFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR 135 (965)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (965)
-....|.++.|++.|..+++.+ |+....+...+.++++.+++..|+.-++.++..+ +.+..-|-.-..+....|+
T Consensus 123 eAln~G~~~~ai~~~t~ai~ln---p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELN---PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHhcCcchhhhhcccccccccC---CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhc
Confidence 3457789999999999999999 8899999999999999999999999999999865 3334466666777778999
Q ss_pred hhHHHHHHHHHHHCCC
Q 046930 136 VNEVNELFVRMESEGL 151 (965)
Q Consensus 136 ~~~A~~~~~~~~~~~~ 151 (965)
|++|...+..+.+.+.
T Consensus 198 ~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDY 213 (377)
T ss_pred hHHHHHHHHHHHhccc
Confidence 9999999999988654
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.91 E-value=2.3 Score=44.37 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=101.6
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--------chHHHHHHHHH
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF--------DNFVCSSVVSG 93 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~~~l~~~ 93 (965)
.+..+...+.+..+.+|...+ .++.....-.+.+...|++++|.+.+-..--... |. ....|+.++.+
T Consensus 217 lq~~~Lk~~krevK~vmn~a~--~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~--~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQ--DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKE--AGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcC--CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccc--cCccccchhhhheeecCcceE
Confidence 344456667777777776654 4555556666778889999999999875422111 22 33457899999
Q ss_pred HHhcCChhhHHHHHHHHHHc------CCCCCC----------HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhh
Q 046930 94 FCKIGKPELAIGFFENAISL------GALKPN----------VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVF 157 (965)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~------~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (965)
..+.|.|.-+..+|.++++. .|+.|. -...+..+-.|...|+.-.|.++|.+....
T Consensus 293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-------- 364 (696)
T KOG2471|consen 293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-------- 364 (696)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH--------
Confidence 99999999999999999851 223332 234456677789999999999999998763
Q ss_pred hhhHHhhhhhhcCCCCCHHHHHHHHHHHHh
Q 046930 158 YSCWICGQMVDKGIKPDTVSYTILLDGFSK 187 (965)
Q Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 187 (965)
...++..|..|..+|.-
T Consensus 365 -------------fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 -------------FHRNPRLWLRLAECCIM 381 (696)
T ss_pred -------------HhcCcHHHHHHHHHHHH
Confidence 35789999999998864
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.86 E-value=18 Score=32.79 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=54.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 195 VGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
.+.+..+.+.+++|+...+..++..+.+.|++... .++...++-+|.......+-.+ .+.+..+.++--+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 34445555666777777777777777777765543 3344444455544444333222 23344455555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHcC
Q 046930 275 GIKPSIVTYNTIINGLCKVGRTSDAEEVSKG 305 (965)
Q Consensus 275 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 305 (965)
=...+..++..+...|++-+|.+..+.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 111344555566667777777666543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=88.70 E-value=14 Score=31.39 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 046930 625 STIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM 687 (965)
Q Consensus 625 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 687 (965)
...+..+.+.|+-|.-.+++.++.+. -.+++.....+..+|.+.|+..++-+++.++.+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455666777777777777776642 345666677777777777777777777777777664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.59 Score=28.07 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=25.6
Q ss_pred hhHHHHhhhccchHHHHHHHHHHHhcccccC
Q 046930 934 CYSKVASFCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 934 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
++.++..|...|++++|+..++++++..|++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 3444444999999999999999999998864
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.08 E-value=6 Score=36.65 Aligned_cols=77 Identities=13% Similarity=0.018 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCCCHhhHHHHHHHHHhcCChhHH
Q 046930 62 NMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGA--LKPNVVSYTSLVIALCMLGRVNEV 139 (965)
Q Consensus 62 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 139 (965)
.-+.|...|-.+...+. -.+++....++..|. ..+.++|++++-++++... -.+|+..+..++.++.+.|+++.|
T Consensus 121 ~d~~A~~~fL~~E~~~~--l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPE--LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44678888888776665 567888888887776 6799999999999997642 146788999999999999999988
Q ss_pred HH
Q 046930 140 NE 141 (965)
Q Consensus 140 ~~ 141 (965)
.-
T Consensus 198 Yi 199 (203)
T PF11207_consen 198 YI 199 (203)
T ss_pred hh
Confidence 64
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.08 E-value=41 Score=36.01 Aligned_cols=199 Identities=11% Similarity=0.129 Sum_probs=130.7
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHH
Q 046930 617 PCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYAT 696 (965)
Q Consensus 617 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 696 (965)
.+-|.....+++..+..+..+.-...+-.+|..-| -+-..|..++.+|... ..++-..+|.++.+..+ .|...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 34466677788888888888888888888888864 3778889999999887 67888899998888653 33444555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCC---C---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCChhHHHHHHH
Q 046930 697 LIYNLCKEGQLLDAKKLFDRMVLKGFKP---S---TRIYNSFIDGYCKFGQLEEAFKFLHDLKIN-CLEPDKFTVSAVIN 769 (965)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~ 769 (965)
|+..|.+ ++.+.+..+|.+++.. +-| + ...|.-|... -..+.|....+..++.+. |..--.+.+.-+-.
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 6665555 8889999999988864 222 2 2244444321 134667777777777654 22233455555666
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhc--------------------CCCHHHHHHHHHHHHh
Q 046930 770 GFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCT--------------------KGRMEEARSILREMLQ 824 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--------------------~g~~~eA~~~~~~~~~ 824 (965)
-|....++.+|+++...+++.. ..|......++..+.. -.++.++..-|+..+-
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~ 287 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD-EKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMH 287 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhe
Confidence 6778889999999988775532 2233333334444332 3456677777766653
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.31 E-value=1.2 Score=29.09 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 797 LGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 797 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
.++..|+..|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45788999999999999999999998874
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.25 E-value=0.97 Score=47.25 Aligned_cols=103 Identities=12% Similarity=0.019 Sum_probs=83.2
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
+..+ ...++|+.|+..|.++++.. +..+..+..-+.++.+.+++..|+.-+..+++.+ |....+|...+.++.+
T Consensus 11 an~~-l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 11 ANEA-LKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYIKAYVRRGTAVMA 84 (476)
T ss_pred Hhhh-cccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhhheeeeccHHHHh
Confidence 4444 57789999999999999865 3345556666678999999999999999999999 7888999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 97 IGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.+++-+|+..|+...... |+-......+.
T Consensus 85 l~~~~~A~~~l~~~~~l~---Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLA---PNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHHHHhhhcC---cCcHHHHHHHH
Confidence 999999999999998854 45444444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.12 E-value=5.2 Score=38.66 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=49.3
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD 244 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 244 (965)
.|.+.|++.|..+|+.|++++-+.. +.|. ..+.....-|= .+-+=+++++++|...|+.||
T Consensus 97 ~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPd 157 (406)
T KOG3941|consen 97 YMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPD 157 (406)
T ss_pred HHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCc
Confidence 6777888888888888887664321 1221 11111111121 123447788999999999999
Q ss_pred HhHHHHHHHHHHhcCC
Q 046930 245 EFVYATLIDGVCRRGD 260 (965)
Q Consensus 245 ~~~~~~l~~~~~~~g~ 260 (965)
..+-..|+.+|.+.+-
T Consensus 158 kE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 158 KEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHhccccc
Confidence 9998888888876554
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.83 E-value=0.41 Score=47.40 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=82.0
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
...|.++.|+..|..++... ++....+..-..++.+.+++..|++-++.++..+ |....-|-..+.+..-.|+++
T Consensus 125 ln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein---~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN---PDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred hcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccC---cccccccchhhHHHHHhhchH
Confidence 47899999999999998765 5677778888889999999999999999999999 777788888888889999999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhH
Q 046930 102 LAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+|...|..+.+.+ +.+....|
T Consensus 200 ~aa~dl~~a~kld-~dE~~~a~ 220 (377)
T KOG1308|consen 200 EAAHDLALACKLD-YDEANSAT 220 (377)
T ss_pred HHHHHHHHHHhcc-ccHHHHHH
Confidence 9999999999876 44444444
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=7.4 Score=38.68 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
...+-.+|.+.++++.|+.+.+.++... |.++.-+...|-+|.+.|.+..|..-++..++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD---PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 3444555666667777777777666666 5666666666666667777776666666666554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.16 E-value=1.5 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAIS 112 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 112 (965)
.+++.++..|...|++++|+.++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777764
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=41 Score=34.00 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=7.3
Q ss_pred CHhHHHHHHHHHHhcCC
Q 046930 244 DEFVYATLIDGVCRRGD 260 (965)
Q Consensus 244 ~~~~~~~l~~~~~~~g~ 260 (965)
+..+....+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33344444444444444
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=85.96 E-value=7.6 Score=37.19 Aligned_cols=102 Identities=17% Similarity=0.014 Sum_probs=55.0
Q ss_pred hcCCHHHHHHHHHHhHh----CCCCCChH--HHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc-ccccHH
Q 046930 773 QKGDMEGALGFFLDFNT----KGVSPDFL--GFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV-ESESVL 845 (965)
Q Consensus 773 ~~g~~~~A~~~~~~~~~----~~~~p~~~--~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 845 (965)
....+++|++.|.-++- .+-.|... .+..+++.|...|+.+....+++++++.....-..+..+..+ +...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34455666665554321 23344432 266788888888885555555554444322111111111112 222333
Q ss_pred HHHH-HhhhcCcHHHHHHHHHHHhhccCCC
Q 046930 846 NFLI-SLCEQGSILEAIAILDEIGYMLFPT 874 (965)
Q Consensus 846 ~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~ 874 (965)
-|++ ...+.|++++|.+.+.++...+...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3444 4668999999999999987664433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.87 E-value=69 Score=36.43 Aligned_cols=76 Identities=11% Similarity=0.159 Sum_probs=44.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRV 136 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (965)
+.+.+.+++|+..-+.....-+.+ .-...+...+.-+...|++++|-...-++. ..+...|......+...++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-----gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERF-VIKKVGKTYIDHLLFEGKYDEAASLCPKML-----GNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCcccc-chHHHHHHHHHHHHhcchHHHHHhhhHHHh-----cchHHHHHHHHHHhcccccc
Confidence 445667777776665443322100 134456666777777777777777777765 24555666666656555554
Q ss_pred hH
Q 046930 137 NE 138 (965)
Q Consensus 137 ~~ 138 (965)
..
T Consensus 440 ~~ 441 (846)
T KOG2066|consen 440 TD 441 (846)
T ss_pred ch
Confidence 43
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.68 E-value=76 Score=36.68 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhCCCCCC--HHhHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCC---chHHHHHHHHHHHhcCChhhH
Q 046930 30 ALLVLKDCLRNHGTLPS--SFTFCSLVYSFC-SQGNMSRAVEVLELMSDENVKYPF---DNFVCSSVVSGFCKIGKPELA 103 (965)
Q Consensus 30 A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 103 (965)
|++.++-+++....+|. ..+...++.++. ...+++.|+..+++.+.....+.- ...+-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 56777777765555553 345777888876 678999999999998776532011 1234456778888888777 9
Q ss_pred HHHHHHHHHcCC-CCCCHhhHH-HHH--HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHH
Q 046930 104 IGFFENAISLGA-LKPNVVSYT-SLV--IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYT 179 (965)
Q Consensus 104 ~~~~~~~~~~~~-~~~~~~~~~-~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 179 (965)
....++.++.-. .+.+...|. .++ ..+...+++..|.+.++.+....- ....|-..++.
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~-----------------~~~d~~~~v~~ 181 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN-----------------QRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh-----------------hcCCHHHHHHH
Confidence 999999886431 112222222 223 222234799999999998876421 11123344444
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHHHCC--C-------CCCHHHHHHHHHH--HHhcCChHHHHHHHHHHH
Q 046930 180 ILLDGF--SKEGTIEKAVGILNKMIEDR--L-------RPNLITYTAIIFG--FCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 180 ~l~~~~--~~~g~~~~A~~~~~~~~~~~--~-------~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 237 (965)
.++.+. .+.+..+++.+..+++.... + .|-..+|..++.. +...|+++.+...++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444443 34566777777777764321 1 2345566666554 456677777777666653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.38 E-value=54 Score=34.70 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046930 394 GRIEEALEIFDELRRMSISSVACYNCIINGLC 425 (965)
Q Consensus 394 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (965)
+..+++...|.++.+..+....+|..++..+.
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 67778888888888877777777777766654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.36 E-value=25 Score=30.85 Aligned_cols=51 Identities=20% Similarity=0.035 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046930 393 LGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEK 443 (965)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (965)
.++.+++..+++.+.-..|.....-..-+..+...|++++|+.+|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444445555554444444444443333444444455555555555554443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.80 E-value=27 Score=30.69 Aligned_cols=50 Identities=14% Similarity=-0.024 Sum_probs=20.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 97 IGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.++++++..+++.+.-.. |.....-..-+..+...|+|++|+.+|+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 444444444444444432 12222222223334444555555555544443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.36 E-value=38 Score=32.19 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=17.2
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhc
Q 046930 491 ISFLCKRGSSEVASELYMFMRKR 513 (965)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~~~ 513 (965)
...-...+++.+|+.+|+++...
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678899999999987664
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.20 E-value=12 Score=34.77 Aligned_cols=74 Identities=20% Similarity=0.121 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHHH
Q 046930 672 FVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLK---GFKPSTRIYNSFIDGYCKFGQLEEAF 746 (965)
Q Consensus 672 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 746 (965)
-++|...|-++...+.--++.....|+..|. ..+.+++++++.++++. +-.+|+..+.+|+.++.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3566666666666554445555555555444 55667777777777653 22556777777777777777777664
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.10 E-value=2.4 Score=29.52 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 799 FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 799 ~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
++.++.++.+.|++++|..+.+.+++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55688999999999999999999999
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.99 E-value=10 Score=35.99 Aligned_cols=99 Identities=9% Similarity=-0.063 Sum_probs=79.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh-------cCCCCCCch----------HHHHHHHHHHHhcCChhhHHHHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSD-------ENVKYPFDN----------FVCSSVVSGFCKIGKPELAIGFFENA 110 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~ 110 (965)
.+...-++-+.+.|++.+|...|..++. +.. |.++ ..+.....+++..|+|-++++.-..+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEk--P~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEK--PGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccC--CCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3556667778889999998888876543 121 3333 34566778899999999999999999
Q ss_pred HHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 111 ISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
+... |.|+.+|..-+.+.+..-+.++|..-|.++++..
T Consensus 257 L~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 257 LRHH--PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HhcC--CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 9877 8889999999999999999999999999999853
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.73 E-value=1.6e+02 Score=38.75 Aligned_cols=123 Identities=7% Similarity=-0.041 Sum_probs=82.1
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHH
Q 046930 315 TLLHGYIEEDNVNGILETKQRLEEAGIQ--MDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCK 392 (965)
Q Consensus 315 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (965)
.+..+-.+.+.+.+|+..++.-.....+ .....+..+...|...++++...-+...... .|+ +...+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 3444556777788888887774111111 1123444455588888888887777664111 122 2234445678
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046930 393 LGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEK 443 (965)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (965)
.|++..|...|+.+.+.+|+....++.++......|.++..+...+-....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~ 1512 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN 1512 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc
Confidence 899999999999999998888888888888888888888888766665543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=83.62 E-value=9.2 Score=36.63 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHhHhCCCCC----C-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 763 TVSAVINGFCQKGD-------MEGALGFFLDFNTKGVSP----D-FLGFLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 763 ~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
.+..+++.|...|+ ...|++.|++..+.+-.| + ....+.++....+.|+.++|...|.+++..+.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 44455666655555 345666666665543332 2 23366688888899999999999999998544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.43 E-value=57 Score=33.40 Aligned_cols=115 Identities=15% Similarity=0.090 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC------
Q 046930 636 YVNKALDLCAFAKNKGITVNIVTYNTVIHSLCR----QGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEG------ 705 (965)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 705 (965)
+..+|...|..+.+.|. ......|+..|.. ..+..+|..+|.++.+.|..+...+...+...|..-+
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 45666666665555542 2333334444443 3366666666666666553222222333333333221
Q ss_pred -ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHhhhCC
Q 046930 706 -QLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKF----GQLEEAFKFLHDLKINC 756 (965)
Q Consensus 706 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~ 756 (965)
+...|...|.++...+ +......++..|..- .+..+|...|++..+.|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 2224666666655544 333444444444331 25566666666666543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.95 E-value=78 Score=34.64 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
-.++.+...|+.-+|++.+|...+..++--.+..........++.++.+.|...+|.-++-.+...- |.-..-+..+
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA---~~~t~n~y~l 289 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA---DFFTSNYYTL 289 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC---ccccccceeH
Confidence 3667777888778888888888888877644332334456777888888888888888887666654 3333446778
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
++++...|.+......|+.+.+.+
T Consensus 290 ~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 290 GNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred HHHHHHHhhhhhhhhhhhhhhccC
Confidence 888888888888888888777654
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.82 E-value=14 Score=31.47 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHhcC---CHHHHHHHHHHhHhCCCCCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 758 EPDKFTVSAVINGFCQKG---DMEGALGFFLDFNTKGVSPDF--LGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 758 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.+...+--++.+++.+.. +..+.+.+++++... -.|+. .-.+.|+.++++.|++++++.+.+.+++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 444555556777776554 455678888887642 23432 2255588888888888888888888887
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.47 E-value=1.8 Score=24.78 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCChhhHHHHH
Q 046930 87 CSSVVSGFCKIGKPELAIGFF 107 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~ 107 (965)
...++.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344455555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.22 E-value=18 Score=39.34 Aligned_cols=46 Identities=28% Similarity=0.192 Sum_probs=24.7
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHH
Q 046930 667 CRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMV 718 (965)
Q Consensus 667 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (965)
.+.|+++.|.++..+. .+..-|..|.++..+.|++..|.++|.+..
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 3455555555554433 224455566666666666666666655543
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=82.21 E-value=1.9 Score=27.05 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=22.5
Q ss_pred hhHHHHhhhccchHHHHHHH--HHHHhcccccC
Q 046930 934 CYSKVASFCSKGELQKANKL--MKEMLSSFKED 964 (965)
Q Consensus 934 ~~~~~~~~~~~g~~~~A~~~--~~~~~~~~~~~ 964 (965)
.+.+...++.+|++++|+.. |+-+....|+|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 34454559999999999999 65887777765
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.93 E-value=1.8e+02 Score=38.21 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=95.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNV--VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
.++.+-.+++.|..|+..+++-.... .+.+. ..+..+...|...+++|...-+...-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e-k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~------------------- 1447 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE-KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF------------------- 1447 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-------------------
Confidence 56677788888999999888842111 11222 233444458888888888777765421
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 046930 167 VDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEF 246 (965)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 246 (965)
.+...+. .|-.....|++..|...|+.+.+.++. ...+++-++......|.+...+-..+-..... .+...
T Consensus 1448 ------a~~sl~~-qil~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~ 1518 (2382)
T KOG0890|consen 1448 ------ADPSLYQ-QILEHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVD 1518 (2382)
T ss_pred ------cCccHHH-HHHHHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHH
Confidence 1222222 333455678999999999999887533 46677777777777788887777666555432 33444
Q ss_pred HHHHH-HHHHHhcCCHhHHHHHHH
Q 046930 247 VYATL-IDGVCRRGDLDCAFRLLE 269 (965)
Q Consensus 247 ~~~~l-~~~~~~~g~~~~A~~~~~ 269 (965)
.++++ +.+-.+.++++.....+.
T Consensus 1519 ~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1519 ELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhhcchhhhhhhhh
Confidence 44444 344567788887777665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.86 E-value=1.3e+02 Score=36.38 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--hHHHHHHHH
Q 046930 382 TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVG--MHKIILQAT 459 (965)
Q Consensus 382 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~ 459 (965)
.+...+.-+...+.+++|.-.|+..-+ ...-+.+|...|+|.+|+.+..++.. .-+.. +...+...+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence 344444445556667777666665433 23345666677777777777776642 11111 124455555
Q ss_pred HHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHH
Q 046930 460 FAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMF 509 (965)
Q Consensus 460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (965)
...+..-+|-+++.....- ....+..|++...+++|..+-..
T Consensus 1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 5555555555554443221 12233445666666666655543
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=81.28 E-value=25 Score=29.25 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=35.9
Q ss_pred hHHHHHHHH-HHccCCchHHHHHHHHHHHhCCCCCC----------HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 12 FFDSLIQGF-CIKRNDPEKALLVLKDCLRNHGTLPS----------SFTFCSLVYSFCSQGNMSRAVEVLELM 73 (965)
Q Consensus 12 ~~~~l~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (965)
+|..|..+= -.+.|-|++|...++++|.-+.-.|. ...+..|..++...|+|++++..-+..
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 455555432 13668899999999999976543332 334555666666666666655544443
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.90 E-value=11 Score=29.85 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=32.7
Q ss_pred HHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046930 362 EDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM 409 (965)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (965)
-++.+-+..+...++.|++.+...-+++|-+.+++..|+++|+.+...
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344555555666666777777777777777777777777777766644
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.75 E-value=87 Score=33.71 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 046930 172 KPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFG-FCKKGKLEEAFTVFKKVEDLGLVADEFVYA 249 (965)
Q Consensus 172 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 249 (965)
..|+..|...+.-+.+.+.+.+...+|.+|+...+. ++..|.....- |...-+.+.|..+|....+.+ +.++..|.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~ 178 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWK 178 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHH
Confidence 358899999998888888899999999999886543 45555433333 333334888999998888775 33444443
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.75 E-value=10 Score=37.94 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVK-YPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
|.--++-|.+..+|..|+..|...++.... ...+...|+..+.+-...|+|..|+.-..+++..+ |....++..-..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~--P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK--PTHLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC--cchhhhhhhhhH
Confidence 344455567777777777777776665421 12345566777777777777777777777777755 445556666666
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 046930 129 ALCMLGRVNEVNELFVRME 147 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~ 147 (965)
++....++++|..+.+...
T Consensus 162 c~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 6667777666666555443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=80.62 E-value=14 Score=31.59 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHhcC---CCHHHHHHHHHHHHhcCcchhhhhcccccc--ccccHHHHHHHhhhcCcHHHHHHHHHHH
Q 046930 793 SPDFLGFLYLVKGLCTK---GRMEEARSILREMLQSKSVLELINRVDIEV--ESESVLNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 793 ~p~~~~~~~l~~~~~~~---g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
.+...+-.++++++.+. .+..+.+.+++.+++. .+| ..+.++-|.-++.+.|+|++++.+.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-----------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-----------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-----------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 77778878899999864 4677889999999862 233 4457777888899999999999999987
Q ss_pred hhcc
Q 046930 868 GYML 871 (965)
Q Consensus 868 ~~~~ 871 (965)
....
T Consensus 98 l~~e 101 (149)
T KOG3364|consen 98 LETE 101 (149)
T ss_pred HhhC
Confidence 6553
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.31 E-value=2.6 Score=24.10 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH
Q 046930 799 FLYLVKGLCTKGRMEEARSILR 820 (965)
Q Consensus 799 ~~~l~~~~~~~g~~~eA~~~~~ 820 (965)
...++.++...|++++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456777777777777777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 83.3 bits (204), Expect = 2e-16
Identities = 36/300 (12%), Positives = 86/300 (28%), Gaps = 26/300 (8%)
Query: 116 LKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT 175
L + + ++ + L V K
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG-----------------QRQKRKLLTL 165
Query: 176 VSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAF-TVFK 234
Y ++ G++++G ++ V +L + + L P+L++Y A + ++ + +
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
Query: 235 KVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVG 294
++ GL A L+ R L ++ P V + ++ +
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 295 RTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILET-KQRLEEAGIQMDIVMCNILIK 353
++ + + LH +E + ++ K L ++ L
Sbjct: 286 GRVSYPKLHLPLKTLQCLFEKQLH--MELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343
Query: 354 ALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISS 413
AL A + E + + + C L E + L+ +
Sbjct: 344 QWEK--ALCRALRETKNRLEREVYEGRFSLYPFL---CLLDEREVVRMLLQVLQALPAQG 398
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.2 bits (175), Expect = 5e-13
Identities = 26/190 (13%), Positives = 55/190 (28%), Gaps = 4/190 (2%)
Query: 592 VLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKN-- 649
+L++ S+ + + A L
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 650 -KGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLL 708
K + + YN V+ RQG F E + ++ + P +SYA + + ++ Q
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 709 -DAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAV 767
++ ++M +G K + + L+ K + P S +
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 768 INGFCQKGDM 777
+ K
Sbjct: 278 LRDVYAKDGR 287
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.0 bits (172), Expect = 1e-12
Identities = 33/284 (11%), Positives = 86/284 (30%), Gaps = 9/284 (3%)
Query: 360 ALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM----SISSVA 415
+L+ +A + L ++ A + + ++
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 416 CYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKG-GVGGVLNFVYR 474
YN ++ G + G V + + GL+ + + LQ + G + + +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 475 IENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGK 534
+ ++ + ++S + + ++ + + +L+ + +
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 535 KWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLK 594
+ L L E + L +C+ V L K +K T+ + +
Sbjct: 287 RVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWE 346
Query: 595 KLLKAGSVLDVYKLVMGAEDSL----PCMDVVDYSTIVAALCRE 634
K L +L + P + ++D +V L +
Sbjct: 347 KALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQV 390
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 2e-10
Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 4/150 (2%)
Query: 689 PSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKF 748
P E A L+ + L + + + +F QL A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 749 L---HDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKG 805
L H + +AV+ G+ ++G + + G++PD L + ++
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 806 LCTKGRMEEA-RSILREMLQSKSVLELINR 834
+ + + L +M Q L+ +
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFT 239
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.3 bits (152), Expect = 4e-10
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 3/103 (2%)
Query: 687 MVPSEVSYATLIYNLCKEGQLLDAKKLFDR---MVLKGFKPSTRIYNSFIDGYCKFGQLE 743
+ + QL A L K + +YN+ + G+ + G +
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 744 EAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLD 786
E L +K L PD + +A + ++ G + L+
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.6 bits (145), Expect = 2e-09
Identities = 12/149 (8%), Positives = 37/149 (24%), Gaps = 4/149 (2%)
Query: 651 GITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM---VPSEVSYATLIYNLCKEGQL 707
++ A L + + Y ++ ++G
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 708 LDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAF-KFLHDLKINCLEPDKFTVSA 766
+ + + G P Y + + + Q + L + L+ +
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
Query: 767 VINGFCQKGDMEGALGFFLDFNTKGVSPD 795
+++ + ++ F+ P
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 2e-08
Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 3/136 (2%)
Query: 39 RNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVK-YPFDNFVCSSVVSGFCKI 97
+ + A +L + + K + ++V+ G+ +
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 98 GKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNE-VNELFVRMESEGLKFDVV 156
G + + G L P+++SY + + + + + +M EGLK +
Sbjct: 179 GAFKELVYVLFMVKDAG-LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 157 FYSCWICGQMVDKGIK 172
F + + + +K
Sbjct: 238 FTAVLLSEEDRATVLK 253
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 4e-11
Identities = 108/752 (14%), Positives = 194/752 (25%), Gaps = 283/752 (37%)
Query: 259 GDLDCAFR-LLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLL 317
G+ ++ +L E + N CK D +++ K IL + +
Sbjct: 12 GEHQYQYKDILSVFEDAFVD----------NFDCK-----DVQDMPKSIL----SKEEID 52
Query: 318 HGYIEEDNVNG------ILETKQRLEEAGIQMDIVMCNILIKALFMVGALE-DARALYQA 370
H + +D V+G L +KQ E +Q F+ L + + L
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQ---EEMVQK------------FVEEVLRINYKFLMSP 97
Query: 371 M------PEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGL 424
+ P M + Y D R+ ++F + ++S + Y + L
Sbjct: 98 IKTEQRQPSMM----TRMYIEQRD------RLYNDNQVF---AKYNVSRLQPYLKLRQAL 144
Query: 425 CKSGMVDMATEVFIELN-EKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIY 483
EL K + + G+ G G
Sbjct: 145 L-------------ELRPAKNVLID-GV-----------LGSG----------------- 162
Query: 484 DIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWL-IGPLL 542
K + VA + V Y + +D WL +
Sbjct: 163 ------------K---TWVALD----------VCLS---YKVQCKMDF-KIFWLNLKNCN 193
Query: 543 SMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSV 602
S ++E + Q L N + I + L++LLK
Sbjct: 194 S----PETVLEML------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---- 239
Query: 603 LDVYK---LVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDL-C---AFAKNKGITVN 655
Y+ LV+ +V + A +L C + K +T +
Sbjct: 240 SKPYENCLLVL---L-----NVQNAKAW-----------NAFNLSCKILLTTRFKQVT-D 279
Query: 656 IVTYNTVIHSLCRQGCFVEAFRLFDSLE--------RIDMVPSEVSYATLIYNLCKEGQL 707
++ T H + R +P EV
Sbjct: 280 FLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV---------LTTNPR 328
Query: 708 LDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFG--QLEEAFKFLHDLKINCLEPDKFTVS 765
L S R + D + +L + +N LEP ++
Sbjct: 329 ----------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIE----SSLNVLEPAEY--- 371
Query: 766 AVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ- 824
+K F S+
Sbjct: 372 -------RK--------MFDRL-----------------------------SVFPPSAHI 387
Query: 825 SKSVLELINRVDIEVESESVLNFLI--SLCEQGSILEAIAILDEIGYMLFPTQRFGTDRA 882
+L LI I+ + V+N L SL E+ I+I Y+ + +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--IYLELKVKL---ENE 442
Query: 883 IETQNKLDECESLNAVASVASLSNQQTDS---DVLGRSNYH-----NVEKISKFH----D 930
+ + ++ L D +G +H + E+++ F D
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKNIEHPERMTLFRMVFLD 499
Query: 931 FNFCYSKVASFCSKGELQKANKLMKEMLSSFK 962
F F K+ A+ + L K
Sbjct: 500 FRFLEQKI---RHDSTAWNASGSILNTLQQLK 528
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 4e-11
Identities = 77/553 (13%), Positives = 164/553 (29%), Gaps = 164/553 (29%)
Query: 118 PNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP--DT 175
+ VS T + +L + E+ + FV E L+ + Y ++ + + +P T
Sbjct: 58 KDAVSGTLRLFW-TLLSKQEEMVQKFV---EEVLRIN---YK-FLMSPIKTEQRQPSMMT 109
Query: 176 VSYTILLDG-------FSKEG-TIEKAVGILNKMIEDRLRP--NLITY-------TAIIF 218
Y D F+K + + L + + LRP N++ T +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGKTWVAL 168
Query: 219 GFCKKGKLEEAFT--VF-------KKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLE 269
C K++ +F E + L + + + R D +L
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 270 DMEKKGIKPSI--------------VTYNTIINGL---CKVGRTSDAEEVSKGILGDVVT 312
+ ++ + V N CK+ T+ ++V+ + T
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 313 YSTLLHGY--IEEDNVNGIL-----ETKQRL-EEAGIQMDIVMCNILIKALFMVGAL--- 361
+ +L H + D V +L Q L E + L ++
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--------LTTNPRRLSIIAESIRD 339
Query: 362 -----------------------------EDARALYQAM---PE---------------- 373
+ R ++ + P
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 374 -----MNLVANSVTYSTMIDGYCKLGRIE------EALEIFDELRRMSISSVACYNCIIN 422
M +V YS +++ K I E + + S V YN I
Sbjct: 400 IKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN-IPK 457
Query: 423 GLCKSGMVDMATEVFI-----------ELNEKGL---SLYVGMH----KIILQATFAKGG 464
++ + + E E+ +++ KI +T A
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST-AWNA 516
Query: 465 VGGVLNFVYRIENLRSEI------YDIICNDVISFLCKRGSSEVASE----LYMFMRKRG 514
G +LN + +++ + I Y+ + N ++ FL K + + S+ L + +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 515 SVVTDQSYYSILK 527
+ ++++ + +
Sbjct: 577 EAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 7e-09
Identities = 60/400 (15%), Positives = 117/400 (29%), Gaps = 138/400 (34%)
Query: 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTF-C-SLVYSFCSQGNMSRAVEVLELMSDENVK 79
+K E LLVL + ++N ++F C L+ +R +V + +S
Sbjct: 238 LKSKPYENCLLVLLN-VQNAKAW-NAFNLSCKILL--------TTRFKQVTDFLSAATTT 287
Query: 80 YPF-----DNF-------VCSSVVSGFCKIGK-PE-------LAIGFF------------ 107
+ + + C+ P +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 108 ----------ENAI--SLGALKPNVVS--YTSLVI----------ALCML---GRVNEVN 140
I SL L+P + L + L ++ ++V
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 141 ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVS-YTILLDGFSKEGTIEKAVGILN 199
+ ++ L V+K K T+S +I L+ + E A L+
Sbjct: 406 VVVNKLHKYSL---------------VEKQPKESTISIPSIYLE-LKVKLENEYA---LH 446
Query: 200 KMI------------EDRLRPNLITYTAIIFGFC----KKGKLEEAFTVFKKV-EDLGLV 242
+ I +D + P L Y + K + E T+F+ V D
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMVFLDFR-- 501
Query: 243 ADEFVYATLI-DGV---CRRGDLDCAFRLLEDME--KKGIKPSIVTYNTIINGLCK-VGR 295
F+ + D L+ L+ ++ K I + Y ++N + + +
Sbjct: 502 ---FLEQKIRHDSTAWNASGSILN----TLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 296 TSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQR 335
+ SK Y+ LL + ++ I E +
Sbjct: 555 IEENLICSK--------YTDLLRIALMAED-EAIFEEAHK 585
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 8e-11
Identities = 46/372 (12%), Positives = 99/372 (26%), Gaps = 67/372 (18%)
Query: 93 GFCKIGKPELAIGFFENAISLGALKPN-VVSYTSLVIALCMLGRVNEVNELFVRMESEGL 151
G + + + A L P VV+ S L V + + +
Sbjct: 81 GKQALETVQRLLPVLCQAH---GLTPQQVVAIASHDGGKQALETVQRLLPVLCQ------ 131
Query: 152 KFDVVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNL 210
G+ P+ V+ G T++ + +L + L P
Sbjct: 132 ----------------AHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHG--LTPEQ 173
Query: 211 I-TYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR--GDLDCAFRL 267
+ + G ++ V + L + V A +G ++ + RL
Sbjct: 174 VVAIASNGGGKQALETVQRLLPVLCQAHGL---TPQQVVAIASNGGGKQALETVQ---RL 227
Query: 268 LEDMEK-KGIKP-SIVTYNTIINGLCKVGRTSDAEEVSKGILG----DVVTYSTLLHGYI 321
L + + G+ P +V + G + V G VV +
Sbjct: 228 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA------- 280
Query: 322 EEDNVNGILETKQRLEEA--------GIQMDIVM-CNILIKALFMVGALEDARALYQAMP 372
+ +G + + ++ G+ V+ + ++ +
Sbjct: 281 ---SNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 337
Query: 373 EMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDM 432
+ V ++ G L ++ L + + ++ V G V
Sbjct: 338 GLT-PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQR 396
Query: 433 ATEVF---IELN 441
V L
Sbjct: 397 LLPVLCQAHGLT 408
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 42/368 (11%), Positives = 95/368 (25%), Gaps = 65/368 (17%)
Query: 96 KIGKPELAIGFFENAISLGALKPN-VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFD 154
+ + + A L P VV+ S L V + + +
Sbjct: 152 ALETVQALLPVLCQAH---GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH------- 201
Query: 155 VVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLI-T 212
G+ P V+ G T+++ + +L + L P +
Sbjct: 202 ---------------GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVA 244
Query: 213 YTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFV-YATLIDGVCRRGDLDCAFRLLEDM 271
+ G ++ V + GL + V A+ G + RLL +
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQA--HGLTPQQVVAIASNSGGKQALETVQ---RLLPVL 299
Query: 272 EKK-GIKP-SIVTYNTIINGLCKVGRTSDAEEVSKGILG----DVVTYSTLLHGYIEEDN 325
+ G+ P +V + G + V G VV + +
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA----------S 349
Query: 326 VNGILETKQRLEEA------GIQMD---IVMCNILIKALFMVGALEDARALYQAMPEMNL 376
+G + + ++ + +V + ++ + +
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409
Query: 377 VANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEV 436
V ++ G L ++ L + + ++ V G +
Sbjct: 410 -EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSR 468
Query: 437 F---IELN 441
+
Sbjct: 469 PDPALAAL 476
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 8e-08
Identities = 47/360 (13%), Positives = 99/360 (27%), Gaps = 53/360 (14%)
Query: 97 IGKPELAIGFFENAISLGALKPN-VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155
+ + + A L P+ VV+ S L V + + +
Sbjct: 307 LETVQRLLPVLCQAH---GLTPDQVVAIASHDGGKQALETVQRLLPVLCQ---------- 353
Query: 156 VFYSCWICGQMVDKGIKPDTV-SYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYT 214
G+ PD V + G T+++ + +L + L P+ +
Sbjct: 354 ------------AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPDQVVAI 399
Query: 215 AIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFV-YATLIDGVCRRGDLDCAFRLLEDMEK 273
A G ++ V + GL D+ V A+ G + RLL + +
Sbjct: 400 ASNGGKQALETVQRLLPVLCQA--HGLTPDQVVAIASHDGGKQALETVQ---RLLPVLCQ 454
Query: 274 -KGIKP-SIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILE 331
G+ P +V + G + V G + + G +
Sbjct: 455 THGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIA------SNIGGKQ 508
Query: 332 TKQRLEEA--------GIQ-MDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVT 382
++ G+ +V + ++ + + V
Sbjct: 509 ALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP-DQVVA 567
Query: 383 YSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNE 442
++ G L ++ L + + ++ V I G V V + +
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 6e-07
Identities = 59/379 (15%), Positives = 107/379 (28%), Gaps = 54/379 (14%)
Query: 96 KIGKPELAIGFFENAISLGALKPN-VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFD 154
+ + + A L P+ VV+ S L V + + +
Sbjct: 340 ALETVQRLLPVLCQAH---GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 396
Query: 155 VVFYSCWICGQMVDKG--------------IKPDTV-SYTILLDGFSKEGTIEKAVGILN 199
V S G + PD V + G T+++ + +L
Sbjct: 397 VAIASN---GGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLC 453
Query: 200 KMIEDRLRPNLI-TYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFV-YATLIDGVCR 257
+ L P + + G +++ V + GL D+ V A+ I G
Sbjct: 454 QTHG--LTPAQVVAIASHDGGKQALETVQQLLPVLCQA--HGLTPDQVVAIASNIGGKQA 509
Query: 258 RGDLDCAFRLLEDMEK-KGIKP-SIVTYNTIINGLCKVGRTSDAEEVSKGILG----DVV 311
+ RLL + + G+ P +V + G + V G VV
Sbjct: 510 LATVQ---RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 312 TYSTLLHGYIEEDNVNGILETKQRLEEA-----GIQMDIVM-CNILIKALFMVGALEDAR 365
++ G LET QRL G+ V+ I + ++
Sbjct: 567 AIASNGGGKQA-------LETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLL 619
Query: 366 ALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLC 425
+ + A V ++ G L ++ L + + ++ V G
Sbjct: 620 PVLCQAHGLTP-AQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 678
Query: 426 KSGMVDMATEVF---IELN 441
V V L
Sbjct: 679 ALETVQRLLPVLCQAHGLT 697
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 49/367 (13%), Positives = 102/367 (27%), Gaps = 63/367 (17%)
Query: 96 KIGKPELAIGFFENAISLGALKP-NVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFD 154
+ + + L P VV+ S L V ++ + + + GL D
Sbjct: 441 ALETVQRLLPVLCQTH---GLTPAQVVAIASHDGGKQALETVQQLLPVLCQ--AHGLTPD 495
Query: 155 VVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLI-TY 213
V+ + G T+++ + +L + L P+ +
Sbjct: 496 -------------------QVVAIASNIGGKQALATVQRLLPVLCQAHG--LTPDQVVAI 534
Query: 214 TAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFV-YATLIDGVCRRGDLDCAFRLLEDME 272
+ G ++ V + GL D+ V A+ G + RLL +
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQA--HGLTPDQVVAIASNGGGKQALETVQ---RLLPVLC 589
Query: 273 K-KGIKP-SIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGIL 330
+ G+ +V + I G + V G + + +G
Sbjct: 590 QAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIA------SHDGGK 643
Query: 331 ETKQRLEEA--------GIQMDIVMC-NILIKALFMVGALEDARALY-QAM---PEMNLV 377
+ + ++ G+ D V+ + ++ + QA E
Sbjct: 644 QALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE---- 699
Query: 378 ANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVF 437
V ++ G L ++ L + + ++ V G V V
Sbjct: 700 -QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 758
Query: 438 ---IELN 441
L
Sbjct: 759 CQAHGLT 765
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 49/363 (13%), Positives = 99/363 (27%), Gaps = 57/363 (15%)
Query: 97 IGKPELAIGFFENAISLGALKPN-VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155
+ + + A L P+ VV+ S L V + + +
Sbjct: 408 LETVQRLLPVLCQAH---GLTPDQVVAIASHDGGKQALETVQRLLPVLCQ---------- 454
Query: 156 VFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYT 214
G+ P V+ G T+++ + +L + ++
Sbjct: 455 ------------THGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT-PDQVVAIA 501
Query: 215 AIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR--GDLDCAFRLLEDME 272
+ I G ++ V + GL D V A +G ++ + L +
Sbjct: 502 SNIGGKQALATVQRLLPVLCQA--HGLTPD-QVVAIASNGGGKQALETVQRL---LPVLC 555
Query: 273 K-KGIKP-SIVTYNTIINGLCKVGRTSDAEEVSKGILG----DVVTYSTLLHGYIE-EDN 325
+ G+ P +V + G + V G VV ++ + G E
Sbjct: 556 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETV 615
Query: 326 VNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALY-QAM---PEMNLVANSV 381
+ Q Q +V + ++ + QA P+ V
Sbjct: 616 QRLLPVLCQAHGLTPAQ--VVAIASHDGGKQALETVQRLLPVLCQAHGLTPD-----QVV 668
Query: 382 TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVF---I 438
++ G L ++ L + + ++ V G V V
Sbjct: 669 AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAH 728
Query: 439 ELN 441
L
Sbjct: 729 GLT 731
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 43/415 (10%), Positives = 116/415 (27%), Gaps = 71/415 (17%)
Query: 28 EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87
KA +++ + + S T+ + + + G +S ++ + K+ +
Sbjct: 75 RKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134
Query: 88 SSVVSG-------FCKIGKPELAIGFFENAISLGALKP-NVVSYTSLVIALCMLGRVNEV 139
S + C + E A FE A+ KP N + L IA L
Sbjct: 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPS 191
Query: 140 NELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSY-----TILLDGFSKEGTIEKA 194
+ + ++ + PD L + +
Sbjct: 192 QNAIDPLR-QAIR------------------LNPDNQYLKVLLALKLHKMREEGEEEGEG 232
Query: 195 VGILNKMIEDRLRPNLI-TYTAIIFGFCKKGKLEEAFTVFKKV-----------EDLGLV 242
++ + +E P + + + +K + ++A + KK +G
Sbjct: 233 EKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
Query: 243 ADEFVYATLIDGVCRRGDLDCAFRL----LEDMEK-KGIKPS-IVTYNTIINGLCKVGRT 296
V+ + L + ++K + + + + +
Sbjct: 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350
Query: 297 SDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALF 356
+AE + +T ++ + + E+ I I+ +
Sbjct: 351 EEAEYYFQKEFSKELTPVAKQLLHL---RYGNFQLYQMKCEDKAIHH-------FIEGVK 400
Query: 357 MVGALEDARALYQAMPEMNLVA------NSVTYSTMIDGYCKLGRIEEALEIFDE 405
+ + + + ++ + +S + ++++A E +
Sbjct: 401 INQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 42/399 (10%), Positives = 109/399 (27%), Gaps = 79/399 (19%)
Query: 94 FCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKF 153
+ + + A ++ A+ + +++ +L E + + S K
Sbjct: 210 YTNLSNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266
Query: 154 DVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITY 213
D F Y + L+ S E + +A L+ + L +
Sbjct: 267 DAAFLRSL----------------YMLKLNKTSHEDELRRAEDYLSS--INGLEKSSDLL 308
Query: 214 TAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD-EFVYATLIDGVC--RRGDLDCAFRLLED 270
+ + + + K+ L D + + G+ + + + D
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKI----LEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364
Query: 271 MEKKGIKP-SIVTYNTIINGLCKVGRTSDAEEV-SKGIL---GDVVTYSTLLHGYIEEDN 325
+ P VT+ + V + S+A SK + H + E
Sbjct: 365 LVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422
Query: 326 VNG------------------------ILETKQRLEEA------GIQMD----IVMCNIL 351
+ + A + +++ +
Sbjct: 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482
Query: 352 IKALFMVGALEDARALYQ---AMPEMNLVANS---VTYSTMIDGYCKLGRIEEALEIFDE 405
+ F ++ A +Q + + T++ + Y KL + A++ ++
Sbjct: 483 V-VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541
Query: 406 LRRMSISSVACYNCIINGLCKSGMVDMATEVF---IELN 441
+S + + I + +A + ++
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 61/391 (15%), Positives = 128/391 (32%), Gaps = 107/391 (27%)
Query: 94 FCKIGKPELAIGFFENAISLGALKPNVV-SYTSLVIALCMLGRVNEVNELFVRMESEGLK 152
+ + + + F AI P + +Y++L G++ E E + L+
Sbjct: 43 HFQCRRLDRSAHFSTLAI---KQNPLLAEAYSNLGNVYKERGQLQEAIEHY----RHALR 95
Query: 153 FDVVFYSCWICGQMVDKGIKPDTV-SYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLI 211
+KPD + Y L G +E AV ++ P+L
Sbjct: 96 ------------------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLY 135
Query: 212 -TYTAIIFGFCKKGKLEEAFTVFKKV-----------EDLGLVADEFVYATLIDGVCRRG 259
+ + G+LEEA + K +LG V + +G
Sbjct: 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA------------QG 183
Query: 260 DLDCAFRLLEDMEKK-GIKPSIV-TYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLL 317
++ A + EK + P+ + Y + N L + A Y L
Sbjct: 184 EIWLA---IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA----------YLRAL 230
Query: 318 HGYIEEDNVN------GILETKQRLEEAGIQMDIVMCN--ILIK------------ALFM 357
+ ++ + + ++ A I I ++ AL
Sbjct: 231 S--LSPNHAVVHGNLACVYYEQGLIDLA-----IDTYRRAIELQPHFPDAYCNLANALKE 283
Query: 358 VGALEDARALY-QAM---PEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISS 413
G++ +A Y A+ P ++ + + + + + G IEEA+ ++ + +
Sbjct: 284 KGSVAEAEDCYNTALRLCPT-----HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338
Query: 414 VACYNCIINGLCKSGMVDMATEVF---IELN 441
A ++ + + L + G + A + I ++
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 8e-04
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 334 QRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANS---VTYSTMIDG- 389
+ L IV ++L + L G L + AL Q +M + +S +
Sbjct: 42 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101
Query: 390 -YCKLGRIEEALEIFDELRRM 409
G ++ A E ++ ++
Sbjct: 102 ILFAQGFLQTAWETQEKAFQL 122
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 965 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.94 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.65 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.59 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.59 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.54 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.54 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.49 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.48 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.46 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.44 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.38 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.34 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.33 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.32 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.32 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.31 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.3 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.29 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.29 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.27 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.26 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.22 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.21 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.21 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.19 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.18 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.18 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.16 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.13 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.13 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.12 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.11 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.09 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.06 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.05 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.02 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.98 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.96 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.95 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.94 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.94 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.93 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.93 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.92 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.92 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.92 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.92 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.91 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.91 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.91 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.9 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.9 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.89 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.88 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.88 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.88 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.86 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.85 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.85 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.84 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.84 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.83 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.83 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.82 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.82 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.81 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.81 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.81 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.81 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.8 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.79 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.77 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.75 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.74 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.72 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.7 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.7 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.7 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.69 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.69 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.68 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.67 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.67 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.65 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.64 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.62 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.62 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.61 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.58 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.57 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.57 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.57 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.56 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.55 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.55 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.55 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.5 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.49 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.46 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.46 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.45 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.45 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.43 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.41 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.39 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.39 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.34 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.34 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.31 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.28 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.27 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.25 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.21 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.17 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.13 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.12 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.09 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.07 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.05 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.01 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.88 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.84 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.67 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.59 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.55 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.53 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.51 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.41 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.23 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.22 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.21 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.16 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.91 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.91 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.8 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.79 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.26 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.18 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.01 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.93 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.85 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.64 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.62 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.24 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.14 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.74 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.99 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.78 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.39 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.87 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.58 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.21 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.0 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.68 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.31 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.08 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.79 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.84 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.38 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.71 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.19 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.99 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.41 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.15 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.72 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 83.39 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.13 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.56 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-38 Score=362.62 Aligned_cols=487 Identities=11% Similarity=-0.006 Sum_probs=368.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLI 252 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 252 (965)
+++..|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56778888888888888888888888888854 457788888888888888888888888887644 56778888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHH
Q 046930 253 DGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILET 332 (965)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (965)
.+|.+.|++++|.++|+++... +.. ...+...+..+ .+.+.+..+|..++.+|.+.|++++|++.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPF----RKD-----EKNANKLLMQD------GGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTT----C---------------CCC------SSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCc----ccc-----ccccccccccc------cccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888888753221 100 11111111111 12345678888888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 046930 333 KQRLEEAGIQMDIVMCNILIKALFMVGALEDAR--AL-YQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRM 409 (965)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (965)
|+++.+.++ .+...+..+...+...+..+.+. .+ +..+...+..+...++..++..|.+.|++++|+++|+++.+.
T Consensus 223 ~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 223 YKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 999888753 34556666655444333222221 11 444444443344556677788888899999999999888776
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHH
Q 046930 410 SISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICND 489 (965)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 489 (965)
+++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+.. ++..
T Consensus 302 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-----------------------------------~~~~ 344 (597)
T 2xpi_A 302 -EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLD-----------------------------------VYPL 344 (597)
T ss_dssp -GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCT-----------------------------------THHH
T ss_pred -CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHH-----------------------------------HHHH
Confidence 5788899999999999999999999999988753 12222 3334
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcH
Q 046930 490 VISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDV 569 (965)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (965)
++..+.+.|++++|..+++.+.+..
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------------------------------- 369 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRH------------------------------------------------------- 369 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhC-------------------------------------------------------
Confidence 4455677788888888887776522
Q ss_pred HHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046930 570 TNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKN 649 (965)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 649 (965)
|.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 370 ------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 370 ------------------------------------------------PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp ------------------------------------------------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34677888888999999999999999998887
Q ss_pred cCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhH
Q 046930 650 KGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIY 729 (965)
Q Consensus 650 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 729 (965)
..+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|+++|+++++.. +.+..+|
T Consensus 402 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 478 (597)
T 2xpi_A 402 MDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLL 478 (597)
T ss_dssp HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 643 367789999999999999999999999988864 3467888889999999999999999999998753 5578889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC-ChHHHHHH
Q 046930 730 NSFIDGYCKFGQLEEAFKFLHDLKIN----CLEPD--KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP-DFLGFLYL 802 (965)
Q Consensus 730 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 802 (965)
+.++.+|.+.|++++|++.|+++.+. +..|+ ..+|..++.+|.+.|++++|++.|+++.+. .| +...+..+
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 556 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 99999999999999999999998775 55776 578899999999999999999999998763 45 45568889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHh
Q 046930 803 VKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 803 ~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+.+|.+.|++++|.++|+++++
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999988
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=359.50 Aligned_cols=515 Identities=11% Similarity=-0.005 Sum_probs=316.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh
Q 046930 58 CSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN 137 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (965)
...|.+..+...+..+. .++...|..++..|.+.|++++|+.+|++++.. .|+..++..++.+|.+.|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~ 134 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS------LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYA 134 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHH
T ss_pred cccCccCCCCCccccch------HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHH
Confidence 34455555555544321 356678888888888899999999999888864 367778888888888889999
Q ss_pred HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 138 EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAII 217 (965)
Q Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 217 (965)
+|+.+|+++... ++++.+++.++.+|.+.|++++|.++|+++... +.. .
T Consensus 135 ~A~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-----~ 183 (597)
T 2xpi_A 135 RAKCLLTKEDLY----------------------NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF----RKD-----E 183 (597)
T ss_dssp HHHHHHHHTCGG----------------------GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT----C--------
T ss_pred HHHHHHHHHhcc----------------------ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc----ccc-----c
Confidence 988888887542 367888888888888889998888888853211 100 0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 046930 218 FGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTS 297 (965)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 297 (965)
.++.+.++ ...+.+.+..+|+.++.+|.+.|++++|.++|++|.+.++. +...+..++..+...+..+
T Consensus 184 ~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 184 KNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp -------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHH
T ss_pred cccccccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhH
Confidence 00000000 01122334445555555555555555555555555544221 3333333333222221111
Q ss_pred hHHHH---Hc-----CCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046930 298 DAEEV---SK-----GILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQ 369 (965)
Q Consensus 298 ~a~~~---~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 369 (965)
.+... +. .......++..++..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|..+|+
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITT 329 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 11100 00 00112233445566777788888888888887665 5788999999999999999999999999
Q ss_pred HchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 046930 370 AMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYV 449 (965)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 449 (965)
++.+.+ +.+..++..++.++.+.|++++|..+++++.+..|.+..++..++.+|.+.|++++|..+|+++.+. .|
T Consensus 330 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-- 404 (597)
T 2xpi_A 330 KILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DP-- 404 (597)
T ss_dssp HHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--
T ss_pred HHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CC--
Confidence 998765 3466788899999999999999999999999888889999999999999999999999999998764 12
Q ss_pred HhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHH
Q 046930 450 GMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGL 529 (965)
Q Consensus 450 ~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (965)
T Consensus 405 -------------------------------------------------------------------------------- 404 (597)
T 2xpi_A 405 -------------------------------------------------------------------------------- 404 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHH
Q 046930 530 DNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLV 609 (965)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 609 (965)
T Consensus 405 -------------------------------------------------------------------------------- 404 (597)
T 2xpi_A 405 -------------------------------------------------------------------------------- 404 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 046930 610 MGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVP 689 (965)
Q Consensus 610 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 689 (965)
.+..+|+.++.+|.+.|++++|+++|+++.+.++ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.
T Consensus 405 ---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 405 ---------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp ---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 1334444555555555555555555555554422 244555555555555555556655555555533 22
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-Chh
Q 046930 690 SEVSYATLIYNLCKEGQLLDAKKLFDRMVLK----GFKPS--TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKF 762 (965)
Q Consensus 690 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 762 (965)
+..+|+.++.+|.+.|++++|+++|+++++. +..|+ ..+|..++.+|.+.|++++|+..++++.+. .| +..
