Citrus Sinensis ID: 046948

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MNGQNIKIDHHCYRDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYTNWKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTDNLKPTAVHQINEISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDELRSVVEFALECPNFSF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEcccccccccccccccccccccccccccEEEEEEEEccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEccccccccccHHccccccEEEEEcccccccccccccccccccccEEcccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mngqnikidhhcyrddheaddrqlpgfrfhptdeELVGFYLrrkvdkkplsIELIKQidiykhdpwdlpkisstpdnegyffckrgrkyrnsvrpnrvtgsgfwkatgidkpvysdggegqdciGLKKTLVYYRgtagkgtktdwmmnefrlpsddrsgntnvtnakttlpeaEVWTICRVFKrnvssrkytnwkeqssarrqssvtelpsatitystesnnqeeayisfenpgihrhtdnlkptAVHQINEisqfssveqlsgnipsnpyesmasssshphangndfhelfTQENWDELRSVVEFAlecpnfsf
Flexible Loop (DISEMBL)
MNGQNIKIDHHCYRDDHEADDRQLPGFRFHPTDEELVGFylrrkvdkkplSIELIkqidiykhdpwdlpkisstpdnegyffckrgrkyrnsvrpnrvtgsgfwkatgidkpvysdggegQDCIGLKKTLVYYRGTagkgtktdwmmnefrlpsddrsgntnvtnakttlpeaevwtICRVfkrnvssrkytnwkeqssarrqssvtelpSATItystesnnqEEAYISFENPGIHRHTDNLKPTAVHQINEISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDELRSVVEFALECPNFSF
Low Complexity Region (SEG)
MNGQNIKIDHHCYRDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYTNWKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTDNLKPTAVHQINEISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDELRSVVEFALECPNFSF
Disordered region (IsUnstruct)
**********HCY**********LPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEF*****************TTLPEAEVWTICRVFKRNVSSRKY************************************************************************************************FHELFTQENWDELRSVVEFALEC*****
Disordered Region (DISOPRED)
*************************GFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDD*****************EVWTICRVFK************************************************************************************************************FTQENWDELRSVVEFALE******
Disordered Region (DISEMBL)
MNGQNIKIDHHCYRDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSS*********************PSATITYSTESNNQEEAYISFENPGIHRHTDNLKPTAVHQINEISQFSSVEQLSGNIPSNP************ANGNDFHELFTQENWDELRSVVEFALECPNFSF
Disordered Region (DISPRO)
********************DRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSD**************LPEAEVWTICRVFKRNV******************************************************************************************************HELFTQENWDELRSVVEFALECPNFSF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNGQNIKIDHHCYRDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYTNWKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTDNLKPTAVHQINEISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDELRSVVEFALECPNFSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q9SK55	275	Transcription factor JUNG	no	no	0.790	0.905	0.478	2e-66
Q9ZVH0	418	Protein FEZ OS=Arabidopsi	no	no	0.638	0.480	0.535	4e-58
Q9FIW5	337	Putative NAC domain-conta	no	no	0.536	0.501	0.572	2e-57
A0SPJ4	405	NAC transcription factor	N/A	no	0.669	0.520	0.411	9e-44
A0SPJ6	396	NAC transcription factor	N/A	no	0.679	0.540	0.398	1e-41
A0SPJ9	402	NAC transcription factor	N/A	no	0.679	0.532	0.398	2e-41
Q8GY42	323	NAC transcription factor	no	no	0.514	0.501	0.476	4e-41
Q52QH4	318	NAC domain-containing pro	no	no	0.520	0.515	0.479	5e-41
A0SPJ8	406	NAC transcription factor	N/A	no	0.606	0.470	0.415	2e-40
A0SPJ3	405	NAC transcription factor	N/A	no	0.669	0.520	0.402	2e-40

>sp|Q9SK55|NAC42_ARATH Transcription factor JUNGBRUNNEN 1 OS=Arabidopsis thaliana GN=JUB1 PE=1 SV=1

 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 182/305 (59%), Gaps = 56/305 (18%)

Query: 14  RDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISS 73
           +D  E ++  LPGFRFHPTDEEL+G+YLRRKV+ K + +ELIKQIDIYK+DPWDLP++SS
Sbjct: 9   KDHEEENEAPLPGFRFHPTDEELLGYYLRRKVENKTIKLELIKQIDIYKYDPWDLPRVSS 68

Query: 74  TPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYY 133
             + E YFFC RGRKYRNSVRPNRVTGSGFWKATGIDKPVYS+     DC+GLKK+LVYY
Sbjct: 69  VGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSN----LDCVGLKKSLVYY 124

Query: 134 RGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYTN 193
            G+AGKGTKTDWMM+EFRLPS         T   +   +AEVWT+CR+FKR  S R  T 
Sbjct: 125 LGSAGKGTKTDWMMHEFRLPS--------TTKTDSPAQQAEVWTLCRIFKRVTSQRNPT- 175

Query: 194 WKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTDNLKPTAVHQINEI 253
                   R+  +T   + + T S +S++             HR  D++           
Sbjct: 176 ---ILPPNRKPVITLTDTCSKTSSLDSDHTS-----------HRTVDSM----------- 210

Query: 254 SQFSSVEQLSGNIPSNPY-ESMASSSSHPHANGNDFHELFTQEN------------WDEL 300
           S    + Q     P NPY        + P   GND + L +  N            WDEL
Sbjct: 211 SHEPPLPQ-----PQNPYWNQHIVGFNQPTYTGNDNNLLMSFWNGNGGDFIGDSASWDEL 265

Query: 301 RSVVE 305
           RSV++
Sbjct: 266 RSVID 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVH0|FEZ_ARATH Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1

 Score =  225 bits (573), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 114/213 (53%), Positives = 142/213 (66%), Gaps = 12/213 (5%)

Query: 16  DHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTP 75
           D + +D  LPGFRFHPTDEELV FYL+RKV   PLSIELI+Q+DIYK+DPWDLPK + T 
Sbjct: 9   DQKMEDVLLPGFRFHPTDEELVSFYLKRKVQHNPLSIELIRQLDIYKYDPWDLPKFAMTG 68

Query: 76  DNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRG 135
           + E YF+C R RKYRNS RPNRVTG+GFWKATG D+P+YS   EG  CIGLKK+LV+Y+G
Sbjct: 69  EKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYS--SEGNKCIGLKKSLVFYKG 126

Query: 136 TAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKR-NVSSRKYTNW 194
            A KG KTDWMM+EFRLPS       +     + +   + W ICR+FK+ N ++ +    
Sbjct: 127 RAAKGVKTDWMMHEFRLPSLSEPSPPSKRFFDSPVSPNDSWAICRIFKKTNTTTLR---- 182

Query: 195 KEQSSARRQSSVTELPSATITYSTESNNQEEAY 227
                A   S V+ LP  T T +  +  Q   Y
Sbjct: 183 -----ALSHSFVSSLPPETSTDTMSNQKQSNTY 210

Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIW5|NAC94_ARATH Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=4 SV=1

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/185 (57%), Positives = 131/185 (70%), Gaps = 16/185 (8%)

Query: 20  DDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEG 79
           DD  LPGFRFHPTDEELV FYL+RKV  K L  +LIK++DIYK+DPWDLPK+++  + E 
Sbjct: 17  DDVVLPGFRFHPTDEELVSFYLKRKVLHKSLPFDLIKKVDIYKYDPWDLPKLAAMGEKEW 76

Query: 80  YFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGK 139
           YF+C R RKYRNS RPNRVTG GFWKATG D+P+YS   +   CIGLKK+LV+YRG A K
Sbjct: 77  YFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYS--LDSTRCIGLKKSLVFYRGRAAK 134

Query: 140 GTKTDWMMNEFRLPS------------DDRSGNTNVTNAKTTLPEAEVWTICRVFKRN-- 185
           G KTDWMM+EFRLPS            +++  + N  N    LP  + W ICR+FK+   
Sbjct: 135 GVKTDWMMHEFRLPSLSDSHHSSYPNYNNKKQHLNNNNNSKELPSNDAWAICRIFKKTNA 194

Query: 186 VSSRK 190
           VSS++
Sbjct: 195 VSSQR 199

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score =  177 bits (449), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 95/231 (41%), Positives = 137/231 (59%), Gaps = 20/231 (8%)

