Citrus Sinensis ID: 046962

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWKESSY
Secondary Structure (PSIPRED)
cccEEEEEEEEccccccccccccccccEEEEEEccEEEEEEEEcccccccEEccEEEEEEcccccEEEEEEEEccccccccEEEEEEEEccccccccccccEEEEEccccEEcEEEEEEEEEEEccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEccccccccccccccEEEEEEEcEEEEEEEEccccccccEEEEEEEEEEccccEEEEEEEEccccccccEEEEEEEEccEcccccccccccccccccccEEEEEEEEEEEEEcccccccccccccccccccHHcccccccccccccccc
Coil and Loop (DISEMBL)
MPKGTLEVLLVCAKglqdtdflsnmdpyvvlscrtqekrssvasgqgttpnwneNFVFTISEGTTALKlkimdsdtvsqddfvgeaiiplhsvfeagnvpqqaynvvkdkkfqgevrvgltfkpegghghhshgraageshsggdrgyggesyggwkessy
Flexible Loop (DISEMBL)
MPKGTLEVLLVCAKglqdtdflsNMDPYVVLSCRTQEKrssvasgqgttpnwneNFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPEGGHGHHShgraageshsggdrgyggesyggwkessy
Low Complexity Region (SEG)
MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPegghghhshgraageshsggdrgyggesyggwkessy
Disordered region (IsUnstruct)
*****LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT**************PNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTF***************************************
Disordered Region (DISOPRED)
MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKR******QGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFK**************************************
Disordered Region (DISEMBL)
MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR************GTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPE****************************GGWKESSY
Disordered Region (DISPRO)
*PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPEGGHGHHSHGRAAGESHSGGDRGYG**S*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWKESSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q9C8S6	147	C2 domain-containing prot	yes	no	0.900	0.986	0.576	3e-47
Q0JBH9	144	Elicitor-responsive prote	no	no	0.894	1.0	0.512	2e-43
Q25AG5	144	Elicitor-responsive prote	N/A	no	0.894	1.0	0.512	2e-43
Q0JHU5	159	Elicitor-responsive prote	no	no	0.857	0.867	0.424	2e-22
A2WWV5	159	Elicitor-responsive prote	N/A	no	0.857	0.867	0.424	2e-22
Q9ZT46	138	16 kDa phloem protein 2 O	N/A	no	0.782	0.913	0.347	2e-15
Q9ZT47	150	16 kDa phloem protein 1 O	N/A	no	0.763	0.82	0.348	6e-15
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.788	0.223	0.291	4e-09
Q8L706	560	Synaptotagmin-5 OS=Arabid	no	no	0.770	0.221	0.330	1e-08
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.751	0.224	0.301	7e-08

>sp|Q9C8S6|Y1322_ARATH C2 domain-containing protein At1g63220 OS=Arabidopsis thaliana GN=At1g63220 PE=1 SV=1

 Score =  187 bits (475), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 94/163 (57%), Positives = 116/163 (71%), Gaps = 18/163 (11%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           MP GTLEV+LV AKGL+D DFL+NMDPYV L+CRTQ+++S+VA G GTTP WNE F+FT+
Sbjct: 1   MPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           SEGTT LK KI D D  ++DD VGEA IPL  VF  G++P  AYNVVKD++++GE+ V L
Sbjct: 61  SEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWK--ESSY 161
           +FKP       S  R+         RG   ESYGGWK  E+SY
Sbjct: 121 SFKP-------SENRS---------RGMDEESYGGWKNSEASY 147

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JBH9|ERG3_ORYSJ Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica GN=ERG3 PE=2 SV=1

 Score =  174 bits (442), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 112/160 (70%), Gaps = 16/160 (10%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           M +GTLEVLLV AKGL++TD+L NMDPY VL CR+QE++SSVASG+G+ P WNE F+F++
Sbjct: 1   MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           +   T L +K+MDSD+ + DDFVGEA I L +++  G++P   YNVVK+++++GE++VGL
Sbjct: 61  THNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEGSIPPTVYNVVKEEEYRGEIKVGL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWKESS 160
           TF PE                   DRG   E  GGWK+SS
Sbjct: 121 TFTPEDDR----------------DRGLSEEDIGGWKQSS 144

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q25AG5|ERG3_ORYSI Elicitor-responsive protein 3 OS=Oryza sativa subsp. indica GN=ERG3 PE=2 SV=1

 Score =  174 bits (442), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 112/160 (70%), Gaps = 16/160 (10%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           M +GTLEVLLV AKGL++TD+L NMDPY VL CR+QE++SSVASG+G+ P WNE F+F++
Sbjct: 1   MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           +   T L +K+MDSD+ + DDFVGEA I L +++  G++P   YNVVK+++++GE++VGL
Sbjct: 61  THNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEGSIPPTVYNVVKEEEYRGEIKVGL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWKESS 160
           TF PE                   DRG   E  GGWK+SS
Sbjct: 121 TFTPEDDR----------------DRGLSEEDIGGWKQSS 144

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JHU5|ERG1_ORYSJ Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica GN=ERG1 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 86/153 (56%), Gaps = 15/153 (9%)

Query: 4   GTLEVLLVCAKGLQDTDFLS---NMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           G LEV LV AKGL   DFL     +DPYVV+  R+QE++SSVA  QG  P+WNE F F I
Sbjct: 5   GVLEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQI 64

Query: 61  ----SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG------NVPQQAYNVV-KD 109
               + G   L L++MD DT S+DDF+GEA I +  +   G       + +  + VV  D
Sbjct: 65  NSTAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLGMEHGTWEMSESKHRVVLAD 124

Query: 110 KKFQGEVRVGLTFKPEGGHGHHSHGRAAGESHS 142
           K + GE+RV LTF        H+  +  G +HS
Sbjct: 125 KTYHGEIRVSLTFTASAKAQDHAE-QVGGWAHS 156

May play a role in plant defense signaling. Isoform 2 binds to phospholipids in a Ca(2+)-dependent manner in response to pathogen elicitors.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WWV5|ERG1_ORYSI Elicitor-responsive protein 1 OS=Oryza sativa subsp. indica GN=ERG1 PE=2 SV=2

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 86/153 (56%), Gaps = 15/153 (9%)

Query: 4   GTLEVLLVCAKGLQDTDFLS---NMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           G LEV LV AKGL   DFL     +DPYVV+  R+QE++SSVA  QG  P+WNE F F I
Sbjct: 5   GVLEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQI 64

Query: 61  ----SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG------NVPQQAYNVV-KD 109
               + G   L L++MD DT S+DDF+GEA I +  +   G       + +  + VV  D
Sbjct: 65  NSTAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLGMEHGTWEMSESKHRVVLAD 124

Query: 110 KKFQGEVRVGLTFKPEGGHGHHSHGRAAGESHS 142
           K + GE+RV LTF        H+  +  G +HS
Sbjct: 125 KTYHGEIRVSLTFTASAKAQDHAE-QVGGWAHS 156

May play a role in plant defense signaling. Isoform 2 binds to phospholipids in a Ca(2+)-dependent manner in response to pathogen elicitors.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9ZT46|PP16B_CUCMA 16 kDa phloem protein 2 OS=Cucurbita maxima GN=PP16-2 PE=1 SV=3

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 12/138 (8%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSN-MDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFT 59
           M  G +EV L+  KGLQ  D L+  +DPY  ++ + QE+ S VA   G  P WNE F F 
Sbjct: 1   MGMGMMEVHLISGKGLQAHDPLNKPIDPYAEINFKGQERMSKVAKNAGPDPIWNEKFKFL 60

Query: 60  I----SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG------NVPQQAYNVVKD 109
           +    S G   +  K+MD D +  DD++G+  I + ++   G       +P + Y V+  
Sbjct: 61  VEYPGSGGDFHILFKVMDHDAIDGDDYIGDVKIDVQNLLAEGVRKGWSELPPRMYQVLAH 120

Query: 110 K-KFQGEVRVGLTFKPEG 126
           K  F+GE+ VG+ F+ +G
Sbjct: 121 KIYFKGEIEVGVFFQRQG 138

Binds to both sense and antisense RNA. Interacts with mesophyll plasmodesmata to mediate its own cell-to-cell transport and potentiate RNA trafficking.

Cucurbita maxima (taxid: 3661)

>sp|Q9ZT47|PP16A_CUCMA 16 kDa phloem protein 1 OS=Cucurbita maxima GN=PP16-1 PE=1 SV=3

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 12/135 (8%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSN-MDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFT 59
           M  G +EV L+  KGLQ  D L+  +DPY  ++ + QE+ S VA   G  P W+E F F 
Sbjct: 1   MGMGMMEVHLISGKGLQAHDPLNKPIDPYAEINFKGQERMSKVAKNAGPNPLWDEKFKFL 60

Query: 60  I----SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG------NVPQQAYNVVKD 109
                S G   +  K+MD D +  DD++G+  I + ++   G       +P + Y+V+  
Sbjct: 61  AEYPGSGGDFHILFKVMDHDAIDGDDYIGDVKIDVKNLLAEGVRKGKSEMPPRMYHVLAH 120

Query: 110 K-KFQGEVRVGLTFK 123
           K  F+GE+ VG++FK
Sbjct: 121 KIHFKGEIEVGVSFK 135

Binds to both sense and antisense RNA. Interacts with mesophyll plasmodesmata to mediate its own cell-to-cell transport and potentiate RNA trafficking.

Cucurbita maxima (taxid: 3661)

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVAS--GQGTTPNWNENFVFT 59
           P G L+V +V AK L + D +   DPY ++  R    R+           P WNE+F F 
Sbjct: 262 PVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFI 321

Query: 60  ISEGTTA-LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQ----- 113
           + + +T  L +++ D + V     +G A +PL+ +   G V      +VKD + Q     
Sbjct: 322 VEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELV-PGKVKDIWLKLVKDLEIQRDTKN 380

Query: 114 -GEVRVGLTFKPEGGHG 129
            G+V++ L + P G  G
Sbjct: 381 RGQVQLELLYCPLGKEG 397

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 12/136 (8%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYV---VLSCRTQEKRSSVASGQGTTPNWNENFVF 58
           P G LEV LV AK L + D +   DP+    +   R + KRS   +     P WNE+F F
Sbjct: 260 PVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKRSKTINND-LNPIWNEHFEF 318

Query: 59  TISEGTTA-LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQ---- 113
            + + +T  L ++I D + V   + +G A I L    E G V      +VKD + Q    
Sbjct: 319 VVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCE-LEPGKVKDVWLKLVKDLEIQRDTK 377

Query: 114 --GEVRVGLTFKPEGG 127
             GEV + L + P G 
Sbjct: 378 NRGEVHLELLYIPYGS 393

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 15/136 (11%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEK---RSSVASGQGTTPNWNENFVF 58
           P G L V ++ A+ L   D L   DPYV LS  T EK   + +    +   P WNE+F  
Sbjct: 259 PVGLLHVSILRARNLLKKDLLGTSDPYVKLSL-TGEKLPAKKTTIKKRNLNPEWNEHFKL 317

Query: 59  TISE-GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK--------- 108
            + +  +  L+L++ D D V   D +G  +IPL  +   G   +   +++K         
Sbjct: 318 IVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKI-NPGERKEFNLDLIKNSNVVMDSG 376

Query: 109 DKKFQGEVRVGLTFKP 124
           DKK +G + V L + P
Sbjct: 377 DKKKRGRLEVDLRYVP 392

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
118484867	149	unknown [Populus trichocarpa]	0.913	0.986	0.571	6e-48
225426785	147	PREDICTED: elicitor-responsive protein 3	0.913	1.0	0.608	4e-47
224063991	146	predicted protein [Populus trichocarpa]	0.906	1.0	0.568	4e-47
255537373	174	Elicitor-responsive protein, putative [R	0.776	0.718	0.704	5e-47
21553977	147	putative elicitor-responsive gene [Arabi	0.900	0.986	0.570	5e-46
297840171	147	C2 domain-containing protein [Arabidopsi	0.900	0.986	0.576	5e-46
357973568	147	elicitor responsive protein 3 [Camellia	0.913	1.0	0.577	1e-45
15221718	147	calcium-dependent lipid-binding domain-c	0.900	0.986	0.576	1e-45
388490990	143	unknown [Lotus japonicus] gi|388491512|g	0.888	1.0	0.546	2e-45
449452360	148	PREDICTED: elicitor-responsive protein 3	0.906	0.986	0.540	5e-44

>gi|118484867|gb|ABK94300.1| unknown [Populus trichocarpa]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 123/161 (76%), Gaps = 14/161 (8%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           MP+GT++V+LV AKGL++TDF +N+DPYV+L+CR+QE+RSSVASGQG+ P WNE FVFTI
Sbjct: 1   MPEGTIQVVLVGAKGLENTDFFTNIDPYVLLTCRSQEQRSSVASGQGSEPEWNETFVFTI 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           SEGT+ L LKI+D DT++ DD++G+A IPL  +F  GN+P  AYNVVKD++++GE+RVGL
Sbjct: 61  SEGTSELVLKIVDHDTLTDDDYLGKASIPLEPLFIEGNLPTTAYNVVKDEEYRGEIRVGL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWKESSY 161
           +F PE         R    +   G+     ESYGGWKES+Y
Sbjct: 121 SFTPE---------RRTSRTFDAGE-----ESYGGWKESAY 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426785|ref|XP_002282926.1| PREDICTED: elicitor-responsive protein 3 [Vitis vinifera] gi|297742592|emb|CBI34741.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 120/161 (74%), Gaps = 14/161 (8%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           MP+GTLEVLLV AKGL++TDFL NMDPYVVL+CRTQE++SSVASG+G+ P WNE+FVFTI
Sbjct: 1   MPQGTLEVLLVGAKGLENTDFLCNMDPYVVLTCRTQEQKSSVASGKGSDPEWNEHFVFTI 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           SEG + L +KIMDSD+ S DDFVGEA IPL ++F  G++    YNVVKD+++ GE+RVGL
Sbjct: 61  SEGISELTIKIMDSDSGSGDDFVGEATIPLEALFTEGSLEPAPYNVVKDQEYCGEIRVGL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWKESSY 161
           TF           G   GES +        E+YGGWKESSY
Sbjct: 121 TFT--------QKGECDGESCA------QEENYGGWKESSY 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063991|ref|XP_002301337.1| predicted protein [Populus trichocarpa] gi|222843063|gb|EEE80610.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 91/160 (56%), Positives = 122/160 (76%), Gaps = 14/160 (8%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           MP+GT++V+LV AKGL++TDF +N+DPYV+L+CR+QE+RSSVASGQG+ P WNE FVFTI
Sbjct: 1   MPEGTIQVVLVGAKGLENTDFFTNIDPYVLLTCRSQEQRSSVASGQGSEPEWNETFVFTI 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           SEGT+ L LKI+D DT++ DD++G+A IPL  +F  GN+P  AYNVVKD++++GE+RVGL
Sbjct: 61  SEGTSELVLKIVDHDTLTDDDYLGKASIPLEPLFIEGNLPTTAYNVVKDEEYRGEIRVGL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWKESS 160
           +F PE         R    +   G+     ESYGGWKES+
Sbjct: 121 SFTPE---------RRTSRTFDAGE-----ESYGGWKESA 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537373|ref|XP_002509753.1| Elicitor-responsive protein, putative [Ricinus communis] gi|223549652|gb|EEF51140.1| Elicitor-responsive protein, putative [Ricinus communis]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 107/125 (85%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           M +GTLEVLLV AKGL++TDFL+NMDPYV+L+CR+QE++SSVASG+G  P WNENF+FTI
Sbjct: 1   MSQGTLEVLLVGAKGLENTDFLNNMDPYVILTCRSQEQKSSVASGKGCEPEWNENFIFTI 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           +EG T L LKIMDSD  SQDDFVGEA IPL  +F  G+VP  AYNVVKD++++GE+RV L
Sbjct: 61  TEGVTELALKIMDSDAGSQDDFVGEATIPLEPLFLEGSVPSTAYNVVKDEEYKGEIRVAL 120

Query: 121 TFKPE 125
           TFKPE
Sbjct: 121 TFKPE 125

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553977|gb|AAM63058.1| putative elicitor-responsive gene [Arabidopsis thaliana]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/163 (57%), Positives = 114/163 (69%), Gaps = 18/163 (11%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           MP GTLEV+LV AKGL+D DFL+NMDPYV L+CRTQ+++S+VA G GTTP WNE F+FT+
Sbjct: 1   MPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           SEGTT LK KI D D  ++DD VGEA IPL  VF  G++P  AYNVVKD++++GE+ V L
Sbjct: 61  SEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWK--ESSY 161
           +FKP G                   RG   ESYGGWK  E+SY
Sbjct: 121 SFKPSGNRS----------------RGMDEESYGGWKNSEASY 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840171|ref|XP_002887967.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333808|gb|EFH64226.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/163 (57%), Positives = 116/163 (71%), Gaps = 18/163 (11%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           MP GTLEV+LV AKGL+D DFL+NMDPYV L+CRTQ+++SSVA G GTTP WNE F+FT+
Sbjct: 1   MPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSSVAEGMGTTPEWNETFIFTV 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           SEGTT LK KI D D  ++DD VGEA IPL  VF  G++P  AYNVVKD++++GE+ + L
Sbjct: 61  SEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWIAL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWK--ESSY 161
           +FKP       S  R+         RG   ESYGGWK  E+SY
Sbjct: 121 SFKP-------SENRS---------RGINEESYGGWKNSEASY 147

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357973568|gb|AET97660.1| elicitor responsive protein 3 [Camellia sinensis]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 118/161 (73%), Gaps = 14/161 (8%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           MP+GTLEVLLV AKGL++TDFLSNMDPYV+L+CRTQE++SSVASG+G+ P WNE+F+FT+
Sbjct: 1   MPRGTLEVLLVGAKGLENTDFLSNMDPYVILTCRTQEQKSSVASGKGSEPEWNESFLFTV 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           S+GTT L +KIMDSD  S DDFVGEA IPL  VF  G++   +YNVVKD+++ GE+++GL
Sbjct: 61  SDGTTELLIKIMDSDHGSADDFVGEATIPLEPVFIEGSMATASYNVVKDEEYHGEIKIGL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWKESSY 161
           TF  E G       +               ES+GGWKE SY
Sbjct: 121 TFTSEEGCEAVFCEQE--------------ESFGGWKEFSY 147

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221718|ref|NP_176511.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|73920511|sp|Q9C8S6.1|Y1322_ARATH RecName: Full=C2 domain-containing protein At1g63220 gi|12324356|gb|AAG52148.1|AC022355_9 putative elicitor-responsive gene; 59810-58583 [Arabidopsis thaliana] gi|15451086|gb|AAK96814.1| putative elicitor-responsive gene [Arabidopsis thaliana] gi|20148351|gb|AAM10066.1| putative elicitor-responsive gene [Arabidopsis thaliana] gi|332195950|gb|AEE34071.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/163 (57%), Positives = 116/163 (71%), Gaps = 18/163 (11%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           MP GTLEV+LV AKGL+D DFL+NMDPYV L+CRTQ+++S+VA G GTTP WNE F+FT+
Sbjct: 1   MPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           SEGTT LK KI D D  ++DD VGEA IPL  VF  G++P  AYNVVKD++++GE+ V L
Sbjct: 61  SEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWK--ESSY 161
           +FKP       S  R+         RG   ESYGGWK  E+SY
Sbjct: 121 SFKP-------SENRS---------RGMDEESYGGWKNSEASY 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490990|gb|AFK33561.1| unknown [Lotus japonicus] gi|388491512|gb|AFK33822.1| unknown [Lotus japonicus]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 114/161 (70%), Gaps = 18/161 (11%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           MP+GTLEVLL+ AKGL++TD+L NMDPYV+L+CRTQ+++SS+ASG+G+ P WNE+FVF +
Sbjct: 1   MPQGTLEVLLISAKGLENTDYLCNMDPYVILTCRTQQQQSSIASGKGSDPEWNESFVFNL 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           S G + LKLKIMDSDT +  DFVGEA IPL ++F  GN+P  +YNVVKD+ + GE+R+GL
Sbjct: 61  SHGVSELKLKIMDSDTGTGHDFVGEATIPLDALFTDGNIPAMSYNVVKDEHYCGEIRIGL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWKESSY 161
           TF PE                          S+GGWKES Y
Sbjct: 121 TFTPEARDERQER------------------SFGGWKESGY 143

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452360|ref|XP_004143927.1| PREDICTED: elicitor-responsive protein 3-like [Cucumis sativus] gi|449495854|ref|XP_004159964.1| PREDICTED: elicitor-responsive protein 3-like [Cucumis sativus]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 114/161 (70%), Gaps = 15/161 (9%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           MP GTLEVLLV AKGL++TD+L NMDPYV L+CR+QE++SSVASG+G+ P WNE F+FTI
Sbjct: 1   MPAGTLEVLLVSAKGLENTDYLCNMDPYVTLTCRSQEQKSSVASGKGSDPEWNETFLFTI 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           SEG   L LKI DSDT +QDDFVG+  IPL  V+  G++P+ AYNVVKD++++GE+++ L
Sbjct: 61  SEGAEELILKISDSDTGTQDDFVGQVKIPLEPVYLEGSLPETAYNVVKDEEYRGEIKIRL 120

Query: 121 TFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGGWKESSY 161
            F PE     +                   E+YGGWK+SS+
Sbjct: 121 KFSPEERTERNFQVE---------------ETYGGWKQSSF 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2038461	147	AT1G63220 "AT1G63220" [Arabido	0.770	0.843	0.645	2.8e-41
TAIR|locus:2099946	156	AT3G55470 "AT3G55470" [Arabido	0.757	0.782	0.373	1.1e-16
TAIR|locus:4515103319	202	AT4G00467 "AT4G00467" [Arabido	0.757	0.603	0.368	2.3e-16
TAIR|locus:2124321	247	AT4G34150 "AT4G34150" [Arabido	0.720	0.469	0.347	7.1e-13
TAIR|locus:2201036	560	NTMC2T2.1 "AT1G05500" [Arabido	0.751	0.216	0.330	4.4e-09
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.757	0.214	0.287	5.8e-09
TAIR|locus:2127338	337	ZAC [Arabidopsis thaliana (tax	0.689	0.329	0.291	2.2e-08
TAIR|locus:2035042	168	AT1G73580 "AT1G73580" [Arabido	0.565	0.541	0.354	2.6e-08
TAIR|locus:2160867	166	AT5G47710 "AT5G47710" [Arabido	0.596	0.578	0.295	2.6e-08
TAIR|locus:2077367	385	AT3G07940 [Arabidopsis thalian	0.565	0.236	0.344	2.8e-08

TAIR|locus:2038461 AT1G63220 "AT1G63220" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 80/124 (64%), Positives = 100/124 (80%)

Query:     1 MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
             MP GTLEV+LV AKGL+D DFL+NMDPYV L+CRTQ+++S+VA G GTTP WNE F+FT+
Sbjct:     1 MPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV 60

Query:    61 SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
             SEGTT LK KI D D  ++DD VGEA IPL  VF  G++P  AYNVVKD++++GE+ V L
Sbjct:    61 SEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 120

Query:   121 TFKP 124
             +FKP
Sbjct:   121 SFKP 124

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099946 AT3G55470 "AT3G55470" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 50/134 (37%), Positives = 74/134 (55%)

Query:     1 MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQG-TTPNWNENFVFT 59
             M  G LEV L+  KGL+ +DFL  +DPYV +  + Q ++SSVA   G   P WN+   + 
Sbjct:     1 MAVGILEVSLISGKGLKRSDFLGKIDPYVEIQYKGQTRKSSVAKEDGGRNPTWNDKLKWR 60

Query:    60 IS-EGTTA---LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG------NVPQQAYNVV-K 108
                 G+ A   L +K+MD DT S DDF+GEA + +  + E G       +    YN+V  
Sbjct:    61 AEFPGSGADYKLIVKVMDHDTFSSDDFIGEATVHVKELLEMGVEKGTAELRPTKYNIVDS 120

Query:   109 DKKFQGEVRVGLTF 122
             D  F GE+ +G+++
Sbjct:   121 DLSFVGELLIGVSY 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:4515103319 AT4G00467 "AT4G00467" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 49/133 (36%), Positives = 71/133 (53%)

Query:     1 MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
             M +G LEV L+ A G+  T+F+     YV+L C T+E RS ++ G      WN+ FVF  
Sbjct:     1 MKRGILEVFLIDAHGITHTNFIGTPVYYVLLQCGTKEYRSKMSKGDNDNALWNQKFVFDF 60

Query:    61 S----EGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGN------VPQQAYNVV-KD 109
                  +  T +KL+I+D +  +   FVGE II L  +   G       +    YNVV +D
Sbjct:    61 PMSQWKKLTYIKLRILDKELFNDGGFVGETIIHLGGIITEGRDRGYIEIKPAPYNVVLED 120

Query:   110 KKFQGEVRVGLTF 122
               F+GE++VGL F
Sbjct:   121 DTFKGELKVGLRF 133

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124321 AT4G34150 "AT4G34150" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 41/118 (34%), Positives = 64/118 (54%)

Query:     6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTT 65
             LEV +V  + L+DT++ S  DPYVVL    +  R+   +  G    + E F+FT+ EG  
Sbjct:    12 LEVTVVGCQKLKDTEWFSRQDPYVVLEYGGRSHRTRTCTDGGKNAVFQEKFIFTLIEGLR 71

Query:    66 ALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKKFQGEVRVGLTF 122
              LK+ + +S+T+S DDF+G A I L  V          + +  K  +F GEV++ L +
Sbjct:    72 DLKVAVWNSNTLSTDDFIGNATIQLQKVLSQ-EYDDCTWTLQSKTGRFAGEVQLLLHY 128

GO:0009409 "response to cold" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 44/133 (33%), Positives = 64/133 (48%)

Query:     2 PKGTLEVLLVCAKGLQDTDFLSNMDPYV---VLSCRTQEKRSSVASGQGTTPNWNENFVF 58
             P G LEV LV AK L + D +   DP+    +   R + KRS   +     P WNE+F F
Sbjct:   260 PVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKRSKTINND-LNPIWNEHFEF 318

Query:    59 TISEGTTA-LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQ---- 113
              + + +T  L ++I D + V   + +G A I L  + E G V      +VKD + Q    
Sbjct:   319 VVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCEL-EPGKVKDVWLKLVKDLEIQRDTK 377

Query:   114 --GEVRVGLTFKP 124
               GEV + L + P
Sbjct:   378 NRGEVHLELLYIP 390

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0012505 "endomembrane system" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 38/132 (28%), Positives = 63/132 (47%)

Query:     2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVAS--GQGTTPNWNENFVFT 59
             P G L+V +V AK L + D +   DPY ++  R    R+           P WNE+F F 
Sbjct:   262 PVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFI 321

Query:    60 ISEGTTA-LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQ----- 113
             + + +T  L +++ D + V     +G A +PL+ +   G V      +VKD + Q     
Sbjct:   322 VEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVP-GKVKDIWLKLVKDLEIQRDTKN 380

Query:   114 -GEVRVGLTFKP 124
              G+V++ L + P
Sbjct:   381 RGQVQLELLYCP 392

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2127338 ZAC [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 35/120 (29%), Positives = 61/120 (50%)

Query:     4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
             G L+V +     +   D +S+ DPYVVL+   Q+ +S+V       P WNE  + ++   
Sbjct:   181 GLLKVTIKKGTNMAIRDMMSS-DPYVVLTLGQQKAQSTVVKSN-LNPVWNEELMLSVPHN 238

Query:    64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFK 123
               ++KL++ D DT S DD +GEA I +  +  +      A+    D +  G++++G   K
Sbjct:   239 YGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSA----MAFG---DPEMFGDMQIGKWLK 291

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2035042 AT1G73580 "AT1G73580" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 33/93 (35%), Positives = 47/93 (50%)

Query:     4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
             G L V +     L   D +S+ DPYVVL    Q+ ++ V   Q   P W E+  FT+++ 
Sbjct:     9 GILRVRVQRGVNLAVRD-VSSSDPYVVLKLGRQKLKTKVVK-QNVNPQWQEDLSFTVTDP 66

Query:    64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEA 96
                L L + D D  S+DD +G+A I L    EA
Sbjct:    67 NLPLTLIVYDHDFFSKDDKMGDAEIDLKPYIEA 99

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160867 AT5G47710 "AT5G47710" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/98 (29%), Positives = 47/98 (47%)

Query:     2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTIS 61
             P G L+V ++  K L   DF S+ DPYV++    +  ++ V +     P WNE   FT+ 
Sbjct:     4 PLGLLQVTVIQGKKLVIRDFKSS-DPYVIVKLGNESAKTKVINNC-LNPVWNEELNFTLK 61

Query:    62 EGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNV 99
             +    L L++ D D    DD +G A + L  +     +
Sbjct:    62 DPAAVLALEVFDKDRFKADDKMGHASLSLQPLISVARL 99

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2077367 AT3G07940 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 32/93 (34%), Positives = 49/93 (52%)

Query:     4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
             G ++V +V    L   D +++ DPYV+L+   Q  ++ V       P WNE  + +I E 
Sbjct:   229 GLIKVNVVKGTNLAVRDVMTS-DPYVILALGQQSVKTRVIKNN-LNPVWNETLMLSIPEP 286

Query:    64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEA 96
                LK+ + D DT S DDF+GEA I +  +  A
Sbjct:   287 MPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSA 319

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C8S6	Y1322_ARATH	No assigned EC number	0.5766	0.9006	0.9863	yes	no
Q25AG5	ERG3_ORYSI	No assigned EC number	0.5125	0.8944	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001101001 SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (147 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	9e-53
cd00030	102	cd00030, C2, C2 domain	1e-22
smart00239	101	smart00239, C2, Protein kinase C conserved region	7e-21
pfam00168	85	pfam00168, C2, C2 domain	3e-18
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	1e-15
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-12
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	3e-12
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	4e-12
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	1e-11
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	5e-11
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	1e-10
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	9e-10
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-09
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-09
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	4e-09
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-08
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	4e-08
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	4e-08
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	9e-08
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-07
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	1e-07
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-07
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-07
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	3e-07
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	4e-07
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	4e-07
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	5e-07
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	8e-07
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	1e-06
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	2e-06
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-06
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	2e-06
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	2e-06
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	3e-06
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	3e-06
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	9e-06
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	2e-05
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	2e-05
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	2e-05
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	3e-05
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	3e-05
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	4e-05
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	4e-05
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	6e-05
cd04016	121	cd04016, C2_Tollip, C2 domain present in Toll-inte	6e-05
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	7e-05
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	1e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	1e-04
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	2e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	2e-04
cd08394	127	cd08394, C2A_Munc13, C2 domain first repeat in Mun	2e-04
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	3e-04
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	5e-04
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	5e-04
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	5e-04
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	7e-04
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	7e-04
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	0.001
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	0.001
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	0.003
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	0.003

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score =  163 bits (414), Expect = 9e-53
 Identities = 63/124 (50%), Positives = 76/124 (61%), Gaps = 11/124 (8%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
           GTLEVLL+ AKGLQDTDFL  +DPYV++ CRTQE++S VA G G  P WNE F FT+   
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60

Query: 64  ----TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK-------DKKF 112
                T L L+IMD D  S DDF+GEA I L  +FE G  P  A  V         D  +
Sbjct: 61  GWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKYNVVLEDDTY 120

Query: 113 QGEV 116
           +GE+
Sbjct: 121 KGEI 124

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 86.0 bits (213), Expect = 1e-22
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 6   LEVLLVCAKGLQDTDFLSNMDPYVVLSC-RTQEKRSSVASGQGTTPNWNENFVFTISEGT 64
           L V ++ A+ L   D     DPYV +S    Q+ ++ V       P WNE F F + +  
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNT-LNPVWNETFEFPVLDPE 59

Query: 65  TA-LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYN 105
           +  L +++ D D  S+DDF+GE  IPL  + ++G   +    
Sbjct: 60  SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLP 101

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 81.4 bits (201), Expect = 7e-21
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 5  TLEVLLVCAKGLQDTDFLSNMDPYVVLSC---RTQEKRSSVASGQGTTPNWNENFVFTIS 61
          TL V ++ A+ L   D     DPYV +S      ++K++ V       P WNE F F + 
Sbjct: 1  TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTL-NPVWNETFEFEVP 59

Query: 62 EGTTA-LKLKIMDSDTVSQDDFVGEAIIPLHSV 93
              A L++++ D D   +DDF+G+  IPL  +
Sbjct: 60 PPELAELEIEVYDKDRFGRDDFIGQVTIPLSDL 92

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 74.2 bits (183), Expect = 3e-18
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 6  LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE---KRSSVASGQGTTPNWNENFVFTISE 62
          L V ++ AK L   D     DPYV +S   Q+   K++ V       P WNE F F ++ 
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKN-TLNPVWNETFTFEVTL 59

Query: 63 GTTA-LKLKIMDSDTVSQDDFVGEAI 87
             A L++++ D D   +DDF+GE  
Sbjct: 60 PELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 4  GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
          G L+V +V    L   DF S+ DPYVVL+   Q+ ++ V   +   P WNE    ++   
Sbjct: 2  GLLKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIK-KNLNPVWNEELTLSVPNP 59

Query: 64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEA 96
             LKL++ D DT S+DD +GEA I L  + EA
Sbjct: 60 MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEA 92

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 4   GTLEVLLVCAKGLQDTDFLSN-MDPYVVLS--CRTQEKRSSVASGQGTTPNWNENFVFTI 60
           G L V +  A+GL+ +D +   +DPYV  S   R +  R+ V     + P WNE     +
Sbjct: 2   GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILV 60

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           +  T  L L + D +   +D  +G A   L S+ +         N++++ K  GE+   L
Sbjct: 61  NSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDL 120

Query: 121 TFKP 124
            F P
Sbjct: 121 RFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 59.9 bits (146), Expect = 3e-12
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 5  TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSS-VASGQGTTPNWNENFVFTISE- 62
          TLE+ ++ A+ L++ +    M  Y V+      K+S+ V    GT P WNE   F + E 
Sbjct: 1  TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDER 60

Query: 63 ----GTTALKLKIMDSDTVSQDDFVGEAIIPL 90
              G  AL +++        D  +GE  +PL
Sbjct: 61 LLQQGRLALTIEVYCERPSLGDKLIGEVRVPL 92

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 59.2 bits (144), Expect = 4e-12
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGT-TPNWNENFVFTISE 62
           G L+V ++ A GL   D     DP+ VL       ++       T  P WN+ F F I +
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTI--YKTLNPEWNKIFTFPIKD 58

Query: 63  GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVR 117
               L++ + D D   + +F+G+  IPL S+ + G   ++ +  +KDKK +   +
Sbjct: 59  IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSI-KNG---ERKWYALKDKKLRTRAK 109

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 58.0 bits (141), Expect = 1e-11
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI-SE 62
           GTL V+++ A+ L +   L   DPY VL      K++      G  P W+E   F I  +
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 63  GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTF 122
               LK+ + D D   + D +G+  + L    + G      Y +    ++ GEV + LTF
Sbjct: 61  KKPILKVAVFD-DDKRKPDLIGDTEVDLSPALKEGEF-DDWYELTLKGRYAGEVYLELTF 118

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 56.7 bits (137), Expect = 5e-11
 Identities = 34/102 (33%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 4   GTLEVLLVCAKGL--QDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI- 60
           G L V +V AK L  +D       DPY +LS   Q  ++         P WN    F I 
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP-NTLNPKWNYWCEFPIF 59

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQ 102
           S     LKL + D D  +  D++GE  I L  VF  G   Q 
Sbjct: 60  SAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQS 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 6  LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTT 65
          + + +VCA+GL   D     DPYV +     +KR+         P WNE F F     + 
Sbjct: 3  ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQN-LNPVWNEKFHFECHNSSD 61

Query: 66 ALKLKIMDSD-----------TVSQDDFVGEAII 88
           +K+++ D D           T   DDF+G+ II
Sbjct: 62 RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTII 95

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 53.0 bits (128), Expect = 9e-10
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 6  LEVLLVCAKGLQDTDFLSNMDPYVVLS--------CRTQEKRSSVASGQGTTPNWNENFV 57
          L V ++ A  +   D LS  D YV L          RT+  ++S+       P WNE F 
Sbjct: 2  LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSI------NPVWNETFE 55

Query: 58 FTI-SEGTTALKLKIMDSDTVSQDD 81
          F I S+    L+L +MD D V  D 
Sbjct: 56 FRIQSQVKNVLELTVMDEDYVMDDH 80

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 8/77 (10%)

Query: 23 SNMDPYVVLS------CRTQEKRSSVASGQGTTPNWNENFVFTISEGTTA-LKLKIMDSD 75
          S +DPYV +         + + ++ V    G  P WNE F F ++    A L+  + D D
Sbjct: 23 SIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82

Query: 76 TVSQDDFVGEAIIPLHS 92
          +   DDF+G+A +PL S
Sbjct: 83 S-GDDDFLGQACLPLDS 98

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 4   GTLEVLLVCAKGLQDTDFLSN--MDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTI 60
           G +EV +  A+GL+ +D   N  +DPY+ ++   +   ++ V       P WNE F   +
Sbjct: 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKK-NTLNPVWNETFYILL 494

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           +  T  L L + D ++   D  VG   + L  + +      + Y  +++ K  G +   L
Sbjct: 495 NSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDL 554

Query: 121 TFKP 124
            F P
Sbjct: 555 RFFP 558

Length = 1227

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 8  VLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTAL 67
          V +  A+GL   D     DPYV++ C  +  RS V      +P ++   +F   +  + +
Sbjct: 7  VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDT-LSPEFDTQAIFYRKKPRSPI 65

Query: 68 KLKIMDSDTVSQDDFVGEAIIP 89
          K+++ +S+ +  D+F+G+A + 
Sbjct: 66 KIQVWNSNLLC-DEFLGQATLS 86

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 6/125 (4%)

Query: 2    PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTIS 61
              G L ++L   + L  +D     DP+V L    +    +    +   P WNE F   + 
Sbjct: 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVL 1097

Query: 62   EGTT-ALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
                  L + + D D+  ++D +G A I L  +   G       N+  D K      +  
Sbjct: 1098 NRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGG---TTNSNIPLDGKTFIV--LDG 1152

Query: 121  TFKPE 125
            T  P 
Sbjct: 1153 TLHPG 1157

Length = 1227

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 18/106 (16%)

Query: 26  DPYVVLSC------RTQEKRSSVASGQGTTPNWNENFVFTISEGTTA-LKLKIMDSDTVS 78
           DP+V          +T+  + ++       P WNE+F   +     A LK+++ D D   
Sbjct: 21  DPFVKFYLNGEKVFKTKTIKKTL------NPVWNESFEVPVPSRVRAVLKVEVYDWDRGG 74

Query: 79  QDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKP 124
           +DD +G A I L  +      P++   +      QG  ++G  F P
Sbjct: 75  KDDLLGSAYIDLSDL-----EPEETTELTLPLDGQGGGKLGAVFLP 115

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 5   TLEVLLVCAKGLQ--DTDFLSNMDPYVVLSCRTQEKRS--SVASGQGTTPNWNENFVFTI 60
            L V L+ A+ L     D     DP+V +     E+RS  S    +   PN++E FVF +
Sbjct: 15  QLTVSLIKARNLPPRTKDVAHC-DPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQV 73

Query: 61  SEGT---TALKLKIMDSDTVSQDDFVGEAIIPL 90
           S        L+L + D D  S+   +G  + PL
Sbjct: 74  SFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 47.8 bits (114), Expect = 9e-08
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYV---VLSCRTQEKRSSVASGQGTTPNWNENFVF 58
             G L V L+ A+ LQ  DF    DPY    +L  R+  K+S +   +   P ++E+FVF
Sbjct: 14  DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHK-KTLNPEFDESFVF 72

Query: 59  TISEGTTA---LKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            +         L++ + D D  S+D+ +G   +PL  V
Sbjct: 73  EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEV 110

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 6  LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT------PNWNENFVFT 59
          L V ++    L   D     DPYV +S    +    + S Q  T      P WNE F F 
Sbjct: 2  LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61

Query: 60 ISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHS 92
          ++     L  ++ D + +++DDF+G+  +PL++
Sbjct: 62 VNPREHRLLFEVFDENRLTRDDFLGQVEVPLNN 94

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 25 MDPYVVLSCRTQEKRSSVASGQGTT-PNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV 83
           +PY VL      ++   ++ + T+ P W+E+F+F +S  +  L  ++ D+   S   F+
Sbjct: 18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFL 77

Query: 84 GEAIIPLHSV 93
          G AI+P   +
Sbjct: 78 GLAIVPFDEL 87

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 24/104 (23%)

Query: 5   TLEVLLVCAKGLQDTDFLSNMDPYVVL--------SCRTQEKRSSVASGQGTTPNWNENF 56
           TL + ++ A  L   DF    DP+V +           T+ KR ++       P+WNE F
Sbjct: 17  TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNL------NPHWNETF 70

Query: 57  VFTISEGTTALKLK-------IMDSDTVSQDDFVGEAIIPLHSV 93
           +F   EG    KL+       ++D D  S++D +GE  +PL+ V
Sbjct: 71  LF---EGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKV 111

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 9/97 (9%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC-----RTQEKRSSVASGQGTTPNWNENFVF 58
             L V+++ A+ L  +D     DPYV +S      + ++K++SV  G    P +NE F F
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGT-LNPVFNEAFSF 72

Query: 59  TISEG---TTALKLKIMDSDTVSQDDFVGEAIIPLHS 92
            +        +L + ++D D+V +++ +G+ ++   S
Sbjct: 73  DVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 4  GTLEVLLVCAKGLQDTD-FLSNM-----DPYVVLSCRTQEKRSSVASGQGTTPNWNENF- 56
          G L + ++ A+ L   D F+  +     DPYV++    Q  +S V   +   P WNE + 
Sbjct: 1  GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIK-ENLNPKWNEVYE 59

Query: 57 -VFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG 97
           V     G   L++++ D D   +DDF+G   I L SV + G
Sbjct: 60 AVVDEVPGQE-LEIELFDED-PDKDDFLGRLSIDLGSVEKKG 99

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVFT 59
             + V ++ A+ L+  D     DPYV +      +  EK+ +V   +   P +NE+F+F 
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 60  ISEGT---TALKLKIMDSDTVSQDDFVGEAIIP 89
           I       T L + +MD D +S++D +G+  + 
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIGKIYLG 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 5   TLEVLLVCAKGLQDTDFLSNMDPYVVL-----SCRTQEKRSSVASGQGTTPNWNENFVFT 59
            L   ++ AKGL+  D     DPYV L     + +  + R+     +   P +NE   + 
Sbjct: 16  ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH-KTRNPEFNETLTYY 74

Query: 60  -ISE---GTTALKLKIMDSDTVSQDDFVGEAIIPL 90
            I+E       L+L ++D D    +DF+GE  IPL
Sbjct: 75  GITEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPL 108

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 45.6 bits (109), Expect = 5e-07
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 11 VCAKGLQDTDFLSNMDPYVVLSCRTQE--KRSSVASGQGTTPNWNENFVFTIS-EGTTAL 67
          V A+ LQ  D     DPY+ +    ++   R +        P + + F    +  G + L
Sbjct: 7  VRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNT-LNPVFGKMFELEATLPGNSIL 65

Query: 68 KLKIMDSDTVSQDDFVGEAIIPL 90
          K+ +MD D +  DD +GE +I L
Sbjct: 66 KISVMDYDLLGSDDLIGETVIDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 44.9 bits (107), Expect = 8e-07
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 13/79 (16%)

Query: 25 MDPYVVLS-----CRTQEKRSSVASGQGTTPNWNENFVFTI--SEGTTALKLKIMDSDTV 77
          MDP+V++S      RT  +R ++       P +NE   F +   E    ++ K++D D  
Sbjct: 26 MDPFVIISFGRRVFRTSWRRHTL------NPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79

Query: 78 SQDDFVGEAIIPLHSVFEA 96
          S +D+V    + +  +  A
Sbjct: 80 SFNDYVATGSLSVQELLNA 98

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 37/127 (29%)

Query: 2   PKGTLEVLLVCAKGL--QDTDFLSNMDPYVVL------------SCRTQEKRSSVASGQG 47
           P   L+V ++ AKGL  +D +  S  DPY +L              + ++     A  + 
Sbjct: 26  PIFVLKVTVIEAKGLLAKDVNGFS--DPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKD 83

Query: 48  T----------------TPNWNENFVFTISEGTTA-LKLKIMDSDTVSQDDFVGEAIIPL 90
           T                 P WNE F F + + +   L L I D D    DDF+G   IPL
Sbjct: 84  TVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPL 139

Query: 91  HSVFEAG 97
             +   G
Sbjct: 140 KDLPSCG 146

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 6   LEVLLVCAKGLQDTDFLSNM-DPYVVLSCRTQEKRSSVASGQGTTPNWN-ENFVFTISEG 63
           L+V +V A+ L   D  S++ D +V +   +   ++ V   +   P WN E F F + + 
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDV-VKKSLNPVWNSEWFRFEVDDE 59

