Citrus Sinensis ID: 047018

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MASAYFTMLLICFRLSITTVLAHPKQIPLDASKLEAWIGENMREFTERKAQLAQGKNDTVVDHVLAAAEDGFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTALHFGTVNSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLGVITAQAREQVNDDSGFTFVHCNITGSGDTYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLPNL
ccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHcccccEEEEccccccccccHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEccccccEEEEccccccccccccEEEEEEcccEEEEccEEEEcccccccccccccEEEEEEEccEEEEEEEEEEEccccEEcccccEEEEccEEEEEccEEEcccEEEEEccEEEEEccccEEEEEccccccccccEEEEEccEEEEccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHcccccccEEcccccccccccc
cccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEcccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEEEccccccccEEEEEEEEEEcccEEEEEEEEEcccccccccccccccEEEccccccEEEEEEEEEcccccEEEcccEEEEEccEEEEcEEEEEEccEEEEEccEEEEccccccEEEEccccccccccEEEEEEcEHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHcccccccccEEccHHHHHHccHHHHHcccccccccccc
MASAYFTMLLICFRLSittvlahpkqipldasKLEAWIGENMREFTERKAQLAQGKNDTVVDHVLAAAEDGFRVITVrkdgrgdfktVTDAvksipsgntrRVVVKIGGGEYWEKITVERSKDFvtffgdpfdmpkivfngtalhfgtvnsatVAVESDYFVAANvafvnsapmpdgkrlGAQAVAMRISgdkaafhnckfigyqdtlcddkgrhffkdcyiqGTVDFIFGNGKSLYLRTTIVSVANGLGVITAQAReqvnddsgftfvhcnitgsgdtylgrawkerPRVLFAYTYMGTlinsqgwaagehsqshktvyygeykcmgpgasssgRVKFAKLLSEaeakpflsmtylngnkwllplpnl
MASAYFTMLLICFRLSITTVLAHPKQIPLDASKLEAWIGENMREFTERKAQLAQGKNDTVVDHVLAAaedgfrvitvrkdgrgdfktvtdavksipsgntrrvvvKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTALHFGTVNSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLGVITAQAREQVNDDSGFTFVHCNItgsgdtylgraWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVKFAKLLSEAEAKpflsmtylngnkwllplpnl
MASAYFTMLLICFRLSITTVLAHPKQIPLDASKLEAWIGENMREFTERKAQLAQGKNDTVVDHVLAAAEDGFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTALHFGTVNSATVAVESDYfvaanvafvnSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLGVITAQAREQVNDDSGFTFVHCNITGSGDTYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLPNL
***AYFTMLLICFRLSITTVLAHPKQIPLDASKLEAWIGENMREFTERKAQLAQGKNDTVVDHVLAAAEDGFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTALHFGTVNSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLGVITAQAREQVNDDSGFTFVHCNITGSGDTYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPG*****RVKFAKLLSEAEAKPFLSMTYLNGNKWLLP****
****YFT*LLICFRLSITT*****************WIGENMR*****************VDHVLAAAEDGFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTALHFGTVNSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLGVITAQAREQVNDDSGFTFVHCNITGSGDTYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLP**
MASAYFTMLLICFRLSITTVLAHPKQIPLDASKLEAWIGENMREFTERKAQLAQGKNDTVVDHVLAAAEDGFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTALHFGTVNSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLGVITAQAREQVNDDSGFTFVHCNITGSGDTYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLPNL
*****FTMLLICFRLSITTVL************LEA********************************EDGFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTALHFGTVNSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLGVITAQAREQVNDDSGFTFVHCNITGSGDTYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLPN*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASAYFTMLLICFRLSITTVLAHPKQIPLDASKLEAWIGENMREFTERKAQLAQGKNDTVVDHVLAAAEDGFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTALHFGTVNSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLGVITAQAREQVNDDSGFTFVHCNITGSGDTYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLPNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query369 2.2.26 [Sep-21-2011]
Q84WM7361 Pectinesterase PPME1 OS=A yes no 0.899 0.919 0.491 6e-99
Q9FKF3338 Putative pectinesterase 6 no no 0.794 0.866 0.554 1e-98
Q9LY19361 Probable pectinesterase 4 yes no 0.962 0.983 0.475 4e-98
Q9LY17361 Probable pectinesterase 5 no no 0.956 0.977 0.441 2e-92
B2VPR8364 Pectinesterase 2 OS=Olea N/A no 0.953 0.967 0.470 8e-92
D8VPP5364 Pectinesterase 1 OS=Olea N/A no 0.953 0.967 0.467 4e-91
Q9LY18361 Probable pectinesterase 4 no no 0.943 0.963 0.451 2e-90
Q8VYZ3383 Probable pectinesterase 5 no no 0.775 0.746 0.460 4e-73
Q8LPF3362 Probable pectinesterase 6 no no 0.799 0.814 0.432 1e-69
Q9ZQA3407 Probable pectinesterase 1 no no 0.785 0.712 0.449 1e-68
>sp|Q84WM7|PPME1_ARATH Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1 Back     alignment and function desciption
 Score =  361 bits (926), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 169/344 (49%), Positives = 234/344 (68%), Gaps = 12/344 (3%)