Query: 25  PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
           PGFRFHPTDEELV  YL++K DK PL + +I ++D+YK DPW+LP+ ++  + E YFF  
Sbjct: 36  PGFRFHPTDEELVVHYLKKKADKAPLPVNIIAEVDLYKFDPWELPEKATIGEQEWYFFSP 95

Query: 85  RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDG---GEGQDCIGLKKTLVYYRGTAGKGT 141
           R RKY N  RPNR   SG+WKATG DKP+ + G   G  ++ +G+KK LV+YRG   KG 
Sbjct: 96  RDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGKPPKGL 155

Query: 142 KTDWMMNEFRLPSDDRSGNTNVTN----------AKTTLPEAEVWTICRVFKRNVSSRKY 191
           KT+W+M+E+RL   D SG+T  TN          A  +L   + W +CR++K+     K 
Sbjct: 156 KTNWIMHEYRL--TDASGSTTATNRPPPVTGGSRAAASL-RLDDWVLCRIYKK---INKA 209

Query: 192 TNWKEQSSARRQSSVTELPSATITYSTESNNQEEAYIS-FENPGIHRHTDN 241
               +Q +   + SV +  +A   Y+T       A+ S + +P +  H D+
Sbjct: 210 AAGDQQRNTECEDSVEDAVTAYPLYATAGMTGAGAHGSNYASPSLLHHQDS 260

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 131/226 (57%), Gaps = 12/226 (5%)

Query: 25  PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
           PGFRFHPTDEELV  YL++K  K PL + +I ++D+YK DPW+LP+ ++  + E YFF  
Sbjct: 30  PGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEVDLYKFDPWELPEKATFGEQEWYFFSP 89

Query: 85  RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
           R RKY N  RPNR   SG+WKATG DKP+ + G  G++ +G+KK LV+YRG   KG KT+
Sbjct: 90  RDRKYPNGARPNRAATSGYWKATGTDKPILASGC-GREKVGVKKALVFYRGKPPKGLKTN 148

Query: 145 WMMNEFRLPSDDRSGNTN-----VTNAKTTLPEAEVWTICRVFKRNVSSRKYTNWKEQSS 199
           W+M+E+RL     S  T+        +++     + W +CR++K+     K     +Q S
Sbjct: 149 WIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRIYKK---INKAAAGDQQRS 205

Query: 200 ARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHR---HTDNL 242
              + SV +  +A   Y+T       A+ S  +  +H    H DN 
Sbjct: 206 MECEDSVEDAVTAYPLYATAGMTGAGAHGSNYDSLLHHQDSHEDNF 251

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 129/226 (57%), Gaps = 12/226 (5%)

Query: 25  PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
           PGFRFHPTDEELV  YL++K  K PL + +I ++D+YK DPW+LP+ ++  + E YFF  
Sbjct: 30  PGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYFFSP 89

Query: 85  RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
           R RKY N  RPNR   SG+WKATG DKP+ + G  G++ +G+K  LV+YRG   KG KT+
Sbjct: 90  RDRKYPNGARPNRAATSGYWKATGTDKPILASGC-GREKVGVKXALVFYRGKPPKGLKTN 148

Query: 145 WMMNEFRLPSDDRSGNTN-----VTNAKTTLPEAEVWTICRVFKRNVSSRKYTNWKEQSS 199
           W+M+E+RL     S  T+        ++      + W +CR++K+     K     +Q S
Sbjct: 149 WIMHEYRLTDASSSAATSRPPPVTGGSRAASLRLDDWVLCRIYKK---INKAAAADQQRS 205

Query: 200 ARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHR---HTDNL 242
              + SV +  +A   Y+T     E A+ S     +H    H DN 
Sbjct: 206 MECEDSVEDAVTAYPPYATACMTGEGAHGSNYASLLHHQDSHEDNF 251

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score =  168 bits (426), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 109/168 (64%), Gaps = 6/168 (3%)

Query: 25  PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
           PGFRFHPTDEELV  YL++K D  PL + +I +ID+YK DPW+LP  +S  ++E YFF  
Sbjct: 18  PGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYFFSP 77

Query: 85  RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
           R RKY N VRPNR   SG+WKATG DKP+++        +G+KK LV+Y G   KG KTD
Sbjct: 78  RDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHK---VGVKKALVFYGGKPPKGIKTD 134

Query: 145 WMMNEFRLPSDDRSGNT---NVTNAKTTLPEAEVWTICRVFKRNVSSR 189
           W+M+E+RL   + S      ++T  +      + W +CR++K+N S R
Sbjct: 135 WIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQR 182

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  168 bits (425), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 107/171 (62%), Gaps = 7/171 (4%)

Query: 14  RDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISS 73
           R D EA+    PGFRFHPTDEELV  YL RKV ++PL + +I ++D+YK DPWDLP+ + 
Sbjct: 12  RRDAEAELNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKAL 71

Query: 74  TPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYY 133
               E YFF  R RKY N  RPNR  G G+WKATG DKPV   G      +G+KK LV+Y
Sbjct: 72  FGRKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSA--RTVGIKKALVFY 129

Query: 134 RGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKR 184
            G A +G KTDW+M+E+RL   DR+      + K      + W +CR++ +
Sbjct: 130 SGKAPRGVKTDWIMHEYRLADADRAPGGKKGSQKL-----DEWVLCRLYNK 175

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 118/200 (59%), Gaps = 9/200 (4%)

Query: 25  PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
           PGFRFHPTDEELV  YL++K  K PL + +I ++D+YK DPW+LP+ ++  ++E YFF  
Sbjct: 37  PGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFFSP 96

Query: 85  RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDG-GEGQDCIGLKKTLVYYRGTAGKGTKT 143
           R RKY N  RPNR   SG+WKATG DKP+ +   G G++ +G+KK LV+YRG   +G KT
Sbjct: 97  RDRKYANGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGLKT 156

Query: 144 DWMMNEFRLPSDDRSGNTN-----VTNAKTTLPEAEV--WTICRVFKRNVSSRKYTNWKE 196
           +W+M+E+RL        T      VT          +  W +CR++K+   +       E
Sbjct: 157 NWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKTSKAAAAVG-DE 215

Query: 197 QSSARRQSSVTELPSATITY 216
           Q S   + SV +  +A   Y
Sbjct: 216 QRSMECEDSVEDAVTAYPPY 235

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A0SPJ3|NAMA1_TRIDB NAC transcription factor NAM-A1 OS=Triticum durum GN=NAM-A1 PE=2 SV=1

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 135/231 (58%), Gaps = 20/231 (8%)

Query: 25  PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
           PGFRFHPTDEELV  YL++K  K PL + +I ++D+YK DPW+LP+ ++  + E YFF  
Sbjct: 35  PGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYFFSP 94

Query: 85  RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDG---GEGQDCIGLKKTLVYYRGTAGKGT 141
           R RKY N  RPNR   SG+WKATG DKP+ + G   G  ++ +G+KK LV+YRG   KG 
Sbjct: 95  RDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGKPPKGL 154

Query: 142 KTDWMMNEFRLPSDDRSGNTNV----------TNAKTTLPEAEVWTICRVFKRNVSSRKY 191
           KT+W+M+E+RL   D SG+T            + A  +L   + W +CR++K+     K 
Sbjct: 155 KTNWIMHEYRL--TDVSGSTTTSRPPPPVTGGSRAAASL-RLDDWVLCRIYKK---INKA 208

Query: 192 TNWKEQSSARRQSSVTELPSATITYSTESNNQEEAYIS-FENPGIHRHTDN 241
               +Q S   + SV +  +A   Y+T       A+ S + +P +  H D+
Sbjct: 209 AAGDQQRSTECEDSVEDAVTAYPLYATAGMAGAGAHGSNYASPSLLHHQDS 259

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321).

Triticum durum (taxid: 4567)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
224094238	302	NAC domain protein, IPR003441 [Populus t	0.936	0.976	0.608	4e-95
255544674	299	NAC domain-containing protein, putative	0.895	0.943	0.616	1e-93
224081449	308	NAC domain protein, IPR003441 [Populus t	0.904	0.925	0.604	6e-91
359807002	318	uncharacterized protein LOC100790471 [Gl	0.946	0.937	0.568	2e-88
357494187	311	NAC domain protein IPR003441 [Medicago t	0.914	0.926	0.543	1e-79
225446795	298	PREDICTED: NAC domain-containing protein	0.917	0.969	0.546	2e-79
357451749	358	NAC domain-containing protein [Medicago	0.911	0.801	0.538	3e-79
225462151	276	PREDICTED: NAC domain-containing protein	0.860	0.981	0.556	3e-79
357451757	286	NAC domain protein [Medicago truncatula]	0.885	0.975	0.523	8e-79
296082752	284	unnamed protein product [Vitis vinifera]	0.857	0.950	0.553	7e-78

>gi|224094238|ref|XP_002310103.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222853006|gb|EEE90553.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 190/312 (60%), Positives = 233/312 (74%), Gaps = 17/312 (5%)

Query: 1   MNGQNIKIDHHCYRDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDI 60
           MN     I    Y+DD   ++ QLPGFRFHPTDEELVGFYLRRKVDKKPL+IELIKQ+DI
Sbjct: 1   MNNCQGHISSTNYKDDG-VEEAQLPGFRFHPTDEELVGFYLRRKVDKKPLNIELIKQVDI 59

Query: 61  YKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEG 120
           YK+DPWDLPK SS  DNEGYFFCKRGRKYRNS+RPNRVTGSGFWKATGIDKPVYS GGEG
Sbjct: 60  YKYDPWDLPKPSSVGDNEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSLGGEG 119

Query: 121 QDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLP-SDDRSGNTNVTNAKTTLPEAEVWTIC 179
           +DCIGLKKTLVYYRG+AGKGTKTDWMM+EFRLP SD+ + +T +  A+ +  EAEVWT+C
Sbjct: 120 RDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPTSDNNTSSTAIAKAEISPQEAEVWTLC 179

Query: 180 RVFKRNVSSRKYT-NWKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRH 238
           R+FKRNVS RKYT +W++ S+  +Q  +    S+ I    ESN ++E+Y+SF  P I +H
Sbjct: 180 RIFKRNVSYRKYTPDWRQLSTKCQQPPIDT--SSKICSPAESNYKQESYVSFGAPLI-QH 236

Query: 239 TDNLKPTAVHQINEISQFS-SVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENW 297
            DN+ P +    N I +    ++QLS +I   P  + +S+ S P+      HE+FT  +W
Sbjct: 237 YDNMPPGS----NAIERKPLHLDQLS-HIAQPPSMASSSNMSSPY-----IHEMFTHGDW 286

Query: 298 DELRSVVEFALE 309
           DELRSVVE A +
Sbjct: 287 DELRSVVECAFD 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544674|ref|XP_002513398.1| NAC domain-containing protein, putative [Ricinus communis] gi|223547306|gb|EEF48801.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 182/295 (61%), Positives = 222/295 (75%), Gaps = 13/295 (4%)

Query: 16  DHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTP 75
           D+  D+  LPGFRFHPTDEEL+GFYLRRKVDKKPL IELIKQ+DIYK+DPWDLPK SS  
Sbjct: 13  DYHDDEVALPGFRFHPTDEELIGFYLRRKVDKKPLRIELIKQVDIYKYDPWDLPKPSSVG 72

Query: 76  DNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRG 135
           D EGYFFCKRGRKYRNS+RPNRVTGSGFWKATGIDKPVYS+GGEG+DCIGLKKTLVYYRG
Sbjct: 73  DKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSNGGEGRDCIGLKKTLVYYRG 132

Query: 136 TAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYT-NW 194
           +AGKGTKTDWMM+EFRLP++D + N+   NAKT+ PEAEVWT+CR+FKRNVS RKYT +W
Sbjct: 133 SAGKGTKTDWMMHEFRLPTNDSNTNSPA-NAKTSAPEAEVWTLCRIFKRNVSHRKYTADW 191

Query: 195 KEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTDNLKPTAVHQINEIS 254
           +E S+  + +    + +++ T S +SN++E  Y+SF +P I       KP   H +NE  
Sbjct: 192 RELSTKHQPA----IDTSSKTCSVDSNSREN-YLSFGDPAI--QYSEKKPVFNH-VNERK 243

Query: 255 QFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDELRSVVEFALE 309
           QF   +QLS  +     +SM SSS       + +   F   +WDELRS+VEF  +
Sbjct: 244 QFYHADQLSSIVQP---QSMVSSSIISSNISSPYGNEFFSGDWDELRSIVEFTFD 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081449|ref|XP_002306415.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222855864|gb|EEE93411.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 180/298 (60%), Positives = 218/298 (73%), Gaps = 13/298 (4%)

Query: 13  YRDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKIS 72
           Y+DD + ++ QLPGFRFHPTDEELVGFYLRR VDKKPL IELIKQ++IYK+DPWDLPK S
Sbjct: 19  YKDDDDEEEVQLPGFRFHPTDEELVGFYLRRMVDKKPLRIELIKQVEIYKYDPWDLPKSS 78

Query: 73  STPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVY 132
              D EGYFFCKRGRKYRNS+RPNRVTGSGFWKATGIDKPV+S GGEG+D IGLKKTLVY
Sbjct: 79  CVGDKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVFSLGGEGRDSIGLKKTLVY 138

Query: 133 YRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYT 192
           YRG+AGKGTKTDWMM+EFRLP+ D S +T    AK +  EAEVWT+CR+FKRNVS RKYT
Sbjct: 139 YRGSAGKGTKTDWMMHEFRLPTKDNSTSTATVKAKISDQEAEVWTLCRIFKRNVSCRKYT 198

Query: 193 -NWKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTDNLKPTAVHQIN 251
            + K+ S+  +Q  +    S+ +    ESN  +E+Y++F  P I +H DN  P  VH + 
Sbjct: 199 PDLKQLSTTPQQPPIDT--SSKLCCQVESNYTQESYVNFGAPLI-QHYDNKPP--VHHVK 253

Query: 252 EISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDELRSVVEFALE 309
           E      V+QLS  +   P  SMASS +     GN   ++ T  +WDEL SVV+ A +
Sbjct: 254 ERKPL-HVDQLS-YVAQPP--SMASSLNISSPYGN---QILTHGDWDELTSVVDCAFD 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807002|ref|NP_001241333.1| uncharacterized protein LOC100790471 [Glycine max] gi|255641636|gb|ACU21090.1| unknown [Glycine max]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 183/322 (56%), Positives = 226/322 (70%), Gaps = 24/322 (7%)

Query: 4   QNIKIDHHCYRDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKH 63
           Q+I  DHH Y DD   DD  LPGFRFHPTDEELV FYL+RK+DKKP+SIELIKQIDIYK+
Sbjct: 9   QDIDYDHHEYVDD---DDVPLPGFRFHPTDEELVSFYLQRKLDKKPISIELIKQIDIYKY 65

Query: 64  DPWDLPKISSTP-DNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQD 122
           DPWDLPK S+T  + EGYFFC+RGRKYRNS+RPNRVTGSGFWKATGIDKPVYS GGEG D
Sbjct: 66  DPWDLPKTSATGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGND 125

Query: 123 CIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTL---PEAEVWTIC 179
           CIGLKKTLVYYRG+AGKG KTDWMM+EFRLPS+  + NTN+ ++K  +    EAE+WT+C
Sbjct: 126 CIGLKKTLVYYRGSAGKGIKTDWMMHEFRLPSNTDNNNTNLRSSKNYVDVPQEAEIWTLC 185

Query: 180 RVFKRNVSSRKYTNWKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHT 239
           R+FKRNVS RK+T   +Q SA+RQ S+ +  S        + NQ E+YI+F   G H H 
Sbjct: 186 RIFKRNVSQRKHTPDLKQISAKRQ-SIHDKSSRMSNVEFNTTNQ-ESYINF---GGHYHN 240

Query: 240 DNLKPTAVH-QINEISQFSSVEQLSGNIPSNPYESMASSSSHPHAN-------GNDFHEL 291
           +  KPT  +   ++ +Q+  +       P           + P +N       GNDF   
Sbjct: 241 EQ-KPTINYTNSDQRNQYHVMTHHQLCAPVAQQHQQPQQLTSPSSNFWINNPPGNDF--- 296

Query: 292 FTQENWDELRSVVEFALECPNF 313
           FT +NWDEL S+V+FA++ P+ 
Sbjct: 297 FTFDNWDELGSLVKFAVDSPSL 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494187|ref|XP_003617382.1| NAC domain protein IPR003441 [Medicago truncatula] gi|355518717|gb|AET00341.1| NAC domain protein IPR003441 [Medicago truncatula]

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/298 (54%), Positives = 206/298 (69%), Gaps = 10/298 (3%)

Query: 15  DDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISST 74
           DD + D+  LPGFRFHPTD+ELVGFYLRRKV+KKPL IELIK+IDIYK+DPWDLPK S+ 
Sbjct: 10  DDKKEDEVVLPGFRFHPTDDELVGFYLRRKVEKKPLRIELIKEIDIYKYDPWDLPKASTV 69

Query: 75  PDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYR 134
            + E YFFC RGRKYRNS+RPNRVTGSGFWKATGIDKP+Y    E  +CIGLKK+LVYYR
Sbjct: 70  GEKECYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIYC-VKESHECIGLKKSLVYYR 128

Query: 135 GTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYT-N 193
           G+AGKGTKTDWMM+EFRLP   ++ N  V N    + EAEVWT+CR+FKR  S +KYT N
Sbjct: 129 GSAGKGTKTDWMMHEFRLPPKGKTSNNQVLNHTNDVQEAEVWTLCRIFKRIPSYKKYTPN 188

Query: 194 WKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPG-IHRHTDNLKP-TAVHQIN 251
            K+ S A   ++ T   S++ T S +S+N +  Y++F N   + +     KP    H ++
Sbjct: 189 VKKDSEA---AAFTINSSSSKTCSLDSDNTKPQYLTFTNSQHVVQQNHETKPFINGHVVD 245

Query: 252 EISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDELRSVVEFALE 309
           +    S + QL GN    P  +++ SS     N  D  + F  ENWD+LRS+V+F  +
Sbjct: 246 QRFNNSFLNQL-GNAAQVPTTTLSHSSFWNDQNVLD--DAFANENWDDLRSIVQFTFD 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446795|ref|XP_002283251.1| PREDICTED: NAC domain-containing protein 42 [Vitis vinifera] gi|302143522|emb|CBI22083.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/309 (54%), Positives = 217/309 (70%), Gaps = 20/309 (6%)

Query: 6   IKIDHHCYRDDHEADDRQ--LPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKH 63
           ++++     D+ + DD +  LPGFRFHPTDEELVGFYLRRKV+KKP+S+ELIKQ+DIYK+
Sbjct: 1   MEVEKTSTLDNKKDDDEEVVLPGFRFHPTDEELVGFYLRRKVEKKPISLELIKQVDIYKY 60

Query: 64  DPWDLPKISS-TPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQD 122
           DPWDLP++S+   D E YFFC RGRKYRNS+RPNRVTGSGFWKATGIDKP+YS     + 
Sbjct: 61  DPWDLPRVSTNMGDREWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVEATNE- 119

Query: 123 CIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVF 182
           CIGLKK+LVYYRG+AGKGTKTDWMM+EFRLP   +   T   NAK    EAEVWT+CR+F
Sbjct: 120 CIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPGGK--GTYFPNAKNVTQEAEVWTLCRIF 177

Query: 183 KRNVSSRKYTNWKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTDNL 242
           KR+ + RKYT   + S + +Q +     S++ T S ES+N ++ Y+SFEN         +
Sbjct: 178 KRSPTYRKYTPEGKGSISNKQVATD---SSSKTCSLESDNNDK-YLSFENSTTRTKNSTV 233

Query: 243 KPTAVHQINEISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDELRS 302
             ++   I+E SQ   V Q+S  +  +PY    SS  +P  NGND  + FT  NWDELRS
Sbjct: 234 VDSS---IDERSQL-VVGQMSSFV--SPYSGPYSSFWNP--NGND--QFFTSGNWDELRS 283

Query: 303 VVEFALECP 311
           +VE A++ P
Sbjct: 284 IVESAIDPP 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451749|ref|XP_003596151.1| NAC domain-containing protein [Medicago truncatula] gi|355485199|gb|AES66402.1| NAC domain-containing protein [Medicago truncatula]

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/297 (53%), Positives = 205/297 (69%), Gaps = 10/297 (3%)

Query: 20  DDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTP--DN 77
           DD  LPGFRFHPTDEELV FYLRRK+DKKP++I+LIKQIDIYK+DPWDLPK ++ P  + 
Sbjct: 19  DDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPK-ANVPGAEK 77

Query: 78  EGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTA 137
           EGYFFC+RGRKYRNSVRPNRVTGSGFWKATGIDK +YS+G EG DC+GLKKTLVYYRG+A
Sbjct: 78  EGYFFCQRGRKYRNSVRPNRVTGSGFWKATGIDKAIYSNGAEGNDCVGLKKTLVYYRGSA 137

Query: 138 GKGTKTDWMMNEFRLPSDDRSGNTNVT---NAKTTLPEAEVWTICRVFKRNVSSRKYTNW 194
           GKGTKTDWMM+EFRLPS +    TN++   N      EAE+WT+CR+FKRNVS  K +  
Sbjct: 138 GKGTKTDWMMHEFRLPS-NIDAKTNISYPKNVADYAHEAEIWTLCRIFKRNVSKSK-SMA 195

Query: 195 KEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTDNLKPTAVHQINEIS 254
             +  A +  ++ E  S+ +  + E N  ++ YI+F       H ++ KP   H  ++  
Sbjct: 196 DVKPLATKHRTIHE-KSSRMNSNMELNTNQQTYINFGQTIHEHHYNDDKPINNHTSSDQR 254

Query: 255 QFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDELRSVVEFALECP 311
               V+QLS ++   P +   + SS+        +EL + +NWDEL SVV F  + P
Sbjct: 255 NQFHVDQLSSSVEYQPQQINVTQSSNFWIK-QAANELLSFDNWDELGSVVNFVSDSP 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462151|ref|XP_002265883.1| PREDICTED: NAC domain-containing protein 42 [Vitis vinifera]

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 168/302 (55%), Positives = 203/302 (67%), Gaps = 31/302 (10%)

Query: 16  DHEADDRQ--LPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISS 73
           D   DD Q  LPGFRFHPTDEELV FYLRRK++KKP+S ELIKQ+DIYK+DPWDLP  SS
Sbjct: 2   DATMDDEQVVLPGFRFHPTDEELVSFYLRRKIEKKPISFELIKQMDIYKYDPWDLPTNSS 61

Query: 74  TPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYY 133
             D E YFFCKRGRKYRNS+RPNRVTGSGFWKATGIDKP+YS  G G DC+GLKK+LVYY
Sbjct: 62  VTDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVQGRGHDCVGLKKSLVYY 121

Query: 134 RGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYT- 192
           RG+AGKGTKTDWMM+EFRLP+D ++   N T A     E E+WT+CR+FK+NVS RK T 
Sbjct: 122 RGSAGKGTKTDWMMHEFRLPADQKNTTHNATTADD---EVEIWTLCRIFKQNVSYRKSTP 178

Query: 193 NWKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTDNLKPTAV-HQIN 251
           +W+E S+ R+ +      S   T + +S N  E YISF  P      DN K   V H +N
Sbjct: 179 DWRETSAKRKPTK-----SRPKTGNMDSENW-EGYISFGAP---EALDNEKKLFVGHNMN 229

Query: 252 EISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDELRSVVEFALECP 311
           E +QF  V        S+P ES  S  S       +  E FT  NWDE+ S +++  +  
Sbjct: 230 ERNQFHVV--------SDP-ESCFSVLSE------EAREFFTNRNWDEILSAMDYDFDPY 274

Query: 312 NF 313
           +F
Sbjct: 275 HF 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451757|ref|XP_003596155.1| NAC domain protein [Medicago truncatula] gi|355485203|gb|AES66406.1| NAC domain protein [Medicago truncatula]

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 164/313 (52%), Positives = 207/313 (66%), Gaps = 34/313 (10%)

Query: 4   QNIKIDHHCYRDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKH 63
           ++  +D+    DD   DD  LPGFRFHPTDEELV FYLRRK+DKKP++I+LIKQIDIYK+
Sbjct: 5   EDFNMDNEYVVDD---DDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKY 61

Query: 64  DPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDC 123
           DPWDLP+     + EGYFFC+RGRKYRNSVRPNRVTGSGFWKATGIDK +YS+G EG DC
Sbjct: 62  DPWDLPR----AEKEGYFFCQRGRKYRNSVRPNRVTGSGFWKATGIDKAIYSNGAEGNDC 117

Query: 124 IGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVT---NAKTTLPEAEVWTICR 180
           +GLKKTLVYYRG+AGKGTKTDWMM+EFRLPS +    TN++   N      EAE+WT+CR
Sbjct: 118 VGLKKTLVYYRGSAGKGTKTDWMMHEFRLPS-NIDAKTNISYPRNDADYAHEAEIWTLCR 176

Query: 181 VFKRNVSSRKYTNWKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTD 240
           + KRNVS RK     +Q + + QS      S  +  + E N  ++ YI+F     H H  
Sbjct: 177 ILKRNVSQRKQIPEMKQLANKLQS--VHNTSTRMDNNMEFNINQQTYINFGASHEHHH-- 232

Query: 241 NLKPTAVHQINEISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDEL 300
                 VH+   ++ ++S +Q      SN +    S+  H  AN     EL   +NWDEL
Sbjct: 233 ------VHEDKPVNNYTSSDQ------SNQFH--GSNQFHEDAN-----ELLPFDNWDEL 273

Query: 301 RSVVEFALECPNF 313
            SVV FA++ P+ 
Sbjct: 274 GSVVRFAVDSPSL 286

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082752|emb|CBI21757.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (758), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 165/298 (55%), Positives = 203/298 (68%), Gaps = 28/298 (9%)

Query: 16  DHEADDRQ--LPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPK-IS 72
           D   DD Q  LPGFRFHPTDEELV FYL+RK++KK +SIE IKQIDIYK++PWDL K I+
Sbjct: 7   DATKDDDQVVLPGFRFHPTDEELVSFYLQRKIEKKLISIEFIKQIDIYKYEPWDLAKNIN 66

Query: 73  STPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVY 132
           +  D E YFFCKRGRKYRNS+RPNRVT SGFWKATGIDKP+YS+ GEG DCIGLKK+LVY
Sbjct: 67  TLTDKEWYFFCKRGRKYRNSIRPNRVTRSGFWKATGIDKPIYSNNGEGHDCIGLKKSLVY 126

Query: 133 YRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYT 192
           YRG+AGKGTKTDWMM+EFRLP++ +  NTN+ NAK    EAE+WT+CR+FKR+VS RKYT
Sbjct: 127 YRGSAGKGTKTDWMMHEFRLPANQK--NTNLPNAKAADQEAEIWTLCRIFKRDVSYRKYT 184

Query: 193 -NWKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTDNLKPTAVHQIN 251
            +W+E SSAR       + + T T   +S N E   ISF         D  KP   H ++
Sbjct: 185 PDWRE-SSARHNP----VNARTKTCDADSENLEYYNISFGASAA--LDDEKKPVVGHSMD 237

Query: 252 EISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENWDELRSVVEFALE 309
              Q         ++ S P ES ++  S       +  E FT  NWDE+ S ++FA +
Sbjct: 238 GRIQL--------HVGSEP-ESCSTVLSE------EAREFFTNGNWDEIVSAMDFAFD 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2089205	303	AT3G12910 [Arabidopsis thalian	0.892	0.927	0.514	1.4e-69
TAIR|locus:2045570	275	NAC042 "NAC domain containing	0.723	0.829	0.542	1.4e-66
TAIR|locus:2202820	418	FEZ "FEZ" [Arabidopsis thalian	0.812	0.612	0.452	6.6e-58
TAIR|locus:2056266	414	LOV1 "LONG VEGETATIVE PHASE 1"	0.530	0.403	0.483	1.4e-44
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.517	0.509	0.506	4.5e-43
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.904	0.882	0.345	1.7e-41
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.536	0.464	0.474	2.8e-41
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.714	0.839	0.4	7.5e-41
TAIR|locus:2160634	312	NAC102 "NAC domain containing	0.736	0.743	0.402	9.6e-41
TAIR|locus:504956335	283	ATAF2 [Arabidopsis thaliana (t	0.590	0.657	0.439	5.3e-40

TAIR|locus:2089205 AT3G12910 [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 159/309 (51%), Positives = 197/309 (63%)

Query:    14 RDDHEADDRQLPGFRFHPTDEELVGFYLRRKVD-KKPLSI-ELIKQIDIYKHDPWDLPKI 71
             R+  + D  +LPGFRFHPTDEELVG+YL +KV  KK   I E++ QIDIYK DPWDLP+ 
Sbjct:    12 RESEDEDALKLPGFRFHPTDEELVGYYLSKKVLLKKTSKIDEIVSQIDIYKFDPWDLPRS 71

Query:    72 SSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLV 131
              +T + E YFFCKRGRKYRNS+RPNRVTGSGFWKATGIDKPVYSDG   +  IGLKKTLV
Sbjct:    72 RNT-EKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDGSN-KAVIGLKKTLV 129

Query:   132 YYRGTAGKGTKTDWMMNEFRLPS-DDR--SGNTNVTNAKTTLPEAEVWTICRVFKRNVSS 188
             YY G+AGKG KTDWMM+EFRLP+ +D    G T+     T+L  AEVWT+CR+FKR VSS
Sbjct:   130 YYLGSAGKGNKTDWMMHEFRLPTANDTIPGGPTHSNPTPTSLLHAEVWTLCRIFKRTVSS 189

Query:   189 RKYT-NWKEQSSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTD--NLKPT 245
             RKYT +W+E ++ +R                + +N +EAYI+F +      T+  N++  
Sbjct:   190 RKYTPDWRELANGKRVKQ-------------QQSNYQEAYINFGDNESSSSTNVMNVREG 236

Query:   246 AVHQINEISQFSSVEQLSGNIPSNPYESMASSSSHPHANGNDFHELFTQENW-DELRSVV 304
               +    + Q         N P     +   S  H  +N N  HE  T E W DELRSVV
Sbjct:   237 KGNYERSVFQLQQTPYQHQNQPILMDTTHVDSFQH-FSNDNIHHE--TYETWPDELRSVV 293

Query:   305 EFALECPNF 313
             EFA   P+F
Sbjct:   294 EFAFP-PSF 301

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2045570 NAC042 "NAC domain containing protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 134/247 (54%), Positives = 165/247 (66%)

Query:    14 RDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISS 73
             +D  E ++  LPGFRFHPTDEEL+G+YLRRKV+ K + +ELIKQIDIYK+DPWDLP++SS
Sbjct:     9 KDHEEENEAPLPGFRFHPTDEELLGYYLRRKVENKTIKLELIKQIDIYKYDPWDLPRVSS 68

Query:    74 TPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYY 133
               + E YFFC RGRKYRNSVRPNRVTGSGFWKATGIDKPVYS+     DC+GLKK+LVYY
Sbjct:    69 VGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSN----LDCVGLKKSLVYY 124

Query:   134 RGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYT- 192
              G+AGKGTKTDWMM+EFRLPS         T   +   +AEVWT+CR+FKR  S R  T 
Sbjct:   125 LGSAGKGTKTDWMMHEFRLPS--------TTKTDSPAQQAEVWTLCRIFKRVTSQRNPTI 176

Query:   193 ---NWKEQSSARRQSSVTE-LPSATITYST-ESNNQEEAYISFENPGIHRHTDNL-KPTA 246
                N K   +     S T  L S   ++ T +S + E      +NP  ++H     +PT 
Sbjct:   177 LPPNRKPVITLTDTCSKTSSLDSDHTSHRTVDSMSHEPPLPQPQNPYWNQHIVGFNQPTY 236

Query:   247 VHQINEI 253
                 N +
Sbjct:   237 TGNDNNL 243

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0005992 "trehalose biosynthetic process" evidence=IMP

GO:0006561 "proline biosynthetic process" evidence=IMP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:1900056 "negative regulation of leaf senescence" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2202820 FEZ "FEZ" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 120/265 (45%), Positives = 167/265 (63%)

Query:    16 DHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTP 75
             D + +D  LPGFRFHPTDEELV FYL+RKV   PLSIELI+Q+DIYK+DPWDLPK + T 
Sbjct:     9 DQKMEDVLLPGFRFHPTDEELVSFYLKRKVQHNPLSIELIRQLDIYKYDPWDLPKFAMTG 68

Query:    76 DNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRG 135
             + E YF+C R RKYRNS RPNRVTG+GFWKATG D+P+YS   EG  CIGLKK+LV+Y+G
Sbjct:    69 EKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSS--EGNKCIGLKKSLVFYKG 126

Query:   136 TAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKR-NVSSRKYTNW 194
              A KG KTDWMM+EFRLPS       +     + +   + W ICR+FK+ N ++ +  + 
Sbjct:   127 RAAKGVKTDWMMHEFRLPSLSEPSPPSKRFFDSPVSPNDSWAICRIFKKTNTTTLRALSH 186

Query:   195 KEQSSARRQSSVTELP----SATITYSTESNNQEEAYISFENPGIHRHTDNLKPTAVHQI 250
                SS   ++S   +     S T  +S++   +  ++  F +  ++  T     +    +
Sbjct:   187 SFVSSLPPETSTDTMSNQKQSNTYHFSSDKILKPSSHFQFHHENMN--TPKTSNSTTPSV 244

Query:   251 NEISQFSSVEQLSGNIPSNPYESMA 275
               IS FS ++  S + P+N +  ++
Sbjct:   245 PTISPFSYLDFTSYDKPTNVFNPVS 269

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0045770 "positive regulation of asymmetric cell division" evidence=IMP

GO:0048103 "somatic stem cell division" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2056266 LOV1 "LONG VEGETATIVE PHASE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 88/182 (48%), Positives = 121/182 (66%)

Query:     3 GQNIKIDHHCYRDDHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYK 62
             GQ   + +    DDH+  D  +PGFRFHPT+EEL+ FYLRRKV+ K  ++ELI  +D+Y+
Sbjct:    32 GQESHVQNEDEADDHD-HDMVMPGFRFHPTEEELIEFYLRRKVEGKRFNVELITFLDLYR 90

Query:    63 HDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQD 122
             +DPW+LP +++  + E YF+  R RKYRN  RPNRVT SG+WKATG D+ + S+      
Sbjct:    91 YDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSETSRP-- 148

Query:   123 CIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVF 182
              IGLKKTLV+Y G A KGT+T W+MNE+RLP  +               +AE+ ++CRV+
Sbjct:   149 -IGLKKTLVFYSGKAPKGTRTSWIMNEYRLPHHETE----------KYQKAEI-SLCRVY 196

Query:   183 KR 184
             KR
Sbjct:   197 KR 198

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 83/164 (50%), Positives = 109/164 (66%)

Query:    25 PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
             PGFRFHPTDEELV  YL+RK D  PL + +I  +D+YK DPW+LP  +S  + E YFF  
Sbjct:    19 PGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPWELPAKASFGEQEWYFFSP 78

Query:    85 RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
             R RKY N  RPNR   SG+WKATG DKPV S GG G   +G+KK LV+Y G   KG K+D
Sbjct:    79 RDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPKGVKSD 138

Query:   145 WMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSS 188
             W+M+E+RL  +  +   +  N K +L   + W +CR++K+N S+
Sbjct:   139 WIMHEYRLTDNKPTHICDFGNKKNSL-RLDDWVLCRIYKKNNST 181

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 107/310 (34%), Positives = 161/310 (51%)

Query:    25 PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
             PGFRFHPTDEELV  YL++K D  PL + +I +ID+YK DPW+LP  +S  ++E YFF  
Sbjct:    18 PGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYFFSP 77

Query:    85 RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
             R RKY N VRPNR   SG+WKATG DKP+++        +G+KK LV+Y G   KG KTD
Sbjct:    78 RDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHK---VGVKKALVFYGGKPPKGIKTD 134

Query:   145 WMMNEFRLPSDDRSGNTNVTNAKTTLPEA---EVWTICRVFKRNVSSRKYTN---WKEQ- 197
             W+M+E+RL   + S      +  TT   +   + W +CR++K+N S R        +E  
Sbjct:   135 WIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQRPTMERVLLREDL 194

Query:   198 -SSARRQSSVTELPSATITYSTESNNQEEAYISFENPGIHRHTDNL--KPTAVHQINEIS 254
                   +SS     ++ +  +  +NN  E +  F+   +     +L  +    H+ +  S
Sbjct:   195 MEGMLSKSSANSSSTSVLDNNDNNNNNNEEHF-FDGMVVSSDKRSLCGQYRMGHEASGSS 253

Query:   255 QFSSVEQL-----SGNIPSNPYE-SMASSSSH-PHANGNDFHELFTQENWDEL--RSVVE 305
              F S         +G++ ++ Y  S  S  S  P ++G  FH     +    L    V+ 
Sbjct:   254 SFGSFLSSKRFHHTGDLNNDNYNVSFVSMLSEIPQSSG--FHANGVMDTTSSLADHGVLR 311

Query:   306 FALECPNFSF 315
              A + PN ++
Sbjct:   312 QAFQLPNMNW 321

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 83/175 (47%), Positives = 113/175 (64%)

Query:    25 PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
             PGFRFHPTDEELV  YL+RK    PL + +I ++D+YK DPW+LP  +S  + E YFF  
Sbjct:    19 PGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYFFSP 78

Query:    85 RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
             R RKY N  RPNR   SG+WKATG DKPV +   +G   +G+KK LV+Y G   KG K+D
Sbjct:    79 RDRKYPNGARPNRAATSGYWKATGTDKPVLAS--DGNQKVGVKKALVFYSGKPPKGVKSD 136

Query:   145 WMMNEFRL---PSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYTNWKE 196
             W+M+E+RL     ++R    +  N K +L   + W +CR++K+N +SR   N K+
Sbjct:   137 WIMHEYRLIENKPNNRPPGCDFGNKKNSL-RLDDWVLCRIYKKNNASRHVDNDKD 190

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 96/240 (40%), Positives = 134/240 (55%)

Query:    25 PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
             PGFRFHPTDEEL+ +YLR +   KP  + +I ++DIYK DPW LP+ +   +NE YFF  
Sbjct:    11 PGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWYFFSP 70

Query:    85 RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
             R RKY N VRPNR   SG+WKATG DK ++S    G   +G+KK LV+Y+G   KG KTD
Sbjct:    71 RERKYPNGVRPNRAAVSGYWKATGTDKAIHS----GSSNVGVKKALVFYKGRPPKGIKTD 126

Query:   145 WMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYTNWKEQSSARRQS 204
             W+M+E+RL  D R  +T   N    L E   W +CR++K+  +S K  N  EQ     + 
Sbjct:   127 WIMHEYRL-HDSRKASTK-RNGSMRLDE---WVLCRIYKKRGAS-KLLN--EQEGFMDEV 178

Query:   205 SVTELPSATITYSTESNNQEEAYI--SFENPGIHRHTDNLKPTAVHQINEISQFSSVEQL 262
              + E  +  +    E   +EE  +  S + P        L+   +  ++ I  FS  + L
Sbjct:   179 -LMEDETKVVVNEAERRTEEEIMMMTSMKLPRTCSLAHLLEMDYMGPVSHIDNFSQFDHL 237

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2160634 NAC102 "NAC domain containing protein 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 103/256 (40%), Positives = 152/256 (59%)

Query:    24 LP-GFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFF 82
             LP GFRFHPTDEELV FYL R+   +P+++ +I +ID+YK +PW+LP+++   + E YFF
Sbjct:    50 LPAGFRFHPTDEELVKFYLCRRCASEPINVPVIAEIDLYKFNPWELPEMALYGEKEWYFF 109

Query:    83 CKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTK 142
               R RKY N  RPNR  G+G+WKATG DKP+    G+ +  +G+KK LV+Y G A KG K
Sbjct:   110 SHRDRKYPNGSRPNRAAGTGYWKATGADKPI----GKPKT-LGIKKALVFYAGKAPKGIK 164

Query:   143 TDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKYTNWK-EQSSAR 201
             T+W+M+E+RL + DRS +TN  N    L +   W +CR++ +  +  KY     E+ + +
Sbjct:   165 TNWIMHEYRLANVDRSASTNKKN-NLRLDD---WVLCRIYNKKGTMEKYLPAAAEKPTEK 220

Query:   202 RQSSVTELPSATITYS-TESNNQEEAYISFENPGIHRHTDNLKPTAVHQINE-ISQFSSV 259
               +S +   S  I+   T S+N E   +  E   I     NL+  A+   N+  S FSS+
Sbjct:   221 MSTSDSRCSSHVISPDVTCSDNWE---VESEPKWI-----NLED-ALEAFNDDTSMFSSI 271

Query:   260 EQLSGN--IPSNPYES 273
               L  +  +P   Y+S
Sbjct:   272 GLLQNDAFVPQFQYQS 287

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:504956335 ATAF2 [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 87/198 (43%), Positives = 125/198 (63%)

Query:    24 LP-GFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFF 82
             LP GFRFHPTDEELV FYL RK   + +S  +I +ID+YK +PW+LP++S   + E YFF
Sbjct:     7 LPAGFRFHPTDEELVKFYLCRKCASEQISAPVIAEIDLYKFNPWELPEMSLYGEKEWYFF 66

Query:    83 CKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTK 142
               R RKY N  RPNR  G+G+WKATG DKP+    G+ +  +G+KK LV+Y G A KG K
Sbjct:    67 SPRDRKYPNGSRPNRAAGTGYWKATGADKPI----GKPKT-LGIKKALVFYAGKAPKGIK 121

Query:   143 TDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRKY--TNWKEQSSA 200
             T+W+M+E+RL + DRS + N  N    L +   W +CR++ +  +  KY   + K +++ 
Sbjct:   122 TNWIMHEYRLANVDRSASVNKKN-NLRLDD---WVLCRIYNKKGTMEKYFPADEKPRTTT 177

Query:   201 RRQSSVTELPSATITYST 218
               + S +   ++  TY T
Sbjct:   178 MAEQSSSPFDTSDSTYPT 195

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009620 "response to fungus" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0043424 "protein histidine kinase binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC077 NAC domain protein, IPR003441 (308 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	8e-69

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  210 bits (536), Expect = 8e-69
 Identities = 80/132 (60%), Positives = 97/132 (73%), Gaps = 5/132 (3%)

Query: 24  LPGFRFHPTDEELVGFYLRRKVDKKPLSI-ELIKQIDIYKHDPWDLPK-ISSTPDNEGYF 81
            PGFRFHPTDEELV +YL+RKV  KPL + ++I ++DIYK +PWDLP   +   D E YF
Sbjct: 2   PPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWYF 61

Query: 82  FCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGT 141
           F  R RKY N  R NR TGSG+WKATG DKPV S GGE    +G+KKTLV+Y+G A KG 
Sbjct: 62  FSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGE---VVGMKKTLVFYKGRAPKGE 118

Query: 142 KTDWMMNEFRLP 153
           KTDW+M+E+RL 
Sbjct: 119 KTDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=2.1e-42  Score=290.97  Aligned_cols=128  Identities=51%  Similarity=0.976  Sum_probs=96.6

Q ss_pred             CCCCceecCChHHHHHHHHHHHHcCCCCCC-CceeeccCCCCCCCCCCCcCCCCCceEEEEeecccccCCCCCCcccccC
Q 046948           23 QLPGFRFHPTDEELVGFYLRRKVDKKPLSI-ELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGS  101 (315)
Q Consensus        23 lpPGfRF~PTDeELV~~YL~~Ki~g~plp~-~~I~~vDVY~~ePwdLp~~~~~ge~ewYFFs~r~rk~~~g~R~~R~tg~  101 (315)
                      |||||||+|||+|||.+||++|+.|.+++. .+|+++|||++|||+|++....++.+|||||++.+++.++.|.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            689999999999999999999999999987 8999999999999999954334667999999999999999999999999


Q ss_pred             ceEeeecCceeEEcCCCCCceeeEEEEEEEeeeccCCCCCCcCeeEEEEeCC
Q 046948          102 GFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLP  153 (315)
Q Consensus       102 G~WK~~G~~k~I~~~~g~~~~vIG~Kktl~Fy~g~~~~g~kT~W~MhEY~L~  153 (315)
                      |+||++|+.++|.+.   ++.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~---~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDP---GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE----TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccc---cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999986   3789999999999998888899999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		7e-38
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		8e-38
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		1e-35

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  154 bits (388), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 110/168 (65%), Gaps = 17/168 (10%)
Query: 25  PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
           PGFRF+PTDEEL+  YL RK      S++LI +ID+YK DPW LP  +   + E YFF  
Sbjct: 19  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 78
Query: 85  RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
           R RKY N  RPNRV GSG+WKATG DK + ++G      +G+KK LV+Y G A KGTKT+
Sbjct: 79  RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR----VGIKKALVFYIGKAPKGTKTN 134
Query: 145 WMMNEFRL--PSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRK 190
           W+M+E+RL  PS  R+G+T + +          W +CR++K+  S++K
Sbjct: 135 WIMHEYRLIEPS-RRNGSTKLDD----------WVLCRIYKKQSSAQK 171

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  154 bits (388), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 110/168 (65%), Gaps = 17/168 (10%)
Query: 25  PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
           PGFRF+PTDEEL+  YL RK      S++LI +ID+YK DPW LP  +   + E YFF  
Sbjct: 22  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 81
Query: 85  RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
           R RKY N  RPNRV GSG+WKATG DK + ++G      +G+KK LV+Y G A KGTKT+
Sbjct: 82  RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR----VGIKKALVFYIGKAPKGTKTN 137
Query: 145 WMMNEFRL--PSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRK 190
           W+M+E+RL  PS  R+G+T + +          W +CR++K+  S++K
Sbjct: 138 WIMHEYRLIEPS-RRNGSTKLDD----------WVLCRIYKKQSSAQK 174

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 102/170 (60%), Gaps = 8/170 (4%)
Query: 16  DHEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTP 75
           D EA+    PGFRFHPTD+ELV  YL RK   + L + +I ++D+YK DPWDLP+ +   
Sbjct: 8   DAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG 67
Query: 76  DNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRG 135
             E YFF  R RKY N  RPNR  G+G+WKATG DKPV   G      +G+KK LV+Y G
Sbjct: 68  AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG----RTLGIKKALVFYAG 123
Query: 136 TAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRN 185
            A +G KTDW+M+E+RL    R+       +       + W +CR++ + 
Sbjct: 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRL----DDWVLCRLYNKK 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-87
1ut7_A	171	No apical meristem protein; transcription regulati	1e-86

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  258 bits (661), Expect = 2e-87
 Identities = 76/166 (45%), Positives = 100/166 (60%), Gaps = 8/166 (4%)

Query: 25  PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
           PGFRFHPTD+ELV  YL RK   + L + +I ++D+YK DPWDLP+ +     E YFF  
Sbjct: 17  PGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTP 76

Query: 85  RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
           R RKY N  RPNR  G+G+WKATG DKPV   G      +G+KK LV+Y G A +G KTD
Sbjct: 77  RDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG----RTLGIKKALVFYAGKAPRGVKTD 132

Query: 145 WMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRK 190
           W+M+E+RL    R+       AK      + W +CR++ +     K
Sbjct: 133 WIMHEYRLADAGRAAA----GAKKGSLRLDDWVLCRLYNKKNEWEK 174

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  256 bits (656), Expect = 1e-86
 Identities = 77/166 (46%), Positives = 105/166 (63%), Gaps = 13/166 (7%)

Query: 25  PGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCK 84
           PGFRF+PTDEEL+  YL RK      S++LI +ID+YK DPW LP  +   + E YFF  
Sbjct: 19  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 78

Query: 85  RGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTD 144
           R RKY N  RPNRV GSG+WKATG DK + ++G      +G+KK LV+Y G A KGTKT+
Sbjct: 79  RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ----RVGIKKALVFYIGKAPKGTKTN 134

Query: 145 WMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKRNVSSRK 190
           W+M+E+RL    R   +          + + W +CR++K+  S++K
Sbjct: 135 WIMHEYRLIEPSRRNGS---------TKLDDWVLCRIYKKQSSAQK 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
1ut7_A	171	No apical meristem protein; transcription regulati	100.0
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=9.7e-55  Score=383.25  Aligned_cols=160  Identities=47%  Similarity=0.853  Sum_probs=132.6

Q ss_pred             CccCCCCCCCceecCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCCcCCCCCceEEEEeecccccCCCCCCc
Q 046948           17 HEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPN   96 (315)
Q Consensus        17 ~~~~~~lpPGfRF~PTDeELV~~YL~~Ki~g~plp~~~I~~vDVY~~ePwdLp~~~~~ge~ewYFFs~r~rk~~~g~R~~   96 (315)
                      ..++..|||||||+|||||||.+||++|+.|.+++..+|+++|||++|||+||+.+..++++|||||++.+|+++|.|++
T Consensus        11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~   90 (171)
T 1ut7_A           11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN   90 (171)
T ss_dssp             -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred             cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccc
Confidence            34567899999999999999999999999999999999999999999999999987778899999999999999999999


Q ss_pred             ccccCceEeeecCceeEEcCCCCCceeeEEEEEEEeeeccCCCCCCcCeeEEEEeCCCCCCCCCCccCCCCCCCCCCCce
Q 046948           97 RVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVW  176 (315)
Q Consensus        97 R~tg~G~WK~~G~~k~I~~~~g~~~~vIG~Kktl~Fy~g~~~~g~kT~W~MhEY~L~~~~~~~~~~~p~~~~~~~~~e~~  176 (315)
                      |+|++||||++|++++|...    +.+||+||+|+||+|+++++.||+|+||||+|......         ......++|
T Consensus        91 R~t~~G~Wk~tG~~k~I~~~----~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~---------~~~~~~~~~  157 (171)
T 1ut7_A           91 RVAGSGYWKATGTDKIISTE----GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR---------NGSTKLDDW  157 (171)
T ss_dssp             EEETTEEEEEEEEEEEEEET----TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------------CCE
T ss_pred             ccCCCCEEeccCCCceEEec----CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc---------cCcccCCCE
Confidence            99999999999999999975    48999999999999999999999999999999987531         011345789


Q ss_pred             EEEEEeeeCCCCC
Q 046948          177 TICRVFKRNVSSR  189 (315)
Q Consensus       177 VLCRIykk~~s~k  189 (315)
                      ||||||+|+.+.+
T Consensus       158 VlCrv~~k~~~~~  170 (171)
T 1ut7_A          158 VLCRIYKKQSSAQ  170 (171)
T ss_dssp             EEEEEEECC----
T ss_pred             EEEEEEEcCCCCC
Confidence            9999999987654

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.8e-54  Score=382.35  Aligned_cols=162  Identities=46%  Similarity=0.892  Sum_probs=135.9

Q ss_pred             CccCCCCCCCceecCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCCcCCCCCceEEEEeecccccCCCCCCc
Q 046948           17 HEADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPN   96 (315)
Q Consensus        17 ~~~~~~lpPGfRF~PTDeELV~~YL~~Ki~g~plp~~~I~~vDVY~~ePwdLp~~~~~ge~ewYFFs~r~rk~~~g~R~~   96 (315)
                      .+.+..|||||||+|||||||.+||++|+.|.+++..+|+++|||++|||+||+.+..++.+|||||++.+||++|.|++
T Consensus         9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~n   88 (174)
T 3ulx_A            9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPN   88 (174)
T ss_dssp             CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSC
T ss_pred             cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCce
Confidence            34556789999999999999999999999999999999999999999999999987778899999999999999999999


Q ss_pred             ccccCceEeeecCceeEEcCCCCCceeeEEEEEEEeeeccCCCCCCcCeeEEEEeCCCCCCCCCCccCCCCCCCCCCCce
Q 046948           97 RVTGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVW  176 (315)
Q Consensus        97 R~tg~G~WK~~G~~k~I~~~~g~~~~vIG~Kktl~Fy~g~~~~g~kT~W~MhEY~L~~~~~~~~~~~p~~~~~~~~~e~~  176 (315)
                      |+|++||||++|++++|...    +.+||+||+|+||.|+++++.||+|+||||+|........   .+ .......++|
T Consensus        89 R~t~~G~WkatG~dk~I~~~----g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~---~~-~~~~~~~~~w  160 (174)
T 3ulx_A           89 RAAGNGYWKATGADKPVAPR----GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAA---GA-KKGSLRLDDW  160 (174)
T ss_dssp             EEETTEEEEECSCCEEECCS----SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC---------------CCSSE
T ss_pred             eecCCceEccCCCCcEEeeC----CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccc---cc-ccCCCCCCCE
Confidence            99999999999999999864    5899999999999999999999999999999998754210   00 1112356799


Q ss_pred             EEEEEeeeCC
Q 046948          177 TICRVFKRNV  186 (315)
Q Consensus       177 VLCRIykk~~  186 (315)
                      ||||||+|+.
T Consensus       161 VlCrvf~K~~  170 (174)
T 3ulx_A          161 VLCRLYNKKN  170 (174)
T ss_dssp             EEEEEEESCC
T ss_pred             EEEEEEEcCC
Confidence            9999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	4e-60

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  187 bits (476), Expect = 4e-60
 Identities = 77/177 (43%), Positives = 106/177 (59%), Gaps = 15/177 (8%)

Query: 10  HHCYRDDHEADDR-QLP-GFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWD 67
            H    + +   +  LP GFRF+PTDEEL+  YL RK      S++LI +ID+YK DPW 
Sbjct: 2   SHMGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWV 61

Query: 68  LPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSDGGEGQDCIGLK 127
           LP  +   + E YFF  R RKY N  RPNRV GSG+WKATG DK + ++G      +G+K
Sbjct: 62  LPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG----QRVGIK 117

Query: 128 KTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTICRVFKR 184
           K LV+Y G A KGTKT+W+M+E+RL    R   +          + + W +CR++K+
Sbjct: 118 KALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGS---------TKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.8e-51  Score=358.08  Aligned_cols=154  Identities=48%  Similarity=0.886  Sum_probs=129.0

Q ss_pred             cCCCCCCCceecCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCCcCCCCCceEEEEeecccccCCCCCCccc
Q 046948           19 ADDRQLPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRV   98 (315)
Q Consensus        19 ~~~~lpPGfRF~PTDeELV~~YL~~Ki~g~plp~~~I~~vDVY~~ePwdLp~~~~~ge~ewYFFs~r~rk~~~g~R~~R~   98 (315)
                      ..-.|||||||+|||||||.+||++|+.|.|++..+|+++|||++|||+||+....++++|||||++.++++++.|.+|+
T Consensus        13 ~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~R~   92 (166)
T d1ut7a_          13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRV   92 (166)
T ss_dssp             CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEE
T ss_pred             ccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCccccc
Confidence            34468899999999999999999999999999999999999999999999987766788999999999999999999999


Q ss_pred             ccCceEeeecCceeEEcCCCCCceeeEEEEEEEeeeccCCCCCCcCeeEEEEeCCCCCCCCCCccCCCCCCCCCCCceEE
Q 046948           99 TGSGFWKATGIDKPVYSDGGEGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRLPSDDRSGNTNVTNAKTTLPEAEVWTI  178 (315)
Q Consensus        99 tg~G~WK~~G~~k~I~~~~g~~~~vIG~Kktl~Fy~g~~~~g~kT~W~MhEY~L~~~~~~~~~~~p~~~~~~~~~e~~VL  178 (315)
                      +++|+||++|+++.|.+.    +.+||+||+|+||+++++++.+|+|+||||+|......         ......++|||
T Consensus        93 ~g~G~Wk~~g~~~~i~~~----g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~---------~~~~~~~~~VL  159 (166)
T d1ut7a_          93 AGSGYWKATGTDKIISTE----GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR---------NGSTKLDDWVL  159 (166)
T ss_dssp             ETTEEEEEEEEEEEEEET----TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------------CCEEE
T ss_pred             cCCCEecccCCCceEecC----CcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccc---------cCccccCCEEE
Confidence            999999999999998864    58999999999999999999999999999999876542         01234568999


Q ss_pred             EEEeeeC
Q 046948          179 CRVFKRN  185 (315)
Q Consensus       179 CRIykk~  185 (315)
                      ||||+|+
T Consensus       160 CrI~~Kk  166 (166)
T d1ut7a_         160 CRIYKKQ  166 (166)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999974