Query: 64  T---TALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQ 101
                 L++++MD DT S +D +G+  I L+ +    +V Q
Sbjct: 60  ELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQ 100

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 13 AKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGT-TALKLKI 71
          A+ L   D     DP+V +    Q   +SV   +   P WNE F F + EG  + L +++
Sbjct: 9  ARDLAPKDRNGTSDPFVRVFYNGQTLETSVVK-KSCYPRWNEVFEFELMEGADSPLSVEV 67

Query: 72 MDSDTVSQDDFVGEAIIPLHSVFEAGNV 99
           D D VS++DF+G+ +  + ++ +A   
Sbjct: 68 WDWDLVSKNDFLGKVVFSIQTLQQAKQE 95

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASG--QGTTPN--WNENFVFT 59
             L V+++ A+ L   D     DPYV ++    +KR S      +  T N  +NE+FVF 
Sbjct: 15  NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74

Query: 60  I--SEG-TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNV 99
           I   E    +++  ++DSD V++++ +G  ++   +    G+ 
Sbjct: 75  IPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHH 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSC-----RTQEKRSSVASGQGTTPNWNENFV 57
            G L V+++ AK L+  D     DPYV +       R ++K++++   +   P +NE+F 
Sbjct: 14  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-RTLNPYYNESFS 72

Query: 58  FTISE---GTTALKLKIMDSDTVSQDDFVGEAII 88
           F +         L + ++D D + ++D +G+ ++
Sbjct: 73  FEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYV---VLSCRTQE-KRSSVASGQGTTPNWNENFVF 58
              L V ++ A+ L   D  S  +PYV   +L  R+++ KR +    +   P WN+ F +
Sbjct: 15  TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEY 74

Query: 59  T-ISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVF 94
           + +         L++ + D D   ++DF+GE +I L    
Sbjct: 75  SNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL 114

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 23 SNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-----TTALKLKIMDSDTV 77
           N+DP V +    Q+K +SV  G    P +NE F F   E         +K+ + DS ++
Sbjct: 19 GNIDPVVKVEVGGQKKYTSVKKGT-NCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77

Query: 78 SQDDFVGEAIIPLHSVFE 95
            D  +G   + + +V++
Sbjct: 78 RSDTLIGSFKLDVGTVYD 95

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 6  LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTT 65
          L++ +  AK L+        DPYV ++   Q  + +  S + + P WNE+F   ++  +T
Sbjct: 4  LQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQST 62

Query: 66 ALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGN 98
           L+ K+    T+  D  +GEA + L  + +  N
Sbjct: 63 -LEFKVWSHHTLKADVLLGEASLDLSDILKNHN 94

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 20/95 (21%), Positives = 41/95 (43%)

Query: 4  GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
          G L + +  A  L++ + +  +DPYV +      K  +V       P W+E     ++  
Sbjct: 1  GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP 60

Query: 64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGN 98
             + L++MD + V +D  +G   I +  + +   
Sbjct: 61 NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNE 95

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 15/103 (14%)

Query: 9   LLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT--------PNWNENFVFT- 59
           L +  + L D D LS  DP+VV+  +T      V  G+  T        P++   F    
Sbjct: 5   LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGR--TEVIKNNLNPDFVTTFTVDY 62

Query: 60  ISEGTTALKLKIMDSD----TVSQDDFVGEAIIPLHSVFEAGN 98
             E    L+ ++ D D     +S  DF+GEA   L  +  +  
Sbjct: 63  YFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPG 105

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 4   GTLEVLLVCAKGL--QDTDFLSNMDPYVVLSCRTQEK--RSSVASGQGTTPNWNEN-FVF 58
           G L V +  A  L   D    S+ DPYV  S     K   S+    +   P W E  FV 
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSS-DPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVL 59

Query: 59  TISEGTTA---LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGN 98
              +   A   L  ++ DSD  + DD +G   I L  + E  N
Sbjct: 60  VTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDRN 102

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 26  DPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTA------LKLKIMDSDTVSQ 79
           D YV++    ++  +SV   + T+P W E   F +    +       L+L +M  + +  
Sbjct: 21  DAYVIIQLGKEKYSTSVKE-KTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79

Query: 80  DDFVGEAIIPLHSVFEAGNVPQQAYNVV-----KDKKFQGEVRV 118
           D F+G+  IPL+ + E     +  +  +     KD K +GE+ V
Sbjct: 80  DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEV 123

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 35/123 (28%)

Query: 6   LEVLLVCAKGLQ--DTDFLSNMDPYVVL------------SCRTQEKRSSVASGQGTTPN 51
           L V ++ A+ L   D++  S  DP+V +            + +TQ K+ ++       P 
Sbjct: 18  LRVEILNARNLLPLDSNGSS--DPFVKVELLPRHLFPDVPTPKTQVKKKTL------FPL 69

Query: 52  WNENFVFTIS------EGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYN 105
           ++E+F F +       EG   L   + D D +  +DF GEA +PL       ++P     
Sbjct: 70  FDESFEFNVPPEQCSVEGAL-LLFTVKDYDLLGSNDFEGEAFLPL------NDIPGVEDT 122

Query: 106 VVK 108
              
Sbjct: 123 SSA 125

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 8  VLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI-SEGTTA 66
          ++LV  K L   D     DPYV      ++ +S V S     P W E F   +  + +  
Sbjct: 4  IVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKT-LNPQWLEQFDLHLFDDQSQI 62

Query: 67 LKLKIMDSDTVSQDDFVG 84
          L++++ D DT  +D+F+G
Sbjct: 63 LEIEVWDKDTGKKDEFIG 80

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNM-DPYV---VLSCRT-QEKRSSVASGQGTTPNWNENFVF 58
           G+LEV +   + L   D      +PYV   +L  ++ Q KR +      T P +NE   +
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73

Query: 59  TISEG---TTALKLKIMDSDTVSQDDFVGEAIIPLHS 92
            IS+    T  L+L +   D   ++ F+GE  IPL S
Sbjct: 74  HISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDS 110

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 13/81 (16%)

Query: 24  NMDPYVVLS-----CRTQEKRSSVASGQGTTPNWNENFVFTI--SEGTTALKLKIMDSDT 76
            +DPYV +S      +T  K++S        P WNE  VF          +K++I D D 
Sbjct: 34  LVDPYVEVSFAGQKVKTSVKKNSYN------PEWNEQIVFPEMFPPLCERIKIQIRDWDR 87

Query: 77  VSQDDFVGEAIIPLHSVFEAG 97
           V  DD +G   I L  +  +G
Sbjct: 88  VGNDDVIGTHFIDLSKISNSG 108

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip)

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 22  LSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDD 81
           L+ MDPY  +        +  A      P WN+    T+ EG  ++ ++I D    + D+
Sbjct: 19  LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDE 78

Query: 82  FVGEAIIPL-HSVFEAGNVPQ 101
            +    I +  SVF    +  
Sbjct: 79  RIAWTHITIPESVFNGETLDD 99

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 50 PNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
          P W+E F   I + T  L +K+ D D    DDF+G A + L ++
Sbjct: 46 PVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTL 89

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 6  LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTT 65
          L V L  AK L          PYV L+     ++S V   +   P W E F F +     
Sbjct: 2  LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKE-RTNNPVWEEGFTFLVRNPEN 60

Query: 66 -ALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGN 98
            L++++ D  T      +G   +PL  + +  +
Sbjct: 61 QELEIEVKDDKTGKS---LGSLTLPLSELLKEPD 91

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 29  VVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTA-LKLKIMDSDTVSQDDFVGEAI 87
           +V + R ++K +         P+WN +  F +++   + + + + D      D  +G   
Sbjct: 25  LVYTTRVKKKTN--------NPSWNASTEFLVTDRRKSRVTVVVKDDR-DRHDPVLGSVS 75

Query: 88  IPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKP 124
           I L+ + +A +V QQ + +  +   QG +R+   +KP
Sbjct: 76  ISLNDLIDATSVGQQWFPLSGNG--QGRIRISALWKP 110

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 3/116 (2%)

Query: 6   LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTT 65
           + + ++CA GL   D     DP+ V++    +  S+  + +   P WNE+F  T+   ++
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SS 60

Query: 66  ALKLKIMDSDTV--SQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVG 119
            + +++ D          F+G   I  ++V    +   Q  ++ K KK       G
Sbjct: 61  IITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRG 116

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 19/81 (23%), Positives = 37/81 (45%)

Query: 5  TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGT 64
          +L + +V  K L   D   + DPY ++    +    +    +   P W E +   +  G 
Sbjct: 1  SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGF 60

Query: 65 TALKLKIMDSDTVSQDDFVGE 85
            +   ++D DT+S+DD +G+
Sbjct: 61 HTVSFYVLDEDTLSRDDVIGK 81

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176040 cd08394, C2A_Munc13, C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 28 YVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAI 87
          YV L  + Q  +S+  + +G+ P W ++F+F I+     L +++  +  +  D  VG   
Sbjct: 23 YVTL--KVQNVKSTTIAVRGSQPCWEQDFMFEINRLDLGLVIELW-NKGLIWDTLVGTVW 79

Query: 88 IPLHSV 93
          IPL ++
Sbjct: 80 IPLSTI 85

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 21/94 (22%)

Query: 26  DPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIM--------- 72
           DP+  ++     +T  KR+ V   +   P ++E F F ++ G +  K             
Sbjct: 20  DPFARVTLNYSSKTDTKRTKVKK-KTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78

Query: 73  -------DSDTVSQDDFVGEAIIPLHSVFEAGNV 99
                   +  VS DDF+GE  IPL  + +AG+ 
Sbjct: 79  ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSH 112

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 36 QEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
          Q  R+  +  +   P+WNE  +F  +E     L L + D    ++D+ +G A+IPL+ +
Sbjct: 32 QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDI 90

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC-----RTQEKRSSVASGQGTTPNWNENFVF 58
           G L V ++ AK L  TD     DP+V +         + K++S   G    P +NE+F F
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGT-IDPFYNESFSF 72

Query: 59  TISEGT---TALKLKIMDSDTVSQDDFVGEAII 88
            + +      +L   +   +  S +DF+G  +I
Sbjct: 73  KVPQEELENVSLVFTVYGHNVKSSNDFIGRIVI 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVF---TI 60
            TL V ++ A GL   D+ ++ D YV +    QEKR+ V       P WN  F F    +
Sbjct: 28  ATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNN-NNPRWNATFDFGSVEL 85

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQ 102
           S G   L+ ++ D D    DD +G   +       AG     
Sbjct: 86  SPGGK-LRFEVWDRDNGWDDDLLGTCSVVPE----AGVHEDS 122

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE- 62
           G L V++V  + L+  +     DPY  +S  +QE ++ V S     P WN +  F + + 
Sbjct: 15  GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDT-LNPKWNSSMQFFVKDL 73

Query: 63  GTTALKLKIMDSDTVSQDDFVGEAIIPL 90
               L + + D D  S DDF+G   I +
Sbjct: 74  EQDVLCITVFDRDFFSPDDFLGRTEIRV 101

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT--PNWNENFVFTI 60
              L V ++ A  L   D     DPYV +     +K+         T  P +NE F F +
Sbjct: 15  SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKV 74

Query: 61  --SE-GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQ 101
             SE G   L   + D D  S+ D +GE  +PL +V       +
Sbjct: 75  PYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEE 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 23/106 (21%)

Query: 1  MPKGTLEVLLVCAKGLQDTDF----------LSNMDPYVVLSCRTQEKRSSVASGQGTT- 49
          M  GTL++ +  A  L+ TD+             +DPYV +             G+ +T 
Sbjct: 1  MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDV------DDTHIGKTSTK 54

Query: 50 -----PNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPL 90
               P WNE F   +  G   L+L +     +  DDFV    I  
Sbjct: 55 PKTNSPVWNEEFTTEVHNGRN-LELTVFHDAAIGPDDFVANCTISF 99

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 12/68 (17%)

Query: 26 DPYVVL------SCRTQEKRSSVASGQGT-TPNWNENFVFTISEGT--TALKLKIMDSDT 76
          DPYV L         T++K  ++   + T  P WNE F F +        L +++ D D 
Sbjct: 35 DPYVKLKLIPDPKNETKQKTKTI---KKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91

Query: 77 VSQDDFVG 84
           +++DF+G
Sbjct: 92 TTRNDFMG 99

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR---TQEKRSSVASGQGT-TPNWNENFVF 58
           +  L V ++    L   D     DP+V L  +    ++ +      + T  P +NE F +
Sbjct: 12  RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFY 71

Query: 59  TISEGTTA---LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK--DKKFQ 113
            I     A   L++ + D D    +D++G   + +++  E     +   + +K  DKK +
Sbjct: 72  DIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERL---RHWLDCLKNPDKKIE 128

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLS-NMDPYVVLSCRTQEKRSSVASG---QGTTPNWNENF 56
             K  L V ++  + L   D  S   DPYV L     EK   V +    +   P ++E F
Sbjct: 13  SEKKALLVNIIECRDLPAMDEQSGTSDPYVKL-QLLPEKEHKVKTRVLRKTRNPVYDETF 71

Query: 57  VF-TISEG---TTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            F  I        +L   ++  D  S+DD +GE + PL   
Sbjct: 72  TFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGA 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.95
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.92
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.91
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.91
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.91
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.9
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.9
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.9
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.9
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.9
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.89
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.89
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.89
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.89
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.89
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.88
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.88
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.88
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.88
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.88
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.88
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.88
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.87
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.87
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.86
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.86
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.86
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.86
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.86
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.86
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.85
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.85
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.85
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.84
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.84
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.84
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.84
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.84
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.84
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.84
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.84
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.84
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.83
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.83
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.83
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.83
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.82
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.82
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.82
PLN03008	868	Phospholipase D delta	99.82
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.82
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.82
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.81
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.81
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.8
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.8
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.8
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.79
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.79
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.79
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.79
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.79
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.79
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.78
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.78
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.78
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.78
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.78
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.78
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.78
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.77
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.76
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.76
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.76
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.76
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.76
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.76
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.75
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.75
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.74
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.74
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.73
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.71
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.71
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.71
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.71
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.7
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.7
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.69
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.69
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.68
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.67
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.67
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.67
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.65
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.64
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.57
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.57
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.55
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.54
PLN02270	808	phospholipase D alpha	99.53
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.51
PLN02223	537	phosphoinositide phospholipase C	99.39
PLN02952	599	phosphoinositide phospholipase C	99.38
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.35
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.33
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.32
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.3
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.29
PLN02230	598	phosphoinositide phospholipase C 4	99.28
PLN02352	758	phospholipase D epsilon	99.26
PLN02222	581	phosphoinositide phospholipase C 2	99.22
PLN02228	567	Phosphoinositide phospholipase C	99.2
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	99.19
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.17
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.06
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.89
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.75
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.52
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.5
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.44
KOG1452	442	consensus Predicted Rho GTPase-activating protein	98.33
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.16
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	98.14
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.09
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.04
PLN02964	644	phosphatidylserine decarboxylase	98.01
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.97
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.89
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	97.82
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.8
PF15627	156	CEP76-C2: CEP76 C2 domain	97.73
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.7
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.55
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	97.52
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	97.39
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.22
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	97.13
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.07
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.73
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.64
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	96.56
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	95.01
KOG1327	529	consensus Copine [Signal transduction mechanisms]	94.47
KOG0694	694	consensus Serine/threonine protein kinase [Signal	94.41
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	94.31
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	94.18
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	94.15
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	93.19
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	92.64
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	91.54
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	91.48
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	90.28
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	89.22
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	88.49

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.95  E-value=2.9e-26  Score=148.65  Aligned_cols=118  Identities=21%  Similarity=0.415  Sum_probs=102.4

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCce
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDF   82 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~   82 (161)
                      .|+|.|+|++|++++..+ .+.+||||.+.++....+|++..+++.||.|||+|.|.+......|.|+|||++.+++|++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~   79 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER   79 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence            489999999999998877 7899999999999988888888756899999999999998766789999999999999999


Q ss_pred             eEEEEEeCcc-ccccCCccceeEEeec--CCeeceEEEEEEEE
Q 046962           83 VGEAIIPLHS-VFEAGNVPQQAYNVVK--DKKFQGEVRVGLTF  122 (161)
Q Consensus        83 iG~~~~~l~~-l~~~~~~~~~~~~l~~--~~~~~G~i~l~l~~  122 (161)
                      ||.+.+++.+ +..+ .....||.|..  .....|+|+|+++|
T Consensus        80 iG~~~i~l~~~~~~g-~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          80 IAWTHITIPESVFNG-ETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEEECchhccCC-CCccccEeCcCccCCCCceEEEEEEeC
Confidence            9999999974 5544 43579999973  33567999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.92  E-value=4e-24  Score=138.71  Aligned_cols=117  Identities=30%  Similarity=0.561  Sum_probs=102.8

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCce
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDF   82 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~   82 (161)
                      |.|.|+|++|++|+..+..+.+||||.+.++....+|+.+.+.+.||.|+|.|.|.+... ...|.|+|||++..+ +++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            689999999999999998899999999999987778887765689999999999999874 458999999999875 899


Q ss_pred             eEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEE
Q 046962           83 VGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTF  122 (161)
Q Consensus        83 iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~  122 (161)
                      ||++.+++.++..+.. ...|+.|...++..|+|+|+++|
T Consensus        80 iG~~~~~l~~~~~~~~-~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALKEGE-FDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhhcCC-CCCcEEeccCCcEeeEEEEEEEC
Confidence            9999999999877543 46899998777889999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.91  E-value=3.4e-23  Score=135.81  Aligned_cols=115  Identities=26%  Similarity=0.487  Sum_probs=97.6

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeC------CCCeEEEEEEecCCCCC
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE------GTTALKLKIMDSDTVSQ   79 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~------~~~~l~i~v~~~~~~~~   79 (161)
                      +.|+|++|++|+..+..+.+||||.+.++....+|++.+ ++.||+|||+|.|.+..      ....|.|+||+++.+++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~-~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~   79 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKE-KTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL   79 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeec-CCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence            479999999999998888999999999998888888777 88999999999999876      34689999999998888


Q ss_pred             CceeEEEEEeCccccc-cCCccceeEEeec----CCeeceEEEEEEE
Q 046962           80 DDFVGEAIIPLHSVFE-AGNVPQQAYNVVK----DKKFQGEVRVGLT  121 (161)
Q Consensus        80 d~~iG~~~~~l~~l~~-~~~~~~~~~~l~~----~~~~~G~i~l~l~  121 (161)
                      |++||++.+++.++.. .+.....||.|..    ..+..|+|+|+++
T Consensus        80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            9999999999999873 2234568999972    2346799999873

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.91  E-value=5.9e-23  Score=133.79  Aligned_cols=118  Identities=24%  Similarity=0.381  Sum_probs=101.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-eeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-EKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV   83 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i   83 (161)
                      +|+|+|++|++|+..+..+.+||||.+.+... ..+|++.. ++.||.|+|+|.|.+......|.|+|||++..+++++|
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~i   79 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY-KNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFM   79 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeecc-CCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcce
Confidence            48999999999999998899999999999864 44566665 89999999999999877667999999999999899999


Q ss_pred             EEEEEeCccccccCCccceeEEeec--CCeeceEEEEEEEEEe
Q 046962           84 GEAIIPLHSVFEAGNVPQQAYNVVK--DKKFQGEVRVGLTFKP  124 (161)
Q Consensus        84 G~~~~~l~~l~~~~~~~~~~~~l~~--~~~~~G~i~l~l~~~~  124 (161)
                      |++.++++++..+.. ...|+.|..  ..+..|+|+|.++|.|
T Consensus        80 G~~~~~l~~l~~~~~-~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          80 GSAFVDLSTLELNKP-TEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             EEEEEEHHHcCCCCC-eEEEEECCCCCCccCceEEEEEEEECC
Confidence            999999999987544 357888872  2367899999999976

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.91  E-value=7.1e-23  Score=133.81  Aligned_cols=121  Identities=28%  Similarity=0.470  Sum_probs=102.3

Q ss_pred             CeEEEEEEEeecCCCCCCC-CCCCCcEEEEEEcC--eeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCC
Q 046962            3 KGTLEVLLVCAKGLQDTDF-LSNMDPYVVLSCRT--QEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQ   79 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~-~~~~dp~v~i~~~~--~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~   79 (161)
                      .|.|.|+|++|++|+..+. .+.+||||.+.+..  ...+|+.+. ++.+|.|+|.|.|.+......|.|+|||.+..++
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~-~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~   79 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKK-DTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRK   79 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeec-CCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCC
Confidence            4889999999999996553 45789999999987  556666665 8999999999999988656799999999998889


Q ss_pred             CceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEEe
Q 046962           80 DDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKP  124 (161)
Q Consensus        80 d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~~  124 (161)
                      +++||.+.+++.++.........++.+...++..|+|+++++|.|
T Consensus        80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          80 DKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence            999999999999999865543345556677788999999999986

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.90  E-value=1e-22  Score=133.77  Aligned_cols=118  Identities=25%  Similarity=0.375  Sum_probs=100.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEecCCCC-C
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDSDTVS-Q   79 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~~~~~-~   79 (161)
                      +|.|+|++|++|+..+..+.+||||.+.+.....+|+++. ++.||.|||.|.|.+...    ...|.|+||+.+.++ .
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~   79 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKP-KDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR   79 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEc-CCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence            5899999999999998888999999999998888888776 899999999999998754    247999999998876 8


Q ss_pred             CceeEEEEEeCccccccCCccceeEEeec---CCeeceEEEEEEEEE
Q 046962           80 DDFVGEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLTFK  123 (161)
Q Consensus        80 d~~iG~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~~  123 (161)
                      +++||++.++++++...+.....||.|..   .....|+|+|++.+.
T Consensus        80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            99999999999999854445578999973   235789999999874

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.90  E-value=5.7e-22  Score=131.44  Aligned_cols=120  Identities=26%  Similarity=0.421  Sum_probs=100.3

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCC
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQD   80 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d   80 (161)
                      ..|.|.|+|++|++|+..+..+.+||||.+.++....+|+++. ++.||.|+++|.|.+... ...|.|+|||++..++|
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~-~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d   91 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVS-DTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD   91 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccC-CCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence            3589999999999999999889999999999998888888877 899999999999998764 35899999999998899


Q ss_pred             ceeEEEEEeCccccccC--CccceeEEeecCCeeceEEEEEEEE
Q 046962           81 DFVGEAIIPLHSVFEAG--NVPQQAYNVVKDKKFQGEVRVGLTF  122 (161)
Q Consensus        81 ~~iG~~~~~l~~l~~~~--~~~~~~~~l~~~~~~~G~i~l~l~~  122 (161)
                      ++||++.+++.++....  .....+..+.......|+|+|++.|
T Consensus        92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          92 DFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            99999999999998621  1122223333467788999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.90  E-value=8.9e-22  Score=130.07  Aligned_cols=120  Identities=23%  Similarity=0.429  Sum_probs=101.2

Q ss_pred             CCCeEEEEEEEeecCCCCCCCC----------CCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEE
Q 046962            1 MPKGTLEVLLVCAKGLQDTDFL----------SNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLK   70 (161)
Q Consensus         1 ~~~g~l~v~i~~a~~L~~~~~~----------~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~   70 (161)
                      |.+|.|.|+|++|++|+..+..          +.+||||.+.++++...++.+.+++.+|.|||+|.|.+.. ...|.|.
T Consensus         1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~   79 (132)
T cd04014           1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELT   79 (132)
T ss_pred             CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEE
Confidence            7889999999999999988752          5789999999987765444444589999999999999974 4789999


Q ss_pred             EEecCCCCCCceeEEEEEeCcccccc-CCccceeEEeecCCeeceEEEEEEEEEeC
Q 046962           71 IMDSDTVSQDDFVGEAIIPLHSVFEA-GNVPQQAYNVVKDKKFQGEVRVGLTFKPE  125 (161)
Q Consensus        71 v~~~~~~~~d~~iG~~~~~l~~l~~~-~~~~~~~~~l~~~~~~~G~i~l~l~~~~~  125 (161)
                      ||+++..+++++||++.++|+++... ......|+.|    .+.|+|++.+.|...
T Consensus        80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L----~~~G~l~l~~~~~~~  131 (132)
T cd04014          80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDL----EPQGKLHVKIELKGS  131 (132)
T ss_pred             EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEc----cCCcEEEEEEEEecC
Confidence            99999888899999999999998873 3445789999    467999999998753

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.90  E-value=6e-22  Score=128.60  Aligned_cols=116  Identities=24%  Similarity=0.462  Sum_probs=101.0

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV   83 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i   83 (161)
                      |.|.|+|++|++|+..+..+.+||||.+.+.....+|+.+. ++.||.|+++|.|.+......|.|+|||++..+++++|
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY-KTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFL   79 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceec-CCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCcee
Confidence            68999999999999998888999999999988777777776 89999999999999876567999999999988899999


Q ss_pred             EEEEEeCccccccCCccceeEEeec---CCeeceEEEEEEEEE
Q 046962           84 GEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLTFK  123 (161)
Q Consensus        84 G~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~~  123 (161)
                      |++.+++.++..+.   ..||.|..   ..+..|+|++++.+.
T Consensus        80 G~~~~~l~~~~~~~---~~~~~l~~~~~~~~~~G~i~l~~~~~  119 (119)
T cd08377          80 GKVAIPLLSIKNGE---RKWYALKDKKLRTRAKGSILLEMDVI  119 (119)
T ss_pred             eEEEEEHHHCCCCC---ceEEECcccCCCCceeeEEEEEEEeC
Confidence            99999999987542   47999872   345799999999873

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.90  E-value=6.1e-22  Score=129.88  Aligned_cols=118  Identities=25%  Similarity=0.461  Sum_probs=99.5

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcC--eeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT--QEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV   83 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~--~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i   83 (161)
                      |.|+|++|++|+.  ..+.+||||.+.+..  ...+|++.. ++.||.|+|.|.|.+......|.|+|||++..+++++|
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~l   77 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQK-NTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFL   77 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEe-cCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceE
Confidence            5799999999987  568999999999974  345666665 88999999999999976667899999999998899999


Q ss_pred             EEEEEeCccccccCCccceeEEeec----CCeeceEEEEEEEEEeCCC
Q 046962           84 GEAIIPLHSVFEAGNVPQQAYNVVK----DKKFQGEVRVGLTFKPEGG  127 (161)
Q Consensus        84 G~~~~~l~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~~~~~  127 (161)
                      |++.+++.++...... ..|+.|..    .....|+|.+++.|.+.++
T Consensus        78 G~~~i~l~~l~~~~~~-~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~  124 (126)
T cd08678          78 GLAIVPFDELRKNPSG-RQIFPLQGRPYEGDSVSGSITVEFLFMEPAE  124 (126)
T ss_pred             EEEEEeHHHhccCCce-eEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence            9999999999876443 57898873    2457899999999987663

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.89  E-value=6.9e-22  Score=128.65  Aligned_cols=115  Identities=22%  Similarity=0.312  Sum_probs=96.5

Q ss_pred             EEEEEEeecCCCCCC-CCCCCCcEEEEEEcCee-eEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962            6 LEVLLVCAKGLQDTD-FLSNMDPYVVLSCRTQE-KRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV   83 (161)
Q Consensus         6 l~v~i~~a~~L~~~~-~~~~~dp~v~i~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i   83 (161)
                      |.|+|++|++|+..+ ..+.+||||.+.+.... .+|++.+ +++||.|+|+|.|.+......|.|.||+++..+++++|
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~-kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~i   80 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVE-KSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVI   80 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEE-CCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceE
Confidence            789999999999874 45689999999997654 4566655 89999999999999987667999999999999899999


Q ss_pred             EEEEEeCccccccCCccceeEEeec---CCeeceEEEEEEEE
Q 046962           84 GEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLTF  122 (161)
Q Consensus        84 G~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~  122 (161)
                      |.+.++++++.... ....||.|..   ..+..|+|+|+++|
T Consensus        81 G~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          81 GKVAIKKEDLHKYY-GKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEEHHHccCCC-CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            99999999998653 3468999972   34468999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.89  E-value=8.3e-22  Score=130.35  Aligned_cols=118  Identities=22%  Similarity=0.484  Sum_probs=99.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-------eeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCC
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-------EKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTV   77 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-------~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~   77 (161)
                      .|+|+|++|++|+..+..+.+||||.+.+...       ..+|.++. ++.||.|+++|.|.+......|.|+|||++.+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KTLNPKWNEEFFFRVNPREHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEc-CCCCCcEeeEEEEEEcCCCCEEEEEEEECCCC
Confidence            38999999999999998889999999998754       34566665 89999999999999977667899999999999


Q ss_pred             CCCceeEEEEEeCccccccCC-----ccceeEEeec---CCeeceEEEEEEEEE
Q 046962           78 SQDDFVGEAIIPLHSVFEAGN-----VPQQAYNVVK---DKKFQGEVRVGLTFK  123 (161)
Q Consensus        78 ~~d~~iG~~~~~l~~l~~~~~-----~~~~~~~l~~---~~~~~G~i~l~l~~~  123 (161)
                      +++++||++.+++.++.....     ....||.|..   .++..|+|+|++.|.
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            899999999999999887432     3468999972   356789999999883

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.89  E-value=9.5e-22  Score=132.28  Aligned_cols=121  Identities=23%  Similarity=0.377  Sum_probs=102.4

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCceeE
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFVG   84 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~iG   84 (161)
                      |.|+|++|++|+..+..+.+||||.+.++++..+|++..+++.||.|||.|.|.+... ...|.|+||+++..+++++||
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG   81 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG   81 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence            7899999999999999899999999999998888888874579999999999998654 358999999999887899999


Q ss_pred             EEEEeCcccccc---CCccceeEEeecC---------CeeceEEEEEEEEEeCC
Q 046962           85 EAIIPLHSVFEA---GNVPQQAYNVVKD---------KKFQGEVRVGLTFKPEG  126 (161)
Q Consensus        85 ~~~~~l~~l~~~---~~~~~~~~~l~~~---------~~~~G~i~l~l~~~~~~  126 (161)
                      ++.++|+++..+   ......||.|...         .+..|+|+|.+.|.+..
T Consensus        82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~  135 (150)
T cd04019          82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY  135 (150)
T ss_pred             EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence            999999998753   2335689999732         24569999999998443

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.89  E-value=8.7e-22  Score=128.46  Aligned_cols=111  Identities=23%  Similarity=0.413  Sum_probs=95.4

Q ss_pred             EEEEEEeecC---CCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCC-----
Q 046962            6 LEVLLVCAKG---LQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTV-----   77 (161)
Q Consensus         6 l~v~i~~a~~---L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~-----   77 (161)
                      |+|+|++|++   |+..+..+.+||||.+.++.+..+|+++. ++.||+|||+|.|.+......|.|+|||.+..     
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~-~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVE-DSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCccc-CCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            7899999999   88888889999999999999988888887 89999999999999987667899999999876     


Q ss_pred             -CCCceeEEEEEeCccccccCCccceeEEeec----CCeeceEEEE
Q 046962           78 -SQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK----DKKFQGEVRV  118 (161)
Q Consensus        78 -~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~----~~~~~G~i~l  118 (161)
                       .+|++||++.+++..+..+.. ...||.|..    ..+..|+|+.
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRV-YAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCE-EeeEEEeEeCCCCCccCCcEEEe
Confidence             389999999999999987643 468999872    2456677764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.89  E-value=1.3e-21  Score=128.57  Aligned_cols=118  Identities=28%  Similarity=0.431  Sum_probs=100.4

Q ss_pred             eEEEEEEEeecCCCCCCC--CCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeC-CCCeEEEEEEecCCCCCC
Q 046962            4 GTLEVLLVCAKGLQDTDF--LSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE-GTTALKLKIMDSDTVSQD   80 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~--~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~l~i~v~~~~~~~~d   80 (161)
                      |.|.|+|++|++|+..+.  .+.+||||.+.++....+|+.++ ++.+|.|++.|.|.+.. ....|.|+|||++..+++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~   79 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP-NTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK   79 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceec-CCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            689999999999999887  78999999999988777777776 89999999999999986 357999999999988899


Q ss_pred             ceeEEEEEeCcccccc--CCccceeEEeecC-----CeeceEEEEEEEE
Q 046962           81 DFVGEAIIPLHSVFEA--GNVPQQAYNVVKD-----KKFQGEVRVGLTF  122 (161)
Q Consensus        81 ~~iG~~~~~l~~l~~~--~~~~~~~~~l~~~-----~~~~G~i~l~l~~  122 (161)
                      ++||++.+++.++...  ......||.|...     ....|+|+|++++
T Consensus        80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            9999999999998742  2335689998732     3368999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.88  E-value=2.5e-21  Score=126.09  Aligned_cols=115  Identities=23%  Similarity=0.435  Sum_probs=97.5

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeee-EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCceeE
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVG   84 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG   84 (161)
                      |.|+|++|++|+..+..+.+||||.+.+.+... +|+.+. ++.||.|+|.|.|.+......|.|+||+++..+++++||
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG   80 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVW-KTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIG   80 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEc-CCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEE
Confidence            789999999999999889999999999976554 566665 899999999999998776679999999999998999999


Q ss_pred             EEEEeCccccccCCccceeEEeec---CCeeceEEEEEEE
Q 046962           85 EAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLT  121 (161)
Q Consensus        85 ~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~  121 (161)
                      ++.++++.+.........|+.|..   .....|+|++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          81 KVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            999999888764444568999962   3456899998875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.88  E-value=4e-21  Score=125.96  Aligned_cols=117  Identities=19%  Similarity=0.327  Sum_probs=96.4

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEecCCCCCCce
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGT-TALKLKIMDSDTVSQDDF   82 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~~~~~~~d~~   82 (161)
                      ..|+|+|++|++|+..   +.+||||.+.+++....++.+. ++.||.|||+|.|.+.... ..+.|.|||++..+++++
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~   79 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE   79 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence            5799999999999875   3689999999987654444445 6899999999999865543 478999999999999999


Q ss_pred             eEEEEEeCccccccCCccceeEEeec----CCeeceEEEEEEEEEeC
Q 046962           83 VGEAIIPLHSVFEAGNVPQQAYNVVK----DKKFQGEVRVGLTFKPE  125 (161)
Q Consensus        83 iG~~~~~l~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~~~  125 (161)
                      ||++.++|+++..+.. ...||.|..    .....|+|+|+++|.+.
T Consensus        80 iG~v~i~l~~l~~~~~-~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          80 IAEVTVQLSKLQNGQE-TDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             EEEEEEEHhHccCCCc-ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence            9999999999887544 468999973    24567999999999864

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.88  E-value=4.5e-21  Score=127.17  Aligned_cols=120  Identities=21%  Similarity=0.369  Sum_probs=100.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeC----------CCCeEEEEEEec
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE----------GTTALKLKIMDS   74 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~----------~~~~l~i~v~~~   74 (161)
                      .|+|+|++|++|+..+..+.+||||++.+.....+|++++ ++.||.|++.|.|.+..          ....|.++|||+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            5899999999999999989999999999988877877776 89999999999997432          124689999999


Q ss_pred             CCCCCCceeEEEEE-eCcccccc--CCccceeEEeecCCeeceEEEEEEEEEeC
Q 046962           75 DTVSQDDFVGEAII-PLHSVFEA--GNVPQQAYNVVKDKKFQGEVRVGLTFKPE  125 (161)
Q Consensus        75 ~~~~~d~~iG~~~~-~l~~l~~~--~~~~~~~~~l~~~~~~~G~i~l~l~~~~~  125 (161)
                      +..++|++||++.+ ++..+...  ......|+.|...+...|+|++++.+.+.
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV  134 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence            99989999999986 55545432  23456899998777789999999999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.88  E-value=3.1e-21  Score=124.74  Aligned_cols=114  Identities=25%  Similarity=0.411  Sum_probs=98.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCcee
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFV   83 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~i   83 (161)
                      .++|+|++|++|+..+..+.+||||.+.+.+...+|++.. ++.||.|+|+|.|.+... ...|.|+|||++..+++++|
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i   79 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCS-KTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI   79 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEeccccc-CCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence            3789999999999999888999999999988777777766 899999999999998776 46899999999998899999


Q ss_pred             EEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEE
Q 046962           84 GEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFK  123 (161)
Q Consensus        84 G~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~  123 (161)
                      |++.++++++..+.. ...|+.|...   .|+|++.+.|.
T Consensus        80 G~~~~~l~~l~~~~~-~~~w~~L~~~---~G~~~~~~~~~  115 (116)
T cd08376          80 GRCEIDLSALPREQT-HSLELELEDG---EGSLLLLLTLT  115 (116)
T ss_pred             EEEEEeHHHCCCCCc-eEEEEEccCC---CcEEEEEEEec
Confidence            999999999887543 5689988422   59999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.88  E-value=7.8e-21  Score=124.60  Aligned_cols=119  Identities=21%  Similarity=0.402  Sum_probs=101.8

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCc
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~   81 (161)
                      |...|+|+|++|++|+..+..+.+||||.+.++....+|++.. ++.+|.|+|.|.|.+......|.|+|||++.. .|+
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~   78 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQK-DTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDE   78 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccC-CCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCC
Confidence            5688999999999999998889999999999998888888776 89999999999998877767999999999877 589


Q ss_pred             eeEEEEEeCccccccCCccceeEEee-----cCCeeceEEEEEEEEEeC
Q 046962           82 FVGEAIIPLHSVFEAGNVPQQAYNVV-----KDKKFQGEVRVGLTFKPE  125 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~l~-----~~~~~~G~i~l~l~~~~~  125 (161)
                      +||.+.+++.++..   ....++.|.     ..+...|+|.|++.+.+.
T Consensus        79 ~lG~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~  124 (126)
T cd04046          79 FLGQATLSADPNDS---QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD  124 (126)
T ss_pred             ceEEEEEecccCCC---cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence            99999999987643   234677774     456788999999987753

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.88  E-value=3.1e-21  Score=125.60  Aligned_cols=111  Identities=25%  Similarity=0.425  Sum_probs=94.1

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCceeE
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFVG   84 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~iG   84 (161)
                      |.|+|++|++|+..    .+||||.+.+.+...+|++++ ++.||.|||+|.|.+... ...|.|+|||++.. .+++||
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~-~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG   75 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIE-RTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG   75 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccC-CCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence            78999999999887    689999999988777777776 899999999999998763 56899999999977 789999


Q ss_pred             EEEEeCccccccC----CccceeEEeec--CCeeceEEEEEEEE
Q 046962           85 EAIIPLHSVFEAG----NVPQQAYNVVK--DKKFQGEVRVGLTF  122 (161)
Q Consensus        85 ~~~~~l~~l~~~~----~~~~~~~~l~~--~~~~~G~i~l~l~~  122 (161)
                      ++.++++++....    .....||.|..  ..+..|+|+|++.|
T Consensus        76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            9999999987632    22458999973  34688999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.88  E-value=5e-21  Score=125.03  Aligned_cols=114  Identities=25%  Similarity=0.464  Sum_probs=98.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCcee
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFV   83 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~i   83 (161)
                      +|+|+|++|++|+..+..+.+||||.+.++....+|+++. ++.||.|+|+|.|.+... ...|.|+|||++..+++++|
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVK-KSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL   79 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeec-CCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence            4899999999999998888899999999988777777776 899999999999998775 35899999999998899999


Q ss_pred             EEEEEeCccccccCCccceeEEeec-------CCeeceEEEEEE
Q 046962           84 GEAIIPLHSVFEAGNVPQQAYNVVK-------DKKFQGEVRVGL  120 (161)
Q Consensus        84 G~~~~~l~~l~~~~~~~~~~~~l~~-------~~~~~G~i~l~l  120 (161)
                      |++.++++++..... ...||.|..       ..+..|.|++.|
T Consensus        80 G~~~~~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          80 GKVVFSIQTLQQAKQ-EEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EEEEEEHHHcccCCC-CCCEEECCCCCCCCccccCceEEEEEEe
Confidence            999999999976533 468999872       456779998876

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.87  E-value=1.4e-21  Score=130.08  Aligned_cols=97  Identities=42%  Similarity=0.684  Sum_probs=91.0

Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCC
Q 046962            1 MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQD   80 (161)
Q Consensus         1 ~~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d   80 (161)
                      |+.|.|.|+|++|.+|...|..+.+||||.+.+++++.+|+.+. +++||+|||.|.|.+..+...|.++|||+|.+..|
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~-~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~d   81 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVY-KNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSD   81 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeec-CCCCCcccceEEEEecCCCceEEEEEEeCCCCCcc
Confidence            67899999999999999999889999999999999999999777 99999999999999999988999999999999999


Q ss_pred             ceeEEEEEeCccccccCC
Q 046962           81 DFVGEAIIPLHSVFEAGN   98 (161)
Q Consensus        81 ~~iG~~~~~l~~l~~~~~   98 (161)
                      ++||.+.++|..+.....
T Consensus        82 D~mG~A~I~l~p~~~~~~   99 (168)
T KOG1030|consen   82 DFMGEATIPLKPLLEAQK   99 (168)
T ss_pred             cccceeeeccHHHHHHhh
Confidence            999999999998877543

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.87  E-value=1.9e-20  Score=127.04  Aligned_cols=118  Identities=25%  Similarity=0.447  Sum_probs=97.4

Q ss_pred             CeEEEEEEEeecCCCCCCC------------------------------CCCCCcEEEEEEcCeee-EEEEeeCCCCCCe
Q 046962            3 KGTLEVLLVCAKGLQDTDF------------------------------LSNMDPYVVLSCRTQEK-RSSVASGQGTTPN   51 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~------------------------------~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~   51 (161)
                      -|+|.|+|++|++|+.+|.                              .+.+||||.+.++.... +|+++. ++.||.
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~-~~~nP~   84 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIE-NSENPV   84 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeC-CCCCCc
Confidence            4899999999999999872                              35689999999987664 566665 889999


Q ss_pred             eccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEeec----CCeeceEEEEEEEEE
Q 046962           52 WNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK----DKKFQGEVRVGLTFK  123 (161)
Q Consensus        52 w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~  123 (161)
                      |||+|.|.+......|.|+|||++..+ +++||++.++++++..+. ....|+.|..    ..+..|+|++++.|.
T Consensus        85 WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~-~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          85 WNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGE-PVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             cceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCC-CcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            999999998777678999999999874 689999999999998753 4568999873    223458999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.86  E-value=1.5e-20  Score=122.05  Aligned_cols=113  Identities=27%  Similarity=0.433  Sum_probs=94.0

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCc
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~   81 (161)
                      |.|+|++|++|+..+..+.+||||.+.+..   ...+|+++. ++.||.|+|+|.|.+... ...|.|+|||++.. +++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~-~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~   79 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIK-NSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD   79 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceec-CCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence            789999999999998888999999999863   345666666 899999999999998765 34799999999988 899


Q ss_pred             eeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEE
Q 046962           82 FVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFK  123 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~  123 (161)
                      +||++.+++.++..+. ....|+.|.  .+..|+|++++.+.
T Consensus        80 ~iG~~~~~l~~l~~g~-~~~~~~~L~--~~~~g~l~~~~~~~  118 (119)
T cd04036          80 HLGTVLFDVSKLKLGE-KVRVTFSLN--PQGKEELEVEFLLE  118 (119)
T ss_pred             ccEEEEEEHHHCCCCC-cEEEEEECC--CCCCceEEEEEEee
Confidence            9999999999998753 346889884  34578888888763

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.86  E-value=3.1e-20  Score=121.28  Aligned_cols=114  Identities=23%  Similarity=0.505  Sum_probs=94.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEc-CeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCC--Cc
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-TQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQ--DD   81 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~--d~   81 (161)
                      .|+|+|++|++|+..+..+.+||||.+.+. ....+|++.. ++.||.|+|+|.|.+.. ...|.|+|||++.++.  ++
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~   78 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAK-KTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQG   78 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEc-CCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCc
Confidence            378999999999999988999999999996 4555666665 89999999999999976 5799999999998765  57


Q ss_pred             eeEEEEEeCccccccCCccceeEEee-----cCCeeceEEEEEE
Q 046962           82 FVGEAIIPLHSVFEAGNVPQQAYNVV-----KDKKFQGEVRVGL  120 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~l~-----~~~~~~G~i~l~l  120 (161)
                      +||++.+++.++.........|+.|.     ..+...|+|.+++
T Consensus        79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            99999999999987554445799886     1345678888876

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.86  E-value=2.3e-20  Score=121.39  Aligned_cols=114  Identities=27%  Similarity=0.445  Sum_probs=96.5

Q ss_pred             eEEEEEEEeecCCCCCCC------CCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCC
Q 046962            4 GTLEVLLVCAKGLQDTDF------LSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDT   76 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~------~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~   76 (161)
                      |.|.|+|++|++|+..+.      .+.+||||.+.++....+|+++. ++.+|.|++.|.|.+... ...|.|+|||++.
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~   79 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIK-ENLNPKWNEVYEAVVDEVPGQELEIELFDEDP   79 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccC-CCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence            679999999999998874      25799999999988777777776 899999999999998753 4699999999998