Query: 27  IPLDASKLEAWIGENMREFTERKAQLAQGKNDTVVDHVLAAAEDGFRVITVRKDGRGDFK 86
           IP    ++  W   N+    +RK           +D  L AAE   R+I V   G G+FK
Sbjct: 29  IPEGKPQVAQWFNANVGPLAQRKG----------LDPALVAAEAAPRIINVNPKG-GEFK 77

Query: 87  TVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTALHF 146
           T+TDA+KS+P+GNT+RV++K+  GEY EK+T++R+K F+T  G P  MP I ++GTA  +
Sbjct: 78  TLTDAIKSVPAGNTKRVIIKMAPGEYKEKVTIDRNKPFITLMGQPNAMPVITYDGTAAKY 137

Query: 147 GTVNSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQD 206
           GTV+SA++ + SDYF+A N+   N+AP PDGK  GAQA++MRISG+ AAF+NCKF G+QD
Sbjct: 138 GTVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQD 197

Query: 207 TLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLGVITAQAREQVNDDSGF 266
           T+CDD G HFFKDCY++GT DFIFG+G S+YL T +  V +G+ VI A A +   + SG+
Sbjct: 198 TICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGIRVIAAHAGKSAEEKSGY 257

Query: 267 TFVHCNITGS-GDTYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYGEYK 325
           +FVHC +TG+ G  YLGRAW   P+V++AYT M +++N  GW   +     KTV+YGEYK
Sbjct: 258 SFVHCKVTGTGGGIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYK 317

Query: 326 CMGPGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLPNL 369
           C GPG+  + RV F + + + EA  FLS+ Y+ G+KWLLP P L
Sbjct: 318 CSGPGSHKAKRVPFTQDIDDKEANRFLSLGYIQGSKWLLPPPAL 361
Acts in the modification of cell walls via demethylesterification of cell wall pectin. Involved in the pollen tube growth and determination of pollen tube morphology.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9FKF3|PME63_ARATH Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2 Back     alignment and function description
>sp|Q9LY19|PME48_ARATH Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|B2VPR8|AL11B_OLEEU Pectinesterase 2 OS=Olea europaea PE=1 SV=1 Back     alignment and function description
>sp|D8VPP5|AL11A_OLEEU Pectinesterase 1 OS=Olea europaea PE=1 SV=1 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
297738514391 unnamed protein product [Vitis vinifera] 0.986 0.930 0.689 1e-146
225444621379 PREDICTED: pectinesterase PPME1-like [Vi 0.986 0.960 0.689 1e-146
224068556375 predicted protein [Populus trichocarpa] 0.986 0.970 0.645 1e-143
449452614394 PREDICTED: probable pectinesterase 50-li 0.951 0.890 0.687 1e-140
255550327378 Pectinesterase-3 precursor, putative [Ri 0.991 0.968 0.639 1e-138
356545790347 PREDICTED: putative pectinesterase 63-li 0.785 0.835 0.701 1e-119
357479341345 Pectinesterase [Medicago truncatula] gi| 0.840 0.898 0.617 1e-111
297744956397 unnamed protein product [Vitis vinifera] 0.953 0.886 0.524 1e-110
225454938369 PREDICTED: pectinesterase PPME1 [Vitis v 0.907 0.907 0.534 1e-110
225454944393 PREDICTED: pectinesterase PPME1-like [Vi 0.953 0.895 0.524 1e-110
>gi|297738514|emb|CBI27759.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/367 (68%), Positives = 295/367 (80%), Gaps = 3/367 (0%)

Query: 4   AYFTMLLIC-FRLSITTVLA-HPKQIPLDASKLEAWIGENMREFTERKAQLAQGKNDTVV 61
           A  T+LL   F + I  V++   K IP D SKL+AWI  N+RE+ +R  +  +G + ++ 
Sbjct: 24  AVTTLLLASQFMIFIPAVVSDKTKHIPSDTSKLDAWIATNIREYRQRIWESKKGLHSSL- 82

Query: 62  DHVLAAAEDGFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERS 121
           D +L AAE    VI VRKDG GDFKT+TDA+ SIP GN +R V+ IGGGEYWEKIT++RS
Sbjct: 83  DPILVAAEAEVNVIKVRKDGTGDFKTITDALNSIPKGNLKRTVIWIGGGEYWEKITIDRS 142

Query: 122 KDFVTFFGDPFDMPKIVFNGTALHFGTVNSATVAVESDYFVAANVAFVNSAPMPDGKRLG 181
           K F+T +G   DMP I ++GTA  +GTV+SATVAVESDYF+A N+AFVNSAPMPDGKR+G
Sbjct: 143 KPFITLYGSTADMPSITYDGTAFKYGTVDSATVAVESDYFMAVNIAFVNSAPMPDGKRVG 202