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 551 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDAN 551 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChH
Confidence 3555555666666666666666666655543 34454 456666666666666666666666666653 33 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHH
Q 046930 763 TVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGL 806 (965)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~ 806 (965)
+|..++.+|...|++++|++.|+++++ +.|+... +..++.+|
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 666666666666666666666666654 4554433 44444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-28 Score=267.18 Aligned_cols=377 Identities=17% Similarity=0.091 Sum_probs=274.0
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK 96 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (965)
+..+ .+.|++++|+..+..+++.. |.+..++..++.++...|++++|...++.+++.+ |.++.+|..++.+|.+
T Consensus 6 a~~~-~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~---p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHRE-YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN---PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHH-HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHH-HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 3444 67899999999999988866 5567778888888999999999999999999888 7888999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHH
Q 046930 97 IGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTV 176 (965)
Q Consensus 97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 176 (965)
.|++++|+..|++++... |.+..+|..++.++...|++++|+..|+++++.++ .+..
T Consensus 80 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~ 136 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP---------------------DLYC 136 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT---------------------TCTH
T ss_pred CCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CcHH
Confidence 999999999999999876 66777899999999999999999999999887532 3456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 046930 177 SYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVC 256 (965)
Q Consensus 177 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (965)
++..+...+...|++++|.+.|+++++..+. +..+|..+..++...|++++|+..|+++.+.+ +.+...+..+...+.
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 7778888888999999999999999887544 67888899999999999999999999998876 556778888888899
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcCChhHHHHH
Q 046930 257 RRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEEDNVNGILET 332 (965)
Q Consensus 257 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (965)
..|++++|...+++.....+. +..++..++.++...|++++|...++.. |.+..++..++..+...|++++|+..
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999888876332 4667777777777777777766665422 33444555555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 046930 333 KQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSIS 412 (965)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 412 (965)
++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+..++..++.++.+.|++++|+..|+++.+..|.
T Consensus 294 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55555443 3344455555555555555555555555554432 233444555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhc
Q 046930 413 SVACYNCIINGLCKS 427 (965)
Q Consensus 413 ~~~~~~~l~~~~~~~ 427 (965)
+..+|..++..+...
T Consensus 372 ~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 372 FADAYSNMGNTLKEM 386 (388)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHhHHHHHHHc
Confidence 555555555544443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-28 Score=261.95 Aligned_cols=360 Identities=16% Similarity=0.066 Sum_probs=304.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
++..+.+.|++++|+..+..+.+.+ |.+..++..++..+...|++++|...++++++.. |.+..+|..++.++.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHH
Confidence 4667889999999999999999998 8889999999999999999999999999999876 7888999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 046930 133 LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLIT 212 (965)
Q Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (965)
.|++++|+..|+++++.. +.+..+|..++.++.+.|++++|.+.|+++++..+. +...
T Consensus 80 ~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 137 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK---------------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCV 137 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHH
T ss_pred CCCHHHHHHHHHHHHHcC---------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHH
Confidence 999999999999998753 245778999999999999999999999999987544 5677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046930 213 YTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK 292 (965)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 292 (965)
+..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+..
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 8888999999999999999999999875 557889999999999999999999999999987543 57788888888888
Q ss_pred cCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046930 293 VGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALY 368 (965)
Q Consensus 293 ~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 368 (965)
.|++++|...+... |.+..++..++.++...|++++|+..++++.+.. +.+..++..++..+.+.|++++|...|
T Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99988888876532 4567777778888888888888888888887764 335667777788888888888888888
Q ss_pred HHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046930 369 QAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEK 443 (965)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (965)
+++.+.. +.+..++..++..+...|++++|+..++++.+..|.+..++..++.++.+.|++++|+..++++++.
T Consensus 295 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 295 NTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8877654 4566777778888888888888888888888777777788888888888888888888888887764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-20 Score=211.98 Aligned_cols=754 Identities=12% Similarity=0.100 Sum_probs=450.3
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.++.+.+.++ .+.|+++.++..-+ ..|..|| |..+++.+.+. ++++|.+.-..+.+.. || .-....+
T Consensus 483 ~~~~Kvi~~l-~~~gq~~ki~~Y~~----~~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~---~p-~~d~~~i 549 (1630)
T 1xi4_A 483 NVPNKVIQCF-AETGQVQKIVLYAK----KVGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE---EP-LADITQI 549 (1630)
T ss_pred CCcHHHHHHH-HHhCCHHHHHHHHh----ccCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCC---CC-ccCHHHH
Confidence 3566778887 57889888877633 3455444 44566666654 6788888777776664 32 2335678
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCC-CHh-----------------------------hHHHHHHHHHhcCChhHHH
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKP-NVV-----------------------------SYTSLVIALCMLGRVNEVN 140 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~-----------------------------~~~~l~~~~~~~~~~~~A~ 140 (965)
...+...+...++..++..+++.+ .| +.. -+..++..|-+.|-++.|+
T Consensus 550 vd~f~~~~~iq~~t~fLld~lk~n--~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qral 627 (1630)
T 1xi4_A 550 VDVFMEYNLIQQCTAFLLDALKNN--RPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRAL 627 (1630)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhCC--ChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHH
Confidence 889999999999999998888765 33 111 2345666667777777777
Q ss_pred HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046930 141 ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGF 220 (965)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 220 (965)
+.|..+... +..+.. ....++.. |+ .|...=..+.+++++++|+..+++-|......+..-|
T Consensus 628 e~y~d~~di-------------kR~~~~-~~~~~~~~---l~-~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky 689 (1630)
T 1xi4_A 628 EHFTDLYDI-------------KRAVVH-THLLNPEW---LV-NYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKY 689 (1630)
T ss_pred HhcCCHHHH-------------HHHhhc-cCcCCHHH---HH-HHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHH
Confidence 776544321 000000 01111111 22 2333356688888888888755444433322222222
Q ss_pred HhcCChHHHHHHHHHHHH-----------cCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH------------HHCCCC
Q 046930 221 CKKGKLEEAFTVFKKVED-----------LGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM------------EKKGIK 277 (965)
Q Consensus 221 ~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------~~~g~~ 277 (965)
...=-.+.-+++|++... .+...|+.+....|.++++.|++.+.+++.++- .+...
T Consensus 690 ~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl- 768 (1630)
T 1xi4_A 690 HEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL- 768 (1630)
T ss_pred HhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCC-
Confidence 222223333333333221 123557778888899999988888887776541 11111
Q ss_pred CCHH---------H-HHHHHHHHHhcCCcchHHHH-HcCCCC---------------CHHHHHHHHHHhhhcCChhHHH-
Q 046930 278 PSIV---------T-YNTIINGLCKVGRTSDAEEV-SKGILG---------------DVVTYSTLLHGYIEEDNVNGIL- 330 (965)
Q Consensus 278 ~~~~---------~-~~~l~~~~~~~g~~~~a~~~-~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~- 330 (965)
||.. . ...|+.-+.+++.. +-+++ ..++.| +......++......-..++-.
T Consensus 769 ~d~~pli~vCdr~~~v~~l~~yLy~n~~~-~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~ 847 (1630)
T 1xi4_A 769 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQ-KYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVA 847 (1630)
T ss_pred CCCCCceeeccccccHHHHHHHHHhcCch-hHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHH
Confidence 1110 0 11222222222222 22222 222211 2222333333222222222222
Q ss_pred ------------HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH---------HHHHHchhCCCcccH--------
Q 046930 331 ------------ETKQRLEEAGIQMDIVMCNILIKALFMVGA-LEDAR---------ALYQAMPEMNLVANS-------- 380 (965)
Q Consensus 331 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~---------~~~~~~~~~~~~~~~-------- 380 (965)
-.++.-...| ..++.++|+|+..|...++ .+.-+ .+=+-..+++ |..
T Consensus 848 ~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rD--p~la~iay~~g 924 (1630)
T 1xi4_A 848 EVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRD--PHLACVAYERG 924 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcC--cchHHHHhccc
Confidence 2233334444 5688899999999986543 33211 0111111111 211
Q ss_pred -------------HHHHHHHHHHHHcCCHHH---H--------HHHHHHHHhc---CCCCHHHHHHHHHHHHhcCChHHH
Q 046930 381 -------------VTYSTMIDGYCKLGRIEE---A--------LEIFDELRRM---SISSVACYNCIINGLCKSGMVDMA 433 (965)
Q Consensus 381 -------------~~~~~l~~~~~~~~~~~~---A--------~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 433 (965)
..|-...+-+.+..+.+- . ..+.+..... ...++.-......+|...|.+.+|
T Consensus 925 ~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~Ea 1004 (1630)
T 1xi4_A 925 QCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNEL 1004 (1630)
T ss_pred CCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHH
Confidence 112222333333333211 1 1122222221 122455566778888999999999
Q ss_pred HHHHHHHHHCCC--CCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 046930 434 TEVFIELNEKGL--SLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMR 511 (965)
Q Consensus 434 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (965)
++++++++-.+. .-+...-+.++.+..+. +.....+.+.++.... ...++..+...|.+++|..+|++..
T Consensus 1005 ieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IYkKa~ 1076 (1630)
T 1xi4_A 1005 IELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIFRKFD 1076 (1630)
T ss_pred HHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 999999984421 12233444455555555 5566666666655322 3457888999999999999999863
Q ss_pred hcCCccchhcHHHHHHHHH-hcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchH
Q 046930 512 KRGSVVTDQSYYSILKGLD-NEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPV 590 (965)
Q Consensus 512 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 590 (965)
. +...+..+. ..++++.|.++.... .....+.+++..+...|++++|+..|.+. .+.....
T Consensus 1077 ~---------~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~ 1138 (1630)
T 1xi4_A 1077 V---------NTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYM 1138 (1630)
T ss_pred C---------HHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHH
Confidence 2 111112222 556666666666533 44677888899999999999999998765 4455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 046930 591 NVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQG 670 (965)
Q Consensus 591 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 670 (965)
.++..+.+.|++++|.+.+.......++ +.....++.+|++.+++++.... ++ .++...|..++..|...|
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~~e--~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccc--ccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcC
Confidence 7888888899999998888776655433 23334588888888888753333 22 346667777888888999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 046930 671 CFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLH 750 (965)
Q Consensus 671 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 750 (965)
++++|..+|..+ ..|..++..|.+.|++++|++.+++.. +..+|..+..+|...|++..|.....
T Consensus 1210 ~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred CHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999874 368888888888899999999888762 56788888888888888888887665
Q ss_pred HhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHh--cCCCHHHHHHHHHHHHhcCc
Q 046930 751 DLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLC--TKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 751 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~--~~g~~~eA~~~~~~~~~~~~ 827 (965)
.+ ..++..+..++..|...|.+++|+.+++..+ ++.|.+.. +.-|+..+. +-++.-|+++.|.+-.+.++
T Consensus 1275 ~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1275 HI-----VVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred hh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 43 2345566688888999999999999998884 56676655 545666555 57788888888887766333
Q ss_pred chhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHH
Q 046930 828 VLELINRVDIEVESESVLNFLISLCEQGSILEAIAILD 865 (965)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 865 (965)
..+- --+...|..+...|.+.|+++.|+..+-
T Consensus 1348 ~~r~------~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1348 VLRA------AEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HhHH------HHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2110 0123346667777888999999986543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-20 Score=215.87 Aligned_cols=759 Identities=12% Similarity=0.111 Sum_probs=378.4
Q ss_pred ccccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 046930 3 KTSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF 82 (965)
Q Consensus 3 ~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (965)
+.|+|-....|......+ ..+|+|++|.++--.+ -.|.--++.+...+-++=...|+..--+..|..+++.+ +.
T Consensus 354 r~~lpGad~l~~~~F~~l-~~~g~y~~AA~~aa~s--p~giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g---~L 427 (1630)
T 1xi4_A 354 RNNLAGAEELFARKFNAL-FAQGNYSEAAKVAANA--PKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG---QL 427 (1630)
T ss_pred hcCCCCchhHHHHHHHHH-HHcCCHHHHHHHHHhC--ccccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC---CC
Confidence 567787778888888877 6788888886653331 12333445555555444445566666666666666665 45
Q ss_pred chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh---------------------hHHHHHHHHHhcCChhHHHH
Q 046930 83 DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV---------------------SYTSLVIALCMLGRVNEVNE 141 (965)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~~~~~~A~~ 141 (965)
+..--..+++.-..+|+.+-...++.+- .+..+-. +....+.++++.|+++++..
T Consensus 428 n~~eSlEl~r~vl~q~r~~lle~Wl~e~----KL~~SEeLGDlv~~~d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~ 503 (1630)
T 1xi4_A 428 NKYESLELCRPVLQQGRKQLLEKWLKED----KLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVL 503 (1630)
T ss_pred cHHHHHHHHHHHHHhchHHHHHHHHHhC----CccccHHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHH
Confidence 5554555555555555543333333221 1111100 11233344444444444444
Q ss_pred HHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 142 LFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFC 221 (965)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (965)
.-++ .|..|| |..|+..+.+. +++.|.++-..+.+... .....+.++..+.
T Consensus 504 Y~~~-----------------------~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~~--p~~d~~~ivd~f~ 554 (1630)
T 1xi4_A 504 YAKK-----------------------VGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDEE--PLADITQIVDVFM 554 (1630)
T ss_pred HHhc-----------------------cCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCCC--CccCHHHHHHHHH
Confidence 4222 122333 33445444433 46666666555554421 2334555667777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 046930 222 KKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEE 301 (965)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 301 (965)
..+...++..++-+..+.+-+.+...-+.++..=.. +.+ ++-+.+...+.- +..-+..+...|.+.|-++.|++
T Consensus 555 ~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~-~~p----qvadail~~~~f-thyd~~~IA~LCE~aGl~qrale 628 (1630)
T 1xi4_A 555 EYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLM-HAP----QVADAILGNQMF-THYDRAHIAQLCEKAGLLQRALE 628 (1630)
T ss_pred hcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhc-cch----hHHHHHHhcCcc-ccccHHHHHHHHHHcCcHHHHHH
Confidence 777777777777776665533333333333333211 222 233333344333 44556778889999999999999
Q ss_pred HHcCCCC-------CHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHH-------------HHHHHHhcCCH
Q 046930 302 VSKGILG-------DVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNI-------------LIKALFMVGAL 361 (965)
Q Consensus 302 ~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~g~~ 361 (965)
.+..+.. ....-...+..|...=+.+.++++++.|...++.-+...... ++..+-+.+.+
T Consensus 629 ~y~d~~dikR~~~~~~~~~~~~l~~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~ 708 (1630)
T 1xi4_A 629 HFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSF 708 (1630)
T ss_pred hcCCHHHHHHHhhccCcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcch
Confidence 8764311 001111123344445667888999999987655544433333 33333333333
Q ss_pred HHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HhcCCCCHH--------------
Q 046930 362 EDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDEL------------RRMSISSVA-------------- 415 (965)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~-------------- 415 (965)
+.-.-++..... ...|+.+....+.++++.|++.+.+++.++- .+...++..
T Consensus 709 egl~y~l~siv~--~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~ 786 (1630)
T 1xi4_A 709 EGLFYFLGSIVN--FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHD 786 (1630)
T ss_pred hhHHHHHHhhcc--ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHH
Confidence 333333333332 3457788889999999999998888877551 111111100
Q ss_pred --H------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHH----------Hh
Q 046930 416 --C------YNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRI----------EN 477 (965)
Q Consensus 416 --~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~----------~~ 477 (965)
. ....+..|.+.-++..+-.+...+++. ..+......++.........++..+.+++- +.
T Consensus 787 l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~--d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~ 864 (1630)
T 1xi4_A 787 LVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDV--DCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEA 864 (1630)
T ss_pred HHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012333444443333333444444332 344445555555443333333332222111 11
Q ss_pred c--ccccchhHHHHHHHHHHhcCcH-------------------------HHHHHHHHHHHhcC-----CccchhcHHHH
Q 046930 478 L--RSEIYDIICNDVISFLCKRGSS-------------------------EVASELYMFMRKRG-----SVVTDQSYYSI 525 (965)
Q Consensus 478 ~--~~~~~~~~~~~l~~~~~~~g~~-------------------------~~A~~~~~~~~~~~-----~~~~~~~~~~l 525 (965)
. .-...+.++|+++..|...++- ..|.-.|++- ..+ +.-....|...
T Consensus 865 ~~~~g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g-~~d~eli~vt~~n~l~k~~ 943 (1630)
T 1xi4_A 865 RIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERG-QCDLELINVCNENSLFKSL 943 (1630)
T ss_pred HHhCCCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhccc-CCcHHHHHHHhcchhHHHH
Confidence 1 1112335667766666643321 1222222110 000 00001112222
Q ss_pred HHHHHhcCcch--------------hhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCc----ccc
Q 046930 526 LKGLDNEGKKW--------------LIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISS----TVT 587 (965)
Q Consensus 526 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~ 587 (965)
.+-++...+.+ ..........-.....+..++-.+..|...|.+.+|+.+++++.-.+. +..
T Consensus 944 arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~ 1023 (1630)
T 1xi4_A 944 SRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRN 1023 (1630)
T ss_pred HHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHH
Confidence 22222221110 111111111122345566777788888888999999999988774332 222
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 046930 588 IPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLC 667 (965)
Q Consensus 588 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 667 (965)
....++....+. +..+....+.... ......++..+...|.+++|..+|++... .....+.+ +.
T Consensus 1024 LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie 1087 (1630)
T 1xi4_A 1024 LQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IE 1087 (1630)
T ss_pred HHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HH
Confidence 222344344333 2233333333322 11123356666666677777666666421 11112222 22
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 046930 668 RQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFK 747 (965)
Q Consensus 668 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 747 (965)
..+++++|.++.++. -++.+|..++.++...|++++|++.|.+. .|...|..++.++.+.|++++|++
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 555666666666543 12455666666666666666666666442 255556666666666666666666
Q ss_pred HHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCc
Q 046930 748 FLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKS 827 (965)
Q Consensus 748 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 827 (965)
++....+. .+++.....++.+|.+.+++++ ++.| ++ .|+...+..++..|...|++++|..+|.++-
T Consensus 1156 yL~mArk~--~~e~~Idt~LafaYAKl~rlee-le~f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---- 1222 (1630)
T 1xi4_A 1156 YLQMARKK--ARESYVETELIFALAKTNRLAE-LEEF---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 1222 (1630)
T ss_pred HHHHHHhh--cccccccHHHHHHHHhhcCHHH-HHHH---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----
Confidence 66666553 2333223346666666666553 2222 11 3344445556666666666666666666541
Q ss_pred chhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHHH
Q 046930 828 VLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
.+..++..|.+.|++++|++.+++.
T Consensus 1223 ---------------ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1223 ---------------NFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred ---------------HHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 3555566666666666666666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-24 Score=241.89 Aligned_cols=232 Identities=13% Similarity=0.016 Sum_probs=200.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 046930 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIY 699 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 699 (965)
+..++..++..+...|++++|+..|+++.+..+. ..++..++.+|...|++++|+..++++++.. +.+..++..++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 5777888999999999999999999999987543 7889999999999999999999999999864 345778899999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHH
Q 046930 700 NLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDME 778 (965)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 778 (965)
++...|++++|+..|+++++.. +.+...+..++.++...|++++|+..++++.+. .| +..++..++.++...|+++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999863 456788999999999999999999999999884 55 5678999999999999999
Q ss_pred HHHHHHHHhHhCCCCCCh-------HHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCcchhhhhcccccc-ccccHHHH
Q 046930 779 GALGFFLDFNTKGVSPDF-------LGFLYLVKGLCT---KGRMEEARSILREMLQSKSVLELINRVDIEV-ESESVLNF 847 (965)
Q Consensus 779 ~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~---~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 847 (965)
+|++.|+++++ +.|+. ..+..++.++.. .|++++|...++++++. .| ....+..+
T Consensus 390 ~A~~~~~~a~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------------~~~~~~~~~~l 455 (514)
T 2gw1_A 390 KALKQYDLAIE--LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------------DPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHHH--HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------------CTTCHHHHHHH
T ss_pred HHHHHHHHHHH--hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------------CcccHHHHHHH
Confidence 99999999976 33332 268889999999 99999999999999983 34 34466778
Q ss_pred HHHhhhcCcHHHHHHHHHHHhhcc
Q 046930 848 LISLCEQGSILEAIAILDEIGYML 871 (965)
Q Consensus 848 ~~~~~~~g~~~~A~~~~~~~~~~~ 871 (965)
+..+...|++++|++.++++....
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Confidence 888999999999999999976553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-24 Score=240.30 Aligned_cols=432 Identities=12% Similarity=-0.020 Sum_probs=330.7
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
....|..++..+ .+.|++++|+..|++++... |++.++..++.++...|++++|+..|+.+++.+ |.+..++.
T Consensus 5 ~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 77 (514)
T 2gw1_A 5 YALALKDKGNQF-FRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHH-HHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---SCCHHHHH
T ss_pred hHHHHHHHHHHH-HHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---hHHHHHHH
Confidence 345778888887 79999999999999999876 578899999999999999999999999999998 88999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC------------------
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG------------------ 150 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------ 150 (965)
.++.+|...|++++|+..|++++..+ +++.......+..+........+.+.+..+....
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 99999999999999999999999876 4555554444444443333333333222111111
Q ss_pred -CccchhhhhhHHhhhhh-----hcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----C--CC------CC
Q 046930 151 -LKFDVVFYSCWICGQMV-----DKGIKPDTVSYTILLDGFSK---EGTIEKAVGILNKMIE-----D--RL------RP 208 (965)
Q Consensus 151 -~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~ 208 (965)
..|+.......+...-. ....+.+...+..+...+.. .|++++|...|+++++ . .+ +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 01111111111100000 00002235556666665665 8999999999999988 3 11 12
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIIN 288 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 288 (965)
+..++..++..+...|++++|...|+++.+.... ...+..+..++...|++++|...++++...... +..++..++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHH
Confidence 3567788889999999999999999999988633 888888999999999999999999999887433 6678889999
Q ss_pred HHHhcCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 046930 289 GLCKVGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDA 364 (965)
Q Consensus 289 ~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 364 (965)
.+...|++++|...++.. +.+..++..++..+...|++++|+..++.+.+.. +.+...+..++..+...|++++|
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999887643 5677888899999999999999999999998765 33567888889999999999999
Q ss_pred HHHHHHchhCCCc-cc----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 046930 365 RALYQAMPEMNLV-AN----SVTYSTMIDGYCK---LGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEV 436 (965)
Q Consensus 365 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (965)
...++++.+.... ++ ..++..++.++.. .|++++|+..|+++....|.+..++..++.++...|++++|...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999988764310 11 3378888999999 99999999999999998888999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHH
Q 046930 437 FIELNEKGLSLYVGMHKII 455 (965)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~ 455 (965)
++++++. .|+.......
T Consensus 472 ~~~a~~~--~~~~~~~~~~ 488 (514)
T 2gw1_A 472 FEESADL--ARTMEEKLQA 488 (514)
T ss_dssp HHHHHHH--CSSHHHHHHH
T ss_pred HHHHHHh--ccccHHHHHH
Confidence 9999886 5655544433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=242.05 Aligned_cols=189 Identities=14% Similarity=0.199 Sum_probs=181.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHhCCCCCCH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGC---------FVEAFRLFDSLERIDMVPSE 691 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~ 691 (965)
...++.++++|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.+. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 456888999999999999999999999999999999999999999987654 78999999999999999999
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHH
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGF 771 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 771 (965)
.+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcC
Q 046930 772 CQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTK 809 (965)
Q Consensus 772 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 809 (965)
++.|++++|.+++++|.+.+..|+..||..+...+...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998888753
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-23 Score=236.95 Aligned_cols=438 Identities=12% Similarity=0.082 Sum_probs=293.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046930 345 IVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGL 424 (965)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (965)
...+..+...+.+.|++++|...|+++.+.+ +.+..++..++.++...|++++|+..|+++.+..|.+..++..++.++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3456667777888888888888888887754 456677888888888888888888888888888888888888888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHH
Q 046930 425 CKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVAS 504 (965)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 504 (965)
...|++++|+..|+ .+.. .|+.... .+.. +...+...+|.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~~~~--~~~~-----------------------------------~~~~~~~~~a~ 143 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDFDGA--SIEP-----------------------------------MLERNLNKQAM 143 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------C-----------------------------------HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCCChH--HHHH-----------------------------------HHHHHHHHHHH
Confidence 88888888888886 3332 2222211 1111 22223345566
Q ss_pred HHHHHHHhcCC------ccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHh
Q 046930 505 ELYMFMRKRGS------VVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKN 578 (965)
Q Consensus 505 ~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 578 (965)
..++.++...+ .|+... +..+....+...++..+..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTS--------------------------------------LASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HHHHHHCC-------CCCCCHHH--------------------------------------HHHHHHTSCHHHHHHTSCC
T ss_pred HHHHHHHHhCccccccccchHhH--------------------------------------HHHHHHhcChHHHHHHHhh
Confidence 66666544211 111100 1111111112222221111
Q ss_pred hhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHH--------HhcCCHHHHHHHHHHHHhc
Q 046930 579 MKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAAL--------CREGYVNKALDLCAFAKNK 650 (965)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~~~~~ 650 (965)
..... +........+...+ ...|++++|+.+|+++.+.
T Consensus 186 ~~~~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 186 SSNYD----------------------------------TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp CCSSC----------------------------------SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccc----------------------------------cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11110 00111222222221 2235789999999999887
Q ss_pred CCccc-------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 046930 651 GITVN-------IVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFK 723 (965)
Q Consensus 651 ~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (965)
.+. + ..++..++..+...|++++|+..|+++++.. |+...+..+...+...|++++|++.|+++++.. +
T Consensus 232 ~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 307 (537)
T 3fp2_A 232 NTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-P 307 (537)
T ss_dssp -CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-T
T ss_pred CCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-C
Confidence 433 3 2357778888999999999999999999854 667888999999999999999999999999863 5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh-HHHHH
Q 046930 724 PSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF-LGFLY 801 (965)
Q Consensus 724 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ 801 (965)
.+..++..++.++...|++++|+..++++.+. .| +..++..++.++...|++++|++.++++++ ..|+. ..+..
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~ 383 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTF 383 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHH
Confidence 56889999999999999999999999999984 56 467899999999999999999999999976 45654 45888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhc----------CcHHHHHHHHHHHhhcc
Q 046930 802 LVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQ----------GSILEAIAILDEIGYML 871 (965)
Q Consensus 802 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 871 (965)
++..+...|++++|...|+++++..+... ........+..++..+... |++++|+..++++..
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-- 456 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQE-----KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE-- 456 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCS-----SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcch-----hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--
Confidence 99999999999999999999998432100 0000111234445566666 999999999887532
Q ss_pred CCCcccchhhhhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHhhhccchHHHHH
Q 046930 872 FPTQRFGTDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVASFCSKGELQKAN 951 (965)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~g~~~~A~ 951 (965)
.. |.+...++.++..|.+.|++++|+
T Consensus 457 -----------------------------------------------------~~-p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 457 -----------------------------------------------------LD-PRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp -----------------------------------------------------HC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------------------------------------hC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 12 222233344434488888888888
Q ss_pred HHHHHHhcccccC
Q 046930 952 KLMKEMLSSFKED 964 (965)
Q Consensus 952 ~~~~~~~~~~~~~ 964 (965)
+.|+++++..|++
T Consensus 483 ~~~~~al~~~~~~ 495 (537)
T 3fp2_A 483 ELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHC--C
T ss_pred HHHHHHHHhCCCc
Confidence 8888888877764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-22 Score=224.36 Aligned_cols=345 Identities=11% Similarity=0.080 Sum_probs=268.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHH
Q 046930 28 EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFF 107 (965)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 107 (965)
..+...+..++..+ |.+...+..++..+.+.|++++|+..|+.+++.+ |.+..++..++.++...|++++|+..|
T Consensus 9 ~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 9 SGVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34555666666544 5677788999999999999999999999999887 788999999999999999999999999
Q ss_pred HHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCH---HHHHHHHHH
Q 046930 108 ENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT---VSYTILLDG 184 (965)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~l~~~ 184 (965)
+++++.+ |.+..++..++.+|...|++++|...|+++.+..+ .+. .++..++..
T Consensus 84 ~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 84 TKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP---------------------SENEEKEAQSQLIKS 140 (450)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC---------------------CHHHHHHHHHHHHHH
T ss_pred HHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------------CChhhHHHHHHHHHH
Confidence 9999876 67788999999999999999999999999987531 334 677777444
Q ss_pred ------------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046930 185 ------------FSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLI 252 (965)
Q Consensus 185 ------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 252 (965)
+.+.|++++|...|+++++..+. +..++..++.++.+.|++++|+..|+++.+.. +.+..++..++
T Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 218 (450)
T 2y4t_A 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIS 218 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 78889999999999999886543 78888889999999999999999999988765 55778888899
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHH
Q 046930 253 DGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILET 332 (965)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 332 (965)
.+|...|++++|...|+++...... +...+..+.... .......++..+...|++++|+..
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~A~~~ 279 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK------------------KLNKLIESAEELIRDGRYTDATSK 279 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH------------------HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999998875322 333333321110 011233456778888888888888
Q ss_pred HHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 046930 333 KQRLEEAGIQMD----IVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRR 408 (965)
Q Consensus 333 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (965)
++.+....+. + ...+..++..+.+.|++++|...++++.+.. +.+..++..++.+|...|++++|+..|+++.+
T Consensus 280 ~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 280 YESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888876432 2 3477888888999999999999999987754 44678889999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHH
Q 046930 409 MSISSVACYNCIING 423 (965)
Q Consensus 409 ~~~~~~~~~~~l~~~ 423 (965)
..|.+..++..+..+
T Consensus 358 ~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 358 HNENDQQIREGLEKA 372 (450)
T ss_dssp TSSSCHHHHHHHHHH
T ss_pred hCcchHHHHHHHHHH
Confidence 888888888888754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-23 Score=226.14 Aligned_cols=330 Identities=12% Similarity=0.056 Sum_probs=245.0
Q ss_pred cccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.|.+...|..++..+ ...|++++|+..|+.++... +.+..++..++.++...|++++|+..|+++++.+ |.+..
T Consensus 22 ~p~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~ 95 (450)
T 2y4t_A 22 SMADVEKHLELGKKL-LAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---MDFTA 95 (450)
T ss_dssp -CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHH
T ss_pred cHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcHH
Confidence 477778999999988 78999999999999999865 5678899999999999999999999999999998 78899
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHH
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV---VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWI 162 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i 162 (965)
++..++.+|.+.|++++|+..|++++... |.+. ..+..++..+...+.+..|...+.. |- ...-...
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~---~~~A~~~- 165 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGS----GD---YTAAIAF- 165 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TC---HHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc----CC---HHHHHHH-
Confidence 99999999999999999999999999865 5556 7788888877766666666655432 10 0000001
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 046930 163 CGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV 242 (965)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 242 (965)
...+... .+.+..++..++.+|.+.|++++|.+.|+++.+..+. +..++..++.++...|++++|+..|+++.+.. +
T Consensus 166 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 242 (450)
T 2y4t_A 166 LDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-Q 242 (450)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 1112111 2346888999999999999999999999999987543 78999999999999999999999999999875 4
Q ss_pred CCHhHHHHH------------HHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCcchHHHHHcCC
Q 046930 243 ADEFVYATL------------IDGVCRRGDLDCAFRLLEDMEKKGIKPS----IVTYNTIINGLCKVGRTSDAEEVSKGI 306 (965)
Q Consensus 243 ~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 306 (965)
.+...+..+ +..+.+.|++++|..+|+++.+.... + ...+..++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~---------------- 305 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCF---------------- 305 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHH----------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHH----------------
Confidence 455555555 77888889999999999988875322 2 22344444444
Q ss_pred CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHH
Q 046930 307 LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTM 386 (965)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (965)
...|++++|+..++.+.... +.+...+..++.+|...|++++|...|+++.+.. +.+..++..+
T Consensus 306 --------------~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 369 (450)
T 2y4t_A 306 --------------SKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGL 369 (450)
T ss_dssp --------------HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHH
T ss_pred --------------HHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 44555555555555555543 3345666666667777777777777777766643 2234444444
Q ss_pred H
Q 046930 387 I 387 (965)
Q Consensus 387 ~ 387 (965)
.
T Consensus 370 ~ 370 (450)
T 2y4t_A 370 E 370 (450)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-22 Score=230.23 Aligned_cols=334 Identities=13% Similarity=0.045 Sum_probs=204.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+.+.|++++|+..|+.+++.+ |.++.++..++.+|...|++++|++.|+++++.+ |.+..++..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 99 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHH
Confidence 4567888899999999999999999999988 7889999999999999999999999999999877 7788899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR- 205 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 205 (965)
+.++...|++++|+..|+ ..... |+ .....+..+...+...+|...+++++...
T Consensus 100 a~~~~~~g~~~~A~~~~~-~~~~~----------------------~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 154 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLS-VLSLN----------------------GD--FDGASIEPMLERNLNKQAMKVLNENLSKDE 154 (537)
T ss_dssp HHHHHHHTCHHHHHHHHH-HHC-----------------------------------CHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHcCCHHHHHHHHH-HHhcC----------------------CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999996 44321 22 11222334555666678888888886541
Q ss_pred -----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHH--------hcCCHhHHHHHHHHH
Q 046930 206 -----LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEF-VYATLIDGVC--------RRGDLDCAFRLLEDM 271 (965)
Q Consensus 206 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~g~~~~A~~~~~~~ 271 (965)
..|+. ..+..+....+.+.+...+...... .+... ....+...+. ..|++++|..+++++
T Consensus 155 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 155 GRGSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ----CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchH----hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22332 3334455566666665555443322 22211 2222222221 225788899999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 046930 272 EKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNIL 351 (965)
Q Consensus 272 ~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 351 (965)
.+..+. +...+..+..++ ..+...+...|++++|+..++.+.... |+...+..+
T Consensus 229 l~~~p~-~~~~~~~~~~~~-----------------------~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 282 (537)
T 3fp2_A 229 LSANTV-DDPLRENAALAL-----------------------CYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFL 282 (537)
T ss_dssp HC--CC-CHHHHHHHHHHH-----------------------HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHCCC-cchhhHHHHHHH-----------------------HHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHH
Confidence 876433 333333222222 223334445555555555555555543 224555555
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChH
Q 046930 352 IKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVD 431 (965)
Q Consensus 352 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (965)
...+...|++++|...++++.+.. +.+..++..++..+...|++++|+..|+++.+..|.+..++..++.++...|+++
T Consensus 283 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 283 ALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 555555666666666666555443 2334555555666666666666666666666555555556666666666666666
Q ss_pred HHHHHHHHHHHC
Q 046930 432 MATEVFIELNEK 443 (965)
Q Consensus 432 ~A~~~~~~~~~~ 443 (965)
+|+..++++++.
T Consensus 362 ~A~~~~~~~~~~ 373 (537)
T 3fp2_A 362 ESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666655554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=234.47 Aligned_cols=206 Identities=18% Similarity=0.225 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHhcCCcccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC---------h
Q 046930 638 NKALDLCAFAKNKGITVNI-VTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQ---------L 707 (965)
Q Consensus 638 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 707 (965)
..+..+.+.+.+++..+++ ..++.++.+|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445566667766655444 46888999999999999999999999999999999999999999987765 6
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 046930 708 LDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDF 787 (965)
Q Consensus 708 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (965)
++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhh
Q 046930 788 NTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCE 853 (965)
Q Consensus 788 ~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 853 (965)
.+.|+.||..+|..|+.+|++.|++++|.+++++|.+. +..|+..++..+...+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~----------g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL----------VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh----------CCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999874 367888877777766654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-20 Score=197.53 Aligned_cols=333 Identities=11% Similarity=0.054 Sum_probs=226.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+...|++++|+..|+.+++.+ |.++.++..++.++...|++++|+..|+++++.. |.+...+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 77 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHH
Confidence 3445566666666666666666666666665 5566666666666666666666666666666654 4455666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHH------------HHHHHHHHhcCCHHHH
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSY------------TILLDGFSKEGTIEKA 194 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A 194 (965)
+.++...|++++|...|+++.+..+... .+...+ ..++..+...|++++|
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQ------------------EEKEAESQLVKADEMQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCccc------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 6666666666666666666665421000 112222 2336778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 195 VGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
.+.|+++.+..+. +..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.
T Consensus 140 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 140 ITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999987544 78888999999999999999999999999875 567888999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCH----HHHHH
Q 046930 275 GIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDI----VMCNI 350 (965)
Q Consensus 275 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 350 (965)
... +...+..+.... .......++..+...|++++|+..++++....+. +. ..+..
T Consensus 218 ~~~-~~~~~~~~~~~~------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 277 (359)
T 3ieg_A 218 DQD-HKRCFAHYKQVK------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKER 277 (359)
T ss_dssp CTT-CHHHHHHHHHHH------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHH
T ss_pred Ccc-chHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHH
Confidence 332 333332221110 1112223455666777777777777777765432 22 22445
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046930 351 LIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLC 425 (965)
Q Consensus 351 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (965)
+...+...|++++|...++++.+.. +.+..++..++.++...|++++|...|+++.+..|.+..++..+..+..
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 6667777777777777777776653 3456677777777777777777777777777777777777766666544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-19 Score=193.24 Aligned_cols=324 Identities=12% Similarity=0.040 Sum_probs=257.3
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
+...+..++..+ ...|++++|+..|+.++... |.++.++..++.++...|++++|+..|+.+++.+ |.+..++.
T Consensus 2 ~~~~~~~~~~~~-~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 75 (359)
T 3ieg_A 2 DVEKHLELGKKL-LAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK---MDFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcchHHH
Confidence 345778888887 89999999999999999876 5678899999999999999999999999999998 78889999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCC---CCHhhHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCcc
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALK---PNVVSYTSL------------VIALCMLGRVNEVNELFVRMESEGLKF 153 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (965)
.++.++...|++++|+..|+++++.. | .+...+..+ +..+...|++++|+..++++.+..
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 150 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--- 150 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---
Confidence 99999999999999999999999865 4 455566555 688999999999999999998764
Q ss_pred chhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046930 154 DVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVF 233 (965)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 233 (965)
+.+..++..++..+...|++++|...|+++++..+. +..++..+..++...|++++|...|
T Consensus 151 ------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 151 ------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 256788999999999999999999999999987544 7889999999999999999999999
Q ss_pred HHHHHcCCCCCHhHHH------------HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 046930 234 KKVEDLGLVADEFVYA------------TLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEE 301 (965)
Q Consensus 234 ~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 301 (965)
+++.+.. +.+...+. .+...+.+.|++++|...++++.+.... +...+.
T Consensus 212 ~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~----------------- 272 (359)
T 3ieg_A 212 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTV----------------- 272 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHH-----------------
T ss_pred HHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHH-----------------
Confidence 9999875 33444333 2356678888999999988888875322 222111
Q ss_pred HHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHH
Q 046930 302 VSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSV 381 (965)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 381 (965)
..+..++.++...|++++|+..++.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..
T Consensus 273 ---------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~ 341 (359)
T 3ieg_A 273 ---------RSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQ 341 (359)
T ss_dssp ---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHH
T ss_pred ---------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChH
Confidence 112334455566666666777777776654 3467788888888888888888888888888764 33455
Q ss_pred HHHHHHHHHHH
Q 046930 382 TYSTMIDGYCK 392 (965)
Q Consensus 382 ~~~~l~~~~~~ 392 (965)
++..+..+...
T Consensus 342 ~~~~l~~~~~~ 352 (359)
T 3ieg_A 342 IREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-17 Score=186.40 Aligned_cols=364 Identities=12% Similarity=0.024 Sum_probs=285.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh----cCC
Q 046930 28 EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS----QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK----IGK 99 (965)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 99 (965)
..+...+..+.. ..++..+..++..|.. .+++++|+..|+++.+.+ ++.++..++..|.. .++
T Consensus 24 ~~~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~ 94 (490)
T 2xm6_A 24 NVNLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----YTPAEYVLGLRYMNGEGVPQD 94 (490)
T ss_dssp -CCHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCC
T ss_pred hHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCC
Confidence 344566666555 3577888888888888 899999999999998865 46788999999999 899
Q ss_pred hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCH
Q 046930 100 PELAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT 175 (965)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 175 (965)
+++|+.+|+++.+. .++.++..++..|.. .+++++|+..|+++.+. .++
T Consensus 95 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----------------------~~~ 147 (490)
T 2xm6_A 95 YAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-----------------------GRD 147 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------------------TCH
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------------------CCH
Confidence 99999999999874 477888889998988 78999999999998874 357
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhH
Q 046930 176 VSYTILLDGFSK----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK----KGKLEEAFTVFKKVEDLGLVADEFV 247 (965)
Q Consensus 176 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 247 (965)
.++..|...|.. .+++++|.+.|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 221 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELG 221 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHH
Confidence 778888888887 789999999999998864 77888888888888 899999999999998875 5667
Q ss_pred HHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHcCC--CCCHHHHHHHH
Q 046930 248 YATLIDGVCR----RGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK----VGRTSDAEEVSKGI--LGDVVTYSTLL 317 (965)
Q Consensus 248 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~l~ 317 (965)
+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|...++.. ..+..++..+.
T Consensus 222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 298 (490)
T 2xm6_A 222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLA 298 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7778888876 789999999999988764 45677777777776 77788887777643 34566667777
Q ss_pred HHhhhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHchhCCCcccHHHHHHHHHH
Q 046930 318 HGYIEE-----DNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVG---ALEDARALYQAMPEMNLVANSVTYSTMIDG 389 (965)
Q Consensus 318 ~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (965)
..|... +++++|+..+++..+.+ +...+..+...|...| ++++|.++|++..+.+ +...+..+...
T Consensus 299 ~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 372 (490)
T 2xm6_A 299 HLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNA 372 (490)
T ss_dssp HHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 777666 77888888888777764 4456666777666655 6777888888777753 56677777777
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 046930 390 YCK----LGRIEEALEIFDELRRMSISSVACYNCIINGLCK----SGMVDMATEVFIELNEKG 444 (965)
Q Consensus 390 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 444 (965)
|.. .+++++|+..|++..+.+ +..++..++.+|.. .+++++|...|++..+.+
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 777 678888888888777653 56777777777777 778888888888877764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-18 Score=187.99 Aligned_cols=381 Identities=11% Similarity=-0.014 Sum_probs=317.8
Q ss_pred cchhhHHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC
Q 046930 8 HQSRFFDSLIQGFCIK----RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS----QGNMSRAVEVLELMSDENVK 79 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 79 (965)
.+...+..++..| .. .++++.|+..|+++.+. .++.++..++..|.. .+++++|+..|+++.+.+
T Consensus 37 g~~~a~~~lg~~y-~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRY-FQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHH-HcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 4556778888877 55 79999999999999874 467788899999998 999999999999998865
Q ss_pred CCCchHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 046930 80 YPFDNFVCSSVVSGFCK----IGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 80 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 151 (965)
++.++..++..|.. .+++++|+.+|+++.+. .++.++..++.+|.. .+++++|+..|+++.+.
T Consensus 110 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-- 180 (490)
T 2xm6_A 110 ---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-- 180 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 56788999999998 89999999999999884 477889999999988 78999999999999874
Q ss_pred ccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 046930 152 KFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSK----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK----K 223 (965)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 223 (965)
.++.++..|...|.. .+++++|...|++..+.+ +..++..+...|.. .
T Consensus 181 ---------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 181 ---------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp ---------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred ---------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 467888899999988 899999999999999864 67788888888886 7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----C
Q 046930 224 GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCR----RGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKV-----G 294 (965)
Q Consensus 224 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----g 294 (965)
+++++|..+|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|... +
T Consensus 237 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcC
Confidence 89999999999998865 45677778888887 899999999999998764 566788888888887 8
Q ss_pred CcchHHHHHcCC--CCCHHHHHHHHHHhhhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 046930 295 RTSDAEEVSKGI--LGDVVTYSTLLHGYIEED---NVNGILETKQRLEEAGIQMDIVMCNILIKALFM----VGALEDAR 365 (965)
Q Consensus 295 ~~~~a~~~~~~~--~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 365 (965)
++++|...++.. ..+..++..+...|...| ++++|++.+++..+.+ ++..+..|...|.. .+++++|.
T Consensus 311 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 311 NREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999988754 456778888888887766 8899999999999874 67888889999988 89999999
Q ss_pred HHHHHchhCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 366 ALYQAMPEMNLVANSVTYSTMIDGYCK----LGRIEEALEIFDELRRMSIS---SVACYNCIINGLCKSGMVDMATEVFI 438 (965)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (965)
..|++..+.+ +..++..+...|.. .+++++|...|+++.+.++. +..+...+...+.. +.+.+.+..+
T Consensus 388 ~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~ 462 (490)
T 2xm6_A 388 IWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQ 462 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHH
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHH
Confidence 9999999865 57788889999998 89999999999999998643 66666666555432 3344444444
Q ss_pred HHHH
Q 046930 439 ELNE 442 (965)
Q Consensus 439 ~~~~ 442 (965)
+..+
T Consensus 463 ~~~~ 466 (490)
T 2xm6_A 463 QYIE 466 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-19 Score=187.46 Aligned_cols=285 Identities=10% Similarity=-0.008 Sum_probs=226.0
Q ss_pred ccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch
Q 046930 5 SFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN 84 (965)
Q Consensus 5 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (965)
+.|.+...+..++..+ ...|++++|+..|+.++... +.+...+..++.++...|++++|+..++++++.+ |.++
T Consensus 17 ~~~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~ 90 (330)
T 3hym_B 17 GLQENLDVVVSLAERH-YYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY---PSNP 90 (330)
T ss_dssp ---CCCTTHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTST
T ss_pred hchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCH
Confidence 4566777888888877 67799999999999988876 4455667777788888999999999999999887 7788
Q ss_pred HHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh
Q 046930 85 FVCSSVVSGFCKIG-KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC 163 (965)
Q Consensus 85 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~ 163 (965)
.++..++..+...| ++++|+..|++++... |.+...|..++.++...|++++|+..|+++.+..+
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------ 156 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK------------ 156 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc------------
Confidence 89999999999999 8999999999998865 66677888899999999999999999999887532
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---
Q 046930 164 GQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG--- 240 (965)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 240 (965)
.+...+..++..+...|++++|...|+++++..+. +..++..++.++...|++++|...++++.+..
T Consensus 157 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 226 (330)
T 3hym_B 157 ---------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226 (330)
T ss_dssp ---------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred ---------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence 34566777888889999999999999999887544 67888888899999999999999998887642
Q ss_pred -----CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCC----CCCHH
Q 046930 241 -----LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGI----LGDVV 311 (965)
Q Consensus 241 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~ 311 (965)
.+....++..+..++...|++++|...+++..+.... +...+..+...+...|++++|...++.. |.+..
T Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 1333567888888888999999999999998876433 5667778888888888888888777644 34555
Q ss_pred HHHHHHHHh
Q 046930 312 TYSTLLHGY 320 (965)
Q Consensus 312 ~~~~l~~~~ 320 (965)
++..+..++
T Consensus 306 ~~~~l~~~~ 314 (330)
T 3hym_B 306 SVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566565555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-18 Score=183.82 Aligned_cols=300 Identities=13% Similarity=0.089 Sum_probs=181.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.+...+..++..+...|++++|+.+|+.+++.+ |.+..++..++.++...|++++|+..|+++++.. |.++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 93 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSW 93 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHH
Confidence 4445556666666666666666666666666665 5555666666666666666666666666666654 4455566
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046930 124 TSLVIALCMLG-RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMI 202 (965)
Q Consensus 124 ~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 202 (965)
..++.++...| ++++|+..|+++++.. +.+..+|..++..+...|++++|...|+++.
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~---------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 152 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE---------------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAA 152 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC---------------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC---------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666666 6666666666666542 1234556666666666666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 046930 203 EDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVT 282 (965)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 282 (965)
+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+....
T Consensus 153 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----- 225 (330)
T 3hym_B 153 QLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA----- 225 (330)
T ss_dssp HHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-----
T ss_pred Hhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh-----
Confidence 55332 33444455555666666666666666655543 334455555555555555555555555554432000
Q ss_pred HHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 046930 283 YNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALE 362 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 362 (965)
.+. ....+....++..+...+...|+++
T Consensus 226 ----------~~~------------------------------------------~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 226 ----------IGN------------------------------------------EVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp ----------TSC------------------------------------------SCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred ----------ccc------------------------------------------cccccHHHHHHHHHHHHHHHhcCHH
Confidence 000 0011233456667777777777777
Q ss_pred HHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhcCC
Q 046930 363 DARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGL-CKSGM 429 (965)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 429 (965)
+|...++++.+.. +.+..++..++.++...|++++|...|+++.+..|.+..++..++.++ ...|+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 7777777776653 345567777777788888888888888887777777777777777776 34444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-18 Score=194.67 Aligned_cols=292 Identities=12% Similarity=-0.046 Sum_probs=180.6
Q ss_pred hhhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCcccHHHHHHHHHH---HHhcCcHHHHHHHHHHHHhCCCCCCHhhHH
Q 046930 621 VVDYSTIVAALCRE--GYVNKALDLCAFAKNKGITVNIVTYNTVIHS---LCRQGCFVEAFRLFDSLERIDMVPSEVSYA 695 (965)
Q Consensus 621 ~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 695 (965)
..++..++.++.+. +++++|+..|+++++..+. +...+..+..+ +...++.++|++.++++++.+ +.+..++.
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~ 213 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKV 213 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHH
Confidence 44555555555543 4688999999988887433 55566655554 345577788888888888754 23355555
Q ss_pred HHHHHHH----ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHH
Q 046930 696 TLIYNLC----KEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-KFTVSAVING 770 (965)
Q Consensus 696 ~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 770 (965)
.+...+. ..|++++|.+++++++... +.+..++..++.+|...|++++|+..++++.+. .|+ ..++..++.+
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHH
Confidence 5554443 3467788999998888752 456778888899999999999999999998874 664 5577777766
Q ss_pred HHhc-------------------CCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchh
Q 046930 771 FCQK-------------------GDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLE 830 (965)
Q Consensus 771 ~~~~-------------------g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 830 (965)
|... +.+++|+..++++.+ +.|+... +..++.++...|++++|...|+++++..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~---- 364 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE---- 364 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC----
Confidence 6432 346788888888865 5565544 8889999999999999999999999843
Q ss_pred hhhccccccccc----cHHHHHHH-hhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhhhhhhhhhcccccccccccc
Q 046930 831 LINRVDIEVESE----SVLNFLIS-LCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKLDECESLNAVASVASLS 905 (965)
Q Consensus 831 ~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (965)
|+.. ....++.. +...|++++|++.|++............ +
T Consensus 365 --------~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~----------------- 410 (472)
T 4g1t_A 365 --------LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------K----------------- 410 (472)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------H-----------------
T ss_pred --------CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------H-----------------
Confidence 2222 22334333 3467999999999998765433221110 0
Q ss_pred ccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhcccccC
Q 046930 906 NQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 906 ~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
....+...+.+.+... |+.+..+..++. |...|++++|++.|+++|+..|.+
T Consensus 411 -----~~~~l~~~~~~~l~~~--p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 411 -----MKDKLQKIAKMRLSKN--GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp -----HHHHHHHHHHHHHHHC--C-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred -----HHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 0001112334455556 555545544455 999999999999999999988765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-17 Score=181.88 Aligned_cols=378 Identities=10% Similarity=-0.002 Sum_probs=248.4
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046930 34 LKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (965)
|+++++.. |.+...|..++. +.+.|++++|..+|+++++.. |.+...|...+..+.+.|++++|..+|++++..
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~---P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF---PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 45566655 567788888888 478899999999999999988 889999999999999999999999999999985
Q ss_pred CCCCCCHhhHHHHHHH-HHhcCChhHHHH----HHHHHHHCCCccchhhhhhHHhhhhhhcCCC-CCHHHHHHHHHHHHh
Q 046930 114 GALKPNVVSYTSLVIA-LCMLGRVNEVNE----LFVRMESEGLKFDVVFYSCWICGQMVDKGIK-PDTVSYTILLDGFSK 187 (965)
Q Consensus 114 ~~~~~~~~~~~~l~~~-~~~~~~~~~A~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~l~~~~~~ 187 (965)
. |++..|...+.. ....|+.++|.+ +|++++.. .|.. ++...|...+....+
T Consensus 76 ~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~-------------------~g~~~~~~~~w~~~~~~~~~ 133 (530)
T 2ooe_A 76 V---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK-------------------IGMEIMSYQIWVDYINFLKG 133 (530)
T ss_dssp C---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH-------------------TTTSTTCHHHHHHHHHHHHH
T ss_pred C---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH-------------------CCCCcccHHHHHHHHHHHhc
Confidence 4 588888877753 345688887776 67666542 1222 356777777776554
Q ss_pred ---------cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH-------------HhcCChHHHHHHHHHHH------H
Q 046930 188 ---------EGTIEKAVGILNKMIEDRLRPN-LITYTAIIFGF-------------CKKGKLEEAFTVFKKVE------D 238 (965)
Q Consensus 188 ---------~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~-------------~~~g~~~~A~~~~~~~~------~ 238 (965)
.|++++|..+|+++++. +..+ ...|....... .+.+++..|..++.... +
T Consensus 134 ~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 134 VEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999983 2212 23333222211 12345666776666532 1
Q ss_pred cC---CCCC--------HhHHHHHHHHHHhc----CCH----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------
Q 046930 239 LG---LVAD--------EFVYATLIDGVCRR----GDL----DCAFRLLEDMEKKGIKPSIVTYNTIINGLCK------- 292 (965)
Q Consensus 239 ~~---~~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~------- 292 (965)
.. ++|+ ...|...+...... ++. +.+..+|++.+...+ .+...|..++..+.+
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhh
Confidence 11 2333 13444444322221 222 356677777776522 256777777777664
Q ss_pred cCCcc-------hHHHHHcC-----CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 046930 293 VGRTS-------DAEEVSKG-----ILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDI-VMCNILIKALFMVG 359 (965)
Q Consensus 293 ~g~~~-------~a~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 359 (965)
.|+++ +|..+++. .|.+...|..++..+...|++++|..+|+++++..+ .+. ..|..++..+.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhc
Confidence 57766 66666541 244566777777777777777777777777776432 222 46666666666777
Q ss_pred CHHHHHHHHHHchhCCCcccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 360 ALEDARALYQAMPEMNLVANSVTYSTMIDG-YCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFI 438 (965)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (965)
++++|..+|++..+.. +.+...+...+.. +...|+.++|..+|+++++..|.++..|..++..+.+.|+.++|..+|+
T Consensus 371 ~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 7777777777776642 1222223222222 2346777777777777777777777777777777777777777777777
Q ss_pred HHHHC
Q 046930 439 ELNEK 443 (965)
Q Consensus 439 ~~~~~ 443 (965)
+.+..