Q ss_pred             CCCCceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEE
Q 046962           77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTF  122 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~  122 (161)
                      . ++++||++.+++.++...+. ...||.|.  ....|+|++.++|
T Consensus        80 ~-~~~~iG~~~i~l~~l~~~~~-~~~w~~L~--~~~~G~~~~~~~~  121 (121)
T cd08391          80 D-KDDFLGRLSIDLGSVEKKGF-IDEWLPLE--DVKSGRLHLKLEW  121 (121)
T ss_pred             C-CCCcEEEEEEEHHHhcccCc-cceEEECc--CCCCceEEEEEeC
Confidence            8 89999999999999987543 46899994  2357999998864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.86  E-value=8e-21  Score=124.37  Aligned_cols=114  Identities=25%  Similarity=0.486  Sum_probs=97.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-eeeEEEEeeCCCCCCeeccEEEEEEeCC-----CCeEEEEEEecCCCC
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-QEKRSSVASGQGTTPNWNENFVFTISEG-----TTALKLKIMDSDTVS   78 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~-----~~~l~i~v~~~~~~~   78 (161)
                      +|.|+|++|++|+..+..+.+||||.+.+.. ...+|.+...++.+|.|+|.|.|.+...     ...|.|+||+++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4899999999999998888999999999987 5566666654689999999999998776     468999999999888


Q ss_pred             CCceeEEEEEeCccccccCCc----cceeEEee-cCCeeceEEEE
Q 046962           79 QDDFVGEAIIPLHSVFEAGNV----PQQAYNVV-KDKKFQGEVRV  118 (161)
Q Consensus        79 ~d~~iG~~~~~l~~l~~~~~~----~~~~~~l~-~~~~~~G~i~l  118 (161)
                      .+++||++.+++.++......    ...||.|. .+++..|.|++
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            899999999999999886543    36899998 57788888864

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.86  E-value=8e-21  Score=121.69  Aligned_cols=99  Identities=20%  Similarity=0.271  Sum_probs=79.8

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDT   76 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~   76 (161)
                      .++|+|+|++|++|+ .  .+.+||||++++..   ..++++.++++++||+|||+|.|.+...   ...|.|+|||++.
T Consensus        13 ~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr   89 (118)
T cd08677          13 KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR   89 (118)
T ss_pred             CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC
Confidence            579999999999998 2  36699999999963   1334455555999999999999998765   3479999999999


Q ss_pred             CCCCceeEEEEEeCccccccCCccceeEE
Q 046962           77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYN  105 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~  105 (161)
                      ++++++||++.++++++....+. ..|..
T Consensus        90 fs~~d~IG~v~l~l~~~~~~~~~-~~W~~  117 (118)
T cd08677          90 FSRHSTLGELRLKLADVSMMLGA-AQWVD  117 (118)
T ss_pred             CCCCceEEEEEEccccccCCccc-cchhc
Confidence            99999999999999987554332 35654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.86  E-value=4.4e-20  Score=121.17  Aligned_cols=113  Identities=29%  Similarity=0.574  Sum_probs=94.7

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCC------
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTV------   77 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~------   77 (161)
                      .+|+|+|++|++|+..+..+.+||||.+.++....+|+.+. ++.+|.|+|.|.|.+......|.|+|||++..      
T Consensus         1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~-~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~   79 (127)
T cd04027           1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLK   79 (127)
T ss_pred             CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceec-CCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccc
Confidence            37899999999999999888999999999987777777776 89999999999999876657899999998852      


Q ss_pred             -----CCCceeEEEEEeCccccccCCccceeEEeec---CCeeceEEEEEE
Q 046962           78 -----SQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGL  120 (161)
Q Consensus        78 -----~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l  120 (161)
                           +.+++||++.+++.++...   ...||.|..   .....|+|++++
T Consensus        80 ~~~~~~~~~~iG~~~i~l~~~~~~---~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          80 QKFTRESDDFLGQTIIEVRTLSGE---MDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             eeccccCCCcceEEEEEhHHccCC---CCeEEECccCCCCCcEeEEEEEEC
Confidence                 4689999999999987533   358999973   345789998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.85  E-value=1.6e-20  Score=122.40  Aligned_cols=101  Identities=26%  Similarity=0.417  Sum_probs=84.7

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeC----CCCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISE----GTTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~l~i~v~~   73 (161)
                      .++|.|.|++|++|+..+ .+.+||||++.+..     ...+|++.+ ++.||.|||+|.|++..    ....|.|+|||
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d   89 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVR-KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS   89 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccC-CCCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence            478999999999999999 88999999999963     234556655 89999999999999722    24589999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      ++.++++++||++.++|.++.... ....||.|
T Consensus        90 ~d~~~~~~~lG~~~i~l~~l~~~~-~~~~W~~L  121 (122)
T cd08381          90 HDSLVENEFLGGVCIPLKKLDLSQ-ETEKWYPL  121 (122)
T ss_pred             CCCCcCCcEEEEEEEeccccccCC-CccceEEC
Confidence            999989999999999999998653 34689976

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.85  E-value=7.8e-20  Score=118.80  Aligned_cols=105  Identities=20%  Similarity=0.376  Sum_probs=90.1

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCee-eEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCce
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE-KRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDF   82 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~   82 (161)
                      |.|.|+|++|++|+..+..+.+||||.+.+.... .+|... +++.+|.|++.|.|.+......|.|+||+++..+++++
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~-~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~   79 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTI-SNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRS   79 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEE-CCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCe
Confidence            6899999999999999988999999999997654 445554 48999999999999988776899999999999989999


Q ss_pred             eEEEEEeCccccccCCccceeEEeecCCe
Q 046962           83 VGEAIIPLHSVFEAGNVPQQAYNVVKDKK  111 (161)
Q Consensus        83 iG~~~~~l~~l~~~~~~~~~~~~l~~~~~  111 (161)
                      ||++.+++.++...  ....||.|....+
T Consensus        80 IG~~~~~l~~l~~~--~~~~~~~~~~~~~  106 (120)
T cd04045          80 LGSVEINVSDLIKK--NEDGKYVEYDDEE  106 (120)
T ss_pred             eeEEEEeHHHhhCC--CCCceEEecCCCc
Confidence            99999999999886  3368998875443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.85  E-value=4.9e-20  Score=119.24  Aligned_cols=101  Identities=20%  Similarity=0.302  Sum_probs=82.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----Ce-eeEEEEeeCCCCCCeeccEEEEEEeCCC----CeEEEEEEec
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQ-EKRSSVASGQGTTPNWNENFVFTISEGT----TALKLKIMDS   74 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~----~~l~i~v~~~   74 (161)
                      +|+|+|++|++|+..+. |.+||||+|++.     .+ ++.++.+.++++||+|||+|.|.+....    ..|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCcccC-CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            58999999999998874 889999999983     22 2233444459999999999999997542    3689999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      +..+++++||++.+++.++..++. ...|+.|.
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~-~~~w~~L~  111 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGS-CACWLPLG  111 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCc-EEEEEECc
Confidence            988889999999999999998754 46899885

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.84  E-value=3.3e-20  Score=121.44  Aligned_cols=102  Identities=24%  Similarity=0.359  Sum_probs=85.6

Q ss_pred             CeEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~   73 (161)
                      .+.|.|+|++|++|+..+.. +.+||||++++..     ...+|++++ ++.||.|||+|.|.+...   ...|.|+|||
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d   92 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK-KTLNPVFNETLRYKVEREELPTRVLNLSVWH   92 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCc-CCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence            46899999999999999875 7899999999852     224555555 999999999999998643   3589999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      ++.++++++||++.++|.++... .....||.|
T Consensus        93 ~~~~~~~~~iG~~~i~L~~~~~~-~~~~~W~~L  124 (125)
T cd08393          93 RDSLGRNSFLGEVEVDLGSWDWS-NTQPTWYPL  124 (125)
T ss_pred             CCCCCCCcEeEEEEEecCccccC-CCCcceEEC
Confidence            99999999999999999999765 345689987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.84  E-value=8.1e-20  Score=121.87  Aligned_cols=104  Identities=24%  Similarity=0.330  Sum_probs=85.8

Q ss_pred             CeEEEEEEEeecCCCCCC-CCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEE-ecC
Q 046962            3 KGTLEVLLVCAKGLQDTD-FLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIM-DSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~-~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~-~~~   75 (161)
                      .+.|.|+|++|++|+..+ ..+.+||||++++...     +.+|++++ +++||+|||+|.|.+......|.|+|| +++
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k-ktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~  106 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR-KTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG  106 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC-CCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence            478999999999998864 5578999999999532     33555554 999999999999999866679999999 577


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEeec
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK  108 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~  108 (161)
                      .+.++++||++.++|.++..... ...||.|..
T Consensus       107 ~~~~~~~iG~~~i~L~~l~~~~~-~~~Wy~L~~  138 (146)
T cd04028         107 RMDKKVFMGVAQILLDDLDLSNL-VIGWYKLFP  138 (146)
T ss_pred             CCCCCceEEEEEEEcccccCCCC-ceeEEecCC
Confidence            77889999999999999865433 468999963

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.84  E-value=4.7e-20  Score=121.00  Aligned_cols=103  Identities=20%  Similarity=0.350  Sum_probs=86.4

Q ss_pred             CeEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~   73 (161)
                      .++|.|+|++|++|+..+.. +.+||||++++...     +.+|++.+ ++.||+|||+|.|.+...   ...|.+.||+
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~   92 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK-GTVNPVFNETLKYVVEADLLSSRQLQVSVWH   92 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc-CCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence            57899999999999999874 88999999998522     33455555 899999999999998664   4589999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccc--CCccceeEEe
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEA--GNVPQQAYNV  106 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~--~~~~~~~~~l  106 (161)
                      .+.++++++||++.++|+++...  ......||.|
T Consensus        93 ~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          93 SRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             CCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            99988999999999999998664  3456789987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.84  E-value=2.2e-19  Score=117.88  Aligned_cols=117  Identities=18%  Similarity=0.387  Sum_probs=98.4

Q ss_pred             EEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCCCCCceeEEE
Q 046962           10 LVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTVSQDDFVGEA   86 (161)
Q Consensus        10 i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~~~d~~iG~~   86 (161)
                      |++|++|+.  ..+.+||||.+.+.....+|++.+ ++.+|.|+|+|.|.+...   ...|.|+||+++..+++++||++
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~-~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~   78 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLE-NELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSA   78 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeC-CCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEE
Confidence            688999988  568899999999988877777776 889999999999998653   46899999999988899999999


Q ss_pred             EEeCccccccCCccceeEEee-c-CCeeceEEEEEEEEEeCCCCCC
Q 046962           87 IIPLHSVFEAGNVPQQAYNVV-K-DKKFQGEVRVGLTFKPEGGHGH  130 (161)
Q Consensus        87 ~~~l~~l~~~~~~~~~~~~l~-~-~~~~~G~i~l~l~~~~~~~~~~  130 (161)
                      .+++.++..+.. ...|+.|. . .....|+|++++.|.|......
T Consensus        79 ~~~l~~l~~~~~-~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~  123 (127)
T cd08373          79 TVSLQDLVSEGL-LEVTEPLLDSNGRPTGATISLEVSYQPPDGAVG  123 (127)
T ss_pred             EEEhhHcccCCc-eEEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence            999999987543 45788886 2 2334699999999999887654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.84  E-value=4.6e-20  Score=123.63  Aligned_cols=100  Identities=23%  Similarity=0.347  Sum_probs=82.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeC----------------C
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISE----------------G   63 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~----------------~   63 (161)
                      +|.|+|++|++|+.  ..+.+||||.+.+..     ...+|++.. ++.||+|||+|.|.+..                .
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~   77 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE   77 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEe-CCCCCccceEEEEEEecccccccccccCCccccc
Confidence            58999999999988  458899999999975     334566665 89999999999999851                1


Q ss_pred             CCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        64 ~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      ...|.|.||+.+..++++|||++.+++.++.........||.|.
T Consensus        78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~  121 (148)
T cd04010          78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQ  121 (148)
T ss_pred             EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecC
Confidence            24789999999988899999999999999987623346899996

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.84  E-value=3.6e-20  Score=120.74  Aligned_cols=103  Identities=19%  Similarity=0.261  Sum_probs=86.6

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC------eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT------QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~   73 (161)
                      .++|.|+|++|+||+..+..+.+||||++++..      ...+|++.+ ++.||+|||+|.|++...   ...|.|+||+
T Consensus        13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~-~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~   91 (124)
T cd08680          13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALE-DQDKPVFNEVFRVPISSTKLYQKTLQVDVCS   91 (124)
T ss_pred             CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccC-CCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence            478999999999999988778899999999852      234455554 899999999999998764   4589999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      .+..+++++||.+.++|+++.........||.|
T Consensus        92 ~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          92 VGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            999889999999999999996655555789875

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.84  E-value=1.2e-19  Score=118.59  Aligned_cols=103  Identities=56%  Similarity=0.955  Sum_probs=90.5

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEecCCCCC
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDSDTVSQ   79 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~~~~~~   79 (161)
                      |+|.|+|++|++|+..+..+.+||||.+.+.....+|++...++.+|.|+++|.|.+...    ...|.|+|||.+..++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            689999999999999888889999999999888777877764589999999999999876    4689999999998889


Q ss_pred             CceeEEEEEeCccccccCCccceeEEee
Q 046962           80 DDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        80 d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      +++||++.+++.++...+. ...|+.|.
T Consensus        81 d~~iG~~~i~l~~l~~~~~-~~~~~~l~  107 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGV-EPGTAELV  107 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCC-CcCceEee
Confidence            9999999999999987644 46888885

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.84  E-value=3.3e-19  Score=116.86  Aligned_cols=115  Identities=19%  Similarity=0.308  Sum_probs=95.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe---eeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCC
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ---EKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQD   80 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~---~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d   80 (161)
                      .|+|+|++|++|+..+..+.+||||.+.+...   ..+|..+. ++.+|.|+|+|.|.+... ...|.|+||+++..+++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~-~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~   80 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY-DTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH   80 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEec-CCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence            68999999999999998889999999987643   34556655 889999999999999875 46899999999988899


Q ss_pred             ceeEEEEEeCcccccc--CCccceeEEeecCCeeceEEEEEEEEEe
Q 046962           81 DFVGEAIIPLHSVFEA--GNVPQQAYNVVKDKKFQGEVRVGLTFKP  124 (161)
Q Consensus        81 ~~iG~~~~~l~~l~~~--~~~~~~~~~l~~~~~~~G~i~l~l~~~~  124 (161)
                      ++||++.++|.++...  +.....|+.|    ...|+|++.+.+.-
T Consensus        81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l----~~~g~i~l~~~~~~  122 (126)
T cd04043          81 DLCGRASLKLDPKRFGDDGLPREIWLDL----DTQGRLLLRVSMEG  122 (126)
T ss_pred             ceEEEEEEecCHHHcCCCCCCceEEEEc----CCCCeEEEEEEEee
Confidence            9999999999886543  3344679988    34799999988763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.84  E-value=1.5e-19  Score=116.92  Aligned_cols=99  Identities=22%  Similarity=0.380  Sum_probs=84.2

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCce
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDF   82 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~   82 (161)
                      ++.|.|+|++|++|+..+   ..||||.|.+++.+.+|...+ + .||.|||.|.|.+......|.|+|||++.+ .|++
T Consensus         1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~-~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~   74 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVR-G-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTL   74 (127)
T ss_pred             CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECC-C-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCc
Confidence            468999999999997765   458999999998777777775 4 599999999999987766799999999866 8999


Q ss_pred             eEEEEEeCccccccC-CccceeEEee
Q 046962           83 VGEAIIPLHSVFEAG-NVPQQAYNVV  107 (161)
Q Consensus        83 iG~~~~~l~~l~~~~-~~~~~~~~l~  107 (161)
                      ||++.++|+++..+. .....||.|.
T Consensus        75 lG~v~i~L~~v~~~~~~~~~~Wy~L~  100 (127)
T cd08394          75 VGTVWIPLSTIRQSNEEGPGEWLTLD  100 (127)
T ss_pred             eEEEEEEhHHcccCCCCCCCccEecC
Confidence            999999999987643 3347899997

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.83  E-value=1.1e-19  Score=118.83  Aligned_cols=103  Identities=27%  Similarity=0.437  Sum_probs=87.2

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDT   76 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~   76 (161)
                      .+.|.|+|++|++|+..+..+.+||||.+.+.   ....+|++.+ ++.+|.|+|+|.|.+...   ...|.|+||+++.
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~   93 (124)
T cd08387          15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHK-KTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ   93 (124)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEc-CCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence            57899999999999999988899999999984   2234555555 899999999999997654   3589999999999


Q ss_pred             CCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      ++++++||++.++++++.... ....||.|+
T Consensus        94 ~~~~~~iG~~~i~l~~~~~~~-~~~~W~~l~  123 (124)
T cd08387          94 FSRDECIGVVELPLAEVDLSE-KLDLWRKIQ  123 (124)
T ss_pred             CCCCceeEEEEEecccccCCC-CcceEEECc
Confidence            989999999999999998754 446899874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.83  E-value=1.3e-19  Score=115.53  Aligned_cols=94  Identities=21%  Similarity=0.398  Sum_probs=81.3

Q ss_pred             eEEEEEEEeecCCCCCCCC----CCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCC--CeEEEEEEecCCC
Q 046962            4 GTLEVLLVCAKGLQDTDFL----SNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGT--TALKLKIMDSDTV   77 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~----~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~--~~l~i~v~~~~~~   77 (161)
                      |.|.|+|++|++|+..+..    +.+||||.+.++....+|++++ ++.||+|+|.|.|.+....  ..|.|+|||++.+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~-~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~   79 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRR-HTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF   79 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeec-CCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence            6899999999999987643    3489999999988777777776 8999999999999986542  4789999999999


Q ss_pred             CCCceeEEEEEeCccccccCC
Q 046962           78 SQDDFVGEAIIPLHSVFEAGN   98 (161)
Q Consensus        78 ~~d~~iG~~~~~l~~l~~~~~   98 (161)
                      ++|++||++.++|.+|..+..
T Consensus        80 ~~dd~IG~~~l~L~~l~~~~~  100 (108)
T cd04039          80 SFNDYVATGSLSVQELLNAAP  100 (108)
T ss_pred             CCCcceEEEEEEHHHHHhhCC
Confidence            999999999999999987543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.83  E-value=2e-19  Score=117.64  Aligned_cols=104  Identities=24%  Similarity=0.365  Sum_probs=85.6

Q ss_pred             CCeEEEEEEEeecCCCCCCC-CCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEE
Q 046962            2 PKGTLEVLLVCAKGLQDTDF-LSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIM   72 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~-~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~   72 (161)
                      ..++|.|+|++|++|+..+. .+.+||||++++..     ...+|++.+ ++.||.|||+|.|.+...   ...|.|+||
T Consensus        13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR-NTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeee-CCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            45789999999999998875 47899999999852     123455554 899999999999998653   357999999


Q ss_pred             ecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           73 DSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        73 ~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      |++..+++++||++.+++.++..... ...||.|.
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~-~~~w~~l~  125 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDSQ-HEECLPLH  125 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccCC-cccEEECc
Confidence            99999999999999999999987643 46899873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.83  E-value=1.4e-19  Score=116.10  Aligned_cols=99  Identities=25%  Similarity=0.395  Sum_probs=83.6

Q ss_pred             eEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEecC
Q 046962            4 GTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDSD   75 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~~   75 (161)
                      |+|.|+|++|++|+..+.. +.+||||++.+..   ...+|++++ +++||.|+|+|.|.+...    ...|.|+|||++
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIR-KDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeEC-CCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence            7899999999999999987 8999999999853   234566665 899999999999987654    358999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      ..++|++||++.+++.+|...    ..|+.+.
T Consensus        80 ~~~~dd~lG~~~i~l~~l~~~----~~~~~~~  107 (111)
T cd04041          80 RFTADDRLGRVEIDLKELIED----RNWMGRR  107 (111)
T ss_pred             CCCCCCcceEEEEEHHHHhcC----CCCCccc
Confidence            998999999999999999853    3577664

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.82  E-value=2.1e-19  Score=114.17  Aligned_cols=99  Identities=24%  Similarity=0.408  Sum_probs=85.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCcee
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFV   83 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~i   83 (161)
                      .|.|+|++|++|+..+..+.+||||.+.+++...+|++.. ++.+|.|+|+|.|.+... ...|.|+||+++.   +++|
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~i   76 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKE-RTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSL   76 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCcccc-CCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCcc
Confidence            3789999999999998888999999999998777777766 899999999999999875 4589999999885   7899


Q ss_pred             EEEEEeCccccccC-CccceeEEee
Q 046962           84 GEAIIPLHSVFEAG-NVPQQAYNVV  107 (161)
Q Consensus        84 G~~~~~l~~l~~~~-~~~~~~~~l~  107 (161)
                      |++.++|.++.... .....||.|.
T Consensus        77 G~~~i~l~~l~~~~~~~~~~w~~L~  101 (105)
T cd04050          77 GSLTLPLSELLKEPDLTLDQPFPLD  101 (105)
T ss_pred             EEEEEEHHHhhccccceeeeeEecC
Confidence            99999999998753 3356899984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.82  E-value=2.1e-19  Score=115.11  Aligned_cols=101  Identities=24%  Similarity=0.407  Sum_probs=87.0

Q ss_pred             EEEEEEeecCCCCCCC-CCCCCcEEEEEEcCeeeEEEEeeCCCCCCee-ccEEEEEEeCC---CCeEEEEEEecCCCCCC
Q 046962            6 LEVLLVCAKGLQDTDF-LSNMDPYVVLSCRTQEKRSSVASGQGTTPNW-NENFVFTISEG---TTALKLKIMDSDTVSQD   80 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~-~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w-~e~~~~~~~~~---~~~l~i~v~~~~~~~~d   80 (161)
                      |.|+|++|++|+..+. .+.+||||.+.++....+|++++ +++||.| +|+|.|.+...   ...|.|+|||++..+++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~   79 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVK-KSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN   79 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceec-CCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence            5799999999998874 57899999999998777777776 8999999 99999998764   35899999999998899


Q ss_pred             ceeEEEEEeCcccccc--CCccceeEEee
Q 046962           81 DFVGEAIIPLHSVFEA--GNVPQQAYNVV  107 (161)
Q Consensus        81 ~~iG~~~~~l~~l~~~--~~~~~~~~~l~  107 (161)
                      ++||++.+++.++...  ......||.|.
T Consensus        80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          80 DAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            9999999999999883  23356899884

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.82  E-value=4.7e-19  Score=115.80  Aligned_cols=102  Identities=25%  Similarity=0.398  Sum_probs=86.1

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDT   76 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~   76 (161)
                      .++|.|+|++|++|+..+..+.+||||++.+..   ...+|++.+ ++.||.|+|+|.|.+...   ...|.|+|||++.
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~   93 (124)
T cd08385          15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR   93 (124)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCc-CCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence            578999999999999998888999999999853   233555555 899999999999998653   3589999999999


Q ss_pred             CCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      ++++++||++.++++++..+ .....|+.|
T Consensus        94 ~~~~~~lG~~~i~l~~~~~~-~~~~~W~~l  122 (124)
T cd08385          94 FSKHDLIGEVRVPLLTVDLG-HVTEEWRDL  122 (124)
T ss_pred             CCCCceeEEEEEecCcccCC-CCcceEEEc
Confidence            88999999999999998764 445689987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>PLN03008 Phospholipase D delta

Probab=99.82  E-value=8.3e-19  Score=141.61  Aligned_cols=149  Identities=23%  Similarity=0.382  Sum_probs=121.7

Q ss_pred             eEEEEEEEeecCCCCCCC------------------------------------------CCCCCcEEEEEEcCeee-EE
Q 046962            4 GTLEVLLVCAKGLQDTDF------------------------------------------LSNMDPYVVLSCRTQEK-RS   40 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~------------------------------------------~~~~dp~v~i~~~~~~~-~t   40 (161)
                      |+|.++|.+|++|+.++.                                          .+.+||||.|.++..+. +|
T Consensus        14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT   93 (868)
T PLN03008         14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART   93 (868)
T ss_pred             cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence            789999999999885221                                          23579999999987655 55


Q ss_pred             EEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEeecC----CeeceEE
Q 046962           41 SVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKD----KKFQGEV  116 (161)
Q Consensus        41 ~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~----~~~~G~i  116 (161)
                      +++. ++.||+|||+|.|.+......|.|+|||++.++ +++||++.+|+.++..+.. ...|+.|...    .+..|+|
T Consensus        94 rVi~-n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~-vd~Wl~Ll~~~~kp~k~~~kl  170 (868)
T PLN03008         94 RVLK-NSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGER-ISGWFPVLGASGKPPKAETAI  170 (868)
T ss_pred             EeCC-CCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCc-eEEEEEccccCCCCCCCCcEE
Confidence            5554 899999999999999887789999999999996 5899999999999988644 4689999832    2455899


Q ss_pred             EEEEEEEeCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 046962          117 RVGLTFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGG  155 (161)
Q Consensus       117 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  155 (161)
                      +|++.|.|-........|-..+....|+...+..+.-|+
T Consensus       171 ~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~  209 (868)
T PLN03008        171 FIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGS  209 (868)
T ss_pred             EEEEEEEEccccccccccccCCcCCCCCCCccccCCCCC
Confidence            999999999999888888666657788888887776654

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.82  E-value=4.6e-19  Score=119.01  Aligned_cols=102  Identities=28%  Similarity=0.409  Sum_probs=87.0

Q ss_pred             EEEEEEEeecCCCCCCCCC--------------CCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC--CCeEE
Q 046962            5 TLEVLLVCAKGLQDTDFLS--------------NMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG--TTALK   68 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~--------------~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~l~   68 (161)
                      +|.|+|++|++|+..+..+              .+||||+|.+.....+|++++ ++.||+|||+|.|.+..+  ...|.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~-~t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKK-NSYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEc-CCCCCCcceEEEEEeeCCCcCCEEE
Confidence            4789999999999988543              689999999998888887777 899999999999997543  46899


Q ss_pred             EEEEecCCCCCCceeEEEEEeCccccccCC------ccceeEEee
Q 046962           69 LKIMDSDTVSQDDFVGEAIIPLHSVFEAGN------VPQQAYNVV  107 (161)
Q Consensus        69 i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~------~~~~~~~l~  107 (161)
                      |+|||++..++|++||++.+++.++...+.      ..+.|+.|.
T Consensus        80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly  124 (151)
T cd04018          80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY  124 (151)
T ss_pred             EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence            999999999899999999999999877543      246888885

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.82  E-value=4.6e-19  Score=115.93  Aligned_cols=101  Identities=24%  Similarity=0.414  Sum_probs=83.6

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeC----CCCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISE----GTTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~l~i~v~~   73 (161)
                      .++|.|+|++|++|+..+..+.+||||.+.+..     ...+|++++ ++.||.|+|+|.|.+..    ....|.|+|||
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d   93 (125)
T cd04031          15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK-KTLNPEWNQTFEYSNVRRETLKERTLEVTVWD   93 (125)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccC-CCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence            578999999999999998888999999999864     234556555 89999999999998644    24589999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      ++..+++++||++.++|.+.....  ...||.|
T Consensus        94 ~~~~~~~~~iG~~~i~l~~~~~~~--~~~W~~L  124 (125)
T cd04031          94 YDRDGENDFLGEVVIDLADALLDD--EPHWYPL  124 (125)
T ss_pred             CCCCCCCcEeeEEEEecccccccC--CcceEEC
Confidence            999889999999999999843332  3589987

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.81  E-value=3.4e-19  Score=115.56  Aligned_cols=101  Identities=20%  Similarity=0.351  Sum_probs=82.3

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC--CCeEEEEEEecC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG--TTALKLKIMDSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~l~i~v~~~~   75 (161)
                      .++|.|+|++|++|+..+ .+.+||||++++...     ..+|++.. ++.||.|||+|.|.+...  ...|.|+||+.+
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~-~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVP-DSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCcccc-CCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            478999999999999988 788999999998632     23455554 899999999999998654  246889999998


Q ss_pred             CCC-CCceeEEEEEeCccccccCCccceeEEe
Q 046962           76 TVS-QDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        76 ~~~-~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      ... ++++||++.+++.++..+ .....||.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~-~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQ-KEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccC-ccccceEeC
Confidence            765 478999999999999854 434689975

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.81  E-value=9.2e-19  Score=114.84  Aligned_cols=102  Identities=23%  Similarity=0.340  Sum_probs=85.7

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~   74 (161)
                      .+.|+|+|++|++|+..+..+.+||||++.+..     ...+|++++ ++.||.|+|+|.|.+...   ...|.+.||+.
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~   93 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK-DNLNPVFDETFEFPVSLEELKRRTLDVAVKNS   93 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEeccccc-CCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence            478999999999999999888999999999853     344566665 899999999999998654   35899999999


Q ss_pred             CCC--CCCceeEEEEEeCccccccCCccceeEEe
Q 046962           75 DTV--SQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        75 ~~~--~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      +.+  +++++||++.+++.++..+. ....||.|
T Consensus        94 ~~~~~~~~~~iG~~~i~l~~l~~~~-~~~~W~~L  126 (127)
T cd04030          94 KSFLSREKKLLGQVLIDLSDLDLSK-GFTQWYDL  126 (127)
T ss_pred             CcccCCCCceEEEEEEecccccccC-CccceEEC
Confidence            875  68999999999999997653 34689987

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.80  E-value=1.5e-18  Score=115.95  Aligned_cols=93  Identities=38%  Similarity=0.615  Sum_probs=84.6

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCce
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDF   82 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~   82 (161)
                      .|.|.|+|++|++|+..+. +.+||||.+.++....+|+++. ++.||.|+|+|.|.+......|.|+|||++.++.|++
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk-~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~   78 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIK-KNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDS   78 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEc-CCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCE
Confidence            3899999999999998887 7899999999998888888877 8999999999999998877799999999999999999


Q ss_pred             eEEEEEeCccccccC
Q 046962           83 VGEAIIPLHSVFEAG   97 (161)
Q Consensus        83 iG~~~~~l~~l~~~~   97 (161)
                      ||++.+++.++....
T Consensus        79 iG~a~i~l~~l~~~~   93 (145)
T cd04038          79 MGEAEIDLEPLVEAA   93 (145)
T ss_pred             EEEEEEEHHHhhhhh
Confidence            999999999887643

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.80  E-value=6.3e-18  Score=110.62  Aligned_cols=113  Identities=27%  Similarity=0.459  Sum_probs=90.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-eeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-EKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV   83 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i   83 (161)
                      +|.|+|.+|+ |...+..+.+||||.+.+... ..+|++.. ++.+|.|++.|.|.+.. ...|.|+|||++..+.+++|
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~-~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i   79 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSK-KTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL   79 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeC-CCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence            6899999998 545555788999999999876 55566655 89999999999999864 47999999999998899999


Q ss_pred             EEEEEeCccccccCCcc----ceeEEeecCC----eeceEEEEEE
Q 046962           84 GEAIIPLHSVFEAGNVP----QQAYNVVKDK----KFQGEVRVGL  120 (161)
Q Consensus        84 G~~~~~l~~l~~~~~~~----~~~~~l~~~~----~~~G~i~l~l  120 (161)
                      |++.++|.++.......    ..|+.+....    ...|+|.+++
T Consensus        80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999999988743322    2367776333    6689998875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.80  E-value=2.7e-18  Score=112.31  Aligned_cols=104  Identities=26%  Similarity=0.397  Sum_probs=85.7

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEec
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDS   74 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~   74 (161)
                      +.++|.|+|++|++|+..+..+.+||||.+.+.   ....+|++.+ ++.+|.|+|+|.|.....    ...|.++|||+
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~   92 (125)
T cd08386          14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY   92 (125)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeec-CCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence            357899999999999999888899999999983   3344566655 899999999999975322    34799999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      +.++++++||++.+++.++... .....|+.|.
T Consensus        93 d~~~~~~~iG~~~i~l~~l~~~-~~~~~W~~l~  124 (125)
T cd08386          93 DRFSRNDPIGEVSLPLNKVDLT-EEQTFWKDLK  124 (125)
T ss_pred             CCCcCCcEeeEEEEecccccCC-CCcceEEecC
Confidence            9998999999999999999864 3456899873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.79  E-value=8.8e-18  Score=111.19  Aligned_cols=113  Identities=25%  Similarity=0.462  Sum_probs=89.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-------------eeeEEEEeeCCCCCCee-ccEEEEEEeCCCCeEEEE
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-------------QEKRSSVASGQGTTPNW-NENFVFTISEGTTALKLK   70 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-------------~~~~t~~~~~~~~~P~w-~e~~~~~~~~~~~~l~i~   70 (161)
                      .+.|.+++|++|+ .+.++.+|||+.+.+..             +..+|.++. +++||+| +|+|.|.+... ..|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~~-~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVE-NTINPVWHREQFVFVGLPT-DVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEc-CCCCCceEceEEEEEcCCC-CEEEEE
Confidence            4789999999998 67789999999999842             134555555 9999999 99999998654 789999


Q ss_pred             EEecCCCCC---CceeEEEEEeCccccccCCc--cceeEEee---cCCeeceEEEEEE
Q 046962           71 IMDSDTVSQ---DDFVGEAIIPLHSVFEAGNV--PQQAYNVV---KDKKFQGEVRVGL  120 (161)
Q Consensus        71 v~~~~~~~~---d~~iG~~~~~l~~l~~~~~~--~~~~~~l~---~~~~~~G~i~l~l  120 (161)
                      |||++..++   +++||++.+++.++......  ...||.|.   ......|+|.+.+
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            999765433   78999999999999876443  45688876   3455678888765

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.79  E-value=3.1e-18  Score=111.69  Aligned_cols=102  Identities=28%  Similarity=0.435  Sum_probs=84.4

Q ss_pred             CeEEEEEEEeecCCCCCC-CCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTD-FLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~-~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~   73 (161)
                      .+.|.|+|++|++|+..+ ..+.+||||++.+..     ...+|.+. +++.+|.|+|+|.|.+...   ...|.|+||+
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d   91 (123)
T cd08521          13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVK-KNTTNPVFNETLKYHISKSQLETRTLQLSVWH   91 (123)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeecccc-CCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence            578999999999999988 678899999998842     22345554 4899999999999997653   3589999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      ++..+++++||++.++|+++..+. ....||.|
T Consensus        92 ~~~~~~~~~iG~~~i~l~~l~~~~-~~~~w~~l  123 (123)
T cd08521          92 HDRFGRNTFLGEVEIPLDSWDLDS-QQSEWYPL  123 (123)
T ss_pred             CCCCcCCceeeEEEEecccccccC-CCccEEEC
Confidence            998889999999999999996543 34689976

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.79  E-value=3.2e-18  Score=112.43  Aligned_cols=103  Identities=24%  Similarity=0.367  Sum_probs=82.1

Q ss_pred             CeEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEE-EeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFT-ISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~-~~~~---~~~l~i~v~~~   74 (161)
                      .++|.|+|++|++|+..+.. +.+||||.+.+..   ...+|++++ ++.||.|+|+|.|. +...   ...|.++||++
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~-~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~   93 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLR-KTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF   93 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEc-CCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence            46899999999999998875 8899999998852   234566665 89999999999994 4322   34799999999


Q ss_pred             CCCCCCceeEEEEEeCccccccC-CccceeEEe
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAG-NVPQQAYNV  106 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~-~~~~~~~~l  106 (161)
                      +.++++++||++.++|+++...+ ..-..|..+
T Consensus        94 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~  126 (128)
T cd08388          94 DRYSRDDVIGEVVCPLAGADLLNEGELLVSREI  126 (128)
T ss_pred             CCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence            99999999999999999986642 223466665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.79  E-value=1.5e-17  Score=110.83  Aligned_cols=116  Identities=17%  Similarity=0.302  Sum_probs=93.1

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeee-EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCC----C
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTV----S   78 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~----~   78 (161)
                      ..|.|.|++|++|+.++     ++||.+.++.... +|++.. ++.+|.|+|+|.|........|.|.||..+..    .
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~-~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKL-KTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEc-CCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            46899999999998764     7999999999887 555555 88999999999998766667899999876522    2


Q ss_pred             CCceeEEEEEeCccccccCCccceeEEeec-CC----------eeceEEEEEEEEEeCC
Q 046962           79 QDDFVGEAIIPLHSVFEAGNVPQQAYNVVK-DK----------KFQGEVRVGLTFKPEG  126 (161)
Q Consensus        79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~-~~----------~~~G~i~l~l~~~~~~  126 (161)
                      ++.+||.+.++++++..+ .....||.|.. ..          ...++|+|++.|.+..
T Consensus        85 ~~~~IG~V~Ip~~~l~~~-~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~  142 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSR-QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR  142 (146)
T ss_pred             CCcEEEEEEEEHHHhcCC-CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence            678999999999999975 44579999982 11          3347999999998753

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.79  E-value=3.4e-18  Score=111.71  Aligned_cols=91  Identities=30%  Similarity=0.453  Sum_probs=78.8

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeC--CCCeEEEEEEecCCCCCC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE--GTTALKLKIMDSDTVSQD   80 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~l~i~v~~~~~~~~d   80 (161)
                      .|+|.|+|++|++|+. +..+.+|||++|.+.+...+|++++ ++.||+|+|+|.|....  ....|.|+|||++..++|
T Consensus        27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~-~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d  104 (127)
T cd04032          27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIW-NNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD  104 (127)
T ss_pred             cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceec-CCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence            5899999999999984 5668899999999988877787776 89999999999997432  356999999999999999


Q ss_pred             ceeEEEEEeCccccc
Q 046962           81 DFVGEAIIPLHSVFE   95 (161)
Q Consensus        81 ~~iG~~~~~l~~l~~   95 (161)
                      ++||++.++|.....
T Consensus       105 d~IG~~~i~l~~~~~  119 (127)
T cd04032         105 DLLGTCSVVPEAGVH  119 (127)
T ss_pred             CeeEEEEEEecCCce
Confidence            999999999986654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.79  E-value=5.8e-18  Score=109.18  Aligned_cols=109  Identities=23%  Similarity=0.365  Sum_probs=88.7

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcCee-eEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCcee
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE-KRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFV   83 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~i   83 (161)
                      |+|+|++|++|+..+..+.+||||.+.+.... .+|+.+. ++.+|.|+++|.|.+... ...+.|+||+++..+++++|
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~-~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIK-KTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL   79 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceec-CCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence            57999999999999888889999999997544 4555654 899999999999998764 46899999999988899999


Q ss_pred             EEEEEeCccccccCCccceeEEee-cCCeeceEE
Q 046962           84 GEAIIPLHSVFEAGNVPQQAYNVV-KDKKFQGEV  116 (161)
Q Consensus        84 G~~~~~l~~l~~~~~~~~~~~~l~-~~~~~~G~i  116 (161)
                      |++.+++.++..+.. ...|+.|. ..+...|.|
T Consensus        80 G~~~~~l~~l~~~~~-~~~~~~L~~~g~~~~~~~  112 (115)
T cd04040          80 GSAYIDLSDLEPEET-TELTLPLDGQGGGKLGAV  112 (115)
T ss_pred             EEEEEEHHHcCCCCc-EEEEEECcCCCCccCceE
Confidence            999999999887533 46788886 344444544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.78  E-value=4e-18  Score=116.12  Aligned_cols=104  Identities=23%  Similarity=0.353  Sum_probs=85.0

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEE
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIM   72 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~   72 (161)
                      +.|+|.|+|++|++|+..+..+.+||||.+.+.     ....+|++++ ++.||.|+|.|.|.+...    ...|.|+||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~-~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVK-KSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccC-CCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            568999999999999999988899999999884     2334566665 899999999999985432    247999999


Q ss_pred             ecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           73 DSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        73 ~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      |++.++++++||++.+++.++...+. ...|+.+.
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~-~~~w~~~~  137 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQ-AVDWMDST  137 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCC-ccccccCC
Confidence            99999889999999999999876433 35677663

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.78  E-value=1.7e-17  Score=111.56  Aligned_cols=123  Identities=17%  Similarity=0.291  Sum_probs=92.0

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEc----C-eeeEEEEeeCCCCCCeeccEEEEEEeCC---------CCeEEE
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR----T-QEKRSSVASGQGTTPNWNENFVFTISEG---------TTALKL   69 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~----~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~---------~~~l~i   69 (161)
                      +.|+|....+.+|+..+..+.+||||++++.    . ...+|++++ +++||+|||+|.|.+...         ...|.+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~   82 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF   82 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCccc-CCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence            3444444444447777777889999999972    2 234565665 999999999999998654         247999


Q ss_pred             EEEecCCC-CCCceeEEEEEeCccccccCCccceeEEeec-CCeeceEEEEEEEEEeCCCC
Q 046962           70 KIMDSDTV-SQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK-DKKFQGEVRVGLTFKPEGGH  128 (161)
Q Consensus        70 ~v~~~~~~-~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~-~~~~~G~i~l~l~~~~~~~~  128 (161)
                      +|||.+.+ .+|++||++.++|+.+...... ..|+.|.. ....-|.|++++..-.+...
T Consensus        83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~-~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~  142 (155)
T cd08690          83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEI-HESVDLMDGRKATGGKLEVKVRLREPLTG  142 (155)
T ss_pred             EEEeCCCcccCCCeeEEEEEEcccccccCcc-eEEEEhhhCCCCcCCEEEEEEEecCCCcc
Confidence            99999976 5799999999999999876543 36888874 34456799999997644443

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.78  E-value=6.9e-18  Score=110.08  Aligned_cols=102  Identities=25%  Similarity=0.387  Sum_probs=84.9

Q ss_pred             CeEEEEEEEeecCCCCCC-CCCCCCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecC
Q 046962            3 KGTLEVLLVCAKGLQDTD-FLSNMDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~-~~~~~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~   75 (161)
                      .+.|.|+|++|++|+..+ ..+.+||||.+++.   ....+|++. +++.+|.|+|.|.|.+...   ...|.|+||+.+
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~-~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~   91 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVK-RKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD   91 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeE-cCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence            578999999999999998 57889999999984   223345555 4999999999999998654   357999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      ..+++++||++.++|.++..... ...|+.|
T Consensus        92 ~~~~~~~iG~~~i~L~~l~~~~~-~~~w~~L  121 (123)
T cd08390          92 RFSRHCIIGHVLFPLKDLDLVKG-GVVWRDL  121 (123)
T ss_pred             cCCCCcEEEEEEEeccceecCCC-ceEEEeC
Confidence            88889999999999999988654 3589887

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.78  E-value=4.6e-18  Score=109.09  Aligned_cols=99  Identities=22%  Similarity=0.420  Sum_probs=82.7

Q ss_pred             CCCCCcEEEEEEcCeee-EEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCceeEEEEEeCccccccCCc
Q 046962           22 LSNMDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNV   99 (161)
Q Consensus        22 ~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~   99 (161)
                      +|.+||||.+.+++... +|++.. ++.||.|++.|.|.+... ...|.|.||+++.. ++++||.+.++|+++......
T Consensus        10 ~G~~dPYv~v~v~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052          10 TGLLSPYAELYLNGKLVYTTRVKK-KTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             CCCCCceEEEEECCEEEEEEeeec-cCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence            57899999999987654 555544 899999999999998765 45799999999988 899999999999999765444


Q ss_pred             cceeEEeecCCeeceEEEEEEEEEe
Q 046962          100 PQQAYNVVKDKKFQGEVRVGLTFKP  124 (161)
Q Consensus       100 ~~~~~~l~~~~~~~G~i~l~l~~~~  124 (161)
                      ...||.|..  ...|+|++++.|.|
T Consensus        88 ~~~w~~L~~--~~~G~i~~~~~~~p  110 (111)
T cd04052          88 GQQWFPLSG--NGQGRIRISALWKP  110 (111)
T ss_pred             cceeEECCC--CCCCEEEEEEEEec
Confidence            568999853  46899999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.78  E-value=5.4e-18  Score=114.03  Aligned_cols=99  Identities=33%  Similarity=0.499  Sum_probs=82.5

Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----------------------------eeEEEEeeCCCCCCe
Q 046962            1 MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----------------------------EKRSSVASGQGTTPN   51 (161)
Q Consensus         1 ~~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----------------------------~~~t~~~~~~~~~P~   51 (161)
                      +|.+.|.|+|++|++|+..+..+.+||||.+.+...                             ..+|.+.. ++++|.
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~  103 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-QTLNPV  103 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-CCCCCc
Confidence            467899999999999999998899999999998531                             13444554 899999