Query: 182 AQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTT 241
           AQAVAMRISGDKAAFHNC FIG+QDTLCDD+GRHFFKDC IQGTVDFIFG+GKSLYL T 
Sbjct: 203 AQAVAMRISGDKAAFHNCMFIGFQDTLCDDRGRHFFKDCQIQGTVDFIFGDGKSLYLNTM 262

Query: 242 IVSVANGLGVITAQAREQVNDDSGFTFVHCNITGSGDTYLGRAWKERPRVLFAYTYMGTL 301
           I SVA G+GVITAQARE V D SGF FVHCNI+GSGDTYLGRAW+ RPRV+FAYTYMGTL
Sbjct: 263 IQSVAKGVGVITAQARENVADTSGFAFVHCNISGSGDTYLGRAWRLRPRVVFAYTYMGTL 322

Query: 302 INSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNK 361
           IN +GW+   H+   KTVYYGEY C GPGA+ SGRVKFAKLL+  EAKPFLSMTY+NGNK
Sbjct: 323 INGEGWSDNLHADRDKTVYYGEYMCEGPGATPSGRVKFAKLLTGEEAKPFLSMTYINGNK 382

Query: 362 WLLPLPN 368
           WLLP PN
Sbjct: 383 WLLPPPN 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444621|ref|XP_002277518.1| PREDICTED: pectinesterase PPME1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224068556|ref|XP_002326144.1| predicted protein [Populus trichocarpa] gi|222833337|gb|EEE71814.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449452614|ref|XP_004144054.1| PREDICTED: probable pectinesterase 50-like [Cucumis sativus] gi|449493578|ref|XP_004159358.1| PREDICTED: probable pectinesterase 50-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255550327|ref|XP_002516214.1| Pectinesterase-3 precursor, putative [Ricinus communis] gi|223544700|gb|EEF46216.1| Pectinesterase-3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356545790|ref|XP_003541318.1| PREDICTED: putative pectinesterase 63-like [Glycine max] Back     alignment and taxonomy information
>gi|357479341|ref|XP_003609956.1| Pectinesterase [Medicago truncatula] gi|355511011|gb|AES92153.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297744956|emb|CBI38548.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225454938|ref|XP_002277202.1| PREDICTED: pectinesterase PPME1 [Vitis vinifera] gi|297744954|emb|CBI38546.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225454944|ref|XP_002277388.1| PREDICTED: pectinesterase PPME1-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
TAIR|locus:2151586338 AT5G61680 [Arabidopsis thalian 0.791 0.863 0.542 2.8e-89
TAIR|locus:2196805361 PPME1 [Arabidopsis thaliana (t 0.869 0.889 0.503 5.3e-88
TAIR|locus:2183334361 AT5G07410 [Arabidopsis thalian 0.951 0.972 0.469 5.3e-88
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.956 0.977 0.435 8.2e-83
TAIR|locus:2183349361 AT5G07420 [Arabidopsis thalian 0.940 0.961 0.443 2.6e-79
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.783 0.754 0.441 3.2e-65
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.799 0.814 0.415 2.3e-62
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.818 0.906 0.418 7.9e-62
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.785 0.712 0.432 2.7e-61
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.783 0.735 0.416 9.3e-59
TAIR|locus:2151586 AT5G61680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 159/293 (54%), Positives = 215/293 (73%)

Query:    77 VRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPK 136
             V+++GRG FKT+T+A+ S+ +GNTRRV++KIG G Y EK+T++RSK F+T +G P  MP 
Sbjct:    45 VKQNGRGHFKTITEAINSVRAGNTRRVIIKIGPGVYKEKVTIDRSKPFITLYGHPNAMPV 104

Query:   137 IVFNGTALHFGTVNSATVAVESDYXXXXXXXXXXSAPMPDGKRLGAQAVAMRISGDKAAF 196
             + F+GTA  +GTV+SAT+ V SDY          SAPMPDGKR GAQA++MRISG+KAAF
Sbjct:   105 LTFDGTAAQYGTVDSATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAF 164

Query:   197 HNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLGVITAQA 256
             +NCKF GYQDT+CDD G HFFKDCYI+GT DFIFG+G+SLYL T +  V +G+ VITA A
Sbjct:   165 YNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQLNVVGDGIRVITAHA 224

Query:   257 REQVNDDSGFTFVHCNITGSGD-TYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQS 315
              +   + SG++FVHC +TG+G   YLGR+W   P+V++AYT M +++N  GW     +  
Sbjct:   225 GKSAAEKSGYSFVHCKVTGTGTGIYLGRSWMSHPKVVYAYTDMSSVVNPSGWQENREAGR 284

Query:   316 HKTVYYGEYKCMGPGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLPN 368
              KTV+YGEYKC G G+    RVK+ + + + EAK F+S+ Y+ G+ WLLP P+
Sbjct:   285 DKTVFYGEYKCTGTGSHKEKRVKYTQDIDDIEAKYFISLGYIQGSSWLLPPPS 337
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2196805 PPME1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183334 AT5G07410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84WM7PPME1_ARATH3, ., 1, ., 1, ., 1, 10.49120.89970.9196yesno
Q9LY19PME48_ARATH3, ., 1, ., 1, ., 1, 10.4750.96200.9833yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 0.0
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-113
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-98
PLN02634359 PLN02634, PLN02634, probable pectinesterase 1e-93
PLN02671359 PLN02671, PLN02671, pectinesterase 3e-92
PLN02432293 PLN02432, PLN02432, putative pectinesterase 5e-92
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-81
PLN02773317 PLN02773, PLN02773, pectinesterase 9e-78
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 1e-76
PLN02497331 PLN02497, PLN02497, probable pectinesterase 1e-74
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 3e-62
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 5e-62
PLN02176340 PLN02176, PLN02176, putative pectinesterase 3e-58
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 3e-58
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-57
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 9e-57
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 2e-55
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 3e-55
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 4e-55
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-53
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 2e-53
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 3e-53
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 3e-53
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 6e-53
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 8e-53
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-52
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 7e-52
PLN02197588 PLN02197, PLN02197, pectinesterase 5e-49
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 2e-48
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-47
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 5e-41
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-39
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 5e-36
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 4e-22
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information 
 Score =  602 bits (1554), Expect = 0.0
 Identities = 223/374 (59%), Positives = 270/374 (72%), Gaps = 14/374 (3%)

Query: 1   MASAYFTMLLICFRL---SITTVLAHPKQIPLDASKLEAWIGENMREFTERKAQLAQGKN 57
           M S       I   +   S T        IP D S+L  W   N++ + +RK  L     
Sbjct: 2   MTSIAIIACAIAALVVLVSPTVSSDDTTPIPADKSQLNQWFQANVKPYAQRKGTL----- 56

Query: 58  DTVVDHVLAAAEDGFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKIT 117
               D  L AAE   R+I VRKDG GDFKT+TDA+KSIP+GNT+RV++ IG GEY EKIT
Sbjct: 57  ----DPALEAAEAAPRIIKVRKDGSGDFKTITDAIKSIPAGNTQRVIIDIGPGEYNEKIT 112

Query: 118 VERSKDFVTFFGDPFDMPKIVFNGTALHFGTVNSATVAVESDYFVAANVAFVNSAPMPDG 177
           ++RSK FVT +G P  MP + F+GTA  +GTV SAT+ VESDYF+AAN+   NSAP PDG
Sbjct: 113 IDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIVESDYFMAANIIIKNSAPRPDG 172

Query: 178 KRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLY 237
           KR GAQAVAMRISGDKAAF+NC+FIG+QDTLCDDKGRHFFKDCYI+GTVDFIFG+GKSLY
Sbjct: 173 KRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFIFGSGKSLY 232

Query: 238 LRTTIVSVANG-LGVITAQAREQVNDDSGFTFVHCNITGSG-DTYLGRAWKERPRVLFAY 295
           L T +  V +G L VITAQAR    +DSGF+FVHC +TG+G   YLGRAW  RPRV+FAY
Sbjct: 233 LNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGRAWMSRPRVVFAY 292

Query: 296 TYMGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVKFAKLLSEAEAKPFLSMT 355
           T M +++N +GW+  +H +  KTV+YGEYKC GPGA+ SGRVKF K L + EAKPFLS+ 
Sbjct: 293 TEMSSVVNPEGWSNNKHPERDKTVFYGEYKCTGPGANPSGRVKFTKQLDDKEAKPFLSLG 352

Query: 356 YLNGNKWLLPLPNL 369
           Y+ G+KWLLP PNL
Sbjct: 353 YIEGSKWLLPPPNL 366

Length = 366
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 369
PLN02665366 pectinesterase family protein 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.4
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.64
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.49
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.26
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.25
PLN02682369 pectinesterase family protein 97.53
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.43
KOG1777 625 consensus Putative Zn-finger protein [General func 97.29
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.22
PLN02773317 pectinesterase 96.92
PLN02793443 Probable polygalacturonase 96.74
PLN02480343 Probable pectinesterase 96.56
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.33
PLN03003456 Probable polygalacturonase At3g15720 96.32
PRK10531422 acyl-CoA thioesterase; Provisional 96.31
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.29
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.1
PLN02497331 probable pectinesterase 96.08
PLN02432293 putative pectinesterase 95.99
PLN02665366 pectinesterase family protein 95.98
PLN02304379 probable pectinesterase 95.96
PLN02634359 probable pectinesterase 95.92
PLN02671359 pectinesterase 95.81
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.8
PLN02155394 polygalacturonase 95.7
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.68
PLN02176340 putative pectinesterase 95.48
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.48
PLN02218431 polygalacturonase ADPG 95.33
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.29
PLN03010409 polygalacturonase 95.29
PLN02916502 pectinesterase family protein 95.25
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.23
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.09
PLN02197588 pectinesterase 94.99
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.97
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.79
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.65
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.6
smart00656190 Amb_all Amb_all domain. 94.5
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.45
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 94.29
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.15
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 94.08
PLN02314586 pectinesterase 93.98
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.95
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.95
PLN02301548 pectinesterase/pectinesterase inhibitor 93.68
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 93.26
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 92.41
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 92.15
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.03
PLN02313587 Pectinesterase/pectinesterase inhibitor 91.68
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 91.02
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 90.94
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 90.36
PLN02188404 polygalacturonase/glycoside hydrolase family prote 86.26
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 84.87
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 84.83
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 83.12
>PLN02665 pectinesterase family protein Back     alignment and domain information 
Probab=100.00  E-value=1.5e-109  Score=821.59  Aligned_cols=354  Identities=62%  Similarity=1.075  Sum_probs=332.5