T Consensus 450 ~al~~ 454 (530)
T 2ooe_A 450 RVLTS 454 (530)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 77765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=186.93 Aligned_cols=269 Identities=12% Similarity=0.011 Sum_probs=210.1
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
.+...|..++..+ ...|++++|+..|+.++... +.+..++..++.++...|++++|+..|+++++.+ |.+..++
T Consensus 63 ~~~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~ 136 (365)
T 4eqf_A 63 KDWPGAFEEGLKR-LKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKAL 136 (365)
T ss_dssp TTCTTHHHHHHHH-HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred cchhHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHH
Confidence 4445688888887 78899999999999988876 5677888899999999999999999999999887 7788899
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH----------HHHHHHHhcCChhHHHHHHHHHHHCCCccchhh
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT----------SLVIALCMLGRVNEVNELFVRMESEGLKFDVVF 157 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (965)
..++.+|...|++++|+..|+++++.. |.+...+. .++.++...|++++|+..|+++++..+.
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----- 209 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD----- 209 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS-----
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-----
Confidence 999999999999999999999998865 33333333 3477888899999999999998875320
Q ss_pred hhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 158 YSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
..++.++..++..+...|++++|...|+++++..+. +..+|..++.++...|++++|+..|+++.
T Consensus 210 --------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 210 --------------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp --------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 126788888999999999999999999999887544 68888899999999999999999999988
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCcchHHHHHcC
Q 046930 238 DLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIK-----------PSIVTYNTIINGLCKVGRTSDAEEVSKG 305 (965)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 305 (965)
+.. +.+..++..+..+|.+.|++++|...|+++.+.... .+...|..+..++...|+.+.+..+...
T Consensus 275 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 275 EIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 875 556788888889999999999999999988764211 0245677777777778887777776543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-17 Score=181.52 Aligned_cols=426 Identities=11% Similarity=0.029 Sum_probs=266.1
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 69 VLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
+|+..++.+ |.+..+|..++. +.+.|++++|...|++++... |.+...|...+..+.+.|++++|..+|++++.
T Consensus 1 ~le~al~~~---P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 1 MAEKKLEEN---PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp CHHHHHHHC---TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ChhhHhhhC---CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 366777777 889999999998 478999999999999999865 77888999999999999999999999999987
Q ss_pred CCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 046930 149 EGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGF-SKEGTIEKAVG----ILNKMIED-RLRP-NLITYTAIIFGFC 221 (965)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~ 221 (965)
. .|++..|..++... ...|++++|.+ +|++++.. |..| +...|...+....
T Consensus 75 ~----------------------~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~ 132 (530)
T 2ooe_A 75 K----------------------VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLK 132 (530)
T ss_dssp T----------------------CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred c----------------------CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHh
Confidence 5 36777787777533 34677766655 77777653 4333 5677777777655
Q ss_pred h---------cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-------------hcCCHhHHHHHHHHHHHCCCCCC
Q 046930 222 K---------KGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVC-------------RRGDLDCAFRLLEDMEKKGIKPS 279 (965)
Q Consensus 222 ~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~~g~~~~ 279 (965)
+ .|+++.|..+|++.++....+....|........ +.+++..|..++.+..
T Consensus 133 ~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~------- 205 (530)
T 2ooe_A 133 GVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYE------- 205 (530)
T ss_dssp HSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHH-------
T ss_pred cCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHH-------
Confidence 4 6889999999999988321111233333222111 1122333333333211
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHcC----CCCC--------HHHHHHHHHHhhh----cCCh----hHHHHHHHHHHHc
Q 046930 280 IVTYNTIINGLCKVGRTSDAEEVSKG----ILGD--------VVTYSTLLHGYIE----EDNV----NGILETKQRLEEA 339 (965)
Q Consensus 280 ~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~--------~~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~ 339 (965)
.....++. ++|+ ...|...+..... .++. .+++.+|++++..
T Consensus 206 ------------------~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~ 267 (530)
T 2ooe_A 206 ------------------TVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV 267 (530)
T ss_dssp ------------------HHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh
Confidence 00011111 1222 1233333322111 1122 2556666666665
Q ss_pred CCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046930 340 GIQMDIVMCNILIKALFM-------VGALE-------DARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDE 405 (965)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 405 (965)
. +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|++
T Consensus 268 ~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 268 L-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp H-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3 3356666666666654 56665 6777777776521234466677777777777777777777777
Q ss_pred HHhcCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH-HHHcCChhhHHHHHHHHHhcccccc
Q 046930 406 LRRMSISSV-ACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQA-TFAKGGVGGVLNFVYRIENLRSEIY 483 (965)
Q Consensus 406 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~~a~~~~~~~~~~~~~~~ 483 (965)
+++..|.+. .+|..++..+.+.|++++|..+|++.++.. +.+...+...... +...|+.++|...+++..+..|+.
T Consensus 347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~- 424 (530)
T 2ooe_A 347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI- 424 (530)
T ss_dssp HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-
T ss_pred HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC-
Confidence 777666553 467777777777777777777777777642 1122222221111 234677777777777776666543
Q ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-c--chhcHHHHHHHHHhcCcchhhhhhhHHHHHhcC
Q 046930 484 DIICNDVISFLCKRGSSEVASELYMFMRKRGSV-V--TDQSYYSILKGLDNEGKKWLIGPLLSMFVKENG 550 (965)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (965)
..+|..++..+.+.|+.++|..+|++++..++. | ....|...+.-....|+.+.+..+.....+..|
T Consensus 425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 356677777777777777777777777665432 2 123555555555666777777766666666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-19 Score=188.46 Aligned_cols=308 Identities=12% Similarity=0.012 Sum_probs=218.9
Q ss_pred HccCCchHHHH-HHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC
Q 046930 22 IKRNDPEKALL-VLKDCLRNHGTLP--SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG 98 (965)
Q Consensus 22 ~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 98 (965)
...|++++|+. .|.+++...+..| +...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCc
Confidence 34578889988 8887775443333 34568889999999999999999999999998 889999999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHH
Q 046930 99 KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSY 178 (965)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 178 (965)
++++|+..|++++... |.+..++..++.++...|++++|+..|+++++..+......... ... .+.......+
T Consensus 113 ~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~ 185 (368)
T 1fch_A 113 QELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA---EEG--AGGAGLGPSK 185 (368)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH---HHH--hhhhcccHHH
Confidence 9999999999999987 77888999999999999999999999999998754221110000 000 0000001111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 046930 179 TILLDGFSKEGTIEKAVGILNKMIEDRLRP-NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCR 257 (965)
Q Consensus 179 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (965)
..+...+ ..|++++|...|+++++..+.. +..++..++.++...|++++|+..|+++.+.. +.+..++..+...+..
T Consensus 186 ~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 186 RILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLAN 263 (368)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 1233333 7889999999999998864432 57888888999999999999999999988875 5567888888999999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 046930 258 RGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLE 337 (965)
Q Consensus 258 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 337 (965)
.|++++|...|+++.+... .+..++..++.++.+.|++++|...++ ++.
T Consensus 264 ~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------------------~al 312 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFL------------------------------EAL 312 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH------------------------------HHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHH------------------------------HHH
Confidence 9999999999999887632 256666777777776776666666543 333
Q ss_pred HcCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 046930 338 EAGI----------QMDIVMCNILIKALFMVGALEDARALYQAMP 372 (965)
Q Consensus 338 ~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 372 (965)
...+ +....+|..+..++...|++++|..++.+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 313 NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 2211 1125667777777777777777777665443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-17 Score=184.49 Aligned_cols=222 Identities=10% Similarity=-0.063 Sum_probs=147.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-----
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDEN------VKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG----- 114 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 114 (965)
....|+.++.++...|++++|++.|+++++.. ...|....+|..++.+|...|++++|+..|++++...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34567778888888888888888888776531 0115556678888888888888888888888877531
Q ss_pred CC-CCCHhhHHHHHHHHHhc--CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHH---Hhc
Q 046930 115 AL-KPNVVSYTSLVIALCML--GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGF---SKE 188 (965)
Q Consensus 115 ~~-~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~---~~~ 188 (965)
.. +..+.++..++.++... +++++|+..|+++++..| .++..+..+..++ ...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p---------------------~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP---------------------KNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHHHHHS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHhcCc
Confidence 01 12345666666665554 467888888888877532 2355555555443 345
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHH
Q 046930 189 GTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK----KGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCA 264 (965)
Q Consensus 189 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 264 (965)
++.++|++.|+++++.++. +..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|
T Consensus 189 ~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp CCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHH
Confidence 6777888888888776543 56666655554443 356778888888887765 55677778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 265 FRLLEDMEKKGIKPSIVTYNTIINGLC 291 (965)
Q Consensus 265 ~~~~~~~~~~g~~~~~~~~~~l~~~~~ 291 (965)
...+++..+..+. +..++..++.+|.
T Consensus 267 ~~~~~~al~~~p~-~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 267 IELLKKALEYIPN-NAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence 8888888776333 5566666666654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.7e-18 Score=180.14 Aligned_cols=265 Identities=14% Similarity=0.043 Sum_probs=227.9
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
...+..++..+ ...|++++|+..|++++... +.+..++..++.++...|++++|+..|+.+++.+ |.+..++..
T Consensus 64 ~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~ 137 (368)
T 1fch_A 64 HPQPFEEGLRR-LQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK---PDNQTALMA 137 (368)
T ss_dssp CSSHHHHHHHH-HHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred hHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC---CCCHHHHHH
Confidence 45788888887 89999999999999999865 5678889999999999999999999999999998 789999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH----------------HHHHHHHhcCChhHHHHHHHHHHHCCCcc
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT----------------SLVIALCMLGRVNEVNELFVRMESEGLKF 153 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (965)
++.++...|++++|+..|++++... |.+...+. .+...+ ..|++++|+..|+++++..+.
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~- 213 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT- 213 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcC-
Confidence 9999999999999999999999876 44444443 244444 899999999999999886420
Q ss_pred chhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046930 154 DVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVF 233 (965)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 233 (965)
.++..++..++.++...|++++|...|+++++..+. +..++..++.++...|++++|+..|
T Consensus 214 ------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 214 ------------------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp ------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 125889999999999999999999999999987543 6889999999999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCcchHHHHH
Q 046930 234 KKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKP----------SIVTYNTIINGLCKVGRTSDAEEVS 303 (965)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~ 303 (965)
+++.+.. +.+..++..+..+|.+.|++++|...|+++.+..... ...+|..++.++...|++++|..++
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9999875 5678899999999999999999999999998753221 1678888889999999999988876
Q ss_pred c
Q 046930 304 K 304 (965)
Q Consensus 304 ~ 304 (965)
.
T Consensus 354 ~ 354 (368)
T 1fch_A 354 A 354 (368)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-17 Score=176.44 Aligned_cols=268 Identities=11% Similarity=-0.016 Sum_probs=227.0
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
.....+..++..+ ...|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++++.+ |.+..++
T Consensus 19 ~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~ 92 (327)
T 3cv0_A 19 MYHENPMEEGLSM-LKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVH 92 (327)
T ss_dssp GGSSCHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred hhhHHHHHHHHHH-HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cCCHHHH
Confidence 3445778888887 79999999999999999876 4578889999999999999999999999999998 7889999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH--------------HH-HHHhcCChhHHHHHHHHHHHCCCc
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL--------------VI-ALCMLGRVNEVNELFVRMESEGLK 152 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~ 152 (965)
..++.++...|++++|+..|++++... |.+...+..+ +. ++...|++++|...++++.+..
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 168 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-- 168 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--
Confidence 999999999999999999999999875 4455555544 33 4778899999999999998753
Q ss_pred cchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 046930 153 FDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTV 232 (965)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 232 (965)
+.+..++..++..+...|++++|...|+++.+..+. +..++..++.++...|++++|...
T Consensus 169 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 169 -------------------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 246888999999999999999999999999987543 688899999999999999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCcchHHH
Q 046930 233 FKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKP-----------SIVTYNTIINGLCKVGRTSDAEE 301 (965)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-----------~~~~~~~l~~~~~~~g~~~~a~~ 301 (965)
|+++.+.. +.+...+..+..++...|++++|.+.++++....... +...+..+..++...|++++|..
T Consensus 229 ~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 229 YNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 99998875 5578889999999999999999999999998763321 36678888889999999999988
Q ss_pred HHcCC
Q 046930 302 VSKGI 306 (965)
Q Consensus 302 ~~~~~ 306 (965)
+++..
T Consensus 308 ~~~~~ 312 (327)
T 3cv0_A 308 TYAQN 312 (327)
T ss_dssp HTTCC
T ss_pred HHHHH
Confidence 87643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=177.36 Aligned_cols=306 Identities=15% Similarity=0.125 Sum_probs=146.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh
Q 046930 58 CSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN 137 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (965)
-+.|++++|.+.++++ + .+.+|+.++.++.+.|++.+|++.|.++ +|...|..++.++...|+++
T Consensus 14 ~~~~~ld~A~~fae~~---~-----~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC---N-----EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC---C-----ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHH
Confidence 3567788999999887 2 1258999999999999999999999763 46668888888899999999
Q ss_pred HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 138 EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAII 217 (965)
Q Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 217 (965)
+|+..++.+++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++
T Consensus 79 eAi~yl~~ark~----------------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IG 129 (449)
T 1b89_A 79 ELVKYLQMARKK----------------------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 129 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTT-------CC---------
T ss_pred HHHHHHHHHHHh----------------------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHH
Confidence 999987777653 3557778889999999999999888874 35777999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 046930 218 FGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTS 297 (965)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 297 (965)
..|...|++++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++
T Consensus 130 d~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 9999999999999999876 47888999999999999999999888 27889999999999999999
Q ss_pred hHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHchhCC
Q 046930 298 DAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFM--VGALEDARALYQAMPEMN 375 (965)
Q Consensus 298 ~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 375 (965)
.|......+...+.....++..|.+.|.+++|+.+++..+... +.-...|+-|...|++ .++..+.++.|..- .+
T Consensus 195 lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--in 271 (449)
T 1b89_A 195 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VN 271 (449)
T ss_dssp HHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SC
T ss_pred HHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hc
Confidence 9988776666666666678888999999999999999888665 4556777777776765 44555555555432 23
Q ss_pred Ccc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHH
Q 046930 376 LVA------NSVTYSTMIDGYCKLGRIEEALEIFDELRRM------------SISSVACYNCIINGLC 425 (965)
Q Consensus 376 ~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~ 425 (965)
++| +...|..+...|...++++.|....-+-... .+.+...|...+..|.
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 333 3457888899999999999887644332211 2446666776666666
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-18 Score=184.13 Aligned_cols=263 Identities=12% Similarity=0.005 Sum_probs=198.4
Q ss_pred HHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHH
Q 046930 595 KLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVE 674 (965)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 674 (965)
.+...|+.++|...+..+.... |.+..+|..++..+...|++++|+..|+++++..+ .+..+|..++.+|...|++++
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccccHHH
Confidence 3333333333333333333322 24688999999999999999999999999998753 378899999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-Hhh----------HHHHHHHHHccCChHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCC
Q 046930 675 AFRLFDSLERIDMVPS-EVS----------YATLIYNLCKEGQLLDAKKLFDRMVLKGFKP--STRIYNSFIDGYCKFGQ 741 (965)
Q Consensus 675 A~~~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 741 (965)
|+..|+++++.. |+ ... +..+...+...|++++|+++|+++++.. +. +..++..++.+|...|+
T Consensus 152 A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 152 ACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCC
Confidence 999999998853 33 222 3345788999999999999999999862 22 68899999999999999
Q ss_pred HHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCh-HHHHHHHHHHhcCCCHHHHHHHH
Q 046930 742 LEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDF-LGFLYLVKGLCTKGRMEEARSIL 819 (965)
Q Consensus 742 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~eA~~~~ 819 (965)
+++|+..|+++++. .| +..+|..++.+|...|++++|++.|+++++ +.|+. ..+..++.++...|++++|...|
T Consensus 229 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 229 FNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999984 56 577999999999999999999999999976 56764 45889999999999999999999
Q ss_pred HHHHhcCcchhhhhcccc-ccccccHHHHHHHhhhcCcHHHHHHHHHH
Q 046930 820 REMLQSKSVLELINRVDI-EVESESVLNFLISLCEQGSILEAIAILDE 866 (965)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 866 (965)
+++++..+.......... ......+..++..+...|+.+.|..+.++
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999985432110000000 00234567777788899999999888765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=177.74 Aligned_cols=309 Identities=15% Similarity=0.136 Sum_probs=148.9
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC
Q 046930 95 CKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD 174 (965)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 174 (965)
.+.|++++|.++++++- ++.+|..++.++.+.|++++|++.|.+. +|
T Consensus 14 ~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika--------------------------~D 60 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------------------------DD 60 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC--------------------------CC
Confidence 47888999999999972 2349999999999999999999999653 57
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046930 175 TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDG 254 (965)
Q Consensus 175 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (965)
..+|..++..+...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~ 131 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR 131 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTT-------CC-----------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHH
Confidence 778999999999999999999988877764 3457888999999999999999988884 3677799999999
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHH
Q 046930 255 VCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQ 334 (965)
Q Consensus 255 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 334 (965)
|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+.... ++.+|..++.+|...|+++.|..+..
T Consensus 132 ~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~-~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-STRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp -----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC-CchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999976 368999999999999999999998874 89999999999999999999966554
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCC-
Q 046930 335 RLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKL--GRIEEALEIFDELRRMSI- 411 (965)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~- 411 (965)
.+ ...+.....++..|.+.|++++|..+++..+... +-....|+.+..+|++- ++..+.++.|..-....+
T Consensus 202 ~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~ 275 (449)
T 1b89_A 202 HI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 275 (449)
T ss_dssp TT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHH
T ss_pred HH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHH
Confidence 32 2344445568889999999999999999998765 45677788887777764 455566666553332223
Q ss_pred ----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChh
Q 046930 412 ----SSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVG 466 (965)
Q Consensus 412 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 466 (965)
.+...|..+...|.+.++++.|... |.+. +++......+.....+..+.+
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~e 329 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVE 329 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHH
Confidence 3566799999999999999988874 4444 344444444444445544443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-16 Score=162.21 Aligned_cols=274 Identities=11% Similarity=0.060 Sum_probs=215.8
Q ss_pred HHHHhhhcHHHHHHHHHhhhhcCccc--cchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHH
Q 046930 561 VQYLCLNDVTNALLFIKNMKEISSTV--TIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVN 638 (965)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 638 (965)
...+..|++.+|+..+++....++.. .....+++.++..|+.+.|...+... .+++..++..++..+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 34566789999999998876665543 23355678999999999999866542 3446888899999999999999
Q ss_pred HHHHHHHHHHhcCCcc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHH
Q 046930 639 KALDLCAFAKNKGITV-NIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRM 717 (965)
Q Consensus 639 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (965)
+|++.++++...+..| +...+..++.++...|++++|++.+++ +.+...+..++.++.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998876433 566788888999999999999999987 356788999999999999999999999999
Q ss_pred HHCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC
Q 046930 718 VLKGFKPSTRIY---NSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSP 794 (965)
Q Consensus 718 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 794 (965)
++. .|+.... ..++..+...|++++|+..|+++.+. .+.+...|+.++.++...|++++|++.|+++++ ..|
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p 231 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDS 231 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 986 3553211 22334445568999999999999986 244678999999999999999999999999976 567
Q ss_pred ChH-HHHHHHHHHhcCCCHHH-HHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHH
Q 046930 795 DFL-GFLYLVKGLCTKGRMEE-ARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAIL 864 (965)
Q Consensus 795 ~~~-~~~~l~~~~~~~g~~~e-A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 864 (965)
+.. ++..++..+...|+.++ +..+++++++ .+|+...+.++ ..+.+.+++|..-|
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~------------~~P~~~~~~d~---~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD------------AHRSHPFIKEY---RAKENDFDRLVLQY 288 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------HCTTCHHHHHH---HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------------hCCCChHHHHH---HHHHHHHHHHHHHc
Confidence 654 58889999999999976 5689999998 56665544443 23556666665544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=166.87 Aligned_cols=253 Identities=12% Similarity=0.080 Sum_probs=217.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCCchH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGN-MSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
|....+|+.++..+ ...|++++|+..|++++... |.+..+|..++.++...|+ +++|+..|+++++.+ |.+..
T Consensus 94 p~~~~a~~~lg~~~-~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P~~~~ 167 (382)
T 2h6f_A 94 DKFRDVYDYFRAVL-QRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHH
T ss_pred hhhHHHHHHHHHHH-HHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---CCCHH
Confidence 55667888888877 89999999999999999977 5678889999999999997 999999999999999 89999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
+|+.++.++...|++++|+..|++++..+ |.+..+|..++.++...|++++|+..|+++++.++
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-------------- 231 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-------------- 231 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------------
Confidence 99999999999999999999999999988 78899999999999999999999999999998753
Q ss_pred hhhcCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHH
Q 046930 166 MVDKGIKPDTVSYTILLDGFSK-EGTIEKA-----VGILNKMIEDRLRPNLITYTAIIFGFCKKG--KLEEAFTVFKKVE 237 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 237 (965)
.+..+|+.+..++.. .|..++| ++.|+++++..+. +...|+.+..++...| ++++|++.+.++
T Consensus 232 -------~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~- 302 (382)
T 2h6f_A 232 -------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL- 302 (382)
T ss_dssp -------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-
T ss_pred -------CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-
Confidence 568899999999998 6665777 5899999987655 7889999999998888 689999999988
Q ss_pred HcCCCCCHhHHHHHHHHHHhcC---------CHhHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHh
Q 046930 238 DLGLVADEFVYATLIDGVCRRG---------DLDCAFRLLEDM-EKKGIKPSIVTYNTIINGLCK 292 (965)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~g~~~~~~~~~~l~~~~~~ 292 (965)
+.. +.+...+..++.+|.+.| .+++|+++|+++ .+..+ .....|..+...+..
T Consensus 303 ~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 303 QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQS 365 (382)
T ss_dssp TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHH
T ss_pred ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHH
Confidence 443 567788889999998874 258999999998 66522 245567777666543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-17 Score=169.61 Aligned_cols=282 Identities=11% Similarity=0.006 Sum_probs=211.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
+...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|+++++.. |.+..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~ 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAA 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHH
Confidence 34457788899999999999999999999988 7899999999999999999999999999999976 678889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHH-HH-HHHhcCCHHHHHHHHHHHHH
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTIL-LD-GFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~~~~~~ 203 (965)
++.++...|++++|...++++.+..+........ + ....|+......+ .. .+...|++++|...++++.+
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV--N------LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHH--H------hHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 9999999999999999999999864321100000 0 0000111111122 22 36778899999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 046930 204 DRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTY 283 (965)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 283 (965)
..+. +..++..++.++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... +..++
T Consensus 167 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 243 (327)
T 3cv0_A 167 MNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVM 243 (327)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHH
Confidence 7544 78888889999999999999999999998875 556778888889999999999999999988875322 45555
Q ss_pred HHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC-----------CHHHHHHHH
Q 046930 284 NTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQM-----------DIVMCNILI 352 (965)
Q Consensus 284 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~ 352 (965)
..++..+...|++++| +..++++....+.. +...+..+.
T Consensus 244 ~~l~~~~~~~g~~~~A------------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLA------------------------------AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293 (327)
T ss_dssp HHHHHHHHHTTCHHHH------------------------------HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHH------------------------------HHHHHHHHHhCCccccccccchhhcCHHHHHHHH
Confidence 5555555555555554 44555554443221 466788888
Q ss_pred HHHHhcCCHHHHHHHHHHchh
Q 046930 353 KALFMVGALEDARALYQAMPE 373 (965)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~ 373 (965)
..+...|++++|..+++...+
T Consensus 294 ~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 294 MLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 888899999999888876654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=155.69 Aligned_cols=200 Identities=16% Similarity=0.067 Sum_probs=162.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
|+++..+..++..+...|++++|+..|+++++.+ |.++.++..++.++.+.|++++|+..|+++++.+ |.+...+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 5677788899999999999999999999999998 8899999999999999999999999999999987 7778899
Q ss_pred HHHHHHHHhc-----------CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 046930 124 TSLVIALCML-----------GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIE 192 (965)
Q Consensus 124 ~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 192 (965)
..++.++... |++++|+..|+++++..| .+..+|..+..++...|+++
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P---------------------~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP---------------------RYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc---------------------ccHHHHHHHHHHHHHcCChH
Confidence 9999999999 999999999999987642 45788888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 046930 193 KAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDME 272 (965)
Q Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 272 (965)
+|+..|+++++.. .+...+..+..++...|++++|+..|+++.+.. +.+...+..+..++...|++++|...|++.-
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999887 588888899999999999999999999998876 5577788888888889999999988887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-16 Score=157.95 Aligned_cols=259 Identities=8% Similarity=0.007 Sum_probs=212.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHh
Q 046930 183 DGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLD 262 (965)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 262 (965)
+-....|++..|+..++......+.+.......+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 34566899999999998765443222234556778999999999999987755 2 3667778888899999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCC
Q 046930 263 CAFRLLEDMEKKGIKP-SIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGI 341 (965)
Q Consensus 263 ~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 341 (965)
+|++.++++...+..| +...+..+...+...|++++|++.++. +.+..++..++..+.+.|++++|++.++.+.+..
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 9999999999876444 567788888999999999999999998 8889999999999999999999999999998875
Q ss_pred CCCHHHH---HHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 046930 342 QMDIVMC---NILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYN 418 (965)
Q Consensus 342 ~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (965)
|+.... ..++..+...|++++|..+|+++.+.. +.+..+++.++.++...|++++|+..|+++++..|.++.++.
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 332211 123344445689999999999998874 567889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHh
Q 046930 419 CIINGLCKSGMVDM-ATEVFIELNEKGLSLYVGM 451 (965)
Q Consensus 419 ~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~ 451 (965)
.++..+...|+.++ +..+++++++. .|+...
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~ 270 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF 270 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH
Confidence 99999999999876 57888998876 555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=155.08 Aligned_cols=200 Identities=14% Similarity=0.074 Sum_probs=169.2
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...++.++..+ ...|++++|+..|++++... |.++.++..++.++.+.|++++|+..|+++++.+ |.++.+
T Consensus 2 p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQL-YALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART---PRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred CCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHH
Confidence 77888999999987 89999999999999999865 5678899999999999999999999999999999 889999
Q ss_pred HHHHHHHHHhc-----------CChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccch
Q 046930 87 CSSVVSGFCKI-----------GKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155 (965)
Q Consensus 87 ~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (965)
+..++.++... |++++|+..|+++++.+ |.+...+..++.++...|++++|+..|+++++..
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----- 148 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE----- 148 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----
Confidence 99999999999 99999999999999987 7788899999999999999999999999998741
Q ss_pred hhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 046930 156 VFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKK 235 (965)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 235 (965)
.++..+..+..++...|++++|...|+++++..+. +...+..+..++...|++++|+..|++
T Consensus 149 -----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 149 -----------------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred -----------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 56888999999999999999999999999997654 788899999999999999999999987
Q ss_pred HH
Q 046930 236 VE 237 (965)
Q Consensus 236 ~~ 237 (965)
..
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 64
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-15 Score=153.05 Aligned_cols=230 Identities=11% Similarity=0.062 Sum_probs=198.8
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc----
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---- 83 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 83 (965)
.....|..++..+ ...|++++|+..|+.++... .+..++..++.++...|++++|+..|+.+++.++..+++
T Consensus 3 ~~a~~~~~~g~~~-~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 3 SMADKEKAEGNKF-YKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 3456788888887 89999999999999999876 667889999999999999999999999999876311111
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC 163 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~ 163 (965)
..++..++.++...|++++|+..|++++... |+. ..+...|++++|...++++....
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~-------~~~~~~~~~~~a~~~~~~~~~~~------------- 135 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH---RTA-------DILTKLRNAEKELKKAEAEAYVN------------- 135 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCH-------HHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC---chh-------HHHHHHhHHHHHHHHHHHHHHcC-------------
Confidence 6899999999999999999999999999864 453 44667788999999999998753
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 046930 164 GQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVA 243 (965)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 243 (965)
+.+...+..++..+...|++++|...|+++++..+. +..++..++.++...|++++|+..|+++.+.. +.
T Consensus 136 --------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~ 205 (258)
T 3uq3_A 136 --------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PN 205 (258)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred --------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HH
Confidence 135678889999999999999999999999987544 78899999999999999999999999999886 55
Q ss_pred CHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 244 DEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 244 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
+...+..+..++.+.|++++|...+++..+.
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7888999999999999999999999998875
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-15 Score=160.89 Aligned_cols=223 Identities=12% Similarity=0.010 Sum_probs=170.4
Q ss_pred chhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhCCCCCCHh
Q 046930 620 DVVDYSTIVAALCREG---YVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQ----GCFVEAFRLFDSLERIDMVPSEV 692 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~ 692 (965)
++.++..++..|.+.| +.++|+..|++..+.|.. +...+..|+..|... +++++|+.+|++.. . -++.
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHH
Confidence 3458888999999999 999999999999998744 666667788888665 79999999999987 3 3456
Q ss_pred hHHHHHHH-H--HccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHhhhCCCCCChhHH
Q 046930 693 SYATLIYN-L--CKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFG-----QLEEAFKFLHDLKINCLEPDKFTV 764 (965)
Q Consensus 693 ~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~ 764 (965)
.+..|... + ...+++++|+++|++..+.| +...+..|+.+|. .| ++++|+..|++.. ..+..++
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~ 321 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAAD 321 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHH
Confidence 67777766 4 56899999999999999876 7778889999887 56 9999999999987 2356788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCcchhhhhccc
Q 046930 765 SAVINGFCQ----KGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCT----KGRMEEARSILREMLQSKSVLELINRVD 836 (965)
Q Consensus 765 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 836 (965)
..|+..|.. ..++++|+++|++..+.| +......|+.+|.. ..+.++|..+|+++.+.+.
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--------- 389 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--------- 389 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC---------
Confidence 888888865 349999999999997755 23346678888874 4589999999999988532
Q ss_pred cccccccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 046930 837 IEVESESVLNFLISLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 837 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 869 (965)
+........+......++.++|..++++...
T Consensus 390 --~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 --PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp --HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1222222222223345678888888877543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-15 Score=150.55 Aligned_cols=253 Identities=11% Similarity=-0.016 Sum_probs=200.3
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
+...+...+..+ ...|++++|+..|+.+++.. +.+..++..++.++...|++++|+..|+.+++..........++.
T Consensus 2 n~~~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFL-FKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHH-HTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHH
T ss_pred cHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 345666777776 79999999999999999866 345668889999999999999999999999984321123355689
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++.++...|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+++++..
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------ 138 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------------------ 138 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS------------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC------------------
Confidence 99999999999999999999999976 6777899999999999999999999999988753
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGK---LEEAFTVFKKVEDLG-LVAD 244 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~ 244 (965)
+.+..+|..+...+...+++++|.+.|+++++..+. +...+..+..++...|+ +++|...|+++.+.. ..|+
T Consensus 139 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 139 ---TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 245777888883444456999999999999987544 57888888888888888 888999999887652 1122
Q ss_pred ------HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046930 245 ------EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIING 289 (965)
Q Consensus 245 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 289 (965)
..+|..+...|...|++++|...|+++.+..+. +...+..+...
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~ 264 (272)
T 3u4t_A 215 KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDGLKMK 264 (272)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHHhhhh
Confidence 257778889999999999999999999987433 55555554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=164.31 Aligned_cols=349 Identities=12% Similarity=0.025 Sum_probs=202.2
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNM---SRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
+...+ .+.|++++|+..|+.+.+. | ++.++..++.+|...|+. ++|+..|+++.+. ++.++..++.
T Consensus 9 la~~~-~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------~~~A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEA-LKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------SPRAQARLGR 77 (452)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC----------------------------------CHHHHHH
T ss_pred HHHHH-HhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------CHHHHHHHHH
Confidence 44444 5677777777777776653 2 344455666666667776 7777777777643 3356667777
Q ss_pred HHHhcC-----ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHH---HHHHHHHHCCCccchhhhhhHHhh
Q 046930 93 GFCKIG-----KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVN---ELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 93 ~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
.+...| ++++|+.+|+++.+.+ ++.++..++..|...+..+++. +.+.+..+.
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--------------- 138 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--------------- 138 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH---------------
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC---------------
Confidence 555554 6667777777777643 3336666777776666544333 333333321
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCC
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKG---KLEEAFTVFKKVEDLGL 241 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 241 (965)
.++..+..|...|...+.++++........+.-...++.++..+..+|...| ++++|+..|++..+.|
T Consensus 139 --------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g- 209 (452)
T 3e4b_A 139 --------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG- 209 (452)
T ss_dssp --------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-
T ss_pred --------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-
Confidence 2345555666666666644433333222221111123336666666777777 6777777777777766
Q ss_pred CCCHhHHHHHHHHHHhc----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHH
Q 046930 242 VADEFVYATLIDGVCRR----GDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLL 317 (965)
Q Consensus 242 ~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~ 317 (965)
+++...+..+...|... +++++|..+|++.. . -+...+..+...|...
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~------------------------ 261 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDF------------------------ 261 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHS------------------------
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhC------------------------
Confidence 44555545556555443 56777777777665 2 1334444444432210
Q ss_pred HHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHH
Q 046930 318 HGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVG-----ALEDARALYQAMPEMNLVANSVTYSTMIDGYCK 392 (965)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (965)
...+++++|+..|++..+.+ +...+..|...|. .| ++++|..+|++.. . .+..+...|...|..
T Consensus 262 ---~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 262 ---PELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRR 330 (452)
T ss_dssp ---GGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHT
T ss_pred ---CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHC
Confidence 23567778888888887766 5677777777776 55 8999999999888 3 466777778877766
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 046930 393 ----LGRIEEALEIFDELRRMSISSVACYNCIINGLCK----SGMVDMATEVFIELNEKG 444 (965)
Q Consensus 393 ----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 444 (965)
..++++|...|++..+.+ +..+...++.+|.. ..++++|..+|+...+.|
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 348999999999888754 45567788888874 457888999998888776
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-15 Score=155.09 Aligned_cols=218 Identities=10% Similarity=0.035 Sum_probs=188.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC-hhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK-PELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
..++..++.++...|++++|+..|+++++.+ |.+..+|+.++.++...|+ +++|+..|++++..+ |.+..+|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 4578888899999999999999999999999 8899999999999999997 999999999999987 778889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
++.++...|++++|+..|+++++.++ .+..+|..+..++.+.|++++|+..|+++++.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP---------------------~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDA---------------------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 230 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCc---------------------cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 99999999999999999999998653 578899999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHh-cCChHHH-----HHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCC
Q 046930 206 LRPNLITYTAIIFGFCK-KGKLEEA-----FTVFKKVEDLGLVADEFVYATLIDGVCRRG--DLDCAFRLLEDMEKKGIK 277 (965)
Q Consensus 206 ~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~ 277 (965)
+. +..+|+.+..++.. .|..++| +..|++++... +.+...|+.+...+...| ++++|...+.++ +. .+
T Consensus 231 P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p 306 (382)
T 2h6f_A 231 VR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SH 306 (382)
T ss_dssp TT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TC
T ss_pred CC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CC
Confidence 65 88999999999998 5665777 58899988876 557888988888888877 688899888887 33 23
Q ss_pred CCHHHHHHHHHHHHhcC
Q 046930 278 PSIVTYNTIINGLCKVG 294 (965)
Q Consensus 278 ~~~~~~~~l~~~~~~~g 294 (965)
.+...+..++.+|.+.|
T Consensus 307 ~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDML 323 (382)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 35667777777776654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-15 Score=148.22 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=178.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC--CCC----HhhH
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM--VPS----EVSY 694 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 694 (965)
...+..++..+...|++++|+..|+++.+.. .+...+..++.+|...|++++|+..+.++++... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 5677888888999999999999999988876 5788888899999999999999999998887431 112 4678
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHh
Q 046930 695 ATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQ 773 (965)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 773 (965)
..+..++...|++++|++.|+++++. .|+ ...+...|++++|+..++++... .| +..++..++..+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 88888899999999999999998874 444 34566778889999999998874 56 45678888888889
Q ss_pred cCCHHHHHHHHHHhHhCCCCCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccc-cccHHHHHHHh
Q 046930 774 KGDMEGALGFFLDFNTKGVSPD-FLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVE-SESVLNFLISL 851 (965)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 851 (965)
.|++++|++.|+++++ ..|+ ...+..++.++...|++++|...++++++. .|+ ...+..++..+
T Consensus 152 ~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------------DPNFVRAYIRKATAQ 217 (258)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------------CHHHHHHHHHHHHHH
Confidence 9999999999999876 4454 445888898999999999999999998873 343 44566777788
Q ss_pred hhcCcHHHHHHHHHHHhhc
Q 046930 852 CEQGSILEAIAILDEIGYM 870 (965)
Q Consensus 852 ~~~g~~~~A~~~~~~~~~~ 870 (965)
...|++++|++.+++....
T Consensus 218 ~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 218 IAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 8899999999998886543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-14 Score=142.97 Aligned_cols=203 Identities=13% Similarity=-0.002 Sum_probs=157.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|++.|++++... +.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHH
Confidence 4567777788888888888888888888877 6777888888888888888888888888888765 5667778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
+.++...|++++|+..|+++.+.+. .+.+...+..++.++...|++++|...|+++.+..+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTL-------------------YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTT-------------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCcc-------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 8888888888888888888876111 012466777788888888888888888888887643
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046930 207 RPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKG 275 (965)
Q Consensus 207 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 275 (965)
. +...+..++.++...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 173 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 173 N-QPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3 57777788888888888888888888887764 4566677777788888888888888888887763
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-15 Score=147.40 Aligned_cols=201 Identities=15% Similarity=0.149 Sum_probs=105.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
.+..+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|++++... +.+...+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 96 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYG 96 (243)
T ss_dssp --------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHH
Confidence 34445555555566666666666666665554 4555566666666666666666666666665544 445555555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
++.++...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++.+..
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG---------------------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT---------------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 6666666666666666666655432 1344555555566666666666666666665543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 206 LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 206 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
+. +...+..++.++...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 156 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 156 EN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 22 45555556666666666666666666665553 334555566666666666666666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=154.81 Aligned_cols=249 Identities=13% Similarity=0.019 Sum_probs=195.3
Q ss_pred HccCCchHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTL--PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK 99 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 99 (965)
...|++++|+..|+.++...+.. .+..++..++.++...|++++|+..|+++++.+ |.+..++..++.+|...|+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTC
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHccC
Confidence 45688999999999988753322 246778899999999999999999999999998 7889999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHH
Q 046930 100 PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYT 179 (965)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 179 (965)
+++|+..|++++... |.+..++..++.++...|++++|...|+++.+.. |+.....
T Consensus 93 ~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----------------------~~~~~~~ 148 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----------------------PNDPFRS 148 (275)
T ss_dssp HHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCHHHH
T ss_pred HHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------CCChHHH
Confidence 999999999999976 6678899999999999999999999999998753 3333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CCHhHHHHHHHHHH
Q 046930 180 ILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV---ADEFVYATLIDGVC 256 (965)
Q Consensus 180 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~ 256 (965)
..+..+...|++++|...|.+.....+. +...+. ++..+...++.++|...+..+...... .+...+..+..++.
T Consensus 149 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 226 (275)
T 1xnf_A 149 LWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL 226 (275)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 4445556779999999999888876433 444443 666777888899999999988755311 12567888899999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 046930 257 RRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVS 303 (965)
Q Consensus 257 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 303 (965)
+.|++++|...|+++....+. + +.....++...|++++|++.+
T Consensus 227 ~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 227 SLGDLDSATALFKLAVANNVH-N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCHHHHHHHHHHHHTTCCT-T---CHHHHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHhCCch-h---HHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999987422 2 223345666677777776554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-14 Score=142.29 Aligned_cols=226 Identities=10% Similarity=-0.047 Sum_probs=192.3
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCCHhh
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCR----QGCFVEAFRLFDSLERIDMVPSEVS 693 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 693 (965)
+.++.++..++..+...|++++|+..|++..+.+ +..++..++..|.. .+++++|+..|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3468888999999999999999999999998843 56788889999999 999999999999999865 6778
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCChhHHH
Q 046930 694 YATLIYNLCK----EGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCK----FGQLEEAFKFLHDLKINCLEPDKFTVS 765 (965)
Q Consensus 694 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 765 (965)
+..+...|.. .+++++|++.|++..+.+ +...+..++.+|.. .|++++|+..|+++.+.+ +..++.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8888888998 999999999999999864 77889999999999 999999999999999854 566788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCcchhhhhcccc
Q 046930 766 AVINGFCQ----KGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCT----KGRMEEARSILREMLQSKSVLELINRVDI 837 (965)
Q Consensus 766 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 837 (965)
.++..|.. .+++++|++.|++..+.+ +...+..++.++.. .|++++|+..|+++++..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------- 216 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----------- 216 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-----------
Confidence 88888887 899999999999998753 34567889999999 999999999999998732
Q ss_pred ccccccHHHHHHHhhh----cCcHHHHHHHHHHHhhcc
Q 046930 838 EVESESVLNFLISLCE----QGSILEAIAILDEIGYML 871 (965)
Q Consensus 838 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 871 (965)
| ......++..+.. .|++++|++.|++.....
T Consensus 217 -~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 217 -N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp -C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred -C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 2 4466777777877 899999999999875543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-14 Score=138.69 Aligned_cols=205 Identities=11% Similarity=0.049 Sum_probs=95.2
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...|..++..+ ...|++++|+..|+.++... +.+..++..++.++...|++++|+..|+.+++.+ |.+..+
T Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~ 78 (225)
T 2vq2_A 5 NQVSNIKTQLAMEY-MRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK---PDSAEI 78 (225)
T ss_dssp CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred cccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCChHH
Confidence 34444444444444 44555555555555554433 2334444445555555555555555555555544 444445
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 87 CSSVVSGFCKI-GKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 87 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
+..++.++... |++++|+..|++++..+..+.+...+..++.++...|++++|+..|+++.+..
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------- 143 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--------------- 143 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 55555555555 55555555555554411012223344444555555555555555555544431
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 166 MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
+.+..++..++.++...|++++|...|+++.+..+..+...+..+...+...|+.+.|..+++.+.+
T Consensus 144 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 144 ------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp ------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1224444444444445555555555555444433212344444444444444444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=145.43 Aligned_cols=214 Identities=14% Similarity=0.081 Sum_probs=170.3
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
..+..|..++..+ ...|++++|+..|++++... +.+..++..++.++...|++++|+..|+.+++.+ |.+..++
T Consensus 21 ~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~ 94 (243)
T 2q7f_A 21 MASMTGGQQMGRG-SEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD---SSAATAY 94 (243)
T ss_dssp ----------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred hHHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CcchHHH
Confidence 4455788888877 79999999999999988754 5678889999999999999999999999999988 7889999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhh
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMV 167 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (965)
..++.++...|++++|++.|+++++.. +.+...+..++.++...|++++|...++++.+..
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 155 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN----------------- 155 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------
Confidence 999999999999999999999999876 6778899999999999999999999999998753
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhH
Q 046930 168 DKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFV 247 (965)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 247 (965)
+.+...+..++..+...|++++|...|+++.+..+. +..++..+..++...|++++|...++++.+.. +.+...
T Consensus 156 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~ 229 (243)
T 2q7f_A 156 ----ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLA 229 (243)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred ----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHH
Confidence 246788999999999999999999999999987543 68889999999999999999999999999875 445555
Q ss_pred HHHHH
Q 046930 248 YATLI 252 (965)
Q Consensus 248 ~~~l~ 252 (965)
+..+.
T Consensus 230 ~~~~~ 234 (243)
T 2q7f_A 230 LHAKK 234 (243)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 54443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-14 Score=140.38 Aligned_cols=203 Identities=13% Similarity=0.004 Sum_probs=168.9
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
...|..++..+ ...|++++|+..|++++... +.+..++..++.++...|++++|++.|+.+++.+ |.+..++..
T Consensus 37 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGY-LQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD---SRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHH-HHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHH
Confidence 56777788776 78899999999999988865 4567888888999999999999999999998887 678888999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhc
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDK 169 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 169 (965)
++.++...|++++|+..|++++..+..+.+...+..++.++...|++++|...|+++.+..
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------- 171 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN------------------- 171 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------
Confidence 9999999999999999999988721124456688888888999999999999999988753
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 170 GIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 170 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
+.+..++..++..+...|++++|...|+++.+..+ .+...+..+...+...|++++|.+.++++.+..
T Consensus 172 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 172 --RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp --SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 24577888888899999999999999999887644 367778888888899999999999999988874
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-13 Score=138.60 Aligned_cols=226 Identities=15% Similarity=0.071 Sum_probs=191.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCC
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS----QGNMSRAVEVLELMSDENVKYPF 82 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 82 (965)
|.++..++.++..+ ...|++++|+..|++++. +.++.++..++.+|.. .+++++|+..|+++.+.+
T Consensus 3 ~~~~~a~~~lg~~~-~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKS-YKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----- 72 (273)
T ss_dssp --CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred CCChHHHHHHHHHH-HhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----
Confidence 55667888888877 788999999999999887 3456788888999999 999999999999998875
Q ss_pred chHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCccc
Q 046930 83 DNFVCSSVVSGFCK----IGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEGLKFD 154 (965)
Q Consensus 83 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 154 (965)
++.++..++.+|.. .+++++|+..|+++.+. .++.++..++.+|.. .+++++|+..|+++.+.
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----- 143 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----- 143 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----
Confidence 56788999999999 99999999999999884 377888899999998 99999999999998874
Q ss_pred hhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 046930 155 VVFYSCWICGQMVDKGIKPDTVSYTILLDGFSK----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK----KGKL 226 (965)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 226 (965)
.+..++..+...|.. .+++++|...|++..+.+ +..++..+..+|.. .+++
T Consensus 144 ------------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 144 ------------------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp ------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred ------------------CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 356777788888887 899999999999998864 56778888888988 8999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHHHCC
Q 046930 227 EEAFTVFKKVEDLGLVADEFVYATLIDGVCR----RGDLDCAFRLLEDMEKKG 275 (965)
Q Consensus 227 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 275 (965)
++|+..|++..+.+ +...+..+..+|.. .+++++|...|++..+.|
T Consensus 203 ~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999999998875 25677778888888 899999999999988875
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-14 Score=147.65 Aligned_cols=255 Identities=11% Similarity=0.014 Sum_probs=185.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC--HhhHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN--VVSYT 124 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ 124 (965)
+..+...+..+...|++++|+..|+.+++.+ |.+..++..++.+|...|++++|+..|++++... ..++ ..+|.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHH
Confidence 4456778888999999999999999999988 7788899999999999999999999999999832 1111 23488
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.++.++...|++++|+..|+++.+..+ .+..+|..++..|...|++++|...|+++++.
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDT---------------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST---------------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCc---------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 899999999999999999999987532 45678889999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC---HhHHHHHHHHHHHCC-CCCCH
Q 046930 205 RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGD---LDCAFRLLEDMEKKG-IKPSI 280 (965)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~~~~ 280 (965)
.+. +...+..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+.
T Consensus 138 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 215 (272)
T 3u4t_A 138 TTT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215 (272)
T ss_dssp SCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG
T ss_pred CCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc
Confidence 433 67777777734445569999999999998875 4457777778888888887 778888888876531 11221
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 046930 281 VTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIK 353 (965)
Q Consensus 281 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 353 (965)
. -..+ ..++..+...|...|++++|+..++++.+.. +.+......+..
T Consensus 216 ~-~~~~-----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 216 Y-KDEL-----------------------IEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp G-HHHH-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred c-hHHH-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 0 0000 1123344555556666666666666666654 234444444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-14 Score=148.20 Aligned_cols=224 Identities=13% Similarity=-0.000 Sum_probs=178.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 046930 619 MDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLI 698 (965)
Q Consensus 619 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 698 (965)
.+..++..++..+...|++++|+..|+++.+..+ .+..+|..++.+|...|++++|+..|+++++.. +.+...+..++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la 118 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHH
Confidence 4678889999999999999999999999998854 378899999999999999999999999999864 23478899999
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHH
Q 046930 699 YNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDME 778 (965)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 778 (965)
.+|...|++++|++.|+++++. .|+..........+...|++++|...++++... .+++...+ .++..+...++.+
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 194 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQ 194 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHH
Confidence 9999999999999999999985 455444445555667789999999999888874 23344444 4777778889999
Q ss_pred HHHHHHHHhHhCCCCCC-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhh
Q 046930 779 GALGFFLDFNTKGVSPD-----FLGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCE 853 (965)
Q Consensus 779 ~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 853 (965)
+|++.++++.+ ..|. ...+..++.++...|++++|...|+++++ ..|+. +......+..
T Consensus 195 ~a~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------------~~p~~--~~~~~~~~~~ 258 (275)
T 1xnf_A 195 TLMERLKADAT--DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA------------NNVHN--FVEHRYALLE 258 (275)
T ss_dssp HHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------TCCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHhc--ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------CCchh--HHHHHHHHHH
Confidence 99999999854 4443 35588899999999999999999999998 34433 2333556778
Q ss_pred cCcHHHHHHHH
Q 046930 854 QGSILEAIAIL 864 (965)
Q Consensus 854 ~g~~~~A~~~~ 864 (965)
.|++++|++.+
T Consensus 259 l~~~~~a~~~~ 269 (275)
T 1xnf_A 259 LSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHC----
T ss_pred HHHHHhhHHHH
Confidence 89999999887
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=136.47 Aligned_cols=206 Identities=13% Similarity=0.043 Sum_probs=180.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.++.++..++..+...|++++|++.|+.+++.+ |.+..++..++.++...|++++|++.|++++... |.+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~ 79 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEIN 79 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHH
Confidence 3456778889999999999999999999999988 7888999999999999999999999999999876 6778899
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046930 124 TSLVIALCML-GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMI 202 (965)
Q Consensus 124 ~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 202 (965)
..++.++... |++++|...++++++.+. .+.+...+..++.++...|++++|...|+++.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPT-------------------YPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTT-------------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcC-------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 999999999999987211 12346788899999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 203 EDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
+..+. +...+..++.++...|++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 141 ~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 141 AAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 87544 688899999999999999999999999988763257778888888889999999999999998865
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=130.11 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=97.7
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
++.+|+.++..+ ...|++++|+..|+++++.. |.+..++..++.+|.+.|++++|+..+..+.... |.+..++.
T Consensus 4 ~~~iy~~lG~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKK-RTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHH
T ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHH
Confidence 445566666655 55566666666666666554 3445555566666666666666666666665555 45555666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++..+...++++.|...+.++.... |.+..++..++.++.+.|++++|++.|+++++..+
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p----------------- 138 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP----------------- 138 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-----------------
Confidence 66666666666666666666666554 44555555666666666666666666666555421
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.+..+|..++.+|.+.|++++|.+.|+++++.
T Consensus 139 ----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 ----GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 34555555666666666666666666666553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-13 Score=129.43 Aligned_cols=167 Identities=18% Similarity=0.188 Sum_probs=136.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
++.+|..++.+|...|++++|++.|+++++.+ |.++.++..++.+|...|++++|+..++++.... +.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHH
Confidence 56678888888888888888888888888888 7788888888888888888888888888888766 666777888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
++..+...++++.|...+.++.+.. +.+..++..+..++.+.|++++|++.|+++++..
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~---------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN---------------------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---------------------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 8888888888888888888887653 2457778888888888888888888888888775
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 206 LRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 206 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
+. +..+|..++.++.+.|++++|+..|+++.+.
T Consensus 138 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 PG-FIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ch-hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 44 6778888888888888888888888888776
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=166.46 Aligned_cols=151 Identities=9% Similarity=0.020 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHH
Q 046930 655 NIVTYNTVIHSLCRQGCFVEAFRLFDSLER---IDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNS 731 (965)
Q Consensus 655 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 731 (965)
-..||++|+++|++.|++++|.++|++|.+ .|+.||..|||.|+++|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 446788888888888888888888877653 46778888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCH-HHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC------hHHHHHHHH
Q 046930 732 FIDGYCKFGQL-EEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPD------FLGFLYLVK 804 (965)
Q Consensus 732 l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~ 804 (965)
++.++++.|+. ++|.++|++|.+.|+.||..+|++++....+. ..++..+++ +-+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 88888888874 67778888888888888888888777655433 455555554 2344443 223333555
Q ss_pred HHhcCC
Q 046930 805 GLCTKG 810 (965)
Q Consensus 805 ~~~~~g 810 (965)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.2e-13 Score=137.10 Aligned_cols=239 Identities=11% Similarity=0.037 Sum_probs=192.4
Q ss_pred ccchhhHHHHHHHHHHcc----CCc----hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------cCCh-------h
Q 046930 7 PHQSRFFDSLIQGFCIKR----NDP----EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS-------QGNM-------S 64 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~ 64 (965)
|.+...|...+.- +.+. ++. +.|+..|++++... |.++..|..++..+.. .|++ +
T Consensus 5 ~~~~~~W~~yi~~-E~~~~~~~~~~~~~~~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 81 (308)
T 2ond_A 5 AQQVDMWKKYIQW-EKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHHH-HHTCTTCCCCHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhCcccCCchHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchH
Confidence 3455677777774 3443 233 68889999999876 5678888888877763 5886 8
Q ss_pred HHHHHHHHHHh-cCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh-hHHHHHHHHHhcCChhHHHHH
Q 046930 65 RAVEVLELMSD-ENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV-SYTSLVIALCMLGRVNEVNEL 142 (965)
Q Consensus 65 ~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~ 142 (965)
+|..+|+++++ .+ |.+..+|..++..+...|++++|...|+++++.. |.+.. +|..++..+.+.|++++|..+
T Consensus 82 ~A~~~~~rAl~~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 82 EAANIYERAISTLL---KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHTTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhC---cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999 56 7888999999999999999999999999999865 44554 899999999999999999999
Q ss_pred HHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 143 FVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFS-KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFC 221 (965)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (965)
|+++++.++ ++...|...+.... ..|++++|..+|+++++..+. +...|..++..+.
T Consensus 157 ~~~a~~~~p---------------------~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 214 (308)
T 2ond_A 157 FKKAREDAR---------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLS 214 (308)
T ss_dssp HHHHHTSTT---------------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHhcCC---------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 999987542 33445544443322 379999999999999987544 7888999999999
Q ss_pred hcCChHHHHHHHHHHHHcC-CCC--CHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 046930 222 KKGKLEEAFTVFKKVEDLG-LVA--DEFVYATLIDGVCRRGDLDCAFRLLEDMEKKG 275 (965)
Q Consensus 222 ~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 275 (965)
+.|++++|..+|+++.... .+| ....|..++....+.|+.+.|..+++++.+..
T Consensus 215 ~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999863 343 46788888988899999999999999998763
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-14 Score=153.13 Aligned_cols=279 Identities=11% Similarity=0.004 Sum_probs=201.8
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCC
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS--SFTFCSLVYSFCSQGNMSRAVEVLELMSDEN---VKYPF 82 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~ 82 (965)
.....+...+..+ ...|++++|+..|+.++...+..+. ..++..++.++...|++++|+..|++++... ...|.
T Consensus 7 ~~~~~l~~~g~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERL-CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHH-HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3344666777776 8999999999999999987532222 3578889999999999999999999876642 11145
Q ss_pred chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC----HhhHHHHHHHHHhcCC--------------------hhH
Q 046930 83 DNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN----VVSYTSLVIALCMLGR--------------------VNE 138 (965)
Q Consensus 83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~ 138 (965)
...++..++.++...|++++|+..|++++....-.++ ..++..++.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 5778999999999999999999999999875311122 3478889999999999 999
Q ss_pred HHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHH
Q 046930 139 VNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP-DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR-PN----LIT 212 (965)
Q Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~ 212 (965)
|...++++.+.. ...+..+ ...++..+...+...|++++|...|+++++.... ++ ..+
T Consensus 166 A~~~~~~al~~~----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (406)
T 3sf4_A 166 AVDFYEENLSLV----------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229 (406)
T ss_dssp HHHHHHHHHHHH----------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH----------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 999998877531 0111111 2457888899999999999999999998764111 12 236
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----HHH
Q 046930 213 YTAIIFGFCKKGKLEEAFTVFKKVEDLGLV-AD----EFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIK-PS----IVT 282 (965)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~ 282 (965)
+..+..++...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++....... .+ ..+
T Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 309 (406)
T 3sf4_A 230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 788889999999999999999988754211 11 457778888999999999999999887653111 01 234
Q ss_pred HHHHHHHHHhcCCcchHHHHH
Q 046930 283 YNTIINGLCKVGRTSDAEEVS 303 (965)
Q Consensus 283 ~~~l~~~~~~~g~~~~a~~~~ 303 (965)
+..+...+...|++++|...+
T Consensus 310 ~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 310 CWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 444444555555555544443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-14 Score=151.24 Aligned_cols=308 Identities=12% Similarity=0.022 Sum_probs=213.3
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHhH
Q 046930 378 ANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISS----VACYNCIINGLCKSGMVDMATEVFIELNEKGL-SLYVGMH 452 (965)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 452 (965)
.....+...+..+...|++++|+..|+++.+..|.+ ..++..++..+...|++++|+..+++++.... ..+..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-- 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL-- 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH--
Confidence 445566777788888888888888888888876666 35677888888888888888888887654210 00100
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhc
Q 046930 453 KIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNE 532 (965)
Q Consensus 453 ~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 532 (965)
....++..++..+...|++++|...+++++.......
T Consensus 85 -----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------- 121 (406)
T 3sf4_A 85 -----------------------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-------------- 121 (406)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------
T ss_pred -----------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--------------
Confidence 0113455666778888888888888887665210000
Q ss_pred CcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhh
Q 046930 533 GKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGA 612 (965)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 612 (965)
+
T Consensus 122 -~------------------------------------------------------------------------------ 122 (406)
T 3sf4_A 122 -D------------------------------------------------------------------------------ 122 (406)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -c------------------------------------------------------------------------------
Confidence 0
Q ss_pred hccCCCCchhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc----CCcc-cHHHHHHHHHHHH
Q 046930 613 EDSLPCMDVVDYSTIVAALCREGY--------------------VNKALDLCAFAKNK----GITV-NIVTYNTVIHSLC 667 (965)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~ 667 (965)
++....++..++..|...|+ +++|+..+++..+. +..+ ...++..++.+|.
T Consensus 123 ----~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 198 (406)
T 3sf4_A 123 ----KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY 198 (406)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 00013455666677777777 88888888776543 1111 2347888899999
Q ss_pred hcCcHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHH
Q 046930 668 RQGCFVEAFRLFDSLERIDM-VPS----EVSYATLIYNLCKEGQLLDAKKLFDRMVLK----GFKP-STRIYNSFIDGYC 737 (965)
Q Consensus 668 ~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~ 737 (965)
..|++++|+..++++++... .++ ..++..+..+|...|++++|++.++++++. +..+ ...++..++.+|.
T Consensus 199 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 199 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence 99999999999999876310 111 347888889999999999999999998763 1111 1567889999999
Q ss_pred hcCCHHHHHHHHHHhhhCC----CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCCh-HHHHHHHHHHh
Q 046930 738 KFGQLEEAFKFLHDLKINC----LEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPDF-LGFLYLVKGLC 807 (965)
Q Consensus 738 ~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~ 807 (965)
..|++++|...++++.+.. -.+. ..++..++.+|...|++++|++.++++++. +..+.. .++..++..+.
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 358 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQM 358 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 9999999999999887631 1111 457888999999999999999999998652 222322 33667777777
Q ss_pred cCCCHH
Q 046930 808 TKGRME 813 (965)
Q Consensus 808 ~~g~~~ 813 (965)
..|+..
T Consensus 359 ~~g~~~ 364 (406)
T 3sf4_A 359 VLGLSY 364 (406)
T ss_dssp HHHTTS
T ss_pred HhhHhH
Confidence 777654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-11 Score=134.91 Aligned_cols=433 Identities=10% Similarity=0.037 Sum_probs=253.4
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC---hhh
Q 046930 26 DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK---PEL 102 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~ 102 (965)
...+-+..|.+.+..+ |.+...|..+++.+.+.+.++.+..+|+.++... |.....|...+..-.+.|. ++.
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f---P~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF---PLMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhhCCcchHHH
Confidence 3456677788888877 5688999999999999999999999999999998 8899999999999999999 999
Q ss_pred HHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh--------hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCC-CC
Q 046930 103 AIGFFENAISLGALKPNVVSYTSLVIALCMLGRV--------NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGI-KP 173 (965)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 173 (965)
+.++|++++...+.+|++..|...+....+.++. +...++|+.++.. -|. .+
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~-------------------vG~~d~ 182 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK-------------------CAIFEP 182 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH-------------------TTTTCS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-------------------hCcccc
Confidence 9999999998642248999998888766555553 3344677776642 233 33
Q ss_pred -CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCChHHHH
Q 046930 174 -DTVSYTILLDGFS---------KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK-------------KGKLEEAF 230 (965)
Q Consensus 174 -~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~ 230 (965)
+...|...+.... .+++++.+..+|.+++......-..+|......-.. ..+++.|.
T Consensus 183 ~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar 262 (679)
T 4e6h_A 183 KSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNAR 262 (679)
T ss_dssp SCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHH
Confidence 3567777775543 244578899999999863222112333222111100 01222233
Q ss_pred HHHHHHHHc--CC----CCC-------------------HhHHHHHHHHHHhcC-------CHhHHHHHHHHHHHCCCCC
Q 046930 231 TVFKKVEDL--GL----VAD-------------------EFVYATLIDGVCRRG-------DLDCAFRLLEDMEKKGIKP 278 (965)
Q Consensus 231 ~~~~~~~~~--~~----~~~-------------------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~g~~~ 278 (965)
..+.++... ++ +.. ...|...+..--..+ ..+.+..+|++++.
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~----- 337 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ----- 337 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH-----
Confidence 333332211 00 000 011111111110000 00111222333322
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 046930 279 SIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGIL-ETKQRLEEAGIQMDIVMCNILIKALFM 357 (965)
Q Consensus 279 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (965)
..+.....|...+..+...|+.++|. +++++..... +.+...+..++....+
T Consensus 338 --------------------------~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~ 390 (679)
T 4e6h_A 338 --------------------------HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYEL 390 (679)
T ss_dssp --------------------------HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred --------------------------HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 23445555655555555556666664 6666665533 3344455555555566
Q ss_pred cCCHHHHHHHHHHchhCC---------Ccc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHH
Q 046930 358 VGALEDARALYQAMPEMN---------LVA------------NSVTYSTMIDGYCKLGRIEEALEIFDELRRM-SISSVA 415 (965)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 415 (965)
.|+++.|..+|+.+.+.. ..| ...+|...+....+.|..+.|..+|.++.+. .+....
T Consensus 391 ~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ 470 (679)
T 4e6h_A 391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD 470 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH
Confidence 666666666666655420 002 1235566666666666666677777666655 333344
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccc--cchhHHHHHHH
Q 046930 416 CYNCIINGLCKSG-MVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSE--IYDIICNDVIS 492 (965)
Q Consensus 416 ~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 492 (965)
.|...+..-.+.+ +.+.|..+|+..++. .+-+...+...+......|+.+.|..++++.....++ ....+|...+.
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444443333333 366666666666664 2333334445555555566666666666666665553 34467777777
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCC
Q 046930 493 FLCKRGSSEVASELYMFMRKRGS 515 (965)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~~~~~ 515 (965)
.-.+.|+.+.+.++.+++.+.-+
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 78888888888888888877654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-15 Score=164.89 Aligned_cols=152 Identities=19% Similarity=0.212 Sum_probs=128.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIE---DRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYA 249 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 249 (965)
.-..+||+||.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467899999999999999999999988764 4799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCH-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCC------HHHHHHHHHHhhh
Q 046930 250 TLIDGVCRRGDL-DCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGD------VVTYSTLLHGYIE 322 (965)
Q Consensus 250 ~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~l~~~~~~ 322 (965)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+-++...++..+..|. ..+...|...|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999984 789999999999999999999999988777766555555554444322 3344445555555
Q ss_pred cC
Q 046930 323 ED 324 (965)
Q Consensus 323 ~~ 324 (965)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.7e-14 Score=152.09 Aligned_cols=241 Identities=15% Similarity=0.055 Sum_probs=186.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCC-H
Q 046930 622 VDYSTIVAALCREGYVNKALDLCAFAKNK----GI-TVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVPS-E 691 (965)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~ 691 (965)
.++..++..|...|++++|+..|+++.+. +. +....++..++.+|...|++++|+..++++++. +-.+. .
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 57888999999999999999999988764 11 224467888999999999999999999998763 11222 5
Q ss_pred hhHHHHHHHHHccCC-----------------hHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 046930 692 VSYATLIYNLCKEGQ-----------------LLDAKKLFDRMVLK----GFKP-STRIYNSFIDGYCKFGQLEEAFKFL 749 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 749 (965)
.++..+...|...|+ +++|++.+++.++. +..+ ...++..++.+|...|++++|+..+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 578888899999999 99999999987652 2112 2457889999999999999999999
Q ss_pred HHhhhCCCCC---C----hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCC-hHHHHHHHHHHhcCCCHHHHHH
Q 046930 750 HDLKINCLEP---D----KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPD-FLGFLYLVKGLCTKGRMEEARS 817 (965)
Q Consensus 750 ~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~eA~~ 817 (965)
+++.+. .| + ..++..++.+|...|++++|++.|+++++. +..+. ...+..++.++...|++++|..
T Consensus 247 ~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (411)
T 4a1s_A 247 QERLRI--AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324 (411)
T ss_dssp HHHHHH--HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998763 22 1 237888999999999999999999998652 11111 3448889999999999999999
Q ss_pred HHHHHHhcCcchhhhhcccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHhhc
Q 046930 818 ILREMLQSKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYM 870 (965)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 870 (965)
+++++++..... +..+ ....+..++..+...|++++|++.+++....
T Consensus 325 ~~~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 325 YHNRHLAIAQEL------GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999998742211 0111 2335667777888999999999999986543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-14 Score=147.58 Aligned_cols=285 Identities=13% Similarity=0.053 Sum_probs=207.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCC-H
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGITVN----IVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVPS-E 691 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~ 691 (965)
...+...+..+...|++++|+..|+++.+.... + ...+..++.+|...|++++|++.++++++. +..|. .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566788889999999999999999887433 3 357888999999999999999999987653 21222 5
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCC----hhhHHHHHHHHHhcCC--------------------HHHHH
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLKG-FKPS----TRIYNSFIDGYCKFGQ--------------------LEEAF 746 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~--------------------~~~A~ 746 (965)
.++..+...+...|++++|++.++++++.. -.++ ..++..++.++...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 677888899999999999999999987631 0112 4478899999999999 99999
Q ss_pred HHHHHhhhC----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCC-hHHHHHHHHHHhcCCCHHHHH
Q 046930 747 KFLHDLKIN----CLEP-DKFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPD-FLGFLYLVKGLCTKGRMEEAR 816 (965)
Q Consensus 747 ~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~eA~ 816 (965)
..++++... +..| ...++..++..+...|++++|++.++++++. +..+. ...+..++..+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887642 1122 2347888999999999999999999998652 11111 125788999999999999999
Q ss_pred HHHHHHHhcCcchhhhhcccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhhhhhhhhhcc
Q 046930 817 SILREMLQSKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKLDECESL 895 (965)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (965)
..++++++..+.. +..+ ....+..++..+...|++++|+..+++.......
T Consensus 244 ~~~~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---------------------- 295 (338)
T 3ro2_A 244 EYYKKTLLLARQL------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---------------------- 295 (338)
T ss_dssp HHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh----------------------
Confidence 9999998742210 0111 1335666777888999999999999986321100
Q ss_pred ccccccccccccccCcccccccccccchhcccCCC-chhhhHHHHhhhccchHHHHHHHHHHHhccccc
Q 046930 896 NAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHD-FNFCYSKVASFCSKGELQKANKLMKEMLSSFKE 963 (965)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 963 (965)
.. . ++. ...+..++..|.+.|++++|...++++++..++
T Consensus 296 ---------------------------~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 ---------------------------LK-D-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp ---------------------------HT-C-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred ---------------------------cC-C-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 00 0 111 223344444499999999999999999998775
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.6e-14 Score=151.74 Aligned_cols=246 Identities=10% Similarity=0.015 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCCchHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS--SFTFCSLVYSFCSQGNMSRAVEVLELMSDEN---VKYPFDNFV 86 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 86 (965)
.+..++..+ ...|++++|+..|+.++...+..+. ..++..++.+|...|++++|+..|+++++.. ...+....+
T Consensus 50 ~l~~~g~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERL-CNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHH-HHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 455666666 7899999999999999987532221 2478899999999999999999999988751 001567788
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCC----CCCCHhhHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGA----LKPNVVSYTSLVIALCMLGR-----------------VNEVNELFVR 145 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~ 145 (965)
+..++.+|...|++++|+..|++++.... .+....++..++.++...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999987510 12234578899999999999 9999999888
Q ss_pred HHHCCCccchhhhhhHHhhhhhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHH
Q 046930 146 MESEGLKFDVVFYSCWICGQMVDKGIK-PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR-PN----LITYTAIIFG 219 (965)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~ 219 (965)
..+... ..+.. ....++..+...+...|++++|...|+++++.... ++ ..++..+..+
T Consensus 209 al~~~~----------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 209 NLKLMR----------------DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272 (411)
T ss_dssp HHHHHH----------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 765310 11111 12457888889999999999999999998764211 11 2367788899
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-----CCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 220 FCKKGKLEEAFTVFKKVEDLGLV-----ADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 220 ~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
+...|++++|...|+++.+.... ....++..+...+...|++++|..++++....
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988754211 11457778888899999999999999887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=151.11 Aligned_cols=215 Identities=14% Similarity=-0.008 Sum_probs=186.9
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHH
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNM-SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIG 105 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 105 (965)
++.|+..+....... +.+...+..++.++...|++ ++|+..|+++++.+ |.+..+|..++.+|...|++++|++
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456666777655433 45788899999999999999 99999999999998 8899999999999999999999999
Q ss_pred HHHHHHHcCCCCCCHhhHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHH
Q 046930 106 FFENAISLGALKPNVVSYTSLVIALCML---------GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTV 176 (965)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 176 (965)
.|+++++.. |+...+..++.++... |++++|+..|+++++.. +.+..
T Consensus 159 ~~~~al~~~---p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~ 214 (474)
T 4abn_A 159 CFSGALTHC---KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---------------------VLDGR 214 (474)
T ss_dssp HHHHHHTTC---CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---------------------TTCHH
T ss_pred HHHHHHhhC---CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---------------------CCCHH
Confidence 999999865 6678999999999999 99999999999999864 24688
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 046930 177 SYTILLDGFSKE--------GTIEKAVGILNKMIEDRLR--PNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEF 246 (965)
Q Consensus 177 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 246 (965)
.|..+..+|... |++++|+..|+++++..+. .+...|..+..+|...|++++|+..|+++.+.. +.+..
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~ 293 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 899999999988 9999999999999987541 378899999999999999999999999999886 55677
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 247 VYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 247 ~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
.+..+..++...|++++|.+.+.++
T Consensus 294 a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 294 PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888889999999999888766444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-13 Score=148.81 Aligned_cols=215 Identities=9% Similarity=-0.021 Sum_probs=191.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 046930 62 NMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKP-ELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVN 140 (965)
Q Consensus 62 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 140 (965)
++++++..++...... |.+..++..++.++...|++ ++|++.|+++++.+ |.+..+|..++.+|...|++++|+
T Consensus 83 ~~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4667788888777666 78999999999999999999 99999999999987 677889999999999999999999
Q ss_pred HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHH
Q 046930 141 ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKE---------GTIEKAVGILNKMIEDRLRPNLI 211 (965)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~ 211 (965)
..|+++++. .|+..++..+..++... |++++|++.|+++++..+. +..
T Consensus 158 ~~~~~al~~----------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 214 (474)
T 4abn_A 158 TCFSGALTH----------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGR 214 (474)
T ss_dssp HHHHHHHTT----------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHhh----------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHH
Confidence 999999975 46778899999999999 9999999999999998654 788
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCC---CCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 046930 212 TYTAIIFGFCKK--------GKLEEAFTVFKKVEDLGLV---ADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSI 280 (965)
Q Consensus 212 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 280 (965)
.|..+..+|... |++++|+..|+++.+.. + .+...|..+..+|...|++++|...|++..+.... +.
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~ 292 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WP 292 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 999999999998 99999999999999875 3 58889999999999999999999999999987443 67
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHcCC
Q 046930 281 VTYNTIINGLCKVGRTSDAEEVSKGI 306 (965)
Q Consensus 281 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 306 (965)
..+..+..++...|++++|.+.+..+
T Consensus 293 ~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78888999999999999998877655
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-13 Score=144.41 Aligned_cols=238 Identities=11% Similarity=0.030 Sum_probs=176.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHccCChHHHHHHHHHHHHC--CCC---C-ChhhH
Q 046930 661 TVIHSLCRQGCFVEAFRLFDSLERI----DMVP-SEVSYATLIYNLCKEGQLLDAKKLFDRMVLK--GFK---P-STRIY 729 (965)
Q Consensus 661 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~-~~~~~ 729 (965)
..+..+...|++++|+..|+++.+. +-.+ ...++..+..+|...|++++|++.++++++. ... + ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3677888999999999999999874 1112 2467888999999999999999999998863 111 1 24578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCChHH-H
Q 046930 730 NSFIDGYCKFGQLEEAFKFLHDLKINCL-EPD----KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPDFLG-F 799 (965)
Q Consensus 730 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~-~ 799 (965)
+.++.+|...|++++|+..++++++... .++ ..++..++.+|...|++++|++.|+++++. +..|.... +
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8999999999999999999999876310 111 247889999999999999999999998762 33255444 8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccccc-ccHHHHHHHhhhcCc---HHHHHHHHHHHhhccCCCc
Q 046930 800 LYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVES-ESVLNFLISLCEQGS---ILEAIAILDEIGYMLFPTQ 875 (965)
Q Consensus 800 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~ 875 (965)
..++.++...|++++|...++++++..... ..|.. ..+..++..+...|+ +++|+.++++..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~------- 333 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKA-------GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM------- 333 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-------
Confidence 889999999999999999999998742211 01211 123445666778888 777777776530
Q ss_pred ccchhhhhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHH
Q 046930 876 RFGTDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLM 954 (965)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~ 954 (965)
. .|+....+..++. |...|++++|...|
T Consensus 334 --------------------------------------------------~-~~~~~~~~~~la~~y~~~g~~~~A~~~~ 362 (383)
T 3ulq_A 334 --------------------------------------------------L-YADLEDFAIDVAKYYHERKNFQKASAYF 362 (383)
T ss_dssp --------------------------------------------------C-HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------------------------C-HHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0 1222333333344 99999999999999
Q ss_pred HHHhccccc
Q 046930 955 KEMLSSFKE 963 (965)
Q Consensus 955 ~~~~~~~~~ 963 (965)
+++++..++
T Consensus 363 ~~al~~~~~ 371 (383)
T 3ulq_A 363 LKVEQVRQL 371 (383)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHH
Confidence 999986543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-10 Score=129.13 Aligned_cols=466 Identities=8% Similarity=-0.004 Sum_probs=313.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC---hh
Q 046930 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR---VN 137 (965)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~ 137 (965)
....+-+..|+..+..+ |.+...|..++..+.+.+.++.+..+|++++..- |.....|...+..-.+.++ ++
T Consensus 46 ~~~~d~i~~lE~~l~~n---p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ---PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp CCCSCHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHH
T ss_pred cCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHH
Confidence 44567788899999999 8999999999999999999999999999999874 7788899999998888898 99
Q ss_pred HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHC-CC-C
Q 046930 138 EVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTI--------EKAVGILNKMIED-RL-R 207 (965)
Q Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~ 207 (965)
.+..+|++.+...+ .+|++..|...+....+.++. +...++|+.++.. |. .
T Consensus 121 ~v~~lfeRal~~~~-------------------~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d 181 (679)
T 4e6h_A 121 VIEPVLARCLSKEL-------------------GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFE 181 (679)
T ss_dssp HHHHHHHHHTCSSS-------------------CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhcC-------------------CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCccc
Confidence 99999999987521 137788888777665554442 3455788887753 54 4
Q ss_pred C-CHHHHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 046930 208 P-NLITYTAIIFGFC---------KKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIK 277 (965)
Q Consensus 208 ~-~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 277 (965)
+ +...|...+.... .+++.+.+..+|+.++......-..+|......-...+. ..+.+++.+...
T Consensus 182 ~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~~---- 256 (679)
T 4e6h_A 182 PKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGELSA---- 256 (679)
T ss_dssp SSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH----
T ss_pred ccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhhH----
Confidence 4 4567777765543 234578899999999864222222344332221111111 113333322111
Q ss_pred CCHHHHHHHHHHHHh----cCCcchH----HH--HHcCCCC-------CHHHHHHHHHHhhhcC-------ChhHHHHHH
Q 046930 278 PSIVTYNTIINGLCK----VGRTSDA----EE--VSKGILG-------DVVTYSTLLHGYIEED-------NVNGILETK 333 (965)
Q Consensus 278 ~~~~~~~~l~~~~~~----~g~~~~a----~~--~~~~~~~-------~~~~~~~l~~~~~~~~-------~~~~a~~~~ 333 (965)
+ |...-..+.. .+..+.. .. ....+|+ ....|...+..--..+ ..+.+..+|
T Consensus 257 -~---y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y 332 (679)
T 4e6h_A 257 -Q---YMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY 332 (679)
T ss_dssp -H---HHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred -H---HHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence 0 0000000100 0011000 00 0000110 1234444444333322 123456778
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 046930 334 QRLEEAGIQMDIVMCNILIKALFMVGALEDAR-ALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMS-- 410 (965)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 410 (965)
++++... +.....|...+..+...|+.++|. .+|++.... ++.+...+...+......|+++.|..+|++++...
T Consensus 333 e~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 333 MQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 8888764 447888888888888899999997 999999874 35566678888999999999999999999998642
Q ss_pred ---------CC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHHc-CChhhH
Q 046930 411 ---------IS-----------SVACYNCIINGLCKSGMVDMATEVFIELNEK-GLSLYVGMHKIILQATFAK-GGVGGV 468 (965)
Q Consensus 411 ---------~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-g~~~~a 468 (965)
|. ...+|...+....+.|..+.|..+|.++++. + .+....+......-.+. ++.+.|
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHH
Confidence 32 2347888888888899999999999999886 2 22233333333222334 448999
Q ss_pred HHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc--chhcHHHHHHHHHhcCcchhhhhhhHHHH
Q 046930 469 LNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVV--TDQSYYSILKGLDNEGKKWLIGPLLSMFV 546 (965)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 546 (965)
..++.+..+..+.. ...|...+......|+.+.|..+|+.++.....+ ....|...+.--...|..+.+..+...+.
T Consensus 490 r~ife~~Lk~~p~~-~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 490 CKVLELGLKYFATD-GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988876654 3577888888899999999999999998876532 23466667777777899999999999999
Q ss_pred HhcCCCchHHHHHHHHHH
Q 046930 547 KENGLVEPMISKFLVQYL 564 (965)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~ 564 (965)
+..|.. +.+..+...|.
T Consensus 569 ~~~P~~-~~~~~f~~ry~ 585 (679)
T 4e6h_A 569 EKFPEV-NKLEEFTNKYK 585 (679)
T ss_dssp HHSTTC-CHHHHHHHHTC
T ss_pred HhCCCC-cHHHHHHHHhc
Confidence 998865 45555555553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-13 Score=143.83 Aligned_cols=246 Identities=12% Similarity=0.002 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCCchHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS--SFTFCSLVYSFCSQGNMSRAVEVLELMSDEN---VKYPFDNFV 86 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 86 (965)
.+...+..+ ...|++++|+..|++++...+..+. ...+..++..+...|++++|+..++++++.. ...+....+
T Consensus 7 ~l~~~g~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERL-CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHH-HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 455566665 7899999999999999987532221 4678899999999999999999999877651 111455778
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC----HhhHHHHHHHHHhcCC--------------------hhHHHHH
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPN----VVSYTSLVIALCMLGR--------------------VNEVNEL 142 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 142 (965)
+..++..+...|++++|+..|+++++...-.++ ..++..++.++...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999865311222 3378889999999999 9999999
Q ss_pred HHHHHHCCCccchhhhhhHHhhhhhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CHHHHHHH
Q 046930 143 FVRMESEGLKFDVVFYSCWICGQMVDKGIK-PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR-P----NLITYTAI 216 (965)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l 216 (965)
++++++... ..+.. ....++..+...+...|++++|...++++.+.... + ...++..+
T Consensus 166 ~~~a~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 229 (338)
T 3ro2_A 166 YEENLSLVT----------------ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229 (338)
T ss_dssp HHHHHHHHH----------------HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 888765310 11111 12457888888999999999999999998764111 1 12367788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 217 IFGFCKKGKLEEAFTVFKKVEDLGLV-AD----EFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 217 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++....
T Consensus 230 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 88899999999999999988754211 11 456777888889999999999999887653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=143.42 Aligned_cols=257 Identities=13% Similarity=0.063 Sum_probs=148.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCC
Q 046930 692 VSYATLIYNLCKEGQLLDAKKLFDRMVLK-------GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKIN------CLE 758 (965)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~ 758 (965)
.++..+...+...|++++|+.+++++++. ..+....++..++.+|...|++++|+..+++++.. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44455555555555555555555555541 11223455666677777777777777777666543 112
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHhC------CCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchh
Q 046930 759 P-DKFTVSAVINGFCQKGDMEGALGFFLDFNTK------GVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLE 830 (965)
Q Consensus 759 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 830 (965)
| ...++..++..|...|++++|++.++++++. +-.|.... +..++..+...|++++|..+++++++.....
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~- 186 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK- 186 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-
Confidence 3 2456777788888888888888888887653 22344433 8889999999999999999999998741100
Q ss_pred hhhccccccc-cccHHHHHHHhhhcCcHHHHHHHHHHHhhccCC----Ccccchhhhhhhhhhhhhhhcccccccccccc
Q 046930 831 LINRVDIEVE-SESVLNFLISLCEQGSILEAIAILDEIGYMLFP----TQRFGTDRAIETQNKLDECESLNAVASVASLS 905 (965)
Q Consensus 831 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (965)
..+..|. ...+..++..+...|++++|++.++++...... ............. .........
T Consensus 187 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 253 (311)
T 3nf1_A 187 ---LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA----------EEREECKGK 253 (311)
T ss_dssp ---SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH----------HHHHHC---
T ss_pred ---hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH----------HHHHHhcCc
Confidence 0001232 335667777889999999999999987643110 0000000000000 001112223
Q ss_pred ccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhcccccC
Q 046930 906 NQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLSSFKED 964 (965)
Q Consensus 906 ~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~~~~ 964 (965)
....+...+++..+.+.+... |+....+..++. |.+.|++++|++.|+++++..|++
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 311 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQG 311 (311)
T ss_dssp ----CCSCCCC---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--
T ss_pred hhhHHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcC
Confidence 445566667777777777665 555554544444 999999999999999999998863
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-12 Score=136.34 Aligned_cols=202 Identities=10% Similarity=0.029 Sum_probs=157.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCC
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKGI------TVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVPS 690 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~ 690 (965)
..++..++..|...|++++|+..++++.+... +....+++.++.+|...|++++|+..|+++++. +-.+.
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 56678888888899999999999888776411 112357888999999999999999999998763 11111
Q ss_pred -HhhHHHHHHHHHccCChHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCC-
Q 046930 691 -EVSYATLIYNLCKEGQLLDAKKLFDRMVLK----GF-KPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINC---LEPD- 760 (965)
Q Consensus 691 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~- 760 (965)
..++..+..+|...|++++|++.|+++++. +. +....++..++.+|...|++++|...++++.+.. -.|.
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 347888999999999999999999998872 23 3346778999999999999999999999987631 0222
Q ss_pred hhHHHHHHHHHHhcCC---HHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 761 KFTVSAVINGFCQKGD---MEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 761 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
...+..+...+...|+ +++|+.++++. +..|+... +..++..|...|++++|..+++++++.
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2345778888888998 88888888875 44555443 778999999999999999999999874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-12 Score=128.97 Aligned_cols=212 Identities=16% Similarity=0.069 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh-------cCCh-------hhHHHHHHHHHH-cCCCCCCHhhHHHHHH
Q 046930 64 SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK-------IGKP-------ELAIGFFENAIS-LGALKPNVVSYTSLVI 128 (965)
Q Consensus 64 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~l~~ 128 (965)
++|+.+|++++..+ |.++.+|..++..+.. .|++ ++|+..|++++. .. |.+...|..++.
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 68999999999998 8999999999998874 5886 999999999998 45 567779999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTV-SYTILLDGFSKEGTIEKAVGILNKMIEDRLR 207 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (965)
.+.+.|++++|..+|+++++..+ .+.. +|..++..+.+.|++++|..+|+++++..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 166 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIED---------------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 166 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSS---------------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred HHHhcCCHHHHHHHHHHHHhccc---------------------cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997531 2343 8999999999999999999999999987543
Q ss_pred CCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCC--CHHHH
Q 046930 208 PNLITYTAIIFGFC-KKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKG-IKP--SIVTY 283 (965)
Q Consensus 208 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~--~~~~~ 283 (965)
+...|...+.... ..|++++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++.+... .+| ....|
T Consensus 167 -~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 167 -RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp -CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred -CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4555554443322 3699999999999998875 5578889999999999999999999999999863 343 35567
Q ss_pred HHHHHHHHhcCCcchHHHHH
Q 046930 284 NTIINGLCKVGRTSDAEEVS 303 (965)
Q Consensus 284 ~~l~~~~~~~g~~~~a~~~~ 303 (965)
..++....+.|+.+.|..++
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 77776666666666665544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.5e-13 Score=150.85 Aligned_cols=170 Identities=12% Similarity=0.054 Sum_probs=153.9
Q ss_pred ccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch
Q 046930 5 SFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN 84 (965)
Q Consensus 5 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (965)
..|.+..+|+.|+..+ .+.|++++|+..|+++++.. +.+..++..++.+|.+.|++++|+..|+++++.+ |.+.
T Consensus 4 s~P~~a~al~nLG~~~-~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~ 77 (723)
T 4gyw_A 4 SCPTHADSLNNLANIK-REQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFA 77 (723)
T ss_dssp --CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred CCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH
Confidence 3588888999999988 89999999999999999876 5678889999999999999999999999999998 8899
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
.+|..++.+|...|++++|++.|+++++.+ |.+..+|..++.+|...|++++|+..|+++++..+
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P------------- 142 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP------------- 142 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------
Confidence 999999999999999999999999999987 77888999999999999999999999999998642
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
.+..+|..++.++...|++++|.+.++++++
T Consensus 143 --------~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 143 --------DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp --------CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred --------CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 4578899999999999999999999988875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=142.75 Aligned_cols=256 Identities=13% Similarity=0.063 Sum_probs=181.2
Q ss_pred cccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhC------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 046930 4 TSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNH------GTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDEN 77 (965)
Q Consensus 4 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (965)
.+.|.....+..++..+ ...|++++|+..|++++... ..+....++..++.++...|++++|+..|+++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQY-ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp TTSCHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34566677899999987 89999999999999988731 123346678899999999999999999999998752
Q ss_pred -----CCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 78 -----VKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISL------GALKPNVVSYTSLVIALCMLGRVNEVNELFVRM 146 (965)
Q Consensus 78 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 146 (965)
...|....++..++.+|...|++++|+..|+++++. +..+....++..++.++...|++++|+..|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112667889999999999999999999999999875 211233457889999999999999999999999
Q ss_pred HHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------HHH
Q 046930 147 ESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR-------LRPN-------LIT 212 (965)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~-------~~~ 212 (965)
++.... ......+....++..++.++...|++++|...|+++++.. ..+. ...
T Consensus 180 ~~~~~~-------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 180 LEIYQT-------------KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp HHHHHH-------------TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred HHHHHH-------------HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 863000 0000011235678889999999999999999999998631 1111 112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 213 YTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
+..+...+...+.+.++...+....... +.+..++..+..+|.+.|++++|..+|++..+.
T Consensus 247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 247 REECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2223334445566677777777766543 445667888899999999999999999988763
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-12 Score=148.44 Aligned_cols=167 Identities=15% Similarity=0.084 Sum_probs=125.3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.++.++..++.+|.+.|++++|++.|+++++.+ |.+..+++.++.+|.+.|++++|++.|+++++.+ |.+..+|.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~ 81 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 345677777777888888888888888887777 6777778888888888888888888888887766 56677777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
.++.++...|++++|++.|+++++..+ .+..+|+.++.+|.+.|++++|++.|+++++.
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P---------------------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINP---------------------AFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888888887776532 34677777777777778888888887777776
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 205 RLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
.+. +...+..++.++...|++++|.+.++++.+
T Consensus 141 ~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 141 KPD-FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CCC-ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 544 567777777777777777777777776654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-12 Score=124.35 Aligned_cols=209 Identities=11% Similarity=0.013 Sum_probs=166.6
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.++..|+..+..+ ...|++++|+..|..++...+ +++...+..++.++...|++++|+..|+++++.+ |.+..+
T Consensus 4 ~~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~ 78 (228)
T 4i17_A 4 TTDPNQLKNEGNDA-LNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN---YNLANA 78 (228)
T ss_dssp CCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CSHHHH
T ss_pred ccCHHHHHHHHHHH-HHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---cchHHH
Confidence 44557888888887 899999999999999998763 2677788889999999999999999999999998 889999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH-------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNV-------VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYS 159 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (965)
+..++.+|...|++++|+..|+++++.. |.+. ..|..++.++...|++++|+..|+++++..+
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------- 148 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-------- 148 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC--------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC--------
Confidence 9999999999999999999999999976 5666 5688999999999999999999999987531
Q ss_pred hHHhhhhhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 160 CWICGQMVDKGIKP--DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 160 ~~i~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
. +..+|..+..+|...| ...++++...+.. +...|.... ....+.+++|+..|++..
T Consensus 149 -------------~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 149 -------------KKWKTDALYSLGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred -------------CcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 2 3567888888876544 4445565554322 444454433 334567899999999999
Q ss_pred HcCCCCCHhHHHHHH
Q 046930 238 DLGLVADEFVYATLI 252 (965)
Q Consensus 238 ~~~~~~~~~~~~~l~ 252 (965)
+.. +.+..+...+.
T Consensus 208 ~l~-p~~~~~~~~l~ 221 (228)
T 4i17_A 208 TLS-PNRTEIKQMQD 221 (228)
T ss_dssp HHC-TTCHHHHHHHH
T ss_pred hcC-CCCHHHHHHHH
Confidence 886 44555554443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.9e-11 Score=127.01 Aligned_cols=202 Identities=11% Similarity=0.050 Sum_probs=155.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----Ccc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCC-
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKG-----ITV-NIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVP- 689 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~- 689 (965)
..++..++..|...|++++|+..++++.+.. ..+ ...+++.++.+|...|++++|++.|+++++. +..+
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5567788888899999999999988877531 111 2457888999999999999999999988763 2111
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CCC-h
Q 046930 690 SEVSYATLIYNLCKEGQLLDAKKLFDRMVLK----GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCL---EPD-K 761 (965)
Q Consensus 690 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~ 761 (965)
...++..+..+|...|++++|++.|++.++. +.+....++..++.++.+.|++++|...+++..+... .|. .
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1456788899999999999999999998871 2233467889999999999999999999999887421 222 2
Q ss_pred hHHHHHHHHHHhcCC---HHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 762 FTVSAVINGFCQKGD---MEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 762 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
..+..+...+...|+ +++|+..+++. +..|+... +..++..|...|++++|...|+++++.
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356667777778888 88888888873 34455444 778999999999999999999999873
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-11 Score=120.66 Aligned_cols=194 Identities=10% Similarity=-0.052 Sum_probs=155.0
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HhhHHH
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-EVSYAT 696 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 696 (965)
+.|+..+..++..+...|++++|+..|+++++...+++...+..++.++...|++++|+..|+++++.+ |+ ...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHH
Confidence 456788999999999999999999999999988654677888889999999999999999999999854 54 678889
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---hhHHHH
Q 046930 697 LIYNLCKEGQLLDAKKLFDRMVLKGFKPST-------RIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD---KFTVSA 766 (965)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ 766 (965)
+..+|...|++++|++.|+++++.. +.+. ..|..++.++...|++++|+..|+++++. .|+ ..+|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 9999999999999999999999852 3344 56888999999999999999999999984 776 357888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 767 VINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 767 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
++.+|...| ...++++...+ ..+...+.. ......|.+++|+..|+++++
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYAS--EKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 888886544 44556654432 122222332 234456789999999999998
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-11 Score=114.51 Aligned_cols=163 Identities=20% Similarity=0.232 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.+..++..+...|++++|+..|+.+++.+ |.+..++..++.++...|++++|+..|+++++.. |.+...+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~ 84 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD---AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC---ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 34445555555566666666665555554 4455555555666666666666666666655543 444555555555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 129 ALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
++...|++++|...++++.+.. +.+...+..++..+...|++++|...|+++.+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 142 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN---------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN- 142 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHhcCHHHHHHHHHHHHhcC---------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-
Confidence 5555566666665555555432 133445555555555555555555555555554322
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 209 NLITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 209 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
+..++..++.++...|++++|...++++.+
T Consensus 143 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-11 Score=116.18 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=149.6
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
....|..++..+ ...|++++|+..|+.++... +.+..++..++.++...|++++|...++.+++.+ |.+..++.
T Consensus 7 ~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 80 (186)
T 3as5_A 7 RQVYYRDKGISH-AKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHH-HHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred hhHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHH
Confidence 445677777776 78999999999999987654 4578889999999999999999999999999987 78899999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++..+...|++++|++.|++++... +.+...+..++.++...|++++|...++++.+..
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------ 140 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR------------------ 140 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------------------
Confidence 99999999999999999999999876 6788899999999999999999999999998753
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
+.+..++..++..+...|++++|...++++.+..
T Consensus 141 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 141 ---PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2467889999999999999999999999998753
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-11 Score=129.50 Aligned_cols=230 Identities=9% Similarity=-0.085 Sum_probs=178.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC----c-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-----CCC-CHh
Q 046930 624 YSTIVAALCREGYVNKALDLCAFAKNKGI----T-VNIVTYNTVIHSLCRQGCFVEAFRLFDSLERID-----MVP-SEV 692 (965)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~ 692 (965)
+...+..+...|++++|+..|+++.+... + ....++..++.+|...|++++|+..+.++++.. ..+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 45567778899999999999999886521 1 124578889999999999999999999987631 111 155
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCC-Ch
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVLK----GFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKI-----NCLEP-DK 761 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p-~~ 761 (965)
+++.+..+|...|++++|++.|+++++. +.++ ...++..++.+|...|++++|+..++++.+ . .| ..
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~ 261 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLP 261 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHH
Confidence 7888999999999999999999998863 2111 245788999999999999999999999887 3 33 35
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC---CCChH-HHHHHHHHHhcCCC---HHHHHHHHHHHHhcCcchhhhhc
Q 046930 762 FTVSAVINGFCQKGDMEGALGFFLDFNTKGV---SPDFL-GFLYLVKGLCTKGR---MEEARSILREMLQSKSVLELINR 834 (965)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~-~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~~~~~~~ 834 (965)
.++..++.+|...|++++|++.+++.++... .|... .+..+...+...|+ +++|+..+++...
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~---------- 331 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL---------- 331 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC----------
Confidence 6888999999999999999999999876321 23333 36667777778888 8888888876321
Q ss_pred ccccc-ccccHHHHHHHhhhcCcHHHHHHHHHHHh
Q 046930 835 VDIEV-ESESVLNFLISLCEQGSILEAIAILDEIG 868 (965)
Q Consensus 835 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 868 (965)
.| ....+..++..+...|++++|...|++..
T Consensus 332 ---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 332 ---HAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22 23345667778899999999999999864
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=124.12 Aligned_cols=180 Identities=8% Similarity=-0.085 Sum_probs=148.6
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
|.+...++.++..+ ...|++++|+..|+.++...+..+. ..++..++.++.+.|++++|+..|+++++..+..|..+.
T Consensus 12 ~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEF-YNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHH-HHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 56677888888887 7999999999999999987643222 678899999999999999999999999998755467788
Q ss_pred HHHHHHHHHHh--------cCChhhHHHHHHHHHHcCCCCCCHhhH-----------------HHHHHHHHhcCChhHHH
Q 046930 86 VCSSVVSGFCK--------IGKPELAIGFFENAISLGALKPNVVSY-----------------TSLVIALCMLGRVNEVN 140 (965)
Q Consensus 86 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~A~ 140 (965)
++..++.++.. .|++++|+..|++++... |.+.... ..++.+|...|++++|+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999 999999999999999876 4444444 67789999999999999
Q ss_pred HHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCC
Q 046930 141 ELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKE----------GTIEKAVGILNKMIEDRLR 207 (965)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 207 (965)
..|+++++..+.. ......+..++.+|... |++++|...|+++++..+.
T Consensus 169 ~~~~~~l~~~p~~------------------~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 169 VTYEAVFDAYPDT------------------PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHCTTS------------------TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCCC------------------chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 9999998864311 11356777888888766 8889999999999886433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=6e-10 Score=119.13 Aligned_cols=208 Identities=14% Similarity=-0.001 Sum_probs=147.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch----HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH----
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN----FVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV---- 120 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 120 (965)
.....+..+...|++++|...+++++...+ +.+. .++..++..+...|++++|+..+++++....-.++.
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344556667788999999999999888763 2222 267788889999999999999999988643112232
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046930 121 VSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIK--P-DTVSYTILLDGFSKEGTIEKAVGI 197 (965)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~ 197 (965)
.++..++.++...|++++|...++++++... ..+.. | ...++..+...+...|++++|...
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLIN----------------EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 157 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------------HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 2356788889999999999999999876311 11211 2 245667788889999999999999
Q ss_pred HHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHH----HHHHHHHhcCCHhHHHHH
Q 046930 198 LNKMIEDRLRP----NLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD--EFVYA----TLIDGVCRRGDLDCAFRL 267 (965)
Q Consensus 198 ~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g~~~~A~~~ 267 (965)
+++.+...... ...++..+..++...|++++|...+++.......++ ..... ..+..+...|++++|...
T Consensus 158 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99998753221 245677788889999999999999998875421211 11111 233446688999999988
Q ss_pred HHHHHHC
Q 046930 268 LEDMEKK 274 (965)
Q Consensus 268 ~~~~~~~ 274 (965)
+++....
T Consensus 238 ~~~a~~~ 244 (373)
T 1hz4_A 238 LRHTAKP 244 (373)
T ss_dssp HHHSCCC
T ss_pred HHhCCCC
Confidence 8887653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-10 Score=122.65 Aligned_cols=269 Identities=14% Similarity=0.066 Sum_probs=187.7
Q ss_pred HHHhcCCHHHHHHHHHhhhccCCCCchh----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cc----HHHHHHHHHH
Q 046930 595 KLLKAGSVLDVYKLVMGAEDSLPCMDVV----DYSTIVAALCREGYVNKALDLCAFAKNKGIT-VN----IVTYNTVIHS 665 (965)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~ 665 (965)
.+...|+.++|...+.......|..+.. +++.++..+...|++++|...+++....... .+ ..++..++..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4445555555555555554444444332 5677888899999999999999988764111 11 2346778889
Q ss_pred HHhcCcHHHHHHHHHHHHhC----CCC--CC-HhhHHHHHHHHHccCChHHHHHHHHHHHHCCC--CC--ChhhHHHHHH
Q 046930 666 LCRQGCFVEAFRLFDSLERI----DMV--PS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGF--KP--STRIYNSFID 734 (965)
Q Consensus 666 ~~~~~~~~~A~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~--~~~~~~~l~~ 734 (965)
+...|++++|+..++++++. +.. |. ...+..+..++...|++++|...+++.+...- .+ ...++..++.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999998763 221 22 45667788889999999999999999886411 11 2356788999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCC-hhHHH-----HHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---hHHHHHHHHH
Q 046930 735 GYCKFGQLEEAFKFLHDLKINCLEPD-KFTVS-----AVINGFCQKGDMEGALGFFLDFNTKGVSPD---FLGFLYLVKG 805 (965)
Q Consensus 735 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 805 (965)
++...|++++|...+++.....-.++ ...+. ..+..+...|++++|.+.+++..+....+. ...+..++..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 99999999999999999875311222 11222 233447799999999999999854321111 1236678899
Q ss_pred HhcCCCHHHHHHHHHHHHhcCcchhhhhcccccccc-ccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q 046930 806 LCTKGRMEEARSILREMLQSKSVLELINRVDIEVES-ESVLNFLISLCEQGSILEAIAILDEIGY 869 (965)
Q Consensus 806 ~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 869 (965)
+...|++++|...+++++..... .+..+.. .....++..+...|+.++|...+++...
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARS------LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHh------CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999874221 1111122 2455566678899999999999998654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-11 Score=123.52 Aligned_cols=206 Identities=11% Similarity=-0.019 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHccCChHHH
Q 046930 636 YVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVPS-EVSYATLIYNLCKEGQLLDA 710 (965)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 710 (965)
++++|...|+++ +..|...|++++|++.|.++++. +-.++ ..+++.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 478888887765 44577889999999999888763 31222 56788899999999999999
Q ss_pred HHHHHHHHHC----CCCC-ChhhHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCC-------hhHHHHHHHHHHhcCCH
Q 046930 711 KKLFDRMVLK----GFKP-STRIYNSFIDGYCKF-GQLEEAFKFLHDLKINCLEPD-------KFTVSAVINGFCQKGDM 777 (965)
Q Consensus 711 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~ 777 (965)
+..|++.++. |-.. -..+++.++.+|... |++++|+..|+++++. .|+ ..++..++..+...|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 9999988763 2111 145788999999996 9999999999998873 331 35688999999999999
Q ss_pred HHHHHHHHHhHhCCCCCCh------HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccccc---ccHHHHH
Q 046930 778 EGALGFFLDFNTKGVSPDF------LGFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVES---ESVLNFL 848 (965)
Q Consensus 778 ~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ 848 (965)
++|++.|+++++....... ..+..++.++...|++++|...|+++++..+. .++. ..+..++
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---------~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN---------FADSRESNFLKSLI 245 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------CCCcHHHHHHHHHH
Confidence 9999999999874322211 14677899999999999999999999984321 1111 1234455
Q ss_pred HHhh--hcCcHHHHHHHHHHH
Q 046930 849 ISLC--EQGSILEAIAILDEI 867 (965)
Q Consensus 849 ~~~~--~~g~~~~A~~~~~~~ 867 (965)
..+. ..+++++|+..|+++
T Consensus 246 ~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHcCCHHHHHHHHHHhccC
Confidence 5543 467899999998765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-11 Score=123.98 Aligned_cols=206 Identities=15% Similarity=0.077 Sum_probs=151.8
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-----
Q 046930 618 CMDVVDYSTIVAALCREGYVNKALDLCAFAKNK------GI-TVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----- 685 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 685 (965)
+....++..++..|...|++++|+..|+++.+. +. +....++..++.+|...|++++|++.|.++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 445778899999999999999999999998865 22 234568899999999999999999999998874
Q ss_pred -CCCCC-HhhHHHHHHHHHccCChHHHHHHHHHHHHC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 046930 686 -DMVPS-EVSYATLIYNLCKEGQLLDAKKLFDRMVLK------GFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKIN- 755 (965)
Q Consensus 686 -~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 755 (965)
...|+ ..++..+...|...|++++|+++++++++. +..| ...++..++.+|...|++++|+..++++.+.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11233 667888999999999999999999999874 1123 3567889999999999999999999998763
Q ss_pred ------CCCCC-hhHHHHHHHHHHhcCCH------HHHHHHHHHhHhCCCCCChH-HHHHHHHHHhcCCCHHHHHHHHHH
Q 046930 756 ------CLEPD-KFTVSAVINGFCQKGDM------EGALGFFLDFNTKGVSPDFL-GFLYLVKGLCTKGRMEEARSILRE 821 (965)
Q Consensus 756 ------~~~p~-~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~ 821 (965)
...+. ...|..+...+...+.. ..+...++.. ....|+.. .+..++.++...|++++|..+|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC--KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC--CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12333 33455555554443333 3333333332 12334443 388899999999999999999999
Q ss_pred HHhc
Q 046930 822 MLQS 825 (965)
Q Consensus 822 ~~~~ 825 (965)
+++.
T Consensus 278 al~~ 281 (283)
T 3edt_B 278 ASRN 281 (283)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 9873
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-11 Score=114.17 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=27.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
++.+|.+.|++++|+..|+++++.+ |.++.++..++.++...|++++|+..|+++++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555555554443 33444444444445555555555555554444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-09 Score=108.81 Aligned_cols=237 Identities=10% Similarity=-0.008 Sum_probs=195.1
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH----H
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQG--NMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF----C 95 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 95 (965)
......++|+..+..++... |....+++.-..++...| ++++++..++.++..+ |.+..+|+....++ .
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHH
Confidence 34444468999999999876 456677888888898888 9999999999999999 88999999999988 6
Q ss_pred hc---CChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh--HHHHHHHHHHHCCCccchhhhhhHHhhhhhhcC
Q 046930 96 KI---GKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN--EVNELFVRMESEGLKFDVVFYSCWICGQMVDKG 170 (965)
Q Consensus 96 ~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (965)
.. +++++++.+++++++.+ |.+..+|+....++.+.|.++ ++++.++++++.++
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~------------------- 177 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL------------------- 177 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-------------------
T ss_pred hccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-------------------
Confidence 66 78999999999999987 889999999999999999998 99999999998753
Q ss_pred CCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcC--C
Q 046930 171 IKPDTVSYTILLDGFSKEGT------IEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEE-AFTVFKKVEDLG--L 241 (965)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~ 241 (965)
.|..+|+....+....++ ++++++.+++++...+. |..+|+-+...+.+.|+... +..+..++.+.+ .
T Consensus 178 --~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 178 --KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp --TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred --CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 678889888877777776 99999999999998766 89999999888888887544 555666665432 1
Q ss_pred CCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 242 VADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTII 287 (965)
Q Consensus 242 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 287 (965)
+.+...+..+...|.+.|+.++|.++++.+.+.--+.....|+..+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 3467788889999999999999999999998631122444555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-11 Score=115.16 Aligned_cols=175 Identities=11% Similarity=0.050 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHH----------------HHHHHHhcCChhHHHHHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCS----------------LVYSFCSQGNMSRAVEVLELMS 74 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~ 74 (965)
..+...+..+ ...|++++|+..|+.++... |.++..+.. ++.++.+.|++++|+..|++++
T Consensus 5 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAA-IEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455556665 78999999999999999876 345666777 9999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCc
Q 046930 75 DENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR--VNEVNELFVRMESEGLK 152 (965)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~ 152 (965)
+.+ |.++.++..++.++...|++++|+..|+++++.+ |.++.++..++.+|...|+ ...+...+.++...
T Consensus 82 ~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--- 153 (208)
T 3urz_A 82 QKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--- 153 (208)
T ss_dssp HHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC---
T ss_pred HHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC---
Confidence 999 8899999999999999999999999999999987 7788899999998876654 44556666665421
Q ss_pred cchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 153 FDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAII 217 (965)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 217 (965)
.|....+..+..++...|++++|...|+++++. .|+......+.
T Consensus 154 -------------------~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 154 -------------------TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred -------------------CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 233334555666777789999999999999875 55655444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=125.50 Aligned_cols=239 Identities=13% Similarity=0.048 Sum_probs=168.6
Q ss_pred HccCCchHHHHHHHHHHHhC------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCCCchHHHHHH
Q 046930 22 IKRNDPEKALLVLKDCLRNH------GTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDEN-----VKYPFDNFVCSSV 90 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l 90 (965)
...|+++.|+..|++++... ..+....++..++.++...|++++|+..|+.+++.. ...|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 46788999999998888732 112346678899999999999999999999998762 2226778899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhh
Q 046930 91 VSGFCKIGKPELAIGFFENAISL------GALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICG 164 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (965)
+.+|...|++++|+..|++++.. ...+....++..++.++...|++++|+..|+++++...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------- 158 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA------------- 158 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------
Confidence 99999999999999999999875 10133456888999999999999999999999986400
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCChHH------HH
Q 046930 165 QMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED-------RLRPN-LITYTAIIFGFCKKGKLEE------AF 230 (965)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~------A~ 230 (965)
.......+....++..+..++...|++++|...|+++++. ...+. ...+..+.......+.... +.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 0000001123667889999999999999999999999864 11222 2233333333333333222 22
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 231 TVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
..++.... ..+....++..+...|...|++++|..+|++.++.
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 239 SWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ----CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22222111 11233557888899999999999999999998753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.5e-12 Score=112.58 Aligned_cols=146 Identities=10% Similarity=-0.005 Sum_probs=122.0
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC 95 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (965)
|+..+ ..+|+++.|+..|..++... +..+..+..++.+|.+.|++++|++.|+++++.+ |.++.+|..++.+|.
T Consensus 3 LG~~~-~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 3 LGSMR-RSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYE 76 (150)
T ss_dssp ----C-CCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred hHHHH-HHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 34444 67899999999999977532 3345667889999999999999999999999999 899999999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHH-HHHHHHCCCccchhhhhhHHhhhhhhcCCCCC
Q 046930 96 KIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNEL-FVRMESEGLKFDVVFYSCWICGQMVDKGIKPD 174 (965)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 174 (965)
..|++++|+..|+++++.+ |.++.++..++.+|.+.|++++|.+. ++++++..| .+
T Consensus 77 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P---------------------~~ 133 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP---------------------GS 133 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST---------------------TC
T ss_pred HcCchHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc---------------------CC
Confidence 9999999999999999987 77888999999999999999887765 588887642 45
Q ss_pred HHHHHHHHHHHHhcCC
Q 046930 175 TVSYTILLDGFSKEGT 190 (965)
Q Consensus 175 ~~~~~~l~~~~~~~g~ 190 (965)
+.+|......+...|+
T Consensus 134 ~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 7778877777777664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=117.26 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=92.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC-Hhh
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN-VVS 122 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 122 (965)
+.++..+..++..+.+.|++++|+..|+.+++..+..+....++..++.+|.+.|++++|+..|+++++..+-.+. ..+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4567888899999999999999999999999998432333899999999999999999999999999997522223 457
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHHCCC
Q 046930 123 YTSLVIALCM--------LGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 123 ~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~ 151 (965)
+..++.++.. .|++++|+..|+++++..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 8889999999 9999999999999998643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-11 Score=139.50 Aligned_cols=170 Identities=13% Similarity=0.035 Sum_probs=94.7
Q ss_pred ccCCchHHHHHHHHHH--------HhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 046930 23 KRNDPEKALLVLKDCL--------RNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGF 94 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (965)
..|++++|+..|+.++ ... +.+...+..++.++...|++++|+..|+++++.+ |.+..+|+.++.++
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHH
Confidence 4566666666666655 322 3344555555566666666666666666666655 55556666666666
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC
Q 046930 95 CKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD 174 (965)
Q Consensus 95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 174 (965)
...|++++|+..|+++++.+ |.+...+..++.++.+.|++++ +..|+++++.++ .+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P---------------------~~ 533 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND---------------------GV 533 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT---------------------TC
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC---------------------ch
Confidence 66666666666666666554 4455555566666666666666 666666555421 33
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046930 175 TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK 222 (965)
Q Consensus 175 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 222 (965)
..+|..+..++.+.|++++|++.|+++++.++. +..++..+..++..
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHc
Confidence 455555666666666666666666655544322 34444444444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=111.97 Aligned_cols=146 Identities=8% Similarity=-0.020 Sum_probs=119.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
|+.++...|++++|+..++.+...+ |.++..+..++.+|...|++++|++.|+++++.+ |.++.+|..++.++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 4556677889999999999988877 7788888999999999999999999999999987 7788899999999999
Q ss_pred cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHH
Q 046930 133 LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGI-LNKMIEDRLRPNLI 211 (965)
Q Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~ 211 (965)
.|++++|+..|+++++.++ .++.+|..+..+|.+.|++++|.+. ++++++..+. ++.
T Consensus 78 ~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~ 135 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNP---------------------TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPA 135 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHH
T ss_pred cCchHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHH
Confidence 9999999999999988642 4578888899999999998776655 5888887554 777
Q ss_pred HHHHHHHHHHhcCC
Q 046930 212 TYTAIIFGFCKKGK 225 (965)
Q Consensus 212 ~~~~l~~~~~~~g~ 225 (965)
+|......+...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 88877777777664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-10 Score=118.18 Aligned_cols=200 Identities=13% Similarity=-0.043 Sum_probs=151.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC---CCC--Hh
Q 046930 623 DYSTIVAALCREGYVNKALDLCAFAKNK----GITVN-IVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM---VPS--EV 692 (965)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~ 692 (965)
.|...+..|...|++++|+..|.++.+. |.++. ..+|+.++.+|...|++++|+..|+++++... .+. ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445567788999999999999988764 22222 46899999999999999999999999887321 111 45
Q ss_pred hHHHHHHHHHcc-CChHHHHHHHHHHHHCC--C-CC-C-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCh-----
Q 046930 693 SYATLIYNLCKE-GQLLDAKKLFDRMVLKG--F-KP-S-TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDK----- 761 (965)
Q Consensus 693 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~--~-~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----- 761 (965)
++..+..+|... |++++|++.|+++++.. . .+ . ..++..++.++...|++++|+..|+++.+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 788899999996 99999999999998741 0 01 1 356889999999999999999999999985322211
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH------HHHHHHHHh--cCCCHHHHHHHHHHHHh
Q 046930 762 -FTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG------FLYLVKGLC--TKGRMEEARSILREMLQ 824 (965)
Q Consensus 762 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~------~~~l~~~~~--~~g~~~eA~~~~~~~~~ 824 (965)
.+|..++.++...|++++|+..|++.++ +.|+... +..++..+. ..+++++|+..|++++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 1577888899999999999999999954 6665432 344566664 56889999999988866
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-10 Score=111.16 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=81.9
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
+...++.++..+ ...|++++|+..|+.++...+..+. ..++..++.++.+.|++++|+..|+++++.++..+..+.++
T Consensus 3 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQK-LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 345677777776 7889999999999999887654332 45788889999999999999999999999885333334578
Q ss_pred HHHHHHHHh------------------cCChhhHHHHHHHHHHcC
Q 046930 88 SSVVSGFCK------------------IGKPELAIGFFENAISLG 114 (965)
Q Consensus 88 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~ 114 (965)
..++.++.. .|++++|+..|+++++..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 888888775 568888888888888765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.22 E-value=7e-10 Score=108.39 Aligned_cols=191 Identities=9% Similarity=0.008 Sum_probs=131.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH-hhHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV-VSYT 124 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ 124 (965)
++..+..++..+...|++++|+..|+.+++..+..+....++..++.+|.+.|++++|+..|+++++..+-.+.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 455677788889999999999999999999875434456799999999999999999999999999876222222 2666
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHH
Q 046930 125 SLVIALCM------------------LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFS 186 (965)
Q Consensus 125 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 186 (965)
.++.++.. .|++++|+..|+++++..|. +..++..+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~---------------------~~~a~~a~~~l-- 139 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN---------------------SQYTTDATKRL-- 139 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT---------------------CTTHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC---------------------ChhHHHHHHHH--
Confidence 77777665 57899999999999986431 12222111110
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHhHH
Q 046930 187 KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD--EFVYATLIDGVCRRGDLDCA 264 (965)
Q Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 264 (965)
..+...+ ......+...+.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|
T Consensus 140 --------~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 140 --------VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp --------HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 0000011 01123455667777888888888888777642211 24566677777788888888
Q ss_pred HHHHHHHHHCC
Q 046930 265 FRLLEDMEKKG 275 (965)
Q Consensus 265 ~~~~~~~~~~g 275 (965)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 88887777653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=108.01 Aligned_cols=169 Identities=14% Similarity=0.076 Sum_probs=135.8
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.....+..++..+ ...|++++|+..|++++... |.+...+..++.++...|++++|+..|+.++..+ | ++..
T Consensus 3 ~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p-~~~~ 75 (176)
T 2r5s_A 3 ASPDEQLLKQVSEL-LQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---Q-DNSY 75 (176)
T ss_dssp ---CTTHHHHHHHH-HHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---C-CHHH
T ss_pred CCHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---C-ChHH
Confidence 34445677777776 79999999999999988866 5678889999999999999999999999998887 6 6655
Q ss_pred HHHHHHHH-HhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 87 CSSVVSGF-CKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 87 ~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
+...+... ...+...+|+..|+++++.+ |.+...+..++.++...|++++|+..|+++++..+.
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------- 140 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLG------------- 140 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-------------
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-------------
Confidence 55444332 23345567899999999876 677889999999999999999999999999886431
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 166 MVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
..+...+..++.++...|+.++|...|++.+.
T Consensus 141 ------~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 141 ------AQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ------TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ------cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 12356788899999999999999999988764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.8e-11 Score=134.85 Aligned_cols=174 Identities=7% Similarity=-0.072 Sum_probs=121.3
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 58 CSQGNMSRAVEVLELMS--------DENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
...|++++|++.|++++ +.+ |.+..++..++.++...|++++|++.|+++++.+ |.+..+|..++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF---SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc---ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHH
Confidence 56677777777777777 555 6677777777777777777777877777777765 5667777777777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN 209 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (965)
+...|++++|+..|+++++..+ .+...|..+..++.+.|++++ ++.|+++++.++. +
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P---------------------~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~ 533 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFP---------------------GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-V 533 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHST---------------------TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-C
T ss_pred HHHcCCHHHHHHHHHHHHHhCC---------------------CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-h
Confidence 7777777777777777776532 346667777777777777777 7777777776544 6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 046930 210 LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGD 260 (965)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 260 (965)
..+|..+..++.+.|++++|+..|+++.+.+ +.+...+..+..++...++
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 6677777777777777777777777777654 3345566666666544443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-10 Score=107.81 Aligned_cols=164 Identities=12% Similarity=0.023 Sum_probs=124.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
.....++..+...|++++|+..|+++++.+ |.++.++..++.++...|++++|+..|++++... | ++..+....
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~ 80 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIA 80 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHH
Confidence 345667778888999999999999998888 7888999999999999999999999999988765 3 554443333
Q ss_pred HH-HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 128 IA-LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 128 ~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
.. +...+...+|+..++++++..| .+...+..+..++...|++++|...|+++++..+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANP---------------------DNFELACELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHhhcccchHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 22 2233344457888888877532 3577888888888888888888888888888755
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 207 RP-NLITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 207 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
.+ +...+..++.++...|+.++|...|++...
T Consensus 140 ~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 140 GAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 43 356777888888888888888888887654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-09 Score=105.84 Aligned_cols=242 Identities=10% Similarity=0.013 Sum_probs=167.0
Q ss_pred HHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHH
Q 046930 561 VQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKA 640 (965)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 640 (965)
...+-.|++..++.-..++...++ .....-..+.++..|+.... ..+.+...++..+.. |...+ |
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a 85 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----N 85 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----C
T ss_pred HHHHHhhHHHHHHHHHHhcCccch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----H
Confidence 345566778877775444433222 12223445677777776531 122233334344333 33322 7
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 046930 641 LDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMV-PSEVSYATLIYNLCKEGQLLDAKKLFDRMVL 719 (965)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (965)
+..|++..+.+ +++..++..++.++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888887765 446666778899999999999999999998876531 2467778888999999999999999999987
Q ss_pred CCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 046930 720 KGFKP-----STRIYNSFIDG--YCKFG--QLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNTK 790 (965)
Q Consensus 720 ~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (965)
. .| +..+...|+.+ ....| ++.+|..+|+++... .|+..+-..+..++.+.|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 56 35555666555 44445 899999999999874 566333334444888999999999999977542
Q ss_pred -----CC---CCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 791 -----GV---SPDFLG-FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 791 -----~~---~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
+. .|+... +.+++......|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 11 366555 6578877777887 89999999998
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.8e-10 Score=113.42 Aligned_cols=165 Identities=10% Similarity=-0.015 Sum_probs=89.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh-hH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV-SY 123 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~ 123 (965)
.+...+..++..+...|++++|+..|+++++.+ |.++.++..++.++...|++++|+..|+++.... |+.. ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~ 188 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQG 188 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHH
Confidence 334445555555566666666666666666655 5555666666666666666666666666655543 2322 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
......+...++.++|+..+++++...| .+...+..+...+...|++++|...|.++++
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P---------------------~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENP---------------------EDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCC---------------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2233334455555556666666555421 3455555566666666666666666665554
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 204 --DRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 204 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
.+.. +...+..++.++...|+.++|...|++..
T Consensus 248 ~~p~~~-~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 248 XDLTAA-DGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTGG-GGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccccc-cchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3211 34455555666666666666666555543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-09 Score=104.58 Aligned_cols=231 Identities=12% Similarity=0.039 Sum_probs=168.5
Q ss_pred HHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 52 SLVYSFCSQGNM-SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG--KPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 52 ~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
..+++..+.|.+ ++|+..++.++..+ |.+..+|+..+.++...| ++++++++++.++..+ |.+..+|+....
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~ 111 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHH
Confidence 334444455555 69999999999999 899999999999999999 9999999999999987 777888987777
Q ss_pred HH----Hhc---CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHH
Q 046930 129 AL----CML---GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIE--KAVGILN 199 (965)
Q Consensus 129 ~~----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~ 199 (965)
++ ... +++++++.+++++++.+ +.+..+|+.-.-++.+.|.++ ++++.++
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~---------------------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSD---------------------PKNHHVWSYRKWLVDTFDLHNDAKELSFVD 170 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 77 556 78899999999998864 367888888888888888888 8999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhH-HHHHHHHHH
Q 046930 200 KMIEDRLRPNLITYTAIIFGFCKKGK------LEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDC-AFRLLEDME 272 (965)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 272 (965)
++++.++. |..+|+-...++...++ ++++++.++.++... +.|...|+.+...+.+.|+... +.....++.
T Consensus 171 ~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 171 KVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 99988766 88888877766666665 677777777777665 5566677666666666665332 333444433
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 046930 273 KKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEE 338 (965)
Q Consensus 273 ~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 338 (965)
+.+ ..-+.+..++..++..+.+.|+.++|+++++.+.+
T Consensus 249 ~~~----------------------------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 249 DLE----------------------------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EGG----------------------------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcc----------------------------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 321 00023444455555555566666677777777665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.3e-10 Score=97.50 Aligned_cols=114 Identities=9% Similarity=0.038 Sum_probs=91.9
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.....+...+..| .+.|++++|+..|.++++.. |.++.++..++.+|.+.|++++|+..|+++++.+ |.++.+
T Consensus 10 P~~a~~~~~~G~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~a 83 (126)
T 4gco_A 10 PELAQEEKNKGNEY-FKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---SKFIKG 83 (126)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred HHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---hhhhHH
Confidence 56667788888877 78888888888888888766 4567788888888888888888888888888887 778888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
|..++.++...|++++|++.|+++++.+ |.+..++..+..
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~~ 123 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVD--PSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHHH
Confidence 8888888888888888888888888876 666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-09 Score=95.28 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=37.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
++..+...|++++|...|+.+++.+ |.+..++..++..+...|++++|+..|++++... +.+...+..++.++..
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHH
Confidence 3333444444444444444444333 3333444444444444444444444444444332 2333334444444444
Q ss_pred cCChhHHHHHHHHHH
Q 046930 133 LGRVNEVNELFVRME 147 (965)
Q Consensus 133 ~~~~~~A~~~~~~~~ 147 (965)
.|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 82 QGDYDEAIEYYQKAL 96 (136)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-09 Score=95.74 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..|+.++..+ ...|++++|+..|+.++... +.+...+..++..+...|++++|...|+++...+ |.+..++..+
T Consensus 2 ~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l 75 (136)
T 2fo7_A 2 EAWYNLGNAY-YKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHH-HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHH-HHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHH
Confidence 3577788877 78899999999999998865 4567788899999999999999999999999987 7788899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
+.++...|++++|+..|++++... +.+...+..++.++...|++++|...++++....
T Consensus 76 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 999999999999999999999876 6678889999999999999999999999998753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-09 Score=101.70 Aligned_cols=175 Identities=10% Similarity=-0.056 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC----ChhhH
Q 046930 28 EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG----KPELA 103 (965)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A 103 (965)
.+|++.|+++... .++.++..++..|...+++++|+..|+++.+.+ ++.++..++.+|.. + ++++|
T Consensus 3 ~eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp -CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred chHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 3467788887763 467788888888888899999999999888765 46788888888887 6 88899
Q ss_pred HHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC---HH
Q 046930 104 IGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD---TV 176 (965)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~ 176 (965)
+.+|+++.+ +.++.++..++.+|.. .+++++|+.+|+++.+.+ ++ +.
T Consensus 73 ~~~~~~A~~----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----------------------~~~~~~~ 126 (212)
T 3rjv_A 73 RQLAEKAVE----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS----------------------ESDAAVD 126 (212)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST----------------------TSHHHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC----------------------CCcchHH
Confidence 999998876 4577788888888877 788889999888887653 32 67
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcC
Q 046930 177 SYTILLDGFSK----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKK-G-----KLEEAFTVFKKVEDLG 240 (965)
Q Consensus 177 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 240 (965)
++..|...|.. .+++++|...|++..+. .++..++..|..+|... | ++++|...|+...+.|
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 78888888887 77888888888888876 22445667777777653 2 7888888888888776
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.8e-10 Score=112.07 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=142.6
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhh
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSC 160 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (965)
|.+...+..++..+...|++++|+..|++++..+ |.+..++..++.++...|++++|...++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----------- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----------- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----------
Confidence 7788899999999999999999999999999987 778889999999999999999999999998765
Q ss_pred HHhhhhhhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 161 WICGQMVDKGIKPDTVSYTI-LLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
.|+...... ....+.+.++.++|...|++++...+. +...+..+..++...|++++|+..|.++.+.
T Consensus 181 -----------~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 181 -----------DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp -----------GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 245443333 333466788889999999999987654 7889999999999999999999999999988
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 046930 240 GLVA-DEFVYATLIDGVCRRGDLDCAFRLLEDMEK 273 (965)
Q Consensus 240 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 273 (965)
.... +...+..++..+...|+.++|...+++.+.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 5322 266889999999999999999999888764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.7e-09 Score=100.01 Aligned_cols=174 Identities=11% Similarity=-0.021 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC----ChHHHHHH
Q 046930 638 NKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEG----QLLDAKKL 713 (965)
Q Consensus 638 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 713 (965)
.+|+..|++..+.| +..++..|+..|...+++++|+..|++..+.| ++..+..|...|.. + ++++|+++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677888887764 77888889999999999999999999998865 56677778877877 6 89999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCC---hhHHHHHHHHHHh----cCCHHHHHH
Q 046930 714 FDRMVLKGFKPSTRIYNSFIDGYCK----FGQLEEAFKFLHDLKINCLEPD---KFTVSAVINGFCQ----KGDMEGALG 782 (965)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~ 782 (965)
|++..+.| ++..+..|+.+|.. .+++++|+.+|++..+. .|. ..++..|...|.. .+++++|++
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99998765 67788899999987 88999999999999885 342 6788889999987 789999999
Q ss_pred HHHHhHhCCCCCChHHHHHHHHHHhcC-C-----CHHHHHHHHHHHHhc
Q 046930 783 FFLDFNTKGVSPDFLGFLYLVKGLCTK-G-----RMEEARSILREMLQS 825 (965)
Q Consensus 783 ~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~eA~~~~~~~~~~ 825 (965)
+|++..+. .++...+..|+.+|... | ++++|..+|+++.+.
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 99999774 33445677899888753 4 899999999999874
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-08 Score=99.12 Aligned_cols=246 Identities=10% Similarity=-0.019 Sum_probs=188.4
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQG-NMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
++..+.... ...+..++|+..+..++... |.+..+++.-..++...| .+++++..++.++..+ |.+..+|+..
T Consensus 56 ~~~~~r~~~-~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n---PKny~aW~hR 129 (349)
T 3q7a_A 56 AMDYFRAIA-AKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN---LKSYQVWHHR 129 (349)
T ss_dssp HHHHHHHHH-HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---CCCHHHHHHH
T ss_pred HHHHHHHHH-HhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CCcHHHHHHH
Confidence 344433333 55666678999999999877 456677888888888888 5999999999999999 8999999999
Q ss_pred HHHHHhc-C-ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCccchhhhhh
Q 046930 91 VSGFCKI-G-KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN--------EVNELFVRMESEGLKFDVVFYSC 160 (965)
Q Consensus 91 ~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~ 160 (965)
..++... + ++++++++++++++.+ +.|..+|+....++.+.|.++ ++++.++++++.++
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp--------- 198 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG--------- 198 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC---------
Confidence 9999988 8 9999999999999887 788999998888888888777 99999999998653
Q ss_pred HHhhhhhhcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-------
Q 046930 161 WICGQMVDKGIKPDTVSYTILLDGFSKEGT-------IEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKL------- 226 (965)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------- 226 (965)
.|..+|+....++.+.++ ++++++.+++++...+. |...|+-+-..+.+.|+.
T Consensus 199 ------------~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~ 265 (349)
T 3q7a_A 199 ------------RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPA 265 (349)
T ss_dssp ------------TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred ------------CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccc
Confidence 678899988888888776 78999999999988666 888998877777776654
Q ss_pred -------------HHHHHHHHHHHHcC-----CCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046930 227 -------------EEAFTVFKKVEDLG-----LVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTII 287 (965)
Q Consensus 227 -------------~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 287 (965)
.........+.... ..++...+..++..|...|+.++|.++++.+.+.--+.....|+-.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 266 ILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp HGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 22333333332221 13567778888899999999999999999987542222334444433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-09 Score=123.25 Aligned_cols=153 Identities=11% Similarity=0.017 Sum_probs=83.9
Q ss_pred CCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHH
Q 046930 25 NDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAI 104 (965)
Q Consensus 25 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 104 (965)
|++++|+..|+++++.. +.+...+..++.++...|++++|++.|+++++.+ |.+..++..++.+|...|++++|+
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55666666666665543 3345566666666666666666666666666665 556666666666666666666666
Q ss_pred HHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHH
Q 046930 105 GFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDG 184 (965)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 184 (965)
+.|+++++.. |.+...+..++.++...|++++|.+.|+++.+.. +.+..++..+..+
T Consensus 78 ~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~ 134 (568)
T 2vsy_A 78 VLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---------------------PEEPYITAQLLNW 134 (568)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHH
Confidence 6666666654 4555566666666666666666666666665542 1235555556666
Q ss_pred HHhc---CCHHHHHHHHHHHHHCC
Q 046930 185 FSKE---GTIEKAVGILNKMIEDR 205 (965)
Q Consensus 185 ~~~~---g~~~~A~~~~~~~~~~~ 205 (965)
+... |++++|.+.|+++++.+
T Consensus 135 ~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 135 RRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhhccccHHHHHHHHHHHHhcC
Confidence 6666 66666666666666543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-09 Score=93.74 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=57.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
..+...+..|.+.|++++|++.|+++++.+ |.++.+|..++.+|.+.|++++|+..|+++++.+ |.+..+|..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHH
Confidence 345555555666666666666666666555 5555666666666666666666666666666554 44555555666
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 046930 128 IALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
.++...|++++|+..|+++++.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666665554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-07 Score=93.92 Aligned_cols=188 Identities=10% Similarity=0.032 Sum_probs=137.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-----CHhh
Q 046930 620 DVVDYSTIVAALCREGYVNKALDLCAFAKNKGI-TVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVP-----SEVS 693 (965)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~ 693 (965)
+..++..++.++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 455567889999999999999999999987754 236677888899999999999999999999884 46 3455
Q ss_pred HHHHHHH--HHc--cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC---CC-C
Q 046930 694 YATLIYN--LCK--EGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKIN-----CL---EP-D 760 (965)
Q Consensus 694 ~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~p-~ 760 (965)
...|+.+ ... .+++.+|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.+. +. .| |
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 5566555 333 34999999999999875 455223333444899999999999999977652 00 25 4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 761 KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
..++.+++......|+ +|.++++++++ ..|+..... ++.+....|+++..+
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~----------d~~~k~~~Fd~~~~k 305 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIK----------HHQEIDAKFDELVRK 305 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHH----------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHH----------HHHHHHHHHHHHHHH
Confidence 6677667666667786 89999999976 788876533 234444556655543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-09 Score=111.74 Aligned_cols=204 Identities=8% Similarity=-0.007 Sum_probs=140.8
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHccCChH
Q 046930 634 EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMVPS-EVSYATLIYNLCKEGQLL 708 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~ 708 (965)
.+++++|...|.++ +..|...|++++|+..|.++.+. +-.+. ..++..+..+|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 36677777776654 45667788888888888877653 11111 456778888888899999
Q ss_pred HHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-------hhHHHHHHHHHHhcCC
Q 046930 709 DAKKLFDRMVLK----GFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-------KFTVSAVINGFCQKGD 776 (965)
Q Consensus 709 ~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~ 776 (965)
+|++.|++.++. |-.. ...++..++.+|.. |++++|+..|+++++. .|+ ..++..++.+|...|+
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~ 170 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV--FENEERLRQAAELIGKASRLLVRQQK 170 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH--HHhCCChhHHHHHHHHHHHHHHHcCC
Confidence 999999887753 2111 14577888999988 9999999999998763 221 3578889999999999
Q ss_pred HHHHHHHHHHhHhC----CCCCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHh
Q 046930 777 MEGALGFFLDFNTK----GVSPDFL-GFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISL 851 (965)
Q Consensus 777 ~~~A~~~~~~~~~~----~~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 851 (965)
+++|++.|+++++. +..+... .+..++.++...|++++|...|++++ ..+... .......+..++..+
T Consensus 171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~------~~~e~~~l~~l~~~~ 243 (307)
T 2ifu_A 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS------GSEDCAALEDLLQAY 243 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC------CCHHHHHHHHHHHHH
Confidence 99999999998762 2112222 46678888888999999999999998 543110 000111233444444
Q ss_pred hhcCcHHHHHHH
Q 046930 852 CEQGSILEAIAI 863 (965)
Q Consensus 852 ~~~g~~~~A~~~ 863 (965)
..|+.+++.++
T Consensus 244 -~~~d~~~~~~~ 254 (307)
T 2ifu_A 244 -DEQDEEQLLRV 254 (307)
T ss_dssp -HTTCHHHHHHH
T ss_pred -HhcCHHHHHHH
Confidence 56777666663
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-09 Score=121.03 Aligned_cols=154 Identities=10% Similarity=0.004 Sum_probs=120.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 046930 60 QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEV 139 (965)
Q Consensus 60 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 139 (965)
.|++++|+..|+++++.+ |.+..++..++.++...|++++|++.|+++++.+ |.+..++..++.++...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 478899999999999988 7889999999999999999999999999999876 67788999999999999999999
Q ss_pred HHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046930 140 NELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFG 219 (965)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (965)
...|+++++.. +.+...+..+..++.+.|++++|.+.|+++++..+. +...+..+..+
T Consensus 77 ~~~~~~al~~~---------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 134 (568)
T 2vsy_A 77 AVLLQQASDAA---------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNW 134 (568)
T ss_dssp HHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 99999998764 245788899999999999999999999999987544 67888889999
Q ss_pred HHhc---CChHHHHHHHHHHHHcC
Q 046930 220 FCKK---GKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 220 ~~~~---g~~~~A~~~~~~~~~~~ 240 (965)
+... |++++|.+.++++.+.+
T Consensus 135 ~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 135 RRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhhccccHHHHHHHHHHHHhcC
Confidence 9999 99999999999998876
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=96.96 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=93.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.+...+..++..+.+.|++++|+..|+++++.+ |.++.+|..++.+|...|++++|+..|++++..+ |.++..|.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~ 108 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHH
Confidence 356678899999999999999999999999999 8999999999999999999999999999999987 77888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.++.+|...|++++|+..|+++++..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999863
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-07 Score=100.93 Aligned_cols=391 Identities=9% Similarity=-0.040 Sum_probs=220.2
Q ss_pred cC-CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC-hh
Q 046930 24 RN-DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK-PE 101 (965)
Q Consensus 24 ~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~ 101 (965)
.| +...|..+|+.++...|. |+++.+..+|++.+... | +...|...+....+.+. .+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~~---p-s~~LW~~Y~~f~~~~~~~~~ 65 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKKS---Y-NLDLWMLYIEYVRKVSQKKF 65 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTTC---C-CHHHHHHHHHHHHHHC----
T ss_pred cCcchHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhccC---C-CHHHHHHHHHHHHHhCchHH
Confidence 45 377788888887765432 78889999999988854 4 77888888887777663 46
Q ss_pred hHHHHHHHHHHcCCC-CCCHhhHHHHHHHHH----hcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHH
Q 046930 102 LAIGFFENAISLGAL-KPNVVSYTSLVIALC----MLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTV 176 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 176 (965)
.....|+.++..-|. +.+...|...+..+. ..++.+.+..+|++++..++..-...|.....-+.. .+..
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-----~~~~ 140 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-----LNKI 140 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-----HCHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-----hccc
Confidence 677888888865322 446677777776543 245678888899998874221111111111110110 1122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHHcCCCCCHhHHH
Q 046930 177 SYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKG--K-----LEEAFTVFKKVEDLGLVADEFVYA 249 (965)
Q Consensus 177 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~ 249 (965)
+...++.-. .+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++.... +.+...|.
T Consensus 141 ~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~ 217 (493)
T 2uy1_A 141 TGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYF 217 (493)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHH
T ss_pred cHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 222222221 2345555666655543211113445655554422211 1 345678899988764 55678888
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHH
Q 046930 250 TLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGI 329 (965)
Q Consensus 250 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 329 (965)
..+..+.+.|+++.|..+|++.... +.+...+.. |....+.++. +..+...+.........
T Consensus 218 ~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~-------------~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 218 FYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV-------------YGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH-------------HHHHHHHTC--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH-------------HHHHHHHHHhhccchhh
Confidence 8888888899999999999999987 323333322 2211111111 11111111000000000
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 046930 330 LETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLG-RIEEALEIFDELRR 408 (965)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~ 408 (965)
. .. .......|...+....+.+..+.|..+|+.+ +.. ..+..+|...+..-...+ +.+.|..+|+...+
T Consensus 279 ------~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 279 ------K-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred ------h-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0 00 0011245666666666677788888888887 321 223444443333333333 68888888888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHh
Q 046930 409 MSISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIEN 477 (965)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 477 (965)
..|.++..|...+......|+.+.|..+|+++. .....+...+..=...|+.+.+..++++...
T Consensus 349 ~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 776677777777777778888888888888862 2344444444444555888878777776553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.98 E-value=7.3e-09 Score=92.39 Aligned_cols=102 Identities=12% Similarity=-0.003 Sum_probs=95.5
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...++.++..+ .+.|++++|+..|++++... |.++..+..++.+|...|++++|+..|+++++.+ |.++.+
T Consensus 33 p~~~~~~~~lg~~~-~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~ 106 (151)
T 3gyz_A 33 DDMMDDIYSYAYDF-YNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHH
T ss_pred HHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHH
Confidence 67777899999987 89999999999999999977 5688899999999999999999999999999999 889999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
|..++.+|...|++++|+..|+++++..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999965
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-08 Score=97.10 Aligned_cols=130 Identities=12% Similarity=-0.030 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..++.++..+ ...|++++|+..|++++ ++++.++..++.++...|++++|+..|+.+++.+ |.+..++..+
T Consensus 7 ~~~~~~g~~~-~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~l 77 (213)
T 1hh8_A 7 ISLWNEGVLA-ADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHH
Confidence 3566777776 78999999999999864 4578899999999999999999999999999998 7889999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCH----------------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNV----------------VSYTSLVIALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
+.+|...|++++|++.|+++++.. +.+. ..+..++.++...|++++|...|+++++..+
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999999999865 3333 7889999999999999999999999998643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.1e-09 Score=102.13 Aligned_cols=190 Identities=7% Similarity=-0.069 Sum_probs=88.1
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHH-------HHHHHhcCChhHHHHHHHHHHhcCCCC--------C-------
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSL-------VYSFCSQGNMSRAVEVLELMSDENVKY--------P------- 81 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~------- 81 (965)
.+++..|++.|.++.... |.....|..+ ..++...++..+++..+...+...+.. +
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 455555656565555544 3344455555 444555555555555555554422100 0
Q ss_pred ---CchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhh
Q 046930 82 ---FDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFY 158 (965)
Q Consensus 82 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (965)
....+....+..+...|++++|.+.|+.+...+ |.+. ....++..+.+.+++++|+..|+...+..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-------- 165 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-------- 165 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--------
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC--------
Confidence 001233334455555555555555555554432 2222 44444445555555555555554333210
Q ss_pred hhHHhhhhhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHH
Q 046930 159 SCWICGQMVDKGIKP--DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN--LITYTAIIFGFCKKGKLEEAFTVFK 234 (965)
Q Consensus 159 ~~~i~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 234 (965)
.| ...++..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+
T Consensus 166 -------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 166 -------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 01 012344455555555555555555555543221122 2233444445555555555555555
Q ss_pred HHHHc
Q 046930 235 KVEDL 239 (965)
Q Consensus 235 ~~~~~ 239 (965)
++...
T Consensus 233 ~a~a~ 237 (282)
T 4f3v_A 233 WLQTT 237 (282)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-08 Score=103.25 Aligned_cols=198 Identities=8% Similarity=-0.019 Sum_probs=109.2
Q ss_pred ccCCchHHHHHHHHHHHhCCC-----CCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CCchHHHHHH
Q 046930 23 KRNDPEKALLVLKDCLRNHGT-----LPSS----FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKY---PFDNFVCSSV 90 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l 90 (965)
..|++++|..+++++.+.... .++. ..|...+.+|...|++++|...|.++++..... +....++..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356777888888776653210 1121 134445566667777777777777666543100 1123466677
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPN----VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
+.+|...|++++|+..|++++....-..+ ..++..++.+|.. |++++|+..|+++++...
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~--------------- 146 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE--------------- 146 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH---------------
Confidence 77777777777777777776653100111 2355666666666 777777777777665311
Q ss_pred hhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046930 167 VDKGIKP-DTVSYTILLDGFSKEGTIEKAVGILNKMIEDR----LRPN-LITYTAIIFGFCKKGKLEEAFTVFKKVE 237 (965)
Q Consensus 167 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 237 (965)
..+..+ ...+++.+...|.+.|++++|+..|+++++.. ..+. ..++..++.++...|++++|...|++..
T Consensus 147 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 147 -NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 000000 13456666666666677777776666665531 1111 1234444555555566666666666665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-07 Score=96.09 Aligned_cols=249 Identities=12% Similarity=0.028 Sum_probs=175.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 51 CSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIG-KPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
..+..........++|+++++.++..+ |.+..+|+....++...| .+++++.+++.++..+ |.+..+|+....+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wl 132 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 333333444555679999999999999 899999999999999999 5999999999999987 7888899998888
Q ss_pred HHhc-C-ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHH
Q 046930 130 LCML-G-RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIE--------KAVGILN 199 (965)
Q Consensus 130 ~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~ 199 (965)
+... + ++++++.+++++++.+ +.|..+|+.-.-++.+.|.++ ++++.++
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~d---------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPD---------------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSC---------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 8887 7 8999999999999865 367888887776666666666 8999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH-
Q 046930 200 KMIEDRLRPNLITYTAIIFGFCKKGK-------LEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM- 271 (965)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 271 (965)
++++.++. |..+|+-...++.+.++ ++++++.+.+++... +.|...|+-+-..+.+.|....- ++...
T Consensus 192 k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~--~~~~~~ 267 (349)
T 3q7a_A 192 EMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVP--ILPAIL 267 (349)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGG--GHHHHG
T ss_pred HHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccc--cccccc
Confidence 99988766 88889888888777776 678888888888776 56777787766666555543100 00000
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC------CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHc
Q 046930 272 EKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG------ILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEA 339 (965)
Q Consensus 272 ~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 339 (965)
...|...+. ....+... +.++... -.+...++..++..|...++.++|.++++.+.+.
T Consensus 268 ~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 268 PYTASKLNP-DIETVEAF---------GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGTC------------------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccc-cchhHHHH---------HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 000000000 00001111 1111111 1356777888888888888889999999888643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-09 Score=95.70 Aligned_cols=112 Identities=12% Similarity=0.031 Sum_probs=93.9
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 046930 32 LVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 111 (965)
..|+.++... +.+...+..++..+...|++++|+..|+.++..+ |.++.+|..++.++...|++++|+..|++++
T Consensus 8 ~~~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 8 GTIAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp CSHHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456655433 3456677888888999999999999999999888 7888999999999999999999999999999
Q ss_pred HcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 112 SLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
..+ |.++..+..++.++...|++++|+..|+++++..
T Consensus 83 ~l~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 83 VMD--IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 876 6777888899999999999999999999988753
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-09 Score=109.73 Aligned_cols=96 Identities=15% Similarity=0.060 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
..+..++..+...|++++|+..|+.+++.+ |.+..++..++.+|.+.|++++|+..|+++++.+ |.+..++..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 344444444555555555555555555444 4444455555555555555555555555554433 33444444555
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 046930 128 IALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.++...|++++|+..|+++.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.2e-07 Score=90.44 Aligned_cols=223 Identities=7% Similarity=-0.018 Sum_probs=172.7
Q ss_pred HccCCch-HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 22 IKRNDPE-KALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGN----------MSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 22 ~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
.+.|.++ +|+..+..++... |....+|+.-..++...+. +++++.+++.++..+ |.+..+|+..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~---PKny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 4567776 7999999998765 3455556665555555444 689999999999998 8999999999
Q ss_pred HHHHHhcCC--hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCccchhhhhhHHhhhhh
Q 046930 91 VSGFCKIGK--PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR-VNEVNELFVRMESEGLKFDVVFYSCWICGQMV 167 (965)
Q Consensus 91 ~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (965)
.-++...|+ +++++.+++++++.+ |.|..+|+....++...|. ++++++.+.++++.++
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p---------------- 176 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---------------- 176 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS----------------
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC----------------
Confidence 999999995 899999999999988 8899999999998999998 5999999999998753
Q ss_pred hcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------
Q 046930 168 DKGIKPDTVSYTILLDGFSKE--------------GTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKK---------- 223 (965)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 223 (965)
.|..+|+.....+... +.++++++.+.+++...+. |..+|+-+-..+.+.
T Consensus 177 -----~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~ 250 (331)
T 3dss_A 177 -----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEK 250 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHH
T ss_pred -----CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHH
Confidence 6788888777666654 4588999999999988665 888887655555554
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH---HhcCCHhHHHHHHHHHHHC
Q 046930 224 -GKLEEAFTVFKKVEDLGLVADEFVYATLIDGV---CRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 224 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 274 (965)
+.++++++.++++.+.. +.+...+..++... ...+..+++...+.++.+.
T Consensus 251 ~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 251 STVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45789999999999885 33333333333221 1356777888888888876
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-08 Score=88.66 Aligned_cols=124 Identities=7% Similarity=0.018 Sum_probs=105.3
Q ss_pred cccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc
Q 046930 4 TSFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD 83 (965)
Q Consensus 4 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (965)
...|.....|..++..+ ...|++++|+..|++++... +.+..++..++.++...|++++|+..|+++++.+ |.+
T Consensus 10 ~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~ 83 (133)
T 2lni_A 10 HMNPDLALMVKNKGNEC-FQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTF 83 (133)
T ss_dssp CSSSCHHHHHHHHHHHH-HHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTC
T ss_pred CcCcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCc
Confidence 34466777888898887 78999999999999988754 4577888999999999999999999999999988 778
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCC
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGR 135 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (965)
..++..++.++...|++++|+..|++++... |.+...+..+..++...|+
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999876 5566677788877776653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.5e-09 Score=100.60 Aligned_cols=197 Identities=8% Similarity=-0.007 Sum_probs=155.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCchHHHHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCCC------------
Q 046930 59 SQGNMSRAVEVLELMSDENVKYPFDNFVCSSV-------VSGFCKIGKPELAIGFFENAISLGALKPN------------ 119 (965)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------ 119 (965)
..++...|.+.|.++...+ |..+.+|..+ +.++.+.++..+++..+++.+... |+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~---p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS---MSTLNARIAIGGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC---GGGGCCEEECCTTT
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC---hhhhhhhhccCCcc
Confidence 5799999999999999999 8999999999 799999999999999999988732 22
Q ss_pred ----------HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcC
Q 046930 120 ----------VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEG 189 (965)
Q Consensus 120 ----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g 189 (965)
...+..++.++...|++++|.++|+.+...+ |+......+...+.+.+
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~----------------------p~~~~~~~~a~l~~~~~ 149 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG----------------------SEHLVAWMKAVVYGAAE 149 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT----------------------CHHHHHHHHHHHHHHTT
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------------------CchHHHHHHHHHHHHcC
Confidence 1233456778899999999999998887542 44336667777899999
Q ss_pred CHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHhHHH
Q 046930 190 TIEKAVGILNKMIEDRLRPN--LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVAD--EFVYATLIDGVCRRGDLDCAF 265 (965)
Q Consensus 190 ~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 265 (965)
++++|+..|+...... .|. ...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|.
T Consensus 150 r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 150 RWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp CHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999998665431 111 34677889999999999999999999985432143 345666777889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHH
Q 046930 266 RLLEDMEKKGIKPSIVTYNTI 286 (965)
Q Consensus 266 ~~~~~~~~~g~~~~~~~~~~l 286 (965)
.+|+++... .|+...+..|
T Consensus 229 ~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 229 ALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHhc--CCcHHHHHHH
Confidence 999999987 4454444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.9e-09 Score=92.98 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 046930 65 RAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFV 144 (965)
Q Consensus 65 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 144 (965)
.+...|++++..+ |.+..++..++..+...|++++|+..|++++..+ |.++..|..++.++...|++++|+..|+
T Consensus 5 ~~~~~~~~al~~~---p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 5 SGGGTIAMLNEIS---SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp -CCCSHHHHTTCC---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhhHHHHHcCC---HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3345677788777 7888999999999999999999999999999887 7788899999999999999999999999
Q ss_pred HHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 145 RMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
+++..++ .++.++..+..++...|++++|...|+++++..
T Consensus 80 ~al~l~p---------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 80 YGAVMDI---------------------XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHST---------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCC---------------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9988642 457788889999999999999999999998764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-08 Score=91.60 Aligned_cols=132 Identities=8% Similarity=-0.013 Sum_probs=114.7
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
....|..++..+ ...|+++.|+..|.+++... +.+..++..++.++...|++++|+..|+++++.+ |.+..++.
T Consensus 12 ~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~ 85 (166)
T 1a17_A 12 RAEELKTQANDY-FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred HHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHH
Confidence 344778888877 78999999999999999876 4578889999999999999999999999999998 78899999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH--HHHHHHHhcCChhHHHHHHHHHHH
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT--SLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.++.++...|++++|+..|++++... |.+...+. ..+..+...|++++|+..+.+...
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999999976 55666664 444458888999999999988764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-07 Score=95.89 Aligned_cols=167 Identities=13% Similarity=0.048 Sum_probs=125.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHC-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-C----hhHHH
Q 046930 696 TLIYNLCKEGQLLDAKKLFDRMVLK-GFKPST----RIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-D----KFTVS 765 (965)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~ 765 (965)
..+..+...|++++|.+++++..+. ...|+. ..+..++..+...|++++|+..+++++...... + ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788999999999999999874 222332 233467888888899999999999998742222 2 23689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHh----C-CCCCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhcccccc
Q 046930 766 AVINGFCQKGDMEGALGFFLDFNT----K-GVSPDFL-GFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEV 839 (965)
Q Consensus 766 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 839 (965)
.++.+|...|++++|+++|+++++ . +..|... .+..++.+|.+.|++++|+.+++++++..+. .+..+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~------~~~~~ 233 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR------INSMA 233 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTBCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------cCcHH
Confidence 999999999999999999999874 1 2233333 4889999999999999999999999974221 11122
Q ss_pred c-cccHHHHHHHhhhcC-cHHHHHHHHHHHh
Q 046930 840 E-SESVLNFLISLCEQG-SILEAIAILDEIG 868 (965)
Q Consensus 840 ~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 868 (965)
. ...+..++..+.+.| .+++|++.+++..
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 345677888888999 5799999999864
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-08 Score=101.61 Aligned_cols=102 Identities=7% Similarity=-0.046 Sum_probs=85.9
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...+..++..+ ...|++++|+..|+.++... +.+...+..++.++...|++++|+..|+++++.+ |.+..+
T Consensus 1 p~~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~ 74 (281)
T 2c2l_A 1 SPSAQELKEQGNRL-FVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKA 74 (281)
T ss_dssp CCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHH
T ss_pred ChhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHH
Confidence 55667788888877 78889999999999988865 4577788888888889999999999999988887 788888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+..++.+|...|++++|+..|++++..+
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8999999999999999999999888754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-08 Score=87.55 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=108.6
Q ss_pred cccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.|.+...+..++..+ ...|+++.|+..|++++... +.+..++..++.++...|++++|+..++.++..+ |.+..
T Consensus 8 ~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~ 81 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQ-MKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAYSK 81 (131)
T ss_dssp HHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHH
T ss_pred chhhhHHHHHHHHHH-HHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccCHH
Confidence 356667888888887 78999999999999999876 4577889999999999999999999999999987 78889
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRV 136 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (965)
++..++.++...|++++|+..|++++... |.+...+..++.++...|++
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999876 66788888898888888765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.1e-08 Score=90.51 Aligned_cols=131 Identities=12% Similarity=0.085 Sum_probs=111.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|++++... |.+...+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~ 87 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 3567788889999999999999999999988 7889999999999999999999999999999976 6778899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 127 VIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYT--ILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
+.++...|++++|...|+++++..+ .+...+. .++..+...|++++|...+.....
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p---------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKP---------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999987642 3444443 344447778899999988887653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-09 Score=110.46 Aligned_cols=152 Identities=13% Similarity=-0.023 Sum_probs=123.2
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc---------------hHHHH
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---------------NFVCS 88 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~ 88 (965)
.++++.|+..|+.++... +.....+..++..+.+.|++++|+..|+++++.. |.+ ..++.
T Consensus 126 L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCCCCCSHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hccccCChHHHHHHHHHHHHHHH
Confidence 355666766666655432 3356678888999999999999999999999988 555 58899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++.+|.+.|++++|+..|++++..+ |.+..++..++.+|...|++++|+..|+++++..+
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----------------- 261 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP----------------- 261 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----------------
Confidence 99999999999999999999999887 67888999999999999999999999999988642
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKA-VGILNKMIE 203 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 203 (965)
.+..++..+..++.+.|++++| ...|..|..
T Consensus 262 ----~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 262 ----NNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888988888 446666653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-08 Score=94.50 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=108.1
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHhcCCh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSG-FCKIGKP 100 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 100 (965)
...|+++.|+..|+.++... +.+..++..++.+|...|++++|+..|+++++.+ |.++.++..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCc
Confidence 46789999999999999876 5678899999999999999999999999999998 7889999999999 8899999
Q ss_pred --hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 101 --ELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 101 --~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
++|+..|++++... |.+...+..++.++...|++++|...|+++++..
T Consensus 96 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999986 6778899999999999999999999999999864
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-06 Score=92.67 Aligned_cols=363 Identities=10% Similarity=-0.020 Sum_probs=199.7
Q ss_pred CCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH----hcCCh
Q 046930 359 GALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGR-IEEALEIFDELRRM---SISSVACYNCIINGLC----KSGMV 430 (965)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~----~~g~~ 430 (965)
|+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+.++.. ++.+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7788888888888874 3788888877777666663 45567778877765 4567788888777654 24567
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 046930 431 DMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFM 510 (965)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (965)
+.+..+|++++..+ ..+...++.....+....+...+..++.+ ....+..|...++.+
T Consensus 106 ~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~---------------------~~~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGD---------------------TLPIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHH---------------------HhHHHHHHHHHHHHH
Confidence 88888999888742 12222222222222222222222222211 112334444444443
Q ss_pred HhcCCccchhcHHHHHHHHHhcCcchhhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchH
Q 046930 511 RKRGSVVTDQSYYSILKGLDNEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPV 590 (965)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 590 (965)
...-...+...|...+. +.+.++...... +....+...|+++
T Consensus 164 ~~~~~~~s~~~W~~y~~-----------------~E~~~~~~~~~~----------~~~~Rv~~~ye~a----------- 205 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLID-----------------LEMENGMKLGGR----------PHESRMHFIHNYI----------- 205 (493)
T ss_dssp HHHHHTCSHHHHHHHHH-----------------HHHTCTTCCCHH----------HHHHHHHHHHHHH-----------
T ss_pred HHHHhhccHHHHHHHHH-----------------HHhcCCccCcch----------hhHHHHHHHHHHH-----------
Confidence 32100001111211111 111111100000 0011122223332
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 046930 591 NVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQG 670 (965)
Q Consensus 591 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 670 (965)
....| .++..|...+..+.+.|+.++|..+|++.+.. +.+...|.. |....
T Consensus 206 ----------------------l~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~ 256 (493)
T 2uy1_A 206 ----------------------LDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVM 256 (493)
T ss_dssp ----------------------HHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHT
T ss_pred ----------------------HHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhc
Confidence 22222 24667777777777778888888888887776 323333322 22211
Q ss_pred cHHHHHHHHHHHHhC---C------C---CCCHhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046930 671 CFVEAFRLFDSLERI---D------M---VPSEVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCK 738 (965)
Q Consensus 671 ~~~~A~~~~~~~~~~---~------~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 738 (965)
..++. ++.+.+. . . ......|...+....+.+..+.|.++|+++ +.. ..+...|...+..-..
T Consensus 257 e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 257 DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY 331 (493)
T ss_dssp TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH
T ss_pred chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH
Confidence 11111 2222211 0 0 011345666677777788899999999999 421 2344555544444444
Q ss_pred cC-CHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHHHHHHHHHHhcCCCHHHHH
Q 046930 739 FG-QLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLGFLYLVKGLCTKGRMEEAR 816 (965)
Q Consensus 739 ~g-~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~ 816 (965)
.| +.+.|..+|+...+. .|+ ...|...+......|+.+.|..+|+++. .....+...+..-...|+.+.+.
T Consensus 332 ~~~d~~~ar~ife~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HCCChHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 44 699999999999875 354 4556667777788899999999999972 13344665555556789999999
Q ss_pred HHHHHHHh
Q 046930 817 SILREMLQ 824 (965)
Q Consensus 817 ~~~~~~~~ 824 (965)
++++++.+
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999886
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-08 Score=104.05 Aligned_cols=136 Identities=18% Similarity=0.086 Sum_probs=120.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-------------HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-------------SFTFCSLVYSFCSQGNMSRAVEVLELM 73 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (965)
|.....|..++..+ ...|++++|+..|++++...+..++ ..++..++.+|.+.|++++|+..|+++
T Consensus 144 p~~a~~~~~~g~~~-~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 144 LEQSTIVKERGTVY-FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566888888887 7999999999999999987643221 578999999999999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 046930 74 SDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEV-NELFVRMES 148 (965)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 148 (965)
++.+ |.++.++..++.+|...|++++|+..|+++++.. |.+..++..++.++...|++++| ...|++|..
T Consensus 223 l~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 223 LELD---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 8899999999999999999999999999999987 77888999999999999999998 457777754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-06 Score=86.17 Aligned_cols=191 Identities=9% Similarity=0.037 Sum_probs=146.9
Q ss_pred HHHhcCChh-HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 56 SFCSQGNMS-RAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK----------PELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 56 ~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
...+.|.++ +|+..++.++..+ |.+..+|+....++...++ +++++.+++.++..+ |.+..+|+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~ 112 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWH 112 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 345667766 8999999999999 8999999999998887766 689999999999887 78889999
Q ss_pred HHHHHHHhcCC--hhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 046930 125 SLVIALCMLGR--VNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGT-IEKAVGILNKM 201 (965)
Q Consensus 125 ~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 201 (965)
....++...++ +++++.++.++++.++ .|..+|+.-.-+....|. ++++++.++++
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dp---------------------rNy~AW~~R~~vl~~l~~~~~eel~~~~~~ 171 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADE---------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSL 171 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 98888888884 8999999999998753 678889888888888888 68999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc---------
Q 046930 202 IEDRLRPNLITYTAIIFGFCKK--------------GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR--------- 258 (965)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 258 (965)
++.++. |..+|+....++... +.++++++.+...+... |.|...|+-+-..+.+.
T Consensus 172 I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 172 ITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp HHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchH
Confidence 998766 888888777666655 34667777777777665 55666666444333332
Q ss_pred --CCHhHHHHHHHHHHHC
Q 046930 259 --GDLDCAFRLLEDMEKK 274 (965)
Q Consensus 259 --g~~~~A~~~~~~~~~~ 274 (965)
+.++++++.++++.+.
T Consensus 250 ~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 250 KSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 2344555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-08 Score=89.51 Aligned_cols=102 Identities=12% Similarity=-0.065 Sum_probs=62.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...+..++..+ ...|++++|+..|+.++... |.++..+..++.++...|++++|+..|++++..+ |.++.+
T Consensus 15 p~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 88 (142)
T 2xcb_A 15 EDTLEQLYALGFNQ-YQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHH
T ss_pred HHHHHHHHHHHHHH-HHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHH
Confidence 34444555555554 56666666666666666544 3455556666666666666666666666666665 555666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+..++.+|...|++++|+..|++++...
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666666666666666666666666543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.7e-08 Score=98.80 Aligned_cols=173 Identities=11% Similarity=-0.012 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CCch
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSS----FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKY---PFDN 84 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 84 (965)
.+...+..+ ...|++++|+..+..++......+.. ..+..++..+...|++++|+..|+++++..... ....
T Consensus 77 ~l~~~~~~~-~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIML-CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHH-HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 445556665 78899999999999988865432211 234557777888899999999999998754211 1125
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH---cCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhh
Q 046930 85 FVCSSVVSGFCKIGKPELAIGFFENAIS---LGALKPN----VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVF 157 (965)
Q Consensus 85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (965)
.+++.++.+|...|++++|+..|++++. .. +.+ ..++..++.+|...|++++|+..++++++...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~------ 227 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC------ 227 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH------
Confidence 6899999999999999999999999983 22 222 25788999999999999999999999886421
Q ss_pred hhhHHhhhhhhcCCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 046930 158 YSCWICGQMVDKGIKP-DTVSYTILLDGFSKEGTIEKA-VGILNKMIE 203 (965)
Q Consensus 158 ~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 203 (965)
..+... -..+|..++.+|.+.|++++| ...|++++.
T Consensus 228 ----------~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 228 ----------RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ----------HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ----------hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 111111 266788888899999999999 777877754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-07 Score=91.56 Aligned_cols=146 Identities=10% Similarity=0.003 Sum_probs=116.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
..+..++..+...|++++|+..|+.++ ++++.++..++.+|...|++++|+..|++++... |.+..++..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg 78 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence 345677888999999999999999884 3367899999999999999999999999999987 77888999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 046930 128 IALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP-DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRL 206 (965)
Q Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 206 (965)
.++...|++++|+..|+++++..+......+.. ......| ...++..++.++...|++++|...|+++++..+
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI------LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG------GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH------hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999999998643211000000 0000112 247788899999999999999999999998754
Q ss_pred C
Q 046930 207 R 207 (965)
Q Consensus 207 ~ 207 (965)
.
T Consensus 153 ~ 153 (213)
T 1hh8_A 153 E 153 (213)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.8e-08 Score=85.95 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=104.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.+...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|+++++.. +.+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~ 87 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGY 87 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHH
Confidence 3456778999999999999999999999999988 7889999999999999999999999999999976 6788899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcC
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEG 189 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g 189 (965)
..++.++...|++++|+..|+++.+..+ .+...+..+..++...|
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p---------------------~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDS---------------------SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCG---------------------GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCC---------------------CchHHHHHHHHHHHHhc
Confidence 9999999999999999999999987532 23556666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.7e-08 Score=85.00 Aligned_cols=98 Identities=15% Similarity=0.039 Sum_probs=65.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+.+.|++++|+..|+++++.+ |.++.++..++.++.+.|++++|+..|+++++.+ |.+...|..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 3445556666666677777777777766666 5666667777777777777777777777776655 5556666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 046930 127 VIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
+.++...|++++|+..|+++++.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 66677777777777777666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.83 E-value=9.7e-08 Score=82.78 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
...|..++..+ ...|+++.|+..|.+++... +.+..++..++.++...|++++|+..|+.+++.+ |.+..++..
T Consensus 9 ~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAY-YKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHH
Confidence 56788888876 78899999999999988765 4567788888999999999999999999998887 778888999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhc
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCML 133 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (965)
++.++...|++++|...|++++... |.+...+..++.++...
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhc
Confidence 9999999999999999999998876 56677777777666544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=6.3e-09 Score=99.27 Aligned_cols=151 Identities=13% Similarity=0.013 Sum_probs=96.2
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch----------------HHH
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN----------------FVC 87 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------~~~ 87 (965)
.|+++.|...+....... ......+..++..+...|++++|+..|+++++.. |.++ .++
T Consensus 17 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF---IHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -----CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---TTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---hcccccchhhHHHHHHHHHHHHH
Confidence 344555544444322211 1234456677778888888888888888888776 3343 677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhh
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMV 167 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 167 (965)
..++.+|...|++++|+..|++++... |.+..++..++.++...|++++|+..|+++++..+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------------- 153 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP---------------- 153 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC----------------
Confidence 888888888888888888888888776 66777888888888888888888888888876531
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 046930 168 DKGIKPDTVSYTILLDGFSKEGTIEKAV-GILNKMI 202 (965)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 202 (965)
.+..++..+..++...++.+++. ..|..+.
T Consensus 154 -----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 154 -----NNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHC----------
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666776666666665555 3444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-07 Score=95.32 Aligned_cols=163 Identities=10% Similarity=-0.033 Sum_probs=118.9
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCC-CCCCH----hhHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CC----hhhHHH
Q 046930 662 VIHSLCRQGCFVEAFRLFDSLERID-MVPSE----VSYATLIYNLCKEGQLLDAKKLFDRMVLKGFK-PS----TRIYNS 731 (965)
Q Consensus 662 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 731 (965)
.+..+...|++++|...+++..+.. ..|+. ..+..+...+...|++++|++.|+++++.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566777888888888888877632 12221 12334666777778889999999988874211 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCC-hHHHH
Q 046930 732 FIDGYCKFGQLEEAFKFLHDLKIN-----CLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPD-FLGFL 800 (965)
Q Consensus 732 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 800 (965)
++.+|...|++++|+..|+++++. +..+. ..++..++.+|...|++++|++.++++++. +..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999888741 11222 247889999999999999999999988652 22233 34588
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHh
Q 046930 801 YLVKGLCTKG-RMEEARSILREMLQ 824 (965)
Q Consensus 801 ~l~~~~~~~g-~~~eA~~~~~~~~~ 824 (965)
.++.++.+.| .+++|...|++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8999999999 47999999999987
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-08 Score=92.02 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=104.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH-HHhcCC
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA-LCMLGR 135 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 135 (965)
+...|++++|+..|+.+++.+ |.+..++..++.+|...|++++|+..|++++... |.+...+..++.+ +...|+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQ 94 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTT
T ss_pred hhhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCC
Confidence 346789999999999999988 7888999999999999999999999999999876 6778888889988 778999
Q ss_pred h--hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 046930 136 V--NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR 207 (965)
Q Consensus 136 ~--~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (965)
+ ++|+..|+++++..+ .+..++..++.++...|++++|...|+++++..+.
T Consensus 95 ~~~~~A~~~~~~al~~~p---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDS---------------------NEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp CCCHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred cchHHHHHHHHHHHHhCC---------------------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 8 999999999987632 45778888999999999999999999999987543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-07 Score=96.33 Aligned_cols=168 Identities=9% Similarity=-0.039 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHccCChHHHHHHHHHHHHCC---CCCC--h
Q 046930 657 VTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPS-----EVSYATLIYNLCKEGQLLDAKKLFDRMVLKG---FKPS--T 726 (965)
Q Consensus 657 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~ 726 (965)
..+...+..+...|++++|++.+.+.++.....+ ...+..+...+...|++++|++.++++++.. ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888999999999888877432111 1223446667788899999999999988631 1111 4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCC-
Q 046930 727 RIYNSFIDGYCKFGQLEEAFKFLHDLKIN-CLEPD-----KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPD- 795 (965)
Q Consensus 727 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~- 795 (965)
.+++.++.+|...|++++|+..|+++.+. ...|+ ..++..++.+|...|++++|++.+++.++. +..+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57889999999999999999999998732 01232 158889999999999999999999998652 11111
Q ss_pred hHHHHHHHHHHhcCCCHHHH-HHHHHHHHh
Q 046930 796 FLGFLYLVKGLCTKGRMEEA-RSILREMLQ 824 (965)
Q Consensus 796 ~~~~~~l~~~~~~~g~~~eA-~~~~~~~~~ 824 (965)
...+..++.++.+.|++++| ...+++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34588899999999999999 788998876
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.5e-08 Score=84.10 Aligned_cols=102 Identities=6% Similarity=0.003 Sum_probs=93.6
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|.+...|..++..+ ...|++++|+..|.+++... +.++..+..++.++.+.|++++|+..|+++++.+ |.++.+
T Consensus 1 p~~a~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~ 74 (126)
T 3upv_A 1 SMKAEEARLEGKEY-FTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRA 74 (126)
T ss_dssp CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred CchHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHH
Confidence 45667888899887 79999999999999999876 5678899999999999999999999999999998 888999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+..++.++...|++++|+..|++++...
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999853
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.3e-08 Score=85.03 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=77.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-CC----Hh
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALK-PN----VV 121 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~----~~ 121 (965)
..++..++..+.+.|++++|+..|+++++.+ |.++.+|..++.+|...|++++|++.|+++++..+-. ++ ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3456678888888888888888888888887 7788888888888888888888888888888754111 11 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 122 SYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 122 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
+|..++.++...|++++|++.|++.++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677888888888888888888888764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.4e-08 Score=85.30 Aligned_cols=121 Identities=15% Similarity=0.070 Sum_probs=106.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.+...+..++..+...|++++|+..|++++... |.+..++..++.++...|++++|+..|++++... |.+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 84 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHH
Confidence 345678889999999999999999999999988 7889999999999999999999999999999876 67788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCH
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTI 191 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 191 (965)
.++.++...|++++|...|+++.+..+ .+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p---------------------~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDP---------------------DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCc---------------------cchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987632 4577788888888777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=89.68 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=92.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.+...+..++..+.+.|++++|+..|+.++..+ |.++.+|..++.++...|++++|+..|++++..+ |.++..+.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 90 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPF 90 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHH
Confidence 345667888999999999999999999999998 8899999999999999999999999999999987 77888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
.++.++...|++++|+..|+++++.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999875
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-07 Score=80.84 Aligned_cols=99 Identities=18% Similarity=0.264 Sum_probs=91.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+...|++++|++.|++++..+ |.+..++..++.++...|++++|+..|++++... +.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHH
Confidence 5678889999999999999999999999987 7888999999999999999999999999999876 6788899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC
Q 046930 127 VIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 127 ~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
+.++...|++++|...|+++.+..
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999999998753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-07 Score=86.99 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=94.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
+.....|..++..+ ...|++++|+..|++++... +.+...+..++.+|...|++++|+..|+++++.+ |.+..+
T Consensus 8 ~~~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 81 (164)
T 3sz7_A 8 TPESDKLKSEGNAA-MARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD---PKYSKA 81 (164)
T ss_dssp CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred hhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHH
Confidence 45566888888887 78999999999999999876 4578889999999999999999999999999998 788999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
|..++.+|...|++++|+..|++++... |.+...|.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 117 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAE--GNGGSDAM 117 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSSCCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHH
Confidence 9999999999999999999999999876 44444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.2e-08 Score=82.92 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=94.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc---
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD--- 83 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 83 (965)
+.....+..++..+ .+.|++++|+..|.+++... |.+..++..++.+|...|++++|+..|+++++.++..+..
T Consensus 5 ~d~A~a~~~lG~~~-~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 5 TDAAIAEKDLGNAA-YKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 34556888899988 79999999999999999976 5678889999999999999999999999999876322221
Q ss_pred -hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 84 -NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 84 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
..++..++.++...|++++|++.|++++.. .|++.....
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~ 121 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHH
Confidence 357889999999999999999999999985 467665443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=5.9e-08 Score=83.22 Aligned_cols=96 Identities=15% Similarity=0.029 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.+..++..+.+.|++++|+..|+++++.+ |.++.+|..++.++...|++++|+..|++++..+ |.+...+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 34556667777777888888887777777 6777777777777777888888888887777766 566677777777
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 046930 129 ALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 129 ~~~~~~~~~~A~~~~~~~~~~ 149 (965)
++...|++++|+..|+++++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777888888777777754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-07 Score=82.95 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=77.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+.++..+..++..+...|++++|+..|+.++..+ |.++.++..++.++...|++++|+..|++++..+ |.+...+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 80 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAH 80 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHH
Confidence 3456677777777888888888888888877777 6677778888888888888888888888887765 5667777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
..++.++...|++++|+..|+++++.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77888888888888888888777764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-07 Score=78.29 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSS 89 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (965)
...+..++..+ ...|++++|+..|..++... +.+...+..++.++...|++++|...++++++.+ |.+..++..
T Consensus 4 ~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKA-LSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHH-HHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cccHHHHHH
Confidence 34666777766 67888888888888887765 4466777788888888888888888888888877 677788888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 90 VVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
++.++...|++++|...|+++++.. |.+...+..+..+
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 115 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHE--ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHh
Confidence 8888888888888888888888765 4555555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=4e-07 Score=77.78 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=91.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
....+..++..+...|++++|+..|+.++..+ |.++.++..++.++...|++++|+..|++++... |.+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 77 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 34567888999999999999999999999988 7889999999999999999999999999999976 667889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
++.++...|++++|...|+++.+.+
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999998764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=90.49 Aligned_cols=135 Identities=14% Similarity=0.035 Sum_probs=108.1
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC--------------HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS--------------SFTFCSLVYSFCSQGNMSRAVEVLELMS 74 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (965)
....+..++..+ ...|++++|+..|++++...+..++ ..++..++.++...|++++|+..++.++
T Consensus 37 ~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEF-FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444677778776 7899999999999999986543331 2788899999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHH-HHHHHHHHC
Q 046930 75 DENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVN-ELFVRMESE 149 (965)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~ 149 (965)
+.+ |.+..++..++.+|...|++++|+..|++++... |.+..++..+..++...++.+++. ..|..+...
T Consensus 116 ~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 116 KID---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HhC---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998 8899999999999999999999999999999976 677888889999888888888777 556666543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-07 Score=83.40 Aligned_cols=103 Identities=7% Similarity=-0.056 Sum_probs=93.9
Q ss_pred cccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
.|.+...|..++..+ ...|++++|+..|..++... +.+..++..++.++...|++++|+..|+.+++.+ |.++.
T Consensus 5 ~~~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~ 78 (137)
T 3q49_B 5 KSPSAQELKEQGNRL-FVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVK 78 (137)
T ss_dssp -CCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHH
T ss_pred ccccHHHHHHHHHHH-HHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHH
Confidence 356677888999887 89999999999999999876 4578899999999999999999999999999998 78999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
++..++.++...|++++|+..|++++...
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-07 Score=84.89 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=94.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
.+...+..++..+...|++++|+..|+++++.+ |.+..+|..++.+|...|++++|+..|++++..+ |.+...|.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 83 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 346678889999999999999999999999998 8899999999999999999999999999999987 77788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.++.++...|++++|+..|+++++..
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998864
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-07 Score=88.66 Aligned_cols=162 Identities=9% Similarity=-0.051 Sum_probs=111.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC----CCCCHhhHHHHHHHHHhc
Q 046930 58 CSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGA----LKPNVVSYTSLVIALCML 133 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 133 (965)
...|++++|.+.++.+.. ++ +....++..++.++...|++++|+..|++++.... .+....++..++.++...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcC-Ch--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 467888888886655543 32 46778889999999999999999999999886210 122345777888899999
Q ss_pred CChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCC
Q 046930 134 GRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP--DTVSYTILLDGFSKEGTIEKAVGILNKMIEDR---LRP 208 (965)
Q Consensus 134 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~ 208 (965)
|++++|...+++.++.. ...+..+ ...++..+...+...|++++|...+++.+... ..+
T Consensus 80 g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 143 (203)
T 3gw4_A 80 GNWDAARRCFLEERELL----------------ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143 (203)
T ss_dssp TCHHHHHHHHHHHHHHH----------------HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHH----------------HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch
Confidence 99999999999887631 0111111 24567788888999999999999998887531 111
Q ss_pred C--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 209 N--LITYTAIIFGFCKKGKLEEAFTVFKKVED 238 (965)
Q Consensus 209 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 238 (965)
. ..++..+..++...|++++|...+++..+
T Consensus 144 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 23356677777788888888887777654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=79.64 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=56.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--CHhhHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKP--NVVSYT 124 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 124 (965)
...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|+++++.. +. +...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHH
Confidence 3444555555555666666666666655555 4555555666666666666666666666665543 33 455555
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHC
Q 046930 125 SLVIALCML-GRVNEVNELFVRMESE 149 (965)
Q Consensus 125 ~l~~~~~~~-~~~~~A~~~~~~~~~~ 149 (965)
.++.++... |++++|++.++++...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 555556666 6666666666665544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-07 Score=88.70 Aligned_cols=164 Identities=12% Similarity=0.012 Sum_probs=122.1
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC---CCCCchHHHHHHHHHHHhcC
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV---KYPFDNFVCSSVVSGFCKIG 98 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g 98 (965)
...|++++|.+.++.+.. .+ .....++..++.++...|++++|+..|+++++... ..+....++..++.++...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-Ch-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 467999999996555432 21 24567889999999999999999999999888210 11566788999999999999
Q ss_pred ChhhHHHHHHHHHHcCC-CCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCC-
Q 046930 99 KPELAIGFFENAISLGA-LKPN----VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIK- 172 (965)
Q Consensus 99 ~~~~A~~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 172 (965)
++++|+..|++++.... .+.+ ...+..++.++...|++++|...+++.+.... ..+..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~ 144 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ----------------QADDQV 144 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------------HTTCHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----------------hccchH
Confidence 99999999999987510 1112 34678899999999999999999999875311 11111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIE 203 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 203 (965)
.-..++..+..++...|++++|.+.|++.++
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1134567888999999999999999998875
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-07 Score=77.92 Aligned_cols=102 Identities=9% Similarity=-0.085 Sum_probs=93.5
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--ch
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF--DN 84 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 84 (965)
|.+...|..++..+ ...|++++|+..|++++... +.+...+..++.++...|++++|+..|+++++.+ |. +.
T Consensus 3 p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~ 76 (112)
T 2kck_A 3 DQNPEEYYLEGVLQ-YDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI---EDEYNK 76 (112)
T ss_dssp CSSTTGGGGHHHHH-HSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CCTTCH
T ss_pred CCcHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccchH
Confidence 66777888888887 89999999999999999876 4577889999999999999999999999999998 77 89
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHHHHHHHcC
Q 046930 85 FVCSSVVSGFCKI-GKPELAIGFFENAISLG 114 (965)
Q Consensus 85 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 114 (965)
.++..++.++... |++++|++.|++++...
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999999999 99999999999999876
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-07 Score=80.89 Aligned_cols=98 Identities=11% Similarity=-0.003 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..++.++..+ .+.|++++|+..|+.+++.. |.+..++..++.++...|++++|+..|+++++.+ |.+..++..+
T Consensus 18 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~l 91 (121)
T 1hxi_A 18 ENPMEEGLSM-LKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAAL 91 (121)
T ss_dssp SCHHHHHHHH-HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred hhHHHHHHHH-HHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 3577777776 79999999999999999876 5678899999999999999999999999999999 8899999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+.++...|++++|+..|+++++..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-07 Score=81.02 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=77.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC----c-----hHHHHHHHHHHHhcCChhhHHHHHHHHHHc-----
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF----D-----NFVCSSVVSGFCKIGKPELAIGFFENAISL----- 113 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 113 (965)
..+...+..+.+.|++++|+..|+++++.++.+|. + ..+|+.++.++.+.|++++|+..|++++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44556666777777777777777777777632111 2 338899999999999999999999999987
Q ss_pred --CCCCCCHhhH----HHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 114 --GALKPNVVSY----TSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 114 --~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
+ |.+..+| +..+.++...|++++|+..|+++++.
T Consensus 92 e~~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6 5556688 88999999999999999999998875
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-07 Score=81.02 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=91.0
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc----
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---- 83 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 83 (965)
..+..|..++..+ ...|+++.|+..|..++... +.+..++..++.++...|++++|+..|+.++...+..+.+
T Consensus 2 ~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 2 KQALKEKELGNDA-YKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 4456777888876 78899999999999988865 4567788888888999999999999999988876211111
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
..++..++.++...|++++|++.|++++... |+...+..+..+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~ 122 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 7788889999999999999999999998864 4666665555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-07 Score=81.16 Aligned_cols=95 Identities=14% Similarity=0.005 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----
Q 046930 728 IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD-------------KFTVSAVINGFCQKGDMEGALGFFLDFNTK---- 790 (965)
Q Consensus 728 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 790 (965)
.+...+..+.+.|++++|+..|+++++. .|+ ..+|..++.++...|++++|+..|+++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4455566666677777777777766653 443 238888888899999999999999988762
Q ss_pred -CCCCChHH-H----HHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 791 -GVSPDFLG-F----LYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 791 -~~~p~~~~-~----~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.+.|+... | +.++.++...|++++|+..|+++++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 23898765 8 8999999999999999999999998
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.4e-07 Score=80.85 Aligned_cols=115 Identities=13% Similarity=0.018 Sum_probs=91.7
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS---SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD 83 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (965)
|.+...+..++..+ ...|++++|+..|++++... +.+ ...+..++.++...|++++|+..|+.+++.+ |.+
T Consensus 25 ~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~ 98 (148)
T 2dba_A 25 ASSVEQLRKEGNEL-FKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GGD 98 (148)
T ss_dssp CCCHHHHHHHHHHH-HTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SCC
T ss_pred hHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---ccC
Confidence 45666788888876 78899999999999988644 222 6778888888899999999999999988887 677
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 84 NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
..++..++.++...|++++|+..|++++... |.+...+..+..+
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 142 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 8888999999999999999999999998876 5556666555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=78.60 Aligned_cols=102 Identities=15% Similarity=0.005 Sum_probs=92.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc---hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV 120 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 120 (965)
+.+...+..++..+...|++++|+..|+.+++.+ |.+ ..++..++.+|...|++++|+..|++++... |.+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 99 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDV 99 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCH
Confidence 3467788899999999999999999999999987 555 8899999999999999999999999999876 6678
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 121 VSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
..+..++.++...|++++|...|+++++..
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 899999999999999999999999998763
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.6e-07 Score=80.78 Aligned_cols=98 Identities=11% Similarity=0.153 Sum_probs=88.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC-------
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN------- 119 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------- 119 (965)
+..+..++..+...|++++|+..|+.+++.+ |.+..++..++.++...|++++|+..|++++... +.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--cccchhHHHH
Confidence 4567888999999999999999999999988 7889999999999999999999999999999865 333
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 120 VVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
..++..++.++...|++++|...|+++.+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 678889999999999999999999999875
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=76.28 Aligned_cols=106 Identities=10% Similarity=-0.086 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc---hHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---NFVC 87 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~ 87 (965)
.++.++..+ ...|++++|+..|..++...+..+. ..++..++.++...|++++|+..|+.+++.+ |.+ +.++
T Consensus 4 ~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~ 79 (129)
T 2xev_A 4 TAYNVAFDA-LKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGL 79 (129)
T ss_dssp CHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHH
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHH
Confidence 345566665 6888888888888888876532211 1567778888888888888888888888877 444 7778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
..++.++...|++++|+..|++++... |.+....
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 113 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQY--PGSDAAR 113 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCChHHH
Confidence 888888888888888888888888765 4444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.7e-07 Score=99.42 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=113.0
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-------------HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-------------SFTFCSLVYSFCSQGNMSRAVEVLELM 73 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (965)
|.....|+.++..+ .+.|+++.|+..|++++...+..+. ..++..++.+|.+.|++++|+..|+++
T Consensus 265 ~~~a~~~~~~G~~~-~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 265 LEQAAIVKEKGTVY-FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34556788888887 7899999999999999986643221 578899999999999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHH-HHHHHHH
Q 046930 74 SDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNE-LFVRMES 148 (965)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~ 148 (965)
++.+ |.+..+|+.++.+|...|++++|+..|+++++.. |.+..++..+..++.+.++++++.. .+.+|..
T Consensus 344 l~~~---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 344 LGLD---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhcC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998 8899999999999999999999999999999876 6677789999999999999888764 5555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.7e-08 Score=105.32 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=121.8
Q ss_pred cCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc---------------hHHHH
Q 046930 24 RNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD---------------NFVCS 88 (965)
Q Consensus 24 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~ 88 (965)
.++++.|+..|+.++... +.....+..++..+.+.|++++|+..|+++++.. |.+ ..+|.
T Consensus 247 l~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL---EMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---TTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccCChHHHHHHHHHHHHHHH
Confidence 345566666665554432 2345678889999999999999999999999987 455 68999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
.++.+|.+.|++++|+..|++++..+ |.+..+|..++.+|...|++++|+..|+++++..+
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P----------------- 382 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP----------------- 382 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------
Confidence 99999999999999999999999987 77889999999999999999999999999998642
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 046930 169 KGIKPDTVSYTILLDGFSKEGTIEKAVG-ILNKMI 202 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 202 (965)
.+..++..+..++.+.++.+++.. .+..|.
T Consensus 383 ----~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 383 ----QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888887764 445544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-06 Score=75.73 Aligned_cols=100 Identities=10% Similarity=0.062 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC---HhhHHH
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN---VVSYTS 125 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~ 125 (965)
.+..++..+...|++++|+..|+.+++.++..+....++..++.++...|++++|+..|++++... |.+ +.++..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 355678889999999999999999999884323333799999999999999999999999999876 445 677889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
++.++...|++++|...|+++++..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999998763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-07 Score=83.45 Aligned_cols=105 Identities=9% Similarity=-0.001 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHh--------CC--------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRN--------HG--------TLPSSFTFCSLVYSFCSQGNMSRAVEVLELM 73 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--------~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (965)
...+...+..+ .+.|++++|+..|..++.. .+ .+....++..++.+|.+.|++++|+..++.+
T Consensus 11 a~~~~~~G~~~-~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNEL-FVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45777888887 7899999999999999986 11 1223467888999999999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH
Q 046930 74 SDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV 120 (965)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 120 (965)
++.+ |.++.+|..++.+|...|++++|+..|++++..+ |.+.
T Consensus 90 l~~~---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~ 131 (162)
T 3rkv_A 90 LKRE---ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAA 131 (162)
T ss_dssp HHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGH
T ss_pred HhcC---CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCH
Confidence 9998 8889999999999999999999999999999876 4444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.55 E-value=6.2e-08 Score=105.93 Aligned_cols=129 Identities=7% Similarity=-0.011 Sum_probs=107.2
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
....+..++..+ .+.|++++|+..|+++++.. +.+..++..++.+|.+.|++++|++.|+++++.+ |.+..++.
T Consensus 5 ~a~~~~~lg~~~-~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~ 78 (477)
T 1wao_1 5 RAEELKTQANDY-FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYY 78 (477)
T ss_dssp HHTTSSSSSSST-TTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHH
T ss_pred HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 334455556655 78999999999999999976 5578899999999999999999999999999998 88999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHH
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA--LCMLGRVNEVNELFVR 145 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~ 145 (965)
.++.+|...|++++|++.|+++++.. |.+..++..+..+ +.+.|++++|++.+++
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999976 5566677766666 8889999999999983
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-07 Score=79.55 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=71.8
Q ss_pred ccCCchHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 23 KRNDPEKALLVLKDCLRNHG-TLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
..|++++|+..|++++.... .+.+..++..++.+|...|++++|+..|+++++.+ |.++.++..++.++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHH
Confidence 35888999999999887421 13456678889999999999999999999999988 788899999999999999999
Q ss_pred hHHHHHHHHHHcC
Q 046930 102 LAIGFFENAISLG 114 (965)
Q Consensus 102 ~A~~~~~~~~~~~ 114 (965)
+|+..|++++...
T Consensus 79 ~A~~~~~~al~~~ 91 (117)
T 3k9i_A 79 QGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=80.00 Aligned_cols=99 Identities=9% Similarity=-0.015 Sum_probs=90.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhc------------------CCCCCCchHHHHHHHHHHHhcCChhhHHHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDE------------------NVKYPFDNFVCSSVVSGFCKIGKPELAIGFFE 108 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 108 (965)
...+...+..+.+.|++++|+..|..++.. + |.+..+|..++.+|.+.|++++|+..++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD---RKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH---HTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH---HHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 456778899999999999999999999987 4 5667899999999999999999999999
Q ss_pred HHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 109 NAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
+++..+ |.++.+|..++.++...|++++|+..|+++++..
T Consensus 88 ~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 88 EVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 999987 7788999999999999999999999999999864
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.3e-06 Score=89.32 Aligned_cols=198 Identities=10% Similarity=-0.066 Sum_probs=123.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccc----------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCC
Q 046930 628 VAALCREGYVNKALDLCAFAKNKGITVN----------------IVTYNTVIHSLCRQGCFVEAFRLFDSLERI-DMVPS 690 (965)
Q Consensus 628 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~ 690 (965)
+..+.+.|++++|++.|..+.+.....+ ..++..++..|...|++++|.+++..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445566777777777777665432211 123566778888888888888888777652 11111
Q ss_pred H----hhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--C--C
Q 046930 691 E----VSYATLIYNLCKEGQLLDAKKLFDRMVLK----GFKP-STRIYNSFIDGYCKFGQLEEAFKFLHDLKIN--C--L 757 (965)
Q Consensus 691 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~ 757 (965)
. .+.+.+...+...|++++|+++++..+.. +..+ ...++..++.+|...|++++|..+++++... + -
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 22333444455667888888888777642 2222 2456677888888888888888888776543 1 1
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 758 EPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPDF--LGFLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 758 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
.|. ..++..++..|...|++++|..++++.+.. +..|.. ..+..++..+...|++++|...|.++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 121 246777788888888888888888876541 111221 22555666777788888888888777653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=4.1e-06 Score=93.06 Aligned_cols=175 Identities=10% Similarity=0.030 Sum_probs=133.6
Q ss_pred HhcCC-hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 58 CSQGN-MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK----------PELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 58 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
.+.|. .++|++.++.++..+ |.+..+|+....++...|+ ++++++.+++++..+ |.+..+|+..
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR 113 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHR 113 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 34444 457799999999999 8899999999999998888 899999999999887 7888899998
Q ss_pred HHHHHhcC--ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 046930 127 VIALCMLG--RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEG-TIEKAVGILNKMIE 203 (965)
Q Consensus 127 ~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 203 (965)
..++.+.+ +++++++.++++++.++ .+..+|+.-..++.+.| .++++++.++++++
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~---------------------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADE---------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhcc---------------------ccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 88888998 67999999999998653 67888888888888888 88999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 046930 204 DRLRPNLITYTAIIFGFCKK--------------GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGD 260 (965)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 260 (965)
.++. |..+|+....++.+. +.++++++.+.+++... +.|...|+-+...+.+.++
T Consensus 173 ~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 173 RNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp TTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 7766 888888877776653 33455555555555544 3344455544444444333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-07 Score=101.81 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
+..++..+.+.|++++|++.|+++++.+ |.+..++..++.+|.+.|++++|++.|+++++.+ |.+..++..++.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~ 83 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 83 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 3445566788999999999999999998 8889999999999999999999999999999986 6788899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDG--FSKEGTIEKAVGILN 199 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 199 (965)
|...|++++|++.|+++++..+ .+...+..+..+ +.+.|++++|++.++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p---------------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKP---------------------HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHST---------------------TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988642 234455555555 888899999999988
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.2e-07 Score=77.53 Aligned_cols=90 Identities=18% Similarity=0.101 Sum_probs=77.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhH
Q 046930 59 SQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNE 138 (965)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (965)
..|++++|+..|+++++.+...|.+..++..++.+|...|++++|+..|+++++.. |.++.++..++.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 46899999999999999842127888999999999999999999999999999987 7778899999999999999999
Q ss_pred HHHHHHHHHHCC
Q 046930 139 VNELFVRMESEG 150 (965)
Q Consensus 139 A~~~~~~~~~~~ 150 (965)
|+..|++++...
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.6e-06 Score=92.65 Aligned_cols=177 Identities=6% Similarity=-0.037 Sum_probs=149.2
Q ss_pred ccCCc-hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 23 KRNDP-EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGN----------MSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 23 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
+.|++ ++|+..+..++... |....+|..-..++...|+ ++++++.++.+++.+ |.+..+|+..+
T Consensus 40 ~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 34444 57899999999876 4566778777777877777 999999999999999 89999999999
Q ss_pred HHHHhcC--ChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhh
Q 046930 92 SGFCKIG--KPELAIGFFENAISLGALKPNVVSYTSLVIALCMLG-RVNEVNELFVRMESEGLKFDVVFYSCWICGQMVD 168 (965)
Q Consensus 92 ~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 168 (965)
-++.+.| +++++++.++++++.+ +.+..+|+....++.+.| .++++++.+.++++.++
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p----------------- 175 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF----------------- 175 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-----------------
T ss_pred HHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-----------------
Confidence 9999999 6699999999999988 889999999999999999 89999999999988653
Q ss_pred cCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 046930 169 KGIKPDTVSYTILLDGFSKE--------------GTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEE 228 (965)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 228 (965)
.|..+|+....++.+. +.++++++.+++++...+. |..+|+-+...+.+.++.++
T Consensus 176 ----~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 176 ----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ----CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ----CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5788888888777663 5689999999999987655 78888888777777766443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1e-06 Score=92.43 Aligned_cols=125 Identities=10% Similarity=0.035 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCC--------------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHG--------------TLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDE 76 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (965)
..|..++..+ .+.|++++|+..|++++...+ .+....++..++.+|.+.|++++|+..++++++.
T Consensus 224 ~~~~~~g~~~-~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTF-FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 3577778876 799999999999999997210 1234678899999999999999999999999998
Q ss_pred CCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 046930 77 NVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNE 141 (965)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 141 (965)
+ |.+..++..++.+|...|++++|+..|+++++.. |.+...+..+..++...++.+++..
T Consensus 303 ~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 D---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 8899999999999999999999999999999986 6677888888888888887777654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.3e-07 Score=94.38 Aligned_cols=135 Identities=9% Similarity=-0.020 Sum_probs=86.9
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCH-----------------HhHHHHHHHHHhcCChhHHHHHH
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSS-----------------FTFCSLVYSFCSQGNMSRAVEVL 70 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~ 70 (965)
.....+..++..+ ...|++++|+..|++++...+ .+. .++..++.+|.+.|++++|+..|
T Consensus 177 ~~a~~~~~~g~~~-~~~g~~~~A~~~y~~Al~~~p--~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 177 GAADRRKMDGNSL-FKEEKLEEAMQQYEMAIAYMG--DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHHHT-CSSSCCHHHHHHHHHHHHHSC--HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhc--cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455677788776 799999999999999998652 222 27889999999999999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHHHHC
Q 046930 71 ELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA-LCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~ 149 (965)
+++++.+ |.+..+|+.++.+|...|++++|+..|++++... |.+..++..+..+ ....+..+++...|.++...
T Consensus 254 ~~al~~~---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 254 NIVLTEE---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999998 8899999999999999999999999999999865 5566677767665 34456778888999998865
Q ss_pred C
Q 046930 150 G 150 (965)
Q Consensus 150 ~ 150 (965)
.
T Consensus 329 ~ 329 (338)
T 2if4_A 329 K 329 (338)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=90.42 Aligned_cols=123 Identities=11% Similarity=-0.021 Sum_probs=106.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh----------------cCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSD----------------ENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 111 (965)
..+..++..+.+.|++++|+..|+++++ .+ |.+..+|..++.+|.+.|++++|+..|++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~---~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ---PVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH---HHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4577889999999999999999999998 44 6778999999999999999999999999999
Q ss_pred HcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCH
Q 046930 112 SLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTI 191 (965)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 191 (965)
+.+ |.+..++..++.+|...|++++|+..|+++++..+ .+...+..+..++...++.
T Consensus 301 ~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P---------------------~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 301 EID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP---------------------EDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp TTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHHHH
T ss_pred HhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHHHHH
Confidence 876 67888999999999999999999999999998642 3577777788777777777
Q ss_pred HHHHH
Q 046930 192 EKAVG 196 (965)
Q Consensus 192 ~~A~~ 196 (965)
+++.+
T Consensus 358 ~~a~k 362 (370)
T 1ihg_A 358 KDKEK 362 (370)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.8e-07 Score=97.69 Aligned_cols=139 Identities=11% Similarity=-0.043 Sum_probs=106.4
Q ss_pred HHHhcCCHHHHHHHHHHhHhC-----C-CCCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccc
Q 046930 770 GFCQKGDMEGALGFFLDFNTK-----G-VSPDFL-GFLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESE 842 (965)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (965)
.+...|++++|+.++++.++. | -.|+.. ++++|+.+|..+|++++|..+++++++..... ....+|+..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~----lG~~Hp~~a 393 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL----YHHNNAQLG 393 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----SCTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----cCCCCHHHH
Confidence 455789999999999887652 1 234443 38899999999999999999999999853221 222566544
Q ss_pred -cHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhhhhhhhhhccccccccccccccccCccccccccccc
Q 046930 843 -SVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHN 921 (965)
Q Consensus 843 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (965)
.+.+|+..|..+|++++|+.+|++. +..+++
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~A------------------------------------------------l~i~~~ 425 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKA------------------------------------------------YAILLV 425 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH------------------------------------------------HHHHHH
Confidence 5777888899999999999999985 234555
Q ss_pred chhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhccc
Q 046930 922 VEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLSSF 961 (965)
Q Consensus 922 ~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~ 961 (965)
.+... ||+......++.. +...|++++|+.+|+++.+..
T Consensus 426 ~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 426 THGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 7877777777766 889999999999999987754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-05 Score=87.54 Aligned_cols=131 Identities=9% Similarity=0.010 Sum_probs=65.4
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCCH---------------HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 046930 17 IQGFCIKRNDPEKALLVLKDCLRNHGTLPSS---------------FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYP 81 (965)
Q Consensus 17 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 81 (965)
+..+ .+.|++++|++.|..+++..+...+. .++..++.+|...|++++|.+.+..+.......+
T Consensus 11 a~~l-~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRL-VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHH-HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHH-HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3444 56677777777777766644322211 1245566666666666666666665554321101
Q ss_pred C---chHHHHHHHHHHHhcCChhhHHHHHHHHHHcC----CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 82 F---DNFVCSSVVSGFCKIGKPELAIGFFENAISLG----ALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 82 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
. ...+...++..+...|++++|+.++++++... .......++..++..+...|++++|..+++++..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 1 11223334444445556666666665554321 0011123445555556666666666665555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.2e-06 Score=78.29 Aligned_cols=132 Identities=15% Similarity=0.127 Sum_probs=79.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----hh
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVLKGF-KPS----TRIYNSFIDGYCKFGQLEEAFKFLHDLKINCL-EPD----KF 762 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~ 762 (965)
++..+...+...|++++|++.++++++..- .++ ..++..++.++...|++++|...++++..... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555555555555555555543200 001 13556666677777777777777766554210 011 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 763 TVSAVINGFCQKGDMEGALGFFLDFNTK----GVSPD-FLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
++..++.++...|++++|++.+++.++. +..+. ...+..++..+...|++++|...++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777777888888888887777542 21122 22377788888888999999988888876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=91.22 Aligned_cols=131 Identities=12% Similarity=0.028 Sum_probs=71.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch-----------------HHHHHHHHHHHhcCChhhHHHHHHHH
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN-----------------FVCSSVVSGFCKIGKPELAIGFFENA 110 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 110 (965)
..+..++..+.+.|++++|+..|++++... |.+. .++..++.+|.+.|++++|+..|+++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456677777888888888888888888876 4444 26777777777777777777777777
Q ss_pred HHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHH-HHhcC
Q 046930 111 ISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDG-FSKEG 189 (965)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~~g 189 (965)
+..+ |.+..+|..++.+|...|++++|+..|+++++..+ .+..++..+... ....+
T Consensus 257 l~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p---------------------~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 257 LTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP---------------------DDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------------CCHHHHHHHHHHHHHHHH
Confidence 7765 55666777777777777777777777777765421 233444444443 22344
Q ss_pred CHHHHHHHHHHHHHC
Q 046930 190 TIEKAVGILNKMIED 204 (965)
Q Consensus 190 ~~~~A~~~~~~~~~~ 204 (965)
..+++...|..|...
T Consensus 314 ~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 314 LYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHhhCC
Confidence 556666666666654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-06 Score=76.81 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=75.8
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCCh----------hhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 58 CSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKP----------ELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
.+.+.+++|++.++.+++.+ |.++.+|..++.++...+++ ++|+..|+++++.+ |.+..+|+.++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHH
Confidence 34567889999999999988 88899999999999988775 49999999999987 67788999999
Q ss_pred HHHHhcC-----------ChhHHHHHHHHHHHCC
Q 046930 128 IALCMLG-----------RVNEVNELFVRMESEG 150 (965)
Q Consensus 128 ~~~~~~~-----------~~~~A~~~~~~~~~~~ 150 (965)
.+|...| ++++|++.|+++++.+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 9998774 8999999999999863
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-06 Score=77.97 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=108.9
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CC
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS----SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVK---YP 81 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 81 (965)
...++..++..+ ...|++++|+..|++++......++ ..++..++.++...|++++|...++.+++.... .+
T Consensus 8 ~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 8 QGRAFGNLGNTH-YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 345777888876 7899999999999998875422122 246888999999999999999999998775311 12
Q ss_pred CchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 82 FDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN----VVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 82 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
....++..++.++...|++++|+..|++++......++ ...+..++.++...|++++|...+++..+.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 23567889999999999999999999999864211112 346778899999999999999999998763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-06 Score=75.38 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=81.2
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh----------hHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 23 KRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNM----------SRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
+-+.|++|++.++.++... |.++..+..++.++...+++ ++|+..|+++++.+ |.+..+|+.++.
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---P~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC---cCcHHHHHHHHH
Confidence 3456899999999999987 56888999999999988875 49999999999999 899999999999
Q ss_pred HHHhcC-----------ChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 93 GFCKIG-----------KPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 93 ~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
+|...| ++++|++.|+++++.+ |+...|.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~---P~~~~y~ 128 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ---PDNTHYL 128 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhC---CCCHHHH
Confidence 999875 8999999999999976 5544443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.4e-07 Score=75.55 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=69.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC------
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN------ 119 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------ 119 (965)
+...+..++..+...|++++|+..|+++++.+ |.++.++..++.++...|++++|+..|++++... |.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHH
Confidence 34566777777888888888888888888777 6777788888888888888888888888888754 333
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHH
Q 046930 120 VVSYTSLVIALCMLGRVNEVNELFVR 145 (965)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 145 (965)
...+..++.++...|++++|+..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 55666677777777777666655543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.25 E-value=3e-06 Score=71.90 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHH
Q 046930 28 EKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFF 107 (965)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 107 (965)
+.|+..|++++... +.+...+..++.++...|++++|+..|+++++.+ |.+..++..++.+|...|++++|+..|
T Consensus 2 ~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45778888888755 4577888889999999999999999999999888 778889999999999999999999999
Q ss_pred HHHHHcC
Q 046930 108 ENAISLG 114 (965)
Q Consensus 108 ~~~~~~~ 114 (965)
++++...
T Consensus 77 ~~al~~~ 83 (115)
T 2kat_A 77 ESGLAAA 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.3e-06 Score=89.01 Aligned_cols=132 Identities=8% Similarity=-0.080 Sum_probs=95.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhC---CCCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHHhHh-----CC-CCCChHH-HH
Q 046930 735 GYCKFGQLEEAFKFLHDLKIN---CLEP---D-KFTVSAVINGFCQKGDMEGALGFFLDFNT-----KG-VSPDFLG-FL 800 (965)
Q Consensus 735 ~~~~~g~~~~A~~~~~~~~~~---~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~~~-~~ 800 (965)
.+..+|++++|+.++++.++. -+.| + ..++++|+.+|...|++++|+.+++++++ .| -.|+... ++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455678888888888776643 1223 2 24788888888888888888888888764 22 3455555 89
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHH-HHhhhcCcHHHHHHHHHHHhhc
Q 046930 801 YLVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFL-ISLCEQGSILEAIAILDEIGYM 870 (965)
Q Consensus 801 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~ 870 (965)
+|+..|..+|++++|..+|+++++..... .+..+|.......++ ..+.+.|++++|+.+|.++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~----lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVT----HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999843322 233566555444444 4566899999999999987543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=64.53 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=61.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
...+..++..+...|++++|+..|+++++.+ |.+..++..++.++...|++++|+..|++++... |.+...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHH
Confidence 4566777777778888888888888887776 6677778888888888888888888888887765 5566677777
Q ss_pred HHHHHhc
Q 046930 127 VIALCML 133 (965)
Q Consensus 127 ~~~~~~~ 133 (965)
+.++...
T Consensus 84 ~~~~~~~ 90 (91)
T 1na3_A 84 GNAKQKQ 90 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7666544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-05 Score=67.84 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 046930 64 SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELF 143 (965)
Q Consensus 64 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 143 (965)
++|+..|+.+++.+ |.++.++..++.+|...|++++|+..|++++..+ |.+...|..++.++...|++++|...|
T Consensus 2 ~~a~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQG---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTT---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46889999999988 8899999999999999999999999999999987 677889999999999999999999999
Q ss_pred HHHHHC
Q 046930 144 VRMESE 149 (965)
Q Consensus 144 ~~~~~~ 149 (965)
+++++.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999864
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=6.9e-06 Score=67.28 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=62.0
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 44 LPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
|.++.++..++.+|...|++++|+..|+++++.+ |.++.+|..++.+|...|++++|++.|+++++..+-.++....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 4567778888888888888888888888888888 6777888888888888888888888888888643112344443
Q ss_pred HHHHHHH
Q 046930 124 TSLVIAL 130 (965)
Q Consensus 124 ~~l~~~~ 130 (965)
..+...+
T Consensus 81 ~~l~~~l 87 (100)
T 3ma5_A 81 SELQDAK 87 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.5e-06 Score=70.21 Aligned_cols=96 Identities=6% Similarity=0.029 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc-----
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD----- 83 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----- 83 (965)
+...|..++..+ ...|++++|+..|++++... +.++.++..++.++...|++++|+..|+++++.+ |.+
T Consensus 3 ~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSL-FKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT---STAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---SSTTSHHH
T ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCccHHHH
Confidence 456788888887 89999999999999999876 5678889999999999999999999999999998 666
Q ss_pred -hHHHHHHHHHHHhcCChhhHHHHHHHH
Q 046930 84 -NFVCSSVVSGFCKIGKPELAIGFFENA 110 (965)
Q Consensus 84 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 110 (965)
..++..++.++...|+++.|+..|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 788999999999999999888777654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.6e-05 Score=62.45 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=76.0
Q ss_pred ccccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCch
Q 046930 5 SFPHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDN 84 (965)
Q Consensus 5 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (965)
+.|.+...|..++..+ ...|++++|+..|++++... +.+..++..++.++...|++++|+..|+++++.+ |.+.
T Consensus 4 ~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~ 77 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAY-YKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNA 77 (91)
T ss_dssp --CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred cccccHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCH
Confidence 3455667888888887 89999999999999999876 4577889999999999999999999999999998 7889
Q ss_pred HHHHHHHHHHHhcC
Q 046930 85 FVCSSVVSGFCKIG 98 (965)
Q Consensus 85 ~~~~~l~~~~~~~g 98 (965)
.++..++.++...|
T Consensus 78 ~~~~~l~~~~~~~g 91 (91)
T 1na3_A 78 EAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=7.7e-05 Score=65.26 Aligned_cols=111 Identities=14% Similarity=0.044 Sum_probs=96.1
Q ss_pred CCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh----cCCh
Q 046930 25 NDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK----IGKP 100 (965)
Q Consensus 25 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 100 (965)
+++++|+..|+++.+.. .+... ++..|...+.+++|++.|+++.+.+ ++.+++.++.+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccH
Confidence 46889999999988743 33333 8888888889999999999999875 56889999999998 8999
Q ss_pred hhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 046930 101 ELAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEG 150 (965)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 150 (965)
++|+.+|+++.+. .++.++..++.+|.. .+++++|..+|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999999999984 478899999999999 899999999999998864
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00011 Score=64.24 Aligned_cols=111 Identities=11% Similarity=-0.015 Sum_probs=75.7
Q ss_pred CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCCh
Q 046930 61 GNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRV 136 (965)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 136 (965)
+++++|++.|+++.+.+. +.. . ++..|...+.+++|+++|+++.+. .++.++..++..|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g~---~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE---MFG--C--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC---TTH--H--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCC---Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccH
Confidence 356777777777777662 222 2 677777777777777777777763 366677777777776 6777
Q ss_pred hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 046930 137 NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSK----EGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 205 (965)
++|+.+|++..+. .++.++..|...|.. .+++++|...|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~-----------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGL-----------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-----------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777777653 356666667777766 677777777777777654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=5.1e-05 Score=62.02 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=62.0
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
|.++.++..++.+|...|++++|+..|+++++.+ |.+..+|..++.+|...|++++|+..|+++++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999999987 677889999999999999999999999998864
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.2e-05 Score=85.23 Aligned_cols=101 Identities=11% Similarity=-0.004 Sum_probs=80.9
Q ss_pred cCCCHHHHHHHHHHHHhcCcchhhhhcccccccc-ccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchhhhhhhh
Q 046930 808 TKGRMEEARSILREMLQSKSVLELINRVDIEVES-ESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTDRAIETQ 886 (965)
Q Consensus 808 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (965)
..|++++|..+++++++..... ....+|.. .++.+|+..|..+|+|++|+.++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~----lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a------------------- 366 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSV----FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI------------------- 366 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTT----BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCc----cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-------------------
Confidence 4689999999999999853322 12245543 35777888899999999999999985
Q ss_pred hhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhccc
Q 046930 887 NKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLSSF 961 (965)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~ 961 (965)
+..+++++... +|+....++.++. |..+|+|++|+.+|++++++.
T Consensus 367 -----------------------------L~i~~~~lG~~-Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 367 -----------------------------IKPYSKHYPVY-SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp -----------------------------HHHHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHcCCC-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 23556677777 9999999988888 999999999999999999864
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=5.9e-05 Score=80.24 Aligned_cols=107 Identities=15% Similarity=0.050 Sum_probs=83.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccccccc-cccHHHHHHHhhhcCcHHHHHHHHHHHhhccCCCcccchh
Q 046930 802 LVKGLCTKGRMEEARSILREMLQSKSVLELINRVDIEVE-SESVLNFLISLCEQGSILEAIAILDEIGYMLFPTQRFGTD 880 (965)
Q Consensus 802 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 880 (965)
.+..+..+|++++|+.+++++++..... ....+|. ..++.+|+..|...|+|++|+.++++++
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~----lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L------------ 356 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSER----LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM------------ 356 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCC----CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCc----CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH------------
Confidence 3455668999999999999999864422 1123443 3356778888999999999999999852
Q ss_pred hhhhhhhhhhhhhccccccccccccccccCcccccccccccchhcccCCCchhhhHHHHh-hhccchHHHHHHHHHHHhc
Q 046930 881 RAIETQNKLDECESLNAVASVASLSNQQTDSDVLGRSNYHNVEKISKFHDFNFCYSKVAS-FCSKGELQKANKLMKEMLS 959 (965)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~ 959 (965)
..+++++... +|+....+..++. |..+|++++|+.+|+++++
T Consensus 357 ------------------------------------~i~~~~lg~~-Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 357 ------------------------------------EPYRIFFPGS-HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ------------------------------------HHHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------------HhHHHHcCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3556667677 8999888888888 9999999999999999987
Q ss_pred cc
Q 046930 960 SF 961 (965)
Q Consensus 960 ~~ 961 (965)
..
T Consensus 400 i~ 401 (429)
T 3qwp_A 400 IM 401 (429)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0018 Score=65.36 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHH
Q 046930 173 PDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVY 248 (965)
Q Consensus 173 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 248 (965)
.++.+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|+++...+ |...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence 456666666666666677777777777777764 566666666777777777777777777777663 344444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00042 Score=56.30 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=62.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchH-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNF-VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIAL 130 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (965)
..+..+...|++++|+..|+.+++.+ |.+.. ++..++.+|...|++++|++.|+++++.+ |.+..++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~----- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE---PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC---SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHH-----
Confidence 45667788888889999888888887 67777 88888888888899999999998888876 444444422
Q ss_pred HhcCChhHHHHHHHHHHH
Q 046930 131 CMLGRVNEVNELFVRMES 148 (965)
Q Consensus 131 ~~~~~~~~A~~~~~~~~~ 148 (965)
+.+.++...|++...
T Consensus 75 ---~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMY 89 (99)
T ss_dssp ---HHHHHHHHHHCCTTH
T ss_pred ---HHHHHHHHHHHHHhc
Confidence 345555666655443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00082 Score=53.28 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=53.1
Q ss_pred CCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 44 LPSSFTFCSLVYSFCSQGN---MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
+.++..+..++.++...++ .++|...|+++++.+ |.++.++..++..+...|+|++|+..|+++++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566777777777765544 678888888888888 7788888888888888888888888888888765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0014 Score=66.07 Aligned_cols=139 Identities=12% Similarity=0.082 Sum_probs=99.6
Q ss_pred ccccchhhHHHHHHHHH-Hcc---CCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCCh-----hHHHHHHHH
Q 046930 5 SFPHQSRFFDSLIQGFC-IKR---NDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS---QGNM-----SRAVEVLEL 72 (965)
Q Consensus 5 ~~p~~~~~~~~l~~~~~-~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~-----~~A~~~~~~ 72 (965)
..|.+..+|...+++.. ... .+..+|+.+|++++..+ |....++..++-+|.. .+.+ ......+..
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45778888888876553 222 33478999999999987 3445555544444431 1111 111112222
Q ss_pred H--HhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 73 M--SDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 73 ~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
. ...+ |.++.++..++..+...|++++|+..+++++..+ |+...|..++.++.-.|++++|.+.|+++...+
T Consensus 267 ~~a~~~~---~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPEL---NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGG---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccC---CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1 1233 7888999999998988999999999999999975 678888889999999999999999999999875
Q ss_pred C
Q 046930 151 L 151 (965)
Q Consensus 151 ~ 151 (965)
|
T Consensus 341 P 341 (372)
T 3ly7_A 341 P 341 (372)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00045 Score=73.24 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=68.2
Q ss_pred hcCCHHHHHHHHHHhhhC---CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHh-----CC-CCCChHH-HHHHH
Q 046930 738 KFGQLEEAFKFLHDLKIN---CLEPD----KFTVSAVINGFCQKGDMEGALGFFLDFNT-----KG-VSPDFLG-FLYLV 803 (965)
Q Consensus 738 ~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~~~-~~~l~ 803 (965)
..|++++|+.++++.++. -+.|+ ..++++|+.+|...|++++|+.+++++++ .| -.|+..+ +++|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888876642 12332 25788888899889999999988888765 23 3566555 99999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhc
Q 046930 804 KGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 804 ~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
..|..+|++++|..+|+++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999999984
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0019 Score=51.09 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=63.2
Q ss_pred CCchHHHHHHHHHHHhcCC---hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046930 81 PFDNFVCSSVVSGFCKIGK---PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
|.++..+..++.++...++ .++|...|+++++.+ |.++.+...++..+.+.|++++|+..|+++++..+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8899999999999976665 799999999999988 88899999999999999999999999999998754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00023 Score=57.95 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=68.9
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 046930 15 SLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSF-TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSG 93 (965)
Q Consensus 15 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (965)
..+..+ ...|++++|+..|++++... +.+.. .+..++.++...|++++|+..|+++++.+ |.+..++..
T Consensus 5 ~~a~~~-~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~---- 74 (99)
T 2kc7_A 5 KTIKEL-INQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN---PDSPALQAR---- 74 (99)
T ss_dssp HHHHHH-HHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSTHHHHH----
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHH----
Confidence 345555 68899999999999999876 45677 89999999999999999999999999998 677776633
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 046930 94 FCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~ 113 (965)
+.+.+|+..|+++...
T Consensus 75 ----~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 ----KMVMDILNFYNKDMYN 90 (99)
T ss_dssp ----HHHHHHHHHHCCTTHH
T ss_pred ----HHHHHHHHHHHHHhcc
Confidence 5566777777776654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00097 Score=70.87 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=70.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCC---CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC-----C-CCCChHH-
Q 046930 733 IDGYCKFGQLEEAFKFLHDLKINC---LEPD----KFTVSAVINGFCQKGDMEGALGFFLDFNTK-----G-VSPDFLG- 798 (965)
Q Consensus 733 ~~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~~- 798 (965)
+.-+...|++++|+.+++++++.. +.|+ ..++++|+.+|...|++++|+.+++++++. | -.|+..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556788888888888877541 2232 246788888888889999998888887642 2 3455555
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 799 FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 799 ~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
+++|+..|..+|++++|..+|+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999984
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.019 Score=55.31 Aligned_cols=107 Identities=17% Similarity=0.083 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHhhhCCCCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHHhHhCCCCCC--hHHHHHHHHHHhc-C
Q 046930 741 QLEEAFKFLHDLKINCLEPD---KFTVSAVINGFCQK-----GDMEGALGFFLDFNTKGVSPD--FLGFLYLVKGLCT-K 809 (965)
Q Consensus 741 ~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~-~ 809 (965)
...+|..+++++++ +.|+ ...|..|+..|... |+.++|.+.|+++++ +.|+ ..++...+..+++ .
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhc
Confidence 35788999999998 5886 46899999999884 999999999999977 7774 5668889999988 5
Q ss_pred CCHHHHHHHHHHHHhcCcchhhhhccccccccccHHHHHHHhhhcCcHHHHHHHHHHH
Q 046930 810 GRMEEARSILREMLQSKSVLELINRVDIEVESESVLNFLISLCEQGSILEAIAILDEI 867 (965)
Q Consensus 810 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 867 (965)
|+.++|...++++++. .|....-..+. ..++-++|..+++++
T Consensus 254 gd~~~a~~~L~kAL~a------------~p~~~P~~~la----n~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 254 NNRAGFDEALDRALAI------------DPESVPHNKLL----VILSQKRARWLKAHV 295 (301)
T ss_dssp TCHHHHHHHHHHHHHC------------CGGGCSSCHHH----HHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHcC------------CCCCCCChhHH----HHHHHHHHHHHHHHh
Confidence 9999999999999984 33321111222 345667777777654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0025 Score=54.87 Aligned_cols=91 Identities=10% Similarity=0.019 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHhcCChhh
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQG---NMSRAVEVLELMSDENVKYP-FDNFVCSSVVSGFCKIGKPEL 102 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 102 (965)
...+.+.|.+.+... +++..+...++-++.+.+ ++++++.+|+...+.+. | .+.++++.++-++.+.|+|++
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~--p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS--KEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--ccchHHHHHHHHHHHHHccCHHH
Confidence 455677788776644 478888889998999988 67799999999999872 3 468899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHhhH
Q 046930 103 AIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~ 123 (965)
|+++++++++.. |.+..+.
T Consensus 90 A~~y~~~lL~ie--P~n~QA~ 108 (152)
T 1pc2_A 90 ALKYVRGLLQTE--PQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHhcC--CCCHHHH
Confidence 999999999976 4454443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0028 Score=54.51 Aligned_cols=82 Identities=21% Similarity=0.143 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHhHhCCCCC-C-hHHHHHHHHHHhcCCCHHHH
Q 046930 741 QLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKG---DMEGALGFFLDFNTKGVSP-D-FLGFLYLVKGLCTKGRMEEA 815 (965)
Q Consensus 741 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~eA 815 (965)
.+..+.+.|.+....| .++..+...+++++++.+ ++++++.++++..+.+ .| + ...++.|+.++++.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3466777787777655 467888888999999888 6779999999987743 36 2 34477899999999999999
Q ss_pred HHHHHHHHh
Q 046930 816 RSILREMLQ 824 (965)
Q Consensus 816 ~~~~~~~~~ 824 (965)
.++++++++
T Consensus 91 ~~y~~~lL~ 99 (152)
T 1pc2_A 91 LKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999998
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0025 Score=52.07 Aligned_cols=78 Identities=8% Similarity=-0.084 Sum_probs=54.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV----KYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV 120 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 120 (965)
.++..+..++..+...|++..|+..|+.+++... ..+....++..++.++.+.|+++.|+..++++++.. |.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~--P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCH
Confidence 3556677777777777888888888877766421 014566778888888888888888888888888765 4454
Q ss_pred hhHH
Q 046930 121 VSYT 124 (965)
Q Consensus 121 ~~~~ 124 (965)
.+..
T Consensus 81 ~~~~ 84 (104)
T 2v5f_A 81 RANG 84 (104)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0046 Score=50.44 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=66.5
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCC-----CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHG-----TLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF 82 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (965)
.+..-|+.|+..+ .+.|+|..|+..|+.+++... -.+...++..++.++.+.|+++.|+..++.+++.. |.
T Consensus 3 Lsa~dc~~lG~~~-~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~---P~ 78 (104)
T 2v5f_A 3 LTAEDCFELGKVA-YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD---PE 78 (104)
T ss_dssp CCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT
T ss_pred CCHHHHHHHHHHH-HHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CC
Confidence 4566788899987 799999999999999997531 13456788999999999999999999999999998 77
Q ss_pred chHHHHHHH
Q 046930 83 DNFVCSSVV 91 (965)
Q Consensus 83 ~~~~~~~l~ 91 (965)
+..+...+.
T Consensus 79 ~~~~~~n~~ 87 (104)
T 2v5f_A 79 HQRANGNLK 87 (104)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHhhHH
Confidence 777765554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.058 Score=52.01 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CCHhH
Q 046930 191 IEKAVGILNKMIEDRLRP-NLITYTAIIFGFCKK-----GKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR-GDLDC 263 (965)
Q Consensus 191 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 263 (965)
...|...++++++..+.- +...|..++..|.+. |+.++|.+.|++.++.+...+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 567888888888863321 256888999999985 99999999999999987444577888888888884 99999
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHH
Q 046930 264 AFRLLEDMEKKGIK--PSIVTYNTI 286 (965)
Q Consensus 264 A~~~~~~~~~~g~~--~~~~~~~~l 286 (965)
+.+.+++.+..... |+....+.+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999998766 665544443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.019 Score=48.39 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=82.9
Q ss_pred cccchhhHHHHHHHHHHccCCc------hHHHHHHHHHHHhCCCCCCHH--------hHHHHHHHHHhcCChhHHHHHHH
Q 046930 6 FPHQSRFFDSLIQGFCIKRNDP------EKALLVLKDCLRNHGTLPSSF--------TFCSLVYSFCSQGNMSRAVEVLE 71 (965)
Q Consensus 6 ~p~~~~~~~~l~~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~ 71 (965)
-|++...|...+... .++|++ +.-+..|.+++... ||+.. .|...+ .+...++.++|.++|+
T Consensus 9 ~p~~yd~W~~yl~ll-E~~g~p~~d~~l~rlrd~YerAia~~--Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 9 MANNPEDWLSLLLKL-EKNSVPLSDALLNKLIGRYSQAIEAL--PPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQ 84 (161)
T ss_dssp -CCSHHHHHHHHHHH-HHHTCSCCHHHHHHHHHHHHHHHHHS--CGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHH
T ss_pred CCCCHHHHHHHHHHH-HHcCCCchhhHHHHHHHHHHHHHHcC--CccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHH
Confidence 378888999999887 677999 88888999988855 45321 122222 1234578899999999
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHH
Q 046930 72 LMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVI 128 (965)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (965)
.++..+. .-+.+|...++.-.++|+...|.+++.+++..+ +.........++
T Consensus 85 ~a~~~hK---kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~--~k~~~~le~a~~ 136 (161)
T 4h7y_A 85 MARANCK---KFAFVHISFAQFELSQGNVKKSKQLLQKAVERG--AVPLEMLEIALR 136 (161)
T ss_dssp HHHHHCT---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBCHHHHHHHHH
T ss_pred HHHHHhH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--CCcHHHHHHHHH
Confidence 8887753 348888888888889999999999999998865 445555554444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.79 E-value=1.2 Score=51.24 Aligned_cols=126 Identities=14% Similarity=0.030 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHH--HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 046930 626 TIVAALCREGYVNKALDLCAFAKNKGITVNIV--TYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCK 703 (965)
Q Consensus 626 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 703 (965)
+++-++...|+.+.+..+.+.+... ..|... .-..++-+|+..|+......++..+.+.. ..+..-...+.-++..
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhc
Confidence 3344444566666666666666543 121221 11234455666677655555666666531 1222222222233334
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHhhh
Q 046930 704 EGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQL-EEAFKFLHDLKI 754 (965)
Q Consensus 704 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 754 (965)
.|+.+.+..+++.+.+.+ .|.+..--.++-+....|.. .+|+..+..+..
T Consensus 607 ~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 607 LRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 555555555555554432 33333323333333333332 566777777764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.74 E-value=1.5e-05 Score=81.08 Aligned_cols=284 Identities=13% Similarity=0.092 Sum_probs=182.5
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHH
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVC 87 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (965)
+.+.+|..|+.+. .+.++..+|+..|-+ ..|+..|..++.+..+.|++++-++.+..+.+.- ..+.+=
T Consensus 52 n~p~VWs~LgkAq-L~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~----ke~~ID 119 (624)
T 3lvg_A 52 NEPAVWSQLAKAQ-LQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVE 119 (624)
T ss_dssp CCCCCSSSHHHHT-TTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC----CSTTTT
T ss_pred CCccHHHHHHHHH-HccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----cccccH
Confidence 4556888888887 788888888765544 3456677788999999999999999998777653 344566
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh----
Q 046930 88 SSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC---- 163 (965)
Q Consensus 88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~---- 163 (965)
+.++-+|.+.++..+-.+++. .||..-...++.-|...|.++.|.-+|..+....- ..+++++
T Consensus 120 teLi~ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak-----LAstLV~L~~y 186 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR-----LASTLVHLGEY 186 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT-----TSSSSSSCSGG
T ss_pred HHHHHHHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH-----HHHHHHHHHHH
Confidence 788999999999877544432 46766677788888888999888888765532211 0111111
Q ss_pred -hhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 046930 164 -GQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV 242 (965)
Q Consensus 164 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 242 (965)
+.+.......++.+|-.+-.+|...+.+.-|.-+--.++-. | .....++..|-..|-+++-+.+++.-.... .
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglE-r 260 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLE-R 260 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence 11222233456778888888888888887776665555432 1 223445666778888888888888776432 4
Q ss_pred CCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHhcCCcchHHHH-------------
Q 046930 243 ADEFVYATLIDGVCRRGDLDCAFRLLEDMEKK-GIKP------SIVTYNTIINGLCKVGRTSDAEEV------------- 302 (965)
Q Consensus 243 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~------~~~~~~~l~~~~~~~g~~~~a~~~------------- 302 (965)
.....++.|.-.|++- ++++..+.++...++ +++- ....|..++-.|.+-.+++.|...
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHH
Confidence 4566777777777663 455444444333222 1111 223577777777777777777554
Q ss_pred HcCC---CCCHHHHHHHHHHhhhc
Q 046930 303 SKGI---LGDVVTYSTLLHGYIEE 323 (965)
Q Consensus 303 ~~~~---~~~~~~~~~l~~~~~~~ 323 (965)
|+.+ ..|...+...+..|...
T Consensus 340 Fkdii~KVaN~EiyYKAi~FYL~e 363 (624)
T 3lvg_A 340 FKDIITKVANVELYYRAIQFYLEF 363 (624)
T ss_dssp GTTTGGGCSCSHHHHHHHHHHTTS
T ss_pred HHHHHHHcchHHHHHHHHHHHHHh
Confidence 2222 24555666666666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.11 Score=61.48 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=25.1
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHHHHHHHHH
Q 046930 667 CRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDAKKLFDRM 717 (965)
Q Consensus 667 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (965)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.++|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4456666665554322 23455666666666666666666666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.043 Score=64.98 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=97.3
Q ss_pred HHhcCCHHHHHH-HHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHH
Q 046930 631 LCREGYVNKALD-LCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLD 709 (965)
Q Consensus 631 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 709 (965)
....+++++|.+ ++.. ++ +......++..+.+.|..++|+++.+. |. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHH
Confidence 345678888866 4421 11 122336777888888998888876632 11 11223457899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 046930 710 AKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFFLDFNT 789 (965)
Q Consensus 710 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (965)
|.++.+.+ .+...|..++..+.+.|+++.|+..|.++.. |..+...+...|+.+...++.+.+..
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 99986532 4678999999999999999999999998753 23344445556666665555554443
Q ss_pred CCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 790 KGVSPDFLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 790 ~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.| + +..-..++...|++++|+++|.++.+
T Consensus 736 ~~---~---~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 736 TG---K---FNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp TT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred cC---c---hHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 22 1 12222235556777777776655543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.033 Score=45.96 Aligned_cols=84 Identities=19% Similarity=0.105 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHHhHhCCCCCC-h-HHHHHHHHHHhcCCCHH
Q 046930 739 FGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEG---ALGFFLDFNTKGVSPD-F-LGFLYLVKGLCTKGRME 813 (965)
Q Consensus 739 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~ 813 (965)
...+..+.+.|.+....| .|+..+--.+++++.+..+..+ ++.+++.+...+ .|+ . ...+.|+.++++.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334556666777666544 4777777778888888876665 899999886532 352 2 23777999999999999
Q ss_pred HHHHHHHHHHh
Q 046930 814 EARSILREMLQ 824 (965)
Q Consensus 814 eA~~~~~~~~~ 824 (965)
+|..+++.+++
T Consensus 92 ~A~~~~~~lL~ 102 (126)
T 1nzn_A 92 KALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.061 Score=44.37 Aligned_cols=92 Identities=11% Similarity=-0.003 Sum_probs=72.1
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH---HHHHHHHHHhcCCCCC-CchHHHHHHHHHHHhcCChh
Q 046930 26 DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSR---AVEVLELMSDENVKYP-FDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 101 (965)
....+.+.|....... +++..+-..++-++.+..+... ++.+++.....+. | ...+.++.++-++.+.|+|+
T Consensus 16 ~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--KEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHhhhHH
Confidence 4456677777766644 4788888888888888887666 9999999888762 3 57788899999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCHhhH
Q 046930 102 LAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+|++.++.+++.. |.+..+.
T Consensus 92 ~A~~~~~~lL~~e--P~n~QA~ 111 (126)
T 1nzn_A 92 KALKYVRGLLQTE--PQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHhC--CCCHHHH
Confidence 9999999999976 5555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.11 Score=43.90 Aligned_cols=107 Identities=13% Similarity=0.027 Sum_probs=77.9
Q ss_pred CCCHHhHHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCCCCchHH-------HHHHHHHHHhcCChhhHHHHHHHH
Q 046930 44 LPSSFTFCSLVYSFCSQGNM------SRAVEVLELMSDENVKYPFDNFV-------CSSVVSGFCKIGKPELAIGFFENA 110 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~ 110 (965)
+.++.+|-..+...-+.|+. ++.+++|+++...-+ |..... |...+ .+...++.++|.+.|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P--p~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP--PDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC--GGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC--ccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 45666777777777777887 788889998888663 322222 22222 224458999999999999
Q ss_pred HHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccch
Q 046930 111 ISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155 (965)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (965)
++.. ..=...|...++.-.+.|+..+|.+++.+.+..++.|..
T Consensus 87 ~~~h--KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANC--KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHC--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHh--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 8763 333678888888889999999999999999998775543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.039 Score=47.80 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-------HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-------SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYP--- 81 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 81 (965)
.+...+..+ ...|.|+.|+-+...++...+..++ ..++..++.++...|+|.+|...|+++++.....+
T Consensus 22 ~l~dqik~L-~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 22 NVIDHVRDM-AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHH-HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 566667776 7899999999888876654332333 23678889999999999999999999765321111
Q ss_pred -------------------CchHHHHHHHHHHHhcCChhhHHHHHHHH
Q 046930 82 -------------------FDNFVCSSVVSGFCKIGKPELAIGFFENA 110 (965)
Q Consensus 82 -------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 110 (965)
.+.++-+.++.+|.+.|++++|+..++.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 12245555666666666666666666554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=3.3 Score=45.81 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 046930 325 NVNGILETKQRLEEAGIQMDIVMCN----ILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEAL 400 (965)
Q Consensus 325 ~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 400 (965)
+.+.|...+....... ..+..... .++..+...+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 5566666666665433 22322222 22222233442345555555544332 33333333444455778888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046930 401 EIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNE 442 (965)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 442 (965)
..|..+............-+++++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888877664444566677778888888888888888888864
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.62 E-value=3.5e-05 Score=78.47 Aligned_cols=239 Identities=12% Similarity=0.113 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046930 174 DTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLID 253 (965)
Q Consensus 174 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 253 (965)
.+.+|..|+.+..+.++..+|++.|-+.. |+..|..++.+..+.|.+++-+..+....+.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 46678889999888888888877664432 56678888888889999999888887777653 34455567888
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcCCC-------------------------C
Q 046930 254 GVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKGIL-------------------------G 308 (965)
Q Consensus 254 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------------------------~ 308 (965)
+|++.++..+-++.+ . .|+......++.-|...|.++.|.-+|..++ .
T Consensus 125 ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899988876543332 2 2555566677888888888888877654332 3
Q ss_pred CHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHH
Q 046930 309 DVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMID 388 (965)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (965)
++.+|..+-.+|...+.+.-|.-+--.++-. +| -...++..|-..|.+++-+.+++.-.... ......++.|+-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 5667777777777777766554432222211 11 01123444566777777777776665322 345566777776
Q ss_pred HHHHcCCHHHHHHHHHHHHhc-CCC-------CHHHHHHHHHHHHhcCChHHHH
Q 046930 389 GYCKLGRIEEALEIFDELRRM-SIS-------SVACYNCIINGLCKSGMVDMAT 434 (965)
Q Consensus 389 ~~~~~~~~~~A~~~~~~~~~~-~~~-------~~~~~~~l~~~~~~~g~~~~A~ 434 (965)
.|.+-. .++-.+.++..-+. +.| ....|..+...|.+-.+++.|.
T Consensus 272 LYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 666542 33333332221111 111 2234667777777777776654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.46 Score=42.05 Aligned_cols=101 Identities=8% Similarity=0.131 Sum_probs=72.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN 209 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (965)
....|+++.|.++.+.+ .+...|..|.......|+++-|.++|.+.. |
T Consensus 15 AL~lg~l~~A~e~a~~l--------------------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D 62 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--------------------------NDSITWERLIQEALAQGNASLAEMIYQTQH------S 62 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C
T ss_pred HHhcCCHHHHHHHHHHh--------------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C
Confidence 45688888888887655 367788999999999999999999888874 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 046930 210 LITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDM 271 (965)
Q Consensus 210 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 271 (965)
+..+.-.|.-.|+.+.-.++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 63 ---~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 63 ---FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 3445555666788877776666666554 2344445566678888888887543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.14 E-value=1.6 Score=38.59 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=24.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 046930 632 CREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSL 682 (965)
Q Consensus 632 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 682 (965)
.+.|+++.|.++.+.+ .+...|..|+......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455555555554443 14455555555555555555555555543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.11 Score=44.98 Aligned_cols=101 Identities=11% Similarity=0.045 Sum_probs=74.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC------chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC------
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF------DNFVCSSVVSGFCKIGKPELAIGFFENAISLGA------ 115 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 115 (965)
.++..-++.+...|.|+.|+-+.+.++......|. ...++..+++++...|+|..|...|++++....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34666677788999999999999986664311011 124778899999999999999999999864311
Q ss_pred -----------------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 116 -----------------LKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 116 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
.+.+...-..+..+|.+.+++++|+.+++.+..
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111224667788999999999999999887643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.99 E-value=0.83 Score=37.60 Aligned_cols=85 Identities=16% Similarity=0.036 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHH
Q 046930 187 KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFR 266 (965)
Q Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 266 (965)
..|+.......+-.+- .+.......+..+..+|+.+.-.+++..+... .+|++.....+..+|.+.|+..+|.+
T Consensus 73 ~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHH
Confidence 3566666666665542 24556667778888888888888888886553 37788888888899999999999999
Q ss_pred HHHHHHHCCCC
Q 046930 267 LLEDMEKKGIK 277 (965)
Q Consensus 267 ~~~~~~~~g~~ 277 (965)
++.+.-++|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 99988888764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.78 E-value=2.8 Score=44.45 Aligned_cols=97 Identities=18% Similarity=0.090 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHh----CCCCCChHH-
Q 046930 729 YNSFIDGYCKFGQLEEAFKFLHDLKIN--CLEPD---KFTVSAVINGFCQKGDMEGALGFFLDFNT----KGVSPDFLG- 798 (965)
Q Consensus 729 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~- 798 (965)
...|+..+...|++.+|..++..+... |..+. ...+..-+..|...+++.+|..+++++.. ....|+...
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356777888888888888888776532 21111 13555667777788888888888777632 122233222
Q ss_pred -HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046930 799 -FLYLVKGLCTKGRMEEARSILREMLQS 825 (965)
Q Consensus 799 -~~~l~~~~~~~g~~~eA~~~~~~~~~~ 825 (965)
+...+..+...+++.+|...|.++.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455666677788888888888777664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.39 E-value=1.6 Score=36.68 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=60.8
Q ss_pred CCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC
Q 046930 43 TLPSSFTFCSLVYSFCSQGN---MSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN 119 (965)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 119 (965)
..++..+...++-++.++.+ ..+++.+++.....++ ....+.++.++-++.+.|+|++|+++.+.+++.. |.|
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e--P~n 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RNN 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--CCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCc
Confidence 36788888888888888765 4578999999888764 4677888999999999999999999999999966 445
Q ss_pred Hh
Q 046930 120 VV 121 (965)
Q Consensus 120 ~~ 121 (965)
..
T Consensus 111 ~Q 112 (144)
T 1y8m_A 111 KQ 112 (144)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.87 E-value=0.68 Score=38.33 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=49.7
Q ss_pred CCCChhHHHHHHHHHHhcCC---HHHHHHHHHHhHhCCCCCC--hHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 757 LEPDKFTVSAVINGFCQKGD---MEGALGFFLDFNTKGVSPD--FLGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 757 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
-.|+..+--.+++++.+..+ ..+++.+++++... .|. ...++.|+.++++.|++++|.++.+.+++
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 36666666677778876654 45688888888653 353 23377799999999999999999999998
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.58 E-value=2.2 Score=35.87 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=49.2
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHHhHhCCCCCC-h-HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 758 EPDKFTVSAVINGFCQKGD---MEGALGFFLDFNTKGVSPD-F-LGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 758 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.|+..+--.+++++.+..+ ..+++.+++.+.. -.|+ . ..++.|+.++++.|++++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5666666677788877654 4578888888865 2443 2 3366799999999999999999999998
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.21 E-value=1.4 Score=36.45 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=60.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC
Q 046930 43 TLPSSFTFCSLVYSFCSQGNM---SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN 119 (965)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 119 (965)
-.|++.+-..++-++.++.+. .+++.+++.+.+.++ ....+.++.++-++.+.|+|++|+++.+.+++.. |.|
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~--~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e--P~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--TTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC--CCC
Confidence 357778888888788877654 578999999888763 3567889999999999999999999999999865 445
Q ss_pred Hhh
Q 046930 120 VVS 122 (965)
Q Consensus 120 ~~~ 122 (965)
..+
T Consensus 112 ~QA 114 (134)
T 3o48_A 112 KQV 114 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.00 E-value=10 Score=40.14 Aligned_cols=164 Identities=10% Similarity=0.027 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--CCccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHh----CCCCCC--Hh
Q 046930 624 YSTIVAALCREGYVNKALDLCAFAKNK--GITVN---IVTYNTVIHSLCRQGCFVEAFRLFDSLER----IDMVPS--EV 692 (965)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~--~~ 692 (965)
...|+..+...|++.+|..++..+... +.... ...+...++.|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356777888888888888888887643 21111 23455667888888999999888887642 222222 23
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHH
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVLK-GFKPSTRIYN----SFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAV 767 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 767 (965)
.+...+..+...+++.+|.+.|.++... ....+...+. .++.+..-.+...+--.+..+......-++...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 4556667777888888888888877653 1111222221 1111111122111222222222221112345677778
Q ss_pred HHHHHhc--CCHHHHHHHHHHh
Q 046930 768 INGFCQK--GDMEGALGFFLDF 787 (965)
Q Consensus 768 ~~~~~~~--g~~~~A~~~~~~~ 787 (965)
+.+|... .+++...+.|...
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHhchHhhhHHHHHHHHHH
Confidence 8887543 4567777766654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.68 E-value=5 Score=33.17 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 046930 624 YSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDM 687 (965)
Q Consensus 624 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 687 (965)
....++.+...|+-|+-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455666667777777777665432 355666667777777777777777777777777664
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.31 E-value=4.6 Score=41.49 Aligned_cols=132 Identities=11% Similarity=0.009 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-Ccc---cHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhCCCCCCHhhH-
Q 046930 621 VVDYSTIVAALCREGYVNKALDLCAFAKNKG-ITV---NIVTYNTVIHSLCRQ-GCFVEAFRLFDSLERIDMVPSEVSY- 694 (965)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~- 694 (965)
..+...|+..|.+.|+.++..+++.....-= .-| .....+.++..+... +..+.-.++..+.++..- ....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3455667777777777777777766554320 000 112234455555442 223333333333333110 111122
Q ss_pred -----HHHHHHHHccCChHHHHHHHHHHHHC--CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 046930 695 -----ATLIYNLCKEGQLLDAKKLFDRMVLK--GFKPS---TRIYNSFIDGYCKFGQLEEAFKFLHDLK 753 (965)
Q Consensus 695 -----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 753 (965)
..|+..|...|++.+|.+++.++.+. ..... ..++-.-+..|...|++.++...+.+..
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 13455566666666666666665542 11111 2233344555555666666665555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.08 E-value=7.3 Score=47.35 Aligned_cols=121 Identities=7% Similarity=-0.009 Sum_probs=81.4
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--------------------CC
Q 046930 21 CIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV--------------------KY 80 (965)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------------~~ 80 (965)
|...+.++.|..+... + +.++.....+++++...|++++|..+|.++...-. ..
T Consensus 822 l~~~~~~~~~~~l~~~-~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 822 LFLFKQYNACMQLIGW-L-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHSCTTHHHHHHHH-S-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHhhhHHHHHHHhhh-c-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 3566777766554433 2 34555556778889999999999999987532110 00
Q ss_pred CCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 81 PFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV----VSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
..-+.-|..++..+.+.|.++.++++-..+++..+ +.+. ..|..+...+...|++++|...+-.+..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 11223466777888888899999988888887542 1221 2577888888889999999888877654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.79 E-value=2.7 Score=47.37 Aligned_cols=31 Identities=3% Similarity=0.029 Sum_probs=24.1
Q ss_pred CchhhhHHHHh-hhccchHHHHHHHHHHHhcc
Q 046930 930 DFNFCYSKVAS-FCSKGELQKANKLMKEMLSS 960 (965)
Q Consensus 930 ~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~ 960 (965)
.....+-+++- ..+.++++||++.|+..|..
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~ 642 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA 642 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34556666666 77889999999999998863
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.84 E-value=3.5 Score=39.16 Aligned_cols=56 Identities=27% Similarity=0.245 Sum_probs=37.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 56 SFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.+.+.|++++|++.....++.+ |.+...-..+...+|-.|+++.|.+.++.+.+.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4556666667776666666666 6666666666666777777777766666666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=2 Score=44.72 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=68.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCC-----c--------------hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC
Q 046930 59 SQGNMSRAVEVLELMSDENVKYPF-----D--------------NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN 119 (965)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~-----~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 119 (965)
..|+.+.|...+..++......+. . ..+...++..+...|++++|+..++.++..+ |-+
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~ 204 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH--PYR 204 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence 357888888888888775321010 0 0233456677888999999999999999877 677
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 120 VVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
-..|..++.++.+.|+..+|+..|+++.+
T Consensus 205 E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 205 EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999875
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.71 E-value=2 Score=48.45 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=49.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 046930 387 IDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIEL 440 (965)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 440 (965)
+..+...|+++-|+.+-+++....|.+-.+|..|+.+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 555778899999999999999999999999999999999999999999888775
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.19 E-value=43 Score=38.70 Aligned_cols=324 Identities=11% Similarity=0.019 Sum_probs=147.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCCCHhHHHH
Q 046930 178 YTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG-------LVADEFVYAT 250 (965)
Q Consensus 178 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~ 250 (965)
|..++.+..+.++.+.+.++|..+... .+...-..+.-.+.+.++-.--..+.+.+.... +-.+..+-..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~~~~~L 309 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNILSGLPTCDY 309 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHHhCCCChHHH
Confidence 555666777888999999999998742 243332333333444333222222222221100 0111111111
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCC-CH--HHHHHHHHHHHhcCCcchHHH-----HHcCCCCCHHHHHH-HHHHhh
Q 046930 251 LIDGVCRRGDLDCAFRLLEDMEKKGIKP-SI--VTYNTIINGLCKVGRTSDAEE-----VSKGILGDVVTYST-LLHGYI 321 (965)
Q Consensus 251 l~~~~~~~g~~~~A~~~~~~~~~~g~~~-~~--~~~~~l~~~~~~~g~~~~a~~-----~~~~~~~~~~~~~~-l~~~~~ 321 (965)
-...+.+.+..+ ..+++.++.. +.+ +. .+-..+.+++...|-..+..- .+.+. .+..-+.+ ..-+..
T Consensus 310 yl~FL~~~n~~d--~~~l~~~K~~-ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~~~~k~sA~aSLGlI 385 (963)
T 4ady_A 310 YNTFLLNNKNID--IGLLNKSKSS-LDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA-QNWAKFTATASLGVI 385 (963)
T ss_dssp HHHHHHHHCCCC--HHHHHHHHHH-SCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC-CTHHHHHHHHHHHHH
T ss_pred HHHHHHhccccc--hhhHHHHHhh-hcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc-chHHHHHHHHHhhhh
Confidence 122222222221 1222223221 111 11 133455667777775443311 11111 12112222 223456
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHchhCCC-------cccHHHHHHH--HHHH
Q 046930 322 EEDNVNGILETKQRLEEAGIQMDIV--MCNILIKALFMVGALEDARALYQAMPEMNL-------VANSVTYSTM--IDGY 390 (965)
Q Consensus 322 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l--~~~~ 390 (965)
..++.++++..+...+..+...+.. .-..+.-+....|..+++..++...+...- .+....-..+ +.++
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 6788888887776655421112332 333344445556665677777776654210 0112222233 3333
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH--HcCChh
Q 046930 391 CKLGRIEEALEIFDELRRMSISSV--ACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATF--AKGGVG 466 (965)
Q Consensus 391 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~ 466 (965)
...++ +++...+..+........ .+-..++..+...|+.+....++..+.+. .+....+.+..++. ..|+.+
T Consensus 466 ~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 466 MGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp TTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGG
T ss_pred cCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChH
Confidence 33444 455566666555422211 23345555666788877777777776653 23333333333333 456666
Q ss_pred hHHHHHHHHHhcc-cccchhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 046930 467 GVLNFVYRIENLR-SEIYDIICNDVISFLCKRGSSEVASELYMFMRK 512 (965)
Q Consensus 467 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 512 (965)
.+..+++.+.... +......-..++-+|+..|+.....+++..+..
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 6666666655432 111112222344455566665555555555443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.99 E-value=8.7 Score=46.70 Aligned_cols=168 Identities=8% Similarity=0.064 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHh-hh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWIC-GQ 165 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~-~~ 165 (965)
...++..+...+.++-|.++... .+.++..-..++.++...|++++|.++|+++-. ++..+.......-. ..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccc
Confidence 34566677788888887765433 256666667888999999999999999988642 22111111000000 00
Q ss_pred hhh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 166 MVD--KGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNL----ITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 166 ~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
+.. .....-...|..++..+-+.+.++.+.++-..+++...+.+. ..|..+...+...|++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 000 011123456777777888888888888887777664322222 24677778888888888888888777655
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHhH
Q 046930 240 GLVADEFVYATLIDGVCRRGDLDC 263 (965)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~g~~~~ 263 (965)
.. -......|+...+..|..+.
T Consensus 968 ~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 968 PL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HH--HHHHHHHHHHHHHhCCChhh
Confidence 32 34556666666666665443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.41 E-value=6.5 Score=41.45 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=33.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 046930 693 SYATLIYNLCKEGQLLDAKKLFDRMVLK--GFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLK 753 (965)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 753 (965)
+...++..|.+.|++++|.++|.++... +...-...+...+.++...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455556666666666666666666553 212223445555556666666666666665543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.15 E-value=4.4 Score=42.78 Aligned_cols=101 Identities=12% Similarity=-0.043 Sum_probs=74.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhh----H
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVS----Y 123 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~ 123 (965)
.+...++..|.+.|+++.|.++|.++............++..+++.+...+++..+...+.++...-.-.++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 456788999999999999999999988865433566788889999999999999999999998653211223222 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 124 TSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 124 ~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
...+..+...+++.+|.+.|-.+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2333445667899999988877654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.72 E-value=5.6 Score=41.24 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHhHH
Q 046930 382 TYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNE-----KGLSLYVGMHK 453 (965)
Q Consensus 382 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 453 (965)
+...++..+...|++++|+..+..+...+|-+...|..++.++...|+..+|++.|+.... .|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445677788899999999999999988999999999999999999999999999988654 58888876543
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.39 E-value=4.7 Score=42.69 Aligned_cols=138 Identities=11% Similarity=0.069 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHh-----CC----CCCCHHhHHHHHHHHHhcCChhHH----------HHHHHH
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRN-----HG----TLPSSFTFCSLVYSFCSQGNMSRA----------VEVLEL 72 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-----~~----~~~~~~~~~~l~~~~~~~g~~~~A----------~~~~~~ 72 (965)
.++.|...+..+++++++|..+-...+.. .. ..-.+.+|.....++-..|+.... ...+-.
T Consensus 137 y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~ 216 (523)
T 4b4t_S 137 FMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMK 216 (523)
T ss_dssp ------------------------------------------------------------------CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHH
Confidence 44455555667889999887765543310 00 011334455555555555655442 112222
Q ss_pred HHh-----cCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh---hHHHHHHHHHhcCChhHHHHHHH
Q 046930 73 MSD-----ENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV---SYTSLVIALCMLGRVNEVNELFV 144 (965)
Q Consensus 73 ~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~ 144 (965)
..+ .+. ......++.+++.|...+.++.|..+..+..--....++.. -+..+++.+.-.+++.+|.+.+.
T Consensus 217 ~~rta~lr~D~--~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 217 FLKIASLKHDN--ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp HHHHCCSCSSS--CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcccCc--chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 222 222 44567899999999999999999999999852100011212 23467888999999999999999
Q ss_pred HHHHCCC
Q 046930 145 RMESEGL 151 (965)
Q Consensus 145 ~~~~~~~ 151 (965)
.+....+
T Consensus 295 ~A~rkap 301 (523)
T 4b4t_S 295 AAIRKAP 301 (523)
T ss_dssp HHTSSCS
T ss_pred HHHHhCC
Confidence 9887654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.13 E-value=14 Score=28.70 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046930 360 ALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCII 421 (965)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (965)
+.-+..+-++.+...++.|++.+....+.+|-+.+++..|+++|+.+.........+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 45566677777777788888888888888888888888888888888776433334455443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.56 E-value=5 Score=38.11 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=41.9
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV 78 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 78 (965)
.+.|++++|++.....++.. |.|...-..+++.++-.|+|++|.+-++...+.++
T Consensus 8 l~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 57788888888888877765 55666666777778888888888888888877773
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 965 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 9e-07
Identities = 51/386 (13%), Positives = 111/386 (28%), Gaps = 27/386 (6%)
Query: 60 QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN 119
G+ A + + + SS+ + + + + F AI P
Sbjct: 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSI---HFQCRRLDRSAHFSTLAI---KQNPL 65
Query: 120 VV-SYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSY 178
+ +Y++L G++ E E + F + +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 179 TILLDGFSKEGTIEKAVGILNKMIEDRLRP------------NLITYTAIIFGFCKKGKL 226
+ L +L + + ++ + F +G++
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 227 EEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTI 286
A F+K L Y L + + D A ++ + +
Sbjct: 186 WLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-VHGNL 243
Query: 287 INGLCKVGRTSDAEEVSKGIL----GDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQ 342
+ G A + + + Y L + E+ +V +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR-LCP 302
Query: 343 MDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEI 402
N L G +E+A LY+ E+ + +S + + G+++EAL
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMH 361
Query: 403 FDELRRMSISSVACYNCIINGLCKSG 428
+ E R+S + Y+ + N L +
Sbjct: 362 YKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 0.001
Identities = 47/408 (11%), Positives = 113/408 (27%), Gaps = 46/408 (11%)
Query: 351 LIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMS 410
L + G E A + N+ + + + R++ + + +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 411 ISSVACYNCIINGLCKSGMVDMATEVFIELNEKGLSLYVGMHKIILQATFAKGGVGGVLN 470
Y+ + N + G + A E + G + A G V
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 471 FVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLD 530
+V ++ + R A L + ++ ++ +
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA---VAWSNLGCVFN 180
Query: 531 NEGKKWLIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPV 590
+G+ WL V + A+ +S
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS------- 233
Query: 591 NVLKKLLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLC--AFAK 648
V + + +G ++ A+D A
Sbjct: 234 ---------------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 649 NKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLL 708
Y + ++L +G EA +++ R+ ++ L ++G +
Sbjct: 267 QPH---FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN-NLANIKREQGNIE 322
Query: 709 DAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHD-LKIN 755
+A +L+ + L+ F +++ + G+L+EA + ++I+
Sbjct: 323 EAVRLYRK-ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 965 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.52 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.49 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.36 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.34 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.33 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.01 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.89 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.88 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.84 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.82 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.78 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.78 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.68 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.67 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.6 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.56 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.54 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.53 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.51 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.48 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.43 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.39 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.34 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.3 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.2 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.07 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.99 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.93 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.85 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.85 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.85 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.76 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.75 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.05 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.87 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.54 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.93 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.7 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.36 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.99 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.4 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.7 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.6e-23 Score=221.27 Aligned_cols=379 Identities=17% Similarity=0.094 Sum_probs=263.8
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 046930 16 LIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFC 95 (965)
Q Consensus 16 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (965)
++..+ .+.|++++|++.|+++++.. |.++.++..++.+|.+.|++++|+..|+++++.+ |.++.++..++.+|.
T Consensus 5 la~~~-~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~l~~~~~ 78 (388)
T d1w3ba_ 5 LAHRE-YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN---PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHH-HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHhh
Confidence 44555 57889999999999888766 4567788888888888999999999999988888 778888888999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCH
Q 046930 96 KIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDT 175 (965)
Q Consensus 96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 175 (965)
..|++++|+..+..+.... +.+...+..........+....+........... ....
T Consensus 79 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 135 (388)
T d1w3ba_ 79 ERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---------------------PDLY 135 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---------------------TTCT
T ss_pred hhccccccccccccccccc--cccccccccccccccccccccccccccccccccc---------------------cccc
Confidence 9999999999998888866 5566666666666667777777766666555432 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 046930 176 VSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGV 255 (965)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (965)
.............+....+...+.......+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 213 (388)
T d1w3ba_ 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhh
Confidence 45555566667778888888888887776433 66777778888888888888888888888765 45667788888888
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcchHHHHHcC----CCCCHHHHHHHHHHhhhcCChhHHHH
Q 046930 256 CRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCKVGRTSDAEEVSKG----ILGDVVTYSTLLHGYIEEDNVNGILE 331 (965)
Q Consensus 256 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~ 331 (965)
...|++++|...+++....+.. +...+..++..+.+.|++++|+..++. -|.+..++..++..+...|++++|++
T Consensus 214 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 292 (388)
T d1w3ba_ 214 KEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888775433 556666677777777777777666542 24455555556666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 046930 332 TKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSI 411 (965)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 411 (965)
.++...... +.+...+..+...+...|++++|+..|++..+.. +.+..++..++.++...|++++|+..|+++++..|
T Consensus 293 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 293 CYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666555543 3345555555566666666666666666655543 23344555566666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcC
Q 046930 412 SSVACYNCIINGLCKSG 428 (965)
Q Consensus 412 ~~~~~~~~l~~~~~~~g 428 (965)
.+..+|..++.+|.+.|
T Consensus 371 ~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 371 TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 66666666666655554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.5e-22 Score=217.16 Aligned_cols=360 Identities=16% Similarity=0.065 Sum_probs=285.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
++..+.+.|++++|++.|+++++.+ |.++.++..++.+|...|++++|+..|+++++.+ |.++.+|..++.++.+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhh
Confidence 5677889999999999999999998 8899999999999999999999999999999987 6778899999999999
Q ss_pred cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 046930 133 LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLIT 212 (965)
Q Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (965)
.|++++|+..+..+.+..+ .+...+..........+....+............. ....
T Consensus 80 ~g~~~~A~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 137 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKP---------------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCV 137 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHH
T ss_pred hcccccccccccccccccc---------------------ccccccccccccccccccccccccccccccccccc-cccc
Confidence 9999999999999987542 44555555666666667777777766666655433 4455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 046930 213 YTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKPSIVTYNTIINGLCK 292 (965)
Q Consensus 213 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 292 (965)
...........+....+...+....... +.+...+..+...+...|+++.|...+++..+..+. +...+..++..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 215 (388)
T d1w3ba_ 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhc
Confidence 5566667778888999999998888775 556778888889999999999999999999876433 56788888888888
Q ss_pred cCCcchHHHHHcCC----CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046930 293 VGRTSDAEEVSKGI----LGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFMVGALEDARALY 368 (965)
Q Consensus 293 ~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 368 (965)
.|++++|...+... +.+...+..++..+...|++++|+..++++.+.. +.+..++..+...+...|++++|...+
T Consensus 216 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~ 294 (388)
T d1w3ba_ 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89988888876532 4566667777777777888888888887777664 335667777777777788888888877
Q ss_pred HHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046930 369 QAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVFIELNEK 443 (965)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 443 (965)
+...... +.+...+..++.++...|++++|+..|+++++..|.+..++..++.+|...|++++|+..|+++++.
T Consensus 295 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 295 NTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7776643 4556677777777777888888888888877777777777777888888888888888888777764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.3e-15 Score=151.58 Aligned_cols=264 Identities=13% Similarity=0.036 Sum_probs=203.2
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
+....+..+..+ .+.|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+++++.+ |.+...+.
T Consensus 18 ~~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~ 91 (323)
T d1fcha_ 18 DHPQPFEEGLRR-LQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK---PDNQTALM 91 (323)
T ss_dssp TCSSHHHHHHHH-HHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred chHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc---cccccccc
Confidence 334455667776 79999999999999999866 5578889999999999999999999999999988 78899999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhh---------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCcc
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLGALKPNVVS---------------YTSLVIALCMLGRVNEVNELFVRMESEGLKF 153 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (965)
.++.+|...|++++|++.|++++... +..... ....+..+...+.+.+|...|.++++..+
T Consensus 92 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p-- 167 (323)
T d1fcha_ 92 ALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP-- 167 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST--
T ss_pred cccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh--
Confidence 99999999999999999999998754 221111 11122233455677888888888876532
Q ss_pred chhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046930 154 DVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVF 233 (965)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 233 (965)
...+..++..+...+...|++++|...|++++...+. +..+|..++.++...|++++|++.|
T Consensus 168 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 168 -----------------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp -----------------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------cccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHH
Confidence 1346778888888999999999999999999887544 6888889999999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC----------CCCHHHHHHHHHHHHhcCCcchHHH
Q 046930 234 KKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGI----------KPSIVTYNTIINGLCKVGRTSDAEE 301 (965)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----------~~~~~~~~~l~~~~~~~g~~~~a~~ 301 (965)
+++.+.. +.+..++..+..+|.+.|++++|+..|++.++..+ ......|..+-.++...++.+.+..
T Consensus 230 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 230 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998875 45677888899999999999999999998876311 1122344555555555565554433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.4e-15 Score=155.23 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=173.8
Q ss_pred HHhcCCHHHHHHHHHhhhccCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHH
Q 046930 596 LLKAGSVLDVYKLVMGAEDSLPCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEA 675 (965)
Q Consensus 596 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 675 (965)
+...|+.++|...++.+.... |.+..+|..++.++...|++++|+..|.++++..+. +...|..++.+|...|++++|
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A 106 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQA 106 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccccccc
Confidence 333333333333333333322 346889999999999999999999999999987543 778899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHhh----------------HHHHHHHHHccCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHh
Q 046930 676 FRLFDSLERIDMVPSEVS----------------YATLIYNLCKEGQLLDAKKLFDRMVLK-GFKPSTRIYNSFIDGYCK 738 (965)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 738 (965)
++.++++.... |+... ....+..+...+.+.+|.+.|.++++. .-.++..++..++.++..
T Consensus 107 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 184 (323)
T d1fcha_ 107 CEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 184 (323)
T ss_dssp HHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred ccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99999988743 32111 111122344556788899999998874 223456788899999999
Q ss_pred cCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHH
Q 046930 739 FGQLEEAFKFLHDLKINCLEPD-KFTVSAVINGFCQKGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEAR 816 (965)
Q Consensus 739 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~ 816 (965)
.|++++|+..+++++.. .|+ ..+|..++.+|...|++++|++.|+++++ +.|+... +..++.+|.+.|++++|+
T Consensus 185 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 185 SGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHH--HhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999874 674 67899999999999999999999999977 5776554 888999999999999999
Q ss_pred HHHHHHHhc
Q 046930 817 SILREMLQS 825 (965)
Q Consensus 817 ~~~~~~~~~ 825 (965)
..|+++++.
T Consensus 261 ~~~~~al~l 269 (323)
T d1fcha_ 261 EHFLEALNM 269 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999984
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.6e-12 Score=129.89 Aligned_cols=220 Identities=11% Similarity=0.073 Sum_probs=181.6
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCCchH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQG-NMSRAVEVLELMSDENVKYPFDNF 85 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~ 85 (965)
|....++..+...+ .+.+.+++|+..+++++... |.+..+|...+.++...| ++++|+..++.+++.+ |.+..
T Consensus 40 p~~~~a~~~~~~~~-~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~---p~~~~ 113 (315)
T d2h6fa1 40 DKFRDVYDYFRAVL-QRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNYQ 113 (315)
T ss_dssp HHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHH
T ss_pred HHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH---Hhhhh
Confidence 34455777777766 88999999999999999976 567778899998888876 5899999999999999 89999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhh
Q 046930 86 VCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQ 165 (965)
Q Consensus 86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (965)
+|..++.++.+.|++++|++.|+++++.+ |.+..+|..++.++...|++++|++.|+++++.++
T Consensus 114 a~~~~~~~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-------------- 177 (315)
T d2h6fa1 114 VWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-------------- 177 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--------------
T ss_pred HHHHHhHHHHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC--------------
Confidence 99999999999999999999999999987 78899999999999999999999999999998753
Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 046930 166 MVDKGIKPDTVSYTILLDGFSKEGT------IEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDL 239 (965)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 239 (965)
.+..+|+.+..++.+.+. +++|++.+.++++..+. +...|+.+...+.. ...+++.+.+....+.
T Consensus 178 -------~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 178 -------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDL 248 (315)
T ss_dssp -------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred -------ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence 568888888877776655 68899999999987654 78888877766544 4568888888888766
Q ss_pred CCCC-CHhHHHHHHHHHHh
Q 046930 240 GLVA-DEFVYATLIDGVCR 257 (965)
Q Consensus 240 ~~~~-~~~~~~~l~~~~~~ 257 (965)
...+ +...+..++..|..
T Consensus 249 ~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 249 QPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp TTTCCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHH
Confidence 4332 34556666666643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=8.5e-12 Score=126.01 Aligned_cols=216 Identities=10% Similarity=0.008 Sum_probs=180.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCC-hhhHHHHHHHHHHcCCCCCCHhhHHH
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGK-PELAIGFFENAISLGALKPNVVSYTS 125 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (965)
..++..++.++.+.+.+++|+.+++.+++.+ |.+..+|+..+.++...|+ +++|+..+++++..+ |.+..+|..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln---P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~ 117 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHH 117 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHH
Confidence 4466778888999999999999999999999 8999999999999999875 899999999999987 788899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 046930 126 LVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDR 205 (965)
Q Consensus 126 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 205 (965)
++.++.+.|++++|+..+.++++..+ .+..+|..++..+.+.|++++|++.|+++++.+
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~dp---------------------~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQDA---------------------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 176 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HhHHHHhhccHHHHHHHHhhhhhhhh---------------------cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence 99999999999999999999998643 578999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-
Q 046930 206 LRPNLITYTAIIFGFCKKGK------LEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGIKP- 278 (965)
Q Consensus 206 ~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~- 278 (965)
+. +..+|+.+..++.+.+. +++|+..+..+++.. +.+...|+.+...+.. ...+++.+.++...+....+
T Consensus 177 p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 177 VR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp TT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCC
T ss_pred Cc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcC
Confidence 65 78889888877777665 578999999998886 5578888877766544 45677888888777653332
Q ss_pred CHHHHHHHHHHHH
Q 046930 279 SIVTYNTIINGLC 291 (965)
Q Consensus 279 ~~~~~~~l~~~~~ 291 (965)
+...+..++..|.
T Consensus 254 ~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 254 SPYLIAFLVDIYE 266 (315)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3445555555554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1e-11 Score=122.63 Aligned_cols=222 Identities=14% Similarity=-0.003 Sum_probs=157.0
Q ss_pred CCchHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhh
Q 046930 25 NDPEKALLVLKDCLRNHGTLP--SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPEL 102 (965)
Q Consensus 25 ~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 102 (965)
.+.+.|+..+.+++......+ ...++..++.+|.+.|++++|+..|+++++.+ |.++.+|+.++.+|.+.|++++
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~---p~~~~a~~~lg~~~~~~g~~~~ 89 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDA 89 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC---CCCHHHHhhhchHHHHHHHHHH
Confidence 345677777888776544322 24568888999999999999999999999998 8899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHH
Q 046930 103 AIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILL 182 (965)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 182 (965)
|+..|+++++.+ |.+..++..++.++...|++++|...|+++++..+ .+......+.
T Consensus 90 A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------------~~~~~~~~~~ 146 (259)
T d1xnfa_ 90 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP---------------------NDPFRSLWLY 146 (259)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHH
T ss_pred hhhhhhHHHHHH--hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc---------------------ccHHHHHHHH
Confidence 999999999987 66788999999999999999999999999987642 3444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 046930 183 DGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGK----LEEAFTVFKKVEDLGLVADEFVYATLIDGVCRR 258 (965)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (965)
..+.+.+..+.+..+..........+ ..++ ++..+..... .+.+...+....... +....+|..+...+...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~ 222 (259)
T d1xnfa_ 147 LAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSL 222 (259)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHhhccchhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHC
Confidence 45556666666666666665543222 2222 2222221111 222222222211111 11234677788899999
Q ss_pred CCHhHHHHHHHHHHHCCC
Q 046930 259 GDLDCAFRLLEDMEKKGI 276 (965)
Q Consensus 259 g~~~~A~~~~~~~~~~g~ 276 (965)
|++++|...|++.+...+
T Consensus 223 g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 223 GDLDSATALFKLAVANNV 240 (259)
T ss_dssp TCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 999999999999988643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=3.6e-10 Score=117.87 Aligned_cols=240 Identities=15% Similarity=0.079 Sum_probs=160.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCcc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC----CCCC
Q 046930 622 VDYSTIVAALCREGYVNKALDLCAFAKNK----GITV---NIVTYNTVIHSLCRQGCFVEAFRLFDSLERID----MVPS 690 (965)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~ 690 (965)
.++..+...+...|++..+...+...... +... ....+..+...+...|+++.+...+....... ....
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 33455566677777777777777765532 1111 12355667788888999999999988887632 1122
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---h
Q 046930 691 EVSYATLIYNLCKEGQLLDAKKLFDRMVLK----GFKP--STRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPD---K 761 (965)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~ 761 (965)
...+..+...+...+++.++...+.+.... +..+ ....+..++..+...|+.++|...+++........+ .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 251 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 251 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH
Confidence 345556667778889999998888877652 1111 133556778888899999999999999876422222 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHh----CCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhcCcchhhhhccc
Q 046930 762 FTVSAVINGFCQKGDMEGALGFFLDFNT----KGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQSKSVLELINRVD 836 (965)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 836 (965)
..+..++.++...|++++|++.+++++. .+..|+... +..++.++...|++++|.+.++++++.......+..
T Consensus 252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~-- 329 (366)
T d1hz4a_ 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH-- 329 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHH--
Confidence 4566788899999999999999998864 355665544 888999999999999999999999873221100000
Q ss_pred cccccccHHHHHHHhhhcCcHHHHHHH
Q 046930 837 IEVESESVLNFLISLCEQGSILEAIAI 863 (965)
Q Consensus 837 ~~~~~~~~~~l~~~~~~~g~~~~A~~~ 863 (965)
.-.....+..++..+...++.+++..-
T Consensus 330 ~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 330 FVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 000122345555666667777777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=7.1e-12 Score=123.85 Aligned_cols=202 Identities=12% Similarity=0.005 Sum_probs=149.6
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|....+|+.++..| ...|++++|+..|++++... |.++.++..++.++.+.|++++|+..|+++++.+ |.++.+
T Consensus 34 ~~~a~~~~~~G~~y-~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a 107 (259)
T d1xnfa_ 34 DERAQLLYERGVLY-DSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYA 107 (259)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHH
T ss_pred HHHHHHHHHHHHHH-HHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH---hhhhhh
Confidence 44566899999988 89999999999999999977 5678899999999999999999999999999998 788899
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
+..++.+|...|++++|+..|+++++.. |.+......+...+.+.+..+.+..+........
T Consensus 108 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 169 (259)
T d1xnfa_ 108 HLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD---------------- 169 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC----------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc----------------
Confidence 9999999999999999999999999976 6666666666666677776666666666655432
Q ss_pred hhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 046930 167 VDKGIKPDTVSYTILLDGFSKE----GTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLG 240 (965)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 240 (965)
++...++ ++..+... +..+.+...+.......+. ...+|..+...+...|++++|...|+..++..
T Consensus 170 ------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 170 ------KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp ------CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ------hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 1111121 12222111 1223333333222221101 23466778889999999999999999998764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=2.3e-11 Score=125.06 Aligned_cols=196 Identities=11% Similarity=-0.035 Sum_probs=151.2
Q ss_pred CCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCcccHHHH-HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhH
Q 046930 618 CMDVVDYSTIVAALCREG--YVNKALDLCAFAKNKGITVNIVTY-NTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSY 694 (965)
Q Consensus 618 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 694 (965)
|.+..+|..++.++...+ ++++|+..++.+.+..++ +...+ ..++..+...+.+++|+..++++++.+ +-+...|
T Consensus 104 pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~ 181 (334)
T d1dcea1 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 181 (334)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHH
T ss_pred CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHH
Confidence 446777887777777765 488999999999887543 45554 456678888999999999999998865 2447888
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHh
Q 046930 695 ATLIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQ 773 (965)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 773 (965)
..+..++...|++++|...++...+. .|+. ......+...+..+++...+.+.... .| +...+..++..+..
T Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~ 254 (334)
T d1dcea1 182 HYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTV 254 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHH
Confidence 89999999999999887777665542 2221 22334456677888899999888875 44 45667777888888
Q ss_pred cCCHHHHHHHHHHhHhCCCCCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 774 KGDMEGALGFFLDFNTKGVSPDFLG-FLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.|++++|++.+.+... ..|+... +..++.++...|++++|+++|+++++
T Consensus 255 ~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 255 LQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999843 6676555 88899999999999999999999998
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1.3e-09 Score=113.63 Aligned_cols=310 Identities=12% Similarity=-0.003 Sum_probs=203.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHhHHHHH
Q 046930 383 YSTMIDGYCKLGRIEEALEIFDELRRMSISS-----VACYNCIINGLCKSGMVDMATEVFIELNEKGL-SLYVGMHKIIL 456 (965)
Q Consensus 383 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l 456 (965)
.......+...|++++|+.++++.++..|.+ ..++..++.++...|++++|+..+++.+.... .++.... +
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~ 91 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA---L 91 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH---H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH---H
Confidence 3445666778888888888888888776554 34677788888888888888888888765311 1111110 0
Q ss_pred HHHHHcCChhhHHHHHHHHHhcccccchhHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccchhcHHHHHHHHHhcCcch
Q 046930 457 QATFAKGGVGGVLNFVYRIENLRSEIYDIICNDVISFLCKRGSSEVASELYMFMRKRGSVVTDQSYYSILKGLDNEGKKW 536 (965)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 536 (965)
..+..++..+...|++..+...+.........
T Consensus 92 ----------------------------~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-------------------- 123 (366)
T d1hz4a_ 92 ----------------------------WSLIQQSEILFAQGFLQTAWETQEKAFQLINE-------------------- 123 (366)
T ss_dssp ----------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--------------------
Confidence 12334455577778888888877765441100
Q ss_pred hhhhhhHHHHHhcCCCchHHHHHHHHHHhhhcHHHHHHHHHhhhhcCccccchHHHHHHHHhcCCHHHHHHHHHhhhccC
Q 046930 537 LIGPLLSMFVKENGLVEPMISKFLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLLKAGSVLDVYKLVMGAEDSL 616 (965)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 616 (965)
.....
T Consensus 124 ---------------------------------------------------------------------------~~~~~ 128 (366)
T d1hz4a_ 124 ---------------------------------------------------------------------------QHLEQ 128 (366)
T ss_dssp ---------------------------------------------------------------------------TTCTT
T ss_pred ---------------------------------------------------------------------------cccch
Confidence 00000
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCC
Q 046930 617 PCMDVVDYSTIVAALCREGYVNKALDLCAFAKNKG----ITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI----DMV 688 (965)
Q Consensus 617 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~ 688 (965)
.+.....+..++..+...|+++.+...+....... ......++..+...+...+++.++...+.+.... +..
T Consensus 129 ~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 208 (366)
T d1hz4a_ 129 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 208 (366)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc
Confidence 01123445667788888999999999998877642 2223345666777888899999999988877652 111
Q ss_pred CC--HhhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC
Q 046930 689 PS--EVSYATLIYNLCKEGQLLDAKKLFDRMVLKGFKP---STRIYNSFIDGYCKFGQLEEAFKFLHDLKIN----CLEP 759 (965)
Q Consensus 689 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p 759 (965)
+. ...+..+...+...|++++|.+.++...+..... ....+..++.++...|++++|...++++... +..|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 288 (366)
T d1hz4a_ 209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 288 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccCh
Confidence 11 2345566677889999999999999887642111 2345667889999999999999999887632 3445
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCC----ChHHHHHHHHHHhcCCCHHHHHHH
Q 046930 760 D-KFTVSAVINGFCQKGDMEGALGFFLDFNTK----GVSP----DFLGFLYLVKGLCTKGRMEEARSI 818 (965)
Q Consensus 760 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p----~~~~~~~l~~~~~~~g~~~eA~~~ 818 (965)
+ ..++..++.+|...|++++|++.++++++. |... ....+..+...+...|+.+++...
T Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4 457888899999999999999999988652 2111 112233445555566666666543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=4.4e-11 Score=122.89 Aligned_cols=271 Identities=8% Similarity=0.004 Sum_probs=193.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHH----------HhcCCHHHHHHHHH
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGF----------SKEGTIEKAVGILN 199 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~A~~~~~ 199 (965)
....+..++|+.+++++++.+| -+...|+.....+ ...|++++|+.+++
T Consensus 39 ~~~~~~~~~al~~~~~~l~~~P---------------------~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~ 97 (334)
T d1dcea1 39 RQAGELDESVLELTSQILGANP---------------------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 97 (334)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHCC---------------------CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 3334445899999999987642 2345555444332 33455889999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHhHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 046930 200 KMIEDRLRPNLITYTAIIFGFCKKG--KLEEAFTVFKKVEDLGLVADEFVYA-TLIDGVCRRGDLDCAFRLLEDMEKKGI 276 (965)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~ 276 (965)
..++.+++ +...|..+..++...+ ++++|+..+..+.+.. +++...+. .....+...+.++.|+..++.++...+
T Consensus 98 ~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p 175 (334)
T d1dcea1 98 SCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (334)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred HHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence 99987655 7888888877777766 4889999999999886 44555554 445677778999999999999998865
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 046930 277 KPSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALF 356 (965)
Q Consensus 277 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (965)
. +...|+.+..++.+.|++++|...+................+...+..+++...+.......+ ++...+..++..+.
T Consensus 176 ~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~ 253 (334)
T d1dcea1 176 S-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKST 253 (334)
T ss_dssp C-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHH
T ss_pred C-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHH
Confidence 4 788999999999999999998777665533222333344455566677777777777766542 33444555566666
Q ss_pred hcCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 046930 357 MVGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCK 426 (965)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (965)
..+++++|...+.+..+.+ +.+..++..++.++...|++++|+..|+++.+.+|.....|..+...+.-
T Consensus 254 ~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 254 VLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 7778888888888777654 33456777788888888888888888888888877777777777665543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=6.6e-09 Score=104.52 Aligned_cols=220 Identities=9% Similarity=0.013 Sum_probs=169.2
Q ss_pred chHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--------------cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 27 PEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS--------------QGNMSRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
.+.+..+|++|+... +.++..|...++-+.. .+..++|..+|+++++... |.+...|...+.
T Consensus 32 ~~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~--p~~~~l~~~ya~ 107 (308)
T d2onda1 32 TKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence 345777899998865 4566677666654432 2345788999999987654 778888999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCC
Q 046930 93 GFCKIGKPELAIGFFENAISLGALKPN-VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGI 171 (965)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 171 (965)
.+.+.|+++.|..+|++++... +.+ ...|...+....+.|++++|.++|+++++.++
T Consensus 108 ~~~~~~~~~~a~~i~~~~l~~~--~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-------------------- 165 (308)
T d2onda1 108 YEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-------------------- 165 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--------------------
T ss_pred HHHhcccHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------------------
Confidence 9999999999999999999765 334 34788889989999999999999999987642
Q ss_pred CCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC--CHhH
Q 046930 172 KPDTVSYTILLDG-FSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGL-VA--DEFV 247 (965)
Q Consensus 172 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~ 247 (965)
.+...|...+.. +...|+.+.|..+|+.+++..+. +...|...+..+...|+.+.|..+|++..+... .| ....
T Consensus 166 -~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~i 243 (308)
T d2onda1 166 -TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp -CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred -CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 334444444433 34468999999999999987433 688899999999999999999999999887642 32 2457
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 046930 248 YATLIDGVCRRGDLDCAFRLLEDMEKK 274 (965)
Q Consensus 248 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 274 (965)
|...+..-...|+.+.+..+++++.+.
T Consensus 244 w~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 244 WARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888887777889999999999888664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=2.1e-08 Score=100.70 Aligned_cols=214 Identities=15% Similarity=0.050 Sum_probs=160.4
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhc--------------CChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 64 SRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKI--------------GKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 64 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
+++..+|++++... |.++..|..-+..+... +..++|..+|++++... .|.+...|...+..
T Consensus 33 ~Rv~~vyerAl~~~---~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~ 108 (308)
T d2onda1 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc-CCCCHHHHHHHHHH
Confidence 45667888888877 77888888877765433 34578999999998753 35666788888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 046930 130 LCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPN 209 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (965)
+...|++++|..+|+++++..+ .....+|..++....+.|+++.|.++|.++++..+. +
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~~--------------------~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~ 167 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIED--------------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-R 167 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSS--------------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-C
T ss_pred HHhcccHHHHHHHHHHHHHHhc--------------------CChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-c
Confidence 9999999999999999987532 122457888999999999999999999999987544 4
Q ss_pred HHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC--HHHHHH
Q 046930 210 LITYTAIIFG-FCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRLLEDMEKKGI-KPS--IVTYNT 285 (965)
Q Consensus 210 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~--~~~~~~ 285 (965)
...|...+.. +...|+.+.|..+|+.+.+.. +.+...|...+..+...|+++.|..+|++...... .|+ ...|..
T Consensus 168 ~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~ 246 (308)
T d2onda1 168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 246 (308)
T ss_dssp THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 4455444433 344688999999999999874 56788899999999999999999999999887632 222 345666
Q ss_pred HHHHHHhcCCcchHHHHH
Q 046930 286 IINGLCKVGRTSDAEEVS 303 (965)
Q Consensus 286 l~~~~~~~g~~~~a~~~~ 303 (965)
.+..-...|+.+.+..+.
T Consensus 247 ~~~fE~~~G~~~~~~~~~ 264 (308)
T d2onda1 247 FLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 666555566666555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=6.7e-09 Score=95.25 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..|+. +..+ ...|+++.|++.|..+ .++++.++..++.+|...|++++|++.|+++++.+ |..+.+|..+
T Consensus 7 ~l~~~-g~~~-~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld---p~~~~a~~~~ 76 (192)
T d1hh8a_ 7 SLWNE-GVLA-ADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQR 76 (192)
T ss_dssp HHHHH-HHHH-HHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHH-HHHH-HHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---hhhhhhHHHH
Confidence 34554 5544 7899999999999873 25678899999999999999999999999999999 8899999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCC----------------HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPN----------------VVSYTSLVIALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
+.++.+.|++++|+..|++++... +++ ..++..++.++.+.|++++|.+.+.++++..+
T Consensus 77 g~~~~~~g~~~~A~~~~~kAl~~~--~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 77 GMLYYQTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhccHHHHHHHHHHHHHhC--ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999998743 211 24567889999999999999999999987654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=8.7e-09 Score=85.49 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=65.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHH
Q 046930 52 SLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALC 131 (965)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (965)
..+..+...|++++|+..|..+++.+ |.++.+|..++.+|...|++++|+..|+++++.+ |.++..|..++.++.
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC---CcchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHH
Confidence 34556667777777777777777766 6667777777777777777777777777777665 566667777777777
Q ss_pred hcCChhHHHHHHHHHHHC
Q 046930 132 MLGRVNEVNELFVRMESE 149 (965)
Q Consensus 132 ~~~~~~~A~~~~~~~~~~ 149 (965)
..|++++|+..|+++++.
T Consensus 83 ~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777777777664
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=7.8e-09 Score=85.79 Aligned_cols=108 Identities=12% Similarity=0.034 Sum_probs=95.7
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 046930 14 DSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSG 93 (965)
Q Consensus 14 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (965)
..-+..+ ...|++++|+..|..++... |.++..+..++.+|...|++++|+..|..+++.+ |.++.+|..++.+
T Consensus 7 ~~~g~~~-~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~g~~ 80 (117)
T d1elwa_ 7 KEKGNKA-LSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSRKAAA 80 (117)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhc---cchhhHHHHHHHH
Confidence 4456665 79999999999999999977 6688899999999999999999999999999998 8999999999999
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 94 FCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
+...|++++|+..|+++++.. |.++..+..+.++
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~l 114 (117)
T d1elwa_ 81 LEFLNRFEEAKRTYEEGLKHE--ANNPQLKEGLQNM 114 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 999999999999999999876 5666666666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=3.9e-08 Score=89.98 Aligned_cols=142 Identities=11% Similarity=0.010 Sum_probs=110.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM 132 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (965)
.+..+...|+++.|++.|..+ . ++++.+|+.+|.+|...|++++|++.|+++++.+ |.++.+|..++.++.+
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i---~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAV---Q---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS---S---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhc---C---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHh
Confidence 355688999999999999864 3 5677899999999999999999999999999988 7888899999999999
Q ss_pred cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 046930 133 LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRP 208 (965)
Q Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (965)
.|++++|+..|++++..........+. .......++ ..++..+..++.+.|++++|.+.|..++...+.+
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~------~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYK------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECG------GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHH------HhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999998653221111000 000011112 4566778888999999999999999988765543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=2.4e-08 Score=88.57 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
+...+..|.+.|++++|+..|+++++.+ |.+..+|..++.+|...|++++|++.|+++++.+ |.+..+|..++.+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc---hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHH
Confidence 3445666777888888888888888877 6777888888888888888888888888888766 6667778888888
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 046930 130 LCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~~~ 149 (965)
+...|++++|+..|++++..
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHc
Confidence 88888888888888887765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.4e-08 Score=88.57 Aligned_cols=124 Identities=7% Similarity=-0.003 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..+...+..| .+.|++++|+..|.+++... |.+...|..++.+|...|++++|+..|+++++.+ |.+..+|..+
T Consensus 11 ~~l~~~gn~~-~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~---p~~~~a~~~~ 84 (159)
T d1a17a_ 11 EELKTQANDY-FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRR 84 (159)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc---ccchHHHHHH
Confidence 3566677776 79999999999999999987 5688899999999999999999999999999999 8999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH--HHhcCChhHHHHH
Q 046930 91 VSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA--LCMLGRVNEVNEL 142 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~ 142 (965)
+.++...|++++|+..|++++... |.+...+..+..+ ....+.+++|...
T Consensus 85 g~~~~~~g~~~eA~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 85 AASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999976 5566666555544 3334445566544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=5e-08 Score=96.84 Aligned_cols=214 Identities=12% Similarity=0.003 Sum_probs=147.2
Q ss_pred cchhhHHHHHHHHHHccCCchHHHHHHHHHHHhC---CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---C
Q 046930 8 HQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNH---GTLP-SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVK---Y 80 (965)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~ 80 (965)
.....|...+..| ...+++++|+..|.+++... +.++ ...++..++.+|.+.|++++|++.|+++++.... .
T Consensus 35 ~Aa~~y~~aa~~y-~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~ 113 (290)
T d1qqea_ 35 EAADLCVQAATIY-RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (290)
T ss_dssp HHHHHHHHHHHHH-HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence 3345788888887 89999999999999998743 1111 2357889999999999999999999988775321 1
Q ss_pred CCchHHHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccch
Q 046930 81 PFDNFVCSSVVSGFCK-IGKPELAIGFFENAISLGALKPN----VVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDV 155 (965)
Q Consensus 81 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (965)
.....++..++..|.. .|++++|++.|+++.+......+ ..++..++.++...|++++|+..|+++....+....
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~ 193 (290)
T d1qqea_ 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence 2235667788888865 69999999999999764211112 236788999999999999999999999876432111
Q ss_pred hhhhhHHhhhhhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHhc--CChHH
Q 046930 156 VFYSCWICGQMVDKGIKPD-TVSYTILLDGFSKEGTIEKAVGILNKMIEDRLR-PN---LITYTAIIFGFCKK--GKLEE 228 (965)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~~--g~~~~ 228 (965)
.... ...+...+..+...|+++.|...|++..+..+. ++ ......++.++... +.+++
T Consensus 194 ---------------~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~e 258 (290)
T d1qqea_ 194 ---------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSE 258 (290)
T ss_dssp ---------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHH
T ss_pred ---------------hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 1112 223445555677889999999999998775322 11 12334455554442 34667
Q ss_pred HHHHHHHHH
Q 046930 229 AFTVFKKVE 237 (965)
Q Consensus 229 A~~~~~~~~ 237 (965)
|+..|+.+.
T Consensus 259 ai~~y~~~~ 267 (290)
T d1qqea_ 259 HCKEFDNFM 267 (290)
T ss_dssp HHHHHTTSS
T ss_pred HHHHHHHHh
Confidence 777766544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=1.2e-07 Score=94.07 Aligned_cols=208 Identities=13% Similarity=0.022 Sum_probs=140.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCC---CCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC----Hhh
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENV---KYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN----VVS 122 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~ 122 (965)
|...+.+|...|+|++|.+.|.++.+... ..+....+|..++.+|.+.|++++|++.|++++....-..+ ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 44557789999999999999999987521 11344578999999999999999999999998864211122 335
Q ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046930 123 YTSLVIALCM-LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKP-DTVSYTILLDGFSKEGTIEKAVGILNK 200 (965)
Q Consensus 123 ~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 200 (965)
+..++.+|.. .|++++|++.|+++.+... ..+.++ -..++..++..+...|++++|...|++
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~----------------~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~ 183 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYA----------------QDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH----------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHH----------------hcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence 6677777754 6999999999999875311 111111 145677888999999999999999999
Q ss_pred HHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC---HhHHHHHHHHHHh--cCCHhHHHHHH
Q 046930 201 MIEDRLRPNL------ITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLV-AD---EFVYATLIDGVCR--RGDLDCAFRLL 268 (965)
Q Consensus 201 ~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~g~~~~A~~~~ 268 (965)
+......... ..+...+..+...|+++.|...+++..+..+. ++ ......++.++.. .+.+++|+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y 263 (290)
T d1qqea_ 184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (290)
T ss_dssp HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8876332111 22344555667788999999999888765321 11 1234455555543 23466777776
Q ss_pred HHHHH
Q 046930 269 EDMEK 273 (965)
Q Consensus 269 ~~~~~ 273 (965)
+.+.+
T Consensus 264 ~~~~~ 268 (290)
T d1qqea_ 264 DNFMR 268 (290)
T ss_dssp TTSSC
T ss_pred HHHhh
Confidence 65443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.78 E-value=2.2e-08 Score=82.15 Aligned_cols=93 Identities=15% Similarity=0.035 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
....+..+.+.|++++|+..|++++..+ |.++.+|..++.++.+.|++++|+..|+++++.+ |.+..+|..++.+
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~ 93 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVS 93 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc---cccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHH
Confidence 3445666778888888888888888877 6778888888888888888888888888888776 6677788888888
Q ss_pred HHhcCChhHHHHHHHHHH
Q 046930 130 LCMLGRVNEVNELFVRME 147 (965)
Q Consensus 130 ~~~~~~~~~A~~~~~~~~ 147 (965)
|...|++++|++.+++.+
T Consensus 94 y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 94 HTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 888888888888887753
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=2.5e-08 Score=93.13 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=83.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHH
Q 046930 45 PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYT 124 (965)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (965)
|+...+...+..+.+.|++++|+..|.++++.+ |.++.+|..++.+|.+.|++++|+..|+++++.+ |.++.+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~---p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHH
Confidence 566677778888888888888888888888888 7888888888888888888888888888888765 56677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 125 SLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 125 ~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
.++.+|...|++++|+..|+++++.
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888888887764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.74 E-value=5.6e-06 Score=80.50 Aligned_cols=226 Identities=15% Similarity=0.063 Sum_probs=167.3
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCCch
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCS----QGNMSRAVEVLELMSDENVKYPFDN 84 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (965)
++..+..|+..+ .+.+|+++|++.|+++.+. .+..++..|+.+|.. ..++..|...+......+ .+
T Consensus 1 ~p~~~~~lG~~~-~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-----~~ 70 (265)
T d1ouva_ 1 DPKELVGLGAKS-YKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YS 70 (265)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CH
T ss_pred CHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-----cc
Confidence 355778888776 6889999999999998763 356777788888876 668899999999888765 34
Q ss_pred HHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCccchh
Q 046930 85 FVCSSVVSGFCK----IGKPELAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEGLKFDVV 156 (965)
Q Consensus 85 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 156 (965)
.+...++..+.. ..+.+.|...|+.+.+.+ .......++..+.. ......+...+......
T Consensus 71 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~------- 139 (265)
T d1ouva_ 71 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL------- 139 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------
T ss_pred chhhccccccccccccchhhHHHHHHHhhhhhhh----hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc-------
Confidence 566677776654 457788999999998754 34444445444443 34566777777766653
Q ss_pred hhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHH
Q 046930 157 FYSCWICGQMVDKGIKPDTVSYTILLDGFSK----EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCK----KGKLEE 228 (965)
Q Consensus 157 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 228 (965)
.+...+..|...+.. ..+...+...+....+.| +..+...+...|.. ..++++
T Consensus 140 ----------------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 140 ----------------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp ----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred ----------------cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhh
Confidence 567778888888775 457788888888888754 67777777777765 568999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC
Q 046930 229 AFTVFKKVEDLGLVADEFVYATLIDGVCR----RGDLDCAFRLLEDMEKKGIK 277 (965)
Q Consensus 229 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 277 (965)
|+..|....+.| ++..+..|..+|.+ ..+.++|.++|++....|..
T Consensus 201 A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 201 ALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 999999998876 45566677777765 34788999999999887754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=2e-08 Score=93.73 Aligned_cols=100 Identities=7% Similarity=-0.044 Sum_probs=91.0
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHH
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCS 88 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (965)
+...+-..+..| .+.|++++|+..|.+++... |.++.+|..++.+|.+.|++++|+..|+.+++.+ |.+..+|.
T Consensus 3 ~a~~l~~~Gn~~-~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~---p~~~~a~~ 76 (201)
T d2c2la1 3 SAQELKEQGNRL-FVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHF 76 (201)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHH
T ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC---CCcHHHHH
Confidence 344566778887 79999999999999999987 5688899999999999999999999999999998 88999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC
Q 046930 89 SVVSGFCKIGKPELAIGFFENAISLG 114 (965)
Q Consensus 89 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 114 (965)
.++.+|...|++++|+..|++++...
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.7e-07 Score=82.34 Aligned_cols=122 Identities=16% Similarity=0.059 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-------------HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-------------SFTFCSLVYSFCSQGNMSRAVEVLELMSDEN 77 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (965)
..+...+..+ .+.|+++.|+..|.+++...+..+. ..++..++.+|.+.|++++|+..++.+++.+
T Consensus 14 ~~l~~~G~~~-~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 14 TIVKERGTVY-FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHH-HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 3455666776 7899999999999999986543222 2456778999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhH
Q 046930 78 VKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNE 138 (965)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (965)
|.++.++..++.+|...|++++|+..|+++++.+ |.+..+...+..+..+.+...+
T Consensus 93 ---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 93 ---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999987 6677777777666555544443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.67 E-value=6.1e-08 Score=79.37 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSV 90 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (965)
..+..++..+ .+.|++++|+..|++++... |.++.++..++.++.+.|++++|+..|+++++.+ |.+..+|..+
T Consensus 17 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~l 90 (112)
T d1hxia_ 17 ENPMEEGLSM-LKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAAL 90 (112)
T ss_dssp SCHHHHHHHH-HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHH-HHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc---cccccchHHH
Confidence 3556677776 79999999999999999977 5578899999999999999999999999999999 8999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 046930 91 VSGFCKIGKPELAIGFFENAI 111 (965)
Q Consensus 91 ~~~~~~~g~~~~A~~~~~~~~ 111 (965)
+.+|...|++++|++.|++.+
T Consensus 91 a~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 91 AVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 999999999999999999875
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.60 E-value=5.2e-05 Score=73.38 Aligned_cols=205 Identities=12% Similarity=0.003 Sum_probs=142.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCCHh
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK----IGKPELAIGFFENAISLGALKPNVV 121 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 121 (965)
||..+..|+..+.+.+++++|++.|+++.+.+ +..++..++.+|.. ..++..|..+++..... .++.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----~~~~ 71 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSN 71 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----cccc
Confidence 45677788888888899999999999988765 45778888888886 66888899999888873 3556
Q ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 046930 122 SYTSLVIALCM----LGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSK----EGTIEK 193 (965)
Q Consensus 122 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 193 (965)
....++..+.. ..+.+.|...++...+.+ .......+...+.. ......
T Consensus 72 a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g-----------------------~~~a~~~l~~~~~~~~~~~~~~~~ 128 (265)
T d1ouva_ 72 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----------------------YAEGCASLGGIYHDGKVVTRDFKK 128 (265)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred hhhccccccccccccchhhHHHHHHHhhhhhhh-----------------------hhhHHHhhcccccCCCcccchhHH
Confidence 66666665554 466778888888887653 22333333333332 456777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHhHHH
Q 046930 194 AVGILNKMIEDRLRPNLITYTAIIFGFCK----KGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCR----RGDLDCAF 265 (965)
Q Consensus 194 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 265 (965)
+...+...... .+...+..+...+.. ..+...+...++...+.| +......+...|.. ..+++.|.
T Consensus 129 a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~ 202 (265)
T d1ouva_ 129 AVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEAL 202 (265)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhh
Confidence 77777777664 366777777777765 346677777777777665 45566666666654 56788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 046930 266 RLLEDMEKKGIKPSIVTYNTIINGLC 291 (965)
Q Consensus 266 ~~~~~~~~~g~~~~~~~~~~l~~~~~ 291 (965)
.+|.+..+.| +...+..|..+|.
T Consensus 203 ~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 203 ARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hhHhhhhccc---CHHHHHHHHHHHH
Confidence 8888888775 3455555666554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2e-07 Score=76.95 Aligned_cols=107 Identities=10% Similarity=0.038 Sum_probs=81.7
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 15 SLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGN---MSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 15 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
.++..+ ...+++++|.+.|++++... |.++.++..++.++.+.++ +++|+.+|+.++..++. |....+++.++
T Consensus 4 ~l~n~~-~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~-~~~~~~~~~Lg 79 (122)
T d1nzna_ 4 AVLNEL-VSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK-EEQRDYVFYLA 79 (122)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH-HHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC-chHHHHHHHHH
Confidence 455665 67788999999999999876 5678888889988877554 45699999998887631 22245888999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHH
Q 046930 92 SGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLV 127 (965)
Q Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 127 (965)
.+|.+.|++++|++.|+++++.+ |.+..+.....
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~--P~~~~A~~l~~ 113 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTE--PQNNQAKELER 113 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 99999999999999999999876 55555554433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.54 E-value=5.1e-07 Score=78.78 Aligned_cols=112 Identities=14% Similarity=0.035 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC---C-----------HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 046930 12 FFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLP---S-----------SFTFCSLVYSFCSQGNMSRAVEVLELMSDEN 77 (965)
Q Consensus 12 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (965)
.+...+..+ .+.|+|..|+..|..++...+..+ + ..++..++.+|.+.|++++|++.++.+++.+
T Consensus 19 ~~~~~G~~~-f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~ 97 (153)
T d2fbna1 19 DIKEEGNEF-FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97 (153)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence 456677777 688999999999999997543222 1 1356678888999999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHH
Q 046930 78 VKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIA 129 (965)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (965)
|.+..+|..++.++...|++++|+..|+++++.+ |.+..+...+..+
T Consensus 98 ---p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~~~~l~~~ 144 (153)
T d2fbna1 98 ---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELC 144 (153)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred ---chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 8889999999999999999999999999999876 5566666555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.53 E-value=9.4e-07 Score=78.61 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCC-------------HHhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 046930 10 SRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPS-------------SFTFCSLVYSFCSQGNMSRAVEVLELMSDE 76 (965)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (965)
...+...+..+ .+.|++.+|+..|+.++...+..+. ..++..++.+|.+.|++++|+..++.++..
T Consensus 15 a~~~~e~G~~~-~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 15 AAIVKEKGTVY-FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 34566677777 7899999999999999864432221 234667888999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChh-HHHHHHHHHH
Q 046930 77 NVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVN-EVNELFVRME 147 (965)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~ 147 (965)
+ |.+..++..++.++...|++++|+..|++++..+ |.+..+...+..+....+... ...+.|.+|.
T Consensus 94 ~---p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 94 D---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8 8999999999999999999999999999999977 677777777776665555443 3444555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.3e-07 Score=76.37 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCH-------h
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNV-------V 121 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~ 121 (965)
.+..++..+.+.|+|++|+..|.++++.+ |.+..++..++.+|.+.|++++|+..|+++++.+ |.+. .
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--~~~~~~~~~~a~ 80 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 34567778888888888888888888887 7788888888888888888888888888888754 2222 2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 122 SYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 122 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
+|..++..+...+++++|++.|.+.+..
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5566777777888888888888887764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=6.5e-08 Score=103.98 Aligned_cols=230 Identities=10% Similarity=-0.079 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHH
Q 046930 29 KALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFE 108 (965)
Q Consensus 29 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 108 (965)
+|.+.|++++... +..+.++..++.++..+|++++| |++++..+ |............+ ...+..+++.++
T Consensus 4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d---p~~a~~~~~e~~Lw--~~~y~~~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD---LEYALDKKVEQDLW--NHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC---HHHHHHHTHHHHHH--HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC---hhhHHHHhHHHHHH--HHHHHHHHHHHH
Confidence 6788899988755 33445667788888888888776 78888777 44444433322222 123566778888
Q ss_pred HHHHcCCCCCCHhhH-H-HHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHH
Q 046930 109 NAISLGALKPNVVSY-T-SLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFS 186 (965)
Q Consensus 109 ~~~~~~~~~~~~~~~-~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 186 (965)
+..+... .++.... . .........+.++.|+..+++..+.. .++...+..+...+.
T Consensus 74 ~~~k~~~-~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~---------------------~~~~~~~~~lg~~~~ 131 (497)
T d1ya0a1 74 GQAKNRA-NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD---------------------LPCRVKSSQLGIISN 131 (497)
T ss_dssp HHHSCSS-CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------------
T ss_pred Hhccccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------hhhHHHHHHhHHHHH
Confidence 7775431 2222211 1 12222333455566655555444321 245667778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHH
Q 046930 187 KEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFR 266 (965)
Q Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 266 (965)
+.|+.++|...+....... ...++..++..+...|++++|+..|.++.+.. |.+...|+.|...+...|+..+|..
T Consensus 132 ~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~ 207 (497)
T d1ya0a1 132 KQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIF 207 (497)
T ss_dssp -----------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999998888776532 23567778889999999999999999999886 5577899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 046930 267 LLEDMEKKGIKPSIVTYNTIINGLCKVGR 295 (965)
Q Consensus 267 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 295 (965)
.|.+.+... +|-..++..|...+.+..+
T Consensus 208 ~y~ral~~~-~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 208 YYCRSIAVK-FPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HHHHHHSSS-BCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCC-CCCHHHHHHHHHHHHHhhh
Confidence 999998764 4577888888888766543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.7e-07 Score=76.16 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHhcC---CHHHHHHHHHHhHhCCCCCChH-HHHHHHH
Q 046930 730 NSFIDGYCKFGQLEEAFKFLHDLKINCLEP-DKFTVSAVINGFCQKG---DMEGALGFFLDFNTKGVSPDFL-GFLYLVK 804 (965)
Q Consensus 730 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~ 804 (965)
..++..+...+++++|++.|++++.. .| +..++..++.++.+.+ ++++|+++|++++..+..|+.. .++.|+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45667777788888888888888874 55 5677788888886644 4456888888885533223322 4777888
Q ss_pred HHhcCCCHHHHHHHHHHHHh
Q 046930 805 GLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 805 ~~~~~g~~~eA~~~~~~~~~ 824 (965)
+|.+.|++++|+++|+++++
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 88888888888888888887
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.8e-06 Score=76.75 Aligned_cols=101 Identities=10% Similarity=-0.081 Sum_probs=86.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC------------chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF------------DNFVCSSVVSGFCKIGKPELAIGFFENAISLGA 115 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 115 (965)
..+...+..+.+.|++++|+..|..+++..+..+. ...++..++.+|.+.|++++|+..+++++..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 34556778899999999999999999887532111 23457789999999999999999999999987
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 116 LKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
|.++.++..++.+|...|++++|+..|+++++.+
T Consensus 93 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 93 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 7789999999999999999999999999999864
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.43 E-value=6.2e-07 Score=80.06 Aligned_cols=115 Identities=11% Similarity=0.048 Sum_probs=87.5
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCC--------------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHG--------------TLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENV 78 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 78 (965)
+...+..+ ...|+++.|+..|.+++.... .+.....+..++.++.+.|++++|+..|.++++.+
T Consensus 30 ~~~~~~~~-~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~- 107 (169)
T d1ihga1 30 LKNIGNTF-FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 107 (169)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-
Confidence 34445555 688999999999998875210 01233456778888889999999999999999888
Q ss_pred CCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhc
Q 046930 79 KYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCML 133 (965)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (965)
|.++.+|..++.+|...|++++|++.|+++++.+ |.+..+...+..+..+.
T Consensus 108 --p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 108 --PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKI 158 (169)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred --hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999876 66666666666554433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.5e-06 Score=73.00 Aligned_cols=107 Identities=13% Similarity=0.064 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc----hHH
Q 046930 11 RFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD----NFV 86 (965)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~ 86 (965)
..+..++..+ ...|+|++|+..|.++++.. |.+..++..++.+|.+.|++++|+..++.+++.++..+.. ..+
T Consensus 5 ~~~k~~G~~~-~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 5 LKEKELGNDA-YKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3566778887 78899999999999999976 5678899999999999999999999999999876321211 246
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhH
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSY 123 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (965)
+..++..+...+++++|++.|++++... ++....
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~---~~~~~~ 115 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVL 115 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCHHHH
Confidence 7778888899999999999999999754 555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.39 E-value=1.8e-06 Score=76.97 Aligned_cols=99 Identities=9% Similarity=-0.025 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCC-------------CCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 046930 50 FCSLVYSFCSQGNMSRAVEVLELMSDENV-------------KYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGAL 116 (965)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 116 (965)
+...+..+...|++++|+..|.++++... ..|....++..++.++.+.|++++|+..|+++++.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-- 107 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 107 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh--
Confidence 44567778899999999999988764210 014566778899999999999999999999999987
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 117 KPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
|.++.+|..++.++...|++++|+..|+++++..
T Consensus 108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 7888999999999999999999999999999864
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.36 E-value=6.8e-06 Score=72.85 Aligned_cols=101 Identities=11% Similarity=-0.011 Sum_probs=85.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------------CchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 046930 48 FTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYP------------FDNFVCSSVVSGFCKIGKPELAIGFFENAISLGA 115 (965)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 115 (965)
..+...+..+.+.|++.+|+..|..++..-...+ ....++..++.+|.+.|++++|+..+++++..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~- 94 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 94 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-
Confidence 3466778889999999999999998876321111 122456778999999999999999999999987
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 116 LKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
|.+..+|..++.++...|++++|+..|+++++..
T Consensus 95 -p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 95 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7889999999999999999999999999999864
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.34 E-value=9.4e-07 Score=75.95 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=67.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhc----------CChhhHHHHHHHHHHcCCCCCCHhhHHHH
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKI----------GKPELAIGFFENAISLGALKPNVVSYTSL 126 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 126 (965)
|-+.+.|++|+..|+.+++.+ |.++.++..++.++... +.+++|+..|+++++.+ |.+..+|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~---P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhH
Confidence 345567888888888888888 78888888888888754 44578999999999887 7788888888
Q ss_pred HHHHHhcCC-----------hhHHHHHHHHHHHC
Q 046930 127 VIALCMLGR-----------VNEVNELFVRMESE 149 (965)
Q Consensus 127 ~~~~~~~~~-----------~~~A~~~~~~~~~~ 149 (965)
+.+|...|+ +++|.+.|+++++.
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 888876553 45666666666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=6.6e-07 Score=95.92 Aligned_cols=218 Identities=8% Similarity=-0.081 Sum_probs=126.8
Q ss_pred ccchhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHH
Q 046930 7 PHQSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFV 86 (965)
Q Consensus 7 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (965)
|....++..++..+ ..+|++++| |++++..+ |+.......-..+. ...+..+++.+....+...........
T Consensus 17 p~~a~a~~~la~~~-~~~~~l~ea---ye~~i~~d---p~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k~~~~~~~~~~~ 88 (497)
T d1ya0a1 17 ADMTDSKLGPAEVW-TSRQALQDL---YQKMLVTD---LEYALDKKVEQDLW-NHAFKNQITTLQGQAKNRANPNRSEVQ 88 (497)
T ss_dssp GGGTCSSSCSSSSH-HHHHHHHHH---HHHHHHHC---HHHHHHHTHHHHHH-HHHTHHHHHHHHHHHSCSSCTTTTHHH
T ss_pred CCCHHHHhhHHHHH-HHHchHHHH---HHHHHHcC---hhhHHHHhHHHHHH-HHHHHHHHHHHHHhcccccCccHHHHH
Confidence 34444555566655 566677766 77777654 22111111111111 223567788888777654311112222
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCccchhhhhhHHhhhh
Q 046930 87 CSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGLKFDVVFYSCWICGQM 166 (965)
Q Consensus 87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~ 166 (965)
.......+...+.|+.|+..|.+..... +++...+..++..+.+.|+.++|...+.+....
T Consensus 89 ~~~~~~l~~a~~~Y~~ai~~l~~~~~l~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------- 149 (497)
T d1ya0a1 89 ANLSLFLEAASGFYTQLLQELCTVFNVD--LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY----------------- 149 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC--hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC-----------------
Confidence 2223344556677888888888877655 566778889999999999999999988887652
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 046930 167 VDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEF 246 (965)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 246 (965)
....++..++..+...|++++|...|.++.+..+. +..+|+.++.++...|+..+|+..|.+..... +|...
T Consensus 150 ------~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~ 221 (497)
T d1ya0a1 150 ------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPA 221 (497)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHH
T ss_pred ------CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHH
Confidence 11356778899999999999999999999998655 77899999999999999999999999999876 66788
Q ss_pred HHHHHHHHHHhcC
Q 046930 247 VYATLIDGVCRRG 259 (965)
Q Consensus 247 ~~~~l~~~~~~~g 259 (965)
++..|...+.+..
T Consensus 222 a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 222 ASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 8888888776543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.30 E-value=1e-05 Score=70.14 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-------------chHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 046930 49 TFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPF-------------DNFVCSSVVSGFCKIGKPELAIGFFENAISLGA 115 (965)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 115 (965)
.+...+..+.+.|++.+|+..|..++..-...+. ...++..++.+|.+.|++++|++.++++++.+
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~- 97 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 97 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-
Confidence 3455677888999999999999998875421111 12467789999999999999999999999987
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 116 LKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
|.++.+|..++.++...|++++|+..|+++++.+
T Consensus 98 -p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 98 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7889999999999999999999999999999864
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.20 E-value=1.6e-06 Score=74.51 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=90.6
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQ----------GNMSRAVEVLELMSDENVKYPFDNFVCSSVV 91 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (965)
.+.+.|++|+..|+.++... |.++.++..++.++... +.+++|+..|+++++.+ |.++.+|+.+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~---P~~~~a~~~lG 82 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc---chhhHHHhhHH
Confidence 34567899999999999987 67888899999888754 45678999999999999 89999999999
Q ss_pred HHHHhcCC-----------hhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 046930 92 SGFCKIGK-----------PELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEG 150 (965)
Q Consensus 92 ~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 150 (965)
.+|...|+ +++|.+.|+++++.+ |.+...+..+... .+|.+++.++.+.|
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--P~~~~~~~~L~~~-------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEMT-------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH-------HTHHHHHHHHHHSS
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhhcccccC--CCHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 99987664 688999999999976 4444444444432 46677777776553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.07 E-value=4.8e-05 Score=67.40 Aligned_cols=116 Identities=11% Similarity=0.002 Sum_probs=83.8
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 046930 13 FDSLIQGFCIKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVS 92 (965)
Q Consensus 13 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (965)
+...+... ...|++++|...|+.++..-.-++-. ......-+...-..+. +....++..++.
T Consensus 14 ~~~~g~~~-~~~g~~e~A~~~~~~AL~l~rG~~l~-----------~~~~~~w~~~~r~~l~------~~~~~a~~~la~ 75 (179)
T d2ff4a2 14 EKTAGVHA-AAAGRFEQASRHLSAALREWRGPVLD-----------DLRDFQFVEPFATALV------EDKVLAHTAKAE 75 (179)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHHHTTCCSSTTG-----------GGTTSTTHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHHHHhhCcccccc-----------cCcchHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34445555 68888888888888888643222111 0111111112122221 234478899999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 93 GFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
++...|++++|+..+++++..+ |-+...|..++.+|.+.|++.+|+..|+++..
T Consensus 76 ~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 76 AEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999987 77888999999999999999999999999865
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=0.004 Score=60.53 Aligned_cols=44 Identities=5% Similarity=0.071 Sum_probs=24.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHH
Q 046930 387 IDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDM 432 (965)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (965)
+....+.+++......++.....+ +....+.+...|...++++.
T Consensus 255 V~~~~k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 255 VNYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHH
Confidence 333445555555555555544432 34566777777777777544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.2e-05 Score=61.15 Aligned_cols=80 Identities=9% Similarity=-0.062 Sum_probs=59.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHh
Q 046930 46 SSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVK----YPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVV 121 (965)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 121 (965)
++..+..++..+.+.|++++|+..|+++++..+. .+....++..++.++.+.|++++|+..|+++++.+ |.+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCHH
Confidence 4556677888888888888888888887765321 12345678888888888888888888888888876 66666
Q ss_pred hHHHHH
Q 046930 122 SYTSLV 127 (965)
Q Consensus 122 ~~~~l~ 127 (965)
+++.+.
T Consensus 82 a~~Nl~ 87 (95)
T d1tjca_ 82 ANGNLK 87 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.90 E-value=9.1e-06 Score=77.38 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=72.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCCh
Q 046930 57 FCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRV 136 (965)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (965)
..+.|++++|+..|+..++.+ |.+...+..++..|+..|++++|+..|+++.+.. |.+...+..+..++...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~~---P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcccc
Confidence 456677777777777777777 7777777777777777777777777777777765 44444555555544333333
Q ss_pred hHHHHHHHHHHHCCCccchhhhhhHHhhhhhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 046930 137 NEVNELFVRMESEGLKFDVVFYSCWICGQMVDKGIKPDTVSYTILLDGFSKEGTIEKAVGILNKMIED 204 (965)
Q Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 204 (965)
+++...+..... .+-+++...+...+..+...|+.++|.+.++++.+.
T Consensus 81 ~~a~~~~~~~~~--------------------~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 81 KDFAQGAATAKV--------------------LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHTTSCCCEEC--------------------CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhc--------------------ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222111100000 001122333344445566677777777777777664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.88 E-value=9.4e-06 Score=77.27 Aligned_cols=124 Identities=15% Similarity=0.044 Sum_probs=97.8
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChh
Q 046930 22 IKRNDPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPE 101 (965)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 101 (965)
.+.|++++|+..|+++++.. |.+...+..++.+++..|++++|++.|+.+.+.+ |....++..++..+...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~---P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHhccccH
Confidence 57899999999999999977 6788999999999999999999999999999998 788888888888877666555
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMESEGL 151 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 151 (965)
++...+....... -+++...+...+..+...|+.++|.+.++++.+..+
T Consensus 82 ~a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 82 DFAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HHTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 5444333322211 122334555666778889999999999999988654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.85 E-value=0.00017 Score=63.74 Aligned_cols=73 Identities=12% Similarity=0.220 Sum_probs=64.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCCCCHhh
Q 046930 47 SFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISL----GALKPNVVS 122 (965)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 122 (965)
...+..++.++...|++++|+..++++++.+ |.+..+|..++.++.+.|++.+|++.|+++... -|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~---P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3567889999999999999999999999999 899999999999999999999999999998542 136777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.85 E-value=2.5e-05 Score=68.05 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=75.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCC---------chHHHHHHHHHHHhcCChhhHHHHHHHHHHcC----CCCCC
Q 046930 53 LVYSFCSQGNMSRAVEVLELMSDENVKYPF---------DNFVCSSVVSGFCKIGKPELAIGFFENAISLG----ALKPN 119 (965)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~ 119 (965)
.+..+...|++++|+..|+++++..+..|. ...+|+.++.+|...|++++|++.++++++.. ...++
T Consensus 15 ~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~ 94 (156)
T d2hr2a1 15 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 94 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccc
Confidence 366677788888888888888876543222 24678899999999999999999999998641 01122
Q ss_pred -----HhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 046930 120 -----VVSYTSLVIALCMLGRVNEVNELFVRMESE 149 (965)
Q Consensus 120 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 149 (965)
..+++.++.+|...|++++|+..|+++++.
T Consensus 95 ~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 95 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 225778899999999999999999998864
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.85 E-value=2.7e-05 Score=67.81 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=80.3
Q ss_pred hhhHHHHH--HHHHHccCCchHHHHHHHHHHHhCCCCCC----------HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 046930 10 SRFFDSLI--QGFCIKRNDPEKALLVLKDCLRNHGTLPS----------SFTFCSLVYSFCSQGNMSRAVEVLELMSDEN 77 (965)
Q Consensus 10 ~~~~~~l~--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (965)
..+|..+. ..+ ...|+|++|+..|.+++...+-.|+ ...+..++.+|...|++++|+..++.++...
T Consensus 7 a~a~~~l~~g~~~-~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 7 VGAYLALSDAQRQ-LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 85 (156)
T ss_dssp HHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence 34666664 444 5779999999999999986543332 3568889999999999999999999988642
Q ss_pred CC----CC----CchHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046930 78 VK----YP----FDNFVCSSVVSGFCKIGKPELAIGFFENAISL 113 (965)
Q Consensus 78 ~~----~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 113 (965)
+. .+ ....+++.++.+|...|++++|++.|+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 01 12346888999999999999999999999874
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=6e-05 Score=58.55 Aligned_cols=81 Identities=14% Similarity=0.050 Sum_probs=67.5
Q ss_pred chhhHHHHHHHHHHccCCchHHHHHHHHHHHhCCCC-----CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCc
Q 046930 9 QSRFFDSLIQGFCIKRNDPEKALLVLKDCLRNHGTL-----PSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFD 83 (965)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (965)
++.-|+.++..+ .+.|+++.|+..|.++++..+.. ....++..++.++.+.|++++|+..|+++++.+ |.+
T Consensus 4 saddc~~lG~~~-~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~---P~~ 79 (95)
T d1tjca_ 4 TAEDSFELGKVA-YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD---PEH 79 (95)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC
T ss_pred cHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC---cCC
Confidence 455678889887 79999999999999998754221 125678899999999999999999999999999 888
Q ss_pred hHHHHHHHHH
Q 046930 84 NFVCSSVVSG 93 (965)
Q Consensus 84 ~~~~~~l~~~ 93 (965)
+.+++.+...
T Consensus 80 ~~a~~Nl~~~ 89 (95)
T d1tjca_ 80 QRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.022 Score=55.11 Aligned_cols=145 Identities=9% Similarity=0.068 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHcCCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 046930 278 PSIVTYNTIINGLCKVGRTSDAEEVSKGILGDVVTYSTLLHGYIEEDNVNGILETKQRLEEAGIQMDIVMCNILIKALFM 357 (965)
Q Consensus 278 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (965)
|+..-...++..|.+.|.++.|..++..+. -|..++..+.+.++++.|.+.+.+. .+..+|..+...+.+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 81 (336)
T ss_dssp C----------------CTTTHHHHHHHTT----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHh
Confidence 344444556666667777777777765433 2445556666777777776666543 256678888888877
Q ss_pred cCCHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 046930 358 VGALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCIINGLCKSGMVDMATEVF 437 (965)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (965)
.....-+.. .......++.....++..|...|.+++.+.+++......+.+...++.++.+|++.+ .++-.+.+
T Consensus 82 ~~e~~la~i-----~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l 155 (336)
T d1b89a_ 82 GKEFRLAQM-----CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL 155 (336)
T ss_dssp TTCHHHHHH-----TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CcHHHHHHH-----HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence 766544322 122223455556678888899999999999999887777778888888998888764 34444443
Q ss_pred H
Q 046930 438 I 438 (965)
Q Consensus 438 ~ 438 (965)
+
T Consensus 156 ~ 156 (336)
T d1b89a_ 156 E 156 (336)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.05 E-value=0.0051 Score=50.88 Aligned_cols=110 Identities=17% Similarity=0.105 Sum_probs=86.4
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHh----cCChh
Q 046930 26 DPEKALLVLKDCLRNHGTLPSSFTFCSLVYSFCSQGNMSRAVEVLELMSDENVKYPFDNFVCSSVVSGFCK----IGKPE 101 (965)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 101 (965)
|+++|+..|+++.... ++..+..++. ....+.++|++.|++..+.+ ++.+...++..|.. ..++.
T Consensus 8 d~~~A~~~~~kaa~~g----~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-----~~~a~~~Lg~~y~~g~~~~~d~~ 76 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN----EMFGCLSLVS--NSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLR 76 (133)
T ss_dssp HHHHHHHHHHHHHHTT----CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHHCC----Chhhhhhhcc--ccccCHHHHHHHHhhhhccc-----chhhhhhHHHhhhhccccchhhH
Confidence 6789999999988643 3344445543 35578999999999998876 45778889988876 45789
Q ss_pred hHHHHHHHHHHcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 046930 102 LAIGFFENAISLGALKPNVVSYTSLVIALCM----LGRVNEVNELFVRMESEG 150 (965)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 150 (965)
+|+++|+++.+.+ ++.+...++..|.. ..+.++|..+|++..+.|
T Consensus 77 ~A~~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 77 KAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhccC----cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 9999999999854 67778888888876 468999999999998765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.87 E-value=0.013 Score=48.26 Aligned_cols=80 Identities=10% Similarity=-0.129 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHh----cCC
Q 046930 705 GQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCK----FGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQ----KGD 776 (965)
Q Consensus 705 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 776 (965)
.+.++|+++|++..+.| ++.....|+..|.. ..+.++|+++|++..+.| ++.+...|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34445555555544433 33334444444433 223445555555544432 22233333333322 234
Q ss_pred HHHHHHHHHHhHhC
Q 046930 777 MEGALGFFLDFNTK 790 (965)
Q Consensus 777 ~~~A~~~~~~~~~~ 790 (965)
.++|+++|++..+.
T Consensus 111 ~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 111 EKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 44455555544443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.53 Score=47.97 Aligned_cols=72 Identities=11% Similarity=-0.050 Sum_probs=40.1
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046930 71 ELMSDENVKYPFDNFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPNVVSYTSLVIALCMLGRVNEVNELFVRMES 148 (965)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 148 (965)
..+++.++.+|........-...+.+.+++...+..|. . .|.+...-...+.+....|+.++|...+..+-.
T Consensus 59 ~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~----~--~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~ 130 (450)
T d1qsaa1 59 TNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP----E--KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL 130 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC----S--CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc----C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 34445554334444444445556666677655444332 1 244555555666677777777777766665543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.045 Score=42.98 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=58.6
Q ss_pred CCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCC
Q 046930 44 LPSSFTFCSLVYSFCSQG---NMSRAVEVLELMSDENVKYPFD-NFVCSSVVSGFCKIGKPELAIGFFENAISLGALKPN 119 (965)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 119 (965)
.++..+-...+-++.++. +.++++.+|+.+...+ |.+ .++++.++-+|.+.|++++|+..++++++.. |.+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~---p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie--P~n 106 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RNN 106 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC--CCc
Confidence 355666666676677654 5679999999999877 544 4789999999999999999999999999976 555
Q ss_pred HhhH
Q 046930 120 VVSY 123 (965)
Q Consensus 120 ~~~~ 123 (965)
..+.
T Consensus 107 ~qA~ 110 (124)
T d2pqrb1 107 KQVG 110 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=1.3 Score=44.83 Aligned_cols=139 Identities=9% Similarity=-0.099 Sum_probs=80.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCChHHH
Q 046930 631 LCREGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERIDMVPSEVSYATLIYNLCKEGQLLDA 710 (965)
Q Consensus 631 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 710 (965)
....+++..+...+..+... .........-+++++...|+.++|...|..+.. .++ -|..|.. .+.|..-.
T Consensus 295 al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg~~~~- 365 (450)
T d1qsaa1 295 ALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAA--QRIGEEYE- 365 (450)
T ss_dssp HHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHH--HHTTCCCC-
T ss_pred HHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHH--HHcCCCCC-
Confidence 34556777777777766432 222344456677888888888888888887754 132 2333331 12221100
Q ss_pred HHHHHHHHHCCCC--CChh----hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 046930 711 KKLFDRMVLKGFK--PSTR----IYNSFIDGYCKFGQLEEAFKFLHDLKINCLEPDKFTVSAVINGFCQKGDMEGALGFF 784 (965)
Q Consensus 711 ~~~~~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (965)
+.....+ +... .-...+..+...|+..+|...+..+... .+......++....+.|.++.|+...
T Consensus 366 ------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~ 436 (450)
T d1qsaa1 366 ------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (450)
T ss_dssp ------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHH
Confidence 0000000 0000 0113355677889999999888887753 24445556677777889999999887
Q ss_pred HHh
Q 046930 785 LDF 787 (965)
Q Consensus 785 ~~~ 787 (965)
.+.
T Consensus 437 ~~~ 439 (450)
T d1qsaa1 437 IAG 439 (450)
T ss_dssp HHT
T ss_pred HHH
Confidence 775
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.36 E-value=0.075 Score=41.67 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=47.5
Q ss_pred CCChhHHHHHHHHHHhcC---CHHHHHHHHHHhHhCCCCCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046930 758 EPDKFTVSAVINGFCQKG---DMEGALGFFLDFNTKGVSPDF--LGFLYLVKGLCTKGRMEEARSILREMLQ 824 (965)
Q Consensus 758 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 824 (965)
.|...+--..++++.+.. +.++++.+++++.. ..|+. ..++.|+.+|.+.|++++|..+++++++
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~--~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555556677776553 55688889888865 34543 3467799999999999999999999998
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.99 E-value=0.52 Score=36.20 Aligned_cols=84 Identities=15% Similarity=0.037 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHhHHHHH
Q 046930 188 EGTIEKAVGILNKMIEDRLRPNLITYTAIIFGFCKKGKLEEAFTVFKKVEDLGLVADEFVYATLIDGVCRRGDLDCAFRL 267 (965)
Q Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 267 (965)
.++.......+-.+- .+.......+..+.++|+-+.-.++++.+.+.+ .+++.....+..+|.+.|+..++-.+
T Consensus 69 C~Nlk~vv~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nel 142 (161)
T d1wy6a1 69 CQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTL 142 (161)
T ss_dssp CSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 444444444444332 144555666778888888888888888877755 77788888888888888888888888
Q ss_pred HHHHHHCCCC
Q 046930 268 LEDMEKKGIK 277 (965)
Q Consensus 268 ~~~~~~~g~~ 277 (965)
+.+.-++|..
T Consensus 143 l~~ACe~G~K 152 (161)
T d1wy6a1 143 LIEACKKGEK 152 (161)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHHhHH
Confidence 8888887764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.40 E-value=1.7 Score=33.25 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-CC----------------CCCHhhHHH
Q 046930 634 EGYVNKALDLCAFAKNKGITVNIVTYNTVIHSLCRQGCFVEAFRLFDSLERI-DM----------------VPSEVSYAT 696 (965)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~----------------~~~~~~~~~ 696 (965)
.|.+++..++..+..... +..-||..+--....-+-+-..++++..-+. ++ ..+...+..
T Consensus 15 dG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vdl 91 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 91 (161)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHHH
Confidence 466666667666665531 3344444444333333444444444433221 00 011122233
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 046930 697 LIYNLCKEGQLLDAKKLFDRMVLKGFKPSTRIYNSFIDGYCKFGQLEEAFKFLHDLKINC 756 (965)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 756 (965)
.++.+..+|+-++--++++.+.+.+ .+++.....++.+|.+.|...++-+++.++-+.|
T Consensus 92 ALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 92 ALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3344444444444444444444422 4444444444444444454444444444444433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.70 E-value=6.4 Score=28.50 Aligned_cols=61 Identities=11% Similarity=0.173 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHchhCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 046930 360 ALEDARALYQAMPEMNLVANSVTYSTMIDGYCKLGRIEEALEIFDELRRMSISSVACYNCI 420 (965)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 420 (965)
+.-+..+-+..+...++.|++.+...-+.+|-+.+++..|+++|+.+......+...|..+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yi 81 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 81 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4456666677777777888888888888888888888888888888776633333344444
|