Q ss_pred             eccEEEEEEeCC-CCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           52 WNENFVFTISEG-TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        52 w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      |+++|.|.+... ...|.|+|||++    +++||++.++++++... . ...||.|
T Consensus       104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-~-~d~W~~L  153 (153)
T cd08676         104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-G-LDSWFKL  153 (153)
T ss_pred             cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-C-CCCeEeC
Confidence            999999998764 468999999987    78999999999999843 2 4689976

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.78  E-value=1.1e-17  Score=107.39  Aligned_cols=99  Identities=23%  Similarity=0.374  Sum_probs=83.4

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-----CCeEEEEEEecCCCC
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-----TTALKLKIMDSDTVS   78 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-----~~~l~i~v~~~~~~~   78 (161)
                      -.|+|+|++|++|+    .+.+||||.+.++++..+|+... ++.+|.|+|+|.|.+...     ...|.|+|||.+.++
T Consensus         4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~   78 (111)
T cd04011           4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR   78 (111)
T ss_pred             EEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence            36899999999998    46899999999998877777766 889999999999997543     257999999999888


Q ss_pred             CCceeEEEEEeCccccccCC--ccceeEEee
Q 046962           79 QDDFVGEAIIPLHSVFEAGN--VPQQAYNVV  107 (161)
Q Consensus        79 ~d~~iG~~~~~l~~l~~~~~--~~~~~~~l~  107 (161)
                      ++++||++.++|+++..+..  ....|+.|.
T Consensus        79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~  109 (111)
T cd04011          79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT  109 (111)
T ss_pred             cCCccEEEEECCccccCCCCCcceEEEEEee
Confidence            89999999999999976533  346788874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.78  E-value=5.8e-18  Score=110.62  Aligned_cols=102  Identities=19%  Similarity=0.309  Sum_probs=83.3

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEE-EeCC---CCeEEEEEEecC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFT-ISEG---TTALKLKIMDSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~-~~~~---~~~l~i~v~~~~   75 (161)
                      .++|.|+|++|++|+..+..+.+||||.+.+..   ...+|++.+ + .||+|||+|.|+ +...   ...|.++||+++
T Consensus        15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~   92 (124)
T cd08389          15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE   92 (124)
T ss_pred             CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence            468999999999999999888899999987732   233444543 5 999999999998 5543   458999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .++++++||++.++|+++... .....||.|.
T Consensus        93 ~~~~~~~lG~~~i~L~~l~~~-~~~~~w~~L~  123 (124)
T cd08389          93 RMRKERLIGEKVVPLSQLNLE-GETTVWLTLE  123 (124)
T ss_pred             CcccCceEEEEEEeccccCCC-CCceEEEeCC
Confidence            998999999999999999765 4456899873

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.77  E-value=1.4e-17  Score=107.64  Aligned_cols=109  Identities=23%  Similarity=0.376  Sum_probs=83.0

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcCee-eEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCCCCCc
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE-KRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~~~d~   81 (161)
                      |.|+|++|++|+..   +.+||||.+.+.... .+|+... + .+|.|+|+|.|.+...   ...|.+.+|+.+....+.
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~-~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~   76 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVE-K-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI   76 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEE-C-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence            78999999999876   689999999998754 4566665 6 9999999999998774   246788889888665666


Q ss_pred             eeEEEEEeCccccccCCccceeEEeec---CCeeceEEEEEEEE
Q 046962           82 FVGEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLTF  122 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~  122 (161)
                      ++|.+.+  ..+..+ .....||.|..   .....|+|+|.+.|
T Consensus        77 ~~g~v~l--~~~~~~-~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          77 VIGKVAL--SKLDLG-QGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEEe--cCcCCC-CcceeEEECccCCCCCCcCceEEEEEEC
Confidence            6666554  444433 33468999972   24568999999876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.5e-17  Score=128.42  Aligned_cols=124  Identities=27%  Similarity=0.407  Sum_probs=101.7

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCee---eEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE---KRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDT   76 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~---~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~   76 (161)
                      ...|+|+|++|++|+..+..+.+||||++++...+   .+|++.+ +++||.|+|+|.|.+...   ...|.++||+.+.
T Consensus       166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHR-KTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeee-cCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            46799999999999999966789999999996433   3455555 999999999999996655   4589999999999


Q ss_pred             CCCCceeEEEEEeCccccccCCccceeEEeec----CCeeceEEEEEEEEEeCCCC
Q 046962           77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK----DKKFQGEVRVGLTFKPEGGH  128 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~~~~~~  128 (161)
                      ++++++||++.++|..+..... ...|..+..    .....|+|.++++|.|.+++
T Consensus       245 fsr~~~iGev~~~l~~~~~~~~-~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~  299 (421)
T KOG1028|consen  245 FSRHDFIGEVILPLGEVDLLST-TLFWKDLQPSSTDSEELAGELLLSLCYLPTAGR  299 (421)
T ss_pred             cccccEEEEEEecCcccccccc-ceeeeccccccCCcccccceEEEEEEeecCCCe
Confidence            9999999999999888877543 457888872    22233899999999999765

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.76  E-value=1.3e-17  Score=108.96  Aligned_cols=117  Identities=23%  Similarity=0.377  Sum_probs=90.1

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcCee--eEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCce
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE--KRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDF   82 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~--~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~   82 (161)
                      |+|.|++|++|+..+..+.+||||.+.++...  .+|+.++ ++.+|.|+|+|.|.+..+ ...|.|+|||++.++++++
T Consensus         2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~-~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEE-CCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            78999999999999988999999999998765  3566666 799999999999997654 4589999999999989999


Q ss_pred             eEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEEeC
Q 046962           83 VGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPE  125 (161)
Q Consensus        83 iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~~~  125 (161)
                      ||++.+++++......  -.+..+..+....|.++..-.+.|.
T Consensus        81 iG~~~i~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  121 (124)
T cd04037          81 IGETVIDLEDRFFSKH--RATCGLPPTYEESGPNQWRDSLKPS  121 (124)
T ss_pred             eEEEEEeecccccchH--HHhccCCCcccccCceecCcccCcc
Confidence            9999999998765211  1122222333356666666655543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.76  E-value=1e-17  Score=110.76  Aligned_cols=93  Identities=25%  Similarity=0.423  Sum_probs=79.4

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-------eeeEEEEeeCCCCCCeeccEEEEEEeCC-----CCeEEEE
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-------QEKRSSVASGQGTTPNWNENFVFTISEG-----TTALKLK   70 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-------~~~~t~~~~~~~~~P~w~e~~~~~~~~~-----~~~l~i~   70 (161)
                      .+.|+|+|++|++|+..+..+.+||||.+.+..       ...+|++++ ++.||+|+|+|.|.+...     ...|.|+
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKK-KTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCc-CCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            368999999999999998888999999999852       234556665 999999999999998652     3489999


Q ss_pred             EEecCCCCCCceeEEEEEeCcccccc
Q 046962           71 IMDSDTVSQDDFVGEAIIPLHSVFEA   96 (161)
Q Consensus        71 v~~~~~~~~d~~iG~~~~~l~~l~~~   96 (161)
                      |||++.++++++||++.++|.++..-
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCCcc
Confidence            99999998899999999999998853

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.76  E-value=1.4e-17  Score=110.57  Aligned_cols=99  Identities=29%  Similarity=0.507  Sum_probs=84.4

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEc----CeeeEEEEeeCCCCCCeeccEEEEEEeCC----------------CC
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCR----TQEKRSSVASGQGTTPNWNENFVFTISEG----------------TT   65 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----------------~~   65 (161)
                      |.|+|++|++|+.. ..+.+|||+.+.+.    ....+|..+. ++.+|.|+++|.|.+...                ..
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~-~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~   78 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKK-KTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS   78 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceee-CCCCCCcceEEEEEcccccccccccccccccccccc
Confidence            57999999999988 77899999999998    4556666666 899999999999997664                34


Q ss_pred             eEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           66 ALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        66 ~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .|.|+|||++..+++++||++.+++.++.... ....||.|.
T Consensus        79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-~~~~W~~L~  119 (137)
T cd08675          79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAG-SHQAWYFLQ  119 (137)
T ss_pred             EEEEEEEcCCcCcCCcEEEEEEEehhhccCCC-cccceEecC
Confidence            89999999998889999999999999988653 346899986

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.76  E-value=1.6e-17  Score=109.49  Aligned_cols=101  Identities=24%  Similarity=0.403  Sum_probs=86.3

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC--CCeEEEEEEecCC
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG--TTALKLKIMDSDT   76 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~l~i~v~~~~~   76 (161)
                      +.|.|+|++|++|+..+..+.+||||.+.+..     ...+|+++. ++.+|.|+++|.|.+...  ...|.|+||+.+.
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~   91 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIK-KTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR   91 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeec-CCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence            68999999999999988888899999999863     345566665 899999999999998764  3589999999998


Q ss_pred             CCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .+++++||++.+++.++...  ....||.|.
T Consensus        92 ~~~~~~iG~~~~~l~~l~~~--~~~~w~~L~  120 (131)
T cd04026          92 TTRNDFMGSLSFGVSELIKM--PVDGWYKLL  120 (131)
T ss_pred             CCCcceeEEEEEeHHHhCcC--ccCceEECc
Confidence            88999999999999999865  346899985

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.76  E-value=6.6e-18  Score=111.66  Aligned_cols=101  Identities=20%  Similarity=0.392  Sum_probs=83.0

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~   74 (161)
                      .+.|.|+|++|++|+..+..+.+||||.+.+..     ...+|++.+ ++.+|.|+|+|.|.+...   ...|.|+|||+
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~   90 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK   90 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEe-ccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence            589999999999999999888999999999853     233556665 999999999999998654   35899999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      +..+++++||++.++++..   +.....|+.+.
T Consensus        91 d~~~~~~~lG~~~i~l~~~---~~~~~~W~~~l  120 (133)
T cd08384          91 DIGKSNDYIGGLQLGINAK---GERLRHWLDCL  120 (133)
T ss_pred             CCCCCccEEEEEEEecCCC---CchHHHHHHHH
Confidence            9888999999999999752   22345788764

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.75  E-value=2.2e-17  Score=109.57  Aligned_cols=102  Identities=22%  Similarity=0.406  Sum_probs=80.9

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEe
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMD   73 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~   73 (161)
                      +.|+|.|+|++|++|+..+..+.+||||.+.+..     ...+|++.+ ++.||.|+|+|.|.+....   ..|.|+|||
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d   91 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-RTLNPYYNESFSFEVPFEQIQKVHLIVTVLD   91 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeecccee-CCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence            3589999999999999998889999999999852     123455544 9999999999999986542   379999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      ++.++++++||++.+++...-   .....|+.+.
T Consensus        92 ~~~~~~~~~iG~~~i~~~~~~---~~~~~W~~~~  122 (136)
T cd08402          92 YDRIGKNDPIGKVVLGCNATG---AELRHWSDML  122 (136)
T ss_pred             CCCCCCCceeEEEEECCccCC---hHHHHHHHHH
Confidence            999999999999999987632   2224565543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.75  E-value=1.8e-16  Score=104.03  Aligned_cols=114  Identities=25%  Similarity=0.424  Sum_probs=90.3

Q ss_pred             eEEEEEEEeecCCCCCC--CCCCCCcEEEEEEc------CeeeEEEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEec
Q 046962            4 GTLEVLLVCAKGLQDTD--FLSNMDPYVVLSCR------TQEKRSSVASGQGTTPNWNENFVFTISEGT-TALKLKIMDS   74 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~--~~~~~dp~v~i~~~------~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~~   74 (161)
                      -+|+|+|++|++|+..+  ..+.+||||.+++.      ....+|+.....+.+|.|+|+|.|.+.... ..|.|+||++
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            47999999999999887  46789999999984      334566666534459999999999987654 4689999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee-cCC--eeceEEEEEEEE
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDK--KFQGEVRVGLTF  122 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~--~~~G~i~l~l~~  122 (161)
                      +.. ++++||++.+++.+|..+    ..|+.|. ..+  ...|.|.+.+.+
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~g----~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQG----YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcCc----eEEEEecCCCCCCCcceeEEEEEEE
Confidence            988 899999999999999543    3577776 222  456889888875

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.74  E-value=1.5e-17  Score=110.42  Aligned_cols=101  Identities=24%  Similarity=0.399  Sum_probs=81.6

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~   74 (161)
                      .++|.|+|++|++|+..+..+.+||||.+.+...     ..+|++.+ ++.||.|+|+|.|.+...   ...|.|+|||+
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~   92 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK-CTLNPVFNESFVFDIPSEELEDISVEFLVLDS   92 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc-CCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence            5789999999999999998899999999998432     22344454 899999999999998653   34789999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      +..+++++||++.+++.. . + .....|+.+.
T Consensus        93 d~~~~~~~iG~~~~~~~~-~-~-~~~~~w~~l~  122 (136)
T cd08404          93 DRVTKNEVIGRLVLGPKA-S-G-SGGHHWKEVC  122 (136)
T ss_pred             CCCCCCccEEEEEECCcC-C-C-chHHHHHHHH
Confidence            999999999999999988 2 2 2235677764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.74  E-value=2.9e-17  Score=108.82  Aligned_cols=90  Identities=23%  Similarity=0.447  Sum_probs=74.4

Q ss_pred             CeEEEEEEEeecCCCCCCC--CCCCCcEEEEEEcCee----eEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDF--LSNMDPYVVLSCRTQE----KRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~--~~~~dp~v~i~~~~~~----~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~   73 (161)
                      .++|.|.|++|+||+..+.  .+.+||||++++....    ++++.+.++++||+|||.|.|.+...   ...|.|+||+
T Consensus        14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d   93 (138)
T cd08407          14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN   93 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence            5789999999999999883  3459999999986422    23344444999999999999998764   3579999999


Q ss_pred             cCCCCCCceeEEEEEeCcc
Q 046962           74 SDTVSQDDFVGEAIIPLHS   92 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~   92 (161)
                      ++.++++++||++.+++..
T Consensus        94 ~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          94 QDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             CCCCcCcceeceEEecCcC
Confidence            9999999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.73  E-value=3.7e-17  Score=108.25  Aligned_cols=89  Identities=25%  Similarity=0.359  Sum_probs=74.5

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~   74 (161)
                      .++|.|+|++|++|+..+..+.+||||++++...     +.+|++. ++++||+|||+|.|.+...   ...|.|+||++
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~-k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~   92 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVK-RDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES   92 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccc-cCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence            4789999999999999988889999999998432     2234444 4999999999999998654   35899999999


Q ss_pred             CCCCCCceeEEEEEeCcc
Q 046962           75 DTVSQDDFVGEAIIPLHS   92 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~   92 (161)
                      +..+++++||++.+....
T Consensus        93 d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          93 TEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             CCCCCCCeeEEEEECCCC
Confidence            998999999999997653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.71  E-value=2.3e-16  Score=102.51  Aligned_cols=96  Identities=26%  Similarity=0.455  Sum_probs=78.9

Q ss_pred             EEEeecCCCCCCCCCCCCcEEEEEEcCee-------eEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCC----
Q 046962            9 LLVCAKGLQDTDFLSNMDPYVVLSCRTQE-------KRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDT----   76 (161)
Q Consensus         9 ~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-------~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~----   76 (161)
                      -.++|++|+..+..+.+||||.+.+....       .+|.++. ++.||.|+++|.|.+... ...|.|+|||++.    
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~-~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~   83 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIK-NNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKD   83 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeC-CCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCC
Confidence            34789999999988999999999997653       4566666 899999999999986533 4589999999997    


Q ss_pred             CCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      .+++++||++.+++.+|..... ...|+.|
T Consensus        84 ~~~~d~iG~~~i~l~~l~~~~~-~~~~~~l  112 (120)
T cd04048          84 LSDHDFLGEAECTLGEIVSSPG-QKLTLPL  112 (120)
T ss_pred             CCCCcEEEEEEEEHHHHhcCCC-cEEEEEc
Confidence            7899999999999999987543 3456766

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.71  E-value=1.4e-16  Score=105.89  Aligned_cols=102  Identities=19%  Similarity=0.310  Sum_probs=81.0

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC---e---eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---Q---EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~---~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~   73 (161)
                      .++|.|+|++|++|+..+..+.+||||++.+..   .   +++|++.+ ++.||+|||+|.|.+...   ...|.|+||+
T Consensus        14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~   92 (138)
T cd08408          14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRR-GQPDPEFKETFVFQVALFQLSEVTLMFSVYN   92 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeec-CCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence            579999999999999998888999999999852   1   23455554 999999999999998754   3589999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .+.++++++||++.+++...-.+  ....|+.+.
T Consensus        93 ~~~~~~~~~iG~v~l~~~~~~~~--~~~hW~~~l  124 (138)
T cd08408          93 KRKMKRKEMIGWFSLGLNSSGEE--EEEHWNEMK  124 (138)
T ss_pred             CCCCCCCcEEEEEEECCcCCCch--HHHHHHHHH
Confidence            99899999999999887744321  123566554

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.71  E-value=6.2e-17  Score=106.98  Aligned_cols=102  Identities=25%  Similarity=0.421  Sum_probs=84.3

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~   74 (161)
                      .++|.|+|++|++|+..+..+.+||||.+.+...     ..+|++.. ++.+|.|+++|.|.+...   ...|.|+||+.
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~   91 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK   91 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee-cCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence            5789999999999999888889999999998643     23455555 899999999999998765   36899999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEeec
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK  108 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~  108 (161)
                      +..+++++||++.+++++  . +.....|+.|..
T Consensus        92 ~~~~~~~~lG~~~i~l~~--~-~~~~~~W~~l~~  122 (134)
T cd00276          92 DSVGRNEVIGQVVLGPDS--G-GEELEHWNEMLA  122 (134)
T ss_pred             CCCCCCceeEEEEECCCC--C-CcHHHHHHHHHh
Confidence            988899999999999999  2 233467888763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.71  E-value=7.5e-17  Score=140.43  Aligned_cols=117  Identities=17%  Similarity=0.406  Sum_probs=99.1

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCee-eEEEEeeCCCCCCeeccEEEEEEeCCC--CeEEEEEEecCCCCC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE-KRSSVASGQGTTPNWNENFVFTISEGT--TALKLKIMDSDTVSQ   79 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~--~~l~i~v~~~~~~~~   79 (161)
                      .|.|.|+|++|.+|.  +.++.+||||.+.+++.. .+|++++ ++.||.|+|.|.|.+..+.  ..|.|+|||++.+++
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk-~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVS-HSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccC-CCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence            589999999999998  446899999999999774 4556665 9999999999998877653  579999999999854


Q ss_pred             CceeEEEEEeCccccccCCccceeEEeecCCeeceE---EEEEEEEEe
Q 046962           80 DDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGE---VRVGLTFKP  124 (161)
Q Consensus        80 d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~---i~l~l~~~~  124 (161)
                       +.+|.+.+++.++...+. ...||.|..++...|+   |+|.+.|.+
T Consensus      2056 -d~~G~~~i~l~~vv~~~~-~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2056 -SSLGKVTIQIDRVVMEGT-YSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             -CCCceEEEEHHHHhcCce-eeeeeecCcccccCCCcceEEEEEEecC
Confidence             589999999999998644 4589999877778899   999998865

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.70  E-value=2e-16  Score=104.67  Aligned_cols=102  Identities=23%  Similarity=0.397  Sum_probs=80.2

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEe
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMD   73 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~   73 (161)
                      +.++|+|+|++|++|+..+..+.+||||++.+...     ..+|++. +++.+|.|+|+|.|.+....   ..|.|+|||
T Consensus        12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVK-KNTLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcc-cCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            46899999999999999998899999999998421     2344444 48999999999999975442   368999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      ++.++++++||++.+++....   .....|+.+.
T Consensus        91 ~~~~~~~~~IG~~~l~~~~~~---~~~~~w~~~~  121 (134)
T cd08403          91 YDRVGHNELIGVCRVGPNADG---QGREHWNEML  121 (134)
T ss_pred             CCCCCCCceeEEEEECCCCCC---chHHHHHHHH
Confidence            999999999999999876321   2234566554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.70  E-value=2.7e-16  Score=104.22  Aligned_cols=103  Identities=24%  Similarity=0.382  Sum_probs=79.1

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD   73 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~   73 (161)
                      ..|.|.|+|++|++|+..+..+.+||||.+.+..     ...+|.++ +++.||.|+|+|.|.+...   ...|.|+|||
T Consensus        12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~-~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCM-RGTIDPFYNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccc-cCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence            3589999999999999999888999999999732     12344444 4899999999999998554   2369999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      ++..+++++||++.+......  ......|+.+.
T Consensus        91 ~d~~~~~~~iG~~~l~~~~~~--~~~~~~W~~l~  122 (135)
T cd08410          91 HNVKSSNDFIGRIVIGQYSSG--PSETNHWRRML  122 (135)
T ss_pred             CCCCCCCcEEEEEEEcCccCC--chHHHHHHHHH
Confidence            998889999999876543332  22234677654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.69  E-value=7.8e-16  Score=100.40  Aligned_cols=94  Identities=28%  Similarity=0.458  Sum_probs=78.1

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~   73 (161)
                      .++|.|+|++|++|+..+..+.+||||++.+..     ...+|..+. ++.+|.|+++|.|.....    ...|.|+|||
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d   92 (123)
T cd04035          14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH-KTRNPEFNETLTYYGITEEDIQRKTLRLLVLD   92 (123)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeec-CCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence            578999999999999988888999999998732     234566665 899999999999963322    3589999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCC
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGN   98 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~   98 (161)
                      .+.. .+++||++.+++++|..+..
T Consensus        93 ~~~~-~~~~iG~~~i~l~~l~~~~~  116 (123)
T cd04035          93 EDRF-GNDFLGETRIPLKKLKPNQT  116 (123)
T ss_pred             cCCc-CCeeEEEEEEEcccCCCCcc
Confidence            9988 89999999999999987643

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.69  E-value=2.7e-16  Score=104.35  Aligned_cols=90  Identities=27%  Similarity=0.479  Sum_probs=76.1

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~   74 (161)
                      .++|.|+|++|++|+..+..+.+||||++.+..     ...+|+++. ++.||.|||+|.|.+...   ...|.|+|||.
T Consensus        14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~   92 (136)
T cd08405          14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERLRETTLIITVMDK   92 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence            478999999999999988888999999998832     123455555 899999999999997643   35799999999


Q ss_pred             CCCCCCceeEEEEEeCccc
Q 046962           75 DTVSQDDFVGEAIIPLHSV   93 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l   93 (161)
                      +..+++++||++.+++.+.
T Consensus        93 ~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          93 DRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCCcEeEEEEECCccC
Confidence            9998999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.68  E-value=7.3e-16  Score=101.09  Aligned_cols=90  Identities=14%  Similarity=0.361  Sum_probs=72.3

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC----e-eeEEEEeeCCCC-CCeeccEEEEEEeCCC--CeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT----Q-EKRSSVASGQGT-TPNWNENFVFTISEGT--TALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~----~-~~~t~~~~~~~~-~P~w~e~~~~~~~~~~--~~l~i~v~~~   74 (161)
                      .|+|+|.|++|++|+.......+||||+|++..    . +++|++.+ ++. +|+|||+|.|++....  ..+.++|||+
T Consensus        13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k-~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~   91 (135)
T cd08692          13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVK-SSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR   91 (135)
T ss_pred             CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEE-CCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence            588999999999999876556779999998842    1 23344444 775 6999999999987653  3678999999


Q ss_pred             CCCCCCceeEEEEEeCccc
Q 046962           75 DTVSQDDFVGEAIIPLHSV   93 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l   93 (161)
                      +..+++++||++.+..+..
T Consensus        92 ~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          92 SSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             CCCcCCceEEEEEECCccC
Confidence            9888999999999998753

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.67  E-value=9.9e-16  Score=101.72  Aligned_cols=101  Identities=23%  Similarity=0.414  Sum_probs=78.6

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~   74 (161)
                      .++|.|+|++|++|+..+ .+.+||||++.+...     .++|++. +++.||.|||+|.|.+...   ...|.|+||+.
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~-~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~   91 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVV-DGAASPSFNESFSFKVTSRQLDTASLSLSVMQS   91 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccE-eCCCCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence            478999999999999988 778999999998532     2344554 4999999999999998654   35899999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      +..+++++||++.+.......+.. ...|..+
T Consensus        92 ~~~~~~~~lG~v~ig~~~~~~~~~-~~hW~~~  122 (137)
T cd08409          92 GGVRKSKLLGRVVLGPFMYARGKE-LEHWNDM  122 (137)
T ss_pred             CCCCCcceEEEEEECCcccCCChH-HHHHHHH
Confidence            988899999999998655443322 2345544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.67  E-value=1.5e-15  Score=97.20  Aligned_cols=80  Identities=25%  Similarity=0.534  Sum_probs=65.9

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEec------
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDS------   74 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~------   74 (161)
                      |.|+|.+|+||+     +.+||||.+.+..     ...+|++++ +++||+|||+|.|.+.. ...|.+.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~-~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCR-DTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeec-CCCCCccceEEEEEeCC-CCEEEEEEEEccccccc
Confidence            679999999996     4599999998863     234566665 99999999999999975 57999999998      


Q ss_pred             -CCCCCCceeEEEEEeCcc
Q 046962           75 -DTVSQDDFVGEAIIPLHS   92 (161)
Q Consensus        75 -~~~~~d~~iG~~~~~l~~   92 (161)
                       +..+.|+++|++.+.|+.
T Consensus        74 ~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccccCcccEEEEEEEEECH
Confidence             455789999888887654

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.67  E-value=3.9e-17  Score=123.13  Aligned_cols=101  Identities=26%  Similarity=0.410  Sum_probs=86.9

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC--CCeEEEEEEecCC
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG--TTALKLKIMDSDT   76 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~l~i~v~~~~~   76 (161)
                      ..|+|+|.+|++|.++|.+|.+|||+.+.+-.     .+++|+.++ .++||+|||+|.|.+...  .+.|.|+||||+.
T Consensus       180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEecccccccceeEEEEecccc
Confidence            57899999999999999999999999999842     223455665 999999999999998776  3589999999999


Q ss_pred             CCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .++++|+|...+.+++|.....  ..||.|+
T Consensus       259 TsRNDFMGslSFgisEl~K~p~--~GWyKlL  287 (683)
T KOG0696|consen  259 TSRNDFMGSLSFGISELQKAPV--DGWYKLL  287 (683)
T ss_pred             cccccccceecccHHHHhhcch--hhHHHHh
Confidence            9999999999999999988643  4799876

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.65  E-value=4.2e-15  Score=95.10  Aligned_cols=88  Identities=24%  Similarity=0.516  Sum_probs=72.3

Q ss_pred             EEEEEeecCCCCCCCCCCCCcEEEEEEcCe------eeEEEEeeCCCCCCeeccEEEEEEeC---C--CCeEEEEEEecC
Q 046962            7 EVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ------EKRSSVASGQGTTPNWNENFVFTISE---G--TTALKLKIMDSD   75 (161)
Q Consensus         7 ~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~------~~~t~~~~~~~~~P~w~e~~~~~~~~---~--~~~l~i~v~~~~   75 (161)
                      .+-.++|++|+..+..+.+||||++++...      ..+|++++ ++.+|.|+ +|.+.+..   .  ...|.|+|||++
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~-~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d   80 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIK-NTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD   80 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEec-cCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence            345678999999998899999999988543      24566665 89999999 78877432   1  468999999999


Q ss_pred             CCCCCceeEEEEEeCcccccc
Q 046962           76 TVSQDDFVGEAIIPLHSVFEA   96 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~   96 (161)
                      ..++|++||++.+++.+|...
T Consensus        81 ~~~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          81 SSGKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCCCCcEEEEEEEEHHHHhcC
Confidence            999999999999999999854

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.64  E-value=4.6e-15  Score=122.41  Aligned_cols=145  Identities=22%  Similarity=0.381  Sum_probs=120.9

Q ss_pred             CCeEEEEEEEeecCCCCCC--CCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCC
Q 046962            2 PKGTLEVLLVCAKGLQDTD--FLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQ   79 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~--~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~   79 (161)
                      +.|.+.|+|.+|++|...+  ..+..|||+.+.+......++.+++.+.||+|||+|-+.+..-.+.|.++|||.+....
T Consensus       434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~s  513 (1227)
T COG5038         434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKS  513 (1227)
T ss_pred             eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccCC
Confidence            4689999999999999988  45889999999986554444444449999999999999998878899999999999999


Q ss_pred             CceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEEeCCCCCCCCCC--CccCCCCCCCCC
Q 046962           80 DDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPEGGHGHHSHG--RAAGESHSGGDR  146 (161)
Q Consensus        80 d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~~~~~~~~~~~~--~~~~~~~~~~~~  146 (161)
                      |+.+|.++++|+.|..........+.+..+....|+|...+.|+|..+......+  .|..+...|.+.
T Consensus       514 d~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k  582 (1227)
T COG5038         514 DKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILK  582 (1227)
T ss_pred             cceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeE
Confidence            9999999999999988766666678888889999999999999999998876666  334444445443

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.57  E-value=2.2e-14  Score=86.99  Aligned_cols=81  Identities=28%  Similarity=0.555  Sum_probs=69.3

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCc
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~   81 (161)
                      |.|+|++|++|+..+..+.++||+.+.+..   ...+|+... .+.+|.|++.|.|.+... ...|.|+||+++..++++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~   79 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKK-NTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE   79 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBS-SBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeee-ccccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence            789999999999988778999999999986   345566665 889999999999996554 347999999999998899


Q ss_pred             eeEEEE
Q 046962           82 FVGEAI   87 (161)
Q Consensus        82 ~iG~~~   87 (161)
                      +||++.
T Consensus        80 ~iG~~~   85 (85)
T PF00168_consen   80 LIGEVK   85 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999873

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=1.1e-14  Score=114.42  Aligned_cols=121  Identities=26%  Similarity=0.525  Sum_probs=100.2

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCC------
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTV------   77 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~------   77 (161)
                      .+++++|+.|.+|..+|..|.+|||+.+.++..+.+|+.+. ..+||+|+|.|.|.+.+....|.+.|||.++.      
T Consensus       295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~-~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr  373 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIH-QELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR  373 (1283)
T ss_pred             eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhh-hccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence            57899999999999999999999999999998888887777 89999999999999999888999999998753      


Q ss_pred             -----CCCceeEEEEEeCccccccCCccceeEEee---cCCeeceEEEEEEEEEeCCCC
Q 046962           78 -----SQDDFVGEAIIPLHSVFEAGNVPQQAYNVV---KDKKFQGEVRVGLTFKPEGGH  128 (161)
Q Consensus        78 -----~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~---~~~~~~G~i~l~l~~~~~~~~  128 (161)
                           ..|+|+|+..+.+..|..+.   ..||.|.   ......|-|++.|...-..+.
T Consensus       374 qkl~resddflgqtvievrtlsgem---dvwynlekrtdksavsgairlhisveikgee  429 (1283)
T KOG1011|consen  374 QKLTRESDDFLGQTVIEVRTLSGEM---DVWYNLEKRTDKSAVSGAIRLHISVEIKGEE  429 (1283)
T ss_pred             HHhhhcccccccceeEEEEecccch---hhhcchhhccchhhccceEEEEEEEEEcCcc
Confidence                 36889999999887776543   4799997   344567877766665444433

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.55  E-value=2.7e-14  Score=112.74  Aligned_cols=121  Identities=21%  Similarity=0.301  Sum_probs=107.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeee-EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV   83 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i   83 (161)
                      .|.|+|.+|++|+..+..+..||||.|.++.... ||.++. +++.|-|.|+|.|.+......|.|-|||.+ +++|+.|
T Consensus         6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            5889999999999999999999999999987665 566666 999999999999999998889999999999 8899999


Q ss_pred             EEEEEeCccccccCCccceeEEee---cCCeeceEEEEEEEEEeCCCC
Q 046962           84 GEAIIPLHSVFEAGNVPQQAYNVV---KDKKFQGEVRVGLTFKPEGGH  128 (161)
Q Consensus        84 G~~~~~l~~l~~~~~~~~~~~~l~---~~~~~~G~i~l~l~~~~~~~~  128 (161)
                      |.+.+.=++|.... ....|+.|.   .+.+..|+|++++.+.+....
T Consensus        84 GKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~  130 (800)
T KOG2059|consen   84 GKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQS  130 (800)
T ss_pred             ceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEeccccCC
Confidence            99999989988765 456899998   577889999999999866554

>cd00030 C2 C2 domain

Probab=99.54  E-value=1.6e-13  Score=85.03  Aligned_cols=100  Identities=31%  Similarity=0.560  Sum_probs=81.9

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcC-eeeEEEEeeCCCCCCeeccEEEEEEeC-CCCeEEEEEEecCCCCCCcee
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-QEKRSSVASGQGTTPNWNENFVFTISE-GTTALKLKIMDSDTVSQDDFV   83 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~l~i~v~~~~~~~~d~~i   83 (161)
                      |.|.|++|++|.........+|||.+.+.. ...+|.... .+.+|.|++.|.|.+.. ....|.|+||+.+....+.++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~-~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i   79 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL   79 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeC-CCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence            478999999998876667899999999987 555666665 78899999999999987 557899999999988778999


Q ss_pred             EEEEEeCccccccCCccceeEEe
Q 046962           84 GEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        84 G~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      |++.+++.++.........|+.|
T Consensus        80 g~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          80 GEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEEeHHHhhhcCCcCcceecC
Confidence            99999999998322334466643

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02270 phospholipase D alpha

Probab=99.53  E-value=7.4e-13  Score=107.45  Aligned_cols=150  Identities=14%  Similarity=0.269  Sum_probs=118.2

Q ss_pred             CeEEEEEEEeecCCCCCC------------------CCCCCCcEEEEEEcCeeeE-EEEeeCCCCCCeeccEEEEEEeCC
Q 046962            3 KGTLEVLLVCAKGLQDTD------------------FLSNMDPYVVLSCRTQEKR-SSVASGQGTTPNWNENFVFTISEG   63 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~------------------~~~~~dp~v~i~~~~~~~~-t~~~~~~~~~P~w~e~~~~~~~~~   63 (161)
                      -|+|.|+|++|++|+..+                  ..+.++||+.|.++..+.. |+++.....||.|+|+|.+++...
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            388999999999998521                  1135799999999988874 555553356999999999999988


Q ss_pred             CCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEee-cCCee---ceEEEEEEEEEeCCCCCCCCCCCccCC
Q 046962           64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKKF---QGEVRVGLTFKPEGGHGHHSHGRAAGE  139 (161)
Q Consensus        64 ~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~~---~G~i~l~l~~~~~~~~~~~~~~~~~~~  139 (161)
                      ...+.|+|.+.+.++ ..+||.+.+|..++..+.. ...|+.+. .++++   ..+|++++.|.|-........|-..+ 
T Consensus        87 ~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~-i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~~gv~~~-  163 (808)
T PLN02270         87 ASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEE-VDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRSA-  163 (808)
T ss_pred             cceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCc-cccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcchhcccCCc-
Confidence            889999999999885 4599999999999998754 46899987 33332   24899999999988887777776333 


Q ss_pred             CCCCCCCCCCCCCCCC
Q 046962          140 SHSGGDRGYGGESYGG  155 (161)
Q Consensus       140 ~~~~~~~~~~~~~~~g  155 (161)
                      ...|+...+..+.-|+
T Consensus       164 ~~~gvp~t~f~~r~g~  179 (808)
T PLN02270        164 KFPGVPYTFFSQRQGC  179 (808)
T ss_pred             CcCCCCCcccccCCCC
Confidence            6788887777766554

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.51  E-value=5e-13  Score=83.09  Aligned_cols=92  Identities=33%  Similarity=0.625  Sum_probs=78.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe---eeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCC
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ---EKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQD   80 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~---~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d   80 (161)
                      +|.|.|++|++|.........+||+.+.+...   ..+|+... ++.+|.|+++|.|.+... ...|.|+||+....+.+
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~   79 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVK-NTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRD   79 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEec-CCCCCcccceEEEEecCcccCEEEEEEEecCCccCC
Confidence            37899999999998876678999999999865   45666665 777999999999999886 67999999999988788


Q ss_pred             ceeEEEEEeCccccccC
Q 046962           81 DFVGEAIIPLHSVFEAG   97 (161)
Q Consensus        81 ~~iG~~~~~l~~l~~~~   97 (161)
                      .++|.+.+++.++..+.
T Consensus        80 ~~~G~~~~~l~~~~~~~   96 (101)
T smart00239       80 DFIGQVTIPLSDLLLGG   96 (101)
T ss_pred             ceeEEEEEEHHHcccCc
Confidence            99999999999887653

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02223 phosphoinositide phospholipase C

Probab=99.39  E-value=1.5e-11  Score=96.39  Aligned_cols=99  Identities=21%  Similarity=0.377  Sum_probs=78.6

Q ss_pred             eEEEEEEEeecCCCCC-----CCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEEEE
Q 046962            4 GTLEVLLVCAKGLQDT-----DFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLKIM   72 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~-----~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~v~   72 (161)
                      .+|.|+|+.|.+++..     +....+||||+|.+..     ..++| .+..++.||.|+|+|.|.+..++. .|.|+|+
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT-~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKT-TVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEE-EeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            5799999999987521     2235689999999852     23345 455689999999999999988865 6899999


Q ss_pred             ecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           73 DSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        73 ~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      |.+....++|+|+..+|+..|..+-    +...|.
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy----R~VpL~  518 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI----RAVPLY  518 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc----eeEecc
Confidence            9998888999999999999999862    455554

>PLN02952 phosphoinositide phospholipase C

Probab=99.38  E-value=1.9e-11  Score=97.37  Aligned_cols=114  Identities=23%  Similarity=0.361  Sum_probs=86.6

Q ss_pred             eEEEEEEEeecCCCCC------CCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEEE
Q 046962            4 GTLEVLLVCAKGLQDT------DFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLKI   71 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~------~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~v   71 (161)
                      .+|.|+|++|.+++..      +....+||||.|.+..     ...+|+++. ++.||+|+++|.|.+..+.. .+.|+|
T Consensus       470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~-nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIE-DNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeecc-CCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            5799999999987532      1123469999998742     344666665 67999999999999888754 678999


Q ss_pred             EecCCCCCCceeEEEEEeCccccccCCccceeEEee-cCCeeceEEEEEEEE
Q 046962           72 MDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKKFQGEVRVGLTF  122 (161)
Q Consensus        72 ~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~~~G~i~l~l~~  122 (161)
                      ||++..+.++|+|+..+|+..|..+-    +|..|. ..+...+.+.|-+.|
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy----R~VpL~~~~G~~l~~a~Llv~f  596 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI----RSVPLHDKKGEKLKNVRLLMRF  596 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc----eeEeCcCCCCCCCCCEEEEEEE
Confidence            99998888999999999999999862    577776 455555555555544

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.35  E-value=1.7e-11  Score=80.44  Aligned_cols=91  Identities=24%  Similarity=0.346  Sum_probs=72.9

Q ss_pred             EEEEEEeecCCCCCC--CCC--CCCcEEEEEEcCe--e-eEEEEeeCCCCC--CeeccEEEEEEeC--------------
Q 046962            6 LEVLLVCAKGLQDTD--FLS--NMDPYVVLSCRTQ--E-KRSSVASGQGTT--PNWNENFVFTISE--------------   62 (161)
Q Consensus         6 l~v~i~~a~~L~~~~--~~~--~~dp~v~i~~~~~--~-~~t~~~~~~~~~--P~w~e~~~~~~~~--------------   62 (161)
                      |+|.|.+|++++..+  ..+  .+||||+..+...  . ++|.+.. +++|  |.||+.|.|++..              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHy-rslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHY-RSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEE-ecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            789999999966543  345  3999999998752  3 3455554 8889  9999999988665              


Q ss_pred             -------C---CCeEEEEEEecCCCCCCceeEEEEEeCccccccC
Q 046962           63 -------G---TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG   97 (161)
Q Consensus        63 -------~---~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~   97 (161)
                             .   ...|.++|||.+.+++|+++|.++++|..|..+.
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                   1   2479999999999999999999999999887753

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=1.3e-11  Score=95.60  Aligned_cols=90  Identities=29%  Similarity=0.514  Sum_probs=75.8

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe----eeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEecC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ----EKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMDSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~----~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~~~   75 (161)
                      .|+|+|.|++|++|+..+..+..||||++.+...    .++++.++++++||+|+|+|.|.+....   -.|.|+||+++
T Consensus       297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d  376 (421)
T KOG1028|consen  297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHD  376 (421)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcc
Confidence            4899999999999999999999999999988532    2344555569999999999999887652   37899999999


Q ss_pred             CCCCCceeEEEEEeCcc
Q 046962           76 TVSQDDFVGEAIIPLHS   92 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~   92 (161)
                      .++.+++||++.+....
T Consensus       377 ~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  377 TLGSNDLIGRCILGSDS  393 (421)
T ss_pred             cccccceeeEEEecCCC
Confidence            99999999998887654

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.32  E-value=8.6e-12  Score=77.57  Aligned_cols=85  Identities=20%  Similarity=0.363  Sum_probs=70.5

Q ss_pred             EEEEEEeecCCCCCC---CCCCCCcEEEEEEcCeee-EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCc
Q 046962            6 LEVLLVCAKGLQDTD---FLSNMDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         6 l~v~i~~a~~L~~~~---~~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~   81 (161)
                      |.|+|..++++....   +++.++||+.|.++.... +|+.    +.||.|+|+|.|++.. ...+.+.|||.... ..-
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk-~nEiel~VyDk~~~-~~~   74 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK-NNEEEVIVYDKGGD-QPV   74 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC-CcEEEEEEEeCCCC-eec
Confidence            679999999999887   567899999999998753 4444    3599999999999964 57999999999754 556


Q ss_pred             eeEEEEEeCcccccc
Q 046962           82 FVGEAIIPLHSVFEA   96 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~   96 (161)
                      .||..++.+++|..+
T Consensus        75 Pi~llW~~~sdi~Ee   89 (109)
T cd08689          75 PVGLLWLRLSDIAEE   89 (109)
T ss_pred             ceeeehhhHHHHHHH
Confidence            899999999998763

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.30  E-value=1.9e-11  Score=101.58  Aligned_cols=120  Identities=22%  Similarity=0.387  Sum_probs=93.7

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCc
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~   81 (161)
                      .|-|+|.+..|.||+..+..+.+||||.+.+.++...++.+.++++||+|||++.+++.+. ...+.+.|+||+...+++
T Consensus      1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd 1118 (1227)
T COG5038        1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKND 1118 (1227)
T ss_pred             cCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCcc
Confidence            5889999999999999999999999999999877554444444999999999999998865 458899999999999999


Q ss_pred             eeEEEEEeCccccccCCccceeEE-eecCC--eeceEEEEEEEEEe
Q 046962           82 FVGEAIIPLHSVFEAGNVPQQAYN-VVKDK--KFQGEVRVGLTFKP  124 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~-l~~~~--~~~G~i~l~l~~~~  124 (161)
                      .||.+.++|..|..+..-  .|.- |....  ...|.++....|-+
T Consensus      1119 ~lg~~~idL~~l~~~~~~--n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038        1119 LLGTAEIDLSKLEPGGTT--NSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred             ccccccccHhhcCcCCcc--ceeeeccCcceEecccEeecceecch
Confidence            999999999999876542  2322 22111  34456665555543

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.29  E-value=5.9e-11  Score=95.11  Aligned_cols=115  Identities=20%  Similarity=0.396  Sum_probs=87.3

Q ss_pred             EEEEEEEeecCCCCCCC----CCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEEEEec
Q 046962            5 TLEVLLVCAKGLQDTDF----LSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLKIMDS   74 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~----~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~v~~~   74 (161)
                      +|.|+|++|.+++....    ....|||+.|.+..     ...+|+++..++.+|.|+|+|.|++..+.. .|+|.|+|.
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            69999999997655432    14579999988743     345788788899999999999999999876 679999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee-cCCe--eceEEEEEEEEE
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKK--FQGEVRVGLTFK  123 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~--~~G~i~l~l~~~  123 (161)
                      +..++|+|+|+..+|+..|..+-    +-..|. ..++  ..-.|-+.+++.
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~Gy----RhVpL~~~~G~~~~~asLfv~i~~~  744 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGY----RHVPLLSREGEALSSASLFVRIAIV  744 (746)
T ss_pred             CCCCcccccceeeccHHHhhCce----eeeeecCCCCccccceeEEEEEEEe
Confidence            99999999999999999998852    233343 2222  234566666654

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.28  E-value=1.1e-10  Score=93.01  Aligned_cols=93  Identities=24%  Similarity=0.395  Sum_probs=74.9

Q ss_pred             CeEEEEEEEeecCCCCC------CCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEE
Q 046962            3 KGTLEVLLVCAKGLQDT------DFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLK   70 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~------~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~   70 (161)
                      ..+|.|+|+.+.+++..      +....+||||+|.+..     ...+|+ +..++.||.|+++|.|.+..++. .|+|+
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~-v~~n~~nP~Wneef~F~l~vPELAllRf~  546 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTK-IEYDTWTPIWNKEFIFPLAVPELALLRVE  546 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCccccee-ccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence            35799999999987421      2224579999999842     234555 44589999999999999988865 77999