Q ss_pred             HHHHHHHhhheeeeccCCCCCCCChhHHHHHHHHhhhhhhHHHHhhhcCCCCcccchhhhhccCCCceEEEcCCCCCCcc
Q 047018            7 TMLLICFRLSITTVLAHPKQIPLDASKLEAWIGENMREFTERKAQLAQGKNDTVVDHVLAAAEDGFRVITVRKDGRGDFK   86 (369)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~i~V~~dG~G~f~   86 (369)
                      +++++.+|+++++.+.+..++|.+..++..|+..++..+..++.         ++++.|.++++.+.+|+|++||+|||+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~V~~dG~Gdf~   81 (366)
T PLN02665         11 AIAALVVLVSPTVSSDDTTPIPADKSQLNQWFQANVKPYAQRKG---------TLDPALEAAEAAPRIIKVRKDGSGDFK   81 (366)
T ss_pred             HHHHHHHHHhhhcccccccccccchhHHHHHHHHHhhhhhcccc---------ccCcchhccccCceEEEEcCCCCCCcc
Confidence            33445556778888888999999999999999999987766665         588888888777899999999999999


Q ss_pred             cHHHHHhhCcCCCcceEEEEEeccEEeeeEEeeccCccEEEecCCCCCceEEecccccccCcccceEEEEecCceEEEee
Q 047018           87 TVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTALHFGTVNSATVAVESDYFVAANV  166 (369)
Q Consensus        87 TIq~Ai~a~p~~~~~~~vI~I~~G~Y~E~V~I~~~kp~Itl~G~~~~~tvI~~~~~a~~~gt~~satv~v~a~~f~a~ni  166 (369)
                      |||+||+++|+++++|++|+|+||+|+|+|+|+++||+|||+|++.++|+|+|++++..+||++||||.|++++|+++||
T Consensus        82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v~a~~F~a~ni  161 (366)
T PLN02665         82 TITDAIKSIPAGNTQRVIIDIGPGEYNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIVESDYFMAANI  161 (366)
T ss_pred             CHHHHHhhCcccCCceEEEEEeCcEEEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEEECCCeEEEee
Confidence            99999999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             EEEeCCCCCCCCCCCCceEEEEEecCeeEEEeeEEEeccceeEeCCCcEEEEecEEeccceeEeecceeeEEEEEEEEec
Q 047018          167 AFVNSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVA  246 (369)
Q Consensus       167 t~~Nt~~~~~~~~~~~QAvAl~v~gd~~~f~nC~~~g~QDTL~~~~gr~yf~~c~I~G~VDFIfG~g~a~fe~c~i~~~~  246 (369)
                      ||+|+++.+.+...++|||||++.|||++||||+|+|||||||++.|||||+||||||+||||||+|+++||+|+|+++.
T Consensus       162 tf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~gr~yf~~CyIeG~VDFIFG~g~a~fe~C~i~s~~  241 (366)
T PLN02665        162 IIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFIFGSGKSLYLNTELHVVG  241 (366)
T ss_pred             EEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCCCCEEEEeeEEeeccceeccccceeeEccEEEEec
Confidence            99999986655556689999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-ceEEEeccccCCCCCeeEEEEcCEEeeec-cEEeeecccCCCeEEEEeccCCccccCCCCCCCCCCCCCceeEEEEe
Q 047018          247 NG-LGVITAQAREQVNDDSGFTFVHCNITGSG-DTYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYGEY  324 (369)
Q Consensus       247 ~~-~g~ItA~~r~~~~~~~G~vf~~C~itg~g-~~yLGRpW~~~srvvf~~t~m~~~I~p~GW~~w~~~~~~~~~~f~Ey  324 (369)
                      ++ .|+||||+|+++.+++||||+||+|+|++ ++||||||++|+||||++|+|+++|+|+||.+|+.++.+++++|+||
T Consensus       242 ~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGRpW~~ysrvVf~~t~m~~~I~p~GW~~w~~~~~~~t~~f~Ey  321 (366)
T PLN02665        242 DGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGRAWMSRPRVVFAYTEMSSVVNPEGWSNNKHPERDKTVFYGEY  321 (366)
T ss_pred             CCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecCCCCCcceEEEEccccCCeEccCccCCCCCCCCCCceEEEEE
Confidence            63 69999999998888999999999999988 89999999999999999999999999999999998888899999999