Q ss_pred             EEecCCCCCCceeEEEEEeCcccccc
Q 046962           71 IMDSDTVSQDDFVGEAIIPLHSVFEA   96 (161)
Q Consensus        71 v~~~~~~~~d~~iG~~~~~l~~l~~~   96 (161)
                      |+|.+...+++|+|+..+|+..|..+
T Consensus       547 V~d~d~~~~ddfiGQ~~lPv~~Lr~G  572 (598)
T PLN02230        547 VHEHDINEKDDFGGQTCLPVSEIRQG  572 (598)
T ss_pred             EEECCCCCCCCEEEEEEcchHHhhCc
Confidence            99999888999999999999999885

>PLN02352 phospholipase D epsilon

Probab=99.26  E-value=2.4e-10  Score=92.85  Aligned_cols=144  Identities=15%  Similarity=0.202  Sum_probs=109.3

Q ss_pred             CeEEEEEEEeecCCCCCC----CC-CCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEecCC
Q 046962            3 KGTLEVLLVCAKGLQDTD----FL-SNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGT-TALKLKIMDSDT   76 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~----~~-~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~~~~   76 (161)
                      -|+|.++|.+|+-+...-    .. ...+||+.|.++..+..++  . +..||.|+|+|.+++.... ..+.|+|.+   
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt--~-~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---   82 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT--S-HEYDRVWNQTFQILCAHPLDSTITITLKT---   82 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC--C-CCCCCccccceeEEeeeecCCcEEEEEec---
Confidence            489999999998332221    11 1239999999998887655  3 5669999999999998886 589999988   


Q ss_pred             CCCCceeEEEEEeCccccccCCccceeEEee-cCCee-c-eEEEEEEEEEeCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 046962           77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKKF-Q-GEVRVGLTFKPEGGHGHHSHGRAAGESHSGGDRGYGGESY  153 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~~-~-G~i~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (161)
                        ...+||.+.+|..+|..+......|+.+. .++++ . .+|++++.|.|.........|-..+ ...|+...+..+.-
T Consensus        83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~gvp~~~f~~r~  159 (758)
T PLN02352         83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELEPTWCKILENG-SFQGLRNATFPQRS  159 (758)
T ss_pred             --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCcchhhcccCC-CcCCcCCcccccCC
Confidence              36799999999999998755457899987 33332 3 4899999999999988777775443 56788877777665


Q ss_pred             CC
Q 046962          154 GG  155 (161)
Q Consensus       154 ~g  155 (161)
                      |+
T Consensus       160 g~  161 (758)
T PLN02352        160 NC  161 (758)
T ss_pred             CC
Confidence            44

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.22  E-value=5.7e-10  Score=88.82  Aligned_cols=92  Identities=25%  Similarity=0.397  Sum_probs=74.1

Q ss_pred             eEEEEEEEeecCCCC--C----CCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEEE
Q 046962            4 GTLEVLLVCAKGLQD--T----DFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLKI   71 (161)
Q Consensus         4 g~l~v~i~~a~~L~~--~----~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~v   71 (161)
                      .+|.|+|+.|.+++.  .    +....+||||.|.+.     ....+|+.+. ++.+|.|+++|.|.+..++. .|+|.|
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~-nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLE-DNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecC-CCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            579999999987531  1    122467999999984     3345677776 66899999999999888765 679999


Q ss_pred             EecCCCCCCceeEEEEEeCcccccc
Q 046962           72 MDSDTVSQDDFVGEAIIPLHSVFEA   96 (161)
Q Consensus        72 ~~~~~~~~d~~iG~~~~~l~~l~~~   96 (161)
                      ||.+....++|+|+..+|+..|..+
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~G  555 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQG  555 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCc
Confidence            9999878899999999999999885

>PLN02228 Phosphoinositide phospholipase C

Probab=99.20  E-value=7.7e-10  Score=87.88  Aligned_cols=118  Identities=24%  Similarity=0.340  Sum_probs=87.3

Q ss_pred             eEEEEEEEeecCCCC---CC---CCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCee-ccEEEEEEeCCCC-eEEEE
Q 046962            4 GTLEVLLVCAKGLQD---TD---FLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNW-NENFVFTISEGTT-ALKLK   70 (161)
Q Consensus         4 g~l~v~i~~a~~L~~---~~---~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w-~e~~~~~~~~~~~-~l~i~   70 (161)
                      .+|.|+|++|.+|+.   ..   ....+||||.|.+..     ...+|+++. ++.+|.| +++|.|.+..++. .|+|.
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~-n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAV-DQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccC-CCCCceECCCeEEEEEEcCceeEEEEE
Confidence            479999999998732   11   223589999998742     334666665 6789999 9999999888754 67899


Q ss_pred             EEecCCCCCCceeEEEEEeCccccccCCccceeEEee-cCCe--eceEEEEEEEEEeCC
Q 046962           71 IMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKK--FQGEVRVGLTFKPEG  126 (161)
Q Consensus        71 v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~--~~G~i~l~l~~~~~~  126 (161)
                      |+|.+..+.++|+|+..+|+..|..+    -+...|. ..+.  ....|.+.+.+.+..
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~G----YR~VpL~~~~G~~l~~atLfv~~~~~~~~  564 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSG----VRAVRLHDRAGKAYKNTRLLVSFALDPPY  564 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCC----eeEEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence            99999888899999999999999875    2344554 2222  345688888877543

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=99.19  E-value=3.1e-10  Score=91.64  Aligned_cols=123  Identities=21%  Similarity=0.320  Sum_probs=96.1

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeec-cEEEEEEeCCCC-eEEEEEEecC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWN-ENFVFTISEGTT-ALKLKIMDSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~-e~~~~~~~~~~~-~l~i~v~~~~   75 (161)
                      ..+|.|.|+.|+.|+.... +...|||.|.+-     ...++|+.+..+++||+|+ ++|.|.+.+++- .|+|.|++.+
T Consensus      1064 p~~lsv~vigaRHL~k~gr-~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGR-SIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccCCC-CccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence            3678999999999996654 567799999873     4456677666699999999 999999998854 7899999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEee---cCCeeceEEEEEEEEEeCCCCCC
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV---KDKKFQGEVRVGLTFKPEGGHGH  130 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~---~~~~~~G~i~l~l~~~~~~~~~~  130 (161)
                      .++...|||++.+|+..+..+    .+...|.   .+.-....|.|.+...|..+.+.
T Consensus      1143 mfs~~~FiaqA~yPv~~ik~G----fRsVpLkN~ySEdlELaSLLv~i~m~~~~~~~~ 1196 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG----FRSVPLKNGYSEDLELASLLVFIEMRPVLESEE 1196 (1267)
T ss_pred             ccCCcceeeeeecchhhhhcc----ceeeecccCchhhhhhhhheeeeEeccccCccc
Confidence            999889999999999998875    2344453   12234566788888777666543

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.17  E-value=7.3e-12  Score=99.73  Aligned_cols=122  Identities=28%  Similarity=0.444  Sum_probs=95.2

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcC-------------e-----------------eeEEEEeeCCCCCCeeccE
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-------------Q-----------------EKRSSVASGQGTTPNWNEN   55 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-------------~-----------------~~~t~~~~~~~~~P~w~e~   55 (161)
                      +.|.+.+|++|..++..|.+|||+...+..             +                 ..+.+.+++.|+||.|+|.
T Consensus       116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek  195 (1103)
T KOG1328|consen  116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK  195 (1103)
T ss_pred             HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence            445667899999999999999999986520             0                 0133556669999999999


Q ss_pred             EEEEEeCCC-CeEEEEEEecCCC------------------------------------CCCceeEEEEEeCccccccCC
Q 046962           56 FVFTISEGT-TALKLKIMDSDTV------------------------------------SQDDFVGEAIIPLHSVFEAGN   98 (161)
Q Consensus        56 ~~~~~~~~~-~~l~i~v~~~~~~------------------------------------~~d~~iG~~~~~l~~l~~~~~   98 (161)
                      |.|.+..-+ .++.+.|||++..                                    ..|+|+|++.+|+.++...+-
T Consensus       196 F~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~Gl  275 (1103)
T KOG1328|consen  196 FQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPDGL  275 (1103)
T ss_pred             eeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcchH
Confidence            999987764 4899999997742                                    248999999999999987543


Q ss_pred             ccceeEEee---cCCeeceEEEEEEEEEeCCCCC
Q 046962           99 VPQQAYNVV---KDKKFQGEVRVGLTFKPEGGHG  129 (161)
Q Consensus        99 ~~~~~~~l~---~~~~~~G~i~l~l~~~~~~~~~  129 (161)
                        .+||+|.   ...+..|++++.+-++...++.
T Consensus       276 --d~WFkLepRS~~S~VqG~~~LklwLsT~e~~~  307 (1103)
T KOG1328|consen  276 --DQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGR  307 (1103)
T ss_pred             --HHHhccCcccccccccceEEEEEEEeeecccc
Confidence              5899997   3456789999999987655543

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.06  E-value=1.4e-09  Score=85.43  Aligned_cols=120  Identities=23%  Similarity=0.395  Sum_probs=98.3

Q ss_pred             CCeEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcCeeeEEEEeeCCCCCCeec-cEEEEEEeCC---CCeEEEEEEecCC
Q 046962            2 PKGTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRTQEKRSSVASGQGTTPNWN-ENFVFTISEG---TTALKLKIMDSDT   76 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~-e~~~~~~~~~---~~~l~i~v~~~~~   76 (161)
                      +.|+|-|+|..|++||-+|.. ...|.|+.|.+.+..++|.+.. +++||.|| +.|.|+++..   ...|.|.+.|++.
T Consensus         1 mpgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~-kslnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen    1 MPGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFL-KSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             CCCcceeEEEeccCCcccccccccchheeEEEecccceehhhhh-hhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            358999999999999999865 4579999999999999999888 99999998 8899998765   3489999999998


Q ss_pred             CCCCceeEEEEEeCcccccc---------CCccceeEEeec-CCeeceEEEEEEEE
Q 046962           77 VSQDDFVGEAIIPLHSVFEA---------GNVPQQAYNVVK-DKKFQGEVRVGLTF  122 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l~~~---------~~~~~~~~~l~~-~~~~~G~i~l~l~~  122 (161)
                      .+.++-||.+.+.++.|..+         +.....|+.+.. -.-.+|+|.+-+..
T Consensus        80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv  135 (1169)
T KOG1031|consen   80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV  135 (1169)
T ss_pred             cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence            88999999999999887542         234467888763 23467888765554

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.89  E-value=6.3e-10  Score=88.99  Aligned_cols=90  Identities=30%  Similarity=0.465  Sum_probs=76.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCee-------eEEEEeeCCCCCCeeccEEEEEEeCCC-----CeEEEEEE
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE-------KRSSVASGQGTTPNWNENFVFTISEGT-----TALKLKIM   72 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-------~~t~~~~~~~~~P~w~e~~~~~~~~~~-----~~l~i~v~   72 (161)
                      +|.|.|+.|+++.+.|.+|.+||||.|.+..+.       ++|.+.. +++||+|+|.|.|.+..+.     --|.|+|.
T Consensus       948 ~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~-rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen  948 TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVS-RTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred             chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhh-ccccchhhhheeeecCccccccccceEEEEee
Confidence            466778889999999999999999999987543       3555665 9999999999999987762     26899999


Q ss_pred             ecCCCCCCceeEEEEEeCccccc
Q 046962           73 DSDTVSQDDFVGEAIIPLHSVFE   95 (161)
Q Consensus        73 ~~~~~~~d~~iG~~~~~l~~l~~   95 (161)
                      |++-...++|-|++.+.|.++..
T Consensus      1027 DHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             ccceecccccchHHHHhhCCCCC
Confidence            99998899999999999888754

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.75  E-value=2.7e-08  Score=79.52  Aligned_cols=100  Identities=21%  Similarity=0.443  Sum_probs=76.0

Q ss_pred             CCCCcEEEEEEcCee----eEEEEeeCCCCCCeeccEEEEEEeCC----------------CCeEEEEEEe-cCCCCCCc
Q 046962           23 SNMDPYVVLSCRTQE----KRSSVASGQGTTPNWNENFVFTISEG----------------TTALKLKIMD-SDTVSQDD   81 (161)
Q Consensus        23 ~~~dp~v~i~~~~~~----~~t~~~~~~~~~P~w~e~~~~~~~~~----------------~~~l~i~v~~-~~~~~~d~   81 (161)
                      +.+|||+.+......    .+|...+ ++.+|.|+|.|.|.+...                -..|++++|+ ++....+.
T Consensus       149 ~~~dp~~~v~~~g~~~~~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~  227 (800)
T KOG2059|consen  149 GQCDPFARVTLCGPSKLKEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV  227 (800)
T ss_pred             CCCCcceEEeecccchhhccccceee-eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence            559999999875433    3555655 899999999999987654                1268899999 45555689


Q ss_pred             eeEEEEEeCccccccCCccceeEEeec--------CCeeceEEEEEEEEEe
Q 046962           82 FVGEAIIPLHSVFEAGNVPQQAYNVVK--------DKKFQGEVRVGLTFKP  124 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~l~~--------~~~~~G~i~l~l~~~~  124 (161)
                      |+|++.+++..+... .....||.|+.        .+...|.+++++.|.-
T Consensus       228 FlGevrv~v~~~~~~-s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~  277 (800)
T KOG2059|consen  228 FLGEVRVPVDVLRQK-SSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE  277 (800)
T ss_pred             hceeEEeehhhhhhc-cCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence            999999999988743 33458999972        2346789999999973

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.52  E-value=6.5e-08  Score=79.84  Aligned_cols=89  Identities=25%  Similarity=0.272  Sum_probs=75.9

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeE-EEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEecCCCCCCc
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKR-SSVASGQGTTPNWNENFVFTISEGT-TALKLKIMDSDTVSQDD   81 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~-t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~~~~~~~d~   81 (161)
                      ..++|++++|.+|...|..|.+|||+.+.+++.... ......+++||+|.+.|++...-+. ..+.++||+++..++|+
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~  692 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDE  692 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccc
Confidence            457799999999999999999999999999877643 2333349999999999998877663 57899999999999999


Q ss_pred             eeEEEEEeCcc
Q 046962           82 FVGEAIIPLHS   92 (161)
Q Consensus        82 ~iG~~~~~l~~   92 (161)
                      .||+..+.|++
T Consensus       693 ~iget~iDLEn  703 (1105)
T KOG1326|consen  693 KIGETTIDLEN  703 (1105)
T ss_pred             hhhceehhhhh
Confidence            99999998875

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.50  E-value=2.8e-07  Score=59.40  Aligned_cols=100  Identities=21%  Similarity=0.341  Sum_probs=72.4

Q ss_pred             EEEEEEeecCCCCCCC-------------CCCCCcEEEEEEc---Ceee-EEEEeeCCCCCCeeccEEEEEEeC------
Q 046962            6 LEVLLVCAKGLQDTDF-------------LSNMDPYVVLSCR---TQEK-RSSVASGQGTTPNWNENFVFTISE------   62 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~-------------~~~~dp~v~i~~~---~~~~-~t~~~~~~~~~P~w~e~~~~~~~~------   62 (161)
                      |.|.|++|.+|+....             .-..++|+.+.+.   +... +|+.+. ++.-|.|+.+++|+++-      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVA-rSFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVA-RSFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchh-hhcCCCccceEEEecccEEEcCC
Confidence            4678888888876310             0136899999853   3333 455555 99999999999998651      


Q ss_pred             --C--------CCeEEEEEEecCCC----------CCCceeEEEEEeCccccccCCccceeEEe
Q 046962           63 --G--------TTALKLKIMDSDTV----------SQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        63 --~--------~~~l~i~v~~~~~~----------~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                        .        ...+.++||+...-          .+|-++|.+.+|+.+|.........||.+
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence              1        23689999996532          35568999999999998877767789864

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.44  E-value=2.6e-07  Score=77.72  Aligned_cols=102  Identities=25%  Similarity=0.383  Sum_probs=80.2

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe----ee-EEEEeeCCCCCCeeccEEEEEE-eCC---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ----EK-RSSVASGQGTTPNWNENFVFTI-SEG---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~----~~-~t~~~~~~~~~P~w~e~~~~~~-~~~---~~~l~i~v~~   73 (161)
                      .|+|.|-|..+++|+-......+||||+.++...    .+ +|++++ ++.+|.|||.....- ..+   .+.|.++||+
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvr-kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVR-KTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccc-ccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            4789999999999977776678999999999632    23 355555 999999999988762 222   3589999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      ......+.++|.+.++|.++....+. ..||.|
T Consensus      1602 ~~~~~en~~lg~v~i~L~~~~l~kE~-~~Wy~l 1633 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKES-VGWYNL 1633 (1639)
T ss_pred             ccceeeeeeeeeeecchhhcchhhhh-cceeec
Confidence            99888888999999999887664332 379987

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=98.33  E-value=1.3e-06  Score=64.27  Aligned_cols=116  Identities=16%  Similarity=0.144  Sum_probs=86.2

Q ss_pred             CeEEEEEEEeecCCCCCCC--CCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCC
Q 046962            3 KGTLEVLLVCAKGLQDTDF--LSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQD   80 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~--~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d   80 (161)
                      .|.|.+++..+++|+....  ....+.||.+.++.+...++.++.....-.|.|+|..++.+. ..+.+-||.|+...++
T Consensus        50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq~RH  128 (442)
T KOG1452|consen   50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQRRH  128 (442)
T ss_pred             cceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCchhhc
Confidence            5889999999999987654  345789999999988887777765666778899999998866 7899999999987788


Q ss_pred             ceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEE
Q 046962           81 DFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFK  123 (161)
Q Consensus        81 ~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~  123 (161)
                      +++-..-+.+..+............|    +++|++.+.+.+.
T Consensus       129 KLC~~g~l~~~~v~rqspd~~~Al~l----ePrgq~~~r~~~~  167 (442)
T KOG1452|consen  129 KLCHLGLLEAFVVDRQSPDRVVALYL----EPRGQPPLRLPLA  167 (442)
T ss_pred             cccccchhhhhhhhhcCCcceeeeec----ccCCCCceecccC
Confidence            87655555555555543322122333    6788888887765

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.16  E-value=4.4e-07  Score=75.15  Aligned_cols=113  Identities=17%  Similarity=0.259  Sum_probs=87.7

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEE---EeCC------C-CeEEEEEEecC
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFT---ISEG------T-TALKLKIMDSD   75 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~---~~~~------~-~~l~i~v~~~~   75 (161)
                      ++++|.+|+.|...+..+.+|||+.+.+.++.+.|.++. .+++|.|+.+..|.   +...      + ..+.+++||.+
T Consensus       208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d  286 (1105)
T KOG1326|consen  208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD  286 (1105)
T ss_pred             hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence            345567888999888889999999999999998888887 99999999988875   2211      1 36789999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEE
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLT  121 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~  121 (161)
                      ..+.++|+|+......-+..  .....|+.+.......|.+.++..
T Consensus       287 r~g~~ef~gr~~~~p~V~~~--~p~lkw~p~~rg~~l~gd~l~a~e  330 (1105)
T KOG1326|consen  287 RSGINEFKGRKKQRPYVMVQ--CPALKWVPTMRGAFLDGDVLIAAE  330 (1105)
T ss_pred             hhchHHhhcccccceEEEec--CCccceEEeecccccccchhHHHH
Confidence            99999999998776555444  223578888877777777665553

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=1.7e-06  Score=64.95  Aligned_cols=104  Identities=22%  Similarity=0.243  Sum_probs=84.3

Q ss_pred             CeEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcCeee-----EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEe-cC
Q 046962            3 KGTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRTQEK-----RSSVASGQGTTPNWNENFVFTISEGTTALKLKIMD-SD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~~~~-----~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~-~~   75 (161)
                      .|.+.|.|++|++|..+... ..+.||+.|++.....     +|+... ++.+|.+.....|.-..+...|.++||. ..
T Consensus       268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~-kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg  346 (405)
T KOG2060|consen  268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSAR-KTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG  346 (405)
T ss_pred             cCceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccccc-ccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence            47899999999999887543 3689999999865432     344554 8889988888888888887899999995 56


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .+.++.|+|.+++-+.+|.........||+|.
T Consensus       347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf  378 (405)
T KOG2060|consen  347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF  378 (405)
T ss_pred             ccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence            77788999999999999988765667899996

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=6.1e-06  Score=61.09  Aligned_cols=86  Identities=22%  Similarity=0.362  Sum_probs=68.9

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCC
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDT   76 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~   76 (161)
                      .-+.|++++|..|...|..+.+|||+...+..    .-++.+-..+.+.+|.|++.|.+.+...   ...+.|.||+.+.
T Consensus       233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~  312 (362)
T KOG1013|consen  233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDI  312 (362)
T ss_pred             CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCC
Confidence            45889999999999999999999999998852    1223444455999999999999998776   3489999999998


Q ss_pred             CCCCceeEEEEEe
Q 046962           77 VSQDDFVGEAIIP   89 (161)
Q Consensus        77 ~~~d~~iG~~~~~   89 (161)
                      ....+++|-....
T Consensus       313 G~s~d~~GG~~~g  325 (362)
T KOG1013|consen  313 GKSNDSIGGSMLG  325 (362)
T ss_pred             CcCccCCCccccc
Confidence            7777888765543

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=6.9e-07  Score=65.94  Aligned_cols=124  Identities=20%  Similarity=0.302  Sum_probs=89.9

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEec
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDS   74 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~   74 (161)
                      .++..+|.+|++|+..+..+..|||+...+..-     ..++.+.. +++||.|+|.....--..    ...+.+.|++.
T Consensus        93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn  171 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN  171 (362)
T ss_pred             hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchhhhhhhheeeccC
Confidence            467899999999999999999999999988532     24555665 899999998776553222    24678999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccc-eeEEee--------cCCeeceEEEEEEEEEeCCCC
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQ-QAYNVV--------KDKKFQGEVRVGLTFKPEGGH  128 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~-~~~~l~--------~~~~~~G~i~l~l~~~~~~~~  128 (161)
                      +.+.+..++|+..+++..|........ .|+...        .+.+.+|.|.+++.|......
T Consensus       172 ~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~  234 (362)
T KOG1013|consen  172 DKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPG  234 (362)
T ss_pred             cccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCc
Confidence            999899999999988877765332111 222111        123678999999998765554

>PLN02964 phosphatidylserine decarboxylase

Probab=98.01  E-value=1.5e-05  Score=64.92  Aligned_cols=85  Identities=18%  Similarity=0.333  Sum_probs=68.7

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEE-EEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEEEEecCCCCCCc
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYV-VLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLKIMDSDTVSQDD   81 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v-~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~v~~~~~~~~d~   81 (161)
                      |.+.|++++|+    ++   ..|+|+ .+.++.+.++|.... .+.+|+||+...|.+...+. ...|.|||++.+.+++
T Consensus        54 ~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~  125 (644)
T PLN02964         54 GIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSD-STDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT  125 (644)
T ss_pred             CeEEEEeehhh----hc---cCCcEEEEEEecceeeeecccc-ccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence            66778888887    22   246665 456778888888887 99999999988888877754 4689999999999999


Q ss_pred             eeEEEEEeCcccccc
Q 046962           82 FVGEAIIPLHSVFEA   96 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~   96 (161)
                      ++|.+.++|.++...
T Consensus       126 lv~~~e~~~t~f~~k  140 (644)
T PLN02964        126 LVGYCELDLFDFVTQ  140 (644)
T ss_pred             hhhheeecHhhccHH
Confidence            999999988887664

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.97  E-value=8.4e-06  Score=49.18  Aligned_cols=88  Identities=18%  Similarity=0.233  Sum_probs=61.3

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEE----EEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEecCCCC
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVL----SCRTQEKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMDSDTVS   78 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i----~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~~~~~~   78 (161)
                      +.|+++.|+||.-...-+ -+|-+-|    .+.+.-..++.++.+..||.|+|+|.|.+...+   -.|-|.|++  .+.
T Consensus         1 iwitv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~   77 (103)
T cd08684           1 IWITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTP   77 (103)
T ss_pred             CEEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCC
Confidence            368999999986554322 2333333    233433344555559999999999999875542   278889988  556


Q ss_pred             CCceeEEEEEeCcccccc
Q 046962           79 QDDFVGEAIIPLHSVFEA   96 (161)
Q Consensus        79 ~d~~iG~~~~~l~~l~~~   96 (161)
                      +.+.||.+.+.++++-.+
T Consensus        78 RKe~iG~~sL~l~s~gee   95 (103)
T cd08684          78 RKRTIGECSLSLRTLSTQ   95 (103)
T ss_pred             ccceeeEEEeecccCCHH
Confidence            788999999999988664

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=9.5e-05  Score=59.64  Aligned_cols=101  Identities=23%  Similarity=0.283  Sum_probs=77.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcC------eeeEEEEeeCCCCCCeeccEEEEEEeCCC----CeEEEEEEec
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT------QEKRSSVASGQGTTPNWNENFVFTISEGT----TALKLKIMDS   74 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~~~~----~~l~i~v~~~   74 (161)
                      +++|+|+.|++|+=.. .+.-.||+.+.+..      +++-++..+.++-.|.+||+|.|-+.+.+    ..|.+.|-|+
T Consensus      1126 kvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred             eEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence            6789999999986443 46778999998742      22234444457778999999999987763    3788888887


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .-.+.|..+|.+.+.|.++...+. ...|+.|-
T Consensus      1205 CFAReDRvvGl~VlqL~~va~kGS-~a~W~pLg 1236 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGS-CACWVPLG 1236 (1283)
T ss_pred             eeecccceeeeeeeehhhHhhcCc-eeEeeecc
Confidence            766678899999999999988744 56899885

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=97.82  E-value=0.0025  Score=42.28  Aligned_cols=121  Identities=17%  Similarity=0.207  Sum_probs=79.3

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCee---eEEEEeeCCCCCCeeccEEEEEEeCC---------CCeEEEEE
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE---KRSSVASGQGTTPNWNENFVFTISEG---------TTALKLKI   71 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~---~~t~~~~~~~~~P~w~e~~~~~~~~~---------~~~l~i~v   71 (161)
                      -.+.|.|.+..+++.    .....++.+..++..   ..+....-.+-.-.|+++|.+.+...         ...+.|.|
T Consensus         7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v   82 (143)
T PF10358_consen    7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV   82 (143)
T ss_pred             EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence            357788899988876    234455666555543   23333332444579999998875322         23688999


Q ss_pred             EecCCCCCCceeEEEEEeCccccccC-CccceeEEeecCCeeceEEEEEEEEEeCCCC
Q 046962           72 MDSDTVSQDDFVGEAIIPLHSVFEAG-NVPQQAYNVVKDKKFQGEVRVGLTFKPEGGH  128 (161)
Q Consensus        72 ~~~~~~~~d~~iG~~~~~l~~l~~~~-~~~~~~~~l~~~~~~~G~i~l~l~~~~~~~~  128 (161)
                      +.....++...+|.+.+.|++..... ......+.|.........|.|+|.+.+..+.
T Consensus        83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~  140 (143)
T PF10358_consen   83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRED  140 (143)
T ss_pred             EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccC
Confidence            88753333368999999999998853 3333445554444667789999998876544

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.80  E-value=3.5e-05  Score=58.84  Aligned_cols=116  Identities=19%  Similarity=0.304  Sum_probs=82.5

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEEEeCC------------CCeEE
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEG------------TTALK   68 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~------------~~~l~   68 (161)
                      |.+.|+++.+++...-.-..|.|+.+.+.     ....+|.+++ .+.+|.|++.|-+.+...            ...+.
T Consensus       369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k  447 (523)
T KOG3837|consen  369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK  447 (523)
T ss_pred             hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceee-CCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence            45666777766554423346788888764     2233456666 999999999999998762            23689


Q ss_pred             EEEEecCCC-CCCceeEEEEEeCccccccCCccceeEEeec-CCeeceEEEEEEEEE
Q 046962           69 LKIMDSDTV-SQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK-DKKFQGEVRVGLTFK  123 (161)
Q Consensus        69 i~v~~~~~~-~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~-~~~~~G~i~l~l~~~  123 (161)
                      |++|+...+ ..|.++|.+.+.|.-|.....+. ..+.|.. ....-|.|.+.+.+-
T Consensus       448 feifhkggf~rSdkl~gt~nikle~Len~cei~-e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEIC-EYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             EEEeeccccccccceeceeeeeehhhhcccchh-hceeccccccccCCeeEEEEEEe
Confidence            999998754 57889999999999888766653 3466653 344567888888865

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.73  E-value=0.00096  Score=44.91  Aligned_cols=122  Identities=19%  Similarity=0.297  Sum_probs=83.6

Q ss_pred             EEEEEEEeecCCCCCCCC--CCCCcE--EEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCC--------------Ce
Q 046962            5 TLEVLLVCAKGLQDTDFL--SNMDPY--VVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGT--------------TA   66 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~--~~~dp~--v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~--------------~~   66 (161)
                      -|.+.|..++-.......  +..+..  +-+.+.++++++..+. .+.+|.|++.|.|++....              ..
T Consensus        10 yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p   88 (156)
T PF15627_consen   10 YLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP   88 (156)
T ss_pred             EEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence            367777777643322110  233334  4445678888888887 9999999999999987652              36


Q ss_pred             EEEEEEecCCCCCCceeEEEEEeCccccccCCcc-ceeEEee----cCCeeceEEEEEEEEEeCCC
Q 046962           67 LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVP-QQAYNVV----KDKKFQGEVRVGLTFKPEGG  127 (161)
Q Consensus        67 l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~-~~~~~l~----~~~~~~G~i~l~l~~~~~~~  127 (161)
                      |.+.|-..+..+...++|...+........+... .....|.    ......|.|.|++.+.|...
T Consensus        89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~  154 (156)
T PF15627_consen   89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNLN  154 (156)
T ss_pred             eEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence            8888888887766789999888888777754421 1122333    22347899999999998754

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.70  E-value=0.0018  Score=49.17  Aligned_cols=119  Identities=13%  Similarity=0.264  Sum_probs=89.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC--------CCeEEEEEEecC-C
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG--------TTALKLKIMDSD-T   76 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------~~~l~i~v~~~~-~   76 (161)
                      +.|.|++|++++..   ..-...+...+++....|..+. .+..|.|+.+...+++..        ...|+++||..+ .
T Consensus         2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~   77 (340)
T PF12416_consen    2 IVLSILEGRNFPQR---PRHPIVVEAKFNGESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS   77 (340)
T ss_pred             EEEEEecccCCCCC---CCccEEEEEEeCCceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence            57899999999866   2455677778888888888776 888999998887776543        357999999988 5


Q ss_pred             CCCCceeEEEEEeCccc---ccc-CCccceeEEeecC----CeeceEEEEEEEEEeCCCC
Q 046962           77 VSQDDFVGEAIIPLHSV---FEA-GNVPQQAYNVVKD----KKFQGEVRVGLTFKPEGGH  128 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l---~~~-~~~~~~~~~l~~~----~~~~G~i~l~l~~~~~~~~  128 (161)
                      .+..+.+|.+.++|...   ... ......||.|...    ...+.+|.+.+........
T Consensus        78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~  137 (340)
T PF12416_consen   78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKP  137 (340)
T ss_pred             CCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccc
Confidence            56778999999998777   332 1356789999822    2345788888888766553

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.55  E-value=0.00032  Score=55.57  Aligned_cols=83  Identities=27%  Similarity=0.500  Sum_probs=63.0

Q ss_pred             EeecCCCCCCCCCCCCcEEEEEEc--Ce----eeEEEEeeCCCCCCeeccEEEEEE---eC--CCCeEEEEEEecCCCCC
Q 046962           11 VCAKGLQDTDFLSNMDPYVVLSCR--TQ----EKRSSVASGQGTTPNWNENFVFTI---SE--GTTALKLKIMDSDTVSQ   79 (161)
Q Consensus        11 ~~a~~L~~~~~~~~~dp~v~i~~~--~~----~~~t~~~~~~~~~P~w~e~~~~~~---~~--~~~~l~i~v~~~~~~~~   79 (161)
                      .+|.+|..++.++++|||..+.-.  ..    -.++.+++ ++++|.|. .|.+..   ..  ....+.+.+|+.+..++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~-n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVK-NTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceec-cCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCCC
Confidence            457888889999999999998653  21    23556665 99999996 444442   22  24688999999999999


Q ss_pred             CceeEEEEEeCccccc
Q 046962           80 DDFVGEAIIPLHSVFE   95 (161)
Q Consensus        80 d~~iG~~~~~l~~l~~   95 (161)
                      ++++|++..++..+..
T Consensus       221 ~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQE  236 (529)
T ss_pred             cCceeEecccHHHhcc
Confidence            9999999988888863

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=97.52  E-value=0.00022  Score=59.18  Aligned_cols=86  Identities=23%  Similarity=0.475  Sum_probs=65.7

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-------CeeeEEEEeeCCCCCCeec-cEEEEE-EeCCC-CeEEEEEE
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-------TQEKRSSVASGQGTTPNWN-ENFVFT-ISEGT-TALKLKIM   72 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-------~~~~~t~~~~~~~~~P~w~-e~~~~~-~~~~~-~~l~i~v~   72 (161)
                      .+++.|+|++|.-|..++    ..+||.|.+-       .+.++|+.+..+++||+|+ +.|.|. +.-+. ..|+|.||
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            468999999999987664    5589999873       2345677777799999998 667776 33332 38999999


Q ss_pred             ecCCCCCCceeEEEEEeCcccccc
Q 046962           73 DSDTVSQDDFVGEAIIPLHSVFEA   96 (161)
Q Consensus        73 ~~~~~~~d~~iG~~~~~l~~l~~~   96 (161)
                      +.+    .+++|+=.+|+..|..+
T Consensus       778 eEg----gK~ig~RIlpvd~l~~G  797 (1189)
T KOG1265|consen  778 EEG----GKFIGQRILPVDGLNAG  797 (1189)
T ss_pred             ccC----CceeeeeccchhcccCc
Confidence            977    45899988998877654

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=97.39  E-value=0.0034  Score=38.24  Aligned_cols=85  Identities=13%  Similarity=0.172  Sum_probs=63.6

Q ss_pred             CCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCccccccCCcccee
Q 046962           24 NMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQA  103 (161)
Q Consensus        24 ~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~  103 (161)
                      ..+..+.+.+++.....+.-+ ...+..|++.|.+++... +.|.|.||..|.   .++.|-..+.|++...+     ..
T Consensus         8 ~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRs-RELEI~VywrD~---RslCav~~lrLEd~~~~-----~~   77 (98)
T cd08687           8 CSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERS-RELEIAVYWRDW---RSLCAVKFLKLEDERHE-----VQ   77 (98)
T ss_pred             ccceEEEEEEcCeEEeecccc-ccccccccceeEEEeecc-cEEEEEEEEecc---hhhhhheeeEhhhhccc-----ce
Confidence            356678888888877666665 556899999999999876 899999998874   45788888999983221     22


Q ss_pred             EEeecCCeeceEEEEEEEE
Q 046962          104 YNVVKDKKFQGEVRVGLTF  122 (161)
Q Consensus       104 ~~l~~~~~~~G~i~l~l~~  122 (161)
                      ..+    .+.|.+...++|
T Consensus        78 ~~l----epqg~l~~ev~f   92 (98)
T cd08687          78 LDM----EPQLCLVAELTF   92 (98)
T ss_pred             ecc----ccccEEEEEEEe
Confidence            333    667888877777

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.22  E-value=0.02  Score=38.87  Aligned_cols=86  Identities=19%  Similarity=0.205  Sum_probs=59.1

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEE--cCeee----EEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEe
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQEK----RSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMD   73 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~~~----~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~   73 (161)
                      ..+.|+|+.+.++...+   ..+.|+.+.+  +.+..    .|+.+.  ..++.|+|...|++...    ...|.|++|+
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~   82 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICS   82 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEE
Confidence            46889999999987653   4677887755  33222    233332  35799999999987654    3489999998


Q ss_pred             cCCCC----CCceeEEEEEeCcccc
Q 046962           74 SDTVS----QDDFVGEAIIPLHSVF   94 (161)
Q Consensus        74 ~~~~~----~d~~iG~~~~~l~~l~   94 (161)
                      .....    ....+|.+.++|.+..
T Consensus        83 ~~~~~~~k~~~~~iG~~ni~LFd~~  107 (158)
T cd08398          83 VKGRKGAKEEHCPLAWGNINLFDYT  107 (158)
T ss_pred             EecccCCCCceEEEEEEEEEEECCC
Confidence            75321    2246999999988744

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.13  E-value=0.0051  Score=42.29  Aligned_cols=92  Identities=17%  Similarity=0.135  Sum_probs=62.4

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc--Ceee----EEEEe---eCCCCCCeeccEEEEEEeCC----CCeEEE
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR--TQEK----RSSVA---SGQGTTPNWNENFVFTISEG----TTALKL   69 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~--~~~~----~t~~~---~~~~~~P~w~e~~~~~~~~~----~~~l~i   69 (161)
                      ...+.|+|.++.+++........+.|+.+.+-  .+..    .|...   ..-...+.|+|.+.|++...    +..|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            34688999999999887755567888888653  3322    22211   10123567999999987543    348999


Q ss_pred             EEEecCCCC---------CCceeEEEEEeCcccc
Q 046962           70 KIMDSDTVS---------QDDFVGEAIIPLHSVF   94 (161)
Q Consensus        70 ~v~~~~~~~---------~d~~iG~~~~~l~~l~   94 (161)
                      ++|+.....         .+..||.+.++|-+..
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~  120 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR  120 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence            999876543         3568999999988754

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.07  E-value=0.012  Score=40.60  Aligned_cols=89  Identities=17%  Similarity=0.188  Sum_probs=59.0

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEE--cCeee----EEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEe
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQEK----RSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMD   73 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~~~----~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~   73 (161)
                      ..+.|+|..+.++...+  ...+.|+.+.+  +.+..    .|.... ....+.|+|.+.|++.-.    ...|.|+||+
T Consensus         8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~   84 (173)
T cd08693           8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPRMARLCFAIYE   84 (173)
T ss_pred             CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence            46889999999998622  34666777654  33322    233332 346799999999987544    2489999998


Q ss_pred             cCCCC----------------CCceeEEEEEeCccccc
Q 046962           74 SDTVS----------------QDDFVGEAIIPLHSVFE   95 (161)
Q Consensus        74 ~~~~~----------------~d~~iG~~~~~l~~l~~   95 (161)
                      .....                .+..||.+.++|-+...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~  122 (173)
T cd08693          85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG  122 (173)
T ss_pred             ecccccccccccccccccccCcceEEEEEeEEEEcccc
Confidence            65321                24588988888877443

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.73  E-value=0.028  Score=37.94  Aligned_cols=91  Identities=19%  Similarity=0.197  Sum_probs=58.7

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEE--cCeee---EEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEec
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQEK---RSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDS   74 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~~~---~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~   74 (161)
                      ..++|++....++...+ ....+.|+.+.+  +.+..   .++.......++.|+|.+.|++...    +..|.|++|+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            35778888877765521 134566666654  23211   2232221336799999999986544    34899999997


Q ss_pred             CCCC--CCceeEEEEEeCccccc
Q 046962           75 DTVS--QDDFVGEAIIPLHSVFE   95 (161)
Q Consensus        75 ~~~~--~d~~iG~~~~~l~~l~~   95 (161)
                      ....  .+..||.+.++|-+...
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~~~  109 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDYKG  109 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcccC
Confidence            7543  46799999999987543

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.64  E-value=0.022  Score=38.74  Aligned_cols=70  Identities=20%  Similarity=0.268  Sum_probs=49.3

Q ss_pred             CCCCcEEEEEEc--Ceee----EEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEecCCCCCCceeEEEEEeCcc
Q 046962           23 SNMDPYVVLSCR--TQEK----RSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDSDTVSQDDFVGEAIIPLHS   92 (161)
Q Consensus        23 ~~~dp~v~i~~~--~~~~----~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~~~~~~d~~iG~~~~~l~~   92 (161)
                      ..++.||.+.+-  .+..    .|.... -+..+.|||...|++...    ...|.|+||+....++...+|.+.++|.+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            357778877653  2222    232222 455688999999997655    24899999998765567799999999987


Q ss_pred             c
Q 046962           93 V   93 (161)
Q Consensus        93 l   93 (161)
                      -
T Consensus       107 ~  107 (159)
T cd08397         107 K  107 (159)
T ss_pred             C
Confidence            5

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=96.56  E-value=0.036  Score=35.11  Aligned_cols=94  Identities=12%  Similarity=0.189  Sum_probs=50.6

Q ss_pred             EEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC--------CCeEEEEEEecCCCCCCceeEEEEEeCccccccCC-
Q 046962           28 YVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG--------TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGN-   98 (161)
Q Consensus        28 ~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~-   98 (161)
                      ||.+.+-.-...++.+. .+.+|.++-+-.+.+...        ...+.++++..-.. ....+|.+++++..+....+ 
T Consensus         2 Fct~dFydfEtq~Tpvv-~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~~~   79 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVV-RGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESNGE   79 (107)
T ss_dssp             EEEE-STT---EE---E-ESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--S-
T ss_pred             EEEEEeeceeeecccce-eCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCCCc
Confidence            67777655554555444 588999998878877665        35799999987743 46789999999999986443 


Q ss_pred             ccceeEEee-cCCeeceEEEEEEEEE
Q 046962           99 VPQQAYNVV-KDKKFQGEVRVGLTFK  123 (161)
Q Consensus        99 ~~~~~~~l~-~~~~~~G~i~l~l~~~  123 (161)
                      .......|. .++...|.|...++..
T Consensus        80 ~i~~~~~l~g~~~~~~g~l~y~~rl~  105 (107)
T PF11618_consen   80 RIHGSATLVGVSGEDFGTLEYWIRLR  105 (107)
T ss_dssp             -EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred             eEEEEEEEeccCCCeEEEEEEEEEec
Confidence            222334444 4555889998888765

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.01  E-value=0.3  Score=33.85  Aligned_cols=70  Identities=17%  Similarity=0.152  Sum_probs=41.4

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEE--cCee---eEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEec
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQE---KRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDS   74 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~~---~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~   74 (161)
                      ..++|+|..+.. +..+.......||.+.+  +...   .+|+... .+.++.|+|.+.|++...    ...|.|+||+.
T Consensus        10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~   87 (178)
T cd08399          10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG   87 (178)
T ss_pred             CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccC-CCCCccccccEECccccccCChhhEEEEEEEEE
Confidence            357788887763 33322223345555533  2221   1333332 456799999999987654    24899999986


Q ss_pred             C
Q 046962           75 D   75 (161)
Q Consensus        75 ~   75 (161)
                      .
T Consensus        88 ~   88 (178)
T cd08399          88 K   88 (178)
T ss_pred             e
Confidence            4

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=94.47  E-value=0.17  Score=40.66  Aligned_cols=57  Identities=23%  Similarity=0.406  Sum_probs=45.0

Q ss_pred             EEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCC----CCCceeEEEEEeCcccccc
Q 046962           39 RSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTV----SQDDFVGEAIIPLHSVFEA   96 (161)
Q Consensus        39 ~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~----~~d~~iG~~~~~l~~l~~~   96 (161)
                      ++.++. +.+||.|-+.|.+....+ .+.+++.+++-+..    ..++|+|+..+.+..+...
T Consensus        44 rte~i~-~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~  105 (529)
T KOG1327|consen   44 RTEVIR-NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS  105 (529)
T ss_pred             ceeeee-ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence            566776 999999999888876655 35889999986633    4567999999999887764

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.41  E-value=0.019  Score=46.96  Aligned_cols=100  Identities=9%  Similarity=0.062  Sum_probs=67.1

Q ss_pred             CCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccce
Q 046962           23 SNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQ  102 (161)
Q Consensus        23 ~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~  102 (161)
                      ...++|+.|.+..........++.+..|.|+++|...+... ..+.|.|+.......+.+...+.+-.+++.........
T Consensus        26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~  104 (694)
T KOG0694|consen   26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRL  104 (694)
T ss_pred             hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-CceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhh
Confidence            34688999988766554444455899999999999996665 78889999877555555555555544454442222345


Q ss_pred             eEEeecCCeeceEEEEEEEEEeCCC
Q 046962          103 AYNVVKDKKFQGEVRVGLTFKPEGG  127 (161)
Q Consensus       103 ~~~l~~~~~~~G~i~l~l~~~~~~~  127 (161)
                      |..+    +..|++...+.+.-...
T Consensus       105 w~~~----~~~g~~~~~~~~~~~~~  125 (694)
T KOG0694|consen  105 WVLI----EELGTLLKPAALTGTLE  125 (694)
T ss_pred             cccc----ccccceeeeecccCcCC
Confidence            6655    56688888888765444

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=94.31  E-value=0.83  Score=31.32  Aligned_cols=71  Identities=18%  Similarity=0.271  Sum_probs=52.9

Q ss_pred             CCCcEEEEEEcCeeeEEEEeeC--CCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCccccc
Q 046962           24 NMDPYVVLSCRTQEKRSSVASG--QGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFE   95 (161)
Q Consensus        24 ~~dp~v~i~~~~~~~~t~~~~~--~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~   95 (161)
                      ...-|+++.+.++...++..+.  ....-.|++.|.+.+..-=..|.++||.... ..+.+|+++.+|+-....
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~  108 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV  108 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence            4677999999888776555442  2333466788888886644699999999987 578899999999766544

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=94.18  E-value=0.77  Score=30.43  Aligned_cols=47  Identities=21%  Similarity=0.384  Sum_probs=36.8

Q ss_pred             CCCeeccEEEEEEeCC----CCeEEEEEEecCCCCCC----ceeEEEEEeCcccc
Q 046962           48 TTPNWNENFVFTISEG----TTALKLKIMDSDTVSQD----DFVGEAIIPLHSVF   94 (161)
Q Consensus        48 ~~P~w~e~~~~~~~~~----~~~l~i~v~~~~~~~~d----~~iG~~~~~l~~l~   94 (161)
                      ..+.|+|.+.|++.-.    ...|.|+||........    ..||.+.++|-+..
T Consensus        32 ~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~   86 (142)
T PF00792_consen   32 SRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR   86 (142)
T ss_dssp             SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred             ccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence            6899999999997543    34899999998765444    68999999998863

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=94.15  E-value=0.52  Score=32.73  Aligned_cols=52  Identities=15%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             EEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCCC-CC--ceeEEEEEeCcc
Q 046962           41 SVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTVS-QD--DFVGEAIIPLHS   92 (161)
Q Consensus        41 ~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~~-~d--~~iG~~~~~l~~   92 (161)
                      +.+...+.+|.|+|+|.+.+...   ...|.|++++...-. ++  ..+|-+.+||.+
T Consensus        63 S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   63 SSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             ----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            33444678999999999998776   348999999865321 22  699999999987

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=93.19  E-value=0.55  Score=32.85  Aligned_cols=52  Identities=25%  Similarity=0.466  Sum_probs=38.1

Q ss_pred             EEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCCC-C-CceeEEEEEeCc
Q 046962           39 RSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTVS-Q-DDFVGEAIIPLH   91 (161)
Q Consensus        39 ~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~~-~-d~~iG~~~~~l~   91 (161)
                      ++.+.. ...+|.|+|++.+.+...   +..|.|++++..... + ...+|-+++||-
T Consensus        56 ~S~V~y-H~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          56 RSFVLY-HNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             EEEEEE-cCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            444444 788999999999998765   358999888854221 2 267999999884

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=92.64  E-value=1.6  Score=30.71  Aligned_cols=52  Identities=17%  Similarity=0.311  Sum_probs=37.9

Q ss_pred             EEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCC----CCCceeEEEEEeCc
Q 046962           39 RSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTV----SQDDFVGEAIIPLH   91 (161)
Q Consensus        39 ~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~----~~d~~iG~~~~~l~   91 (161)
                      ++.+.. ...+|.|+|++.+.+...   +..|.|++++....    .....+|-+++||-
T Consensus        56 ~S~V~Y-h~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          56 KSVIYY-QVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             EEEEEe-ecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            344443 788999999999998765   45899999885421    12357999999885

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=91.54  E-value=5.2  Score=30.81  Aligned_cols=97  Identities=10%  Similarity=0.179  Sum_probs=64.5

Q ss_pred             CCCcEEEEEEcCeeeEEEEeeCCCCCC--eeccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCcc-ccccCCcc
Q 046962           24 NMDPYVVLSCRTQEKRSSVASGQGTTP--NWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHS-VFEAGNVP  100 (161)
Q Consensus        24 ~~dp~v~i~~~~~~~~t~~~~~~~~~P--~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~-l~~~~~~~  100 (161)
                      ....|+.++.++...+|..+. .+..-  .-++.....+..-...|.+.+|...-. +..-||.+.+.+.. +....-..
T Consensus        73 ~khiyIef~~Gr~d~TT~~Ip-TsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~dIIdk~FPK  150 (508)
T PTZ00447         73 YKHIYIIFSTDKYDFTTDEIP-TNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINASVISKSFPK  150 (508)
T ss_pred             ceeEEEEEEcCceEEEccccc-cCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccHHHHhccCCc
Confidence            356788888877777665443 12121  223444444444346899999988755 45679998888754 55444445


Q ss_pred             ceeEEeecCCeeceEEEEEEEE
Q 046962          101 QQAYNVVKDKKFQGEVRVGLTF  122 (161)
Q Consensus       101 ~~~~~l~~~~~~~G~i~l~l~~  122 (161)
                      ..||.+..++...++|.+|+.-
T Consensus       151 nkWy~c~kDGq~~cRIqLSFhK  172 (508)
T PTZ00447        151 NEWFVCFKDGQEICKVQMSFYK  172 (508)
T ss_pred             cceEEEecCCceeeeEEEEehh
Confidence            6899999889999999888763

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=91.48  E-value=1.2  Score=30.82  Aligned_cols=52  Identities=17%  Similarity=0.308  Sum_probs=38.5

Q ss_pred             EEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCC-----CCCceeEEEEEeCcc
Q 046962           40 SSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTV-----SQDDFVGEAIIPLHS   92 (161)
Q Consensus        40 t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~-----~~d~~iG~~~~~l~~   92 (161)
                      ++++. ...+|.|++++.+.+...   ...|.|++++...-     .....+|-+.+||-+
T Consensus        56 ~sv~~-~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          56 TSVVY-YHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEE-cCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            44444 347999999999988654   34899999986622     345689999999875

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=90.28  E-value=3  Score=25.87  Aligned_cols=69  Identities=19%  Similarity=0.184  Sum_probs=41.4

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEE--cCeee----EEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEecC
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQEK----RSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDSD   75 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~~~----~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~~   75 (161)
                      +.+.+....++.........+.|+.+.+  +++..    .|. .......+.|||...|++.-.    ...|.|++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~-~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTS-YKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEec-ccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            4455666666554433223477888765  33322    232 222455689999999886544    248999999864

Outlier of C2 family.

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=89.22  E-value=3  Score=28.94  Aligned_cols=52  Identities=13%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             EEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCC------CCCceeEEEEEeCcc
Q 046962           40 SSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTV------SQDDFVGEAIIPLHS   92 (161)
Q Consensus        40 t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~------~~d~~iG~~~~~l~~   92 (161)
                      +.+.. .+.+|.|.+++.+.+...   ...|.|++|+.+--      .....+|-+.+||-.
T Consensus        58 S~V~y-Hnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          58 TAVTY-HNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             EEEEE-eCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            44444 788999999999988765   34899999984421      123568888888753

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=88.49  E-value=4.1  Score=28.45  Aligned_cols=53  Identities=15%  Similarity=0.253  Sum_probs=37.8

Q ss_pred             EEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecC--CCC-------CCceeEEEEEeCcc
Q 046962           39 RSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSD--TVS-------QDDFVGEAIIPLHS   92 (161)
Q Consensus        39 ~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~--~~~-------~d~~iG~~~~~l~~   92 (161)
                      .+.+.. .+.+|.|.+++.+.+...   ...|.|++|+.+  ...       .+..+|-+++||-.
T Consensus        59 ~s~V~y-h~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          59 YAAVLH-HNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             EEEEEE-cCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            344554 778999999999987665   348999999865  111       23568888888765

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	161
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		3e-44
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		2e-08
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		7e-08
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		4e-06
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		7e-06
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		1e-05
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-05
1qas_A	622	1-Phosphatidylinositol-4,5-Bisphosphate Phosphodies		2e-04
1djg_A	624	Phosphoinositide-Specific Phospholipase C-Delta1 Fr		2e-04
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		4e-04
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		5e-04

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 99/123 (80%)
Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTIS 61
           P GTLEV+LV AKGL+D DFL+NMDPYV L+CRTQ+++S+VA G GTTP WNE F+FT+S
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67
Query: 62  EGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLT 121
           EGTT LK KI D D  ++DD VGEA IPL  VF  G++P  AYNVVKD++++GE+ V L+
Sbjct: 68  EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127
Query: 122 FKP 124
           FKP
Sbjct: 128 FKP 130

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 6   LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTT 65
           + + +VCA+GLQ  D   + DPYV +     +KR+    G    P W ENF F     + 
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYG-NLNPVWEENFHFECHNSSD 77
Query: 66  ALKLKIMDSD-----TVSQ------DDFVGEAIIPLHSV 93
            +K++++D D      V Q      DDF+G+ II + ++
Sbjct: 78  RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 6   LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT------PNWNENFVFT 59
           L V +V    L   D     DPYV LS    ++   +A  Q  T      P WNE F F 
Sbjct: 23  LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 60  ISEGTTALKLKIMDSDTVSQDDFVGEAIIPL 90
           ++     L  ++ D + +++DDF+G+  +PL
Sbjct: 83  VNPSNHRLLFEVFDENRLTRDDFLGQVDVPL 113

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYV--VLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
           + TL V ++ A+ L   DF    DP+V   L    + K  +    +   P+WNE F+F  
Sbjct: 25  ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF-- 82
Query: 61  SEG-------TTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            EG          L L+++D D  S++D +GE  IPL+ V
Sbjct: 83  -EGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 6   LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT------PNWNENFVFT 59
           + V ++   GL   D L   DPYV ++         + S Q  T      P WNE  +F 
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTL-YDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 60  ISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKD---------K 110
           +      L  ++ D + +++DDF+G+  +PL+ +       ++ Y   KD          
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYT-FKDFVLHPRSHKS 139
Query: 111 KFQGEVRVGLTFKP 124
           + +G +R+ +T+ P
Sbjct: 140 RVKGYLRLKMTYLP 153

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
           G L+V ++ A  L   DF    DP+ +L       ++     +   P WN+ F F I + 
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDI 71
Query: 64  TTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
              L++ + D D     DF+G+  IPL S+
Sbjct: 72  HDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 19/135 (14%)
Query: 6   LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGT-------TPNWNENFVF 58
           + V ++   GL   D L   DPYV ++    +  S + +   T        P WNE  +F
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTL--YDPMSGILTSVQTKTIKKSLNPKWNEEILF 67
Query: 59  TISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKD--------- 109
            +      +  ++ D + +++DDF+G+  +PL+ +       ++ Y   KD         
Sbjct: 68  RVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPY-TFKDFVLHPRSHK 126
Query: 110 KKFQGEVRVGLTFKP 124
            + +G +R+ +T+ P
Sbjct: 127 SRVKGYLRLKMTYLP 141

>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase Delta 1 Length = 622

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 23  SNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEGTTAL-KLKIMDSDT 76
           S +DP V++        T  ++++V +  G  P W+  F F ++    AL +  + D D+
Sbjct: 516 SIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDS 575
Query: 77  VSQDDFVGEAIIPLHSV 93
            S++DF+G++ IP +S+
Sbjct: 576 SSKNDFIGQSTIPWNSL 592

>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat Complexed With Lanthanum Length = 624

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 23  SNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEGTTAL-KLKIMDSDT 76
           S +DP V++        T  ++++V +  G  P W+  F F ++    AL +  + D D+
Sbjct: 518 SIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDS 577
Query: 77  VSQDDFVGEAIIPLHSV 93
            S++DF+G++ IP +S+
Sbjct: 578 SSKNDFIGQSTIPWNSL 594

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 7   EVLLVC---AKGLQDTDFLSNMDPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVFT 59
           EVL+V    AK L   D     DPYV L      +++ K+ +        P WNE F F 
Sbjct: 172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ 231
Query: 60  ISEGTT--ALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG 97
           + E      L ++I D D  S++DF+G     +  + +AG
Sbjct: 232 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 271

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 7   EVLLVC---AKGLQDTDFLSNMDPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVFT 59
           EVL+V    AK L   D     DPYV L      +++ K+ +        P WNE F F 
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 60  ISEGTTALKL--KIMDSDTVSQDDFVGEAIIPLHSVFEAG 97
           + E     +L  +I D D  S++DF+G     +  + +AG
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-50
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-25
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-25
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	7e-23
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-22
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	4e-22
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	6e-22
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-21
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	8e-19
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	3e-16
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	7e-16
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-12
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-15
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-12
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-15
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	7e-15
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-14
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-14
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	3e-14
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	4e-14
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	6e-14
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	7e-14
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-13
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-13
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	7e-13
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-12
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-12
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	2e-12
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	3e-12
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-12
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	3e-12
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-11
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	3e-11
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-11
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	4e-11
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-10
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	3e-10
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	5e-10
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	5e-10
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	1e-09
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-09
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-09
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	5e-08
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	4e-06
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	1e-05

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  156 bits (397), Expect = 3e-50
 Identities = 80/126 (63%), Positives = 100/126 (79%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
            P GTLEV+LV AKGL+D DFL+NMDPYV L+CRTQ+++S+VA G GTTP WNE F+FT+
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV 66

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
           SEGTT LK KI D D  ++DD VGEA IPL  VF  G++P  AYNVVKD++++GE+ V L
Sbjct: 67  SEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 126

Query: 121 TFKPEG 126
           +FKP G
Sbjct: 127 SFKPSG 132

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 94.2 bits (234), Expect = 3e-25
 Identities = 17/119 (14%), Positives = 47/119 (39%), Gaps = 4/119 (3%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE 62
           K  L++ ++ AK  ++        PYV ++   Q K++   +    +P W +     ++ 
Sbjct: 35  KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN-TNSPKWKQPLTVIVTP 93

Query: 63  GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEA--GNVPQQAYNVVKDKKFQGEVRVG 119
            +  L  ++    T+  D  +G A + ++   ++    + +    +      +    +G
Sbjct: 94  VSK-LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIG 151

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 93.0 bits (231), Expect = 3e-25
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 23/142 (16%)

Query: 1   MPKGTLEVLLVCAKGLQDTDF-----------LSNMDPYVVLSCRTQEKRSSVASGQGTT 49
           +  G L++ +  A  L+ T +              +DPY+ L+        +    +  +
Sbjct: 3   VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNS 62

Query: 50  PNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKD 109
           P W++ FV  +  G   ++L +     +  DDFV    I    + + G+          +
Sbjct: 63  PAWHDEFVTDVCNGRK-IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRH-------FE 114

Query: 110 KKF----QGEVRVGLTFKPEGG 127
                  +G+V V +      G
Sbjct: 115 DWIDLEPEGKVYVIIDLSGSSG 136

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 87.5 bits (217), Expect = 7e-23
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 15/137 (10%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT------PNWNEN 55
               + V ++   GL   D L   DPYV ++         + S Q  T      P WNE 
Sbjct: 18  NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLY-DPMNGVLTSVQTKTIKKSLNPKWNEE 76

Query: 56  FVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV--------V 107
            +F +      L  ++ D + +++DDF+G+  +PL+ +       ++ Y           
Sbjct: 77  ILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS 136

Query: 108 KDKKFQGEVRVGLTFKP 124
              + +G +R+ +T+ P
Sbjct: 137 HKSRVKGYLRLKMTYLP 153

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 87.0 bits (215), Expect = 1e-22
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 12/130 (9%)

Query: 4   GTLEVLLVCAKGLQDTDF----------LSNMDPYVVLSCRTQEKRSSVASGQGTTPNWN 53
           G L V +  A GLQ T +             +DPY+ +S        +    +   P +N
Sbjct: 29  GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88

Query: 54  ENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQ 113
           E F   +++G   L+L +     +  D FV    +    +             V  +  +
Sbjct: 89  EEFCANVTDGGH-LELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-E 146

Query: 114 GEVRVGLTFK 123
           G+V V +T  
Sbjct: 147 GKVFVVITLT 156

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 85.0 bits (211), Expect = 4e-22
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT-PNWNENFVFTI 60
             G L+V ++ A  L   DF    DP+ +L       ++          P WN+ F F I
Sbjct: 11  DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTV--YKNLNPEWNKVFTFPI 68

Query: 61  SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGL 120
            +    L++ + D D     DF+G+  IPL S+ +         N   ++ F+G + + +
Sbjct: 69  KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEM 128

Query: 121 TF 122
             
Sbjct: 129 DL 130

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 85.7 bits (212), Expect = 6e-22
 Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 15/140 (10%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT------PNWNEN 55
               + V ++   GL   D L   DPYV ++         + S Q  T      P WNE 
Sbjct: 6   DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLY-DPMSGILTSVQTKTIKKSLNPKWNEE 64

Query: 56  FVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV--------V 107
            +F +      +  ++ D + +++DDF+G+  +PL+ +       ++ Y           
Sbjct: 65  ILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS 124

Query: 108 KDKKFQGEVRVGLTFKPEGG 127
              + +G +R+ +T+ P+ G
Sbjct: 125 HKSRVKGYLRLKMTYLPKNG 144

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 82.8 bits (205), Expect = 3e-21
 Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 12/133 (9%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI--- 60
           G L V++  A  +  T F    DP V +  + ++K++     +   P WNE   F +   
Sbjct: 7   GMLRVIVESASNIPKTKFGK-PDPIVSVIFKDEKKKTKKVDNE-LNPVWNEILEFDLRGI 64

Query: 61  -SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK-----DKKFQG 114
             + +++L + + D +T+ Q+  +G A + L  +          Y ++       +    
Sbjct: 65  PLDFSSSLGIIVKDFETIGQNKLIGTATVALKDL-TGDQSRSLPYKLISLLNEKGQDTGA 123

Query: 115 EVRVGLTFKPEGG 127
            + + + + P  G
Sbjct: 124 TIDLVIGYDPPSG 136

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 76.8 bits (189), Expect = 8e-19
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 18/136 (13%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTIS 61
               + + +VCA+GLQ  D   + DPYV +     +KR+         P W ENF F   
Sbjct: 15  WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNLNPVWEENFHFECH 73

Query: 62  EGTTALKLKIMDSD-----------TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDK 110
             +  +K++++D D               DDF+G+ II + ++    +     YN+ K  
Sbjct: 74  NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMD---VWYNLDKRT 130

Query: 111 KF---QGEVRVGLTFK 123
                 G +R+ ++ +
Sbjct: 131 DKSAVSGAIRLHISVE 146

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 69.7 bits (171), Expect = 3e-16
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 6   LEVLLVCAKGLQDT---DFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFT 59
             V+++ A  +      D L   DPYV L   T     KR+   +     P WNE F F 
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND-INPVWNETFEFI 63

Query: 60  ISEGTTA-LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRV 118
           +       L++ +MD++ V  D+ +G A   + S+ + G   +  +   +  +   E+ +
Sbjct: 64  LDPNQENVLEITLMDANYV-MDETLGTATFTVSSM-KVGEKKEVPFIFNQVTEMVLEMSL 121

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 71.8 bits (176), Expect = 7e-16
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYV---VLSCRTQEKRSSVASGQGTTPNWNENFVF 58
               L V ++ A  L   D     DPYV   +L  + ++  + V       P +NE F F
Sbjct: 17  QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTF 75

Query: 59  TISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQA---YNVVKDKKF 112
            +         L + + D D  S+ D +GE  +P+++V       +         ++++ 
Sbjct: 76  KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEK 135

Query: 113 QGEVRVGLTFKPEGG 127
            G++   L + P  G
Sbjct: 136 LGDICFSLRYVPTAG 150

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC-----RTQEKRSSVASGQGTTPNWNENFVF 58
           G L V+++ AK L+  D     DPYV +       R ++K++++       P +NE+F F
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT-LNPYYNESFSF 208

Query: 59  TISEG---TTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            +         + + ++D D + ++D +G+  +  +S 
Sbjct: 209 EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 71.4 bits (175), Expect = 1e-15
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYV---VLSCRTQEKRSSVASGQGTTPNWNENFVF 58
               L V ++ A  L   D     DPYV   +L  R ++ ++ V       P +NE F F
Sbjct: 18  GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKT-LNPIFNETFQF 76

Query: 59  TISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQA----YNVVKDKK 111
           ++         L   + D D  S+ D +G+ ++            +           +K 
Sbjct: 77  SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKA 136

Query: 112 FQGEVRVGLTFKPEGG 127
             GE+   L + P  G
Sbjct: 137 DLGELNFSLCYLPTAG 152

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSC-----RTQEKRSSVASGQGTTPNWNENFV 57
            G L V ++ A  L+  D     DPYV  S      R +++++S+       P +NE  V
Sbjct: 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNT-LNPTYNEALV 209

Query: 58  FTISEG---TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG 97
           F ++        L + ++D D +  ++ +G   +   +    G
Sbjct: 210 FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 252

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 67.8 bits (166), Expect = 2e-15
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 6   LEVLLVCAKGLQDTDFLSNMDPYVVLS--CRTQEKRSSVASGQGTT--PNWNENFVFTIS 61
           + + ++CAK L   DF    DP+  +      Q   +        T  P WN+++   + 
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKN---TLDPKWNQHYDLYVG 63

Query: 62  EGTTALKLKIMDSDTVSQDD---FVGEAIIPLHSVFEAGNVPQQAYNVVK-----DKKFQ 113
           +  + + + + +   + +     F+G   +  +++    +   Q  ++ K         +
Sbjct: 64  KTDS-ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVR 122

Query: 114 GEVRVGLTFK 123
           G++ V L  +
Sbjct: 123 GQIVVSLQTR 132

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 66.6 bits (163), Expect = 7e-15
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYV---VLSCRTQEKRSSVASGQGTT-PNWNENFVF 58
              L V ++ A  L   D     DPYV   +L  + ++  + V   + T  P +NE F F
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH--RKTLNPVFNEQFTF 90

Query: 59  TISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            +     G   L + + D D  S+ D +GE  +P+++V
Sbjct: 91  KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 10/114 (8%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYV---VLSCRTQEK---RSSVASGQGTTPNWNENF 56
                +L++    L       +    +   VL C        R+        T  +NE F
Sbjct: 42  NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDAS-DTLVFNEVF 100

Query: 57  VFTISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107
             ++S        L++ +  +D    ++ +G A I L  V  +G    + YN++
Sbjct: 101 WVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 65.1 bits (159), Expect = 3e-14
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYV---VLSCRTQEKRSSVASGQGTT-PNWNENFVF 58
              L V ++ A  L   D     DPYV   +L  + ++  + V   + T  P +NE F F
Sbjct: 41  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH--RKTLNPVFNEQFTF 98

Query: 59  TISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            +     G   L + + D D  S+ D +GE  +P+++V
Sbjct: 99  KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 65.1 bits (159), Expect = 3e-14
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 12/101 (11%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVL-----SCRTQEKRSSVASGQGTT-PNWNENF 56
              L+  ++ AKGL+  D     DPYV L     + ++ + R+     + T  P WNE  
Sbjct: 28  NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTL--RNTRNPVWNETL 85

Query: 57  VF-TISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            +  I+E       L++ + D D    ++F+GE    L  +
Sbjct: 86  QYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 63.8 bits (155), Expect = 6e-14
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 4  GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
          G + +L V  K  +        + YV L  + Q  +S+  + +G+ P+W ++F+F I+  
Sbjct: 2  GVMSLLCVGVKKAKFDGAQEKFNTYVTL--KVQNVKSTTIAVRGSQPSWEQDFMFEINRL 59

Query: 64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGN 98
             L +++ +   +  D  VG   IPL ++ ++  
Sbjct: 60 DLGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNE 93

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 63.9 bits (156), Expect = 7e-14
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSC-----RTQEKRSSVASGQGTT-PNWNENF 56
           +  L V++  AK L   D     DPYV L          ++++     + +  P WNE F
Sbjct: 30  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI--KCSLNPEWNETF 87

Query: 57  VFTISEG--TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG 97
            F + E      L ++I D D  S++DF+G     +  + +AG
Sbjct: 88  RFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 130

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 66.1 bits (160), Expect = 1e-13
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 1   MPKGTLEVLLVCAKGLQD---TDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNE 54
                  V+++ A  +      D L   DPYV L   T     KR+   +     P WNE
Sbjct: 15  QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNE 73

Query: 55  NFVFTI-SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            F F +       L++ +MD++ V  D+ +G A   + S+
Sbjct: 74  TFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSM 112

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 62.7 bits (153), Expect = 2e-13
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSC---RTQEKRSSVASGQGTT-PNWNENFVF 58
           + TL V ++ A+ L   DF    DP+V +     +  +  + V   +    P+WNE F+F
Sbjct: 25  ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVK--RKNLNPHWNETFLF 82

Query: 59  TISE----GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
                       L L+++D D  S++D +GE  IPL+ V
Sbjct: 83  EGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 61.2 bits (149), Expect = 7e-13
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 11/100 (11%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNM-DPYVVLSC---RTQEKRSSVASGQGTT-PNWNENFV 57
           +    V +  A+GL   D  S   DPY+ ++    +  + ++ V   + T  P ++E F 
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVL--RKTLDPAFDETFT 78

Query: 58  F-TISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
           F  I        AL   I+  D  S+DD +GE +IPL  +
Sbjct: 79  FYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC-----RTQEKRSSVASGQGTTPNWNENFVF 58
            ++ V ++ A+ L+  D     DPYV +       R ++K++         P +NE+F F
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRN-LNPIFNESFAF 74

Query: 59  TISEG---TTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            I       T + + +MD D +S++D +G+  +   S 
Sbjct: 75  DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG 112

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 60.1 bits (146), Expect = 2e-12
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNM-DPYVVLS-----CRTQEKRSSVASGQGTT-PNWNEN 55
             +L V +     L   D      +PYV         R  ++++S+   + T  P ++E 
Sbjct: 22  TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK--RDTVNPLYDET 79

Query: 56  FVFTISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
             + I E       L+  +       ++ F+GEA I + S 
Sbjct: 80  LRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSW 120

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 60.1 bits (146), Expect = 2e-12
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 16/105 (15%)

Query: 3   KGTLEVLLVCAKGL-------QDTDFLSNMDPYV---VLSCRTQEKRSSVASGQGTT-PN 51
              L V ++ A+ L            +++ +PYV   +L  +   K++ V   + T  P 
Sbjct: 25  HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVK--RKTQKPV 82

Query: 52  WNENFVFTISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
           + E + F I         L L ++D D  S+   +G+  +PL  V
Sbjct: 83  FEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 59.7 bits (145), Expect = 3e-12
 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYV---VLSCRTQEKRSSVASGQGTTPNWNENFVFT 59
           K  L V  + A      +     D YV   V +     +  +    +     W E  V  
Sbjct: 25  KAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81

Query: 60  ISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
           ++E    T  L L +   D  S+    GE  + L   
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 60.0 bits (145), Expect = 3e-12
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
             L V +  AK     +     + YV L  +     S+  + +G+ P+W ++F+F I+  
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNV--ESTTIAVRGSQPSWEQDFMFEINRL 68

Query: 64  TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGN 98
              L +++ +   +  D  VG   IPL ++ ++  
Sbjct: 69  DLGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNE 102

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 59.3 bits (144), Expect = 3e-12
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 17/116 (14%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVL------SCRTQEKRSSVASGQGTT------- 49
            G L + ++ A+ L   D     DP+V +            + +S    + T        
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 50  PNWNENFVFTISE----GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQ 101
           P WN+  ++            L++ + D D  S +DF+GE +I L S     N P+
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPR 132

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC-----RTQEKRSSVASGQGTTPNWNENFVF 58
           G L V+++ AK L+  D     DPYV +       R ++K++++       P +NE+F F
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT-LNPYYNESFSF 83

Query: 59  TISEG---TTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            +         + + ++D D + ++D +G+  +  +S 
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLS-----CRTQEKRSSVASGQGTTPNWNENFVF 58
           G L V ++    L   D     DP+V L       +  + ++ +       P +NE F +
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKT-LNPEFNEEFFY 95

Query: 59  TISEG---TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEA 96
            I        +L + + D D    +D++G   + + +  E 
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGER 136

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 4   GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC-----RTQEKRSSVASGQGTTPNWNENFVF 58
            TL V+++ A+ L  +D     DPYV ++      R  +K++ V         +NE FVF
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCT-PNAVFNELFVF 88

Query: 59  TISEG---TTALKLKIMDSDTVSQDDFVGEAIIPLHS 92
            I        +++  ++DS+  S+++ +G  ++   +
Sbjct: 89  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA 125

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 57.5 bits (139), Expect = 4e-11
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNM-DPYVVLS-----CRTQEKRSSVASGQGTT-PNWNEN 55
           KG LEV ++ A+ L       +   PYV +          +K++ +A  + T  P + ++
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIA--RKTLDPLYQQS 86

Query: 56  FVFTISEGTTALKLKI-MDSDTVSQDDFVGEAIIPLHSV 93
            VF  S     L++ +  D   +    F+G A I L  +
Sbjct: 87  LVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 13/101 (12%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLS-----CRTQEKRSSVASGQGTT-PNWNENF 56
            GTL ++++  K L   D  ++ +PYV         +T ++++ ++  + T  P +NE  
Sbjct: 19  NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKIS--RKTRNPTFNEML 75

Query: 57  VFTISE----GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
           V++           L+L ++ ++++ ++ F+G   +PL   
Sbjct: 76  VYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 53.8 bits (130), Expect = 3e-10
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 14/103 (13%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVL-----SCRTQEKRSSVASGQGTT-PNWNENF 56
              L V ++ AK L   +     +PYV +          ++R+     + T  P WN+ F
Sbjct: 17  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTV--KKTLEPKWNQTF 74

Query: 57  VFTISE----GTTALKLKIMDSDTVSQD--DFVGEAIIPLHSV 93
           +++           L++ + D   V ++  +F+GE +I L + 
Sbjct: 75  IYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 117

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 12/109 (11%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLS-----CRTQEKRSSVASGQGT-TPNWNENF 56
              L + ++  KGL      +  DPYV +S      R + +++          P ++E+F
Sbjct: 26  DRVLLLHIIEGKGLISKQPGTC-DPYVKISLIPEDSRLRHQKTQTV--PDCRDPAFHEHF 82

Query: 57  VFTISEG--TTALKLKIMDSDTVS-QDDFVGEAIIPLHSVFEAGNVPQQ 102
            F + E      L + + +  + S Q   +G     + S+         
Sbjct: 83  FFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISG 131

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 53.5 bits (129), Expect = 5e-10
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 14/102 (13%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLS-----CRTQEKRSSVASGQGTT-PNWNENF 56
           +  L V++   + L         DPYV +       R+  +++ V+  + T  P ++++F
Sbjct: 23  RNKLIVVVHACRNLIAFSE-DGSDPYVRMYLLPDKRRSGRRKTHVS--KKTLNPVFDQSF 79

Query: 57  VFTISE---GTTALKLKIMDSDTVSQDD--FVGEAIIPLHSV 93
            F++S        L + + +S      D   +G+ ++ L S 
Sbjct: 80  DFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 12/131 (9%)

Query: 1   MPKGT---LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFV 57
           +P+G+   L V L     L+        D    ++ R Q   S V        +++E F 
Sbjct: 15  VPRGSHMALIVHLKTVSELRGRA-----DRIAKVTFRGQSFYSRVLENCEDVADFDETFR 69

Query: 58  FTISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV-VKDKKFQ 113
           + ++        L+++I +   V  +  +G   + L  V E   V      +   +   +
Sbjct: 70  WPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK 129

Query: 114 GEVRVGLTFKP 124
             + + + ++ 
Sbjct: 130 TSLSMEVRYQA 140

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 14/103 (13%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVL-----SCRTQEKRSSVASGQGTT-PNWNENF 56
              L V ++ AK L   +     +PYV +          ++R+     + T  P WN+ F
Sbjct: 20  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTV--KKTLEPKWNQTF 77

Query: 57  VFTISE----GTTALKLKIMDSDTVSQD--DFVGEAIIPLHSV 93
           +++           L++ + D   V ++  +F+GE +I L + 
Sbjct: 78  IYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 120

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 7   EVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTA 66
            V    A+ L      +  D Y+ +    QE R+ V       P W +   F     +T 
Sbjct: 397 VVSNFRAEHLWGDYTTAT-DAYLKVFFGGQEFRTGVVW-NNNNPRWTDKMDFENVLLSTG 454

Query: 67  --LKLKIMDSDTVSQDDFVGEAIIPLHS 92
             L++++ D+D    DD +G      HS
Sbjct: 455 GPLRVQVWDADYGWDDDLLGSCDRSPHS 482

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 49.9 bits (118), Expect = 5e-08
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 2   PKGTLEVLLVCAKGLQDTDFL--SNMDPYVVLS-----CRTQEKRSSVASGQGTTPNWNE 54
               L V ++  + L   +    S +DP V++        T  ++++V +  G  P W+ 
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 554

Query: 55  NFVFTISEGTTA-LKLKIMDSDTVSQDDFVGEAIIPLHS 92
            F F ++    A ++  + D D+ S++DF+G++ IP +S
Sbjct: 555 EFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS 593

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 25  MDPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQD 80
           ++PY  +       ++  +  +       P W+  F   I++G   +++ +   +     
Sbjct: 32  VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGRV-MQIIVKGKN----V 86

Query: 81  DFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPEGG 127
           D + E  + L+S+ E          +  + K QG + +   +  E  
Sbjct: 87  DLISETTVELYSLAERCRKNNGKTEIWLELKPQGRMLMNARYFLEMS 133

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 5   TLEVLLVCAKGLQDTDFLSNMDPYVVLS------CRTQEKRSSVASGQGTTPNWNENFVF 58
            L++ ++ A+ L           Y  L        RT  K  S     G T  W E+F F
Sbjct: 12  VLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSA---SGDTVFWGEHFEF 63

Query: 59  TISEGTTALKLKIM----DSDTVSQDDFVGEAIIPLHSV 93
                  AL+L +           +  +VG   +P+ ++
Sbjct: 64  NNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.95
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.92
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.92
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.92
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.92
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.92
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.92
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.91
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.9
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.89
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.87
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.87
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.85
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.84
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.84
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.83
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.83
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.83
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.83
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.83
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.82
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.82
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.82
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.82
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.82
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.82
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.82
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.81
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.81
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.81
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.81
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.8
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.8
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.8
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.79
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.79
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.79
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.79
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.77
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.76
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.7
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.7
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.66
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.65
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.6
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.51
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.49
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.46
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.44
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.44
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.42
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	96.6
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	94.14
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	94.06
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	92.08
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	87.14
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	85.52

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.95  E-value=1.3e-26  Score=152.85  Aligned_cols=128  Identities=63%  Similarity=1.056  Sum_probs=113.6

Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCC
Q 046962            1 MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQD   80 (161)
Q Consensus         1 ~~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d   80 (161)
                      .+.|+|.|+|++|++|+..+..+.+||||.+.+.....+|++++.++.||.|+|+|.|.+......|.|+|||++.+++|
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d   86 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTED   86 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTT
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCC
Confidence            36799999999999999999889999999999998887777775579999999999999988667999999999999899


Q ss_pred             ceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEEeCCCC
Q 046962           81 DFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPEGGH  128 (161)
Q Consensus        81 ~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~~~~~~  128 (161)
                      ++||++.++|.++...+.....||.|.......|+|+|+++|.|....
T Consensus        87 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~~~  134 (136)
T 1wfj_A           87 DAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGPS  134 (136)
T ss_dssp             CCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECCSC
T ss_pred             ceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCCCC
Confidence            999999999999966545556899998777889999999999998654

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.92  E-value=2.5e-24  Score=147.86  Aligned_cols=123  Identities=20%  Similarity=0.472  Sum_probs=97.2

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC------eeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecC
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT------QEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSD   75 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~   75 (161)
                      ..|.|.|+|++|++|+..+..+.+||||.+.+..      ...+|++++ +++||.|++.|.|.+......|.|+|||++
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d   84 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK-KSLNPKWNEEILFRVLPQRHRILFEVFDEN   84 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCS-SCSSCEEEEEEEEEECTTTCEEEEEEEECC
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceEC-CCCCCcccceEEEEEcCCCCEEEEEEEECC
Confidence            4689999999999999999889999999999974      344566665 899999999999999877679999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCc-----cceeEEee---cCCeeceEEEEEEEEEeC
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNV-----PQQAYNVV---KDKKFQGEVRVGLTFKPE  125 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~-----~~~~~~l~---~~~~~~G~i~l~l~~~~~  125 (161)
                      .++++++||++.++|.++......     ...||.|.   ......|.|+|++.|.|.
T Consensus        85 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             ----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            998999999999999999875432     12799997   334568999999999998

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.92  E-value=6.4e-25  Score=144.83  Aligned_cols=121  Identities=20%  Similarity=0.434  Sum_probs=101.5

Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCC-----------CCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEE
Q 046962            1 MPKGTLEVLLVCAKGLQDTDFLSN-----------MDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKL   69 (161)
Q Consensus         1 ~~~g~l~v~i~~a~~L~~~~~~~~-----------~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i   69 (161)
                      |..|.|.|+|++|++|+..+..+.           +||||.+.++.....++..+++++||.|+|+|.|.+... ..|.|
T Consensus         3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~   81 (136)
T 1gmi_A            3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIEL   81 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEE
T ss_pred             ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEE
Confidence            346899999999999998875433           999999999877654555555899999999999998766 89999


Q ss_pred             EEEecCCCCCCceeEEEEEeCccccccCC-ccceeEEeecCCeeceEEEEEEEEEeCC
Q 046962           70 KIMDSDTVSQDDFVGEAIIPLHSVFEAGN-VPQQAYNVVKDKKFQGEVRVGLTFKPEG  126 (161)
Q Consensus        70 ~v~~~~~~~~d~~iG~~~~~l~~l~~~~~-~~~~~~~l~~~~~~~G~i~l~l~~~~~~  126 (161)
                      +|||++..++|++||++.+++.++..... ....|+.|    ++.|+|+|+++|.+..
T Consensus        82 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L----~~~G~i~l~l~~~~~~  135 (136)
T 1gmi_A           82 AVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL----EPEGKVYVIIDLSGSS  135 (136)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC----BSSCEEEEEEEEEEEE
T ss_pred             EEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc----CCCeEEEEEEEEEecC
Confidence            99999999899999999999999987543 33689988    4689999999998643

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=9.8e-24  Score=139.66  Aligned_cols=123  Identities=21%  Similarity=0.451  Sum_probs=105.3

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEecCCC
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDSDTV   77 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~~~~   77 (161)
                      ..|+|.|+|++|++|+..+. +.+||||.+.+.....+|+++. +++||+|+|+|.|.+...    ...|.|+|||++..
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~   82 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVD-NELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI   82 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCC-SCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeec-CCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence            35899999999999999998 8999999999998887777776 899999999999998653    46899999999999


Q ss_pred             CCCceeEEEEEeCccccccCCccceeEE---ee--cCCeeceEEEEEEEEEeCCC
Q 046962           78 SQDDFVGEAIIPLHSVFEAGNVPQQAYN---VV--KDKKFQGEVRVGLTFKPEGG  127 (161)
Q Consensus        78 ~~d~~iG~~~~~l~~l~~~~~~~~~~~~---l~--~~~~~~G~i~l~l~~~~~~~  127 (161)
                      +++++||++.+++.++..+.. ...|+.   |.  ......|+|+|+++|.|...
T Consensus        83 ~~~~~lG~~~i~l~~l~~~~~-~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A           83 GQNKLIGTATVALKDLTGDQS-RSLPYKLISLLNEKGQDTGATIDLVIGYDPPSG  136 (140)
T ss_dssp             SSCCCCEEEEEEGGGTCSSSC-EEEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred             CCCceEEEEEEEHHHhccCCC-ceeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence            899999999999999977543 357887   44  23456799999999998655

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.92  E-value=4.9e-24  Score=143.13  Aligned_cols=122  Identities=21%  Similarity=0.476  Sum_probs=97.3

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC------eeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecC
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT------QEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSD   75 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~   75 (161)
                      ..+.|.|+|++|++|+..+..+.+||||.+.+..      ...+|+++. +++||.|+|+|.|.+......|.|+|||++
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~l~~~V~d~d   96 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK-KSLNPKWNEEILFRVHPQQHRLLFEVFDEN   96 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCS-SCSSCCCCEEEEEEECTTTCEEEEEEEECC
T ss_pred             CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCcccc-CCCCCCCCCEEEEEecCCCCEEEEEEEECC
Confidence            3579999999999999999888999999999973      234555555 899999999999999887779999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCc-----cceeEEeec---CCeeceEEEEEEEEEe
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNV-----PQQAYNVVK---DKKFQGEVRVGLTFKP  124 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~-----~~~~~~l~~---~~~~~G~i~l~l~~~~  124 (161)
                      .++++++||++.+++.++......     ...||.|..   .....|+|+|+++|.|
T Consensus        97 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           97 RLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             SSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            998999999999999999875432     248999972   3467899999999986

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.92  E-value=1.4e-23  Score=140.22  Aligned_cols=118  Identities=28%  Similarity=0.544  Sum_probs=103.5

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCC----
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTV----   77 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~----   77 (161)
                      ..|+|.|+|++|++|+..+..+.+||||.+.++....+|+++. +++||.|+|+|.|.+......|.|+|||++..    
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~   93 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSR   93 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCC-SCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccC-CCCCCCcccEEEEEecCCCCEEEEEEEECCCCcccc
Confidence            4689999999999999999889999999999988888887777 88999999999999988778999999999975    


Q ss_pred             -------CCCceeEEEEEeCccccccCCccceeEEeec---CCeeceEEEEEEEEE
Q 046962           78 -------SQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLTFK  123 (161)
Q Consensus        78 -------~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~~  123 (161)
                             +++++||++.+++.++..   ....||.|..   .....|+|+|+++|.
T Consensus        94 ~~~~~~~~~~~~lG~~~i~l~~l~~---~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           94 VKQRFKRESDDFLGQTIIEVRTLSG---EMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHTTTSSCSSEEEEEEEEEGGGCCS---EEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             ccccccCCCCccEEEEEEEHHHCcC---CCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                   789999999999999943   2358999972   234679999999986

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.92  E-value=1.9e-24  Score=142.03  Aligned_cols=119  Identities=24%  Similarity=0.482  Sum_probs=105.5

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCc
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~   81 (161)
                      +.|+|.|+|++|++|+..+..+.+||||.+.+.....+|+++. +++||.|+|+|.|.+......|.|+|||++..++++
T Consensus        11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~   89 (133)
T 2ep6_A           11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   89 (133)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCS-SCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeec-CCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCC
Confidence            5789999999999999999889999999999998888777777 799999999999999877678999999999988899


Q ss_pred             eeEEEEEeCccccccCCccceeEEeec---CCeeceEEEEEEEEEe
Q 046962           82 FVGEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLTFKP  124 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~~~  124 (161)
                      +||++.+++.++..+.   ..|+.|..   .....|+|+|+++|..
T Consensus        90 ~lG~~~i~l~~l~~~~---~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           90 FLGKVAIPLLSIRDGQ---PNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             ECCBCEEEGGGCCSSC---CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             eeEEEEEEHHHccCCC---ceEEEeecCCCCCccceEEEEEEEEEe
Confidence            9999999999997642   47999872   3457899999999875

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.91  E-value=6e-24  Score=142.93  Aligned_cols=116  Identities=23%  Similarity=0.411  Sum_probs=97.9

Q ss_pred             CCeEEEEEEEeecCCCCCCC----------CCCCCcEEEEEEcCeee-EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEE
Q 046962            2 PKGTLEVLLVCAKGLQDTDF----------LSNMDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTISEGTTALKLK   70 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~----------~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~   70 (161)
                      ..|.|.|+|++|++|+..+.          .+.+||||.+.++.... +|++ .++++||.|||+|.|.+... ..|.|+
T Consensus        27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v-~~ktlnP~WNE~F~f~v~~~-~~L~~~  104 (157)
T 2fk9_A           27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTST-KQKTNKPTYNEEFCANVTDG-GHLELA  104 (157)
T ss_dssp             EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCC-CSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred             CccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeee-cCCCCCCccCcEEEEEcCCC-CEEEEE
Confidence            46899999999999998873          25699999999988765 4554 44899999999999998754 689999


Q ss_pred             EEecCCCCCCceeEEEEEeCcccccc---CCccceeEEeecCCeeceEEEEEEEEE
Q 046962           71 IMDSDTVSQDDFVGEAIIPLHSVFEA---GNVPQQAYNVVKDKKFQGEVRVGLTFK  123 (161)
Q Consensus        71 v~~~~~~~~d~~iG~~~~~l~~l~~~---~~~~~~~~~l~~~~~~~G~i~l~l~~~  123 (161)
                      |||++.+++|++||++.+++.++..+   ......||.|    .+.|+|+|.++|.
T Consensus       105 V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L----~~~G~i~l~l~~~  156 (157)
T 2fk9_A          105 VFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDL----EPEGKVFVVITLT  156 (157)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEEC----BSSCEEEEEEEEC
T ss_pred             EEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEEC----CCCcEEEEEEEEE
Confidence            99999999999999999999999864   2345689999    4589999999874