Q ss_pred             cccCCCCCCCCcccccccCCHHHHcCccccCeecCCCCCCCCCCC
Q 047018          325 KCMGPGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLPNL  369 (369)
Q Consensus       325 ~~~GpGa~~s~Rv~w~~~Lt~~ea~~f~~~~~i~g~~W~~~~p~~  369 (369)
                      +|+|||+++++||+|+++||++||++|+..+||+|++||+|||+|
T Consensus       322 ~~~GpGa~~s~Rv~w~~~Lt~~ea~~f~~~~fi~g~~Wl~~~~~~  366 (366)
T PLN02665        322 KCTGPGANPSGRVKFTKQLDDKEAKPFLSLGYIEGSKWLLPPPNL  366 (366)
T ss_pred             cccCCCCCccCCccccccCCHHHHHhhhHhhccCCCCcCCCCCCC
Confidence            999999999999999999999999999999999999999999986

>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 2e-40
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 5e-39
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 5e-18
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 5e-18
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 4e-17
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-13
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 151/308 (49%), Gaps = 31/308 (10%)
Query: 77  VRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPK 136
           V +DG GD++T+ +AV + P  +  R V+ +  G Y E + V  +K  +   GD      
Sbjct: 7   VAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATT 66
Query: 137 I-----VFNGTALHFGTVNSATVA-VESDYXXXXXXXXXXSAPMPDGKRLGAQAVAMRIS 190
           I     V +G+     T  SAT+A V   +          + P  D      QAVA+R+ 
Sbjct: 67  ITGSLNVVDGST----TFRSATLAAVGQGFILQDICIQNTAGPAKD------QAVALRVG 116
Query: 191 GDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANG-- 248
            D +  + C+   YQDTL     R F++D Y+ GTVDFIFGN   ++ +  +V+   G  
Sbjct: 117 ADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKY 176
Query: 249 -LGVITAQAREQVNDDSGFTFVHCNITGSGD---------TYLGRAWKERPRVLFAYTYM 298
              ++TAQ R   N  +G +   CNI  S D         TYLGR WKE  R +   +Y+
Sbjct: 177 QQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYL 236
Query: 299 GTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVK---FAKLLSEAEAKPFLSMT 355
           G LIN  GWA  +   + KT+YYGE+   GPGA +S RVK   +  +   A+A PF    
Sbjct: 237 GGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAK 296
Query: 356 YLNGNKWL 363
            + G  WL
Sbjct: 297 LIQGGSWL 304
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-126
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-125
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-104
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-101
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 8e-89
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  365 bits (940), Expect = e-126
 Identities = 105/305 (34%), Positives = 152/305 (49%), Gaps = 21/305 (6%)

Query: 75  ITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDM 134
           + V  DG GD+KTV++AV + P  +  R V++I  G Y E + V + K  + F GD    
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 135 PKIVFNGTAL-HFGTVNSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDK 193
             I  +        T NSATVA     F+A ++ F N+A          QAVA+R+  D 
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKH-----QAVALRVGSDL 123

Query: 194 AAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVA---NGLG 250
           +AF+ C  + YQD+L     R FF +C+I GTVDFIFGN   +     I +         
Sbjct: 124 SAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKN 183

Query: 251 VITAQAREQVNDDSGFTFVHCNITGSGD---------TYLGRAWKERPRVLFAYTYMGTL 301
           ++TAQ R   N ++G       I  + D         TYLGR WKE  R +   + +  +
Sbjct: 184 MVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNV 243

Query: 302 INSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVK---FAKLLSEAEAKPFLSMTYLN 358
           IN  GW   + + +  T+YYGEY+  G GA++SGRV    F  + S  EA+ F   +++ 
Sbjct: 244 INPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIA 303

Query: 359 GNKWL 363
           G  WL
Sbjct: 304 GGSWL 308
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.69
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.44
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.8
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.1
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.74
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.67
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.59
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.45
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.38
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.21
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.2
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.14
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.14
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.12
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.05
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.03
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.02
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.96
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.76
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.64
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.59
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.36
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.34
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.28
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.27
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.16
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.03
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.9
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.86
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.78
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.55
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 94.38
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 94.04
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 93.13
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 92.16
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 91.94
1vcl_A432 Hemolytic lectin CEL-III; hemolysis, hemagglutinat 91.61
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 88.17
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 87.11
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 86.53
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 86.02
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 85.93
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 84.32
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 82.46
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
Probab=100.00  E-value=4.3e-90  Score=675.15  Aligned_cols=291  Identities=35%  Similarity=0.597  Sum_probs=273.0

Q ss_pred             CCceEEEcCCCCCCcccHHHHHhhCcCCCcceEEEEEeccEEeeeEEeeccCccEEEecCCCCCceEEeccccc-ccCcc
Q 047018           71 GFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTAL-HFGTV  149 (369)
Q Consensus        71 ~~~~i~V~~dG~G~f~TIq~Ai~a~p~~~~~~~vI~I~~G~Y~E~V~I~~~kp~Itl~G~~~~~tvI~~~~~a~-~~gt~  149 (369)
                      .+.+|+|++||+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|||+|++.++|+|++++... ..+|+
T Consensus         5 ~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~   84 (319)
T 1gq8_A            5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTF   84 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTG
T ss_pred             ccceEEECCCCCCCccCHHHHHHhccccCCceEEEEEcCCeEeeeeeccCCCccEEEEEcCCCccEEEecccccCCCCcc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999987643 36788


Q ss_pred             cceEEEEecCceEEEeeEEEeCCCCCCCCCCCCceEEEEEecCeeEEEeeEEEeccceeEeCCCcEEEEecEEeccceeE
Q 047018          150 NSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFI  229 (369)
Q Consensus       150 ~satv~v~a~~f~a~nit~~Nt~~~~~~~~~~~QAvAl~v~gd~~~f~nC~~~g~QDTL~~~~gr~yf~~c~I~G~VDFI  229 (369)
                      .++||.|.+++|+++||||+|++..     .++||+||++.+|+++||||+|+|+|||||++.+||||++|+|+|+||||
T Consensus        85 ~satv~v~a~~f~~~nlt~~Nt~g~-----~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFI  159 (319)
T 1gq8_A           85 NSATVAAVGAGFLARDITFQNTAGA-----AKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFI  159 (319)
T ss_dssp             GGCSEEECSTTCEEEEEEEEECCCG-----GGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCE
T ss_pred             ceEEEEEECCCEEEEEeEeEccCCC-----cCCceEEEEecCCcEEEEEeEECccceeeeecCccEEEEecEEEeeeeEE
Confidence            9999999999999999999999841     34899999999999999999999999999999999999999999999999


Q ss_pred             eecceeeEEEEEEEEecC---CceEEEeccccCCCCCeeEEEEcCEEeeec---------cEEeeecccCCCeEEEEecc
Q 047018          230 FGNGKSLYLRTTIVSVAN---GLGVITAQAREQVNDDSGFTFVHCNITGSG---------DTYLGRAWKERPRVLFAYTY  297 (369)
Q Consensus       230 fG~g~a~fe~c~i~~~~~---~~g~ItA~~r~~~~~~~G~vf~~C~itg~g---------~~yLGRpW~~~srvvf~~t~  297 (369)
                      ||+|.++||+|+|+++++   +.++||||+|.++.+++||||+||+|++++         ++||||||++|+||||++|+
T Consensus       160 fG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~  239 (319)
T 1gq8_A          160 FGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSS  239 (319)
T ss_dssp             EESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCE
T ss_pred             ecCCcEEEEeeEEEEecCCCCCceEEEeCCCCCCCCCceEEEECCEEecCCCccccccceeEEecccCCCcceEEEEecc
Confidence            999999999999999874   468999999999999999999999999865         68999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCceeEEEEecccCCCCCCCCcccccc--cCC-HHHHcCccccCeecCCCCCCCC
Q 047018          298 MGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVKFAK--LLS-EAEAKPFLSMTYLNGNKWLLPL  366 (369)
Q Consensus       298 m~~~I~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~s~Rv~w~~--~Lt-~~ea~~f~~~~~i~g~~W~~~~  366 (369)
                      |+++|+|+||.+|+.+.+.++++|+||+|+|||+++++||+|++  +|+ ++||++|+..+||+|++|+|+.
T Consensus       240 ~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~  311 (319)
T 1gq8_A          240 ITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKAT  311 (319)
T ss_dssp             ECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGG
T ss_pred             CCCcccccccCcCCCCCCCCeeEEEEEccccCCCCcccccccccccccCCHHHHHhhhHHhhcCCCCCcCCC
Confidence            99999999999998877789999999999999999999999996  674 6899999999999999999853
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 369
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-106
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 3e-76
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  313 bits (804), Expect = e-106
 Identities = 107/305 (35%), Positives = 154/305 (50%), Gaps = 21/305 (6%)

Query: 75  ITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDM 134
           + V  DG GD+KTV++AV + P  +  R V++I  G Y E + V + K  + F GD    
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 135 PKIVFNGTAL-HFGTVNSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDK 193
             I  +        T NSATVA     F+A ++ F N+A          QAVA+R+  D 
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAA-----KHQAVALRVGSDL 123

Query: 194 AAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLG--- 250
           +AF+ C  + YQD+L     R FF +C+I GTVDFIFGN   +     I +   G G   
Sbjct: 124 SAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKN 183