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.90  E-value=1.4e-22  Score=138.69  Aligned_cols=122  Identities=16%  Similarity=0.308  Sum_probs=100.7

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCc
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~   81 (161)
                      ..++|.|+|++|++|+..+..+.+||||.+.+.....+|++++ +++||+|+|+|.|.+.. ...|.|+|||++.+++|+
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~-~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd  111 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDV  111 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCS-SCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccC-CCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCc
Confidence            3578999999999999444445599999999998666777766 99999999999999864 579999999999999999


Q ss_pred             eeEEEEEeCccccccCCc--c--ceeEEeec---CCeeceEEEEEEEEEeC
Q 046962           82 FVGEAIIPLHSVFEAGNV--P--QQAYNVVK---DKKFQGEVRVGLTFKPE  125 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~~--~--~~~~~l~~---~~~~~G~i~l~l~~~~~  125 (161)
                      +||++.++|.++......  .  ..|+.|..   .....|+|++++.|.+.
T Consensus       112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             eEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            999999999998764322  1  46888873   34578999999999977

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.89  E-value=5.6e-22  Score=129.98  Aligned_cols=119  Identities=16%  Similarity=0.357  Sum_probs=97.4

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC--eeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCC
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT--QEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQ   79 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~--~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~   79 (161)
                      ...+|.|+|++|++|+..+..+.+||||.+.+..  ...+|+++. +++||.|+|+|.|.+... ..|.|+|||++.+++
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~   80 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVK-NTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHK   80 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCS-SCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTS
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccC-CCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCC
Confidence            3568999999999999999989999999999974  445566665 999999999999999876 469999999998865


Q ss_pred             ---CceeEEEEEeCccccccCCccceeEEeecC-----CeeceEEEEEEEE
Q 046962           80 ---DDFVGEAIIPLHSVFEAGNVPQQAYNVVKD-----KKFQGEVRVGLTF  122 (161)
Q Consensus        80 ---d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~-----~~~~G~i~l~l~~  122 (161)
                         |++||++.++++++.........|+.|...     ....|+|+|++++
T Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence               899999999999985543333578888621     2358999999875

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.87  E-value=1e-21  Score=127.61  Aligned_cols=117  Identities=23%  Similarity=0.385  Sum_probs=94.4

Q ss_pred             CeEEEEEEEeecCCCCC---CCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecC
Q 046962            3 KGTLEVLLVCAKGLQDT---DFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~---~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~   75 (161)
                      .|+|.|+|++|++|+..   +..+.+||||.+.+..   ...+|++++ +++||.|+|+|.|.+... ...|.|+|||++
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d   80 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCT-TCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccC-CCCCCcccceEEEEecCCCCCEEEEEEEECC
Confidence            58999999999999984   5568899999999985   455666665 899999999999999544 468999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEEe
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKP  124 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~~  124 (161)
                      .. ++++||++.++|.++..+ .....|+.|.  ....|.|+|++.-.|
T Consensus        81 ~~-~~~~iG~~~i~l~~l~~~-~~~~~~~~L~--~~~~g~i~~~le~~~  125 (126)
T 1rlw_A           81 YV-MDETLGTATFTVSSMKVG-EKKEVPFIFN--QVTEMVLEMSLEVAS  125 (126)
T ss_dssp             SS-CCEEEEEEEEEGGGSCTT-CEEEEEEEET--TTEEEEEEEEEECCC
T ss_pred             CC-CCceeEEEEEEHHHccCC-CcEEEEEEcC--CCceEEEEEEEEeCC
Confidence            87 589999999999999765 3446899984  345677777766443

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.87  E-value=1.5e-21  Score=127.87  Aligned_cols=116  Identities=22%  Similarity=0.364  Sum_probs=85.8

Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCC
Q 046962            1 MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQD   80 (161)
Q Consensus         1 ~~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d   80 (161)
                      |+++.|.|+|++|++++.   .+.+||||.+.  ....+++.+..++.||.|||+|.|.+......|.|+|||++ .++|
T Consensus         2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~d   75 (131)
T 2cjt_A            2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWD   75 (131)
T ss_dssp             CCCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCE
T ss_pred             CcceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCC
Confidence            889999999999998853   47899999999  23344555544689999999999999877678999999999 8899


Q ss_pred             ceeEEEEEeCccccccCC-ccceeEEee-----cCCeeceE-------EEEEEEE
Q 046962           81 DFVGEAIIPLHSVFEAGN-VPQQAYNVV-----KDKKFQGE-------VRVGLTF  122 (161)
Q Consensus        81 ~~iG~~~~~l~~l~~~~~-~~~~~~~l~-----~~~~~~G~-------i~l~l~~  122 (161)
                      ++||++.++|.++..... ....|..+.     .+++..|+       +.+.+.|
T Consensus        76 d~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           76 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             EEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             CeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence            999999999999876431 112343332     33444454       7777665

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.85  E-value=2.9e-21  Score=129.90  Aligned_cols=105  Identities=17%  Similarity=0.242  Sum_probs=89.4

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC---e---eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEE
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---Q---EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIM   72 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~---~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~   72 (161)
                      ..+.|+|.|++|++|+..+..+.+||||++++..   .   .++|++++ +++||+|||+|.|.+...   ...|.|+||
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~-~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~  119 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD-ASDTLVFNEVFWVSMSYPALHQKTLRVDVC  119 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEE-CCSSEEEEEEEEEECCHHHHHHCEEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCC-CCCCCccccEEEEEcCHHHhCcCEEEEEEE
Confidence            3578999999999999999889999999999964   2   45666666 899999999999998653   358999999


Q ss_pred             ecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           73 DSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        73 ~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      |++.++++++||++.++|+++.........||.|.
T Consensus       120 d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          120 TTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             EECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             ECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            99999999999999999999965344557899884

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=2.8e-20  Score=123.12  Aligned_cols=108  Identities=27%  Similarity=0.399  Sum_probs=89.2

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEEEeC----CCCeEEEEEEec
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFTISE----GTTALKLKIMDS   74 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~l~i~v~~~   74 (161)
                      ..+.|.|+|++|++|+..+..+.+||||.+.+.   ....+|+++. +++||.|+|+|.|.+..    ....|.|+|||+
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCT-TCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEc-CCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            357899999999999999988999999999995   3344555554 99999999999998532    246899999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEeecCCe
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKK  111 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~  111 (161)
                      +.++++++||++.+++.++..+. ....||.|.....
T Consensus       103 d~~~~~~~iG~~~i~l~~l~~~~-~~~~W~~L~~~~~  138 (141)
T 2d8k_A          103 DRFSRNDPIGEVSIPLNKVDLTQ-MQTFWKDLKPSGP  138 (141)
T ss_dssp             CSSSSCEEEEEEEEETTTSCTTS-CEEEEECCEECCC
T ss_pred             CCCCCCcEEEEEEEEhhhhcCCC-CccEEEECcCCCC
Confidence            99989999999999999998764 3568999964433

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.84  E-value=4.7e-20  Score=121.15  Aligned_cols=102  Identities=21%  Similarity=0.423  Sum_probs=85.6

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEE-EeCC---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFT-ISEG---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~-~~~~---~~~l~i~v~~   73 (161)
                      .++|.|+|++|++|+. +..+.+||||++.+.     ....+|++++ +++||.|+|+|.|. +...   ...|.|+|||
T Consensus        19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISR-KTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCC-SCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCc-CCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            4789999999999997 667889999999983     3344566665 89999999999999 6542   4689999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      ++.++++++||++.++|.++..+.. ...||.|.
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~-~~~W~~L~  129 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKE-TVKWYQLT  129 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSC-EEEEEECB
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCC-cceeEECC
Confidence            9999899999999999999987533 46899984

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=4e-20  Score=120.55  Aligned_cols=101  Identities=22%  Similarity=0.433  Sum_probs=81.1

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEEEeC-C---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISE-G---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~---~~~l~i~v~~   73 (161)
                      .+.|.|+|++|++|+..+..+.+||||.+.+.     ....+|++++ ++.||.|+|+|.|.+.. .   ...|.|+|||
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d   95 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEPKWNQTFIYSPVHRREFRERMLEITLWD   95 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCS-SBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceeccccc-CCCCCccccEEEEccCCHHHhcCCeEEEEEEE
Confidence            47899999999999999988999999999983     3445566665 89999999999999532 2   3589999999


Q ss_pred             cCCCCC--CceeEEEEEeCccccccCCccceeEEe
Q 046962           74 SDTVSQ--DDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        74 ~~~~~~--d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      ++..++  +++||++.+++.++....  ...||.|
T Consensus        96 ~d~~~~~~~~~lG~~~i~l~~l~~~~--~~~W~~L  128 (129)
T 2bwq_A           96 QARVREEESEFLGEILIELETALLDD--EPHWYKL  128 (129)
T ss_dssp             C-------CEEEEEEEEEGGGCCCSS--CEEEEEC
T ss_pred             CCcCcCcCCceeEEEEEEccccCCCc--CCccEEC
Confidence            998876  999999999999988754  5689987

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=5.9e-20  Score=122.69  Aligned_cols=102  Identities=27%  Similarity=0.439  Sum_probs=88.2

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC--CCeEEEEEEecC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG--TTALKLKIMDSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~l~i~v~~~~   75 (161)
                      .++|.|+|++|++|+..+..+.+||||.+.+..     ...+|++++ +++||.|+|+|.|.+...  ...|.|+|||++
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  108 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-CSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  108 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCS-SCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeC-CCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence            578999999999999999889999999999973     345666666 899999999999998764  358999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .++++++||++.++|.++....  ...||.|.
T Consensus       109 ~~~~~~~iG~~~i~l~~l~~~~--~~~W~~L~  138 (149)
T 1a25_A          109 LTSRNDFMGSLSFGISELQKAG--VDGWFKLL  138 (149)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTCC--EEEEEECB
T ss_pred             CCCCCCEEEEEEEEHHHhCcCc--cCCeEEcc
Confidence            9989999999999999998753  46899985

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=5.9e-20  Score=123.11  Aligned_cols=104  Identities=24%  Similarity=0.351  Sum_probs=88.0

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecC
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSD   75 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~   75 (161)
                      ..+.|.|+|++|++|+..+..+.+||||.+.+.   ....+|++++ +++||.|+|+|.|.+...   ...|.|+|||++
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  118 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  118 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCT-TCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccC-CCCCCcCcccEEEeecHHHcCCCEEEEEEEECC
Confidence            357899999999999999988999999999994   3344566665 899999999999987643   468999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .++++++||++.+++.++..+. ....||.|.
T Consensus       119 ~~~~~~~iG~~~i~l~~l~~~~-~~~~W~~L~  149 (152)
T 1rsy_A          119 RFSKHDIIGEFKVPMNTVDFGH-VTEEWRDLQ  149 (152)
T ss_dssp             SSSCCEEEEEEEEEGGGCCCSS-CEEEEEECB
T ss_pred             CCCCCcEEEEEEEEchhccCCC-CcceEEECC
Confidence            9989999999999999997654 346899884

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.83  E-value=3.1e-20  Score=123.19  Aligned_cols=104  Identities=23%  Similarity=0.333  Sum_probs=87.8

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecC
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSD   75 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~   75 (161)
                      ..++|.|+|++|++|+..+..+.+||||.+.+.   ....+|++++ ++.||.|+|+|.|.+...   ...|.|+|||++
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  110 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCC-SCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCc-CCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence            357899999999999999888899999999993   3345566665 899999999999997644   368999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .++++++||++.++|.++..+.. ...||.|.
T Consensus       111 ~~~~~~~iG~~~i~l~~l~~~~~-~~~W~~L~  141 (143)
T 3f04_A          111 RFSKHDIIGEFKVPMNTVDFGHV-TEEWRDLQ  141 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCTTSC-EEEEEECB
T ss_pred             CCCCCceEEEEEEEHHHccCCCC-cceEEECc
Confidence            99899999999999999987533 45899884

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=3.5e-20  Score=122.54  Aligned_cols=102  Identities=22%  Similarity=0.427  Sum_probs=86.2

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEEE-eCC---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTI-SEG---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~-~~~---~~~l~i~v~~   73 (161)
                      .+.|.|+|++|++|+..+..+.+||||.+.+.     ....+|++++ +++||.|+|+|.|.+ ...   ...|.|+|||
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d   98 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEPKWNQTFIYSPVHRREFRERMLEITLWD   98 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCS-SCSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCcccc-CCCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence            47899999999999999988999999999983     3445666666 899999999999994 322   3689999999


Q ss_pred             cCCCCC--CceeEEEEEeCccccccCCccceeEEee
Q 046962           74 SDTVSQ--DDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        74 ~~~~~~--d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      ++..++  +++||++.++|.++....  ...||.|.
T Consensus        99 ~d~~~~~~~~~lG~~~i~l~~l~~~~--~~~W~~L~  132 (141)
T 1v27_A           99 QARVREEESEFLGEILIELETALLDD--EPHWYKLQ  132 (141)
T ss_dssp             BCSSSSCCBCCCEEEEEEGGGCCCSS--EEEEEECB
T ss_pred             CCCCcCCCCceEEEEEEEccccCCCC--CCceEECc
Confidence            998876  899999999999987653  56899996

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.82  E-value=9.7e-20  Score=122.20  Aligned_cols=104  Identities=18%  Similarity=0.356  Sum_probs=85.5

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeC--CCCeEEEEEEec
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISE--GTTALKLKIMDS   74 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~l~i~v~~~   74 (161)
                      ..++|.|+|++|++|+..+ .+.+||||.+.+..     ...+|++++ +++||.|+|+|.|.+..  ....|.|+|||+
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~  102 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVP-DCRDPAFHEHFFFPVQEEDDQKRLLVTVWNR  102 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCT-TCSSCEEEEEEEEECCGGGTTSEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccC-CCCCCccccEEEEecccHHhCCEEEEEEEeC
Confidence            4589999999999999998 58999999999842     334555665 99999999999999843  335799999999


Q ss_pred             CCCCC-CceeEEEEEeCccccccCCccceeEEee
Q 046962           75 DTVSQ-DDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        75 ~~~~~-d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      +.+++ +++||++.++|.++.........||.|.
T Consensus       103 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~  136 (153)
T 3fbk_A          103 ASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLL  136 (153)
T ss_dssp             CSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECB
T ss_pred             CCCCCCCcEEEEEEEEHHHhcCCCCccccEEECC
Confidence            98876 8999999999999986334456899996

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.82  E-value=3.3e-20  Score=123.80  Aligned_cols=104  Identities=18%  Similarity=0.279  Sum_probs=87.2

Q ss_pred             CeEEEEEEEeecCCCCCC-CCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTD-FLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~-~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~   73 (161)
                      .+.|.|+|++|++|+..+ ..+.+||||.+.+..     ...+|++.+ +++||.|+|+|.|.+...   ...|.|+|||
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d  100 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR-DTVNPLYDETLRYEIPESLLAQRTLQFSVWH  100 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCS-SCSSCEEEEEEEEECCSTTGGGCEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCC-CCCCCcEeeEEEEEeChhHhCceEEEEEEEE
Confidence            578999999999999888 568899999999862     234555555 899999999999998765   3469999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEeec
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK  108 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~  108 (161)
                      ++.++++++||++.++|.++..+.. ...||.|..
T Consensus       101 ~d~~~~~~~iG~~~i~l~~l~~~~~-~~~W~~L~~  134 (148)
T 3fdw_A          101 HGRFGRNTFLGEAEIQMDSWKLDKK-LDHCLPLHG  134 (148)
T ss_dssp             ECGGGCEEEEEEEEEEHHHHHHHCC-SEEEEECBC
T ss_pred             CCCCcCCcEEEEEEEEcccccccCC-ccceEECcC
Confidence            9999899999999999999987543 458999963

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=3.6e-19  Score=130.39  Aligned_cols=124  Identities=23%  Similarity=0.376  Sum_probs=103.2

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecC
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSD   75 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~   75 (161)
                      ..+.|.|+|++|++|+..+..+.+||||.+.+..   ...+|+++. +++||.|+|+|.|.+...   ...|.|+|||++
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCC-SCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCccc-CCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            4578999999999999999889999999999963   344565565 899999999999998653   368999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEeecC----CeeceEEEEEEEEEeCCC
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKD----KKFQGEVRVGLTFKPEGG  127 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~----~~~~G~i~l~l~~~~~~~  127 (161)
                      .++++++||++.++|.++..+. ....|+.|...    ....|.|.+++.|.|...
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~  150 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFGH-VTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAG  150 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCSS-CEEEEEECBCCSSCCCCCCCEEEEEEEEETTTT
T ss_pred             CCCCCceeEEEEEcchhcccCC-cceeEEEeeccccccccccccEEEEEEecCcCC
Confidence            9989999999999999998753 34589999732    346799999999987654

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=1.3e-19  Score=119.55  Aligned_cols=104  Identities=25%  Similarity=0.414  Sum_probs=86.2

Q ss_pred             CeEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEE-EeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFT-ISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~-~~~~---~~~l~i~v~~~   74 (161)
                      .+.|.|+|++|++|+..+.. +.+||||.+.+..   ...+|++++ +++||.|+|+|.|. +...   ...|.|+|||+
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCS-SCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCc-CCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence            57899999999999999985 8899999999963   445566665 99999999999996 6543   35899999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      +.++++++||++.++|.++.........|+.|.
T Consensus       100 d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~  132 (138)
T 1ugk_A          100 DRFSRDDIIGEVLIPLSGIELSEGKMLMNREII  132 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred             CCCCCCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence            999899999999999999987654444567664

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.82  E-value=2.5e-19  Score=132.14  Aligned_cols=125  Identities=24%  Similarity=0.378  Sum_probs=100.7

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEE---cCeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecC
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSC---RTQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSD   75 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~---~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~   75 (161)
                      ..+.|.|+|++|++|+..+..+.+||||.+.+   +....+|++++ +++||.|+|+|.|.+...   ...|.|+|||++
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCC-SCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccC-CCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            35789999999999999998899999999999   34455666665 899999999999998654   348999999999


Q ss_pred             CCCCCceeEEEEEe-CccccccCCccceeEEeec---CCeeceEEEEEEEEEeCCC
Q 046962           76 TVSQDDFVGEAIIP-LHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLTFKPEGG  127 (161)
Q Consensus        76 ~~~~d~~iG~~~~~-l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~~~~~~  127 (161)
                      .++++++||++.++ +.++.........|+.|..   .....|+|++++.|.|...
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~~  152 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAG  152 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTTT
T ss_pred             CCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccccc
Confidence            99999999999985 5555543333457998862   3345799999999987654

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=3.9e-19  Score=117.28  Aligned_cols=102  Identities=21%  Similarity=0.212  Sum_probs=83.0

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc---Cee-eEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR---TQE-KRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS   74 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~---~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~   74 (161)
                      ..+.|.|+|++|++   .+..+.+||||++.+.   ... .+|++++ +++||+|+|+|.|.+...   ...|.|+|||+
T Consensus        24 ~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~-~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T 1wfm_A           24 QKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKK-RQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCC-CCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCc-CCCCCcCCceEEEEecHHHcCCCEEEEEEEEC
Confidence            35789999999993   5667899999999984   222 3445554 999999999999998764   35899999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEeec
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK  108 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~  108 (161)
                      +.++++++||++.++|.++.... ....|+.|..
T Consensus       100 d~~~~dd~lG~~~i~l~~l~~~~-~~~~W~~L~~  132 (138)
T 1wfm_A          100 DRFSRHSVAGELRLGLDGTSVPL-GAAQWGELKT  132 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCT-TCCEEEECCC
T ss_pred             CCCCCCcEEEEEEEEcccccCcc-cccceeeCcC
Confidence            99999999999999999997543 3468999964

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.81  E-value=8.2e-20  Score=124.72  Aligned_cols=104  Identities=24%  Similarity=0.326  Sum_probs=87.1

Q ss_pred             CeEEEEEEEeecCCCCCCC-CCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEE-ecC
Q 046962            3 KGTLEVLLVCAKGLQDTDF-LSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIM-DSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~-~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~-~~~   75 (161)
                      .+.|.|+|++|++|+..+. .+.+||||++.+...     ..+|++++ +++||+|+|+|.|.+......|.|+|| |++
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR-KTLDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCC-CCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            5789999999999999985 689999999998642     34455555 899999999999998776679999999 999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEeec
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK  108 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~  108 (161)
                      .++++++||++.++|.++..+. ....||.|..
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~~~-~~~~W~~L~~  139 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDLSS-MVIGWYKLFP  139 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCTTS-CEEEEEECBC
T ss_pred             CCCCCCEEEEEEEEHHHcccCC-CcceeEECCC
Confidence            9989999999999999998653 3468999973

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.81  E-value=7e-19  Score=119.55  Aligned_cols=117  Identities=21%  Similarity=0.349  Sum_probs=88.1

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCce
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDF   82 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~   82 (161)
                      .+.|.|+|++|++++.   .+.+||||.+.  .+..+|+.+..++.||.|||+|.|.+......|.|+|||++ +.+|++
T Consensus        13 ~~~L~V~V~~A~~l~~---~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   86 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   86 (167)
T ss_dssp             CCEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEE
T ss_pred             eEEEEEEEEEEECCCC---CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCce
Confidence            5799999999998842   47899999999  23345555544689999999999999877678999999999 889999


Q ss_pred             eEEEEEeCccccccCC-----ccceeEEee-cCCeece-------EEEEEEEEEeC
Q 046962           83 VGEAIIPLHSVFEAGN-----VPQQAYNVV-KDKKFQG-------EVRVGLTFKPE  125 (161)
Q Consensus        83 iG~~~~~l~~l~~~~~-----~~~~~~~l~-~~~~~~G-------~i~l~l~~~~~  125 (161)
                      ||++.++|.++.....     ....||.+. .+++..|       .+++.++|...
T Consensus        87 iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~  142 (167)
T 2cjs_A           87 VGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELP  142 (167)
T ss_dssp             EEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECC
T ss_pred             EEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecC
Confidence            9999999999876431     122344433 3444444       47777777533

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=121.06  Aligned_cols=107  Identities=21%  Similarity=0.315  Sum_probs=85.4

Q ss_pred             CCeEEEEEEEeecCCCCC-CC------CCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEE
Q 046962            2 PKGTLEVLLVCAKGLQDT-DF------LSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG---TTALK   68 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~-~~------~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~   68 (161)
                      ..+.|.|+|++|++|+.. +.      .+.+||||.+.+..   ...+|++++ +++||+|+|+|.|.+...   ...|.
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKR-KTQKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCC-SCSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeeccc-CCCCCeEeeeEEEEeChHHhccCEEE
Confidence            357899999999999984 32      35799999999863   344555555 899999999999997653   35899


Q ss_pred             EEEEecCCCCCCceeEEEEEeCccccccCCccceeEEeecCC
Q 046962           69 LKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDK  110 (161)
Q Consensus        69 i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~  110 (161)
                      |+|||++.++++++||++.++|.++..... ...|+.|....
T Consensus       103 ~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~-~~~w~~L~~~~  143 (147)
T 2enp_A          103 LTVVDFDKFSRHCVIGKVSVPLCEVDLVKG-GHWWKALIPSG  143 (147)
T ss_dssp             EEEECCSTTCCSCCCEEEEEETTTSCTTTC-CCEEECCBCCC
T ss_pred             EEEEECCCCcCCcEEEEEEEechhcCCCCC-ccEEEEeecCC
Confidence            999999999899999999999999976543 35788775433

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.3e-19  Score=120.01  Aligned_cols=103  Identities=19%  Similarity=0.296  Sum_probs=85.0

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~   74 (161)
                      .+.|.|+|++|++|+..+..+ +||||.+.+..     ...+|++++ +++||+|+|+|.|.+...   ...|.|+|||+
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  100 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSK-KTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNS  100 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCC-SCSSCEEEEEEEECCCHHHHHHCEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccC-CCCCCCcCceEEEEecHHHhCcCEEEEEEEEC
Confidence            578999999999999999888 99999999843     344566665 899999999999998653   35899999999


Q ss_pred             CCCCC--CceeEEEEEeCccccccCCccceeEEeec
Q 046962           75 DTVSQ--DDFVGEAIIPLHSVFEAGNVPQQAYNVVK  108 (161)
Q Consensus        75 ~~~~~--d~~iG~~~~~l~~l~~~~~~~~~~~~l~~  108 (161)
                      +.++.  +++||++.++|.++.... ....||.|..
T Consensus       101 d~~~~~~~~~iG~~~i~l~~~~~~~-~~~~W~~L~~  135 (142)
T 2dmg_A          101 GGFLSKDKGLLGKVLVALASEELAK-GWTQWYDLTE  135 (142)
T ss_dssp             CCSSCCSCCCCEEEEEECCCSTTTT-CBCCBCCCBC
T ss_pred             CCccccCCcEEEEEEEecccccccc-cccceeeccC
Confidence            98753  579999999999987654 3468999863

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.80  E-value=3.1e-19  Score=118.23  Aligned_cols=102  Identities=25%  Similarity=0.448  Sum_probs=84.6

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEE-EeCC---CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFT-ISEG---TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~-~~~~---~~~l~i~v~~   73 (161)
                      .+.|.|+|++|++|+..+..+.+||||.+.+..     ...+|++++ ++.||.|+|+|.|. +...   ...|.|+|||
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  106 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLR-NTRNPVWNETLQYHGITEEDMQRKTLRISVCD  106 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCC-SCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCC-CCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence            578999999999999999889999999999974     445566665 89999999999998 5433   2589999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      ++.++++++||++.+++.++..+.. ...|+.|
T Consensus       107 ~d~~~~d~~iG~~~i~l~~l~~~~~-~~~~~~L  138 (142)
T 2chd_A          107 EDKFGHNEFIGETRFSLKKLKANQR-KNFNICL  138 (142)
T ss_dssp             ECTTSCEEEEEEEEEEGGGCCTTCC-EEEEEEC
T ss_pred             CCCCCCCcEEEEEEEEHHHcCCCCc-cEEEEec
Confidence            9999899999999999999987543 3345555

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.80  E-value=7.2e-19  Score=118.58  Aligned_cols=105  Identities=22%  Similarity=0.402  Sum_probs=85.5

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD   73 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~   73 (161)
                      ..+.|.|+|++|++|+..+..+.+||||.+.+..     ...+|+++. +++||.|+|+|.|.+...   ...|.|+|||
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  101 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceec-CCCCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence            4579999999999999999889999999999863     233455555 899999999999998654   3579999999


Q ss_pred             cCCCCCCceeEEEEEeCccc----------cc-cCCccceeEEee
Q 046962           74 SDTVSQDDFVGEAIIPLHSV----------FE-AGNVPQQAYNVV  107 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l----------~~-~~~~~~~~~~l~  107 (161)
                      ++.++++++||++.+++..+          .. .......||.|.
T Consensus       102 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~  146 (159)
T 1tjx_A          102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ  146 (159)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             CCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECc
Confidence            99998999999999999853          22 223346899885

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=6.7e-20  Score=121.40  Aligned_cols=103  Identities=25%  Similarity=0.431  Sum_probs=86.7

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe--------------eeEEEEeeCCCCCCeeccEEEEE-EeC---CC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ--------------EKRSSVASGQGTTPNWNENFVFT-ISE---GT   64 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~--------------~~~t~~~~~~~~~P~w~e~~~~~-~~~---~~   64 (161)
                      .|.|.|+|++|++|+..+..+.+||||.+.+...              ..+|++++ +++||.|+|+|.|. +..   ..
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~v~~~~l~~   95 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTH-HHHSCEEEEEEEECSCCHHHHTT
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccC-CCCCCCCCCEEEECCcCHHHccC
Confidence            4789999999999999998899999999999753              23455555 79999999999997 543   24


Q ss_pred             CeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           65 TALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        65 ~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      ..|.|+|||++.++++++||++.++|.++.... ....||.|.
T Consensus        96 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~-~~~~W~~L~  137 (142)
T 1rh8_A           96 KTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-NTPRWYPLK  137 (142)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-TCCEEEECB
T ss_pred             CEEEEEEEECCCCCCCceEEEEEEeccccccCC-CCCeEEECC
Confidence            689999999999989999999999999987653 346899985

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.79  E-value=3.2e-18  Score=111.55  Aligned_cols=117  Identities=17%  Similarity=0.313  Sum_probs=99.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCCCCCc
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~~~d~   81 (161)
                      -|+|.|.+|.+|+     +.+||++++.+....++|+++++++.||+|+|.|.+++..+   +..|.++|||++.+++++
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr   96 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK   96 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence            5899999999998     57999999999988889998875699999999999998765   458999999999999999


Q ss_pred             eeEEEEEeCccccccCCccceeEEee-cCC-eeceEEEEEEEEEeCCC
Q 046962           82 FVGEAIIPLHSVFEAGNVPQQAYNVV-KDK-KFQGEVRVGLTFKPEGG  127 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~-~~~G~i~l~l~~~~~~~  127 (161)
                      +||++.++|.++...+... .+..|. .+. ...+.|.++++|.|+.+
T Consensus        97 lIG~~~i~Lq~lv~~~~l~-l~~~LvD~n~~~~~a~I~l~l~Y~pp~g  143 (144)
T 3l9b_A           97 LIGTFRMVLQKVVEENRVE-VSDTLIDDNNAIIKTSLSMEVRYQAADG  143 (144)
T ss_dssp             EEEEEEEESHHHHHHSEEE-EEEEEECTTSCEEEEEEEEEEEEEETTC
T ss_pred             EEEEEEEEhHHhccCCeEE-EeecccCCCCCccccEEEEEEEecCCCC
Confidence            9999999999999876543 345555 333 34489999999999765

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.79  E-value=1.3e-18  Score=118.18  Aligned_cols=92  Identities=21%  Similarity=0.390  Sum_probs=79.6

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD   73 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~   73 (161)
                      +.+.|.|+|++|++|+..+..+.+||||.+.+..     ...+|++++ +++||.|+|+|.|.+...   ...|.|+|||
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  113 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK-KTLNPEFNEEFFYDIKHSDLAKKSLDISVWD  113 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCC-SCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCccc-CCCCCcccceEEEEcchHhcCCCEEEEEEEE
Confidence            3578999999999999999889999999999975     344555555 899999999999998653   3589999999


Q ss_pred             cCCCCCCceeEEEEEeCcccc
Q 046962           74 SDTVSQDDFVGEAIIPLHSVF   94 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~   94 (161)
                      ++.++++++||++.+++.++.
T Consensus       114 ~d~~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          114 YDIGKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             CCSSSCCEEEEEEEEETTCCH
T ss_pred             CCCCCCCcEEEeEEEecccCC
Confidence            999989999999999999853

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.79  E-value=8.4e-19  Score=115.39  Aligned_cols=92  Identities=25%  Similarity=0.435  Sum_probs=78.5

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEe
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMD   73 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~   73 (161)
                      ..++|.|+|++|++|+..+..+.+||||.+.+...     ..+|+++. ++.||.|+|+|.|.+....   ..|.|+|||
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK-RNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCS-SCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCcccc-CCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            35789999999999999998889999999998632     33455555 8999999999999987653   479999999


Q ss_pred             cCCCCCCceeEEEEEeCcccc
Q 046962           74 SDTVSQDDFVGEAIIPLHSVF   94 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~   94 (161)
                      ++.++++++||++.+++.++.
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSCH
T ss_pred             CCCCCCCcEEEEEEEccccCC
Confidence            999989999999999998754

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.79  E-value=1.6e-18  Score=136.29  Aligned_cols=118  Identities=25%  Similarity=0.355  Sum_probs=100.4

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEecCCCCCCc
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGT-TALKLKIMDSDTVSQDD   81 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~~~~~~~d~   81 (161)
                      .|+|.|+|++|++|+..+..+.+||||.+.++....+|+++. +++||.|+++|.|.+.... ..|.|+|||++..++|+
T Consensus       386 ~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~-~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d  464 (510)
T 3jzy_A          386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQ-DTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD  464 (510)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCS-SCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred             CceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccC-CCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence            578999999999999999889999999999988888887776 8999999999999987654 57999999999999999


Q ss_pred             eeEEEEEeCccccccCC---ccceeEEeecCCeeceEEEEEEEEE
Q 046962           82 FVGEAIIPLHSVFEAGN---VPQQAYNVVKDKKFQGEVRVGLTFK  123 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~---~~~~~~~l~~~~~~~G~i~l~l~~~  123 (161)
                      +||++.+++.++..+..   ....|+.|.  ....|+|+|.+.+.
T Consensus       465 ~lG~~~~~l~~l~~~~~~~~~~~~~~~l~--~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          465 FLGRTEIPVAKIRTEQESKGPMTRRLLLH--EVPTGEVWVRFDLQ  507 (510)
T ss_dssp             EEEEEEEEHHHHHHHHHHHCSCCEEEECB--SSSSCEEEEEEEEE
T ss_pred             ceEEEEEEHHHhccccCCCCceeeeecCC--CCCCceEEEEEEEE
Confidence            99999999999976432   134678774  34679998888764

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.77  E-value=4.3e-18  Score=114.06  Aligned_cols=90  Identities=24%  Similarity=0.427  Sum_probs=72.0

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc--Ce---eeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEe
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR--TQ---EKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMD   73 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~--~~---~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~   73 (161)
                      ..+.|.|+|++|++|+..+..+.+||||.+.+.  ..   .++|++++ +++||.|+|+|.|.+....   ..|.|+|||
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d  106 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVFDIPCESLEEISVEFLVLD  106 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCC-SCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCccc-CCCCCeecceEEEECCHHHhCceEEEEEEEe
Confidence            357899999999999999988899999999984  32   33555555 8999999999999987652   479999999


Q ss_pred             cCCCCCCceeEEEEEeCcc
Q 046962           74 SDTVSQDDFVGEAIIPLHS   92 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~   92 (161)
                      ++.++++++||++.+++.+
T Consensus       107 ~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          107 SERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             CCTTSCCEEEEEEEESTTC
T ss_pred             CCCCCCCcEEEEEEECCCC
Confidence            9999899999999999988

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.76  E-value=1.5e-17  Score=131.00  Aligned_cols=109  Identities=24%  Similarity=0.324  Sum_probs=91.7

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeC--CCCeEEEEEEecCCCCCC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE--GTTALKLKIMDSDTVSQD   80 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~l~i~v~~~~~~~~d   80 (161)
                      +|.|.|+|++|++|+. |.++.+||||+|.+.....+|++++ +++||+|+|.|.|.+..  ....|.|+|||++..+.|
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik-~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVW-NNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBC-SCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeec-CCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            5789999999999998 8889999999999998877777777 89999999999998643  456899999999999899


Q ss_pred             ceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEE
Q 046962           81 DFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFK  123 (161)
Q Consensus        81 ~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~  123 (161)
                      ++||++.++|..    +. ...|+.|     ..|.|+++++..
T Consensus       471 D~LG~~~~~L~~----g~-~~~~~~l-----~~G~l~~~~~~~  503 (540)
T 3nsj_A          471 DLLGSCDRSPHS----GF-HEVTCEL-----NHGRVKFSYHAK  503 (540)
T ss_dssp             EEEEEEEECCCS----EE-EEEEEEC-----SSSEEEEEEEEE
T ss_pred             CEEEEEEEEeeC----Cc-EEEEEEc-----CCeEEEEEEEEE
Confidence            999999999872    22 3467765     368888887755

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.70  E-value=5e-16  Score=124.51  Aligned_cols=118  Identities=20%  Similarity=0.427  Sum_probs=96.1

Q ss_pred             CCeEEEEEEEeecCCCCCCC--CCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEe
Q 046962            2 PKGTLEVLLVCAKGLQDTDF--LSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGT-TALKLKIMD   73 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~--~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~   73 (161)
                      ..++|.|+|++|++|+..+.  .+.+||||.|.+..     ...+|+++.+.++||+|+|+|.|.+..+. ..|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            35789999999999998873  57899999999843     45566777633499999999999988764 489999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccCCccceeEEee-cCCe--eceEEEEEEEEE
Q 046962           74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKK--FQGEVRVGLTFK  123 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~--~~G~i~l~l~~~  123 (161)
                      ++..+++++||++.++|..|..+    .+|+.|. ..++  ..+.|.+.+.|.
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G----~r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQG----YRHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCE----EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCC----cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence            99998999999999999999764    3688886 3333  357888888874

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.70  E-value=2.3e-16  Score=115.43  Aligned_cols=104  Identities=22%  Similarity=0.381  Sum_probs=83.9

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC--e---eeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT--Q---EKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~--~---~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~~   74 (161)
                      .+.|.|.|++|++|+..+..+.+||||.+.+..  .   ..+|.+. +++.||.|+|+|.|.+....   ..|.|+|||+
T Consensus       149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK-KNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCC-CSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeecccee-cCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            468999999999999999889999999999852  2   2344444 48999999999999987652   3799999999


Q ss_pred             CCCCCCceeEEEEEeCcccc-----------ccCCccceeEEee
Q 046962           75 DTVSQDDFVGEAIIPLHSVF-----------EAGNVPQQAYNVV  107 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~-----------~~~~~~~~~~~l~  107 (161)
                      +.++++++||++.+++..+.           ........|+.|.
T Consensus       228 d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~  271 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ  271 (284)
T ss_dssp             CSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECB
T ss_pred             CCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecC
Confidence            99999999999999998632           2223345899885

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.66  E-value=3.1e-16  Score=127.15  Aligned_cols=103  Identities=25%  Similarity=0.414  Sum_probs=88.5

Q ss_pred             CCeEEEEEEEeecCCCC---CCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEec
Q 046962            2 PKGTLEVLLVCAKGLQD---TDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDS   74 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~---~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~   74 (161)
                      +.++|.|+|++|++|+.   .+..+.+||||++.+..   ...+|++++ +++||+|+|+|.|.+... ...|.|+|||+
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik-~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCT-TCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEc-CCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            56899999999999998   77778999999999983   455666666 899999999999999874 46899999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      +.++ |++||++.++|.+|..+. ....|+.|.
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~-~~~~w~~L~  125 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGE-KKEVPFIFN  125 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTC-CCCEEEEET
T ss_pred             CCCC-CceeEEEEEEHHHcCCCC-ceEEEEecC
Confidence            9998 999999999999997653 346899984

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.65  E-value=5.4e-17  Score=119.63  Aligned_cols=106  Identities=21%  Similarity=0.395  Sum_probs=85.1

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~   74 (161)
                      .|.|.|.|++|++|+..+..+.+||||++.+..     ..++|++.+ ++.||.|+|.|.|.+...   ...|.|+|||+
T Consensus       151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCC-SCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceec-CCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            578999999999999999888999999999862     234555555 899999999999988765   24799999999


Q ss_pred             CCCCCCceeEEEEEeCccccc------------cCCccceeEEeecC
Q 046962           75 DTVSQDDFVGEAIIPLHSVFE------------AGNVPQQAYNVVKD  109 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~------------~~~~~~~~~~l~~~  109 (161)
                      +.++++++||++.+++.++..            .+.....|+.|...
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             CCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence            999999999999999987643            22234567777633

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.60  E-value=7.5e-17  Score=126.05  Aligned_cols=117  Identities=21%  Similarity=0.313  Sum_probs=19.9

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeee-EEEEeeCCC---CCCeeccEEEEEEeCCCCeEEEEEEec-C--
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEK-RSSVASGQG---TTPNWNENFVFTISEGTTALKLKIMDS-D--   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~-~t~~~~~~~---~~P~w~e~~~~~~~~~~~~l~i~v~~~-~--   75 (161)
                      .++|.|+|++|++|+.++     ||||.+.++.... +|++.+ ++   .||.|+|+|.|.+......|.|+|||. +  
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~-kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~   83 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKP-RSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKK   83 (483)
T ss_dssp             EECC---------------------------------------------------CCEECC-------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEe-CCCCCCCCccccEEEEecCCCccEEEEEEEecCCcc
Confidence            468999999999998775     8999999986643 555555 77   999999999998655457899999994 4  


Q ss_pred             -CCCCCceeEEEEEeCccccccCCccceeEEee-cC------------------------CeeceEEEEEEEEEeCC
Q 046962           76 -TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KD------------------------KKFQGEVRVGLTFKPEG  126 (161)
Q Consensus        76 -~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~------------------------~~~~G~i~l~l~~~~~~  126 (161)
                       ..++|++||++.+++.++..+. ....||.|. ..                        ....|.|+|.+.|.+..
T Consensus        84 ~~~~~d~~lG~v~i~l~~l~~~~-~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~  159 (483)
T 3bxj_A           84 RKKDKAGYVGLVTVPVATLAGRH-FTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS  159 (483)
T ss_dssp             ------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred             ccCCCCceEEEEEEEHHHhcCCC-CCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence             3578999999999999998754 346899995 11                        12458899999998654

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.51  E-value=9.2e-13  Score=83.55  Aligned_cols=112  Identities=13%  Similarity=0.173  Sum_probs=86.2

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeE---E-EEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKR---S-SVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVS   78 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~---t-~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~   78 (161)
                      ..-|+|.+.+..--+........||||.|.++.....   + ...+++|..|.|++.|...+... ..|.|.||+...  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a~--   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAAE--   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-CEEEEEEEEETT--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-EEEEEEEEcCCC--
Confidence            3467788866553222222246899999998765533   3 37777899999999999998876 899999997654  


Q ss_pred             CCceeEEEEEeCcccccc----CCccceeEEeecCCeeceEEEEEEEEE
Q 046962           79 QDDFVGEAIIPLHSVFEA----GNVPQQAYNVVKDKKFQGEVRVGLTFK  123 (161)
Q Consensus        79 ~d~~iG~~~~~l~~l~~~----~~~~~~~~~l~~~~~~~G~i~l~l~~~  123 (161)
                        +|++.+.+++.+|+..    .+....|..|    ++.|+|++.+.|+
T Consensus        82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdL----eP~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDL----QPQAKVLMSVQYF  124 (126)
T ss_dssp             --EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC----BSSCEEEEEEEEE
T ss_pred             --CeeeEEEEEHHHHHhhhccCCCceEEEEec----ccCcEEEEEEEEe
Confidence              8999999999999853    2344678888    8899999999987

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.49  E-value=6.1e-14  Score=113.70  Aligned_cols=103  Identities=27%  Similarity=0.439  Sum_probs=87.4

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEEEeCC--CCeEEEEEEec
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEG--TTALKLKIMDS   74 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~l~i~v~~~   74 (161)
                      ..+.|.|++++|++|+..+..+.+|||+.+.+.     ....+|++++ +++||.|+|+|.|.+...  ...|.|+|||+
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~-~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~  248 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-SSLNPEWNETFRFQLKESDKDRRLSVEIWDW  248 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCS-SCSSCEEEEEEEEECCSTTTTCEEEEEEEEC
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccc-cccCCCccceeeeecccCCccceeeeEEeec
Confidence            357899999999999999999999999999983     2344566665 899999999999998754  34799999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      +..+++++||.+.+++.++.....  ..|+.|.
T Consensus       249 d~~~~dd~iG~~~i~l~~l~~~~~--~~w~~Ll  279 (674)
T 3pfq_A          249 DLTSRNDFMGSLSFGISELQKAGV--DGWFKLL  279 (674)
T ss_dssp             CSSSCCEECCBCCCBTTHHHHCCE--EEEEECB
T ss_pred             ccccccccccccccchhhhccCCc--ccceeec
Confidence            999999999999999999987543  6899886

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.46  E-value=2.2e-12  Score=82.89  Aligned_cols=111  Identities=15%  Similarity=0.232  Sum_probs=85.6

Q ss_pred             eEEEEEEEeecCCCCCC-CCCCCCcEEEEEEcCeee---EEE-EeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCC
Q 046962            4 GTLEVLLVCAKGLQDTD-FLSNMDPYVVLSCRTQEK---RSS-VASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVS   78 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~-~~~~~dp~v~i~~~~~~~---~t~-~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~   78 (161)
                      +-|+|.+.+..-.+... .....||||.|.++....   .++ ..+++|..|.|++.|...+... +.|.|.||+...  
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a~--   86 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-RVMQIIVKGKNV--   86 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-CEEEEEEECSSC--
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-eEEEEEEEcCCC--
Confidence            45778887665433221 123689999999976644   444 6666899999999999998876 899999996553  


Q ss_pred             CCceeEEEEEeCcccccc----CCccceeEEeecCCeeceEEEEEEEEE
Q 046962           79 QDDFVGEAIIPLHSVFEA----GNVPQQAYNVVKDKKFQGEVRVGLTFK  123 (161)
Q Consensus        79 ~d~~iG~~~~~l~~l~~~----~~~~~~~~~l~~~~~~~G~i~l~l~~~  123 (161)
                        +|++.+.+++.+|+..    .+....|..|    ++.|+|++.+.|.
T Consensus        87 --~fVAn~tV~~edL~~~ck~~~g~~e~WvdL----eP~Gkl~v~i~~~  129 (138)
T 2enj_A           87 --DLISETTVELYSLAERCRKNNGKTEIWLEL----KPQGRMLMNARYF  129 (138)
T ss_dssp             --SCCEEEEEESHHHHHHHHHTTTCEEEEEEC----BSSCEEEEEEEEC
T ss_pred             --CeeeEEEEEHHHHHhhhccCCCceEEEEec----ccCcEEEEEEEEE
Confidence              8999999999999853    2345678888    8899999999996

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.44  E-value=3.8e-12  Score=104.33  Aligned_cols=113  Identities=18%  Similarity=0.375  Sum_probs=87.2

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-------eeeEEEEeeCCCCCCeeccE-EEEE-EeCCC-CeEEEEEE
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-------QEKRSSVASGQGTTPNWNEN-FVFT-ISEGT-TALKLKIM   72 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-------~~~~t~~~~~~~~~P~w~e~-~~~~-~~~~~-~~l~i~v~   72 (161)
                      .++|+|+|++|++|+..    .+||||.|.+..       ..++|+++..+++||+|||+ |.|. +..+. ..|.|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999854    589999999853       34567777756799999997 9998 65553 47899999


Q ss_pred             ecCCCCCCceeEEEEEeCccccccCCccceeEEee-cCCe--eceEEEEEEEEEeCCC
Q 046962           73 DSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKK--FQGEVRVGLTFKPEGG  127 (161)
Q Consensus        73 ~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~--~~G~i~l~l~~~~~~~  127 (161)
                      |++    +++||++.+||..|..+    -++..|. ..++  ..+.|.+.+.+.....
T Consensus       725 D~d----ddfiG~~~ipL~~L~~G----yR~vpL~~~~g~~~~~atLfv~i~~~~~~~  774 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPG----YRHVPLRNESNRPLGLASVFAHIVAKDYVS  774 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCE----EEEEEEECTTSCEEEEEEEEEEEEEEECCC
T ss_pred             ecC----CCeeeEEEEEHHHcCCc----ceEEEEeCCCCCCCCceEEEEEEEEEecCc
Confidence            985    78999999999999875    2456665 3333  3478888888774433

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.44  E-value=2.4e-12  Score=105.70  Aligned_cols=110  Identities=21%  Similarity=0.378  Sum_probs=84.6

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC------eeeEEE-EeeCCCCCCeecc-EEEE-EEeCCC-CeEEEEE
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT------QEKRSS-VASGQGTTPNWNE-NFVF-TISEGT-TALKLKI   71 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~------~~~~t~-~~~~~~~~P~w~e-~~~~-~~~~~~-~~l~i~v   71 (161)
                      ..++|.|+|++|++|+.    ..+||||.|.+..      ..++|+ ++..+++||+||| +|.| .+..+. ..|.|+|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            35799999999999985    3689999999842      235666 6665679999999 6999 776553 3799999


Q ss_pred             EecCCCCCCceeEEEEEeCccccccCCccceeEEee-cCCe--eceEEEEEEEEE
Q 046962           72 MDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKK--FQGEVRVGLTFK  123 (161)
Q Consensus        72 ~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~--~~G~i~l~l~~~  123 (161)
                      ||++    +++||++.+++..|..+    .++..|. ..+.  ..+.|.+.+.+.
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G----~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSG----YHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCE----EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEeC----CCccceEeeehhhcCCC----cEEEeccCCCCCCCCceEEEEEEEEE
Confidence            9986    78999999999999764    3567775 2333  347777777764

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.42  E-value=3.5e-12  Score=105.20  Aligned_cols=111  Identities=18%  Similarity=0.313  Sum_probs=86.3

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC------eeeEEEEeeCCCCCCeecc-EEEEE-EeCCC-CeEEEEEEec
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT------QEKRSSVASGQGTTPNWNE-NFVFT-ISEGT-TALKLKIMDS   74 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~------~~~~t~~~~~~~~~P~w~e-~~~~~-~~~~~-~~l~i~v~~~   74 (161)
                      .+|.|+|++|++|+..    .+||||.|.+..      ..++|+++..+++||+||| +|.|. +..+. ..|.|+|||+
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            4799999999999853    589999999853      2356777765679999998 69998 65443 4799999998


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee-cCCe--eceEEEEEEEEEeCC
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKK--FQGEVRVGLTFKPEG  126 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~--~~G~i~l~l~~~~~~  126 (161)
                      +    +++||++.+||..|..+    -++..|. ..+.  ..|.|.+.+.+....
T Consensus       801 d----ddfiG~~~lpL~~L~~G----yR~vpL~~~~g~~l~~atLfv~i~~~~~~  847 (885)
T 3ohm_B          801 G----GKFVGHRILPVSAIRSG----YHYVCLRNEANQPLCLPALLIYTEASDYI  847 (885)
T ss_dssp             T----TEEEEEEEEETTTCCCE----EEEEEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred             C----ccEEeeEEEEHHHcCCC----ceEEEecCCCCCccCceEEEEEEEEEecC
Confidence            7    78999999999999864    2456665 3333  468899999887543

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=96.60  E-value=0.024  Score=37.32  Aligned_cols=122  Identities=9%  Similarity=0.126  Sum_probs=78.8

Q ss_pred             eEEEEEEEeecCCCCCCC---CCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC--------CCeEEEEEE
Q 046962            4 GTLEVLLVCAKGLQDTDF---LSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG--------TTALKLKIM   72 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~---~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------~~~l~i~v~   72 (161)
                      +.+.|+|.++.--+..-.   ...+-.||.+.+-.-...++.+. ...+|.++-+-.+.+...        ...+.++++
T Consensus        18 nlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~-~G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELh   96 (156)
T 2yrb_A           18 NLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVV-RGLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVH   96 (156)
T ss_dssp             EEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCE-ESSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEE
T ss_pred             cEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeecccc-cCCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEE
Confidence            457777777653111100   01345566666655554555554 588999998888887655        247889998


Q ss_pred             ecCCCCCCceeEEEEEeCccccccCCccceeEEee-cCC--eeceEEEEEEEEEeCCC
Q 046962           73 DSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDK--KFQGEVRVGLTFKPEGG  127 (161)
Q Consensus        73 ~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~--~~~G~i~l~l~~~~~~~  127 (161)
                      ..... .-..+|.++++|.++....+.......|. ..+  ...|.|.+.+++..+-.
T Consensus        97 qa~g~-~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~Pi~  153 (156)
T 2yrb_A           97 QAYST-EYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRVSGP  153 (156)
T ss_dssp             EECSS-CEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEECCC
T ss_pred             EeeCC-CceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEecccC
Confidence            87533 45689999999999987644332334555 333  46899999999875543

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=94.14  E-value=0.89  Score=38.45  Aligned_cols=88  Identities=16%  Similarity=0.162  Sum_probs=57.1

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEE--cCe----eeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEe
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQ----EKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMD   73 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~----~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~   73 (161)
                      ..+.|+|..+.++...   ...+.||.+.+  +.+    ...|..+. ...+|.|+|.+.|++.-.    +..|.|+||+
T Consensus       217 ~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~-~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          217 QPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVN-VCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             SEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEE-SCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceeccccc-CCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            5789999999988654   24566777655  322    22333332 466899999999987543    3589999998


Q ss_pred             cCCC--C----------CCceeEEEEEeCccccc
Q 046962           74 SDTV--S----------QDDFVGEAIIPLHSVFE   95 (161)
Q Consensus        74 ~~~~--~----------~d~~iG~~~~~l~~l~~   95 (161)
                      ....  +          .+..+|.+.++|-+-..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~  326 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYKD  326 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCTTS
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECCcC
Confidence            6321  1          23488999998877543

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=94.06  E-value=0.99  Score=31.38  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             EeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCC----CCCceeEEEEEeCcc
Q 046962           42 VASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTV----SQDDFVGEAIIPLHS   92 (161)
Q Consensus        42 ~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~----~~d~~iG~~~~~l~~   92 (161)
                      .+...+.+|.|+|++.+.+...   ...|.|++++....    ..+..+|-+++||-+
T Consensus        82 ~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           82 VIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             CCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             EEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            3334678999999999998876   34899999875421    233578999999753

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=92.08  E-value=2.1  Score=36.72  Aligned_cols=91  Identities=16%  Similarity=0.154  Sum_probs=59.0

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc--Ceee---EEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEe
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR--TQEK---RSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMD   73 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~--~~~~---~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~   73 (161)
                      ...+.|+|..+.++.... ....+.||.+.+-  .+..   .++... ...+|.|+|.+.|++.-.    ...|.|+||+
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            357899999998876443 2345677777663  2221   122222 345788999999987543    4589999998


Q ss_pred             cCCC----CCCceeEEEEEeCccccc
Q 046962           74 SDTV----SQDDFVGEAIIPLHSVFE   95 (161)
Q Consensus        74 ~~~~----~~d~~iG~~~~~l~~l~~   95 (161)
                      ....    ..+..+|.+.++|-|...
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~~~  457 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDYTD  457 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCTTC
T ss_pred             ecCccCcccccceeEEeeeeeEccCC
Confidence            6532    134589999999987644

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=87.14  E-value=0.89  Score=39.05  Aligned_cols=67  Identities=19%  Similarity=0.213  Sum_probs=44.5

Q ss_pred             eEEEEEEEeecCCCCCCCCCCCCcEEEEEE--cCee----eEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEe
Q 046962            4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQE----KRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMD   73 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~~----~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~   73 (161)
                      ..+.|+|..+.++...+   ..+.||.+.+  +.+.    ..|..+ ....+|.|++.+.|++.-.    ...|.|+||+
T Consensus       353 ~~f~i~i~~~~~~~~~~---~~~~~V~~~l~~g~~~L~~~~~T~~~-~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~  428 (1092)
T 2y3a_A          353 NPFQITLVKGNKLNTEE---TVKVHVRAGLFHGTELLCKTVVSSEI-SGKNDHIWNEQLEFDINICDLPRMARLCFAVYA  428 (1092)
T ss_dssp             SEEEEEECCCCCCCCCS---SCCCCCBCCEEETTEESSCCCBCCCC-CSSSCCCCCEEEEEEEESSSCCTTCEEEEECCC
T ss_pred             CCEEEEEEEeccCCCCC---CceEEEEEEEEECCEEccCceecccc-cCCCCCccceeEEeCCccccCChhcEEEEEEEE
Confidence            57889999998886542   3555655443  3332    223222 2466899999999987654    3589999998


Q ss_pred             c
Q 046962           74 S   74 (161)
Q Consensus        74 ~   74 (161)
                      .
T Consensus       429 ~  429 (1092)
T 2y3a_A          429 V  429 (1092)
T ss_dssp             C
T ss_pred             e
Confidence            6

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-37
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-17
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	3e-17
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	7e-16
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	4e-15
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	7e-14
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	3e-13
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-12
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-12
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	3e-12
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	9e-12
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	3e-11
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	8e-11
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-10
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	1e-08
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	6e-07
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	1e-06
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	7e-06

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (307), Expect = 3e-37
 Identities = 80/125 (64%), Positives = 100/125 (80%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTIS 61
           P GTLEV+LV AKGL+D DFL+NMDPYV L+CRTQ+++S+VA G GTTP WNE F+FT+S
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67

Query: 62  EGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLT 121
           EGTT LK KI D D  ++DD VGEA IPL  VF  G++P  AYNVVKD++++GE+ V L+
Sbjct: 68  EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

Query: 122 FKPEG 126
           FKP G
Sbjct: 128 FKPSG 132

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 1e-17
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 1/121 (0%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTIS 61
             G L+V ++ A  L   DF    DP+ +L       ++         P WN+ F F I 
Sbjct: 4   DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKN-LNPEWNKVFTFPIK 62

Query: 62  EGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLT 121
           +    L++ + D D     DF+G+  IPL S+ +         N   ++ F+G + + + 
Sbjct: 63  DIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 122

Query: 122 F 122
            
Sbjct: 123 L 123

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 3e-17
 Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE 62
           K  L++ ++ AK  ++        PYV ++   Q K++   +    +P W +     ++ 
Sbjct: 5   KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTP 63

Query: 63  GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGN-------VPQQAYNVVKDKKFQGE 115
            +     ++    T+  D  +G A + ++   ++ N       V  Q     +  +  G+
Sbjct: 64  VSKL-HFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGD 122

Query: 116 VRVGL 120
           + + L
Sbjct: 123 LSICL 127

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.8 bits (165), Expect = 7e-16
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 1   MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVAS----GQGTTPNWNENF 56
           + +  L V++  AK L   D     DPYV L      K  S            P WNE F
Sbjct: 12  IDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 71

Query: 57  VFTISEG--TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG 97
            F + E      L ++I D D  S++DF+G     +  + +AG
Sbjct: 72  RFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 114

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.9 bits (160), Expect = 4e-15
 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLS----CRTQEKRSSVASGQGTTPNWNENFVF 58
             TL V+++ A+ L  +D     DPYV ++     +   K+ +          +NE FVF
Sbjct: 14  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73

Query: 59  TISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEA 96
            I        +++  ++DS+  S+++ +G  ++   +    
Sbjct: 74  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG 114

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.5 bits (151), Expect = 7e-14
 Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 5   TLEVLLVCAKGLQ--DTDFLSNMDPYVVLSC-----RTQEKRSSVASGQGTTPNWNENFV 57
            L V ++  + L   + +  S +DP V++        T  ++++V +  G  P W+  F 
Sbjct: 5   RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64

Query: 58  FTIS-EGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFE 95
           F ++      ++  + D D+ S++DF+G++ IP +S+ +
Sbjct: 65  FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 103

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 3e-13
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 12/106 (11%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLS-----CRTQEKRSSVASGQGTTPNWNENFV 57
              L V ++ AK L   +     +PYV +          ++R+         P WN+ F+
Sbjct: 13  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT-LEPKWNQTFI 71

Query: 58  FTISE----GTTALKLKIMDSDTVSQD--DFVGEAIIPLHSVFEAG 97
           ++           L++ + D   V ++  +F+GE +I L +     
Sbjct: 72  YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 117

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.4 bits (143), Expect = 1e-12
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYV---VLSCRTQEKRSSVASGQGTTPNWNENFVF 58
               L V ++ A  L   D     DPYV   +L  + ++  + V       P +NE F F
Sbjct: 32  QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-LNPVFNEQFTF 90

Query: 59  TISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            +     G   L + + D D  S+ D +GE  +P+++V
Sbjct: 91  KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.7 bits (141), Expect = 2e-12
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSC----RTQEKRSSVASGQGTTPNWNENFV 57
             G L V ++ A  L+  D     DPYV  S     R  +KR +        P +NE  V
Sbjct: 18  TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77

Query: 58  FTIS---EGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG 97
           F ++        L + ++D D +  ++ +G   +   +    G
Sbjct: 78  FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 120

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.2 bits (140), Expect = 3e-12
 Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 12/117 (10%)

Query: 6   LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTT 65
           L V +  AK     +     + YV L  +  +  +     +G+ P+W ++F+F I+    
Sbjct: 4   LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV--RGSQPSWEQDFMFEINRLDL 58

Query: 66  ALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGN------VPQQAYNVVKDKKFQGEV 116
            L +++ +   +  D  VG   IPL ++ ++        +   +  ++ D +  G  
Sbjct: 59  GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTK 114

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 57.2 bits (137), Expect = 9e-12
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 4   GTLEVLLVCAKGLQDTDFL-----------SNMDPYVVLSCRTQEKRSSVASGQGTTPNW 52
           G L++ +  A  L+ T +              +DPY+ L+        +    +  +P W
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 53  NENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKF 112
           ++ FV  +  G    +L +     +  DDFV    I    + + G+   + +    D + 
Sbjct: 66  HDEFVTDVCNGRKI-ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDW---IDLEP 121

Query: 113 QGEVRVGLTFKPEGG 127
           +G+V V +      G
Sbjct: 122 EGKVYVIIDLSGSSG 136

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 1e-11
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 4   GTLEVLLVCAKGLQDT---DFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
               V+++ A  +      D L   DPYV L   T               N   N  F  
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 61  ---SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVR 117
                    L++ +MD++ V  D+ +G A   + S+ + G   +  +    ++  +  + 
Sbjct: 63  ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSM-KVGEKKEVPFIF--NQVTEMVLE 118

Query: 118 VGLTFKP 124
           + L    
Sbjct: 119 MSLEVAS 125

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.0 bits (134), Expect = 3e-11
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVF 58
           +G L V ++    L   D     DP+V L        + K  +    +   P +NE F +
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73

Query: 59  TISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFE 95
            I        +L + + D D    +D++G   + + +  E
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE 113

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.5 bits (130), Expect = 8e-11
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 17/116 (14%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGT-------------T 49
            G L + ++ A+ L   D     DP+V +       +  V                    
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 50  PNWNENFVFTI----SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQ 101
           P WN+  ++            L++ + D D  S +DF+GE +I L S     N P+
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPR 132

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 1e-10
 Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSC-----RTQEKRSSVASGQGTTPNWNENF 56
             G L V+++ AK L+  D     DPYV +       R ++K++++       P +NE+F
Sbjct: 23  TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT-LNPYYNESF 81

Query: 57  VFTISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
            F +         + + ++D D + ++D +G+  +  +S 
Sbjct: 82  SFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLS-NMDPYVVLSC---RTQEKRSSVASGQGTTPNWNENFV 57
            +    V +  A+GL   D  S   DPY+ ++    +  + ++ V       P ++E F 
Sbjct: 20  ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT-LDPAFDETFT 78

Query: 58  FTI----SEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
           F           AL   I+  D  S+DD +GE +IPL  +
Sbjct: 79  FYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.8 bits (102), Expect = 6e-07
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 2   PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE--KRSSVASGQGTTPNWNENFVFT 59
               L V ++ A  L   D     DPYV +        K  +    +   P +NE F F+
Sbjct: 16  GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS 75

Query: 60  ISEG---TTALKLKIMDSDTVSQDDFVGEAIIPLHSVF 94
           +         L   + D D  S+ D +G+ ++      
Sbjct: 76  VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLEL 113

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 1e-06
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 18/99 (18%)

Query: 5  TLEVLLVCAKGLQDTDFLSNMDPYVVLS-------CRTQEKRSSVASGQGTTPNWNEN-- 55
          TL + ++  + L +         YV +         + + +     S     P W E   
Sbjct: 2  TLSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 57

Query: 56 -FVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
           F   +     +L++ +M+      + F+G  IIP++++
Sbjct: 58 VFEKILMPELASLRVAVMEEG----NKFLGHRIIPINAL 92

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 7e-06
 Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 9/105 (8%)

Query: 3   KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSC---RTQEKRSSVASGQGTTPNWNENFVFT 59
           K  L V  + A      +     D YV  S        +  +    +     W E  V  
Sbjct: 25  KAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81

Query: 60  IS---EGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQ 101
           ++     T  L L +   D  S+    GE  + L          Q
Sbjct: 82  LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQ 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.96
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.93
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.91
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.89
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.87
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.85
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.84
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.84
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.83
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.82
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.8
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.77
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.77
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.76
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.76
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.75
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.75
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.75
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.66
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.58
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	95.43
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	94.58

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1.5e-28  Score=160.76  Aligned_cols=126  Identities=63%  Similarity=1.083  Sum_probs=114.2

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCc
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~   81 (161)
                      |.|+|.|+|++|++|+..+..+.+||||.+.++....+|+.++.++.||.|+|+|.|.+......|.|+|||++..++|+
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~   87 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDD   87 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTC
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCCCC
Confidence            67999999999999999998899999999999998888888876789999999999999987778999999999998999


Q ss_pred             eeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEEeCCC
Q 046962           82 FVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPEGG  127 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~~~~~  127 (161)
                      +||++.++|.++.........|+.+..+.+..|+|+|+++|.|...
T Consensus        88 ~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~~p  133 (136)
T d1wfja_          88 AVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             CSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECCS
T ss_pred             EEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeCCC
Confidence            9999999999987765656789999888889999999999998643

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.6e-26  Score=146.98  Aligned_cols=119  Identities=24%  Similarity=0.473  Sum_probs=105.0

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCc
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~   81 (161)
                      ++|.|.|+|++|++|+..+..+.+||||.+.+++..++|+++. ++.||.|+|.|.|.+......|.|+|||++..++|+
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCS-SCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeC-CceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            5799999999999999999889999999999999888888776 899999999999999877789999999999988899


Q ss_pred             eeEEEEEeCccccccCCccceeEEee---cCCeeceEEEEEEEEEe
Q 046962           82 FVGEAIIPLHSVFEAGNVPQQAYNVV---KDKKFQGEVRVGLTFKP  124 (161)
Q Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~l~---~~~~~~G~i~l~l~~~~  124 (161)
                      +||++.++|.++..+.   ..|+.|.   ......|+|+|+++|..
T Consensus        83 ~lG~~~i~l~~l~~~~---~~~~~l~~~~~~~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDGQ---PNCYVLKNKDLEQAFKGVIYLEMDLIY  125 (126)
T ss_dssp             ECCBCEEEGGGCCSSC---CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             eEEEEEEEHHHCCCCC---ceEEEccccCCCCceeEEEEEEEEEEE
Confidence            9999999999987643   3688775   34556799999999874

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.91  E-value=4.2e-24  Score=139.32  Aligned_cols=120  Identities=20%  Similarity=0.407  Sum_probs=101.8

Q ss_pred             CCeEEEEEEEeecCCCCCC-----------CCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEE
Q 046962            2 PKGTLEVLLVCAKGLQDTD-----------FLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLK   70 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~-----------~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~   70 (161)
                      -.|.|.|+|++|++|++.+           ..+.+||||.+.+++....++.+.+++.+|.|+|+|.|.+... ..|.|+
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l~i~   82 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC-CceEEE
Confidence            3689999999999998753           3467899999999988776555555899999999999999764 789999


Q ss_pred             EEecCCCCCCceeEEEEEeCccccccCC-ccceeEEeecCCeeceEEEEEEEEEeCC
Q 046962           71 IMDSDTVSQDDFVGEAIIPLHSVFEAGN-VPQQAYNVVKDKKFQGEVRVGLTFKPEG  126 (161)
Q Consensus        71 v~~~~~~~~d~~iG~~~~~l~~l~~~~~-~~~~~~~l~~~~~~~G~i~l~l~~~~~~  126 (161)
                      |||++.+++|++||.+.++|+++..... ....|+.|    ++.|+|++.+++.+.+
T Consensus        83 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L----~p~G~v~l~v~~~~~~  135 (136)
T d1gmia_          83 VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL----EPEGKVYVIIDLSGSS  135 (136)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC----BSSCEEEEEEEEEEEE
T ss_pred             EEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeC----CCCcEEEEEEEEEeCC
Confidence            9999999899999999999999977543 34579998    5689999999998864

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.3e-22  Score=129.73  Aligned_cols=120  Identities=16%  Similarity=0.329  Sum_probs=97.4

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCce
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDF   82 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~   82 (161)
                      +++|.|+|++|++++..+..+.+||||.+.++++..+|++.. ++.||.|+|.|.|.+... ..|.|+|||++.+++|++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~-~~l~~~V~d~d~~~~d~~   82 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTPV-SKLHFRVWSHQTLKSDVL   82 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCS-SCSSCEEEEEEEEEECTT-CEEEEEEEECCSSSCCEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEE-ecccEEEcceEEEEEEec-ceeEEEEEEccCCCCCce
Confidence            589999999999999988888999999999999888887765 899999999999998764 789999999999999999


Q ss_pred             eEEEEEeCccccccCC--ccceeEE--ee---cCCeeceEEEEEEEEEe
Q 046962           83 VGEAIIPLHSVFEAGN--VPQQAYN--VV---KDKKFQGEVRVGLTFKP  124 (161)
Q Consensus        83 iG~~~~~l~~l~~~~~--~~~~~~~--l~---~~~~~~G~i~l~l~~~~  124 (161)
                      ||++.++|.++.....  ....++.  +.   ......|+|.|.+.+..
T Consensus        83 iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          83 LGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             EEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence            9999999999865322  2223433  33   33457799999888654

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-21  Score=126.16  Aligned_cols=117  Identities=22%  Similarity=0.379  Sum_probs=94.6

Q ss_pred             CeEEEEEEEeecCCCCCC---CCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEecC
Q 046962            3 KGTLEVLLVCAKGLQDTD---FLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEGT-TALKLKIMDSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~---~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~~~   75 (161)
                      .++|+|+|++|++|+...   ..+.+||||.+.+..   ...+|++.. ++.||.|+|+|.|.+.... ..|.|+|||++
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~-~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d   80 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCT-TCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecC-CCccceeceeeeecccCcccCcEEEEEEECC
Confidence            478999999999998753   347899999999964   334555554 8999999999999997664 47999999998


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEEe
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKP  124 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~~  124 (161)
                      .. +|++||++.++|++|..+. ....||.|  .....|.|++++.+.|
T Consensus        81 ~~-~d~~lG~~~i~L~~l~~~~-~~~~~~~L--~~~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          81 YV-MDETLGTATFTVSSMKVGE-KKEVPFIF--NQVTEMVLEMSLEVAS  125 (126)
T ss_dssp             SS-CCEEEEEEEEEGGGSCTTC-EEEEEEEE--TTTEEEEEEEEEECCC
T ss_pred             CC-CCCeEEEEEEEHHHccCCC-eEEEEEEc--cCCCeEEEEEEEEEEe
Confidence            76 6899999999999997653 44679999  3445689999988765

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=5e-20  Score=119.02  Aligned_cols=116  Identities=22%  Similarity=0.449  Sum_probs=89.8

Q ss_pred             eEEEEEEEeecCCCCC--CCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEecC
Q 046962            4 GTLEVLLVCAKGLQDT--DFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEGT-TALKLKIMDSD   75 (161)
Q Consensus         4 g~l~v~i~~a~~L~~~--~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~~~   75 (161)
                      .+|.|+|++|++|+..  +..+.+||||.+.+.     ....+|+.++++++||.|+|+|.|.+.... ..|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            5799999999999754  455789999999983     455667777756789999999999887653 47999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEee-cCCe--eceEEEEEEEEE
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKK--FQGEVRVGLTFK  123 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~--~~G~i~l~l~~~  123 (161)
                      ..++|++||++.++|..+..+    .+|+.|. ..+.  ..+.|.+.+.+.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g----~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG----YRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE----EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC----CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            998999999999999998764    3678886 3333  356777777653

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=7.3e-21  Score=123.16  Aligned_cols=102  Identities=27%  Similarity=0.439  Sum_probs=86.3

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEEEeCC--CCeEEEEEEecC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEG--TTALKLKIMDSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~l~i~v~~~~   75 (161)
                      .++|.|+|++|++|+..+..+.+||||.+++.     ....+|.++. ++.||.|+|.|.|.+...  ...|.|+|||++
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d   92 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-CSLNPEWNETFRFQLKESDKDRRLSVEIWDWD   92 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCS-SCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeec-CCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence            57899999999999999998999999999983     3344555655 899999999999998654  347999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .+++|++||++.+++.++..+.  ...||.|.
T Consensus        93 ~~~~d~~iG~~~i~l~~l~~~~--~~~W~~L~  122 (132)
T d1a25a_          93 LTSRNDFMGSLSFGISELQKAG--VDGWFKLL  122 (132)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTCC--EEEEEECB
T ss_pred             CCCCCcEeEEEEEeHHHcCCCC--CCeEEECC
Confidence            9999999999999999987543  35799985

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=6.2e-20  Score=117.86  Aligned_cols=99  Identities=21%  Similarity=0.382  Sum_probs=84.5

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCce
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDF   82 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~   82 (161)
                      ++.|+|+|.+|++|...+   ..||||.+.+++...+|.+.+  +.||.|+|.|.|.+......|.|+|||++.. .|++
T Consensus         1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k--~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~   74 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR--GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTM   74 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE--SSSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEE
T ss_pred             CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec--CCCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcc
Confidence            468999999999999876   589999999998776666664  5599999999999988878999999999876 6899


Q ss_pred             eEEEEEeCccccccCC-ccceeEEee
Q 046962           83 VGEAIIPLHSVFEAGN-VPQQAYNVV  107 (161)
Q Consensus        83 iG~~~~~l~~l~~~~~-~~~~~~~l~  107 (161)
                      ||++.++|+++..... ....||.|.
T Consensus        75 lG~~~I~L~~l~~~~~~~~~~W~~L~  100 (128)
T d2cjta1          75 VGTVWIPLRTIRQSNEEGPGEWLTLD  100 (128)
T ss_dssp             EEEEEEEGGGSCBCSSCCCCEEEECB
T ss_pred             eEEEEEEehhhccCCCCCCCeeEECC
Confidence            9999999999976433 345799996

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=3.1e-20  Score=119.85  Aligned_cols=105  Identities=21%  Similarity=0.289  Sum_probs=84.6

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecC
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSD   75 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~   75 (161)
                      ..++|.|+|++|++|+..+..+.+||||++++.   ....+|++.. ++.+|.|+|+|.|.+...   ...|.|+|||++
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCC-SCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEc-CCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            357899999999999999988999999999984   3334555554 899999999999998654   347999999999


Q ss_pred             CCCCCceeEEEEEeCcc-ccccCCccceeEEee
Q 046962           76 TVSQDDFVGEAIIPLHS-VFEAGNVPQQAYNVV  107 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~-l~~~~~~~~~~~~l~  107 (161)
                      .++++++||++.+++.. +.........||.|.
T Consensus        95 ~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~  127 (130)
T d1dqva1          95 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL  127 (130)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred             CCCCCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence            99999999999998654 444333345799985

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=7.6e-20  Score=119.85  Aligned_cols=103  Identities=23%  Similarity=0.337  Sum_probs=86.1

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDT   76 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~   76 (161)
                      .++|.|+|++|++|+..+..+.+||||++.+.   ....+|++.. ++.||.|+++|.|.+...   ...|.|+|||++.
T Consensus        33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~-~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCT-TCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEec-cccCcceeeeeEEEEEeeccCCceEEEEEEEcCC
Confidence            46899999999999999988999999999983   3334555554 899999999999987543   3589999999999


Q ss_pred             CCCCceeEEEEEeCccccccCCccceeEEee
Q 046962           77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV  107 (161)
Q Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~  107 (161)
                      .+++++||++.++|.++..+.. ...||.|.
T Consensus       112 ~~~~~~iG~~~i~L~~~~~~~~-~~~W~~L~  141 (143)
T d1rsya_         112 FSKHDIIGEFKVPMNTVDFGHV-TEEWRDLQ  141 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSC-EEEEEECB
T ss_pred             CCCCcEEEEEEEEchhccCCCC-CccEEeCC
Confidence            8899999999999999976543 45899883

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.6e-20  Score=122.91  Aligned_cols=104  Identities=24%  Similarity=0.423  Sum_probs=85.0

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCee--------------eEEEEeeCCCCCCeeccEEEEEEeCC----C
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE--------------KRSSVASGQGTTPNWNENFVFTISEG----T   64 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~--------------~~t~~~~~~~~~P~w~e~~~~~~~~~----~   64 (161)
                      .|+|.|+|++|++|+..+..+.+||||++.+....              .+|++++ ++.||.|+|.|.|.....    .
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~~   95 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTH-HHHSCEEEEEEEECSCCHHHHTT
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCc-CCCCceeEEEEEEeeecccccCC
Confidence            47899999999999999998999999999984221              2344444 678999999999974332    3


Q ss_pred             CeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEeec
Q 046962           65 TALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK  108 (161)
Q Consensus        65 ~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~  108 (161)
                      ..|.|+|||++.++++++||++.++|.++..... ...||.|..
T Consensus        96 ~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~-~~~W~~L~~  138 (142)
T d1rh8a_          96 KTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-TPRWYPLKE  138 (142)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTT-CCEEEECBC
T ss_pred             CEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCC-ceEEEECcC
Confidence            5899999999999899999999999999977644 458999963

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-18  Score=110.84  Aligned_cols=102  Identities=22%  Similarity=0.449  Sum_probs=78.5

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEE-EeCC---CCeEEEEEE
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFT-ISEG---TTALKLKIM   72 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~-~~~~---~~~l~i~v~   72 (161)
                      ..++|.|+|++|++|+..+..+.+||||++.+.     ...++|++.+ ++.+|.|+|+|.|. +...   ...|.|+||
T Consensus        12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~-~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCS-SBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEc-CCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            357899999999999999888999999999983     2234455555 89999999999997 4433   347999999


Q ss_pred             ecCCCC--CCceeEEEEEeCccccccCCccceeEEe
Q 046962           73 DSDTVS--QDDFVGEAIIPLHSVFEAGNVPQQAYNV  106 (161)
Q Consensus        73 ~~~~~~--~d~~iG~~~~~l~~l~~~~~~~~~~~~l  106 (161)
                      |.+.++  ++++||++.++|+++.....  ..||.|
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~~~--~~Wy~L  124 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLDDE--PHWYKL  124 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSC--EEEEEC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCCCC--CEEEeC
Confidence            998653  45699999999999876543  579987

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.3e-18  Score=111.26  Aligned_cols=101  Identities=22%  Similarity=0.249  Sum_probs=81.9

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~   75 (161)
                      .++|.|+|++|++|+..   +.+||||++.+...    .++|++. +++.+|.|+|.|.|.+...   ...|.|+||+++
T Consensus        25 ~~~L~V~v~~a~~L~~~---g~~dpyVkv~l~~~~~~~~~kT~v~-~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~  100 (138)
T d1wfma_          25 KAELFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEAQTALK-KRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTEEEEEEEEEECCCCS---SCCCEEEEEEEEETTEEEEEECCCC-CCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCEEEEEEEEcCCCCCC---CCcCcEEEEEECCCCCccceeeeEE-CCCCCceEeeeEEEEeeehhccceEEEEEEeeec
Confidence            57899999999999543   67899999998432    2344444 4899999999999998664   357999999999


Q ss_pred             CCCCCceeEEEEEeCccccccCCccceeEEeec
Q 046962           76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK  108 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~  108 (161)
                      .++++++||++.++|.++..... ...|+.|..
T Consensus       101 ~~~~~~~iG~~~i~L~~l~~~~~-~~~W~~L~~  132 (138)
T d1wfma_         101 RFSRHSVAGELRLGLDGTSVPLG-AAQWGELKT  132 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSSCTT-CCEEEECCC
T ss_pred             ccccceeeeEEEEEhHHccCCCC-ceEeEeCCC
Confidence            99999999999999999876533 468999964

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.5e-18  Score=110.62  Aligned_cols=95  Identities=28%  Similarity=0.462  Sum_probs=77.1

Q ss_pred             CeEEEEEEEeecCCCCCCCCCC-CCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEE-EeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSN-MDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFT-ISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~-~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~-~~~~---~~~l~i~v~~~   74 (161)
                      .+.|.|+|++|++|+..+..+. +||||.+.+.   ....+|++.. ++.||.|+|+|.|. +...   ...|.|+|||.
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~   99 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCS-SCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEe-CCCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence            4689999999999999877654 7999999983   3344555554 89999999999997 4333   24799999999


Q ss_pred             CCCCCCceeEEEEEeCccccccCC
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGN   98 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~   98 (161)
                      +.++++++||++.++|.++.....
T Consensus       100 d~~~~~~~iG~~~i~L~~~~~~~~  123 (138)
T d1ugka_         100 DRFSRDDIIGEVLIPLSGIELSEG  123 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCCTTC
T ss_pred             CCCCCCcEEEEEEEEcccccCCCC
Confidence            999899999999999999865433

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=3.6e-18  Score=111.10  Aligned_cols=90  Identities=24%  Similarity=0.416  Sum_probs=69.4

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc--Ce---eeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR--TQ---EKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~--~~---~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~~   74 (161)
                      .++|.|+|++|++|+..+..+.+||||++.+.  ..   ..+|++. +++.||.|+|+|.|.+....   ..|.|+|||.
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~-~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~   92 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVK-KCTPNAVFNELFVFDIPCESLEEISVEFLVLDS   92 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCC-CSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeE-CCCCCCeECcEEEEEecHHHhCccEEEEEEEeC
Confidence            47899999999999999988899999999983  22   2234444 48899999999999986552   3699999999


Q ss_pred             CCCCCCceeEEEEEeCccc
Q 046962           75 DTVSQDDFVGEAIIPLHSV   93 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l   93 (161)
                      +.++++++||++.+++...
T Consensus        93 ~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          93 ERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             CTTSCCEEEEEEEESTTCC
T ss_pred             CCCCCCCEEEEEEEcchhC
Confidence            9998999999999998753

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.1e-17  Score=106.69  Aligned_cols=108  Identities=15%  Similarity=0.230  Sum_probs=82.4

Q ss_pred             EEEEEEeecCCCCCCCCCCCCcEEEEEEcCe----eeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCc
Q 046962            6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ----EKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDD   81 (161)
Q Consensus         6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~----~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~   81 (161)
                      +.|.+..+..++.  ..+.+||||.+.+...    ..+++..+++++||+|||+|.|.+... ..|.|.||+++    ++
T Consensus         7 ~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~-~~l~i~V~d~d----d~   79 (123)
T d1bdya_           7 ISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAA----ED   79 (123)
T ss_dssp             EEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT-CEEEEEEEEET----TE
T ss_pred             EEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc-cEEEEEEEEcc----cc
Confidence            3444444444433  3578999999999543    234555556999999999999999764 78999999976    67


Q ss_pred             eeEEEEEeCccccc----cCCccceeEEeecCCeeceEEEEEEEEEe
Q 046962           82 FVGEAIIPLHSVFE----AGNVPQQAYNVVKDKKFQGEVRVGLTFKP  124 (161)
Q Consensus        82 ~iG~~~~~l~~l~~----~~~~~~~~~~l~~~~~~~G~i~l~l~~~~  124 (161)
                      ++|.+.+.+.+|..    .+.....|+.|    ++.|+|+++++|..
T Consensus        80 ~~g~~~i~l~~l~~~~~~~~~~~~~W~~L----~~~Gkl~l~v~~f~  122 (123)
T d1bdya_          80 PMSEVTVGVSVLAERCKKNNGKAEFWLDL----QPQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEHHHHHHHHHTTTTEEEEEEEC----BSSCEEEEEEEEEE
T ss_pred             ccCccEEehhheeeccccCCCcccEEEeC----CCCEEEEEEEEEec
Confidence            99999999998854    23345579988    67899999999985

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=7.8e-18  Score=111.76  Aligned_cols=105  Identities=22%  Similarity=0.380  Sum_probs=83.3

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecC
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSD   75 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~   75 (161)
                      .++|.|.|++|++|+..+..+.+||||.+.+...    ..+++.+.+++.||.|+++|.|.+...   ...|.|+||+.+
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~  103 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccC
Confidence            5799999999999999988899999999998531    122344445899999999999998765   247999999999


Q ss_pred             CCCCCceeEEEEEeCccc----------cc-cCCccceeEEee
Q 046962           76 TVSQDDFVGEAIIPLHSV----------FE-AGNVPQQAYNVV  107 (161)
Q Consensus        76 ~~~~d~~iG~~~~~l~~l----------~~-~~~~~~~~~~l~  107 (161)
                      .++++++||++.+++...          .. ......+|+.|.
T Consensus       104 ~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~  146 (157)
T d1uowa_         104 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ  146 (157)
T ss_dssp             SSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             CCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCC
Confidence            999999999999999653          22 122235799885

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.4e-17  Score=108.00  Aligned_cols=92  Identities=21%  Similarity=0.390  Sum_probs=77.0

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962            2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD   73 (161)
Q Consensus         2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~   73 (161)
                      ..++|.|.|++|++|+..+..+.+||||.+.+..     ...+|++.+ ++.+|.|+|+|.|.+...   ...|.|.||+
T Consensus        13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK-KTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCC-SCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEc-CCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            3578999999999999988888999999999832     223455554 899999999999998654   3479999999


Q ss_pred             cCCCCCCceeEEEEEeCcccc
Q 046962           74 SDTVSQDDFVGEAIIPLHSVF   94 (161)
Q Consensus        74 ~~~~~~d~~iG~~~~~l~~l~   94 (161)
                      .+..+++++||++.+++.++.
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKG  112 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCH
T ss_pred             CCCCCCCCEEEEEEeCccccC
Confidence            999889999999999998754

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2e-17  Score=108.33  Aligned_cols=91  Identities=23%  Similarity=0.445  Sum_probs=76.3

Q ss_pred             CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962            3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS   74 (161)
Q Consensus         3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~   74 (161)
                      .|+|.|+|++|++|+..+..+.+||||.+.+...     ..+|+++ +++.||.|+|.|.|.+...   ...|.|.||+.
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~-~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~   97 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK-KNTLNPTYNEALVFDVAPESVENVGLSIAVVDY   97 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCC-CSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEE-eCCCCceecceEEEEEehhhcCCCEEEEEEEec
Confidence            5899999999999999888888999999998532     2344445 4899999999999987654   34799999999


Q ss_pred             CCCCCCceeEEEEEeCcccc
Q 046962           75 DTVSQDDFVGEAIIPLHSVF   94 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~   94 (161)
                      +..+++++||++.++++.+.
T Consensus        98 ~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          98 DCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             CSSSCCEEEEECCCSSCTTC
T ss_pred             CCCCCCcEEEEEEECchHcC
Confidence            99999999999999998764

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.6e-14  Score=89.41  Aligned_cols=106  Identities=21%  Similarity=0.394  Sum_probs=74.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCcEEEEEEc------CeeeEE-EEeeCCCCCCeeccE-EEEE-EeCCC-CeEEEEEEec
Q 046962            5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCR------TQEKRS-SVASGQGTTPNWNEN-FVFT-ISEGT-TALKLKIMDS   74 (161)
Q Consensus         5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~------~~~~~t-~~~~~~~~~P~w~e~-~~~~-~~~~~-~~l~i~v~~~   74 (161)
                      +|.|+|++|++|+..    ..||||+|.+.      ....++ +.+.++++||.|+++ |.+. +..+. ..|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999765    48999999983      122333 344557899999865 4443 44433 3799999997


Q ss_pred             CCCCCCceeEEEEEeCccccccCCccceeEEee-cCCe--eceEEEEEEEE
Q 046962           75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKK--FQGEVRVGLTF  122 (161)
Q Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~--~~G~i~l~l~~  122 (161)
                      +    +++||++.+|++.|..+    -++..|. ..++  ..+.|.+.+.+
T Consensus        78 d----~~~lG~~~ipl~~l~~G----yR~vpL~~~~g~~l~~~~L~v~i~~  120 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG----YHHLCLHSESNMPLTMPALFIFLEM  120 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE----EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred             C----CCEEEEEEEEcccCcCC----ceEEEccCCCcCCCCCceEEEEEEE
Confidence            5    78999999999999775    3566665 3333  33455555543

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.15  Score=31.43  Aligned_cols=116  Identities=9%  Similarity=0.133  Sum_probs=74.6

Q ss_pred             eEEEEEEEeecCCC----CCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC--------CCeEEEEE
Q 046962            4 GTLEVLLVCAKGLQ----DTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG--------TTALKLKI   71 (161)
Q Consensus         4 g~l~v~i~~a~~L~----~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------~~~l~i~v   71 (161)
                      +.+.|.|.++.--+    ..+ ...+..||.+.+-.....++.+. ...+|.+|-+-.+.+..+        ...+.+++
T Consensus        10 nlfEihi~~~~~s~e~l~~~~-d~~p~tF~T~~Fyd~Etq~TPv~-~g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~lel   87 (142)
T d2yrba1          10 NLFEIHINKVTFSSEVLQASG-DKEPVTFCTYAFYDFELQTTPVV-RGLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEV   87 (142)
T ss_dssp             EEEEEEEEEECCCHHHHHHHC-SSCCEEEEEECSTTCCCEECCCE-ESSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEE
T ss_pred             cEEEEEEeeEEEcHHHHhhcc-CCCCcEEEEEEEEeeeeecCcee-cCCCCcceeEEEEEEccCHHHHHHHhhCCEEEEE
Confidence            34666666652111    111 24577899998876666666665 678999997777777665        35789999


Q ss_pred             EecCCCCCCceeEEEEEeCccccccCCccceeEEee-cCCe--eceEEEEEEEE
Q 046962           72 MDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKK--FQGEVRVGLTF  122 (161)
Q Consensus        72 ~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~--~~G~i~l~l~~  122 (161)
                      |..... .-..+|.+++.+.++..........-.|. ..+.  .-|.|..-+++
T Consensus        88 hqa~g~-~~~tvA~g~i~l~~lLd~~~r~~~s~~l~g~~~~~~~~G~leyw~rl  140 (142)
T d2yrba1          88 HQAYST-EYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRL  140 (142)
T ss_dssp             EEECSS-CEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEE
T ss_pred             EeecCC-CcceeEEEEEEhhHhhCccccccceeEEEccCCCcceEEEEEEEEEE
Confidence            987743 34579999999999887544333333444 2222  46777655543