Query: 251 VITAQAREQVNDDSGFTFVHCNITGSGD---------TYLGRAWKERPRVLFAYTYMGTL 301
           ++TAQ R   N ++G       I  + D         TYLGR WKE  R +   + +  +
Sbjct: 184 MVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNV 243

Query: 302 INSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVK---FAKLLSEAEAKPFLSMTYLN 358
           IN  GW   + + +  T+YYGEY+  G GA++SGRV    F  + S  EA+ F   +++ 
Sbjct: 244 INPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIA 303

Query: 359 GNKWL 363
           G  WL
Sbjct: 304 GGSWL 308
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.17
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.82
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.13
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.13
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.96
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.39
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.09
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.99
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.94
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.81
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.52
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.49
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.42
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.36
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 94.93
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 93.92
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 93.8
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 89.67
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 88.57
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 84.12
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 83.91
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 82.22
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1e-95  Score=711.13  Aligned_cols=290  Identities=36%  Similarity=0.600  Sum_probs=273.8

Q ss_pred             CCceEEEcCCCCCCcccHHHHHhhCcCCCcceEEEEEeccEEeeeEEeeccCccEEEecCCCCCceEEecccccc-cCcc
Q 047018           71 GFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNGTALH-FGTV  149 (369)
Q Consensus        71 ~~~~i~V~~dG~G~f~TIq~Ai~a~p~~~~~~~vI~I~~G~Y~E~V~I~~~kp~Itl~G~~~~~tvI~~~~~a~~-~gt~  149 (369)
                      .+.+|+|++||+|||+|||+||+++|.++++|++|+|+||+|+|+|+|+++||+|||+|++++.|+|+++..+.+ .+|.
T Consensus         5 ~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~   84 (319)
T d1gq8a_           5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTF   84 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTG
T ss_pred             CCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCccc
Confidence            456799999999999999999999999999999999999999999999999999999999999999999877643 5788


Q ss_pred             cceEEEEecCceEEEeeEEEeCCCCCCCCCCCCceEEEEEecCeeEEEeeEEEeccceeEeCCCcEEEEecEEeccceeE
Q 047018          150 NSATVAVESDYFVAANVAFVNSAPMPDGKRLGAQAVAMRISGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFI  229 (369)
Q Consensus       150 ~satv~v~a~~f~a~nit~~Nt~~~~~~~~~~~QAvAl~v~gd~~~f~nC~~~g~QDTL~~~~gr~yf~~c~I~G~VDFI  229 (369)
                      .++||.|.+++|+++||+|+|+++.     .++|||||++.+||++||||+|+|||||||++.|||||+||+|+|+||||
T Consensus        85 ~sat~~v~~~~f~a~nitf~Nt~g~-----~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFI  159 (319)
T d1gq8a_          85 NSATVAAVGAGFLARDITFQNTAGA-----AKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFI  159 (319)
T ss_dssp             GGCSEEECSTTCEEEEEEEEECCCG-----GGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCE
T ss_pred             cccceeeecCCeEEEeeEEEeCCCC-----CCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEE
Confidence            9999999999999999999999842     35899999999999999999999999999999999999999999999999


Q ss_pred             eecceeeEEEEEEEEecC---CceEEEeccccCCCCCeeEEEEcCEEeeec---------cEEeeecccCCCeEEEEecc
Q 047018          230 FGNGKSLYLRTTIVSVAN---GLGVITAQAREQVNDDSGFTFVHCNITGSG---------DTYLGRAWKERPRVLFAYTY  297 (369)
Q Consensus       230 fG~g~a~fe~c~i~~~~~---~~g~ItA~~r~~~~~~~G~vf~~C~itg~g---------~~yLGRpW~~~srvvf~~t~  297 (369)
                      ||+|+++||+|+|+++.+   +.++||||+|.++.+++||||++|+|++++         ++||||||++++||||++|+
T Consensus       160 fG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~  239 (319)
T d1gq8a_         160 FGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSS  239 (319)
T ss_dssp             EESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCE
T ss_pred             ecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecc
Confidence            999999999999999875   358999999999999999999999999874         57999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCCceeEEEEecccCCCCCCCCccccc---ccCCHHHHcCccccCeecCCCCCCC
Q 047018          298 MGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVKFA---KLLSEAEAKPFLSMTYLNGNKWLLP  365 (369)
Q Consensus       298 m~~~I~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~s~Rv~w~---~~Lt~~ea~~f~~~~~i~g~~W~~~  365 (369)
                      |+++|+|+||.+|+.+...++++|+||+|+|||+++++||+|+   ++|+++||++|+..+||+|++|||.
T Consensus       240 l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~  310 (319)
T d1gq8a_         240 ITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKA  310 (319)
T ss_dssp             ECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGG
T ss_pred             cccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCccccc
Confidence            9999999999999988888999999999999999999999997   5899999999999999999999984
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure