Citrus Sinensis ID: 047022
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 381 | 2.2.26 [Sep-21-2011] | |||||||
| P31049 | 394 | Probable fatty acid methy | no | no | 0.614 | 0.593 | 0.335 | 2e-25 | |
| P0A9H7 | 382 | Cyclopropane-fatty-acyl-p | N/A | no | 0.834 | 0.832 | 0.280 | 2e-24 | |
| P0A9H8 | 382 | Cyclopropane-fatty-acyl-p | yes | no | 0.834 | 0.832 | 0.280 | 2e-24 | |
| Q79FX6 | 287 | Cyclopropane mycolic acid | no | no | 0.645 | 0.857 | 0.279 | 2e-19 | |
| A5U029 | 287 | Cyclopropane mycolic acid | no | no | 0.645 | 0.857 | 0.279 | 2e-19 | |
| Q7U1J9 | 287 | Cyclopropane mycolic acid | no | no | 0.645 | 0.857 | 0.279 | 3e-19 | |
| Q49807 | 308 | Cyclopropane mycolic acid | no | no | 0.619 | 0.766 | 0.317 | 2e-18 | |
| P0C5C2 | 287 | Cyclopropane mycolic acid | no | no | 0.627 | 0.832 | 0.258 | 4e-17 | |
| A5U866 | 287 | Cyclopropane mycolic acid | no | no | 0.627 | 0.832 | 0.258 | 4e-17 | |
| P0A5P0 | 302 | Cyclopropane mycolic acid | no | no | 0.624 | 0.788 | 0.303 | 4e-16 |
| >sp|P31049|FAMT_PSEPU Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 127/259 (49%), Gaps = 25/259 (9%)
Query: 131 VSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLE 190
+S YD SN F+ L+LD+ M YSCA F+ L+ Q K L K++L G +L+
Sbjct: 107 ISYHYDVSNA-FYQLWLDQDMAYSCAYFREPDNTLDQAQQDKFDHLCRKLRLNAGDYLLD 165
Query: 191 IGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250
+GCGWG LA R+ K GITLS+ QLK +VK GL D D + ++ L P
Sbjct: 166 VGCGWGGLARFAAREYDAKVFGITLSKEQLKLGRQRVKAEGLTDKVD-LQILDYRDL-PQ 223
Query: 251 NMTELFLGNFSTVFICGMIEAVGHD----YMEELFSCCE--SLLAENGLSCSTVPDQCYD 304
+ G F V GM E VGH Y ++LF L+ +G++ V D
Sbjct: 224 D------GRFDKVVSVGMFEHVGHANLALYCQKLFGAVREGGLVMNHGITAKHV-----D 272
Query: 305 EHSLGPG---FIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQK 361
+G G FI Y+FP G LP L +++++ + L V +E++ HY + L W +
Sbjct: 273 GRPVGRGAGEFIDRYVFPHGELPHLSMISASICEAG-LEVVDVESLRLHYAKTLHHWSEN 331
Query: 362 FREKHSEILALGFNEKFVR 380
+ + AL EK +R
Sbjct: 332 LENQLHKAAAL-VPEKTLR 349
|
Pseudomonas putida (taxid: 303) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|P0A9H7|CFA_ECOLI Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 158/357 (44%), Gaps = 39/357 (10%)
Query: 24 GARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLNLFPIVIANQ 83
G N + +R+ NP F+ V+ E LGL +SY++G + L++F +
Sbjct: 28 GIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDR-----LDMFFSKVLRA 82
Query: 84 DLDSSTSKLKKSWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQARRHVSRLYDPSNELFF 143
L++ P L+ + F S+K + H YD N+LF
Sbjct: 83 GLENQL--------PHHFKDTLRIAGAR--LFNLQSKKRAWIVGKEH----YDLGNDLFS 128
Query: 144 FLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIV 203
+ LD M YSCA +K ++LE Q K+ ++ EK++L G VL+IGCGWG LA +
Sbjct: 129 RM-LDPFMQYSCAYWKDA-DNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMA 186
Query: 204 RQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263
G+T+S Q K A+ + + GL T I + + N F +
Sbjct: 187 SNYDVSVVGVTISAEQQKMAQERCE--GLDVT------ILLQDYRDLN------DQFDRI 232
Query: 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCL 323
GM E VG + F+ + L G+ + ++ P +I +YIFP+GCL
Sbjct: 233 VSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDP-WINKYIFPNGCL 291
Query: 324 PSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
PS+R++ A +S +E N Y L W ++F EI A ++E+F R
Sbjct: 292 PSVRQI--AQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEI-ADNYSERFKR 345
|
Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A9H8|CFA_ECOL6 Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cfa PE=3 SV=2 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 158/357 (44%), Gaps = 39/357 (10%)
Query: 24 GARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLNLFPIVIANQ 83
G N + +R+ NP F+ V+ E LGL +SY++G + L++F +
Sbjct: 28 GIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDR-----LDMFFSKVLRA 82
Query: 84 DLDSSTSKLKKSWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQARRHVSRLYDPSNELFF 143
L++ P L+ + F S+K + H YD N+LF
Sbjct: 83 GLENQL--------PHHFKDTLRIAGAR--LFNLQSKKRAWIVGKEH----YDLGNDLFS 128
Query: 144 FLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIV 203
+ LD M YSCA +K ++LE Q K+ ++ EK++L G VL+IGCGWG LA +
Sbjct: 129 RM-LDPFMQYSCAYWKDA-DNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMA 186
Query: 204 RQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263
G+T+S Q K A+ + + GL T I + + N F +
Sbjct: 187 SNYDVSVVGVTISAEQQKMAQERCE--GLDVT------ILLQDYRDLN------DQFDRI 232
Query: 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCL 323
GM E VG + F+ + L G+ + ++ P +I +YIFP+GCL
Sbjct: 233 VSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDP-WINKYIFPNGCL 291
Query: 324 PSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
PS+R++ A +S +E N Y L W ++F EI A ++E+F R
Sbjct: 292 PSVRQI--AQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEI-ADNYSERFKR 345
|
Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q79FX6|MMAA2_MYCTU Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis GN=mmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 119/272 (43%), Gaps = 26/272 (9%)
Query: 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVK 181
N LT V YD S++ FF LFLD + TYSCA F+ + LE QI K+ + + K+
Sbjct: 3 NDLTPHFEDVQAHYDLSDD-FFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLG 61
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241
L G +L+IGCGWG + Q G+TLS+ Q + + E DT V
Sbjct: 62 LQPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDE---MDTPRDRRV 118
Query: 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL----SCST 297
+ E F + G E GHD + F+ +L +G+ + +
Sbjct: 119 LLAGW-------EQFNEPVDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITG 171
Query: 298 VPDQCYDEHSLGP---------GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348
+ Q +H L P FI IFP G P++ V ++ + + ++++
Sbjct: 172 LTRQQMVDHGL-PLTLWLARFLKFIATEIFPGGQPPTIEMVEE-QSAKTGFTLTRRQSLQ 229
Query: 349 THYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
HY + L W + +E SE +A+ E + R
Sbjct: 230 PHYARTLDLWAEALQEHKSEAIAIQSEEVYER 261
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|A5U029|MMAA2_MYCTA Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 119/272 (43%), Gaps = 26/272 (9%)
Query: 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVK 181
N LT V YD S++ FF LFLD + TYSCA F+ + LE QI K+ + + K+
Sbjct: 3 NDLTPHFEDVQAHYDLSDD-FFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLG 61
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241
L G +L+IGCGWG + Q G+TLS+ Q + + E DT V
Sbjct: 62 LQPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDE---MDTPRDRRV 118
Query: 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL----SCST 297
+ E F + G E GHD + F+ +L +G+ + +
Sbjct: 119 LLAGW-------EQFNEPVDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITG 171
Query: 298 VPDQCYDEHSLGP---------GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348
+ Q +H L P FI IFP G P++ V ++ + + ++++
Sbjct: 172 LTRQQMVDHGL-PLTLWLARFLKFIATEIFPGGQPPTIEMVEE-QSAKTGFTLTRRQSLQ 229
Query: 349 THYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
HY + L W + +E SE +A+ E + R
Sbjct: 230 PHYARTLDLWAEALQEHKSEAIAIQSEEVYER 261
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q7U1J9|MMAA2_MYCBO Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 119/272 (43%), Gaps = 26/272 (9%)
Query: 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVK 181
N LT V YD S++ FF LFLD + TYSCA F+ + LE QI K+ + + K+
Sbjct: 3 NDLTPHFEDVQAHYDLSDD-FFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLG 61
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241
L G +L+IGCGWG + Q G+TLS+ Q + + E DT V
Sbjct: 62 LQPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDE---MDTPLDRRV 118
Query: 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL----SCST 297
+ E F + G E GHD + F+ +L +G+ + +
Sbjct: 119 LLAGW-------EQFNEPVDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITG 171
Query: 298 VPDQCYDEHSLGP---------GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348
+ Q +H L P FI IFP G P++ V ++ + + ++++
Sbjct: 172 LTRQQMVDHGL-PLTLWLARFLKFIATEIFPGGQPPTIEMVEE-QSAKTGFTLTRRQSLQ 229
Query: 349 THYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
HY + L W + +E SE +A+ E + R
Sbjct: 230 PHYARTLDLWAEALQEHKSEAIAIQSEEVYER 261
|
Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium bovis (taxid: 1765) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q49807|CMAS2_MYCLE Cyclopropane mycolic acid synthase 2 OS=Mycobacterium leprae (strain TN) GN=cmaA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 114/258 (44%), Gaps = 22/258 (8%)
Query: 131 VSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLE 190
V YD SNE FF L+LD SMTYSCA F+ LE Q K + + K+ L G +L+
Sbjct: 23 VQSHYDRSNE-FFKLWLDPSMTYSCAYFERPDLTLEEAQRAKRDLALSKLGLEPGMTLLD 81
Query: 191 IGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG---LQDTSDYIFVITVNCL 247
IGCGWG+ + + + G+TLS QL + ++K E T D
Sbjct: 82 IGCGWGSTMLHAIEKYDVNVIGLTLSANQLAHNKLKFAEIDHTRTDRTKDVRLQGWEQFD 141
Query: 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYD 304
+P + + LG F F G +A G + + F C +L ++G L VPD +
Sbjct: 142 EPVDRI-ISLGAFEH-FADGAGDA-GFERYDSFFKMCYDVLPDDGRMLLHTIIVPD-AKE 197
Query: 305 EHSLG---P-------GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQK 354
LG P FI IFP G LP + +V +S++ VE I +HY
Sbjct: 198 TKELGLTTPMSLLRFIKFILTEIFPGGRLPKISQV-DHYSSNAGFTVERYHRIGSHYVPT 256
Query: 355 LRRWRQKFREKHSEILAL 372
L W E +AL
Sbjct: 257 LNAWAAALEAHKDEAIAL 274
|
Catalyzes the formation of trans cyclopropanated ketomycolate or methoxymycolate through the conversion of a double bond to a cyclopropane ring at the proximal position of an oxygenated mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. In the absence of MmaA2, CmaA2 has a non-specific cis-cyclopropanating activity and is able to catalyze the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium leprae (taxid: 1769) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0C5C2|CMAS1_MYCTU Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 24/263 (9%)
Query: 130 HVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVL 189
+V YD S++ FF LFLD + TYSCA F+ L+ QI K+ + + K+ L G +L
Sbjct: 11 NVQAHYDLSDD-FFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLL 69
Query: 190 EIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249
++GCGWG + V + G+TLS+ Q + + V + + + +P
Sbjct: 70 DVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 129
Query: 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL----SCSTVPDQCYDE 305
+ + G E GH+ + FS LL +G+ + + + + E
Sbjct: 130 VD----------RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHE 179
Query: 306 HSLGPG--------FIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRR 357
L FI IFP G LPS+ V S++ V +++++ HY + L
Sbjct: 180 RGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQEC-ASANGFTVTRVQSLQPHYAKTLDL 238
Query: 358 WRQKFREKHSEILALGFNEKFVR 380
W + + +AL E + R
Sbjct: 239 WSAALQANKGQAIALQSEEVYER 261
|
Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|A5U866|CMAS1_MYCTA Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 24/263 (9%)
Query: 130 HVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVL 189
+V YD S++ FF LFLD + TYSCA F+ L+ QI K+ + + K+ L G +L
Sbjct: 11 NVQAHYDLSDD-FFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLL 69
Query: 190 EIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249
++GCGWG + V + G+TLS+ Q + + V + + + +P
Sbjct: 70 DVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 129
Query: 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL----SCSTVPDQCYDE 305
+ + G E GH+ + FS LL +G+ + + + + E
Sbjct: 130 VD----------RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHE 179
Query: 306 HSLGPG--------FIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRR 357
L FI IFP G LPS+ V S++ V +++++ HY + L
Sbjct: 180 RGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQEC-ASANGFTVTRVQSLQPHYAKTLDL 238
Query: 358 WRQKFREKHSEILALGFNEKFVR 380
W + + +AL E + R
Sbjct: 239 WSAALQANKGQAIALQSEEVYER 261
|
Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A5P0|CMAS2_MYCTU Cyclopropane mycolic acid synthase 2 OS=Mycobacterium tuberculosis GN=cmaA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 113/257 (43%), Gaps = 19/257 (7%)
Query: 135 YDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCG 194
YD SNE FF L+LD SMTYSCA F+ LE Q K + ++K+ L G +L+IGCG
Sbjct: 24 YDKSNE-FFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCG 82
Query: 195 WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254
WG+ V + G+TLSE Q + + E + +P +
Sbjct: 83 WGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRI- 141
Query: 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYDEHSLG-- 309
+ LG F F G +A G + + F +L ++G L T+PD+ + LG
Sbjct: 142 VSLGAFEH-FADGAGDA-GFERYDTFFKKFYNLTPDDGRMLLHTITIPDK-EEAQELGLT 198
Query: 310 -P-------GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQK 361
P FI IFP G LP + +V +S++ VE I +Y L W
Sbjct: 199 SPMSLLRFIKFILTEIFPGGRLPRISQV-DYYSSNAGWKVERYHRIGANYVPTLNAWADA 257
Query: 362 FREKHSEILALGFNEKF 378
+ E +AL E +
Sbjct: 258 LQAHKDEAIALKGQETY 274
|
Catalyzes the formation of trans cyclopropanated ketomycolate or methoxymycolate through the conversion of a double bond to a cyclopropane ring at the proximal position of an oxygenated mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. In the absence of MmaA2, CmaA2 has a non-specific cis-cyclopropanating activity and is able to catalyze the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 381 | ||||||
| 224107479 | 866 | predicted protein [Populus trichocarpa] | 0.942 | 0.414 | 0.604 | 1e-125 | |
| 225433227 | 865 | PREDICTED: uncharacterized protein LOC10 | 0.939 | 0.413 | 0.601 | 1e-124 | |
| 224099967 | 862 | predicted protein [Populus trichocarpa] | 0.939 | 0.415 | 0.598 | 1e-123 | |
| 359477758 | 865 | PREDICTED: uncharacterized protein LOC10 | 0.939 | 0.413 | 0.601 | 1e-123 | |
| 296083708 | 898 | unnamed protein product [Vitis vinifera] | 0.947 | 0.402 | 0.584 | 1e-122 | |
| 296083705 | 881 | unnamed protein product [Vitis vinifera] | 0.939 | 0.406 | 0.590 | 1e-121 | |
| 297831102 | 867 | hypothetical protein ARALYDRAFT_898865 [ | 0.942 | 0.414 | 0.580 | 1e-118 | |
| 50313464 | 865 | cyclopropane fatty acid synthase [Gossyp | 0.939 | 0.413 | 0.571 | 1e-117 | |
| 51970924 | 867 | unnamed protein product [Arabidopsis tha | 0.942 | 0.414 | 0.580 | 1e-117 | |
| 18086398 | 867 | AT3g23510/MEE5_5 [Arabidopsis thaliana] | 0.942 | 0.414 | 0.580 | 1e-116 |
| >gi|224107479|ref|XP_002314493.1| predicted protein [Populus trichocarpa] gi|222863533|gb|EEF00664.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/377 (60%), Positives = 284/377 (75%), Gaps = 18/377 (4%)
Query: 11 SFLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYE 70
+ LE+ G +++FEG K C+LKT+L++HNP FYW +M +ADLGLAD+YINGDFSFV K E
Sbjct: 458 TLLEDGGTVFSFEGTSKKCSLKTVLKVHNPQFYWKIMTQADLGLADAYINGDFSFVDKDE 517
Query: 71 GLLNLFPIVIANQDLDSSTSKLKKS---WGPSQNTSWLKPKKTKKYFFRHISRKNTLTQA 127
GL+NLF I+I N+D D+STSKL K W P T+ + + K+F +H+SR+NTLTQA
Sbjct: 518 GLINLFMILIVNRDADNSTSKLNKKRGWWTPLLFTAGIA---SAKFFIQHVSRQNTLTQA 574
Query: 128 RRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQE 187
RR++SR YD SNELF LFLD++MTYSCA+FK + EDL+ QIRK+S+LIEK ++ K E
Sbjct: 575 RRNISRHYDLSNELFA-LFLDETMTYSCALFKKEDEDLKAAQIRKISLLIEKARVNKDHE 633
Query: 188 VLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247
VLEIGCGWGTLAIE+V++TGCKYTGITLSE QLKYAE+KVKEAGLQD+ + + L
Sbjct: 634 VLEIGCGWGTLAIEVVQRTGCKYTGITLSEEQLKYAELKVKEAGLQDSIKF-HLCDYRQL 692
Query: 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYD 304
T+ + T+ C MIEAVGH+YMEE F CCES+LAENG L ++P++ YD
Sbjct: 693 PKTH-------KYDTIISCEMIEAVGHEYMEEFFGCCESVLAENGLFVLQFISIPEERYD 745
Query: 305 EHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFRE 364
E+ FIKEYIFP GCLPSL R+TSAM SSSRLCVEH+ENI YYQ LR WR+ F E
Sbjct: 746 EYRKSSDFIKEYIFPGGCLPSLTRITSAMASSSRLCVEHVENIGIQYYQTLRYWRKNFLE 805
Query: 365 KHSEILALGFNEKFVRT 381
EIL+LGFNEKF+RT
Sbjct: 806 NQREILSLGFNEKFIRT 822
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433227|ref|XP_002281958.1| PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/376 (60%), Positives = 282/376 (75%), Gaps = 18/376 (4%)
Query: 12 FLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEG 71
LEE G IYTFEG+RK C LK L+IHNP FYW + +ADLGLAD+YINGDFS V K EG
Sbjct: 458 LLEEGGTIYTFEGSRKKCLLKVSLKIHNPQFYWKIATQADLGLADAYINGDFSLVDKDEG 517
Query: 72 LLNLFPIVIANQDLDSSTSKLKKS---WGPSQNTSWLKPKKTKKYFFRHISRKNTLTQAR 128
L NLF I IAN+DLDSS S+L W P T+ + + +YFF+H+SR+NTLTQAR
Sbjct: 518 LQNLFMIFIANRDLDSSLSRLNNKRGWWTPLFFTAGIA---SARYFFQHVSRQNTLTQAR 574
Query: 129 RHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEV 188
R++SR YD SNELF LFLD++MTYSCA+FK++ EDL+V Q+RK+S+LIEKV++ K EV
Sbjct: 575 RNISRHYDLSNELFS-LFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKVRIDKKHEV 633
Query: 189 LEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248
LEIGCGWG+LAIE+V++TGCKYTGITLSE QLK+AE+KVKEAGLQD ++
Sbjct: 634 LEIGCGWGSLAIEVVKRTGCKYTGITLSEEQLKFAEMKVKEAGLQDNIRFLLC------D 687
Query: 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYDE 305
+++ + + + C M+EAVGH+YMEE F CCES+LAE+G L ++PD+ YDE
Sbjct: 688 YRQLSDSY--KYDRIISCEMLEAVGHEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDE 745
Query: 306 HSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREK 365
+ FIKEYIFP GCLPSL RVT+AM +SSRLC+EHLENI HYYQ LR WR+ F E
Sbjct: 746 YRRSSDFIKEYIFPGGCLPSLSRVTTAMAASSRLCMEHLENIGIHYYQTLRHWRKNFLEN 805
Query: 366 HSEILALGFNEKFVRT 381
S+I+ LGFNEKF+RT
Sbjct: 806 QSKIIELGFNEKFIRT 821
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099967|ref|XP_002311690.1| predicted protein [Populus trichocarpa] gi|222851510|gb|EEE89057.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/376 (59%), Positives = 281/376 (74%), Gaps = 18/376 (4%)
Query: 12 FLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEG 71
LEE G +++FEG K C+LKT+L++HNP FYW +M +ADLGLAD+YINGDFSFV+K EG
Sbjct: 455 LLEEGGTVFSFEGTSKKCSLKTVLKVHNPQFYWKIMTQADLGLADAYINGDFSFVNKDEG 514
Query: 72 LLNLFPIVIANQDLDSSTSKLKKS---WGPSQNTSWLKPKKTKKYFFRHISRKNTLTQAR 128
LLNLF I+I N+D + S SKL K W P T+ + + K+F +HISR+NTLTQAR
Sbjct: 515 LLNLFMILIVNRDANKSASKLNKKRGWWTPLLFTAGIA---SAKFFIQHISRQNTLTQAR 571
Query: 129 RHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEV 188
R++SR YD SNELF LFLD++MTYSC +FK++ EDL+ Q+RK+S+LIEK ++ K E+
Sbjct: 572 RNISRHYDLSNELFA-LFLDETMTYSCGVFKTEDEDLKDAQMRKISLLIEKARISKDHEI 630
Query: 189 LEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248
LEIGCGWGTLAIE V++TGCKYTGITLSE QLKYAE+KVKEAGLQD + + L
Sbjct: 631 LEIGCGWGTLAIEAVQRTGCKYTGITLSEEQLKYAEMKVKEAGLQDRIAF-HLCDYRQLP 689
Query: 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYDE 305
T+ + + C MIEAVGH+YMEE F CCES+LAENG L ++P++ YDE
Sbjct: 690 KTH-------KYDRIISCEMIEAVGHEYMEEFFGCCESVLAENGLLVLQFISIPEERYDE 742
Query: 306 HSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREK 365
+ FIKEYIFP GCLPSL R+TSAM +SSRLCVEH+ENI HYYQ L+ WR+ F EK
Sbjct: 743 YRQSSDFIKEYIFPGGCLPSLTRITSAMAASSRLCVEHVENIGIHYYQTLKYWRKNFLEK 802
Query: 366 HSEILALGFNEKFVRT 381
+ILALGFNEKF+RT
Sbjct: 803 QRKILALGFNEKFIRT 818
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477758|ref|XP_002281923.2| PREDICTED: uncharacterized protein LOC100242555 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/376 (60%), Positives = 279/376 (74%), Gaps = 18/376 (4%)
Query: 12 FLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEG 71
LEE G IYTFEG+ K C LK L+IHNP FYW V +ADLGLAD+YINGDFS V K EG
Sbjct: 458 LLEEGGTIYTFEGSGKKCLLKVALKIHNPQFYWKVATQADLGLADAYINGDFSLVDKDEG 517
Query: 72 LLNLFPIVIANQDLDSSTSKLKKS---WGPSQNTSWLKPKKTKKYFFRHISRKNTLTQAR 128
L +LF I IAN+DLDSS S+L K W P T+ + + KY+F+H+SR+NTLTQAR
Sbjct: 518 LQSLFMIFIANRDLDSSLSRLNKKRGWWTPLFFTAGIA---SAKYYFQHVSRQNTLTQAR 574
Query: 129 RHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEV 188
R+VSR YD SNELF LFLD++MTYSCA+FK++ EDL+V Q+RK+S+LIEK ++ K EV
Sbjct: 575 RNVSRHYDLSNELFS-LFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKARIDKKHEV 633
Query: 189 LEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248
LEIGCGWG+LAIE+V+QTGCKYTGIT S+ QLK+AE+KVKEAGLQD ++
Sbjct: 634 LEIGCGWGSLAIEVVKQTGCKYTGITPSKEQLKFAEMKVKEAGLQDNIRFLLCDYRQL-- 691
Query: 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYDE 305
P + + + CGM+E+VGH+YMEE F CCES+LAE+G L ++PD+ YDE
Sbjct: 692 PNSY------KYDRIISCGMLESVGHEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDE 745
Query: 306 HSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREK 365
+ FIKEYIFP GCLPSL RVT+AM ++SRLCVEHLENI HYYQ LR WR+ F E
Sbjct: 746 YRRSSDFIKEYIFPGGCLPSLSRVTTAMATASRLCVEHLENIGIHYYQTLRHWRKNFLEN 805
Query: 366 HSEILALGFNEKFVRT 381
S+I+ LGFNEKF+RT
Sbjct: 806 QSKIIELGFNEKFIRT 821
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083708|emb|CBI23697.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/383 (58%), Positives = 279/383 (72%), Gaps = 22/383 (5%)
Query: 12 FLEESGIIYTFEGARKNCTLKTILRIHNPHFYW----------NVMIEADLGLADSYING 61
LEE G IYTFEG+RK C LK L+IHNP FYW + +ADLGLAD+YING
Sbjct: 481 LLEEGGTIYTFEGSRKKCLLKVSLKIHNPQFYWKAWPFHLHSLQIATQADLGLADAYING 540
Query: 62 DFSFVHKYEGLLNLFPIVIANQDLDSSTSKLKKSWGPSQNTSWLKPKKTKKYFFRHISRK 121
DFS V K EGL NLF I IAN+DLDSS S+L G + + +YFF+H+SR+
Sbjct: 541 DFSLVDKDEGLQNLFMIFIANRDLDSSLSRLNNKRGWWTPLFFTAGIASARYFFQHVSRQ 600
Query: 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVK 181
NTLTQARR++SR YD SNELF LFLD++MTYSCA+FK++ EDL+V Q+RK+S+LIEKV+
Sbjct: 601 NTLTQARRNISRHYDLSNELFS-LFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKVR 659
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241
+ K EVLEIGCGWG+LAIE+V++TGCKYTGITLSE QLK+AE+KVKEAGLQD ++
Sbjct: 660 IDKKHEVLEIGCGWGSLAIEVVKRTGCKYTGITLSEEQLKFAEMKVKEAGLQDNIRFLLC 719
Query: 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTV 298
+++ + + + C M+EAVGH+YMEE F CCES+LAE+G L ++
Sbjct: 720 ------DYRQLSDSY--KYDRIISCEMLEAVGHEYMEEFFGCCESVLAEDGLLVLQFISI 771
Query: 299 PDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRW 358
PD+ YDE+ FIKEYIFP GCLPSL RVT+AM +SSRLC+EHLENI HYYQ LR W
Sbjct: 772 PDERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMAASSRLCMEHLENIGIHYYQTLRHW 831
Query: 359 RQKFREKHSEILALGFNEKFVRT 381
R+ F E S+I+ LGFNEKF+RT
Sbjct: 832 RKNFLENQSKIIELGFNEKFIRT 854
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083705|emb|CBI23694.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 279/381 (73%), Gaps = 23/381 (6%)
Query: 12 FLEESGIIYTFEGARKNCTLKTILRIHNPHFYWN-----VMIEADLGLADSYINGDFSFV 66
LEE G IYTFEG+ K C LK L+IHNP FYW + +ADLGLAD+YINGDFS V
Sbjct: 469 LLEEGGTIYTFEGSGKKCLLKVALKIHNPQFYWKESKKRIATQADLGLADAYINGDFSLV 528
Query: 67 HKYEGLLNLFPIVIANQDLDSSTSKLKKS---WGPSQNTSWLKPKKTKKYFFRHISRKNT 123
K EGL +LF I IAN+DLDSS S+L K W P T+ + + KY+F+H+SR+NT
Sbjct: 529 DKDEGLQSLFMIFIANRDLDSSLSRLNKKRGWWTPLFFTAGIA---SAKYYFQHVSRQNT 585
Query: 124 LTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLV 183
LTQARR+VSR YD SNELF LFLD++MTYSCA+FK++ EDL+V Q+RK+S+LIEK ++
Sbjct: 586 LTQARRNVSRHYDLSNELFS-LFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKARID 644
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT 243
K EVLEIGCGWG+LAIE+V+QTGCKYTGIT S+ QLK+AE+KVKEAGLQD ++
Sbjct: 645 KKHEVLEIGCGWGSLAIEVVKQTGCKYTGITPSKEQLKFAEMKVKEAGLQDNIRFLLCDY 704
Query: 244 VNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPD 300
P + + + CGM+E+VGH+YMEE F CCES+LAE+G L ++PD
Sbjct: 705 RQL--PNSY------KYDRIISCGMLESVGHEYMEEFFGCCESVLAEDGLLVLQFISIPD 756
Query: 301 QCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQ 360
+ YDE+ FIKEYIFP GCLPSL RVT+AM ++SRLCVEHLENI HYYQ LR WR+
Sbjct: 757 ERYDEYRRSSDFIKEYIFPGGCLPSLSRVTTAMATASRLCVEHLENIGIHYYQTLRHWRK 816
Query: 361 KFREKHSEILALGFNEKFVRT 381
F E S+I+ LGFNEKF+RT
Sbjct: 817 NFLENQSKIIELGFNEKFIRT 837
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831102|ref|XP_002883433.1| hypothetical protein ARALYDRAFT_898865 [Arabidopsis lyrata subsp. lyrata] gi|297329273|gb|EFH59692.1| hypothetical protein ARALYDRAFT_898865 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/374 (58%), Positives = 273/374 (72%), Gaps = 15/374 (4%)
Query: 11 SFLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYE 70
+ LEE G ++TFEG C LK+IL+IH+P FYW VM +ADLGLAD+YINGDFSFV K
Sbjct: 459 TILEEGGTMFTFEGKDSTCPLKSILKIHSPQFYWKVMTQADLGLADAYINGDFSFVDKDS 518
Query: 71 GLLNLFPIVIANQDLDSSTSKLKKSWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQARRH 130
GLLNL I+IAN+D S+ +K + W P T+ L + KYF +H+SR+NTLTQARR+
Sbjct: 519 GLLNLIMILIANRDTKSNLTKKRGWWTPMFLTAGLA---SAKYFLKHVSRQNTLTQARRN 575
Query: 131 VSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLE 190
+SR YD SNELF F FLD +MTYS A+F+S EDL Q+RK+S+LI+K ++ K EVLE
Sbjct: 576 ISRHYDLSNELFGF-FLDDTMTYSSAVFQSDDEDLRTAQMRKISLLIDKARIEKNHEVLE 634
Query: 191 IGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250
IGCGWGTLAIE+VR+TGCKYTGITLS QLKYAE KVKEAGLQD IT
Sbjct: 635 IGCGWGTLAIEVVRRTGCKYTGITLSIEQLKYAEEKVKEAGLQDR------ITFELRDYR 688
Query: 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYDEHS 307
+++ + + C M+EAVGH++ME FS CE+ LAENG L ++P++ Y+E+
Sbjct: 689 QLSDAH--KYDRIISCEMLEAVGHEFMEMFFSRCEAALAENGLIVLQFISIPEERYNEYR 746
Query: 308 LGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHS 367
L FIKEYIFP GCLPSL RVTSAM+SSSRLC+EH+ENI HYYQ LR WR+ F E+
Sbjct: 747 LSSDFIKEYIFPGGCLPSLARVTSAMSSSSRLCIEHVENIGIHYYQTLRVWRKNFLERQK 806
Query: 368 EILALGFNEKFVRT 381
+I+ALGF++KF+RT
Sbjct: 807 QIMALGFDDKFIRT 820
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|50313464|gb|AAT74602.1| cyclopropane fatty acid synthase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/376 (57%), Positives = 276/376 (73%), Gaps = 18/376 (4%)
Query: 12 FLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEG 71
LEE G ++TFEG C+LKT++++H+PHFYW VM EADLGLADSYINGDFSFV K +G
Sbjct: 458 LLEEGGTMFTFEGTSNKCSLKTVIKVHSPHFYWKVMTEADLGLADSYINGDFSFVDKKDG 517
Query: 72 LLNLFPIVIANQDLDSSTSKLKKS---WGPSQNTSWLKPKKTKKYFFRHISRKNTLTQAR 128
LLNL I+IAN+DL SS SKL K W P T+ L + KYFF+H+ R+NTLTQAR
Sbjct: 518 LLNLVMILIANRDLISSNSKLSKKRGWWTPLLFTAGLT---SAKYFFKHVLRQNTLTQAR 574
Query: 129 RHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEV 188
R++SR YD SN+LF LFLD++MTYSCA+FK++ EDL+ Q RK+S+LIEK ++ E+
Sbjct: 575 RNISRHYDLSNDLFA-LFLDETMTYSCAVFKTEDEDLKDAQHRKISLLIEKARIDSKHEI 633
Query: 189 LEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248
LEIGCGW +LAIE+V++TGCKYTGITLSE QLK AE +VKEAGLQ+ I
Sbjct: 634 LEIGCGWXSLAIEVVKRTGCKYTGITLSEEQLKLAEKRVKEAGLQEN------IRFQLCD 687
Query: 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYDE 305
+ + + + C MIEAVGH+YME+ F CCES+LA++G L ++P++ Y+E
Sbjct: 688 YRQLPSTY--KYDRIISCEMIEAVGHEYMEDFFGCCESVLADDGLLVLQFISIPEERYNE 745
Query: 306 HSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREK 365
+ FIKEYIFP GCLPSL R+T+AM ++S+LCVEH+ENI HYYQ LR WR+ F EK
Sbjct: 746 YRRSSDFIKEYIFPGGCLPSLARITTAMNAASKLCVEHVENIGLHYYQTLRYWRKNFLEK 805
Query: 366 HSEILALGFNEKFVRT 381
S+I ALGFN+KF+RT
Sbjct: 806 QSKIHALGFNDKFIRT 821
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|51970924|dbj|BAD44154.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/374 (58%), Positives = 271/374 (72%), Gaps = 15/374 (4%)
Query: 11 SFLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYE 70
+ LEE G ++TF G C LK+IL+IH+P FYW VM +ADLGLAD+YINGDFSFV K
Sbjct: 459 TILEEGGTMFTFGGKDSTCPLKSILKIHSPQFYWKVMTQADLGLADAYINGDFSFVDKES 518
Query: 71 GLLNLFPIVIANQDLDSSTSKLKKSWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQARRH 130
GLLNL I+IAN+D S+ SK + W P T+ L + KYF +H+SR+NTLTQARR+
Sbjct: 519 GLLNLIMILIANRDTKSNLSKKRGWWTPMFLTAGLA---SAKYFLKHVSRQNTLTQARRN 575
Query: 131 VSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLE 190
+SR YD SNELF F FLD +MTYS A+FKS EDL Q+RK+S+LI+K ++ K EVLE
Sbjct: 576 ISRHYDLSNELFGF-FLDDTMTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLE 634
Query: 191 IGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250
IGCGWGTLAIE+VR+TGCKYTGITLS QLKYAE KVKEAGLQD IT
Sbjct: 635 IGCGWGTLAIEVVRRTGCKYTGITLSIEQLKYAEEKVKEAGLQDW------ITFELRDYR 688
Query: 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYDEHS 307
+++ + + C M+EAVGH++ME FS CE+ LAENG L ++P++ Y+E+
Sbjct: 689 QLSD--AQKYDRIISCEMLEAVGHEFMEMFFSRCEAALAENGLIVLQFISIPEERYNEYR 746
Query: 308 LGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHS 367
L FIKEYIFP GCLPSL RVT+AM+SSSRLC+EH+ENI HYYQ LR WR+ F +
Sbjct: 747 LSSDFIKEYIFPGGCLPSLARVTTAMSSSSRLCIEHVENIGIHYYQTLRLWRENFLARQK 806
Query: 368 EILALGFNEKFVRT 381
+I+ALGF++KFVRT
Sbjct: 807 QIMALGFDDKFVRT 820
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18086398|gb|AAL57657.1| AT3g23510/MEE5_5 [Arabidopsis thaliana] gi|24797026|gb|AAN64525.1| At3g23510/MEE5_5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/374 (58%), Positives = 271/374 (72%), Gaps = 15/374 (4%)
Query: 11 SFLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYE 70
+ LEE G ++TF G C LK+IL+IH+P FYW VM +ADLGLAD+YINGDFSFV K
Sbjct: 459 TILEEGGTMFTFGGKDSTCPLKSILKIHSPQFYWKVMTQADLGLADAYINGDFSFVDKES 518
Query: 71 GLLNLFPIVIANQDLDSSTSKLKKSWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQARRH 130
GLLNL I+IAN+D S+ SK + W P T+ L + KYF +H+SR+NTLTQARR+
Sbjct: 519 GLLNLIMILIANRDTKSNLSKKRGWWTPMFLTAGLA---SAKYFLKHVSRQNTLTQARRN 575
Query: 131 VSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLE 190
+SR YD SNELF F FLD +MTYS A+FKS EDL Q+RK+S+LI+K ++ K EVLE
Sbjct: 576 ISRHYDLSNELFGF-FLDDTMTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLE 634
Query: 191 IGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250
IGCGWGTLAIE+VR+TGCKYTGITLS QLKYAE KVKEAGLQD IT
Sbjct: 635 IGCGWGTLAIEVVRRTGCKYTGITLSIEQLKYAEEKVKEAGLQDW------ITFELRDYR 688
Query: 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYDEHS 307
+++ + + C M+EAVGH++ME FS CE+ LAENG L ++P++ Y+E+
Sbjct: 689 QLSD--AQKYDRIISCEMLEAVGHEFMEMFFSRCEAALAENGLIVLQFISIPEERYNEYR 746
Query: 308 LGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHS 367
L FIKEYIFP GCLPSL RVT+AM+SSSRLC+EH+ENI HYYQ LR WR+ F +
Sbjct: 747 LSSDFIKEYIFPGGCLPSLARVTTAMSSSSRLCIEHVENIGIHYYQTLRLWRKNFLARQK 806
Query: 368 EILALGFNEKFVRT 381
+I+ALGF++KFVRT
Sbjct: 807 QIMALGFDDKFVRT 820
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 381 | ||||||
| TAIR|locus:2088070 | 867 | AT3G23530 [Arabidopsis thalian | 0.942 | 0.414 | 0.569 | 1.5e-106 | |
| TAIR|locus:2088712 | 867 | AT3G23510 [Arabidopsis thalian | 0.942 | 0.414 | 0.564 | 2.2e-105 | |
| TAIR|locus:2088717 | 461 | AT3G23470 [Arabidopsis thalian | 0.942 | 0.778 | 0.527 | 2.8e-98 | |
| TAIR|locus:2090915 | 305 | AT3G23460 [Arabidopsis thalian | 0.422 | 0.527 | 0.509 | 3.7e-50 | |
| DICTYBASE|DDB_G0283847 | 430 | DDB_G0283847 "cyclopropane fat | 0.666 | 0.590 | 0.4 | 2.3e-46 | |
| TIGR_CMR|GSU_2329 | 421 | GSU_2329 "cyclopropane-fatty-a | 0.664 | 0.600 | 0.359 | 7.6e-46 | |
| UNIPROTKB|Q9KSY4 | 432 | VC_1122 "Cyclopropane-fatty-ac | 0.669 | 0.590 | 0.364 | 5.3e-45 | |
| TIGR_CMR|VC_1122 | 432 | VC_1122 "cyclopropane-fatty-ac | 0.669 | 0.590 | 0.364 | 5.3e-45 | |
| TIGR_CMR|SO_3379 | 418 | SO_3379 "cyclopropane-fatty-ac | 0.692 | 0.631 | 0.323 | 1.7e-40 | |
| TIGR_CMR|CPS_1385 | 385 | CPS_1385 "cyclopropane-fatty-a | 0.698 | 0.690 | 0.335 | 2.4e-35 |
| TAIR|locus:2088070 AT3G23530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 213/374 (56%), Positives = 265/374 (70%)
Query: 11 SFLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYE 70
+ LEE G ++TF G C LK+IL+IH+P FYW VM +ADLGLAD+YINGDFSFV K
Sbjct: 459 TILEEGGTMFTFGGKDSTCPLKSILKIHSPQFYWKVMTQADLGLADAYINGDFSFVDKES 518
Query: 71 GLLNLFPIVIANQXXXXXXXXXXXXWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQARRH 130
GLLNL I+IAN+ W P T+ L + KYF +H+SR+NTLTQARR+
Sbjct: 519 GLLNLIMILIANRDTKSNLSKKRGWWTPMFLTAGLA---SAKYFLKHVSRQNTLTQARRN 575
Query: 131 VSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLE 190
+SR YD SNELF F FLD +MTYS A+FKS EDL Q+RK+S+LI+K ++ K EVLE
Sbjct: 576 ISRHYDLSNELFGF-FLDDTMTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLE 634
Query: 191 IGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250
IGCGWGTLAIE+VR+TGCKYTGITLS QLKYAE KVKEAGLQD IT
Sbjct: 635 IGCGWGTLAIEVVRRTGCKYTGITLSIEQLKYAEEKVKEAGLQDW------ITFELRDYR 688
Query: 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL---SCSTVPDQCYDEHS 307
+++ + + C M+EAVGH++ME FS CE+ LAENGL ++P++ Y+E+
Sbjct: 689 QLSDA--QKYDRIISCEMLEAVGHEFMEMFFSRCEAALAENGLIVLQFISIPEERYNEYR 746
Query: 308 LGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHS 367
L FIKEYIFP GCLPSL RVT+AM+SSSRLC+EH+ENI HYYQ LR WR+ F +
Sbjct: 747 LSSDFIKEYIFPGGCLPSLARVTTAMSSSSRLCIEHVENIGIHYYQTLRLWRKNFLARQK 806
Query: 368 EILALGFNEKFVRT 381
+I+ALGF++KFVRT
Sbjct: 807 QIMALGFDDKFVRT 820
|
|
| TAIR|locus:2088712 AT3G23510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 211/374 (56%), Positives = 264/374 (70%)
Query: 11 SFLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYE 70
+ LEE G ++TF G C LK+IL+IH+P FYW VM +ADLGLAD+YINGDFSFV K
Sbjct: 459 TILEEGGTMFTFGGKDSTCPLKSILKIHSPQFYWKVMTQADLGLADAYINGDFSFVDKES 518
Query: 71 GLLNLFPIVIANQXXXXXXXXXXXXWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQARRH 130
GLLNL I+IAN+ W P T+ L + KYF +H+SR+NTLTQARR+
Sbjct: 519 GLLNLIMILIANRDTKSNLTKKRGWWTPMFLTAGLA---SAKYFLKHVSRQNTLTQARRN 575
Query: 131 VSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLE 190
+SR YD SNELF LFLD +MTYS A+FKS EDL Q+RK+S+LI+K ++ K EVLE
Sbjct: 576 ISRHYDLSNELFG-LFLDDTMTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLE 634
Query: 191 IGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250
IGCGWGTLAIE+VR+TGCKYTGITLS QLKYAE KVKEAGLQD IT
Sbjct: 635 IGCGWGTLAIEVVRRTGCKYTGITLSIEQLKYAEEKVKEAGLQDR------ITFELRDYR 688
Query: 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS---TVPDQCYDEHS 307
+++ + + C M+EAVGH++ME FS CE+ LAE+GL + P++ Y+E+
Sbjct: 689 QLSDAH--KYDRIISCEMLEAVGHEFMEMFFSRCEAALAEDGLMVLQFISTPEERYNEYR 746
Query: 308 LGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHS 367
L FIKEYIFP C+PSL +VTSAM+SSSRLC+EH+ENI HYYQ LR WR+ F E+
Sbjct: 747 LSSDFIKEYIFPGACVPSLAKVTSAMSSSSRLCIEHVENIGIHYYQTLRLWRKNFLERQK 806
Query: 368 EILALGFNEKFVRT 381
+I+ALGF++KFVRT
Sbjct: 807 QIMALGFDDKFVRT 820
|
|
| TAIR|locus:2088717 AT3G23470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 199/377 (52%), Positives = 256/377 (67%)
Query: 11 SFLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYE 70
+ LEE G ++ F C LK+IL+IH+P FYW VM +ADLGLAD+YI+GDFSFV K
Sbjct: 48 TILEEGGTMFIFGEKDSTCPLKSILKIHSPQFYWKVMTQADLGLADAYISGDFSFVDKDS 107
Query: 71 GLLNLFPIVIANQXXXXXXXXXXXX---WGPSQNTSWLKPKKTKKYFFRHISRKNTLTQA 127
GLLNL I+IAN+ W P T+ L + KY+ +H+ ++NTLTQA
Sbjct: 108 GLLNLIMILIANRDQRSPKSNLVKKRGWWTPVFLTAGLA---SVKYYLKHVLKQNTLTQA 164
Query: 128 RRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQE 187
R+++S YD SNE FF LF+D +M YS AIFKS++ED Q+RK+S+LIEK ++ K E
Sbjct: 165 RKNISSHYDLSNE-FFGLFMDDTMMYSSAIFKSENEDPRTAQMRKISLLIEKARIEKNHE 223
Query: 188 VLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247
VLE+GCGWGT AIE+V++TGCKYTGITLS QLKYA+ KVKEAGLQ IT
Sbjct: 224 VLEMGCGWGTFAIEVVKRTGCKYTGITLSIEQLKYAKAKVKEAGLQGR------ITFMLC 277
Query: 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYD 304
+++ + + C MIEAVGH++M++ FSCCE LAENG L + +P+ YD
Sbjct: 278 DYRQLSDA--RKYDRIIACEMIEAVGHEFMDKFFSCCEDALAENGIFVLQFTAIPEALYD 335
Query: 305 EHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFRE 364
E L GFI EYIFP GCLPSL RVTSAM SSSRLC+E++ENI HYY LR WR+ F E
Sbjct: 336 ESRLTSGFITEYIFPGGCLPSLARVTSAMASSSRLCIENVENIGIHYYHTLRCWRKNFLE 395
Query: 365 KHSEILALGFNEKFVRT 381
+ +I+ LGF++KF+RT
Sbjct: 396 RQKQIIDLGFDDKFIRT 412
|
|
| TAIR|locus:2090915 AT3G23460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
Identities = 84/165 (50%), Positives = 111/165 (67%)
Query: 15 ESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLN 74
E G + TFEG C LK+ L IH+P FYW VM + DLGLAD+YINGDFSFV+K GLLN
Sbjct: 41 EGGNMVTFEGKDSRCHLKSELEIHSPQFYWKVMTQVDLGLADAYINGDFSFVNKETGLLN 100
Query: 75 LFPIVIANQXXXXXXXXXXXXWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQARRHVSRL 134
L I+IA++ W P T+ L + K+F +H+ R+N LTQARR++SR
Sbjct: 101 LIMILIASKELNSNLAEKRGRWTPIFLTTGLS---SAKHFLKHLYRQNNLTQARRNISRH 157
Query: 135 YDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEK 179
YD SNELF +FLD +M+YS +FKS E+L++ Q+RK+ +LIEK
Sbjct: 158 YDLSNELFT-IFLDDTMSYSSGVFKSDDEELKIAQMRKIYLLIEK 201
|
|
| DICTYBASE|DDB_G0283847 DDB_G0283847 "cyclopropane fatty acid synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 108/270 (40%), Positives = 155/270 (57%)
Query: 115 FRHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVS 174
F H +NT+ ++ ++ YD SN++F LFLDK+M+YSCA F + +DLE Q K+
Sbjct: 133 FVHYLHRNTIEGSKENIKAHYDLSNDMFK-LFLDKTMSYSCAYFNHREQDLEEAQYNKIR 191
Query: 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
LI++ L K +LEIGCGWG LAIE V++TGC+ TGI+LS+ QLKY +VKE GL+D
Sbjct: 192 KLIDQANLKKDHHLLEIGCGWGALAIEAVKRTGCRVTGISLSQEQLKYGRERVKEEGLED 251
Query: 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG-- 292
D ++ N + G F ++ C M+EAVG++ + F E LL NG
Sbjct: 252 RIDLQYIDYRNVV----------GQFDSIISCEMLEAVGYENYKTYFQSVERLLKPNGVL 301
Query: 293 -LSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHY 351
L T DQ ++ FI++YIFP G LPS+ V ++ T +S L +++ THY
Sbjct: 302 VLQFITFKDQDFEGLKKRCDFIQKYIFPGGLLPSITAVINSATENSNLVLQNSVTFGTHY 361
Query: 352 YQKLRRWRQKFREKHSEILAL--GFNEKFV 379
L WR F +IL L GFN++F+
Sbjct: 362 ALTLDIWRNNFFSNKEKILNLKGGFNQQFI 391
|
|
| TIGR_CMR|GSU_2329 GSU_2329 "cyclopropane-fatty-acyl-phospholipid synthase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 96/267 (35%), Positives = 141/267 (52%)
Query: 117 HISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVL 176
H NT +RR+++ YD N+ F+ LFLD +M YSC IF+ +E + K +
Sbjct: 130 HRLNDNTRRGSRRNIAAHYDLGND-FYRLFLDPTMAYSCGIFERNDSTMEEASVAKFDRI 188
Query: 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTS 236
+ L E+LEIG GWG AI GC+ T T+S Q A +++EAGL D
Sbjct: 189 CRALHLRPDMELLEIGTGWGGFAIHAAEHYGCRVTTTTISRRQFSLAAERIREAGLDDR- 247
Query: 237 DYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFS-CCESLLAEN-GL- 293
IT L + +L G F + MIEAVGH ++ F+ CC L A+ GL
Sbjct: 248 -----IT---LLQRDYRDL-TGEFDRLVSIEMIEAVGHRHLPAFFAVCCRRLKADGMGLI 298
Query: 294 SCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQ 353
TVPD+ YD + P FI YIFP GC PS + A+ +++ L + H E++ HY +
Sbjct: 299 QAITVPDRIYDRYLKTPDFINRYIFPGGCCPSPGAMARAVAAATDLRLVHREDLTPHYVR 358
Query: 354 KLRRWRQKFREKHSEILALGFNEKFVR 380
L+ WR+ F ++ + ALG +++F+R
Sbjct: 359 TLQEWRRTFHKRLDAVRALGCDDRFIR 385
|
|
| UNIPROTKB|Q9KSY4 VC_1122 "Cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 98/269 (36%), Positives = 146/269 (54%)
Query: 115 FRHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVS 174
F H ++NT+ QA+ ++ + YD NEL+ LFLD+ M YS A+F LE Q K+
Sbjct: 147 FTHWLKRNTIDQAKDNIHQHYDLGNELYQ-LFLDEEMLYSSALFTQPELSLEQAQQAKMQ 205
Query: 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
L E+++L VLEIG GWG +AI + + GCK T T+SE Q YA+ K+ GL +
Sbjct: 206 RLCEQLQLKPTDHVLEIGTGWGAMAIYMAQHYGCKVTTTTISEEQYAYAQQKITALGLNN 265
Query: 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG-- 292
IT+ LK L G + + MIEAVG Y+ S C +LL G
Sbjct: 266 Q------ITL--LKQDY--RLLSGQYDKLVSIEMIEAVGKAYLPTFLSQCYALLKPRGKM 315
Query: 293 -LSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHY 351
+ T+ DQ Y+ +S FI++YIFP G LPS+ +T T + L + +L +I Y
Sbjct: 316 AIQAITIADQRYESYSNNVDFIQKYIFPGGFLPSISVLTELATKRTGLVLRNLHDIGIDY 375
Query: 352 YQKLRRWRQKFREKHSEILALGFNEKFVR 380
L+ WR +F ++ ++ LG++E+F+R
Sbjct: 376 ALTLQHWRDRFEQQLPKVRDLGYDERFIR 404
|
|
| TIGR_CMR|VC_1122 VC_1122 "cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 98/269 (36%), Positives = 146/269 (54%)
Query: 115 FRHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVS 174
F H ++NT+ QA+ ++ + YD NEL+ LFLD+ M YS A+F LE Q K+
Sbjct: 147 FTHWLKRNTIDQAKDNIHQHYDLGNELYQ-LFLDEEMLYSSALFTQPELSLEQAQQAKMQ 205
Query: 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
L E+++L VLEIG GWG +AI + + GCK T T+SE Q YA+ K+ GL +
Sbjct: 206 RLCEQLQLKPTDHVLEIGTGWGAMAIYMAQHYGCKVTTTTISEEQYAYAQQKITALGLNN 265
Query: 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG-- 292
IT+ LK L G + + MIEAVG Y+ S C +LL G
Sbjct: 266 Q------ITL--LKQDY--RLLSGQYDKLVSIEMIEAVGKAYLPTFLSQCYALLKPRGKM 315
Query: 293 -LSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHY 351
+ T+ DQ Y+ +S FI++YIFP G LPS+ +T T + L + +L +I Y
Sbjct: 316 AIQAITIADQRYESYSNNVDFIQKYIFPGGFLPSISVLTELATKRTGLVLRNLHDIGIDY 375
Query: 352 YQKLRRWRQKFREKHSEILALGFNEKFVR 380
L+ WR +F ++ ++ LG++E+F+R
Sbjct: 376 ALTLQHWRDRFEQQLPKVRDLGYDERFIR 404
|
|
| TIGR_CMR|SO_3379 SO_3379 "cyclopropane-fatty-acyl-phospholipid synthase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 91/281 (32%), Positives = 146/281 (51%)
Query: 103 SWLKPKKTKKYFFRHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKH 162
SWL + +H+ +N+ ++R++ YD N L+ FLD+ M YS A++
Sbjct: 113 SWLTGTINR---LKHLLNRNSQQGSKRNILAHYDLGNALYE-QFLDREMLYSSALYPHSE 168
Query: 163 EDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKY 222
L Q+ K+ + E++ L GQ +LEIG GWG LAI + G T T+S+ Q Y
Sbjct: 169 ASLADAQLHKLKTICERLDLKPGQTLLEIGTGWGALAIYAAKNYGVHVTTTTISDAQYAY 228
Query: 223 AEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFS 282
A+ +V+ GL SD + ++T + N++ G + + MIEAVGH+Y+ F
Sbjct: 229 AKARVEREGL---SDSVTLLTEDY---RNLS----GQYDRLVSIEMIEAVGHEYLPGFFK 278
Query: 283 CCESLLAENG---LSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRL 339
ESLL G L T+ DQ YD + FI+ YIFP GCLPS++++ + + +
Sbjct: 279 KLESLLKPEGRMLLQAITISDQRYDSYRKSVDFIQRYIFPGGCLPSVQQMVGHLAKRTDM 338
Query: 340 CVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
V ++++ Y + L+ W F ++I LG+ E F+R
Sbjct: 339 QVWSIDDMGLDYAKTLKDWHDNFDRSVAQIQTLGYGEDFIR 379
|
|
| TIGR_CMR|CPS_1385 CPS_1385 "cyclopropane-fatty-acyl-phospholipid synthase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 95/283 (33%), Positives = 144/283 (50%)
Query: 101 NTSWLKPKKTKKYFFRHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKS 160
N SW+ K H +NT + ++R++ YD NEL+ FLD M YS AI+ +
Sbjct: 90 NKSWMNRLKNT---VSHWQNRNTQSGSKRNILAHYDLGNELYT-RFLDPDMMYSSAIYPT 145
Query: 161 KHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQL 220
+ L+ Q K++ + +++ L + +LEIG GWG LAI + GC+ T T+S+ Q
Sbjct: 146 EDASLDEAQQHKLATICQRLSLNEHDHLLEIGTGWGGLAIYAAQHYGCRVTTTTISDAQY 205
Query: 221 KYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEEL 280
YA+ ++++ GL D IT+ N+T G F V MIEAVG+D++
Sbjct: 206 AYAQARIEKLGLTDK------ITLLKEDYRNLT----GVFDKVVSIEMIEAVGYDFLPSF 255
Query: 281 FSCCESLLAENG---LSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSS 337
F C L G + T+ DQ +D + FI+ YIFP G LPS+ +T +T S
Sbjct: 256 FKQCNDRLKVGGKLLIQSITIADQRFDYYKNNVDFIQRYIFPGGFLPSVNVLTQNITDHS 315
Query: 338 RLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
L VE L++I Y + L WR+ F E+ ++E F R
Sbjct: 316 ELVVESLDDIGLDYAKTLAHWRENFLASWLELTQHDYDETFKR 358
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 381 | |||
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 6e-55 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 5e-52 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 8e-39 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-09 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-08 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 1e-04 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 2e-04 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 3e-04 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 0.001 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 0.002 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 0.002 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 6e-55
Identities = 97/277 (35%), Positives = 139/277 (50%), Gaps = 29/277 (10%)
Query: 112 KYFFRHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIR 171
+ R + +++ +A ++ YD SN+ F+ LFLD SMTYSCA F+ LE Q
Sbjct: 1 RIMLRRLLNRHSKRRAAENIQAHYDLSND-FYRLFLDPSMTYSCAYFEDPDMTLEEAQRA 59
Query: 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG 231
K+ +++EK+ L G +L+IGCGWG LAI + G G+TLSE QL YAE ++ G
Sbjct: 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARG 119
Query: 232 LQD-----TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCES 286
L+D DY F F + GM E VG + ++ F +
Sbjct: 120 LEDNVEVRLQDY---------------RDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYA 164
Query: 287 LLAENG---LSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEH 343
LL G L T PDQ E P FI +YIFP G LPS+ + S + V
Sbjct: 165 LLKPGGRMLLHSITGPDQ---EFRRFPDFIDKYIFPGGELPSISEILELA-SEAGFVVLD 220
Query: 344 LENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
+E++ HY + LR WR++F E +AL ++E+F R
Sbjct: 221 VESLRPHYARTLRLWRERFEANRDEAIAL-YDERFYR 256
|
Length = 283 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 5e-52
Identities = 85/266 (31%), Positives = 122/266 (45%), Gaps = 27/266 (10%)
Query: 124 LTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLV 183
+ ++ YD SN+ FF LFLD +MTYSCA F+ LE Q K+ ++++K+ L
Sbjct: 3 KRRDFENIQAHYDLSND-FFALFLDPTMTYSCAYFERPDMTLEEAQQAKLDLILDKLGLK 61
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT-----SDY 238
G +L+IGCGWG L + G+TLS+ Q K+A +V GLQ DY
Sbjct: 62 PGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQRVAAEGLQRKVEVLLQDY 121
Query: 239 IFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSC 295
F F + GM E VGH+ + F +LL G L
Sbjct: 122 ---------------RDFDEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLLHT 166
Query: 296 STVPD-QCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQK 354
T E L FI +YIFP G LPS+ + + S + VE +E++ HY +
Sbjct: 167 ITGLHPDETSERGLPLKFIDKYIFPGGELPSISMIVESS-SEAGFTVEDVESLRPHYAKT 225
Query: 355 LRRWRQKFREKHSEILALGFNEKFVR 380
L W + + E +AL +E+F R
Sbjct: 226 LDLWAENLQANKDEAIAL-QSEEFYR 250
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 8e-39
Identities = 102/362 (28%), Positives = 143/362 (39%), Gaps = 71/362 (19%)
Query: 35 LRIHNPHFYWNVMIEADLGLADSYING-------DFSFVHKYEGLLNLFPIVIANQDLDS 87
+++HNP F+ V+ E LGL +SY++G D F + + LD
Sbjct: 39 IQVHNPRFFKRVLQEGSLGLGESYMDGWWDCDRLD-EFFSR-----------VLRAGLDE 86
Query: 88 STSKLKKSWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQARRHVSRLYDPSNELFFFLFL 147
KL + + F S+K + H YD N+LF L
Sbjct: 87 ---KLPHHL-------KDTLRILRARLFNLQSKKRAWIVGKEH----YDLGNDLFE-AML 131
Query: 148 DKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG 207
D M YSC +K + LE Q K+ ++ K++L G VL+IGCGWG LA G
Sbjct: 132 DPRMQYSCGYWK-DADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG 190
Query: 208 CKYTGITLSELQLKYAEIKVK----EAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263
G+T+S Q K A+ + E LQD D G F +
Sbjct: 191 VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL------------------NGQFDRI 232
Query: 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSC-----STVPDQCYDEHSLGPGFIKEYIF 318
GM E VG F L +GL S D D +I +YIF
Sbjct: 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDP------WINKYIF 286
Query: 319 PSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKF 378
P+GCLPS+R++ A S +E N Y + L W + F E LA ++E+F
Sbjct: 287 PNGCLPSVRQIAQA--SEGLFVMEDWHNFGADYDRTLMAWHENF-EAAWPELADNYSERF 343
Query: 379 VR 380
R
Sbjct: 344 YR 345
|
Length = 383 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-09
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 188 VLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247
VL++GCG G LA+ + G + TG+ +S + L+ A +D + V+ +
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL----ADNVEVLKGDAE 57
Query: 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293
+ + +F + + + D LL G+
Sbjct: 58 ELPPEAD---ESFDVIISDPPLHHLVEDL-ARFLEEARRLLKPGGV 99
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 189 LEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247
L+IGCG GTL ++ G +YTG+ +S L+ A ++ GL D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRL------- 53
Query: 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293
+ +L G+F V ++ + + LL G+
Sbjct: 54 DVLDAIDLDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGV 97
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 37/110 (33%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242
G VL+IGCG G+LAIE+ R G + TG+ LS L+ A K A I
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-------I 53
Query: 243 TVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG 292
T + + L F VFI G G + EL SLL G
Sbjct: 54 TFVQGDAPDALD-LLEGFDAVFIGG-----GGGDLLELLDALASLLKPGG 97
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 19/139 (13%)
Query: 158 FKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSE 217
FK H + ++ + + + G VL++GCG G L+ + R G TGI SE
Sbjct: 34 FKPLH-KINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL-GASVTGIDASE 91
Query: 218 LQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL---GNFSTVFICGMIEAVGH 274
++ A++ E+G+ DY E G F V ++E V
Sbjct: 92 KPIEVAKLHALESGV--NIDY----------RQATVEDLASAGGQFDVVTCMEVLEHVPD 139
Query: 275 DYMEELFSCCESLLAENGL 293
E C L+ G+
Sbjct: 140 P--ESFLRACAKLVKPGGI 156
|
Length = 243 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 188 VLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
++++GCG G + + R+ G GITLS +Q A GL D
Sbjct: 122 IVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSD 168
|
Length = 340 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQD 234
LI + + G +VL++ CG G +A+ + + G + G+ +SE L+ A K+K+ G+Q+
Sbjct: 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN 102
Query: 235 TS 236
Sbjct: 103 VE 104
|
Length = 238 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTS 236
G +VL++GCG G L + + G + GI +SE ++ A+ K+ G ++
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVE 57
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 158 FKSKHE--DLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITL 215
FK H+ L + IR + + K + G VL++GCG G L+ + R G TGI
Sbjct: 19 FKPLHKMNPLRLDYIR--DTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL-GANVTGIDA 75
Query: 216 SELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD 275
SE ++ A++ K+ L +Y +V L +F V ++E V
Sbjct: 76 SEENIEVAKLHAKKDPLLKI-EYR-CTSVEDLAEKGA-----KSFDVVTCMEVLEHV--P 126
Query: 276 YMEELFSCCESLLAENGL 293
+ C LL G+
Sbjct: 127 DPQAFIRACAQLLKPGGI 144
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 189 LEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIK 226
L++GCG G LA + R+ G + TG+ LS L A +
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR 38
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 381 | |||
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 100.0 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 100.0 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 100.0 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.94 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.91 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.9 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.89 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.87 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.87 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.83 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.81 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.81 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.81 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.77 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.76 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.76 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.76 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.75 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.74 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.74 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.74 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.73 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.73 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.7 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.7 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.7 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.7 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.69 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.69 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.68 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.68 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.67 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.67 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.67 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.67 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.67 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.66 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.65 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.64 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.64 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.63 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.63 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.61 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.61 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.6 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.59 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.57 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.57 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.56 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.56 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.55 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.55 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.55 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.54 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.54 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.53 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.53 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.52 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.52 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.52 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.51 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.51 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.51 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.51 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.5 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.5 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.5 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.5 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.49 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.49 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.48 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.47 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.47 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.47 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.46 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.46 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.45 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.44 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.43 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.42 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.42 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.42 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.41 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.41 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.4 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.39 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.39 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.39 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.38 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.38 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.38 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.38 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.37 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.36 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.35 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.35 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.35 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.34 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.31 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.3 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.29 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.29 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.28 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.27 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.26 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.26 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.24 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.24 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.23 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.23 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.22 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.21 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.21 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.21 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.2 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.2 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.19 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.18 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.18 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.17 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.17 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.17 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.17 | |
| PLN02476 | 278 | O-methyltransferase | 99.17 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.16 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.14 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.14 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.14 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.11 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.11 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.1 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.1 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.09 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.08 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.08 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.08 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.06 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.05 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.04 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.03 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.02 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.01 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.99 | |
| PLN02366 | 308 | spermidine synthase | 98.98 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.97 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.95 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.95 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.94 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.94 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.92 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.92 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.91 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.9 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.9 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.9 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.89 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.87 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.87 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.86 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.86 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.85 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.84 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.84 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.82 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.8 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.79 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.79 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.78 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.78 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.78 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.74 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.74 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.72 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.72 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.68 | |
| PLN02823 | 336 | spermine synthase | 98.67 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.67 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.66 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.66 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.63 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.62 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.61 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.61 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.6 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.59 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.59 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.59 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.57 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.53 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.52 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.51 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.49 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.45 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.45 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.43 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.41 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.41 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.4 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.37 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.37 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.37 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.36 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.36 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.34 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.3 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.29 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.29 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.29 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.28 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.27 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.25 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.23 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.23 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.19 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.18 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.17 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.16 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.14 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.13 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.11 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.09 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.05 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.04 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.04 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.0 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.0 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.92 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.89 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.89 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.86 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.86 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.82 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.82 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.82 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.81 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.79 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.76 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.74 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.71 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.7 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.63 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.6 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.58 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.57 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.54 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.52 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.45 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.41 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.36 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.31 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.29 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.29 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.25 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.23 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.17 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.15 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.09 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.03 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.01 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 97.01 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.96 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.87 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.85 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.79 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.67 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.66 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.62 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.47 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.3 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.29 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.29 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 96.19 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.17 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.12 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 96.11 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.1 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 96.01 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.95 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.88 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 95.87 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 95.8 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.78 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.72 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.65 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.61 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.54 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.48 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 95.43 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.42 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 95.37 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.37 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.27 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.23 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.21 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.2 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 95.2 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 95.13 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 95.03 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 94.95 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 94.88 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 94.87 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.77 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.76 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 94.65 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 94.63 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 94.55 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 94.5 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 94.43 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 94.37 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 94.36 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 94.23 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 94.17 | |
| PHA01634 | 156 | hypothetical protein | 94.16 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 94.13 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 94.11 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 94.1 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 94.07 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 94.05 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 94.03 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 93.98 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 93.94 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 93.9 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 93.9 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 93.88 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 93.72 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 93.72 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 93.68 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.55 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 93.47 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.4 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 93.39 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 93.38 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 93.36 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 93.35 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 93.35 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 93.23 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 93.23 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 93.12 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 92.88 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 92.86 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 92.75 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 92.7 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 92.66 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 92.56 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 92.03 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 92.0 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 91.98 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 91.82 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 91.71 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 91.59 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.46 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 91.44 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 91.44 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 91.35 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 91.27 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 91.15 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 91.13 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 91.13 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 91.1 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 90.89 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 90.83 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 90.48 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 90.42 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 90.39 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 90.26 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 90.1 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 90.07 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 90.01 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 89.91 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 89.78 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 89.7 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 89.51 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 89.43 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 89.31 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 88.99 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 88.96 | |
| PF02036 | 102 | SCP2: SCP-2 sterol transfer family; InterPro: IPR0 | 88.88 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 88.65 | |
| PLN02494 | 477 | adenosylhomocysteinase | 88.65 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 88.55 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 88.41 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 88.41 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 88.07 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 88.02 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 87.88 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 87.76 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 87.66 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 87.09 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 87.08 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 86.59 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 86.46 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 86.42 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 86.34 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 86.33 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 86.26 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 86.23 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 86.19 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 86.17 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 86.05 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.0 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 85.99 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 85.74 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 85.5 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 84.87 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 84.65 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 84.41 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 84.34 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.25 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 84.24 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 84.19 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 84.04 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 83.87 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.83 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 83.5 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 83.38 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 83.34 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 83.22 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 83.06 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 82.63 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 82.38 | |
| PRK13699 | 227 | putative methylase; Provisional | 82.22 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 81.97 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 81.7 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 81.67 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 81.48 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 81.41 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 81.23 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 81.19 | |
| cd08258 | 306 | Zn_ADH4 Alcohol dehydrogenases of the MDR family. | 81.19 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 81.03 | |
| TIGR02817 | 336 | adh_fam_1 zinc-binding alcohol dehydrogenase famil | 80.95 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 80.73 | |
| cd05564 | 96 | PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic | 80.64 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 80.53 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 80.47 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 80.36 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 80.35 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 80.3 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 80.26 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 80.18 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 80.11 |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=424.02 Aligned_cols=311 Identities=28% Similarity=0.482 Sum_probs=265.4
Q ss_pred CceEEEEeChHHHHHhhhcCCcchhHhhhcCceEeccchhhHHHHHHHHHhcCCCCccccccccCCCCCCcccccccchh
Q 047022 31 LKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLNLFPIVIANQDLDSSTSKLKKSWGPSQNTSWLKPKKT 110 (381)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (381)
|+++|+|+|++++.+++.+|+||||||||+|+|++++ |.+++..++.|... .... ..+. .
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~lg~~eaY~~g~~~~~~----l~~~~~~~~~~~~~--~~~~--~~~~------------~ 94 (383)
T PRK11705 35 RPWDIQVHNPRFFKRVLQEGSLGLGESYMDGWWDCDR----LDEFFSRVLRAGLD--EKLP--HHLK------------D 94 (383)
T ss_pred CCeEEEECCHHHHHHHhccCCccHHHHHHcCCeecCC----HHHHHHHHHHccch--hhhh--hhHH------------H
Confidence 6789999999999999999999999999999999985 99999988887521 1000 0000 0
Q ss_pred hhHHh-hhhcccCChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEE
Q 047022 111 KKYFF-RHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVL 189 (381)
Q Consensus 111 ~~~~~-~~~~~~~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VL 189 (381)
....+ ....+.|++++++++|++|||++|+| |++++|++|+|||+||.. .++|++||.++++.+++++.++++.+||
T Consensus 95 ~~~~~~~~~~~~n~~~~~~~~i~~hYd~~n~~-y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVL 172 (383)
T PRK11705 95 TLRILRARLFNLQSKKRAWIVGKEHYDLGNDL-FEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVL 172 (383)
T ss_pred HHHHHHHHHhccCChhhHHHhhhhhcCCcHHH-HHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 01111 12456789999999999999999999 999999999999999975 4789999999999999999999999999
Q ss_pred EecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh
Q 047022 190 EIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI 269 (381)
Q Consensus 190 DiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l 269 (381)
|||||+|.++..++++++++|+|+|+|++|++.|+++.. ++ .+++... |+.+++ ++||.|++++++
T Consensus 173 DIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~-D~~~l~---------~~fD~Ivs~~~~ 238 (383)
T PRK11705 173 DIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQ-DYRDLN---------GQFDRIVSVGMF 238 (383)
T ss_pred EeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEEC-chhhcC---------CCCCEEEEeCch
Confidence 999999999999998778999999999999999999874 33 4888888 887664 789999999999
Q ss_pred HhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecch
Q 047022 270 EAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIET 349 (381)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~ 349 (381)
+|++..++..+++++.++|||||++++....... .......|+.+|+||++.+|+++++... .+ .||++.++++++.
T Consensus 239 ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~-~~~~~~~~i~~yifp~g~lps~~~i~~~-~~-~~~~v~d~~~~~~ 315 (383)
T PRK11705 239 EHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNK-TDTNVDPWINKYIFPNGCLPSVRQIAQA-SE-GLFVMEDWHNFGA 315 (383)
T ss_pred hhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCC-CCCCCCCCceeeecCCCcCCCHHHHHHH-HH-CCcEEEEEecChh
Confidence 9998888899999999999999998776533221 1223467999999999999999997655 43 5899999999999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHhcCCCcccccC
Q 047022 350 HYYQKLRRWRQKFREKHSEILALGFNEKFVRT 381 (381)
Q Consensus 350 ~y~~tl~~W~~~f~~~~~~~~~~g~~~~f~r~ 381 (381)
||++||+.|+++|+++++++.+ +|+++|+||
T Consensus 316 hy~~TL~~W~~~f~~~~~~~~~-~~~~~~~r~ 346 (383)
T PRK11705 316 DYDRTLMAWHENFEAAWPELAD-NYSERFYRM 346 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHH
Confidence 9999999999999999999988 699999986
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=403.14 Aligned_cols=249 Identities=36% Similarity=0.644 Sum_probs=231.1
Q ss_pred hhcccCChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCch
Q 047022 117 HISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWG 196 (381)
Q Consensus 117 ~~~~~~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G 196 (381)
++..+++.+++.++|+.|||++|+| |++|+|++|.|||+||+.++.+|++||.++++.+++++.++||++|||||||||
T Consensus 6 ~~~~~~~~~~~~~~i~~HYDl~n~f-y~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG 84 (283)
T COG2230 6 RLLNRHSKRRAAENIQAHYDLSNDF-YRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWG 84 (283)
T ss_pred cccccccccchhhhhhhHhhcchHH-HHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChh
Confidence 3445577889999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhc
Q 047022 197 TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDY 276 (381)
Q Consensus 197 ~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~ 276 (381)
.+++++|++++++|+|+|+|++|.+.+++++...|+.++++++.. |++++. +.||.|+|++|+||++.++
T Consensus 85 ~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~-d~rd~~---------e~fDrIvSvgmfEhvg~~~ 154 (283)
T COG2230 85 GLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQ-DYRDFE---------EPFDRIVSVGMFEHVGKEN 154 (283)
T ss_pred HHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEec-cccccc---------cccceeeehhhHHHhCccc
Confidence 999999999999999999999999999999999999999999999 999988 5699999999999999999
Q ss_pred HHHHHHHHHhccccCceEE---EEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecchhHHH
Q 047022 277 MEELFSCCESLLAENGLSC---STVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQ 353 (381)
Q Consensus 277 ~~~~l~~~~~~LkpgG~~~---i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~ 353 (381)
++.+|+.+.++|+|||+++ |+.+...+. ....||.+||||||.+|+++++.+... ++||.+.+.++++.||++
T Consensus 155 ~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~-~~~~~v~~~~~~~~hYa~ 230 (283)
T COG2230 155 YDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELAS-EAGFVVLDVESLRPHYAR 230 (283)
T ss_pred HHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHH-hcCcEEehHhhhcHHHHH
Confidence 9999999999999999944 344433322 568999999999999999999977655 589999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhcCCCcccccC
Q 047022 354 KLRRWRQKFREKHSEILALGFNEKFVRT 381 (381)
Q Consensus 354 tl~~W~~~f~~~~~~~~~~g~~~~f~r~ 381 (381)
|++.|+++|+++++++.++ ++|+|.||
T Consensus 231 Tl~~W~~~f~~~~~~a~~~-~~e~~~r~ 257 (283)
T COG2230 231 TLRLWRERFEANRDEAIAL-YDERFYRM 257 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 9999999999999999999 99999986
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=403.03 Aligned_cols=246 Identities=41% Similarity=0.689 Sum_probs=196.9
Q ss_pred ChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHH
Q 047022 123 TLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEI 202 (381)
Q Consensus 123 ~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l 202 (381)
++++++++|++|||++|+| |++|+|++|+|||++|++++++|++||.+|++.++++++++||++|||||||||.+++++
T Consensus 2 ~~~~~~~~i~~hYDl~ndf-y~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~ 80 (273)
T PF02353_consen 2 SKKQSRENISAHYDLGNDF-YRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYA 80 (273)
T ss_dssp -S---HHHHHHHHTS-HHH-HTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHH
T ss_pred ccchHHHHHHHHcCCcHHH-HHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHH
Confidence 5678999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHH
Q 047022 203 VRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFS 282 (381)
Q Consensus 203 a~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~ 282 (381)
++++|++|+|+++|++|.+.+++++...|+.+++++..+ |+++++ .+||.|+|++|+||++.++++.+|+
T Consensus 81 a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~-D~~~~~---------~~fD~IvSi~~~Ehvg~~~~~~~f~ 150 (273)
T PF02353_consen 81 AERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQ-DYRDLP---------GKFDRIVSIEMFEHVGRKNYPAFFR 150 (273)
T ss_dssp HHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES--GGG------------S-SEEEEESEGGGTCGGGHHHHHH
T ss_pred HHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe-eccccC---------CCCCEEEEEechhhcChhHHHHHHH
Confidence 998899999999999999999999999999999999999 999987 5999999999999999999999999
Q ss_pred HHHhccccCceEEE---EcCCCCCCCCCC-chhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHH
Q 047022 283 CCESLLAENGLSCS---TVPDQCYDEHSL-GPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRW 358 (381)
Q Consensus 283 ~~~~~LkpgG~~~i---~~~~~~~~~~~~-~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W 358 (381)
++.++|||||++++ +.+...+..... ..+|+.+||||||.+|++++++..+. ++||++.++++++.||++|++.|
T Consensus 151 ~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~-~~~l~v~~~~~~~~hY~~Tl~~W 229 (273)
T PF02353_consen 151 KISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAE-DAGLEVEDVENLGRHYARTLRAW 229 (273)
T ss_dssp HHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHH-HTT-EEEEEEE-HHHHHHHHHHH
T ss_pred HHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHh-cCCEEEEEEEEcCcCHHHHHHHH
Confidence 99999999999654 443333333222 24999999999999999999987555 58999999999999999999999
Q ss_pred HHHHHHhHHHHHhcCCCcccccC
Q 047022 359 RQKFREKHSEILALGFNEKFVRT 381 (381)
Q Consensus 359 ~~~f~~~~~~~~~~g~~~~f~r~ 381 (381)
+++|.++++++.++ |+++|+||
T Consensus 230 ~~~f~~~~~~i~~~-~~~~f~r~ 251 (273)
T PF02353_consen 230 RENFDANREEIIAL-FDEEFYRM 251 (273)
T ss_dssp HHHHHHTHHHHHHH-SHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCHHHHHH
Confidence 99999999999999 99999986
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=217.12 Aligned_cols=220 Identities=17% Similarity=0.174 Sum_probs=176.7
Q ss_pred CChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCEEEEecCC
Q 047022 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSK--HEDLEVGQIRKVSVLIEKVKL-----VKGQEVLEIGCG 194 (381)
Q Consensus 122 ~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l~~-----~~~~~VLDiGcG 194 (381)
.++...+++|+.|||..+++ |+.+++++|+ .+||..+ ..++.++|.+.++.+++.+.+ +++.+|||||||
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~-~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG 128 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGV-WEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCG 128 (340)
T ss_pred cchhhHHHHHHHHHccchHH-HHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCC
Confidence 45567888999999999999 9999988764 6889764 678999999999999999987 688999999999
Q ss_pred chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhCh
Q 047022 195 WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH 274 (381)
Q Consensus 195 ~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~ 274 (381)
+|.++..++++.+++|+|+|+|+.|++.++++....++.+++++..+ |+.+++ +++++||+|++..+++|++
T Consensus 129 ~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~-D~~~~~------~~~~~FD~V~s~~~~~h~~- 200 (340)
T PLN02244 129 IGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVA-DALNQP------FEDGQFDLVWSMESGEHMP- 200 (340)
T ss_pred CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc-CcccCC------CCCCCccEEEECCchhccC-
Confidence 99999999987788999999999999999999988888888999999 998887 5678999999999999995
Q ss_pred hcHHHHHHHHHhccccCceEEEEcCCCCCCC-----CCCc-h----hhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 047022 275 DYMEELFSCCESLLAENGLSCSTVPDQCYDE-----HSLG-P----GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHL 344 (381)
Q Consensus 275 ~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~-----~~~~-~----~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~ 344 (381)
+...+++++.++|||||+++++........ .... . .+...|..|. ..+..++.+.+. ++||..+.+
T Consensus 201 -d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~--~~s~~~~~~~l~-~aGf~~v~~ 276 (340)
T PLN02244 201 -DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPA--WCSTSDYVKLAE-SLGLQDIKT 276 (340)
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCC--CCCHHHHHHHHH-HCCCCeeEe
Confidence 578999999999999999888654322111 1000 1 1112233332 236777755554 699999999
Q ss_pred EecchhHHHHHH
Q 047022 345 ENIETHYYQKLR 356 (381)
Q Consensus 345 ~~~~~~y~~tl~ 356 (381)
+++..+..+...
T Consensus 277 ~d~s~~v~~~~~ 288 (340)
T PLN02244 277 EDWSEHVAPFWP 288 (340)
T ss_pred eeCcHHHHHHHH
Confidence 998877655443
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=190.91 Aligned_cols=176 Identities=17% Similarity=0.208 Sum_probs=145.0
Q ss_pred CEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
++|||||||+|.++..+++.. +++++|+|+|+++++.+++++...++.+++++... |+...+ ..++||+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~-d~~~~~-------~~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYR-DSAKDP-------FPDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEec-ccccCC-------CCCCCCEee
Confidence 379999999999999999874 68999999999999999999999899889999999 986655 236899999
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHL 344 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~ 344 (381)
+..+++|++ ++..+++++.++|||||.+++......... ......+. ..+++..++.+.+.+ +||.+++.
T Consensus 73 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~------~~~~s~~~~~~~l~~-~Gf~~~~~ 142 (224)
T smart00828 73 GFEVIHHIK--DKMDLFSNISRHLKDGGHLVLADFIANLLS-AIEHEETT------SYLVTREEWAELLAR-NNLRVVEG 142 (224)
T ss_pred hHHHHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcccccCc-cccccccc------cccCCHHHHHHHHHH-CCCeEEEe
Confidence 999999994 589999999999999999887654321100 01111121 236788888666664 89999999
Q ss_pred EecchhHHHHHHHHHHHHHHhHHHHHhcCCCcccccC
Q 047022 345 ENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVRT 381 (381)
Q Consensus 345 ~~~~~~y~~tl~~W~~~f~~~~~~~~~~g~~~~f~r~ 381 (381)
++++.||+.++ |..+|.++++++...++|++|.||
T Consensus 143 ~~~~~~~~~~l--~~~~f~~~~~~~~~~~~~~~~~~~ 177 (224)
T smart00828 143 VDASLEIANFL--YDPGFEDNLERLYQDDLDEVTKRH 177 (224)
T ss_pred EECcHhHhhhc--cChhHHHHHHHhccccchHHHHHH
Confidence 99999999876 999999999999998899988875
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=183.89 Aligned_cols=192 Identities=19% Similarity=0.267 Sum_probs=147.0
Q ss_pred ChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHH
Q 047022 123 TLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEI 202 (381)
Q Consensus 123 ~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l 202 (381)
......++|+..||+.|++ .+..++. ..-+.+++.+.+++|.+|||+|||||-++..+
T Consensus 12 ~v~~vF~~ia~~YD~~n~~-~S~g~~~---------------------~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~ 69 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDL-MSFGLHR---------------------LWRRALISLLGIKPGDKVLDVACGTGDMALLL 69 (238)
T ss_pred HHHHHHHhhHHHHHhhccc-ccCcchH---------------------HHHHHHHHhhCCCCCCEEEEecCCccHHHHHH
Confidence 3456677899999999988 6665542 22236777777779999999999999999999
Q ss_pred HHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHH
Q 047022 203 VRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELF 281 (381)
Q Consensus 203 a~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l 281 (381)
++. ..++|+++|+|+.|++.|+++....+... ++|+++ |++++| |++++||+|.+...+.+++ +++.+|
T Consensus 70 ~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~-dAe~LP------f~D~sFD~vt~~fglrnv~--d~~~aL 139 (238)
T COG2226 70 AKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVG-DAENLP------FPDNSFDAVTISFGLRNVT--DIDKAL 139 (238)
T ss_pred HHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEe-chhhCC------CCCCccCEEEeeehhhcCC--CHHHHH
Confidence 998 44799999999999999999999888775 999999 999999 8999999999999999994 699999
Q ss_pred HHHHhccccCceEEEEc-CCCCCCCCCCc-hhhhhhhccCC-------------------CCCCCHHHHHHHHHhcCCcE
Q 047022 282 SCCESLLAENGLSCSTV-PDQCYDEHSLG-PGFIKEYIFPS-------------------GCLPSLRRVTSAMTSSSRLC 340 (381)
Q Consensus 282 ~~~~~~LkpgG~~~i~~-~~~~~~~~~~~-~~~i~~yi~pg-------------------g~lp~~~~~~~~l~~~~Gf~ 340 (381)
++++|+|||||++++.. ..+........ ..|..+++.|- -..|+.+++.+.++ ++||+
T Consensus 140 ~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~-~~gf~ 218 (238)
T COG2226 140 KEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIE-KAGFE 218 (238)
T ss_pred HHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHH-hcCce
Confidence 99999999999965543 22221111111 12333334331 12677777765555 48998
Q ss_pred EEEEEec
Q 047022 341 VEHLENI 347 (381)
Q Consensus 341 v~~~~~~ 347 (381)
.+..+++
T Consensus 219 ~i~~~~~ 225 (238)
T COG2226 219 EVRYENL 225 (238)
T ss_pred EEeeEee
Confidence 7765554
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=181.51 Aligned_cols=193 Identities=19% Similarity=0.223 Sum_probs=154.5
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
....+++.+.+.++.+|||||||+|..+..+++..+++|+++|+|+.+++.|+++... .+++.+..+ |+.+.+
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~-D~~~~~--- 112 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEAN-DILKKD--- 112 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEEC-CcccCC---
Confidence 3457888899999999999999999999999876788999999999999999988653 357999999 988766
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC-CCCCCCHHHHH
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP-SGCLPSLRRVT 330 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p-gg~lp~~~~~~ 330 (381)
+++++||+|++..++.|++..+...+++++.++|||||.++++.+...... ........++.. +..+++..++.
T Consensus 113 ---~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 187 (263)
T PTZ00098 113 ---FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIE--NWDEEFKAYIKKRKYTLIPIQEYG 187 (263)
T ss_pred ---CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccccc--CcHHHHHHHHHhcCCCCCCHHHHH
Confidence 556899999999999999766789999999999999999888765332111 111122233222 23466788886
Q ss_pred HHHHhcCCcEEEEEEecchhHHHHHHHHHHHHHHhHHHHHhcCCCccc
Q 047022 331 SAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKF 378 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f~~~~~~~~~~g~~~~f 378 (381)
+.+. ++||+++..++++.++...+..-.+.+.++.+++.+. |++++
T Consensus 188 ~~l~-~aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 233 (263)
T PTZ00098 188 DLIK-SCNFQNVVAKDISDYWLELLQVELKKLEEKKEEFLKL-YSEKE 233 (263)
T ss_pred HHHH-HCCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHHHHh-cCHHH
Confidence 6555 5899999999999999999999999999999999886 77654
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-22 Score=184.28 Aligned_cols=141 Identities=23% Similarity=0.297 Sum_probs=86.9
Q ss_pred hHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHH
Q 047022 125 TQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVR 204 (381)
Q Consensus 125 ~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~ 204 (381)
....+.|+..||..|++ .+...+.. ++. .+++.+...+|.+|||+|||+|.++..+++
T Consensus 10 ~~~Fd~ia~~YD~~n~~-ls~g~~~~-------------------wr~--~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~ 67 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDL-LSFGQDRR-------------------WRR--KLIKLLGLRPGDRVLDVACGTGDVTRELAR 67 (233)
T ss_dssp -----------------------------------------------S--HHHHHHT--S--EEEEET-TTSHHHHHHGG
T ss_pred HHHHHHHHHHhCCCccc-cCCcHHHH-------------------HHH--HHHhccCCCCCCEEEEeCCChHHHHHHHHH
Confidence 34456788889988888 66655432 222 556666778999999999999999999988
Q ss_pred h--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHH
Q 047022 205 Q--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFS 282 (381)
Q Consensus 205 ~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~ 282 (381)
+ +..+|+|+|+|++|++.|+++....+.. +|++.++ |++++| +++++||+|++...+++++ ++...++
T Consensus 68 ~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~-da~~lp------~~d~sfD~v~~~fglrn~~--d~~~~l~ 137 (233)
T PF01209_consen 68 RVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQG-DAEDLP------FPDNSFDAVTCSFGLRNFP--DRERALR 137 (233)
T ss_dssp GSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE--BTTB--------S-TT-EEEEEEES-GGG-S--SHHHHHH
T ss_pred HCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEc-CHHHhc------CCCCceeEEEHHhhHHhhC--CHHHHHH
Confidence 7 3479999999999999999999988776 8999999 999998 7789999999999999995 5899999
Q ss_pred HHHhccccCceEEEE
Q 047022 283 CCESLLAENGLSCST 297 (381)
Q Consensus 283 ~~~~~LkpgG~~~i~ 297 (381)
+++|+|||||+++|.
T Consensus 138 E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 138 EMYRVLKPGGRLVIL 152 (233)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHHcCCCeEEEEe
Confidence 999999999996653
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=191.40 Aligned_cols=190 Identities=17% Similarity=0.195 Sum_probs=153.2
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+.+++.+.++++.+|||||||+|..+..+++..+++|+|+|+|+++++.|+++.. +...++++..+ |+...+
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~-d~~~~~---- 327 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVA-DCTKKT---- 327 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEc-CcccCC----
Confidence 35677777778899999999999999999998778899999999999999998765 44457999999 988776
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhcc-CCCCCCCHHHHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIF-PSGCLPSLRRVTS 331 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~-pgg~lp~~~~~~~ 331 (381)
+++++||+|+|..+++|++ ++..+++++.++|||||.++++.+...... . ...+..++. .+..+++..++.+
T Consensus 328 --~~~~~fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~-~~~~~~~~~~~g~~~~~~~~~~~ 400 (475)
T PLN02336 328 --YPDNSFDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGT--P-SPEFAEYIKQRGYDLHDVQAYGQ 400 (475)
T ss_pred --CCCCCEEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCC--C-cHHHHHHHHhcCCCCCCHHHHHH
Confidence 4557899999999999994 689999999999999999888765432111 1 122233333 3456788888866
Q ss_pred HHHhcCCcEEEEEEecchhHHHHHHHHHHHHHHhHHHHHhcCCCccc
Q 047022 332 AMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKF 378 (381)
Q Consensus 332 ~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f~~~~~~~~~~g~~~~f 378 (381)
.+. ++||+++.+++++.+|..++..|.+.+.++..++... +++..
T Consensus 401 ~l~-~aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 445 (475)
T PLN02336 401 MLK-DAGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISD-FSEED 445 (475)
T ss_pred HHH-HCCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHh-cCHHH
Confidence 555 5999999999999999999999999999999888765 66543
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=167.29 Aligned_cols=163 Identities=13% Similarity=0.083 Sum_probs=118.9
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHH--cCCCCCeEEEEecCccccCcCC
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKE--AGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~--~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+++.+.+.++.+|||+|||+|.++..++++. ..+|+|+|+|++|++.|+++... ....+++++..+ |+.+++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~-d~~~lp--- 140 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEG-DATDLP--- 140 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEc-ccccCC---
Confidence 4556677889999999999999999988763 36999999999999999887542 223347999999 999887
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC-Cchhhhhhhc-cCC---------
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS-LGPGFIKEYI-FPS--------- 320 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~-~~~~~i~~yi-~pg--------- 320 (381)
+++++||+|++..+++|+ .++..+++++.++|||||++++.........+. ....|+.+.+ .|-
T Consensus 141 ---~~~~sfD~V~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (261)
T PLN02233 141 ---FDDCYFDAITMGYGLRNV--VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKE 215 (261)
T ss_pred ---CCCCCEeEEEEecccccC--CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHH
Confidence 567899999999999999 468999999999999999987765432211110 0111111110 010
Q ss_pred --------CCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 321 --------GCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 321 --------g~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
...++..++.+.+. ++||+.+...++.
T Consensus 216 y~~l~~s~~~f~s~~el~~ll~-~aGF~~~~~~~~~ 250 (261)
T PLN02233 216 YEYLKSSINEYLTGEELEKLAL-EAGFSSAKHYEIS 250 (261)
T ss_pred HHHHHHHHHhcCCHHHHHHHHH-HCCCCEEEEEEcC
Confidence 13567888866555 5899988766654
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-20 Score=163.50 Aligned_cols=159 Identities=25% Similarity=0.381 Sum_probs=122.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
-+|.+|||||||.|.++..+|+. |+.|+|+|+++.+++.|+.+..+.++. +++.+. ..+++. ...++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~-~~edl~------~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVN--IDYRQA-TVEDLA------SAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhcccc--ccchhh-hHHHHH------hcCCCccE
Confidence 37899999999999999999995 999999999999999999999988875 778887 777776 23389999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC---chhhhhhhccCCCC-----CCCHHHHHHHHH
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL---GPGFIKEYIFPSGC-----LPSLRRVTSAMT 334 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~---~~~~i~~yi~pgg~-----lp~~~~~~~~l~ 334 (381)
|+|.+|+||+ +++..+++.|.+++||||.+++++++.....+.. ...++-+ +.|.|. +-..+|+...+.
T Consensus 128 V~cmEVlEHv--~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~ 204 (243)
T COG2227 128 VTCMEVLEHV--PDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLL 204 (243)
T ss_pred EEEhhHHHcc--CCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhcc
Confidence 9999999999 4689999999999999999999999876554421 1222333 456654 234556655554
Q ss_pred hcCCcEEEEEEecchhHHHHHHH
Q 047022 335 SSSRLCVEHLENIETHYYQKLRR 357 (381)
Q Consensus 335 ~~~Gf~v~~~~~~~~~y~~tl~~ 357 (381)
.+++.+.+.. +.+|.+....
T Consensus 205 -~~~~~~~~~~--g~~y~p~~~~ 224 (243)
T COG2227 205 -GANLKIIDRK--GLTYNPLTNS 224 (243)
T ss_pred -cCCceEEeec--ceEeccccce
Confidence 4688886654 3444443333
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-19 Score=167.75 Aligned_cols=164 Identities=20% Similarity=0.331 Sum_probs=125.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.++.+|||||||+|.++..+++ .+++|+|+|+|+++++.|+++....+...++++..+ |+++++ +..++||+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~-dae~l~------~~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCT-TAEKLA------DEGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEec-CHHHhh------hccCCCCE
Confidence 4677999999999999999987 589999999999999999988766555568999999 998876 34578999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC---CchhhhhhhccCCCC----CCCHHHHHHHHHh
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS---LGPGFIKEYIFPSGC----LPSLRRVTSAMTS 335 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~---~~~~~i~~yi~pgg~----lp~~~~~~~~l~~ 335 (381)
|++.++++|+. ++..+++++.++|||||.+++++.+.....+. ....++.+++.++.+ ..+..++.+.+.
T Consensus 202 Vi~~~vLeHv~--d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~- 278 (322)
T PLN02396 202 VLSLEVIEHVA--NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQ- 278 (322)
T ss_pred EEEhhHHHhcC--CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHH-
Confidence 99999999994 68999999999999999999998765432211 112334444444432 467888866665
Q ss_pred cCCcEEEEEEecchhHHHHHHHHH
Q 047022 336 SSRLCVEHLENIETHYYQKLRRWR 359 (381)
Q Consensus 336 ~~Gf~v~~~~~~~~~y~~tl~~W~ 359 (381)
++||+++++..+ .|.+....|.
T Consensus 279 ~aGf~i~~~~G~--~~~p~~~~w~ 300 (322)
T PLN02396 279 RASVDVKEMAGF--VYNPITGRWL 300 (322)
T ss_pred HcCCeEEEEeee--EEcCcCCeEE
Confidence 589999877554 3445444453
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-19 Score=162.34 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=121.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..++..+.++++.+|||+|||+|.++..+++. ++.+|+|+|+|+++++.++++....++ +++++..+ |..+++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~-d~~~~~--- 109 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHG-NAMELP--- 109 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEe-chhcCC---
Confidence 46777888889999999999999999999886 357999999999999999999887776 48999999 998876
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCC-CCCCCchhhhhhhccC-----------
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCY-DEHSLGPGFIKEYIFP----------- 319 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~-~~~~~~~~~i~~yi~p----------- 319 (381)
++.++||+|++..+++|+ .++..+++++.++|+|||++++..+.... ..+.....++.+++.|
T Consensus 110 ---~~~~~fD~V~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 184 (231)
T TIGR02752 110 ---FDDNSFDYVTIGFGLRNV--PDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYK 184 (231)
T ss_pred ---CCCCCccEEEEecccccC--CCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHH
Confidence 456899999999999998 45789999999999999997765433211 1100000000000001
Q ss_pred --------CCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 320 --------SGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 320 --------gg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
....|+..++.+.+. ++||++++++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~l~-~aGf~~~~~~~~~ 220 (231)
T TIGR02752 185 EYSWLQESTRDFPGMDELAEMFQ-EAGFKDVEVKSYT 220 (231)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH-HcCCCeeEEEEcc
Confidence 113567788755555 5899988876653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=159.71 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
++.+..+++.+. .++.+|||+|||+|.++..+++. +.+|+++|+|++|++.|+++....++.+++++..+ |+.++++
T Consensus 31 ~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~-d~~~l~~ 107 (255)
T PRK11036 31 WQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC-AAQDIAQ 107 (255)
T ss_pred HHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEc-CHHHHhh
Confidence 345567777776 55679999999999999999986 88999999999999999999998888778999999 9887641
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+..++||+|++..+++|+ .++..+++++.++|||||++++...+.
T Consensus 108 -----~~~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 108 -----HLETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred -----hcCCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 245789999999999999 457899999999999999988776553
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-18 Score=157.01 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=113.6
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-----CCeEEEEecCccccCcCCccccCCCc
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ-----DTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~-----~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
|.+|||+|||+|-++..+|+ .|+.|+|+|+++.+++.|+++....... .++++... +.+... ++
T Consensus 90 g~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~-~~E~~~---------~~ 158 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDT-DVEGLT---------GK 158 (282)
T ss_pred CceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhc-chhhcc---------cc
Confidence 47899999999999999999 5999999999999999999985433222 23666666 776665 67
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC---chhhhhhhccCCCC----CCCHHHHHHH
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL---GPGFIKEYIFPSGC----LPSLRRVTSA 332 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~---~~~~i~~yi~pgg~----lp~~~~~~~~ 332 (381)
||+|+|.+++||+ +++..+++.+.++|||||.+++++-+.....+.. ..+.+.+.+-+|.+ ++++.++...
T Consensus 159 fDaVvcsevleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~ 236 (282)
T KOG1270|consen 159 FDAVVCSEVLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSI 236 (282)
T ss_pred cceeeeHHHHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHH
Confidence 9999999999999 7899999999999999999999987765444322 23444553333443 5778888555
Q ss_pred HHhcCCcEEEEEEe
Q 047022 333 MTSSSRLCVEHLEN 346 (381)
Q Consensus 333 l~~~~Gf~v~~~~~ 346 (381)
+. +.++.+.++..
T Consensus 237 l~-~~~~~v~~v~G 249 (282)
T KOG1270|consen 237 LN-ANGAQVNDVVG 249 (282)
T ss_pred HH-hcCcchhhhhc
Confidence 55 46888766544
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=154.09 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 169 q~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
+.+....+++.+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++ ++++..+ |+.++
T Consensus 14 ~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~-d~~~~ 84 (255)
T PRK14103 14 RGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTG-DVRDW 84 (255)
T ss_pred hhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEc-ChhhC
Confidence 3445567888888888999999999999999999887 578999999999999998763 4788999 98876
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC-------chhhhhh---hc
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL-------GPGFIKE---YI 317 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~-------~~~~i~~---yi 317 (381)
+ ..++||+|+++.+++|++ ++..+++++.++|||||.+++..+......... ...|... ..
T Consensus 85 ~-------~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 155 (255)
T PRK14103 85 K-------PKPDTDVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIP 155 (255)
T ss_pred C-------CCCCceEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccc
Confidence 5 347899999999999995 579999999999999999988765431111000 0112111 00
Q ss_pred c-CCCCCCCHHHHHHHHHhcCCcEEEE
Q 047022 318 F-PSGCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 318 ~-pgg~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
+ .+..+.+..++.+.+. ++||.+..
T Consensus 156 ~~~~~~~~~~~~~~~~l~-~aGf~v~~ 181 (255)
T PRK14103 156 FRVGAVVQTPAGYAELLT-DAGCKVDA 181 (255)
T ss_pred cccCcCCCCHHHHHHHHH-hCCCeEEE
Confidence 1 1234567777755554 69997644
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-18 Score=136.29 Aligned_cols=107 Identities=26% Similarity=0.410 Sum_probs=92.2
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~~~~~~fD 261 (381)
|+.+|||||||+|.++..+++. ++++|+|+|+|+++++.|+++....+..++++++.+ |+ .... ..++||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~-------~~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQG-DAEFDPD-------FLEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEES-CCHGGTT-------TSSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC-ccccCcc-------cCCCCC
Confidence 6789999999999999999994 799999999999999999999977888889999999 99 3333 346799
Q ss_pred EEEEch-hhHhhCh-hcHHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICG-MIEAVGH-DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~-~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|++.. +++++.. ++...+++++.+.|+|||+++++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999 4443432 467899999999999999999875
|
... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=148.88 Aligned_cols=142 Identities=19% Similarity=0.227 Sum_probs=121.3
Q ss_pred hHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHH
Q 047022 125 TQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVR 204 (381)
Q Consensus 125 ~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~ 204 (381)
..-.++|+..||..||. ..+...+ -.-+..+.++...++.++||++||+|-.+..+.+
T Consensus 63 ~~vF~~vA~~YD~mND~-mSlGiHR---------------------lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~ 120 (296)
T KOG1540|consen 63 HHVFESVAKKYDIMNDA-MSLGIHR---------------------LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILR 120 (296)
T ss_pred HHHHHHHHHHHHHHHHH-hhcchhH---------------------HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHH
Confidence 34556889999999999 6665432 1224678889989999999999999999999988
Q ss_pred h-cC------CEEEEEcCCHHHHHHHHHHHHHcCCCCC--eEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChh
Q 047022 205 Q-TG------CKYTGITLSELQLKYAEIKVKEAGLQDT--SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD 275 (381)
Q Consensus 205 ~-~~------~~v~gvDis~~~~~~a~~~~~~~gl~~~--i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~ 275 (381)
+ .. .+|+++|+|++|++.++++..+.++.+. +.++.+ |++++| |++++||+.++.+.+..++
T Consensus 121 ~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~-dAE~Lp------Fdd~s~D~yTiafGIRN~t-- 191 (296)
T KOG1540|consen 121 HVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG-DAEDLP------FDDDSFDAYTIAFGIRNVT-- 191 (296)
T ss_pred hhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC-CcccCC------CCCCcceeEEEecceecCC--
Confidence 7 22 6899999999999999999988888665 899999 999999 8899999999999999994
Q ss_pred cHHHHHHHHHhccccCceEEEE
Q 047022 276 YMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 276 ~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
++++.+++++|+|||||++.+-
T Consensus 192 h~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 192 HIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred CHHHHHHHHHHhcCCCcEEEEE
Confidence 5899999999999999996653
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=151.56 Aligned_cols=181 Identities=16% Similarity=0.090 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 166 EVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 166 ~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
+-+..-+...++..+...++.+|||||||+|.++..++......|+|+|+|+.|+..++......+...++.+... ++.
T Consensus 103 e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~-~ie 181 (314)
T TIGR00452 103 EWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL-GIE 181 (314)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC-CHH
Confidence 3334455667888888788999999999999999998876334799999999998765443222222347888888 988
Q ss_pred ccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC--CC-CCCCCchhhhhhhccCCCC
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ--CY-DEHSLGPGFIKEYIFPSGC 322 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~--~~-~~~~~~~~~i~~yi~pgg~ 322 (381)
+++ ...+||+|+|+++++|+ .++..++++++++|||||.+++++..- .. ...... ....+. .-...
T Consensus 182 ~lp-------~~~~FD~V~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-~ry~k~-~nv~f 250 (314)
T TIGR00452 182 QLH-------ELYAFDTVFSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-DRYAKM-KNVYF 250 (314)
T ss_pred HCC-------CCCCcCEEEEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-HHHHhc-ccccc
Confidence 887 23589999999999999 568999999999999999988764211 11 111111 111111 00124
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEEecchh--HHHHHHHHH
Q 047022 323 LPSLRRVTSAMTSSSRLCVEHLENIETH--YYQKLRRWR 359 (381)
Q Consensus 323 lp~~~~~~~~l~~~~Gf~v~~~~~~~~~--y~~tl~~W~ 359 (381)
+|+..++...+. ++||+.+.+.+.... .......|.
T Consensus 251 lpS~~~L~~~L~-~aGF~~V~i~~~~~tt~~eqr~t~w~ 288 (314)
T TIGR00452 251 IPSVSALKNWLE-KVGFENFRILDVLKTTPEEQRKTDWI 288 (314)
T ss_pred CCCHHHHHHHHH-HCCCeEEEEEeccCCCHHHhhhhhhh
Confidence 688888866555 599999887765432 233345554
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-17 Score=154.38 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=120.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
.-+.+.+...+...++.+|||||||+|.++..+++.....|+|+|+|+.++..++......+...++++..+ |+++++
T Consensus 108 ~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~-d~e~lp- 185 (322)
T PRK15068 108 DWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPL-GIEQLP- 185 (322)
T ss_pred HhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeC-CHHHCC-
Confidence 344566777777667899999999999999999986334799999999998765544333333457999999 999887
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC---CCCCCCCCchhhhhhhc-cCC-CCCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD---QCYDEHSLGPGFIKEYI-FPS-GCLP 324 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~---~~~~~~~~~~~~i~~yi-~pg-g~lp 324 (381)
+ .++||+|+|.++++|+ .++..++++++++|+|||.++++... ......... ..|. .++ -.+|
T Consensus 186 -----~-~~~FD~V~s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~----~~y~~~~~~~~lp 253 (322)
T PRK15068 186 -----A-LKAFDTVFSMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG----DRYAKMRNVYFIP 253 (322)
T ss_pred -----C-cCCcCEEEECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch----hHHhcCccceeCC
Confidence 3 5889999999999998 56899999999999999998876321 111001111 1111 121 1368
Q ss_pred CHHHHHHHHHhcCCcEEEEEEecch
Q 047022 325 SLRRVTSAMTSSSRLCVEHLENIET 349 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~~~~~ 349 (381)
+..++...+. ++||+.+.+.+...
T Consensus 254 s~~~l~~~L~-~aGF~~i~~~~~~~ 277 (322)
T PRK15068 254 SVPALKNWLE-RAGFKDVRIVDVSV 277 (322)
T ss_pred CHHHHHHHHH-HcCCceEEEEeCCC
Confidence 8888866665 59999988877654
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-17 Score=151.85 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 168 GQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 168 aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
.|......++..+.+.++.+|||||||+|.++..+++. ++++|+|+|+|+.|++.|+++. .++++..+ |+..
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~-d~~~ 87 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEA-DIAS 87 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEEC-chhc
Confidence 34555668888888889999999999999999999987 5689999999999999998874 36889999 9877
Q ss_pred cCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCC-------CCchhhhhhhccC
Q 047022 247 LKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEH-------SLGPGFIKEYIFP 319 (381)
Q Consensus 247 l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~-------~~~~~~i~~yi~p 319 (381)
+. ..++||+|+++.+++|++ +...+++++.++|||||.++++.+....... .....|...+..+
T Consensus 88 ~~-------~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 158 (258)
T PRK01683 88 WQ-------PPQALDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDR 158 (258)
T ss_pred cC-------CCCCccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccc
Confidence 65 346899999999999994 5789999999999999999888765321111 0112344444333
Q ss_pred C---CCCCCHHHHHHHHHhcCCcEEE
Q 047022 320 S---GCLPSLRRVTSAMTSSSRLCVE 342 (381)
Q Consensus 320 g---g~lp~~~~~~~~l~~~~Gf~v~ 342 (381)
+ ..+|+..++.+.+.+ +|+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~l~~-~g~~v~ 183 (258)
T PRK01683 159 GARRAPLPPPHAYYDALAP-AACRVD 183 (258)
T ss_pred cccCcCCCCHHHHHHHHHh-CCCcee
Confidence 3 356777777666665 677653
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-17 Score=143.75 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=97.3
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++....++. ++++... |+.+.+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~-d~~~~~------ 91 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVV-DLNNLT------ 91 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEec-ChhhCC------
Confidence 4556666667789999999999999999986 889999999999999999999888874 6889999 987765
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..++||+|+++.+++|+++.+...+++++.++|||||++++
T Consensus 92 -~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 92 -FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 24679999999999998877889999999999999999543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-17 Score=149.70 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 169 q~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
|+...+.+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+.|++.++++.. .+.+..+ |+..++
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~-d~~~~~ 98 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAG-DIESLP 98 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEc-CcccCc
Confidence 5566667788887667789999999999999998874 8899999999999999988742 3567888 998876
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCC-CCCCCchhhhhhhccC-CCCCCCH
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCY-DEHSLGPGFIKEYIFP-SGCLPSL 326 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~-~~~~~~~~~i~~yi~p-gg~lp~~ 326 (381)
+.+++||+|+++.+++++ .++..++.++.++|||||.++++.+.... .... ..|..-...+ ....++.
T Consensus 99 ------~~~~~fD~V~s~~~l~~~--~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~--~~~~~~~~~~~~~~~~~~ 168 (251)
T PRK10258 99 ------LATATFDLAWSNLAVQWC--GNLSTALRELYRVVRPGGVVAFTTLVQGSLPELH--QAWQAVDERPHANRFLPP 168 (251)
T ss_pred ------CCCCcEEEEEECchhhhc--CCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHH--HHHHHhccCCccccCCCH
Confidence 456789999999999988 46899999999999999998888755331 1111 0111000111 2345677
Q ss_pred HHHHHHHHhcCCcEEEEEEecchh
Q 047022 327 RRVTSAMTSSSRLCVEHLENIETH 350 (381)
Q Consensus 327 ~~~~~~l~~~~Gf~v~~~~~~~~~ 350 (381)
.++...+. ..++.. +.+.+..+
T Consensus 169 ~~l~~~l~-~~~~~~-~~~~~~~~ 190 (251)
T PRK10258 169 DAIEQALN-GWRYQH-HIQPITLW 190 (251)
T ss_pred HHHHHHHH-hCCcee-eeeEEEEE
Confidence 77765554 467764 34444333
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=152.32 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=118.8
Q ss_pred HHHHHcCC-CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKL-VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~-~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+++.+.+ .++.+|||||||+|.++..+++. .+.+|+++|+|++|++.|+++... .++++..+ |..+++
T Consensus 103 ~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~g-D~e~lp---- 173 (340)
T PLN02490 103 DALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEG-DAEDLP---- 173 (340)
T ss_pred HHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEec-cHHhCC----
Confidence 45555554 46789999999999999998876 457999999999999999987542 36889999 998877
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC-CCCCCCHHHHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP-SGCLPSLRRVTS 331 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p-gg~lp~~~~~~~ 331 (381)
+.+++||+|++..+++|++ +....++++.++|||||++++..+... ..+..++... ....++.+++.+
T Consensus 174 --~~~~sFDvVIs~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~~p-------~~~~~r~~~~~~~~~~t~eEl~~ 242 (340)
T PLN02490 174 --FPTDYADRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPVHP-------TFWLSRFFADVWMLFPKEEEYIE 242 (340)
T ss_pred --CCCCceeEEEEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEecCc-------chhHHHHhhhhhccCCCHHHHHH
Confidence 4568899999999999985 568899999999999999877543221 1122221111 112467888866
Q ss_pred HHHhcCCcEEEEEEecchhHHH
Q 047022 332 AMTSSSRLCVEHLENIETHYYQ 353 (381)
Q Consensus 332 ~l~~~~Gf~v~~~~~~~~~y~~ 353 (381)
.+. ++||+.+.+++++.++.+
T Consensus 243 lL~-~aGF~~V~i~~i~~~~~~ 263 (340)
T PLN02490 243 WFT-KAGFKDVKLKRIGPKWYR 263 (340)
T ss_pred HHH-HCCCeEEEEEEcChhhcc
Confidence 665 589999999888776543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-16 Score=137.99 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=108.6
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.+...++.+|||+|||+|.++..++++ +.+|+++|+|+.+++.++++....++. +.+... |....+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~-d~~~~~------ 90 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP--LRTDAY-DINAAA------ 90 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEec-cchhcc------
Confidence 3445555556679999999999999999985 889999999999999999988877764 777777 776544
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE-EcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHH
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS-TVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAM 333 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i-~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l 333 (381)
..++||+|+++.+++|++..+...+++++.++|||||++++ ...... .... . .|.....+..++.+.+
T Consensus 91 -~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~--~~~~-~-------~~~~~~~~~~el~~~f 159 (195)
T TIGR00477 91 -LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTA--DYPC-H-------MPFSFTFKEDELRQYY 159 (195)
T ss_pred -ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccC--CCCC-C-------CCcCccCCHHHHHHHh
Confidence 23679999999999999777788999999999999999544 322111 0000 0 1222345677775443
Q ss_pred HhcCCcEEEEEE
Q 047022 334 TSSSRLCVEHLE 345 (381)
Q Consensus 334 ~~~~Gf~v~~~~ 345 (381)
.+|+++...
T Consensus 160 ---~~~~~~~~~ 168 (195)
T TIGR00477 160 ---ADWELLKYN 168 (195)
T ss_pred ---CCCeEEEee
Confidence 258877665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=144.22 Aligned_cols=162 Identities=22% Similarity=0.308 Sum_probs=115.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++....+..+++++..+ |+... .++||
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~---------~~~fD 129 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVG-DLESL---------LGRFD 129 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEc-Cchhc---------cCCcC
Confidence 457889999999999999999985 77899999999999999999988777668999999 85332 37899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC------CCCCCCHHHHHHHHHh
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP------SGCLPSLRRVTSAMTS 335 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p------gg~lp~~~~~~~~l~~ 335 (381)
+|++..+++|++++....+++.+.+.+++++.+. ..+.... ......+.+ .+| .....+..++.+.+.
T Consensus 130 ~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~-~~~~~~~---~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~- 203 (230)
T PRK07580 130 TVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT-FAPYTPL---LALLHWIGG-LFPGPSRTTRIYPHREKGIRRALA- 203 (230)
T ss_pred EEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE-ECCccHH---HHHHHHhcc-ccCCccCCCCccccCHHHHHHHHH-
Confidence 9999999999887778889999998775444332 2221110 001111111 112 123345666655544
Q ss_pred cCCcEEEEEEec-chhHHHHHHHHHH
Q 047022 336 SSRLCVEHLENI-ETHYYQKLRRWRQ 360 (381)
Q Consensus 336 ~~Gf~v~~~~~~-~~~y~~tl~~W~~ 360 (381)
++||++.....+ ..+|..++.+|.+
T Consensus 204 ~~Gf~~~~~~~~~~~~~~~~~~~~~~ 229 (230)
T PRK07580 204 AAGFKVVRTERISSGFYFSRLLEAVR 229 (230)
T ss_pred HCCCceEeeeeccchhHHHHHHHHhh
Confidence 589999887765 3466777777754
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=142.03 Aligned_cols=166 Identities=20% Similarity=0.309 Sum_probs=120.9
Q ss_pred HHHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVK--LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.....+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++....+..+++++..+ |+.+++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~~ 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVN-DLLSLC 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-ChhhCC
Confidence 33345555555 567889999999999999999885 78999999999999999999987776668999999 987765
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCC------CC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPS------GC 322 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pg------g~ 322 (381)
++||+|++..+++|++..+...+++++.+++++++.+.+. +.... .....++... +|+ ..
T Consensus 118 ---------~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~-~~~~~---~~~~~~~~~~-~~~~~~~~~~~ 183 (219)
T TIGR02021 118 ---------GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA-PKTAW---LAFLKMIGEL-FPGSSRATSAY 183 (219)
T ss_pred ---------CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC-CCchH---HHHHHHHHhh-CcCcccccceE
Confidence 7899999999999998777889999999999876555443 21111 1111122222 222 23
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEEecchhHHH
Q 047022 323 LPSLRRVTSAMTSSSRLCVEHLENIETHYYQ 353 (381)
Q Consensus 323 lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~ 353 (381)
.++..++.+.+ +.+||+++..+.....+..
T Consensus 184 ~~~~~~~~~~l-~~~Gf~v~~~~~~~~~~~~ 213 (219)
T TIGR02021 184 LHPMTDLERAL-GELGWKIVREGLVSTGFYN 213 (219)
T ss_pred EecHHHHHHHH-HHcCceeeeeecccccchh
Confidence 45677775554 4689999988766554433
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-17 Score=125.78 Aligned_cols=95 Identities=24% Similarity=0.344 Sum_probs=82.9
Q ss_pred EEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchh
Q 047022 189 LEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGM 268 (381)
Q Consensus 189 LDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~ 268 (381)
||+|||+|..+..++++.+.+|+++|+|+++++.++++.... ++.+..+ |..+++ +++++||+|++..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~-d~~~l~------~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQG-DAEDLP------FPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEES-BTTSSS------S-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----Cchheee-hHHhCc------cccccccccccccc
Confidence 899999999999999976889999999999999999987543 4669999 999998 77899999999999
Q ss_pred hHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 269 IEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 269 l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
++|+ +++..+++++.|+|||||+++|
T Consensus 70 ~~~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999 6799999999999999999875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=142.52 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=97.2
Q ss_pred hHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHH-HHHHHHHcCCCCCCEEEEecCCchHHHHHHH
Q 047022 125 TQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRK-VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIV 203 (381)
Q Consensus 125 ~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~-~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la 203 (381)
....+.++..||..|.+ .+...+. ..++. +..+.... .++.+|||+|||+|.++..++
T Consensus 12 ~~~f~~iA~~YD~~n~~-~s~g~~~------------------~wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~ 70 (226)
T PRK05785 12 QEAYNKIPKAYDRANRF-ISFNQDV------------------RWRAELVKTILKYC--GRPKKVLDVAAGKGELSYHFK 70 (226)
T ss_pred HHHHHhhhHHHHHhhhh-ccCCCcH------------------HHHHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHH
Confidence 34566788888887776 4433221 11222 22222222 346799999999999999998
Q ss_pred HhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHH
Q 047022 204 RQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSC 283 (381)
Q Consensus 204 ~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~ 283 (381)
+..+.+|+|+|+|++|++.|+++ ..+.++ |+.+++ +++++||+|++..+++|+ .+++.++++
T Consensus 71 ~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~-d~~~lp------~~d~sfD~v~~~~~l~~~--~d~~~~l~e 132 (226)
T PRK05785 71 KVFKYYVVALDYAENMLKMNLVA---------DDKVVG-SFEALP------FRDKSFDVVMSSFALHAS--DNIEKVIAE 132 (226)
T ss_pred HhcCCEEEEECCCHHHHHHHHhc---------cceEEe-chhhCC------CCCCCEEEEEecChhhcc--CCHHHHHHH
Confidence 86567999999999999998764 235678 998887 678999999999999998 568999999
Q ss_pred HHhccccCc
Q 047022 284 CESLLAENG 292 (381)
Q Consensus 284 ~~~~LkpgG 292 (381)
+.|+|||.+
T Consensus 133 ~~RvLkp~~ 141 (226)
T PRK05785 133 FTRVSRKQV 141 (226)
T ss_pred HHHHhcCce
Confidence 999999953
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.5e-16 Score=142.75 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=95.5
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+.++.+|||||||+|..+..+++. ++++++|+|+|+.|++.|++++...+...++++..+ |+.+++ + .
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~-d~~~~~------~--~ 124 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG-DIRDIA------I--E 124 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeC-ChhhCC------C--C
Confidence 457889999999999999888873 578999999999999999999988887778999999 988776 1 4
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.+|+|+++.+++|+++.+...+++++.++|||||.++++.
T Consensus 125 ~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 125 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5999999999999987677899999999999999988764
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=142.91 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=112.7
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 180 VKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
..++++.+|||||||+|..+..+++.. ..+|+++|+|+++++.|+++....++. ++++..+ |+.+++ +++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~-d~~~l~------~~~ 144 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLG-EIEALP------VAD 144 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEc-chhhCC------CCC
Confidence 456789999999999999888777653 358999999999999999998887774 8999999 998877 456
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcC
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSS 337 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~ 337 (381)
++||+|++..+++|++ +...+++++.++|||||+++++...............+.-+..-.+...+..++.+.+. ++
T Consensus 145 ~~fD~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~-~a 221 (272)
T PRK11873 145 NSVDVIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLA-EA 221 (272)
T ss_pred CceeEEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHH-HC
Confidence 7999999999999884 57889999999999999988754221111000000001111111122346677766555 58
Q ss_pred CcEEEEEEe
Q 047022 338 RLCVEHLEN 346 (381)
Q Consensus 338 Gf~v~~~~~ 346 (381)
||..+.+..
T Consensus 222 Gf~~v~i~~ 230 (272)
T PRK11873 222 GFVDITIQP 230 (272)
T ss_pred CCCceEEEe
Confidence 999876644
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-15 Score=137.54 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=99.3
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+.+++.+.+.++.+|||+|||+|.++..+++.. +++++++|+|+.+++.++++.. ....++++... |....+
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~-d~~~~~--- 82 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRG-DADGLP--- 82 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEec-ccccCC---
Confidence 467788888999999999999999999998873 5799999999999999998833 23357999999 987766
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+..++||+|++..+++|+ .++..+++++.++|||||.+++..+.
T Consensus 83 ---~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 83 ---FPDGSFDAVRSDRVLQHL--EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ---CCCCCceEEEEechhhcc--CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 456889999999999999 46899999999999999998887654
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-16 Score=133.38 Aligned_cols=109 Identities=26% Similarity=0.485 Sum_probs=94.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
+.+.+|||+|||+|.++..+++. ++.+++|+|+|+++++.|+++++..++. +++|.++ |+.+++.. +. ++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~-d~~~l~~~----~~-~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQG-DIEDLPQE----LE-EKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEES-BTTCGCGC----SS-TTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEe-ehhccccc----cC-CCe
Confidence 46789999999999999999953 5789999999999999999999999887 8999999 99986611 12 789
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+|++..+++|+ .++..+++++.++|+|||.+++..+.
T Consensus 75 D~I~~~~~l~~~--~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHF--PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGT--SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhc--cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999999999 45789999999999999998887654
|
... |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-16 Score=137.23 Aligned_cols=138 Identities=18% Similarity=0.234 Sum_probs=97.9
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
..++.+|||||||.|.++..+++. +.+++|+|+|+.+++. .++..... +..... .+.++||
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~-~~~~~~------~~~~~fD 80 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNF-DAQDPP------FPDGSFD 80 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEE-ECHTHH------CHSSSEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhh-hhhhhh------ccccchh
Confidence 568889999999999999999775 7899999999999887 12333333 222222 2458999
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC---CCCCCCHHHHHHHHHhcCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP---SGCLPSLRRVTSAMTSSSR 338 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p---gg~lp~~~~~~~~l~~~~G 338 (381)
+|+|+.+++|++ ++..+++++.++|||||+++++++............+ .+..+ .....+..++... .+++|
T Consensus 81 ~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l-l~~~G 155 (161)
T PF13489_consen 81 LIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW--RYDRPYGGHVHFFSPDELRQL-LEQAG 155 (161)
T ss_dssp EEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC--CGTCHHTTTTEEBBHHHHHHH-HHHTT
T ss_pred hHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc--CCcCccCceeccCCHHHHHHH-HHHCC
Confidence 999999999995 6999999999999999999999876532100000001 11111 1234567777544 55699
Q ss_pred cEEEE
Q 047022 339 LCVEH 343 (381)
Q Consensus 339 f~v~~ 343 (381)
|++++
T Consensus 156 ~~iv~ 160 (161)
T PF13489_consen 156 FEIVE 160 (161)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99875
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=140.43 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=95.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
.++.+|||+|||+|..+..+++. ++++++|+|+|++|++.|++++...+...++++..+ |+.+++ + ..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~-d~~~~~------~--~~ 122 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN-DIRHVE------I--KN 122 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC-ChhhCC------C--CC
Confidence 57789999999999999999875 478999999999999999999887766668999999 998876 2 35
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+|+|++..+++|+++++...+++++.++|||||.++++.+
T Consensus 123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 8999999999999877788999999999999999888754
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=138.91 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=99.4
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...++..+...++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...++..++++..+ |..+.+
T Consensus 40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~-- 116 (239)
T PRK00216 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQG-DAEALP-- 116 (239)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEec-ccccCC--
Confidence 3456667777788999999999999999998874 38999999999999999999877666667999999 988765
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+..++||+|++..+++++ .++..+++++.++|+|||.+++..
T Consensus 117 ----~~~~~~D~I~~~~~l~~~--~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 117 ----FPDNSFDAVTIAFGLRNV--PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ----CCCCCccEEEEecccccC--CCHHHHHHHHHHhccCCcEEEEEE
Confidence 345789999999999988 458999999999999999976643
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=137.80 Aligned_cols=138 Identities=24% Similarity=0.286 Sum_probs=109.2
Q ss_pred HHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc
Q 047022 127 ARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT 206 (381)
Q Consensus 127 ~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~ 206 (381)
....++.+||..+.. +..+. +......+++.+...++.+|||+|||+|..+..+++..
T Consensus 4 ~~~~~~~~y~~~~~~-~~~~~---------------------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~ 61 (223)
T TIGR01934 4 MFDRIAPKYDLLNDL-LSFGL---------------------HRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSA 61 (223)
T ss_pred HHHHHHhhhhHHHHH-Hhccc---------------------HHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhc
Confidence 356788888887666 43222 12333456666666688999999999999999998874
Q ss_pred C--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHH
Q 047022 207 G--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCC 284 (381)
Q Consensus 207 ~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~ 284 (381)
+ .+++++|+++.+++.++++.. ...++++..+ |+.+.+ +..++||+|++..+++|+ .++..+++++
T Consensus 62 ~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~-d~~~~~------~~~~~~D~i~~~~~~~~~--~~~~~~l~~~ 129 (223)
T TIGR01934 62 PDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQA-DAEALP------FEDNSFDAVTIAFGLRNV--TDIQKALREM 129 (223)
T ss_pred CCCceEEEEECCHHHHHHHHHHhc---cCCCceEEec-chhcCC------CCCCcEEEEEEeeeeCCc--ccHHHHHHHH
Confidence 4 599999999999999998875 3357899999 998876 345789999999999988 4688999999
Q ss_pred HhccccCceEEEEc
Q 047022 285 ESLLAENGLSCSTV 298 (381)
Q Consensus 285 ~~~LkpgG~~~i~~ 298 (381)
.+.|+|||++++..
T Consensus 130 ~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 130 YRVLKPGGRLVILE 143 (223)
T ss_pred HHHcCCCcEEEEEE
Confidence 99999999977654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-15 Score=140.79 Aligned_cols=139 Identities=10% Similarity=0.145 Sum_probs=106.3
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++.+|||+|||+|..+.++++. |.+|+|+|+|+.+++.+++++...++ ++++... |..... ..++||+|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~-D~~~~~-------~~~~fD~I 188 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLY-DINSAS-------IQEEYDFI 188 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEe-chhccc-------ccCCccEE
Confidence 4459999999999999999985 89999999999999999999988877 5888888 887654 24789999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
++..+++|++.++...+++++.++|+|||++++........ ... -.|.....+..++.+.+ .+|++++
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~-~~~--------~~p~~~~~~~~el~~~~---~~~~i~~ 256 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTED-YPC--------PMPFSFTFKEGELKDYY---QDWEIVK 256 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc-CCC--------CCCCCcccCHHHHHHHh---CCCEEEE
Confidence 99999999987788999999999999999965543221110 000 01222345566774443 3698887
Q ss_pred EE
Q 047022 344 LE 345 (381)
Q Consensus 344 ~~ 345 (381)
.+
T Consensus 257 ~~ 258 (287)
T PRK12335 257 YN 258 (287)
T ss_pred Ee
Confidence 74
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-15 Score=141.66 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=117.7
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
...+++.+.++++.+|||||||+|.+++.++++ ++.+++++|+ +.+++.+++++...++.+++++..+ |+.+.+
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~-d~~~~~--- 212 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAV-DIYKES--- 212 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEec-CccCCC---
Confidence 345677778888899999999999999999988 6789999998 7899999999999999889999999 987644
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCC------CCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGC------LPS 325 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~------lp~ 325 (381)
+ ..+|+|+...++++++++....+++++.+.|+|||++++......... .....+...++.+.+. .+.
T Consensus 213 ---~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T TIGR02716 213 ---Y--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFDYLSHYILGAGMPFSVLGFKE 286 (306)
T ss_pred ---C--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-CchhhHHHHHHHHcccccccccCCC
Confidence 2 247999999999998776678899999999999999877632111111 1112233333333221 233
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 047022 326 LRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 326 ~~~~~~~l~~~~Gf~v~~ 343 (381)
..++. .+.+++||+.+.
T Consensus 287 ~~e~~-~ll~~aGf~~v~ 303 (306)
T TIGR02716 287 QARYK-EILESLGYKDVT 303 (306)
T ss_pred HHHHH-HHHHHcCCCeeE
Confidence 45664 445568998654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-15 Score=139.19 Aligned_cols=147 Identities=26% Similarity=0.294 Sum_probs=102.3
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEecCccccCcCCccccCCCc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL----QDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl----~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.++++....+. ..++++... |+.+++ ++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~-Dl~~l~---------~~ 212 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN-DLESLS---------GK 212 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc-chhhcC---------CC
Confidence 5789999999999999999985 88999999999999999999876522 235788888 876554 78
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCC------CCCCHHHHHHHH
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSG------CLPSLRRVTSAM 333 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg------~lp~~~~~~~~l 333 (381)
||+|+|..+++|++++....+++.+.+ +.+||.++...+.... ......+.. .+|+. ++.+.+++.+.+
T Consensus 213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~---~~~l~~~g~-~~~g~~~~~r~y~~s~eel~~lL 287 (315)
T PLN02585 213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLY---YDILKRIGE-LFPGPSKATRAYLHAEADVERAL 287 (315)
T ss_pred cCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchH---HHHHHHHHh-hcCCCCcCceeeeCCHHHHHHHH
Confidence 999999999999987666677777775 4555554433332110 000111111 23432 344677775554
Q ss_pred HhcCCcEEEEEEec
Q 047022 334 TSSSRLCVEHLENI 347 (381)
Q Consensus 334 ~~~~Gf~v~~~~~~ 347 (381)
+++||++...+..
T Consensus 288 -~~AGf~v~~~~~~ 300 (315)
T PLN02585 288 -KKAGWKVARREMT 300 (315)
T ss_pred -HHCCCEEEEEEEe
Confidence 4599999865543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.4e-15 Score=128.98 Aligned_cols=112 Identities=19% Similarity=0.304 Sum_probs=92.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.++.-++.++||+|||.|..+.++|++ |..|+++|+|+..++.+++.+...+++ |+.... |+.+..
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~-Dl~~~~------ 90 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVA-DLNDFD------ 90 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE--BGCCBS------
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEe-cchhcc------
Confidence 4555566556779999999999999999996 999999999999999999998888876 999999 987766
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+.||+|+|..++.|+..+..+.+++.+.+.++|||++++.
T Consensus 91 -~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 91 -FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp --TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred -ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 347899999999999999888999999999999999996663
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=127.04 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=89.0
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
++++.+|||+|||+|..++.+++. ++++|+++|+|+.+++.|+++....++. ++++..+ |+.+++ ..++|
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~-d~~~~~-------~~~~f 113 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHG-RAEEFG-------QEEKF 113 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEec-cHhhCC-------CCCCc
Confidence 345889999999999999998875 6789999999999999999999999986 5999999 998876 25789
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
|+|++.. + .+++.+++.+.++|||||++++..+
T Consensus 114 DlV~~~~----~--~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 114 DVVTSRA----V--ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred cEEEEcc----c--cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 9999974 2 3568899999999999999877643
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-15 Score=134.16 Aligned_cols=177 Identities=24% Similarity=0.380 Sum_probs=127.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
..+..+...+...++.+|||||||+|.++..+++. +++++++|+++.+++.+++++...+. ++++... +..+.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~-~~~~~~~- 109 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQT-TAEELAA- 109 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEec-CHHHhhh-
Confidence 33445555555667899999999999999999885 88999999999999999998876654 4788888 8776641
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC---chhhhhhhccC-----CCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL---GPGFIKEYIFP-----SGC 322 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~---~~~~i~~yi~p-----gg~ 322 (381)
...++||+|++..+++|++ +...+++.+.+.|+|||.++++.+......... ...++... .+ ...
T Consensus 110 ----~~~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 182 (233)
T PRK05134 110 ----EHPGQFDVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRM-LPKGTHDYKK 182 (233)
T ss_pred ----hcCCCccEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhh-cCcccCchhh
Confidence 2347899999999999994 578999999999999999888876432111000 00011111 11 123
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHHHHHH
Q 047022 323 LPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKF 362 (381)
Q Consensus 323 lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f 362 (381)
.++..++.+.+. ++||+++... +.+|.+....|+.+.
T Consensus 183 ~~~~~~~~~~l~-~~Gf~~v~~~--~~~~~~~~~~~~~~~ 219 (233)
T PRK05134 183 FIKPSELAAWLR-QAGLEVQDIT--GLHYNPLTNRWKLSD 219 (233)
T ss_pred cCCHHHHHHHHH-HCCCeEeeee--eEEechhhcceeecc
Confidence 456667755554 5999998764 456888888887743
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=121.28 Aligned_cols=96 Identities=24% Similarity=0.453 Sum_probs=82.4
Q ss_pred EEEecCCchHHHHHHHHhc--C--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 188 VLEIGCGWGTLAIEIVRQT--G--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 188 VLDiGcG~G~~~~~la~~~--~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
|||+|||+|..+..+++.. + .+++++|+|+++++.++++....+. ++++.+. |+.+++ +..++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~-D~~~l~------~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQA-DARDLP------FSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEES-CTTCHH------HHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEEC-CHhHCc------ccCCCeeEE
Confidence 7999999999999999863 3 7999999999999999999987665 6999999 999887 355799999
Q ss_pred EEch-hhHhhChhcHHHHHHHHHhccccCc
Q 047022 264 FICG-MIEAVGHDYMEELFSCCESLLAENG 292 (381)
Q Consensus 264 vs~~-~l~~~~~~~~~~~l~~~~~~LkpgG 292 (381)
++.+ +++|+.+++...+++++.++|||||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9955 4999998899999999999999998
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=117.99 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=93.9
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
...+++.+.+.++.+|||+|||+|.++..++++ ++.+|+++|+|+.+++.+++++...++. ++++... |+....+
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~-~~~~~~~-- 83 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEG-DAPEALE-- 83 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEec-cccccCh--
Confidence 345777788888899999999999999999987 4679999999999999999998887775 7888888 8764321
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...++||.|++.....+ ...+++.+.+.|||||.++++.
T Consensus 84 ---~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 ---DSLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ---hhcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEEe
Confidence 12368999999765443 4689999999999999988865
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-14 Score=129.57 Aligned_cols=119 Identities=20% Similarity=0.261 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCC---CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc
Q 047022 169 QIRKVSVLIEKVKL---VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV 244 (381)
Q Consensus 169 q~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~ 244 (381)
|......+++.+.. ..+.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.. +++.+..+ |.
T Consensus 16 q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~-d~ 89 (240)
T TIGR02072 16 QREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICG-DA 89 (240)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEec-ch
Confidence 44444444444432 34579999999999999999887 45689999999999999988753 37889999 99
Q ss_pred cccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
.+.+ +++++||+|++..+++|+ .++..+++++.++|+|||.++++.+..
T Consensus 90 ~~~~------~~~~~fD~vi~~~~l~~~--~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 90 EKLP------LEDSSFDLIVSNLALQWC--DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhCC------CCCCceeEEEEhhhhhhc--cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 8876 456889999999999999 458899999999999999998887543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-14 Score=125.69 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=85.4
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||+|||+|.++..++.. ++++|+++|+|+++++.++++++..++. +++++.+ |+.++. ..++||+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~-d~~~~~-------~~~~fD~ 112 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNG-RAEDFQ-------HEEQFDV 112 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEec-chhhcc-------ccCCccE
Confidence 4789999999999999998865 4579999999999999999999888875 6999999 998865 3478999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|++.. ++ ++..+++.+.++|+|||.+++..
T Consensus 113 I~s~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 113 ITSRA-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred EEehh-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 99975 33 35778899999999999988764
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.7e-15 Score=127.60 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=119.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+-...++..+.+.+..+|.|+|||+|..+..++++ +++.++|+|-|++|++.|+++. .+++|..+ |+.+..
T Consensus 17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~a-Dl~~w~- 88 (257)
T COG4106 17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEA-DLRTWK- 88 (257)
T ss_pred CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecc-cHhhcC-
Confidence 33457788888888899999999999999999999 8999999999999999998874 37899999 999987
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC-------CchhhhhhhccC---
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS-------LGPGFIKEYIFP--- 319 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~-------~~~~~i~~yi~p--- 319 (381)
+...+|+++++.+++++++ ...+|.++...|.|||.+.+..|++.-+... ....|-..+--+
T Consensus 89 ------p~~~~dllfaNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~ 160 (257)
T COG4106 89 ------PEQPTDLLFANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLT 160 (257)
T ss_pred ------CCCccchhhhhhhhhhccc--cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccc
Confidence 4578999999999999964 6899999999999999999999886533221 112333332211
Q ss_pred CCCCCCHHHHHHHHHh
Q 047022 320 SGCLPSLRRVTSAMTS 335 (381)
Q Consensus 320 gg~lp~~~~~~~~l~~ 335 (381)
+..+|++....+.+..
T Consensus 161 r~~v~s~a~Yy~lLa~ 176 (257)
T COG4106 161 RAPLPSPAAYYELLAP 176 (257)
T ss_pred cCCCCCHHHHHHHhCc
Confidence 3457888888777654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-14 Score=127.11 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
....+++.+.++++++|||||||+|..+..+++.. +.+|+++|+++++++.|++++...++..++++..+ |..+..+
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~-d~~~~~~ 138 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG-DGKRGLE 138 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC-CcccCCc
Confidence 35567788888899999999999999999988763 46999999999999999999998888767999999 9876541
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|++...+++++ +++.+.|+|||++++....
T Consensus 139 ------~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 139 ------KHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred ------cCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEEcC
Confidence 346899999998888774 3577899999998876543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=127.57 Aligned_cols=163 Identities=18% Similarity=0.166 Sum_probs=109.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
-|.+++...+..-.|.+|||||||.|.++..++.+....|+|+|.+.......+....-.|....+..... -+++++
T Consensus 102 ~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl-gvE~Lp-- 178 (315)
T PF08003_consen 102 WKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL-GVEDLP-- 178 (315)
T ss_pred chHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCc-chhhcc--
Confidence 35567777775557899999999999999999987334699999998766554332222233323444434 566776
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC---CCCCCCCCCchhhhhhhc-cCC-CCCCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP---DQCYDEHSLGPGFIKEYI-FPS-GCLPS 325 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~---~~~~~~~~~~~~~i~~yi-~pg-g~lp~ 325 (381)
..+.||.|+|.+++.|. .++-..+++++..|+|||.+++.+- .......... .+|- .++ -.+|+
T Consensus 179 -----~~~~FDtVF~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~----~rYa~m~nv~FiPs 247 (315)
T PF08003_consen 179 -----NLGAFDTVFSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE----DRYAKMRNVWFIPS 247 (315)
T ss_pred -----ccCCcCEEEEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC----CcccCCCceEEeCC
Confidence 25889999999999999 6799999999999999999775431 1110000000 0110 011 14789
Q ss_pred HHHHHHHHHhcCCcEEEEEEecc
Q 047022 326 LRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 326 ~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
...+...+ +++||+-+.+-+..
T Consensus 248 ~~~L~~wl-~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 248 VAALKNWL-ERAGFKDVRCVDVS 269 (315)
T ss_pred HHHHHHHH-HHcCCceEEEecCc
Confidence 98885554 46999887765543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=122.51 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=90.0
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCCeEEEEe
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL--------------QDTSDYIFV 241 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl--------------~~~i~~~~~ 241 (381)
.+..+.+.++.+|||+|||.|..+..+|++ |..|+|+|+|+..++.+.+.. ++ ..++++.++
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeeecCceEEEEc
Confidence 344444457789999999999999999996 999999999999999764321 21 236899999
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
|+.+++++ ..++||.|+...+++|++++....+++.+.++|||||++++
T Consensus 102 -D~~~~~~~-----~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 102 -DFFALTAA-----DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -cCCCCCcc-----cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 99887621 23679999999999999988889999999999999998443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-14 Score=125.67 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecC
Q 047022 165 LEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT 243 (381)
Q Consensus 165 l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d 243 (381)
+..+....+..++..+ .++.+|||+|||+|.++..+++. ++.+++|+|+|+++++.|+++. .++.+..+ |
T Consensus 26 ~~~~~~~~~~~~l~~~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~-d 96 (204)
T TIGR03587 26 LVAAKLAMFARALNRL--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQG-S 96 (204)
T ss_pred HHHHHHHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEe-e
Confidence 3333344444555544 46789999999999999999886 5789999999999999998764 25778888 8
Q ss_pred ccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 244 VNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 244 ~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+.+ + +.+++||+|++.++++|+++++...+++++.+++ ++.++|+.
T Consensus 97 ~~~-~------~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 97 LFD-P------FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred ccC-C------CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 776 4 4568999999999999998778899999999997 45666554
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.1e-14 Score=121.65 Aligned_cols=156 Identities=14% Similarity=0.163 Sum_probs=117.0
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.|.+. ++||.+|||+|||.|.+..++.+..++...|+|++++.+..+.++ | +.++++ |+.+- |..
T Consensus 6 ~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~-Dld~g----L~~ 70 (193)
T PF07021_consen 6 IIAEW--IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQG-DLDEG----LAD 70 (193)
T ss_pred HHHHH--cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEEC-CHHHh----Hhh
Confidence 44554 458999999999999999999887899999999999988877765 3 668899 88653 235
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC---------Cchhh--hhhhccCCCCC
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS---------LGPGF--IKEYIFPSGCL 323 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~---------~~~~~--i~~yi~pgg~l 323 (381)
+++++||.||.+.+++++ .++..+++++.|+ |...+++.|+..+-..+ +..+. ..-|-.|+-++
T Consensus 71 f~d~sFD~VIlsqtLQ~~--~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~ 145 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAV--RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHL 145 (193)
T ss_pred CCCCCccEEehHhHHHhH--hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCccc
Confidence 789999999999999999 6789998888665 66788999885432110 00000 12244577788
Q ss_pred CCHHHHHHHHHhcCCcEEEEEEecchhH
Q 047022 324 PSLRRVTSAMTSSSRLCVEHLENIETHY 351 (381)
Q Consensus 324 p~~~~~~~~l~~~~Gf~v~~~~~~~~~y 351 (381)
.++.++ +.+.++.|+.+++..-+..+.
T Consensus 146 ~Ti~DF-e~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 146 CTIKDF-EDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred ccHHHH-HHHHHHCCCEEEEEEEEcCCC
Confidence 889888 555556899998877665544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=120.77 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=90.4
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.++..+.+.++.+|||+|||+|.+++.+++. ++.+|+++|+|+.+++.+++++...++. ++++..+ |... .
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~-d~~~-~----- 93 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPG-EAPI-E----- 93 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEec-Cchh-h-----
Confidence 4567777788999999999999999999886 4679999999999999999999887774 7999988 8742 2
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..++||+|++.....+ +..+++.+.++|+|||++++..
T Consensus 94 --~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 94 --LPGKADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred --cCcCCCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEE
Confidence 2368999999765433 4678999999999999987753
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=123.72 Aligned_cols=154 Identities=24% Similarity=0.334 Sum_probs=111.3
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+.. ++++... |+.+.+.. ..++||+|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~-d~~~~~~~-----~~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCT-SVEDLAEK-----GAKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeC-CHHHhhcC-----CCCCccEE
Confidence 4789999999999999998885 778999999999999999988776653 5888888 88776511 23789999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC---chhhhhhhccCCC----CCCCHHHHHHHHHhc
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL---GPGFIKEYIFPSG----CLPSLRRVTSAMTSS 336 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~---~~~~i~~yi~pgg----~lp~~~~~~~~l~~~ 336 (381)
++..+++|+ .++..+++.+.++|+|||.++++.++........ ...++.....++. ...+..++.+.+. +
T Consensus 117 ~~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~ 193 (224)
T TIGR01983 117 TCMEVLEHV--PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLE-S 193 (224)
T ss_pred EehhHHHhC--CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHH-H
Confidence 999999999 4688999999999999999888776533211000 0011111111111 2345566655554 5
Q ss_pred CCcEEEEEEecc
Q 047022 337 SRLCVEHLENIE 348 (381)
Q Consensus 337 ~Gf~v~~~~~~~ 348 (381)
+||+++++....
T Consensus 194 ~G~~i~~~~~~~ 205 (224)
T TIGR01983 194 AGLRVKDVKGLV 205 (224)
T ss_pred cCCeeeeeeeEE
Confidence 899998877544
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-14 Score=130.30 Aligned_cols=128 Identities=15% Similarity=0.185 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchH----HHHHHHHh-c-----CCEEEEEcCCHHHHHHHHHHHH----H
Q 047022 164 DLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGT----LAIEIVRQ-T-----GCKYTGITLSELQLKYAEIKVK----E 229 (381)
Q Consensus 164 ~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~----~~~~la~~-~-----~~~v~gvDis~~~~~~a~~~~~----~ 229 (381)
.++......+..+++.....++.+|+|+|||+|. +++.+++. . +.+|+|+|+|+.+++.|++.+- .
T Consensus 79 ~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~ 158 (264)
T smart00138 79 HFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPEREL 158 (264)
T ss_pred HHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHH
Confidence 3444434444444444444456899999999996 55556554 1 4689999999999999997531 0
Q ss_pred cC----------------------CCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhc
Q 047022 230 AG----------------------LQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESL 287 (381)
Q Consensus 230 ~g----------------------l~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~ 287 (381)
.+ +..+|+|.+. |..+.+ .+.++||+|+|.+++.|+++++...++++++++
T Consensus 159 ~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~-dl~~~~------~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~ 231 (264)
T smart00138 159 EDLPKALLARYFSRVEDKYRVKPELKERVRFAKH-NLLAES------PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEA 231 (264)
T ss_pred hcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeec-cCCCCC------CccCCCCEEEechhHHhCCHHHHHHHHHHHHHH
Confidence 11 2247899999 998876 245889999999999999877788999999999
Q ss_pred cccCceEEEEc
Q 047022 288 LAENGLSCSTV 298 (381)
Q Consensus 288 LkpgG~~~i~~ 298 (381)
|+|||++++..
T Consensus 232 L~pGG~L~lg~ 242 (264)
T smart00138 232 LKPGGYLFLGH 242 (264)
T ss_pred hCCCeEEEEEC
Confidence 99999998864
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-13 Score=120.51 Aligned_cols=113 Identities=20% Similarity=0.340 Sum_probs=93.4
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+.++.+.++.+|||+|||+|.+++.+++. .+.+|+++|+++.+++.+++++...++.+++++..+ |..+..+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~-d~~~~l~--- 106 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG-EAPEILF--- 106 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe-chhhhHh---
Confidence 4467888889999999999999999998875 346999999999999999999998887678999999 8876421
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...++||+|++.. +..++..+++.+.++|||||++++..
T Consensus 107 --~~~~~~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 107 --TINEKFDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred --hcCCCCCEEEECC-----CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 1236899999863 22457889999999999999988754
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-13 Score=120.81 Aligned_cols=149 Identities=20% Similarity=0.151 Sum_probs=106.9
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCCeEEEE
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL--------------QDTSDYIF 240 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl--------------~~~i~~~~ 240 (381)
..+..+.+.++.+|||+|||.|..+..+|++ |.+|+|+|+|+..++.+.+. .++ ..+|++.+
T Consensus 28 ~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~ 103 (218)
T PRK13255 28 KYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYC 103 (218)
T ss_pred HHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEE
Confidence 3444445567789999999999999999995 99999999999999976432 222 24789999
Q ss_pred ecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce-EEEEcCCCCCCCCCCchhhhhhhccC
Q 047022 241 VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL-SCSTVPDQCYDEHSLGPGFIKEYIFP 319 (381)
Q Consensus 241 ~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~-~~i~~~~~~~~~~~~~~~~i~~yi~p 319 (381)
+ |+.++++. ..+.||.|+...+++|++++....+++.+.++|+|||+ ++++..... ..... .|
T Consensus 104 ~-D~~~l~~~-----~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~-~~~~g---------Pp 167 (218)
T PRK13255 104 G-DFFALTAA-----DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQ-EELAG---------PP 167 (218)
T ss_pred C-cccCCCcc-----cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCC-ccCCC---------CC
Confidence 9 99888622 23689999999999999988889999999999999997 443332111 11000 01
Q ss_pred CCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 320 SGCLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 320 gg~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
...+.+++.+.+ . .+|.+...+..
T Consensus 168 --~~~~~~el~~~~-~-~~~~i~~~~~~ 191 (218)
T PRK13255 168 --FSVSDEEVEALY-A-GCFEIELLERQ 191 (218)
T ss_pred --CCCCHHHHHHHh-c-CCceEEEeeec
Confidence 234667775544 2 34777766553
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.52 E-value=9e-16 Score=121.67 Aligned_cols=98 Identities=23% Similarity=0.346 Sum_probs=64.4
Q ss_pred EEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEch
Q 047022 189 LEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICG 267 (381)
Q Consensus 189 LDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~ 267 (381)
||||||+|.++..++++ ++.+++++|+|+.|++.++++....+.. +...... +..+... ....++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~-~~~~~~~----~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRF-DVLDLFD----YDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE---SSS-------CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEe-ecCChhh----cccccccceehhhh
Confidence 79999999999999887 6789999999999999999998876543 3333333 2222210 01225999999999
Q ss_pred hhHhhChhcHHHHHHHHHhccccCceE
Q 047022 268 MIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 268 ~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
+++|+ +++..+++++.++|||||.+
T Consensus 75 vl~~l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHL--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS----S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhh--hhHHHHHHHHHHHcCCCCCC
Confidence 99999 67899999999999999974
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=117.15 Aligned_cols=128 Identities=21% Similarity=0.328 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHcC---CCCCC-EEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEec
Q 047022 168 GQIRKVSVLIEKVK---LVKGQ-EVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242 (381)
Q Consensus 168 aq~~~~~~l~~~l~---~~~~~-~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~ 242 (381)
|+.+.++.+.+... +.... +|||+|||.|.+...+++. .....+|+|.|+..++.|+..++..++++.|+|.+.
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~- 125 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL- 125 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe-
Confidence 55666666666554 44443 9999999999999999997 445799999999999999999999999988999999
Q ss_pred CccccCcCCccccCCCcccEEEEchhhHhhCh------hcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 243 TVNCLKPTNMTELFLGNFSTVFICGMIEAVGH------DYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 243 d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~------~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
|+.+.. +..++||+|.--+.+..++- ..+..|+..+.++|+|||+++|+.+++.
T Consensus 126 DI~~~~------~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 126 DITDPD------FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred eccCCc------ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 998754 56789999998777665532 1245788999999999999999987754
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-13 Score=123.51 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=106.8
Q ss_pred cccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCH
Q 047022 139 NELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSE 217 (381)
Q Consensus 139 ~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~ 217 (381)
++. +...+++.|.|.++..... ...+..+ ... ..++.+|||+|||+|.+++.+++. +. +|+|+|+|+
T Consensus 85 ~~~-~~i~i~p~~afgtg~h~tt--------~~~l~~l-~~~-~~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~ 152 (250)
T PRK00517 85 PDE-INIELDPGMAFGTGTHPTT--------RLCLEAL-EKL-VLPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDP 152 (250)
T ss_pred CCe-EEEEECCCCccCCCCCHHH--------HHHHHHH-Hhh-cCCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCH
Confidence 555 6788899999877765321 1112222 222 357889999999999999988775 54 699999999
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 218 LQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 218 ~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+++.|++++..+++.+++.+..+ + .+||+|+++...+. ...+++++.++|||||.++++
T Consensus 153 ~~l~~A~~n~~~~~~~~~~~~~~~-~--------------~~fD~Vvani~~~~-----~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 153 QAVEAARENAELNGVELNVYLPQG-D--------------LKADVIVANILANP-----LLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred HHHHHHHHHHHHcCCCceEEEccC-C--------------CCcCEEEEcCcHHH-----HHHHHHHHHHhcCCCcEEEEE
Confidence 999999999988776433333222 1 26999999754332 467899999999999998887
Q ss_pred cCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 298 VPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
.... ....++.+.+. +.||.+......
T Consensus 213 gi~~----------------------~~~~~v~~~l~-~~Gf~~~~~~~~ 239 (250)
T PRK00517 213 GILE----------------------EQADEVLEAYE-EAGFTLDEVLER 239 (250)
T ss_pred ECcH----------------------hhHHHHHHHHH-HCCCEEEEEEEe
Confidence 4211 12334445554 489998776543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=138.36 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=95.8
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
...+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++.. +..+++++..+ |+.....
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~-d~~~~~~--- 97 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCA-DVTSPDL--- 97 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEe-ccccccc---
Confidence 346677777667889999999999999999986 779999999999998876532 23357999999 9864210
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.++.++||+|++..+++|++++....+++++.++|||||++++..
T Consensus 98 -~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 98 -NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred -CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 145688999999999999987778899999999999999987754
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-13 Score=117.08 Aligned_cols=137 Identities=16% Similarity=0.177 Sum_probs=101.6
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+.+.+...++.+|||+|||+|.++..+++. +.+|+++|+|+++++.+++++...+. ++++..+ |..+..
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~-d~~~~~------- 79 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMT-DLFKGV------- 79 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEc-cccccc-------
Confidence 334444456679999999999999999986 55999999999999999999987765 5888888 876543
Q ss_pred CCCcccEEEEchhhHhhChh-------------------cHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhh
Q 047022 256 FLGNFSTVFICGMIEAVGHD-------------------YMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEY 316 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~y 316 (381)
.++||+|+++..+.+.++. -...+++++.++|||||.+++..+...
T Consensus 80 -~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-------------- 144 (179)
T TIGR00537 80 -RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-------------- 144 (179)
T ss_pred -CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------------
Confidence 2589999998766544321 146789999999999999877653211
Q ss_pred ccCCCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 317 IFPSGCLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 317 i~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
...++...+. +.||.++.+...
T Consensus 145 --------~~~~~~~~l~-~~gf~~~~~~~~ 166 (179)
T TIGR00537 145 --------GEPDTFDKLD-ERGFRYEIVAER 166 (179)
T ss_pred --------ChHHHHHHHH-hCCCeEEEEEEe
Confidence 1234445554 479988776554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=119.16 Aligned_cols=147 Identities=11% Similarity=0.121 Sum_probs=100.6
Q ss_pred HHcCCCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
+.+.++++.+|||+|||+|.++..+++.. ..+|+++|+++.|++.+.+++... .++.++.+ |....... .. .
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~-D~~~~~~~--~~-l 138 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILA-DARKPERY--AH-V 138 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEEC-CCCCcchh--hh-c
Confidence 35888999999999999999999999873 468999999999999887776543 47899999 87642100 00 1
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhc
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSS 336 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~ 336 (381)
.++||+|++.... +.....+++++.++|||||.++|+++....+ .... |. ....+.++.+. +
T Consensus 139 ~~~~D~i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d-~~~~---------~~---~~~~~~~~~l~-~ 200 (226)
T PRK04266 139 VEKVDVIYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLLAIKARSID-VTKD---------PK---EIFKEEIRKLE-E 200 (226)
T ss_pred cccCCEEEECCCC----hhHHHHHHHHHHHhcCCCcEEEEEEeccccc-CcCC---------HH---HHHHHHHHHHH-H
Confidence 2569999975211 1123456899999999999999876542211 1110 00 00123344444 5
Q ss_pred CCcEEEEEEecch
Q 047022 337 SRLCVEHLENIET 349 (381)
Q Consensus 337 ~Gf~v~~~~~~~~ 349 (381)
+||+++..+++.+
T Consensus 201 aGF~~i~~~~l~p 213 (226)
T PRK04266 201 GGFEILEVVDLEP 213 (226)
T ss_pred cCCeEEEEEcCCC
Confidence 8999999888754
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-13 Score=122.22 Aligned_cols=114 Identities=19% Similarity=0.180 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
-.....+++.+.++++++|||||||+|.++..+++.. +.+|+++|+++++++.+++++...++. ++++..+ |....
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~g-d~~~~ 139 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVG-DGTLG 139 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEEC-CcccC
Confidence 3455678888889999999999999999999988763 369999999999999999999988874 7999999 98665
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
. ...++||+|++....++++ +.+.+.|||||++++...
T Consensus 140 ~------~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 140 Y------EENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred C------CcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEEc
Confidence 4 1347899999987665542 346678999999877653
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=127.35 Aligned_cols=132 Identities=17% Similarity=0.319 Sum_probs=100.3
Q ss_pred cccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHH
Q 047022 143 FFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKY 222 (381)
Q Consensus 143 y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~ 222 (381)
....+++.|.|.++.... .+....+++.+ ..++.+|||+|||+|.+++.+++....+|+++|+|+.+++.
T Consensus 128 ~~i~ldpg~aFgtG~h~t---------t~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~ 197 (288)
T TIGR00406 128 LIIMLDPGLAFGTGTHPT---------TSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES 197 (288)
T ss_pred EEEEECCCCcccCCCCHH---------HHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 556788888887665532 22222333433 34779999999999999998887533589999999999999
Q ss_pred HHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 223 AEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 223 a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|++++..+++.+++.+... +.... ..++||+|+++...+. ...++.++.++|||||.++++.
T Consensus 198 a~~n~~~n~~~~~~~~~~~-~~~~~--------~~~~fDlVvan~~~~~-----l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 198 ARKNAELNQVSDRLQVKLI-YLEQP--------IEGKADVIVANILAEV-----IKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred HHHHHHHcCCCcceEEEec-ccccc--------cCCCceEEEEecCHHH-----HHHHHHHHHHHcCCCcEEEEEe
Confidence 9999998888777777776 63222 3478999999865443 4678999999999999988874
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.7e-14 Score=121.31 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=90.5
Q ss_pred HHHHHHHH-HcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIE-KVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~-~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+|...++. .+.-..-.++||+|||.|.++..++.+ ..+++++|+|+..++.|++++... ++|++.+. |+.+..
T Consensus 29 ~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~-dvp~~~- 102 (201)
T PF05401_consen 29 RKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQA-DVPEFW- 102 (201)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES--TTT---
T ss_pred HHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEEC-cCCCCC-
Confidence 34444444 566566689999999999999999997 569999999999999999998643 48999999 887665
Q ss_pred CCccccCCCcccEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEEEEc
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGH-DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+.++||+|+.+++++++.+ +++..+++.+...|+|||.+++..
T Consensus 103 ------P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 103 ------PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ------CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5689999999999999975 578899999999999999988865
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.1e-13 Score=123.29 Aligned_cols=132 Identities=22% Similarity=0.288 Sum_probs=97.5
Q ss_pred cccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHH
Q 047022 143 FFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLK 221 (381)
Q Consensus 143 y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~ 221 (381)
-..-+|+.|.|-.|..++. ...-..++++ .+++.+|||+|||+|-+++.+++- |+ +++|+|++|..++
T Consensus 131 ~~i~lDPGlAFGTG~HpTT---------~lcL~~Le~~-~~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~ 199 (300)
T COG2264 131 LNIELDPGLAFGTGTHPTT---------SLCLEALEKL-LKKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVE 199 (300)
T ss_pred eEEEEccccccCCCCChhH---------HHHHHHHHHh-hcCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHH
Confidence 4567888888876655442 2222333333 248899999999999999999984 76 5999999999999
Q ss_pred HHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 222 YAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 222 ~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.|++++..+++...++.... +....+ ..++||+||++- +..+ ...+...+.+.|||||+++++.
T Consensus 200 aa~eNa~~N~v~~~~~~~~~-~~~~~~-------~~~~~DvIVANI-LA~v----l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 200 AARENARLNGVELLVQAKGF-LLLEVP-------ENGPFDVIVANI-LAEV----LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred HHHHHHHHcCCchhhhcccc-cchhhc-------ccCcccEEEehh-hHHH----HHHHHHHHHHHcCCCceEEEEe
Confidence 99999999988743333333 333333 336999999985 3333 4788899999999999988874
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=119.88 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=89.1
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSD-YIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~-~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
..|||+|||+|..-.+.--.++++|+++|+++.|-+++.+.+.++. +.++. |.++ +.++++ .+++++||.||
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva-~ge~l~-----~l~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVA-DGENLP-----QLADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEee-chhcCc-----ccccCCeeeEE
Confidence 4689999999998877765578999999999999999999998873 44676 8999 999988 45789999999
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+..+++.+ +++.+.++++.++|||||++++
T Consensus 151 ~TlvLCSv--e~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 151 CTLVLCSV--EDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred EEEEEecc--CCHHHHHHHHHHhcCCCcEEEE
Confidence 99999988 7799999999999999999554
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-13 Score=121.45 Aligned_cols=114 Identities=21% Similarity=0.208 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..+..+++.+.++++.+|||||||+|.++..+++.. ..+|+++|+++++++.|++++...++ +++++..+ |..+..
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~-d~~~~~ 141 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVG-DGTQGW 141 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEEC-CcccCC
Confidence 344577788888999999999999999999998873 34799999999999999999999888 48999999 987654
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+ ...+||+|++.....+++ +.+.+.|+|||++++....
T Consensus 142 ~------~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 142 E------PLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPVGE 179 (215)
T ss_pred c------ccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEEcC
Confidence 1 236899999986655543 3467889999998876543
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=123.49 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=82.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
.++.+|||+|||+|.++..+++. ++.+|+|+|+|++|++.|+++.... ++++... +...++ ..+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~-~~~~l~------~~~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQA-VSDELV------AEG 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEE-eccccc------ccC
Confidence 56789999999999999888753 2469999999999999998875432 4667666 666665 245
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++||+|+++.+++|+++++...+++++.++++ |.+++..
T Consensus 128 ~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 78999999999999987667789999999998 4545443
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.1e-13 Score=115.11 Aligned_cols=106 Identities=20% Similarity=0.361 Sum_probs=86.4
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||+|||+|.+++.++++ +..+|+++|+|+.+++.+++++..+++.+ +++... |..+.. ..++||+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~-d~~~~~-------~~~~fD~ 101 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQS-DLFEAL-------PDGKFDL 101 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEES-STTTTC-------CTTCEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccc-cccccc-------cccceeE
Confidence 6779999999999999999997 44589999999999999999999999875 999999 886644 4589999
Q ss_pred EEEchhhHhhCh---hcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICGMIEAVGH---DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~~l~~~~~---~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|+|+--++.-.. .-...+++.+.+.|||||.+++..
T Consensus 102 Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 102 IVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp EEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 999854432221 236789999999999999987654
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=114.58 Aligned_cols=152 Identities=15% Similarity=0.166 Sum_probs=103.7
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l 252 (381)
+.+.+.+ +++.+|||+|||+|.++..+++..+..++|+|+|+++++.++++ ++++..+ |+.+ ++
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~-d~~~~l~---- 69 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQG-DLDEGLE---- 69 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEE-Ehhhccc----
Confidence 3444444 47789999999999999998876677899999999999888642 4678888 8765 32
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC-----C-chhhhhh--hc---cCCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS-----L-GPGFIKE--YI---FPSG 321 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~-----~-~~~~i~~--yi---~pgg 321 (381)
.+.+++||+|+++.+++|+ .++..+++++.+.++ ..+++.|+..+.... . ....... |. .|..
T Consensus 70 -~~~~~sfD~Vi~~~~l~~~--~d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (194)
T TIGR02081 70 -AFPDKSFDYVILSQTLQAT--RNPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNI 143 (194)
T ss_pred -ccCCCCcCEEEEhhHhHcC--cCHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCc
Confidence 1345789999999999999 468888888877655 456666654321100 0 0000010 00 1223
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 322 CLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 322 ~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
..++..++.+.+ +++||++++...+
T Consensus 144 ~~~s~~~~~~ll-~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 144 HFCTIADFEDLC-GELNLRILDRAAF 168 (194)
T ss_pred ccCcHHHHHHHH-HHCCCEEEEEEEe
Confidence 467888886554 4699999887665
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=121.60 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=88.5
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~~~~~~fD 261 (381)
++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++...++ .++++..+ |+ ..++. .+..++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~-d~~~~l~~----~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCG-DAVEVLLD----MFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEec-CHHHHHHH----HcCccccc
Confidence 5679999999999999999886 567999999999999999999988777 47999999 98 55431 12457899
Q ss_pred EEEEchhhHhhC------hhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVG------HDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~------~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+|++.....+.. ......+++++.++|||||.++++.+.
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 999875432211 112478999999999999999988654
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-13 Score=124.01 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=92.8
Q ss_pred HHcCCCCCCEEEEecCCchHHHHH-HH-Hh-cCCEEEEEcCCHHHHHHHHHHHHH-cCCCCCeEEEEecCccccCcCCcc
Q 047022 178 EKVKLVKGQEVLEIGCGWGTLAIE-IV-RQ-TGCKYTGITLSELQLKYAEIKVKE-AGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~G~~~~~-la-~~-~~~~v~gvDis~~~~~~a~~~~~~-~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..+...++.+|+|||||.|.++.. ++ .. ++++++++|+++++++.|++.+.. .++.++++|..+ |+.+..+
T Consensus 117 ~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~-Da~~~~~---- 191 (296)
T PLN03075 117 SQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA-DVMDVTE---- 191 (296)
T ss_pred HHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC-chhhccc----
Confidence 333334678999999998755433 33 23 678999999999999999999964 788889999999 9987641
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..+.||+|++. ++.++..++...+++.+.+.|+|||.+++...
T Consensus 192 --~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 192 --SLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred --ccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 24789999999 88888667899999999999999999988763
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.6e-13 Score=127.34 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=95.2
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.++....++++.+|||+|||+|.+++.++. .+.+++|+|+++.|++.++++++..++.+ +++..+ |+.+++
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~-D~~~l~------ 243 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRG-DATKLP------ 243 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEec-chhcCC------
Confidence 455566778999999999999999998877 58999999999999999999999988874 899999 999887
Q ss_pred cCCCcccEEEEchhhH-------hhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 255 LFLGNFSTVFICGMIE-------AVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~-------~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+..++||+|+++-... +.....+..+++++.++|||||++++..++
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 3457899999963211 111123578999999999999998887764
|
This family is found exclusively in the Archaea. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-13 Score=134.76 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=91.6
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
...++.+|||+|||+|.++..+++. ++.+++|+|+|+.|++.|+++....+ .++++..+ |..+++. .+++++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~g-Da~dLp~----~fedeS 487 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKG-DAINLSS----SFEKES 487 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEc-chHhCcc----ccCCCC
Confidence 3446889999999999999888876 67899999999999999998876544 35888889 8877641 145688
Q ss_pred ccEEEEchhhHhhC-----------hhcHHHHHHHHHhccccCceEEEEc
Q 047022 260 FSTVFICGMIEAVG-----------HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~l~~~~-----------~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
||+|+++.+++++. .++...+++++.++|||||.+++..
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999999988762 3467899999999999999988864
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6e-12 Score=114.84 Aligned_cols=116 Identities=19% Similarity=0.191 Sum_probs=89.0
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+...+..+.+.++.+|||+|||+|.++..+++. +. +++++|+|+.+++.+++++...++ ++++..+ |+.+..
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~-d~~~~~--- 97 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRG-DWARAV--- 97 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEEC-chhhhc---
Confidence 334556666778899999999999999999885 54 999999999999999999887765 4888888 886543
Q ss_pred ccccCCCcccEEEEchhhHhhC-------------------hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 252 MTELFLGNFSTVFICGMIEAVG-------------------HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~-------------------~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|+++--..... ...+..+++++.++|||||++++...
T Consensus 98 ----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 98 ----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 347899999973211110 01246688999999999999877543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.8e-13 Score=123.80 Aligned_cols=132 Identities=25% Similarity=0.355 Sum_probs=96.6
Q ss_pred cccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCH
Q 047022 139 NELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSE 217 (381)
Q Consensus 139 ~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~ 217 (381)
.+. ....+++.|.|-+|..++ .+..-.+++.+ ..++.+|||+|||+|.+++.+++. |+ +|+++|++|
T Consensus 127 ~~~-~~I~idPg~AFGTG~H~T---------T~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp 194 (295)
T PF06325_consen 127 PDE-IVIEIDPGMAFGTGHHPT---------TRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDP 194 (295)
T ss_dssp TTS-EEEEESTTSSS-SSHCHH---------HHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSC
T ss_pred CCc-EEEEECCCCcccCCCCHH---------HHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCH
Confidence 444 567889999887665432 33333444444 467889999999999999999985 65 799999999
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 218 LQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 218 ~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..++.|++++..+++.+++.+. ...+. ..++||+|+++-...- +...+..+.++|+|||.++++
T Consensus 195 ~Av~~a~~N~~~N~~~~~~~v~---~~~~~--------~~~~~dlvvANI~~~v-----L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 195 LAVEAARENAELNGVEDRIEVS---LSEDL--------VEGKFDLVVANILADV-----LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp HHHHHHHHHHHHTT-TTCEEES---CTSCT--------CCS-EEEEEEES-HHH-----HHHHHHHCHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeeEEEE---Eeccc--------ccccCCEEEECCCHHH-----HHHHHHHHHHhhCCCCEEEEc
Confidence 9999999999999998766553 22222 2388999999844433 467888899999999998887
Q ss_pred c
Q 047022 298 V 298 (381)
Q Consensus 298 ~ 298 (381)
.
T Consensus 259 G 259 (295)
T PF06325_consen 259 G 259 (295)
T ss_dssp E
T ss_pred c
Confidence 4
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.1e-12 Score=111.17 Aligned_cols=115 Identities=18% Similarity=0.228 Sum_probs=89.7
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEecCccccCcCCccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT-SDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~-i~~~~~~d~~~l~~~~l~~ 254 (381)
+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+++++.+++++...++.++ +.+..+ |..+..
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~~~------ 86 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRS-DLFEPF------ 86 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEec-cccccc------
Confidence 344444467889999999999999999987 89999999999999999999988777544 888888 876533
Q ss_pred cCCCcccEEEEchhhHhhC-------------------hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 255 LFLGNFSTVFICGMIEAVG-------------------HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~-------------------~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|+++..+.+.+ ...+..+++++.++|||||.+++..+
T Consensus 87 -~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 87 -RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred -cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 335899999865432210 12256789999999999999877653
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=125.72 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=98.7
Q ss_pred eecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 047022 154 SCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGL 232 (381)
Q Consensus 154 s~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl 232 (381)
.++.|+...-+ .. -+.+++.+....+.+|||+|||+|.+++.++++ ++.+|+++|+|+.+++.+++++..++.
T Consensus 204 ~~gVFs~~~LD--~G----trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 204 HANVFSRTGLD--IG----ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 277 (378)
T ss_pred cCCccCCCCcC--hH----HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 36777654322 22 224666776555679999999999999999987 678999999999999999999987764
Q ss_pred C--CCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhh---ChhcHHHHHHHHHhccccCceEEEEc
Q 047022 233 Q--DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAV---GHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 233 ~--~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~---~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
. .++++... |..+.. ..++||+|+|+-.++.. .+.....+|+.+.++|+|||.+++..
T Consensus 278 ~~~~~v~~~~~-D~l~~~-------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 278 EALDRCEFMIN-NALSGV-------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCceEEEEEc-cccccC-------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 36888888 865422 33689999998665432 22235688999999999999988775
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=117.45 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=100.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+..........+|||+|||.|.+++.++++ ..+++++||+++++.+.|+++++.+++.++|+++.. |+.+....
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~-Di~~~~~~--- 110 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEA-DIKEFLKA--- 110 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehh-hHHHhhhc---
Confidence 3445555666789999999999999999998 559999999999999999999999999999999999 99887632
Q ss_pred ccCCCcccEEEEchhh----------------HhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 254 ELFLGNFSTVFICGMI----------------EAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l----------------~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
....+||+|+|+--+ .|...-+.+++++.+.++|||||.+.+..+..+
T Consensus 111 -~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er 174 (248)
T COG4123 111 -LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER 174 (248)
T ss_pred -ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH
Confidence 344679999996422 232223578999999999999999888776544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.2e-14 Score=123.11 Aligned_cols=183 Identities=27% Similarity=0.332 Sum_probs=126.9
Q ss_pred HhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC
Q 047022 129 RHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC 208 (381)
Q Consensus 129 ~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~ 208 (381)
.=|..-||...+. |...+-....|+- -.++..++.+++..+-.++||+|||||-....+-.. -.
T Consensus 85 aYVe~LFD~~Ae~-Fd~~LVdkL~Y~v--------------P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~ 148 (287)
T COG4976 85 AYVETLFDQYAER-FDHILVDKLGYSV--------------PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-AD 148 (287)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhcCcc--------------HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-Hh
Confidence 3466677777777 7777766666642 245667788888778889999999999998887664 56
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhcc
Q 047022 209 KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLL 288 (381)
Q Consensus 209 ~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~L 288 (381)
+++|+|||.+|++.|.++ |+.+. ..+. +.....+. ....+||+|++..++.+++ +++.+|-.+...|
T Consensus 149 ~ltGvDiS~nMl~kA~eK----g~YD~--L~~A-ea~~Fl~~----~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L 215 (287)
T COG4976 149 RLTGVDISENMLAKAHEK----GLYDT--LYVA-EAVLFLED----LTQERFDLIVAADVLPYLG--ALEGLFAGAAGLL 215 (287)
T ss_pred hccCCchhHHHHHHHHhc----cchHH--HHHH-HHHHHhhh----ccCCcccchhhhhHHHhhc--chhhHHHHHHHhc
Confidence 899999999999999876 33221 1222 32211110 1347899999999999996 5899999999999
Q ss_pred ccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 289 AENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 289 kpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
+|||.+.+++.+-.-. ..|. +-|.-........+..+.+..||+++.++...
T Consensus 216 ~~gGlfaFSvE~l~~~-----~~f~---l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 216 APGGLFAFSVETLPDD-----GGFV---LGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred CCCceEEEEecccCCC-----CCee---cchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 9999999987543211 1121 11222222233444566667999999988753
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-13 Score=108.76 Aligned_cols=110 Identities=22% Similarity=0.365 Sum_probs=89.1
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
|.+|||+|||+|.++..+++....+++++|+++..++.++.++...++.+++++..+ |+.+... .+..++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~~~----~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVG-DARDLPE----PLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEES-HHHHHHH----TCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEEC-chhhchh----hccCceeEEEE
Confidence 568999999999999999987338999999999999999999999998889999999 9987641 14568999999
Q ss_pred EchhhHhhC------hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 265 ICGMIEAVG------HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 265 s~~~l~~~~------~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
++--+.... .+....+++++.++|||||.+++.+|
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 976443211 12357889999999999999887664
|
... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=121.18 Aligned_cols=98 Identities=15% Similarity=0.253 Sum_probs=79.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHhc----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQT----GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~----~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
.+..+|||+|||+|.++..+++.. +..++|+|+|+.+++.|+++. .++.+..+ |..+++ +.++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~-d~~~lp------~~~~ 150 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVA-SSHRLP------FADQ 150 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEe-ecccCC------CcCC
Confidence 455789999999999999988752 247999999999999998763 36889999 998887 5678
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
+||+|++... +..++++.++|||||++++..|...
T Consensus 151 sfD~I~~~~~---------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 151 SLDAIIRIYA---------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred ceeEEEEecC---------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 9999999743 2235789999999999888876543
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=115.59 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=98.6
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
++.+.++++++|||+|||+|.++.++++.. ..+|+++|+|+.+.+...+.+... .+|.++.. |++... .+ .
T Consensus 125 ~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~-Da~~p~--~y-~ 197 (293)
T PTZ00146 125 VANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIE-DARYPQ--KY-R 197 (293)
T ss_pred cceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEEC-CccChh--hh-h
Confidence 345668899999999999999999999874 368999999998665554444322 47889999 886421 00 0
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHH----H
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRV----T 330 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~----~ 330 (381)
...++||+|++... . +++...++.++.++|||||.++|........ .-|+++++ +
T Consensus 198 ~~~~~vDvV~~Dva---~-pdq~~il~~na~r~LKpGG~~vI~ika~~id-----------------~g~~pe~~f~~ev 256 (293)
T PTZ00146 198 MLVPMVDVIFADVA---Q-PDQARIVALNAQYFLKNGGHFIISIKANCID-----------------STAKPEVVFASEV 256 (293)
T ss_pred cccCCCCEEEEeCC---C-cchHHHHHHHHHHhccCCCEEEEEEeccccc-----------------cCCCHHHHHHHHH
Confidence 12357999999753 1 2345667788999999999998865332210 11233333 3
Q ss_pred HHHHhcCCcEEEEEEecch
Q 047022 331 SAMTSSSRLCVEHLENIET 349 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~~~ 349 (381)
+.+. ++||++++..++.+
T Consensus 257 ~~L~-~~GF~~~e~v~L~P 274 (293)
T PTZ00146 257 QKLK-KEGLKPKEQLTLEP 274 (293)
T ss_pred HHHH-HcCCceEEEEecCC
Confidence 4454 48999888877654
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.4e-12 Score=117.85 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=87.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||+|||+|.++..++++ ++.+|+++|+|+.+++.|++++...++.+++++..+ |+.+.. +.++||
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~-D~~~~~-------~~~~fD 191 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS-DLFAAL-------PGRKYD 191 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-chhhcc-------CCCCcc
Confidence 34579999999999999999987 568999999999999999999999988778999999 975422 235799
Q ss_pred EEEEch------hhH-------hhCh----------hcHHHHHHHHHhccccCceEEEEcC
Q 047022 262 TVFICG------MIE-------AVGH----------DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 262 ~Ivs~~------~l~-------~~~~----------~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+|+++- .+. |-+. +.+..+++.+.++|+|||++++.+.
T Consensus 192 ~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 192 LIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred EEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999961 111 1110 1246788999999999999988764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.3e-12 Score=111.60 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=89.5
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.+++++...++. ++++..+ |..+...
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~-d~~~~~~---- 104 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEG-SAPECLA---- 104 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEEC-chHHHHh----
Confidence 5677788889999999999999999999865 5689999999999999999999888874 7999999 8754210
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.....+|.|+... ......+++++.++|+|||++++..+
T Consensus 105 -~~~~~~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 105 -QLAPAPDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred -hCCCCCCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 1123467766532 13568899999999999999888764
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.2e-12 Score=113.36 Aligned_cols=111 Identities=19% Similarity=0.151 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
....+++.+.++++.+|||+|||+|..+..+++. ..+++++|+++++++.+++++...++. ++++..+ |..+..
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~-d~~~~~--- 139 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHG-DGWKGW--- 139 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEEC-CcccCC---
Confidence 3446677788889999999999999999988875 569999999999999999999988875 6999999 875532
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...++||+|++...+++++ +.+.+.|+|||++++...
T Consensus 140 ---~~~~~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 ---PAYAPFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred ---CcCCCcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 1237899999987766652 356789999999888765
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.6e-12 Score=121.75 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=89.9
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+++.+......+|||+|||+|.++..++++ ++.+|+++|+|+.+++.+++++..+++. .++... |....
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~-D~~~~------ 257 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFAS-NVFSD------ 257 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEc-ccccc------
Confidence 3445554444568999999999999999987 5679999999999999999999988764 566777 76432
Q ss_pred ccCCCcccEEEEchhhHhhC---hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 254 ELFLGNFSTVFICGMIEAVG---HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~---~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|+|+..+++.. ......+++++.+.|||||.+++...
T Consensus 258 --~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 --IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred --cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 237899999998776532 13467899999999999999877654
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=115.49 Aligned_cols=113 Identities=21% Similarity=0.249 Sum_probs=88.8
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
...+|||||||+|.++..+++. ++..++|+|+++.+++.|++++...++. +++++.+ |+.++... .++.+++|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~-d~~~~~~~---~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCG-DANELLDK---FFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEcc-CHHHHHHh---hCCCCceeE
Confidence 4569999999999999999987 6789999999999999999999888885 8999999 99765311 023468999
Q ss_pred EEEchhhHhhChh------cHHHHHHHHHhccccCceEEEEcCCC
Q 047022 263 VFICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 263 Ivs~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
|++.....+.... ....+++++.++|||||.+++.+...
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 9987543322110 12578999999999999988876543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-12 Score=111.03 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=95.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.....+++.+.++++++|||||||+|+.+..+++- ..+|+.+|..++..+.|++++...|+. +|.+.++ |...--+
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~g-DG~~G~~- 134 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHG-DGSKGWP- 134 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEEC-CcccCCC-
Confidence 44568899999999999999999999999999985 559999999999999999999999986 5999999 8765431
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...+||+|+.......+|. .+.+.|||||++++-+.
T Consensus 135 -----~~aPyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 -----EEAPYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -----CCCCcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 3478999999988888753 35778999999887665
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=120.08 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=89.8
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+++.+ +++.+|||+|||+|..+..+++.. +.+|+++|+|++|++.+++++.......++.++.+ |+.+..+
T Consensus 54 ~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g-D~~~~~~- 129 (301)
T TIGR03438 54 ADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICA-DFTQPLA- 129 (301)
T ss_pred HHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE-cccchhh-
Confidence 34455554 367899999999999999998873 68999999999999999998775432235777899 9876320
Q ss_pred CccccCCC----cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 251 NMTELFLG----NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 251 ~l~~~~~~----~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+... ...++++..++.++++++...++++++++|+|||.+++.+.
T Consensus 130 ----~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 130 ----LPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ----hhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 1111 22344445678888877888999999999999999887653
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=106.67 Aligned_cols=110 Identities=21% Similarity=0.273 Sum_probs=95.3
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..+.+|.+.|+++++|||||+|+.++.++.. +.++|+++|-+++.++..++++...|+ ++++++.+ ++.+.-+
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g-~Ap~~L~---- 98 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEG-DAPEALP---- 98 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEec-cchHhhc----
Confidence 5688999999999999999999999999954 678999999999999999999999995 59999999 8865531
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...++|.|+..+. . +.+..++.+...|||||++++..
T Consensus 99 --~~~~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 99 --DLPSPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred --CCCCCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEe
Confidence 1237999999876 3 45899999999999999998865
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=106.98 Aligned_cols=163 Identities=19% Similarity=0.177 Sum_probs=118.1
Q ss_pred CCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc--cccCCCccc
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM--TELFLGNFS 261 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l--~~~~~~~fD 261 (381)
+.+|||||||+|..+.+++++ +.....-.|+++..+...+..+...+++.-..-... |+...+-.-. ..+..++||
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~l-Dv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLAL-DVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEe-ecCCCCCccccccccCCCCcc
Confidence 335999999999999999998 778999999999988888888887777522233444 6554420000 001246899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC-ch-hhh--hhhccCCCCCCCHHHHHHHHHhcC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL-GP-GFI--KEYIFPSGCLPSLRRVTSAMTSSS 337 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~-~~-~~i--~~yi~pgg~lp~~~~~~~~l~~~~ 337 (381)
.|+|.+|+|-++......+|+.+.++|+|||.+++-.|-.....+.. .. .|- .+--.|...+..++++ ..+.+++
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v-~~lA~~~ 183 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDV-EALAAAH 183 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHH-HHHHHHC
Confidence 99999999999988899999999999999999988776544333322 11 121 1223577778889887 5666679
Q ss_pred CcEEEEEEecch
Q 047022 338 RLCVEHLENIET 349 (381)
Q Consensus 338 Gf~v~~~~~~~~ 349 (381)
||++++..++..
T Consensus 184 GL~l~~~~~MPA 195 (204)
T PF06080_consen 184 GLELEEDIDMPA 195 (204)
T ss_pred CCccCcccccCC
Confidence 999988777654
|
The function of this family is unknown. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-12 Score=122.23 Aligned_cols=123 Identities=13% Similarity=0.131 Sum_probs=97.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+++.+....+..+||||||+|.++..+|+. ++..++|+|+++.+++.+.+++...++. ++.++.+ |+..+..
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~-DA~~ll~---- 186 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINY-DARLLLE---- 186 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEC-CHHHhhh----
Confidence 4566666566779999999999999999987 6789999999999999999999998885 7999999 9876531
Q ss_pred ccCCCcccEEEEchhhHhhChh----cHHHHHHHHHhccccCceEEEEcCCCCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHD----YMEELFSCCESLLAENGLSCSTVPDQCY 303 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~----~~~~~l~~~~~~LkpgG~~~i~~~~~~~ 303 (381)
.++++++|.|++.....+.... -...+++++.++|+|||.+.+.+....|
T Consensus 187 ~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y 240 (390)
T PRK14121 187 LLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELY 240 (390)
T ss_pred hCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHH
Confidence 1456899999987543322111 1268999999999999998887766544
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-11 Score=110.35 Aligned_cols=117 Identities=19% Similarity=0.278 Sum_probs=89.2
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.+..+++.+. ..+.+|||+|||+|.++..+++. ++.+++|+|+++.+++.+++++...++. ++++..+ |+.+..
T Consensus 76 l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~-d~~~~~-- 150 (251)
T TIGR03534 76 LVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQS-DWFEPL-- 150 (251)
T ss_pred HHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEEC-chhccC--
Confidence 3344555543 34569999999999999999987 5679999999999999999999888875 7999999 986632
Q ss_pred CccccCCCcccEEEEchh------hHhhCh------------------hcHHHHHHHHHhccccCceEEEEc
Q 047022 251 NMTELFLGNFSTVFICGM------IEAVGH------------------DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~------l~~~~~------------------~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..++||+|+++-. ++++.. ..+..+++.+.++|+|||.+++..
T Consensus 151 -----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 151 -----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred -----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4578999998421 111110 123478899999999999988764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=115.50 Aligned_cols=109 Identities=13% Similarity=0.202 Sum_probs=87.4
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
+..+|||+|||+|.+++.++.. ++.+|+++|+|+.+++.|++++...++.+++++..+ |+.+.. ...+||+
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~-d~~~~~-------~~~~fDl 185 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS-NLFEPL-------AGQKIDI 185 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-chhccC-------cCCCccE
Confidence 3369999999999999999987 467999999999999999999998888767999999 886532 2348999
Q ss_pred EEEch-------------hhHhhCh----------hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICG-------------MIEAVGH----------DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~-------------~l~~~~~----------~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+++- +..|-|. ..+..+++.+.+.|+|||.+++.+..
T Consensus 186 IvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 186 IVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred EEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 99961 2222211 24668899999999999999887753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=115.74 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=85.6
Q ss_pred CEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
.+|||+|||+|.+++.+++. ++.+|+++|+|+.+++.|++++...++.+++++..+ |+.+.. +.++||+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~-D~~~~l-------~~~~fDlIv 206 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIES-DLFAAL-------PGRRYDLIV 206 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC-chhhhC-------CCCCccEEE
Confidence 68999999999999999987 568999999999999999999999888778999999 975432 235899999
Q ss_pred Ech------hh-------HhhCh----------hcHHHHHHHHHhccccCceEEEEcC
Q 047022 265 ICG------MI-------EAVGH----------DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 265 s~~------~l-------~~~~~----------~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
++- .+ .|-|. +.+..+++.+.+.|+|||.+++.+.
T Consensus 207 sNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 207 SNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 962 11 11111 2246788999999999999988764
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=111.64 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
-..+..+++.+.++||++|||||||+|+.+..++.-.+ ..|+++|+.+...+.|++++...+.. ++.+..+ |....
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~g-dg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVG-DGSEG 135 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES--GGGT
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEc-chhhc
Confidence 35566889999999999999999999999999987633 47999999999999999999998875 8999999 87654
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+ ...+||+|++......+| . .+.+.|++||++++-...
T Consensus 136 ~~------~~apfD~I~v~~a~~~ip----~----~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 136 WP------EEAPFDRIIVTAAVPEIP----E----ALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp TG------GG-SEEEEEESSBBSS------H----HHHHTEEEEEEEEEEESS
T ss_pred cc------cCCCcCEEEEeeccchHH----H----HHHHhcCCCcEEEEEEcc
Confidence 32 347899999998776653 2 256779999998876553
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-11 Score=107.91 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=99.6
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..|+..+++.||++|||.|.|+|.++.+++.. +..+|+.+|+.++..+.|+++++..++.+++++..+ |..+..
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~-Dv~~~~--- 159 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLG-DVREGI--- 159 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEec-cccccc---
Confidence 47889999999999999999999999999976 447999999999999999999999999988999999 998875
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
....||+|+.- + .++-.+++.+.++|||||.+++-.|+
T Consensus 160 ----~~~~vDav~LD-----m--p~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 160 ----DEEDVDAVFLD-----L--PDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred ----cccccCEEEEc-----C--CChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 33589999987 6 45899999999999999998876654
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=114.56 Aligned_cols=112 Identities=22% Similarity=0.269 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..+..+++.+.++++++|||||||+|.++..+++..+ ..|+++|+++++++.|++++...++ +++.+..+ |..+..
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~g-D~~~~~ 144 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCG-DGYYGV 144 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeC-Chhhcc
Confidence 3445677888888999999999999999999998743 4799999999999999999988887 47999999 887654
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+ ..++||+|++...+++++ ..+.+.|+|||++++..
T Consensus 145 ~------~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 P------EFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred c------ccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 1 236799999986665552 23567899999977754
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=109.98 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=82.2
Q ss_pred HHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 172 KVSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 172 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
++..+.++.. ++++.+|||||||+|.++..+++.. +.+|+++|+++ | ... .+++++++ |+.+.+
T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~-D~~~~~ 104 (209)
T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQG-DFRDEL 104 (209)
T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEec-CCCChH
Confidence 4455566666 5789999999999999999999873 36999999998 1 122 25899999 988742
Q ss_pred c-CCc-cccCCCcccEEEEchhhHhhChh--c-------HHHHHHHHHhccccCceEEEEcC
Q 047022 249 P-TNM-TELFLGNFSTVFICGMIEAVGHD--Y-------MEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 249 ~-~~l-~~~~~~~fD~Ivs~~~l~~~~~~--~-------~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
. ..+ ..+..++||+|+|..+..+.+.. + ...+++.+.++|||||.+++.+.
T Consensus 105 ~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 105 VLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 0 000 01345789999997655443321 1 24689999999999999888653
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=110.41 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=86.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.+..+|||||||+|..++.++.. .+.+++++|+++++++.|+++++..|+.++++++.+ |+.+.-+.-......++|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~g-da~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQS-DALSALDQLLNNDPKPEF 145 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHHhCCCCCCC
Confidence 45679999999999988888775 357999999999999999999999999989999999 987642100000123689
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+|+.. ....++..+++.+.++|+|||.+++.
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999986 23345778999999999999997764
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-11 Score=110.45 Aligned_cols=129 Identities=17% Similarity=0.300 Sum_probs=97.8
Q ss_pred eecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 047022 154 SCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGL 232 (381)
Q Consensus 154 s~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl 232 (381)
.++.|+...-+. --+.+++.+....+.+|||+|||+|.+++.+++. +..+++.+|+|...++.+++++..+++
T Consensus 134 ~pGVFS~~~lD~------GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~ 207 (300)
T COG2813 134 LPGVFSRDKLDK------GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV 207 (300)
T ss_pred CCCCCcCCCcCh------HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC
Confidence 356665543322 2236788888777779999999999999999998 578999999999999999999999888
Q ss_pred CCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcH----HHHHHHHHhccccCceEEEEcC
Q 047022 233 QDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYM----EELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 233 ~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~----~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.. ..+... |..+-. . ++||+|+|+--|+ -+..-. .++++...+.|++||.+.|...
T Consensus 208 ~~-~~v~~s-~~~~~v-------~-~kfd~IisNPPfh-~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 208 EN-TEVWAS-NLYEPV-------E-GKFDLIISNPPFH-AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred Cc-cEEEEe-cccccc-------c-ccccEEEeCCCcc-CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 63 355555 443322 1 5999999987665 232223 3899999999999999877764
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-11 Score=106.69 Aligned_cols=115 Identities=17% Similarity=0.075 Sum_probs=92.0
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-----------cCCCCCeEEEEecCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-----------AGLQDTSDYIFVITVN 245 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-----------~gl~~~i~~~~~~d~~ 245 (381)
...+.+.++.+||..|||.|..+.+++++ |.+|+|+|+|+..++.+.+.... .--..+|++.++ |+.
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g-D~f 113 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVA-DIF 113 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEc-cCc
Confidence 34455556789999999999999999996 99999999999999987653200 001247999999 999
Q ss_pred ccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
++++.. -..++||.|+-..++.+++++....+.+.+.++|+|||.+++
T Consensus 114 ~l~~~~---~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 114 NLPKIA---NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred CCCccc---cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 986210 123689999999999999998899999999999999999443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.3e-11 Score=118.07 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=92.5
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+..+.+.+|.+|||+|||+|..+.++++.. +.+|+++|+|+.+++.+++++...|+. ++++..+ |..++.
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~-Da~~~~---- 314 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEG-DARSFS---- 314 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeC-cccccc----
Confidence 34456677889999999999999999988752 469999999999999999999998885 7999999 988765
Q ss_pred cccCCCcccEEEEc------hhh---------------HhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 253 TELFLGNFSTVFIC------GMI---------------EAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~------~~l---------------~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
..++||+|++. +++ +++. .....++..+.++|||||++++++..-
T Consensus 315 ---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~-~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 315 ---PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELV-GLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred ---cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 34689999952 122 1111 123468999999999999988887653
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=108.31 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=87.0
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.++..+...++.+|||+|||+|.++..++.. +..+++++|+|+.+++.+++++. .....++++..+ |+.+..
T Consensus 99 ~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~-d~~~~~----- 171 (275)
T PRK09328 99 WALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQG-DWFEPL----- 171 (275)
T ss_pred HHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEc-cccCcC-----
Confidence 3344445567789999999999999999987 46899999999999999999987 344457999999 885432
Q ss_pred ccCCCcccEEEEchh------hHhhC------------------hhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 ELFLGNFSTVFICGM------IEAVG------------------HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~------l~~~~------------------~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..++||+|+++-- +..+. .+.+..+++++.++|+|||.+++..
T Consensus 172 --~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 172 --PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred --CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3478999998521 11010 1234678889999999999988854
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=105.80 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=80.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||+|||+|.++..++++ .+.+|+++|+|+.+++.++++. .+++++.+ |+.+.. ..++||
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~-D~~e~~-------~~~kFD 128 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITS-DVFEFE-------SNEKFD 128 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEEC-chhhhc-------ccCCCc
Confidence 34579999999999999988876 3579999999999999998763 26889999 998765 346899
Q ss_pred EEEEchhhHhhChhc------------------HHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICGMIEAVGHDY------------------MEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~------------------~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|+++-.+.|.+..+ ...+++....+|+|+|.+.+..
T Consensus 129 lIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 129 VVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred EEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 999988777654321 2467788889999999866553
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.4e-11 Score=107.77 Aligned_cols=119 Identities=22% Similarity=0.240 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-c------C----CCCCeEEEEe
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-A------G----LQDTSDYIFV 241 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-~------g----l~~~i~~~~~ 241 (381)
+..+++.+..+++.+||..|||.|.-+..++++ |.+|+|+|+|+..++.+.+.... . + -.++|++.++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 344555667788889999999999999999996 99999999999999888443221 0 0 1246899999
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce-EEEEc
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL-SCSTV 298 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~-~~i~~ 298 (381)
|+.+++++ ..++||+|+-...+..++++....+.+.+.++|+|||. ++++.
T Consensus 105 -DfF~l~~~-----~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 105 -DFFELPPE-----DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp --TTTGGGS-----CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred -ccccCChh-----hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 99998732 23689999999999999999999999999999999999 44444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-11 Score=101.90 Aligned_cols=80 Identities=14% Similarity=-0.040 Sum_probs=67.5
Q ss_pred EEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhcc
Q 047022 211 TGITLSELQLKYAEIKVKEAG--LQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLL 288 (381)
Q Consensus 211 ~gvDis~~~~~~a~~~~~~~g--l~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~L 288 (381)
+|+|+|++|++.|+++..... ...++++.++ |+.+++ +.+++||+|++..+++++ .+...++++++++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~-d~~~lp------~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEG-DAIDLP------FDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEe-chhhCC------CCCCCeeEEEecchhhcC--CCHHHHHHHHHHHc
Confidence 489999999999988765322 2347999999 999988 567899999999999999 46899999999999
Q ss_pred ccCceEEEEcC
Q 047022 289 AENGLSCSTVP 299 (381)
Q Consensus 289 kpgG~~~i~~~ 299 (381)
||||.+++...
T Consensus 72 kpGG~l~i~d~ 82 (160)
T PLN02232 72 KPGSRVSILDF 82 (160)
T ss_pred CcCeEEEEEEC
Confidence 99999876543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.4e-11 Score=117.08 Aligned_cols=124 Identities=13% Similarity=0.067 Sum_probs=93.3
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..++..+.+.+|.+|||+|||+|+.+.++++.. +++|+++|+++.+++.++++++..|+..++.+..+ |....+.
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~-d~~~~~~--- 303 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDG-DGRGPSQ--- 303 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecc-ccccccc---
Confidence 356667788899999999999999999999863 47999999999999999999999887633444666 6554331
Q ss_pred cccCCCcccEEEEc------hhhHhhChh--------------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 253 TELFLGNFSTVFIC------GMIEAVGHD--------------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~------~~l~~~~~~--------------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
....++||.|++. +++.+.++- ....+++++.++|||||.+++++..-.
T Consensus 304 -~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 304 -WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred -cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 0134689999852 344443320 135789999999999999888876543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=108.09 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=90.6
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
...+.++++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...++. ++++... |...++
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~-D~~~~~------ 135 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNF-DGRVFG------ 135 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecC-CHHHhh------
Confidence 345677899999999999999999998863 358999999999999999999998885 6999999 987765
Q ss_pred cCCCcccEEEEch------hhHhhC-------h-------hcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 255 LFLGNFSTVFICG------MIEAVG-------H-------DYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 255 ~~~~~fD~Ivs~~------~l~~~~-------~-------~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
...++||+|++.. ++.+-+ + .....+++.+.++|||||+++.++..-
T Consensus 136 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 136 AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1335699998621 111110 0 123468999999999999988877553
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=105.10 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..+..|+..+++.||++|||.|.|+|.++..+++. +..+|+..|+.++..+.|+++++..|+.+++++... |+.+..
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~-Dv~~~g 105 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHR-DVCEEG 105 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES--GGCG-
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEec-ceeccc
Confidence 44568899999999999999999999999999987 557999999999999999999999999999999999 986432
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhcc-ccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLL-AENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~L-kpgG~~~i~~~~ 300 (381)
.. ...+..+|.|+.- +| ++-.++..+.++| ||||++++-.|+
T Consensus 106 ~~---~~~~~~~DavfLD-----lp--~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 106 FD---EELESDFDAVFLD-----LP--DPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp -S---TT-TTSEEEEEEE-----SS--SGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred cc---ccccCcccEEEEe-----CC--CHHHHHHHHHHHHhcCCceEEEECCC
Confidence 00 0123689999987 64 4678889999999 999998776543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-10 Score=108.85 Aligned_cols=108 Identities=14% Similarity=0.139 Sum_probs=81.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||+|||+|.+++.+++. ++++|+++|+|+.+++.|++++...+. ++++..+ |+.+... ...++||
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~g-Dl~e~~l-----~~~~~FD 321 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHG-SWFDTDM-----PSEGKWD 321 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEc-chhcccc-----ccCCCcc
Confidence 35679999999999999999876 678999999999999999999987764 7999999 9865420 0235799
Q ss_pred EEEEchhh-----Hhh--------------C----hhcHHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICGMI-----EAV--------------G----HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l-----~~~--------------~----~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|+|+--. .+. + .+.+..+++.+.+.|+|||.+++..
T Consensus 322 LIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 322 IIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred EEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99995411 000 0 0124467777888999999987765
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=116.01 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=94.2
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...+.+.+|.+|||+|||+|+.+.++++.. +.+|+++|+|+.+++.+++++...|+. ++++... |...++
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~-Da~~l~---- 301 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIA-DAERLT---- 301 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEEC-chhhhh----
Confidence 34455678899999999999999999998863 579999999999999999999999885 6899999 987764
Q ss_pred cccCCCcccEEEEc------hhhHh-------hChh-------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 253 TELFLGNFSTVFIC------GMIEA-------VGHD-------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~------~~l~~-------~~~~-------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
.+..++||.|++. +++.. .+.+ ...+++.++.+.|||||.++.++..-.
T Consensus 302 -~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 302 -EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred -hhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1234689999962 22211 1111 235678999999999999888876643
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=104.76 Aligned_cols=121 Identities=23% Similarity=0.227 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 168 GQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 168 aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
.+-+.+..+++.. ...+||||||+.|.-++.+++. .+++|+.+|++++..+.|++.+...|+.++|+++.+ |+.
T Consensus 32 ~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g-da~ 107 (205)
T PF01596_consen 32 ETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG-DAL 107 (205)
T ss_dssp HHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES--HH
T ss_pred HHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe-ccH
Confidence 3444555555554 3459999999999999999987 368999999999999999999999999999999999 987
Q ss_pred ccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.-+.-......++||+|+.-. ...++..+++.+.++|+|||.+++.
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHhccCCCceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEc
Confidence 6321000001236899999973 4467899999999999999998875
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=114.18 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=91.3
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+...+.+.++.+|||+|||+|..+.++++.. +.+|+++|+|+.+++.+++++...|+. +++..+ |..+++.
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~-D~~~~~~---- 307 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVG-DARDPAQ---- 307 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEc-Ccccchh----
Confidence 45566778899999999999999999999873 369999999999999999999988874 788999 9876541
Q ss_pred ccCCCcccEEEEch------hhHhhC-------h-------hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 254 ELFLGNFSTVFICG------MIEAVG-------H-------DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~------~l~~~~-------~-------~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+..++||.|++.. ++.+-+ . .....+++.+.++|||||++++++..
T Consensus 308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 01246799999532 111100 0 11347899999999999998887753
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=114.53 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=94.7
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+...+.+++|.+|||+|||+|+.+.++++.. .++|+++|+++.+++.+++++...|+. ++++..+ |..+++...
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~-D~~~~~~~~ 319 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAA-DSRNLLELK 319 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeC-Chhhccccc
Confidence 345566778899999999999999999999863 368999999999999999999999986 6999999 987764100
Q ss_pred ccccCCCcccEEEEc------hhhHhhCh-------h-------cHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 MTELFLGNFSTVFIC------GMIEAVGH-------D-------YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~------~~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
....++||.|++. +++.+-++ . ....+++++.++|||||+++.++..
T Consensus 320 --~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 320 --PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred --ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 0124689999963 34433221 0 1357899999999999998877654
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=114.43 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=92.3
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++...|+. ++++..+ |+.++...
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~-D~~~~~~~-- 316 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKAL-DARKVHEK-- 316 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeC-Ccccccch--
Confidence 44556677889999999999999999999863 579999999999999999999999886 5999999 98776411
Q ss_pred cccCCCcccEEEEch------hhHhhCh-------h-------cHHHHHHHHHhccccCceEEEEcCC
Q 047022 253 TELFLGNFSTVFICG------MIEAVGH-------D-------YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~------~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+ .++||+|++.. ++.+-++ . ....+++.+.++|||||.++.++..
T Consensus 317 --~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 317 --F-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred --h-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 1 26899999742 1111110 0 1246899999999999998877654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=90.05 Aligned_cols=103 Identities=22% Similarity=0.358 Sum_probs=84.0
Q ss_pred EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEc
Q 047022 187 EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFIC 266 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~ 266 (381)
+|+|+|||.|.++..+++..+.+++++|+++.++..+++.... ....++++... |..+... ...++||+|++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~-----~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA-LLADNVEVLKG-DAEELPP-----EADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-ccccceEEEEc-Chhhhcc-----ccCCceEEEEEc
Confidence 5899999999999999875577999999999999988864333 23357899998 8887651 134789999999
Q ss_pred hhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 267 GMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 267 ~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.++++. ......+++.+.+.|+|||.++++
T Consensus 74 ~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 74 PPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 998873 256899999999999999998775
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=108.50 Aligned_cols=111 Identities=16% Similarity=0.189 Sum_probs=85.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||||||.|.++..+++. ++.+++++|+++++++.|++.+...+..++++++.+ |+.+.-. ...++||
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~-Da~~~l~-----~~~~~yD 138 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEA-DGAEYIA-----VHRHSTD 138 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC-CHHHHHH-----hCCCCCC
Confidence 35679999999999999999877 678999999999999999998765444468999999 9876421 1236899
Q ss_pred EEEEchhh-HhhCh-hcHHHHHHHHHhccccCceEEEEcC
Q 047022 262 TVFICGMI-EAVGH-DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 262 ~Ivs~~~l-~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+|++...- ...+. -....+++.+.++|+|||++++...
T Consensus 139 ~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 139 VILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred EEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 99975310 11111 1237999999999999999888653
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=115.45 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=84.9
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||+|||+|.+++.++.. ++.+|+++|+|+.+++.|++++...++.+++++..+ |+.+.. ..++||+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~-D~~~~~-------~~~~fDl 209 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHS-NWFENI-------EKQKFDF 209 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeec-chhhhC-------cCCCccE
Confidence 3568999999999999999876 578999999999999999999998888778999999 875422 3368999
Q ss_pred EEEch--------------hhHhhC----------hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 263 VFICG--------------MIEAVG----------HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 263 Ivs~~--------------~l~~~~----------~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
|+|+- +..|-| -+.+..+++.+.++|+|||.+++.+.
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 99942 111111 01245678889999999999887653
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=102.54 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcCCCC--CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 168 GQIRKVSVLIEKVKLVK--GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 168 aq~~~~~~l~~~l~~~~--~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
.|.....+.++.+.++. ..-|||||||+|-.+..+.. .|...+|+|+|+.|++.|.++--+ -.+..+ |.-
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~-~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~-DMG 103 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD-SGHQWIGVDISPSMLEQAVERELE------GDLILC-DMG 103 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc-CCceEEeecCCHHHHHHHHHhhhh------cCeeee-ecC
Confidence 35566667788887776 66899999999998888877 588999999999999999974322 245667 664
Q ss_pred c-cCcCCccccCCCcccEEEEchhhHhhCh---------hcHHHHHHHHHhccccCceEEEEc
Q 047022 246 C-LKPTNMTELFLGNFSTVFICGMIEAVGH---------DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 246 ~-l~~~~l~~~~~~~fD~Ivs~~~l~~~~~---------~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+ +| |.+++||.+||+..++++.. ..+..||..++.+|++|++.++..
T Consensus 104 ~Glp------frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 104 EGLP------FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred CCCC------CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 3 34 77899999999887765543 235578999999999999977765
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=102.57 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=98.5
Q ss_pred HHHHHHHcCCC------CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 173 VSVLIEKVKLV------KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 173 ~~~l~~~l~~~------~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
-..++.++... ...++||+|||.|..+..+....-.+|..+|+++..++.|++.+.... ....++... ...+
T Consensus 38 S~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~-gLQ~ 115 (218)
T PF05891_consen 38 SRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCV-GLQD 115 (218)
T ss_dssp HHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES--GGG
T ss_pred HHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEec-CHhh
Confidence 34556655433 346899999999999988766555699999999999999998764411 122466666 6777
Q ss_pred cCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC--CCCCCCCCchhhhhhhccCCCCCC
Q 047022 247 LKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD--QCYDEHSLGPGFIKEYIFPSGCLP 324 (381)
Q Consensus 247 l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~--~~~~~~~~~~~~i~~yi~pgg~lp 324 (381)
..| ..++||+|++.+++.|+.++++..+|++|...|+|||.+++--.. .....+... .++...
T Consensus 116 f~P------~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~---------DsSvTR 180 (218)
T PF05891_consen 116 FTP------EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEE---------DSSVTR 180 (218)
T ss_dssp ----------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETT---------TTEEEE
T ss_pred ccC------CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCc---------cCeeec
Confidence 663 247999999999999999999999999999999999998874321 111111110 111223
Q ss_pred CHHHHHHHHHhcCCcEEEEEE
Q 047022 325 SLRRVTSAMTSSSRLCVEHLE 345 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~ 345 (381)
+...+ ..+.+++||.++..+
T Consensus 181 s~~~~-~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 181 SDEHF-RELFKQAGLRLVKEE 200 (218)
T ss_dssp EHHHH-HHHHHHCT-EEEEEE
T ss_pred CHHHH-HHHHHHcCCEEEEec
Confidence 34444 555566999998654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=103.28 Aligned_cols=109 Identities=24% Similarity=0.289 Sum_probs=91.4
Q ss_pred HcCCCCCCEEEEecCCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-ecCccccCcCCcccc
Q 047022 179 KVKLVKGQEVLEIGCGWGTLAIEIVRQ-T-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIF-VITVNCLKPTNMTEL 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~G~~~~~la~~-~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~-~~d~~~l~~~~l~~~ 255 (381)
.+...+..+|||||.+.|.-++.+|.. + +.+++++|+++++.+.|++++++.|+.++|+... + |..+.-. ..
T Consensus 54 L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g-dal~~l~----~~ 128 (219)
T COG4122 54 LARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG-DALDVLS----RL 128 (219)
T ss_pred HHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC-cHHHHHH----hc
Confidence 334446789999999999999999987 3 5799999999999999999999999998898888 7 7655431 12
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..++||+|+.- ..+.+++.+++.+.++|+|||.+++.
T Consensus 129 ~~~~fDliFID-----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 129 LDGSFDLVFID-----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cCCCccEEEEe-----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 45899999997 45567899999999999999998764
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.8e-11 Score=113.43 Aligned_cols=114 Identities=21% Similarity=0.231 Sum_probs=79.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC---------CCCCeEEEEecCccccCcCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG---------LQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~g---------l~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
++.+|||+|||-|+-+.-+....-..++|+|++.+.++.|+++..... ..-...+..+ |....... ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~-D~f~~~l~--~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAA-DCFSESLR--EK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEES-TTCCSHHH--CT
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecc-ccccchhh--hh
Confidence 788999999999998887777544689999999999999999983211 1123566777 65432100 01
Q ss_pred cC--CCcccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 255 LF--LGNFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 255 ~~--~~~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+. ..+||+|-|..++|+.-. +....+++.+.+.|+|||+++.|+|+
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 22 259999999999998842 34667999999999999999998876
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=106.11 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=88.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.+..+||||||++|..++.+++. .+.+++++|.+++..+.|+++++..|+.++|+++.+ |+.+.-+.-......++|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G-dA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG-LAAESLKSMIQNGEGSSY 195 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHhcccCCCC
Confidence 35679999999999999999985 356899999999999999999999999999999999 986642110000113689
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+|+.- ....++..+++.+.++|+|||.+++.
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999997 33457899999999999999998774
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-10 Score=97.92 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=82.2
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+.+++.+.+.++.+|||||||+|.++..++++ +.+++++|+++.+++.+++++.. .+++++..+ |+.+++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~-D~~~~~----- 72 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHG-DALKFD----- 72 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEEC-chhcCC-----
Confidence 46788888888999999999999999999997 78999999999999999988753 247999999 998886
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhc--cccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESL--LAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~--LkpgG~~~i~ 297 (381)
+...+||.|+++--+ |+. ...+..+.+. +.++|.+++.
T Consensus 73 -~~~~~~d~vi~n~Py-~~~----~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 73 -LPKLQPYKVVGNLPY-NIS----TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred -ccccCCCEEEECCCc-ccH----HHHHHHHHhcCCCcceEEEEEE
Confidence 334569999987433 232 3334444332 3466666654
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=102.83 Aligned_cols=101 Identities=16% Similarity=0.054 Sum_probs=73.7
Q ss_pred EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEc
Q 047022 187 EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFIC 266 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~ 266 (381)
.++|+|||+|..++-++.+ --+|+++|+|+.|++.|++.....-.....++... +..++. -.+++.|+|+|.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~-~~v~L~------g~e~SVDlI~~A 107 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSD-EMVDLL------GGEESVDLITAA 107 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccc-cccccc------CCCcceeeehhh
Confidence 8999999999777777775 55999999999999999886432211111222222 222222 136899999999
Q ss_pred hhhHhhChhcHHHHHHHHHhccccCc-eEEEEc
Q 047022 267 GMIEAVGHDYMEELFSCCESLLAENG-LSCSTV 298 (381)
Q Consensus 267 ~~l~~~~~~~~~~~l~~~~~~LkpgG-~~~i~~ 298 (381)
.++|++ +.+.+++++.++||+.| .+.+-.
T Consensus 108 qa~HWF---dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 108 QAVHWF---DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hhHHhh---chHHHHHHHHHHcCCCCCEEEEEE
Confidence 999998 57999999999999877 554433
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-10 Score=106.88 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=84.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcC--C--CCCeEEEEecCccccCcCCccccCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAG--L--QDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~g--l--~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
+...+||+||||+|..+..++++++ .+|+++|+++++++.|++.+...+ . .++++++.+ |....-. ...
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~-Da~~~l~-----~~~ 148 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIG-DGIKFVA-----ETE 148 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEEC-chHHHHh-----hCC
Confidence 4567999999999999999988744 589999999999999999886432 2 358999999 9876531 134
Q ss_pred CcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEEEcC
Q 047022 258 GNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
++||+|++...-.+.+.. ...++++.+.+.|+|||++++...
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 789999986432211111 237889999999999999887543
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.8e-10 Score=102.47 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=88.8
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+.......+..+|||||+|.|.++..++++ ++.+++.+|+ |+.++.+++ .++|++..+ |+.+ +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~g-d~f~-~---- 155 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPG-DFFD-P---- 155 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES--TTT-C----
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccc-cHHh-h----
Confidence 45566677777889999999999999999988 8899999999 778888877 369999999 9973 2
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC--ceEEEEc
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN--GLSCSTV 298 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg--G~~~i~~ 298 (381)
++ . +|+|+...++|++++++...+++++++.|+|| |+++|..
T Consensus 156 --~P-~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 156 --LP-V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp --CS-S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred --hc-c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 22 3 99999999999999999999999999999999 9977653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=102.84 Aligned_cols=153 Identities=12% Similarity=0.130 Sum_probs=105.6
Q ss_pred EEEEecCCchHHHHHHHHh-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQ-TG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~-~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+|||||||-|.....+.+. ++ ..+.++|.|+..++..+++..... .++...+. |+.... .......+++|.|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~-Dlt~~~--~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVW-DLTSPS--LKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccce-eccchh--ccCCCCcCccceE
Confidence 8999999999999888876 33 789999999999999988765432 45666666 654322 0112466999999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC-CCCCC-Cchhh--hhhhccCCCC---CCCHHHHHHHHHhc
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC-YDEHS-LGPGF--IKEYIFPSGC---LPSLRRVTSAMTSS 336 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~-~~~~~-~~~~~--i~~yi~pgg~---lp~~~~~~~~l~~~ 336 (381)
+++.++..++++....+++++.++|||||.+++...... ....+ ....- -+-|+...|. .-+.+++ ..+..+
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL-~~~f~~ 227 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEEL-DELFTK 227 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHH-HHHHHh
Confidence 999999999999999999999999999999888643211 00000 00111 1234444444 2344444 566667
Q ss_pred CCcEEEEEE
Q 047022 337 SRLCVEHLE 345 (381)
Q Consensus 337 ~Gf~v~~~~ 345 (381)
+||..+..+
T Consensus 228 agf~~~~~~ 236 (264)
T KOG2361|consen 228 AGFEEVQLE 236 (264)
T ss_pred cccchhccc
Confidence 999876543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=107.50 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=85.5
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||+|||+|.+++.++.....+|+++|+|+.+++.|++++..+++. ++++++.+ |+.+.... + ....++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~-D~~~~l~~-~-~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRD-DVFKLLRT-Y-RDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEc-cHHHHHHH-H-HhcCCCCCE
Confidence 67899999999999998877643348999999999999999999999986 47999999 98764210 0 002358999
Q ss_pred EEEchhhHhhC-------hhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICGMIEAVG-------HDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|++.--...-. ...+..+++.+.++|+|||.++.+...
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99862210000 024667778899999999998876543
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=109.19 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...++.+++.+.+.++.+|||+|||+|.+++.+++. +.+|+|+|+|+++++.|++++...++. ++++..+ |+.+...
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~-d~~~~l~ 359 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHA-NLEEDFT 359 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEe-ChHHhhh
Confidence 345567777777788899999999999999999986 689999999999999999999888875 7999999 9865321
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
. + .+..++||+|++. -|.......++.+.+ ++|++.++++..
T Consensus 360 ~-~-~~~~~~fD~Vi~d-----PPr~g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 360 D-Q-PWALGGFDKVLLD-----PPRAGAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred h-h-hhhcCCCCEEEEC-----cCCcChHHHHHHHHh-cCCCeEEEEEeC
Confidence 0 0 0224679999986 332233455665655 689999888863
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=100.02 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=79.7
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||+|||+|.+++.+++. .+.+|+++|+|+.+++.|++++..++ +++..+ |+.+..+. ...++||+
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~-D~~~~l~~----~~~~~fDl 156 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEG-DLYDALPT----ALRGRVDI 156 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEe-echhhcch----hcCCCEeE
Confidence 3468999999999999999876 56799999999999999999987754 478888 87653211 11357999
Q ss_pred EEEchh------hHhhCh------------------hcHHHHHHHHHhccccCceEEEEcC
Q 047022 263 VFICGM------IEAVGH------------------DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 263 Ivs~~~------l~~~~~------------------~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
|+++-- +..+++ +-+..+++.+.++|+|||++++...
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 998631 111111 1145778888899999999888764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=102.67 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=80.7
Q ss_pred EEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+|||+|||+|.+++.++.+ +.++|+++|+|+..++.|++++..+++ .++.+..+ |+.+-- .++||+|||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~-dlf~~~--------~~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQS-DLFEPL--------RGKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEee-eccccc--------CCceeEEEe
Confidence 7999999999999999988 456999999999999999999999998 67788887 765432 258999999
Q ss_pred chh-----hHhhC------------------hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 266 CGM-----IEAVG------------------HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 266 ~~~-----l~~~~------------------~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+-- ..+.. -+-...++..+.+.|+|||.+++...
T Consensus 183 NPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 183 NPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 531 00000 01245778889999999999887653
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-09 Score=97.09 Aligned_cols=142 Identities=14% Similarity=0.057 Sum_probs=94.3
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
...++||||+|.|..+..++.. -.+|+++++|+.|....+++ | .+++..+|+.+ .+.+||+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g----~~vl~~~~w~~---------~~~~fDvI 155 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G----FTVLDIDDWQQ---------TDFKFDVI 155 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C----CeEEehhhhhc---------cCCceEEE
Confidence 3568999999999999999885 55899999999997766654 4 33333313332 23689999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEE--EcCCCCCCCCCC-chhhhhhhcc-CCCC-CCCHHHHHHHHHhcCC
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCS--TVPDQCYDEHSL-GPGFIKEYIF-PSGC-LPSLRRVTSAMTSSSR 338 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i--~~~~~~~~~~~~-~~~~i~~yi~-pgg~-lp~~~~~~~~l~~~~G 338 (381)
.|.+++... ..+..+++.+++.|+|+|++++ ..|-..|-+... ...--...+. +|.. --..+.++ .+.+.+|
T Consensus 156 scLNvLDRc--~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~G 232 (265)
T PF05219_consen 156 SCLNVLDRC--DRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAG 232 (265)
T ss_pred eehhhhhcc--CCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcC
Confidence 999999988 6789999999999999999554 455555443322 1111111111 1111 11133455 3445699
Q ss_pred cEEEEEEe
Q 047022 339 LCVEHLEN 346 (381)
Q Consensus 339 f~v~~~~~ 346 (381)
|+++....
T Consensus 233 F~v~~~tr 240 (265)
T PF05219_consen 233 FEVERWTR 240 (265)
T ss_pred CEEEEEec
Confidence 99987654
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=114.74 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=86.8
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.+|||+|||+|.+++.+++. |+ +|+++|+|+.+++.|++++..+++. ++++++.+ |..+... ...++||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~-D~~~~l~-----~~~~~fD 610 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQA-DCLAWLK-----EAREQFD 610 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEc-cHHHHHH-----HcCCCcC
Confidence 5789999999999999999985 55 6999999999999999999999986 58999999 9865420 0136899
Q ss_pred EEEEch-----------hhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 262 TVFICG-----------MIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 262 ~Ivs~~-----------~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+|++.- ..... .++..+++.+.++|+|||.++++..
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~--~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQ--RDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred EEEECCCCCCCCCccchhhhHH--HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999842 12222 3567889999999999999887654
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=96.74 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=73.9
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC-Cc-cccC
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT-NM-TELF 256 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~-~l-~~~~ 256 (381)
.+.++.+|||+|||+|.++..++++. ..+|+++|+|+.+ .. .++++... |..+.... .+ ..+.
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~-d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRG-DFTDEEVLNKIRERVG 95 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEe-eCCChhHHHHHHHHhC
Confidence 35689999999999999999988763 4589999999864 11 35788888 87653200 00 0123
Q ss_pred CCcccEEEEchh--------hHhhC-hhcHHHHHHHHHhccccCceEEEEc
Q 047022 257 LGNFSTVFICGM--------IEAVG-HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 257 ~~~fD~Ivs~~~--------l~~~~-~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.++||+|++... +.|.. .+....+++.+.++|+|||++++..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 468999998543 22221 1234688999999999999988864
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-10 Score=105.29 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=136.0
Q ss_pred CChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHH
Q 047022 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIE 201 (381)
Q Consensus 122 ~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~ 201 (381)
++..+..+.|++||+...+. .... .+.|.-++ |... .+.+...+-..-.++++.++++|||-|+-++.
T Consensus 67 ~~~~~~~~~Va~HYN~~~e~----g~e~-Rq~S~Ii~------lRnf-NNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlK 134 (389)
T KOG1975|consen 67 EANESKSSEVAEHYNERTEV----GREK-RQRSPIIF------LRNF-NNWIKSVLINLYTKRGDDVLDLGCGKGGDLLK 134 (389)
T ss_pred hhccchhHHHHHHHHHHHHH----hHhh-hccCceee------hhhh-hHHHHHHHHHHHhccccccceeccCCcccHhH
Confidence 34445577899999854443 1111 12222222 1111 22333333333357889999999999999988
Q ss_pred HHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----CeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhC--h
Q 047022 202 IVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD-----TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVG--H 274 (381)
Q Consensus 202 la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~-----~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~--~ 274 (381)
.-+..-..++|+||++..++.|+++...-.-.. .+.|+.+ |-.......+-++.+.+||+|-|..++|+.- .
T Consensus 135 w~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~-Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFete 213 (389)
T KOG1975|consen 135 WDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA-DCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETE 213 (389)
T ss_pred hhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe-ccchhHHHHhccCCCCCcceeeeeeeEeeeeccH
Confidence 877533589999999999999999875432111 3678888 6543210000012334599999999888653 2
Q ss_pred hcHHHHHHHHHhccccCceEEEEcCCCCC----------------------CCC----CCchhhhhhhccCC-C------
Q 047022 275 DYMEELFSCCESLLAENGLSCSTVPDQCY----------------------DEH----SLGPGFIKEYIFPS-G------ 321 (381)
Q Consensus 275 ~~~~~~l~~~~~~LkpgG~~~i~~~~~~~----------------------~~~----~~~~~~i~~yi~pg-g------ 321 (381)
+....+++++.++|+|||+++-|+|+... ... .....|-.+|.|.= +
T Consensus 214 e~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdcPE 293 (389)
T KOG1975|consen 214 ESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDCPE 293 (389)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcccccCCcc
Confidence 45678899999999999999999987321 000 00112223333310 0
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHH
Q 047022 322 CLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRW 358 (381)
Q Consensus 322 ~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W 358 (381)
++... ..+..++++.|++++.+..+-.-|..-+..|
T Consensus 294 ylV~F-~~l~~lae~y~LeLv~~k~F~df~~e~~~~~ 329 (389)
T KOG1975|consen 294 YLVPF-PTLVSLAEEYGLELVFVKPFADFYEEELKKN 329 (389)
T ss_pred eeeeh-HHHHHHHHhcCcEEEEeccHHHHHHHhcccc
Confidence 11112 3346677789999999988877777666666
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=103.23 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=82.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+.+.+.+...++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++++...++ +++++..+ |+.+...
T Consensus 163 ~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~-D~~~~~~---- 235 (315)
T PRK03522 163 ATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQAL-DSTQFAT---- 235 (315)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEc-CHHHHHH----
Confidence 33444444335689999999999999999985 78999999999999999999999888 48999999 9977541
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
...++||+|++. -|......-+.+....++|++.++++...
T Consensus 236 -~~~~~~D~Vv~d-----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 236 -AQGEVPDLVLVN-----PPRRGIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred -hcCCCCeEEEEC-----CCCCCccHHHHHHHHHcCCCeEEEEECCc
Confidence 123579999987 22222222222333446788777777543
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-09 Score=100.86 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=81.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHH--HH---HcCC-CCCeEEEEecCccccCcCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIK--VK---EAGL-QDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~--~~---~~gl-~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.....+||+||||.|..+..++++. ..+|+++|+++++++.|++. +. ...+ .++++++.+ |..+.-.
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~-Da~~fL~----- 221 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC-DAKEFLS----- 221 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEEC-cHHHHHH-----
Confidence 3445699999999999999888863 36999999999999999962 11 1122 358999999 9887431
Q ss_pred cCCCcccEEEEchhh---HhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 255 LFLGNFSTVFICGMI---EAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l---~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...++||+|++...- .....-.-.++++.+.+.|+|||++++..
T Consensus 222 ~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 222 SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 134689999987311 01111233679999999999999987764
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=99.13 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
+.+..+++.. +..+|||||++.|.-++.+++. .+++++++|.+++..+.|++.+...|+.++|+++.+ ++.+.-
T Consensus 69 ~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G-~a~e~L 144 (247)
T PLN02589 69 QFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPVL 144 (247)
T ss_pred HHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec-cHHHHH
Confidence 4444445444 4569999999999999999876 467999999999999999999999999999999999 886642
Q ss_pred cCCccc-cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 249 PTNMTE-LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 249 ~~~l~~-~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+..... ...++||+|+.-. ...++..+++.+.++|+|||.+++.
T Consensus 145 ~~l~~~~~~~~~fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHhccccCCcccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 110000 0126899999973 3456889999999999999997763
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-09 Score=99.23 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=82.9
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEecCccccCcCCccccCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAG--L-QDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~g--l-~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
.+.+.+||+||||+|..+..++++. ..+++++|+++++++.+++.+...+ + ..++++..+ |..+.-. ...
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~-D~~~~l~-----~~~ 143 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQID-DGFKFLA-----DTE 143 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEEC-chHHHHH-----hCC
Confidence 3445699999999999999988864 4689999999999999999875432 1 247888888 8765320 123
Q ss_pred CcccEEEEchhhHhhChhc--HHHHHHHHHhccccCceEEEEcCC
Q 047022 258 GNFSTVFICGMIEAVGHDY--MEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~--~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++||+|++......-+..+ ..++++.+.+.|+|||.+++....
T Consensus 144 ~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 144 NTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred CCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 7899999865422111112 468899999999999998876443
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=110.06 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=83.3
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHH--HHHc---CC-CCCeEEEEecCccccCcCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIK--VKEA---GL-QDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~--~~~~---gl-~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.++..+|||||||+|..+..++++++ .+++++|+++++++.++++ +... .+ .++++++.+ |.++.-.
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~-Da~~~l~----- 368 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND-DAFNWLR----- 368 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC-hHHHHHH-----
Confidence 35567999999999999999998754 6999999999999999983 2221 12 248999999 9887431
Q ss_pred cCCCcccEEEEchhhHhhC---hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 255 LFLGNFSTVFICGMIEAVG---HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~---~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...++||+|++...-...+ .-...++++.+.+.|||||.+++...
T Consensus 369 ~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 369 KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 1247899999974322211 01235789999999999999888653
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=97.27 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=94.7
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.++....+++|..|||--||||++++.+.. .|++++|+|++..|++-|+.++...++.+-.....+ |++.++
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~-Da~~lp------ 259 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVL-DATNLP------ 259 (347)
T ss_pred HHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEec-ccccCC------
Confidence 456667788999999999999999999887 599999999999999999999999887654455666 898888
Q ss_pred cCCCcccEEEEchh------hHhhC-hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 255 LFLGNFSTVFICGM------IEAVG-HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~------l~~~~-~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+...++|.|++--- ..-.. ++-+..+++.+.++||+||++++..|
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 56667999998321 11000 12377899999999999999998876
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-09 Score=101.59 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=83.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEecCccccCcCCccccCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEA--GL-QDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~--gl-~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
.+...+||+||||.|..+.+++++++ .+|+.+|+++.+++.|++.+... ++ .++++++.+ |....-.+ ...
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~-Da~~~l~~----~~~ 163 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIG-DGVEFLKN----APE 163 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEC-hHHHHHhh----ccC
Confidence 35668999999999999999998754 58999999999999999987643 23 348999999 97654210 124
Q ss_pred CcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEEEc
Q 047022 258 GNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++||+|++...-.+.+.. ....+++.+.++|+|||++++..
T Consensus 164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 689999986432221111 24678999999999999987643
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=96.14 Aligned_cols=112 Identities=19% Similarity=0.237 Sum_probs=84.8
Q ss_pred CEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
..+||||||.|.++..+|+. ++..++|+|++...+..+.+++...++. |+.+..+ |+..+-.. -++++++|.|.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~-da~~~l~~---~~~~~~v~~i~ 93 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRG-DARELLRR---LFPPGSVDRIY 93 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES--CTTHHHH---HSTTTSEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEc-cHHHHHhh---cccCCchheEE
Confidence 38999999999999999988 8899999999999999999999998885 9999999 98773211 12458999999
Q ss_pred EchhhHhhChh------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 265 ICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 265 s~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
...-=.+.-.. --+.+++.+.++|+|||.+.+.+....
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 98543332211 135799999999999999988876544
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-08 Score=100.73 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=88.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...++.+.+.+.+.++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++++..+++. ++++..+ |+.+..+
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~-d~~~~l~ 354 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAG-TLETVLP 354 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeC-CHHHHHH
Confidence 344556666777778899999999999999999985 679999999999999999999988874 8999999 9876321
Q ss_pred CCccccCCCcccEEEEchhhHhhChhc-HHHHHHHHHhccccCceEEEEc
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
. + .+..++||+|+.. -|... ...+++.+.+ ++|++.++++.
T Consensus 355 ~-~-~~~~~~~D~vi~d-----PPr~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 355 K-Q-PWAGQIPDVLLLD-----PPRKGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred H-H-HhcCCCCCEEEEC-----cCCCCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 0 0 0123579999975 22112 3556665554 88988877764
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-09 Score=106.56 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=77.7
Q ss_pred CCEEEEecCCchHHHHHHHHhc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQT-----GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~-----~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
+..|||+|||+|.++..+++.. ..+|++|+.|+......++++..+++.++|+++.+ |.++.. ...+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~-d~r~v~-------lpek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHG-DMREVE-------LPEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES--TTTSC-------HSS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeC-cccCCC-------CCCc
Confidence 5689999999999998777641 25999999999988888888888899999999999 999987 3368
Q ss_pred ccEEEEchhhHhhC-hhcHHHHHHHHHhccccCceE
Q 047022 260 FSTVFICGMIEAVG-HDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 260 fD~Ivs~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~ 294 (381)
+|+|||-.+= .++ .+-.++.+....+.|||||..
T Consensus 259 vDIIVSElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 259 VDIIVSELLG-SFGDNELSPECLDAADRFLKPDGIM 293 (448)
T ss_dssp EEEEEE---B-TTBTTTSHHHHHHHGGGGEEEEEEE
T ss_pred eeEEEEeccC-CccccccCHHHHHHHHhhcCCCCEE
Confidence 9999995443 233 244677888999999999983
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-09 Score=98.69 Aligned_cols=106 Identities=24% Similarity=0.299 Sum_probs=86.3
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+-.+..|||+|||+|.+++..|+....+|+++|.|. +.+.|++.+..+++.+.|++..+ .++++. ++..+.|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~g-kvEdi~------LP~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKG-KVEDIE------LPVEKVD 129 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeec-ceEEEe------cCcccee
Confidence 457899999999999999999997435899999986 45999999999999989999999 998885 4568999
Q ss_pred EEEEchhhHhhChhc-HHHHHHHHHhccccCceEE
Q 047022 262 TVFICGMIEAVGHDY-MEELFSCCESLLAENGLSC 295 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~ 295 (381)
+|+|-+|=..+--+. +..++-.=.+.|+|||.++
T Consensus 130 iIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 130 IIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 999988765553222 4555656678999999943
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=90.43 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=80.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.++.+|||+|||+|.+++.++.+...+|+++|+++..++.++++++..++. ++++..+ |+.+..+ ...++||+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~-D~~~~l~-----~~~~~fDl 124 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNT-NALSFLA-----QPGTPHNV 124 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEc-hHHHHHh-----hcCCCceE
Confidence 467899999999999999765544569999999999999999999988875 7999999 9865321 12356999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHh--ccccCceEEEEcCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCES--LLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~--~LkpgG~~~i~~~~ 300 (381)
|++.--+.. .-....++.+.. +|+|+|.+++..+.
T Consensus 125 V~~DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 125 VFVDPPFRK---GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEECCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 999744211 123455555554 37899998887654
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-09 Score=93.71 Aligned_cols=144 Identities=20% Similarity=0.230 Sum_probs=100.8
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCC-CCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGL-QDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl-~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
+....++.|.+|||.+.|-|..++..+++ |+ +|..++.+++.++.|.-+-=..++ ..+|+++.+ |..+.-. .
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilG-D~~e~V~----~ 200 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILG-DAYEVVK----D 200 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecc-cHHHHHh----c
Confidence 44555677999999999999999999997 77 999999999999888755322222 235899999 9877642 3
Q ss_pred cCCCcccEEEEch-hhHhhChhcHHHHHHHHHhccccCceEEEEc--CCCCCCCCCCchhhhhhhccCCCCCCCHHHHHH
Q 047022 255 LFLGNFSTVFICG-MIEAVGHDYMEELFSCCESLLAENGLSCSTV--PDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTS 331 (381)
Q Consensus 255 ~~~~~fD~Ivs~~-~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~--~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~ 331 (381)
+.+.+||+|+-.- -|.+.+.-+-.++.++++|+|||||.++.-+ |..+|... .+ ...+.+
T Consensus 201 ~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~---------------d~--~~gVa~ 263 (287)
T COG2521 201 FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL---------------DL--PKGVAE 263 (287)
T ss_pred CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC---------------Ch--hHHHHH
Confidence 6788999998632 2223333356889999999999999966544 33333211 11 233445
Q ss_pred HHHhcCCcEEEEE
Q 047022 332 AMTSSSRLCVEHL 344 (381)
Q Consensus 332 ~l~~~~Gf~v~~~ 344 (381)
.+. +.||++++.
T Consensus 264 RLr-~vGF~~v~~ 275 (287)
T COG2521 264 RLR-RVGFEVVKK 275 (287)
T ss_pred HHH-hcCceeeee
Confidence 555 489997654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=88.76 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=78.3
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEecCccccCcCCccccCCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAG--LQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~g--l~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
..++.+|||+|||+|..++.++.. ...+|+.+|.++ .++.++.++..++ ...++.+... |+.+..... .....
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L-~Wg~~~~~~--~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPL-DWGDELDSD--LLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE---TTS-HHHH--HHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEE-EecCccccc--ccccc
Confidence 457889999999999999999986 577999999999 8999999998876 5568899888 886521000 12346
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+||+|++..++..- +..+.+++.+.++|+|+|.++++.+.+
T Consensus 119 ~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 119 SFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 89999999998875 678999999999999999987776544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-08 Score=107.36 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=83.1
Q ss_pred CCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC---------------CCCeEEEEecCccccC
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGL---------------QDTSDYIFVITVNCLK 248 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl---------------~~~i~~~~~~d~~~l~ 248 (381)
+.+|||+|||+|.+++.++++ +..+|+++|+|+++++.|++++..+++ .++++++.+ |+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~s-Dl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYES-DLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEEC-chhhhc
Confidence 468999999999999999987 457999999999999999999987643 247999999 986643
Q ss_pred cCCccccCCCcccEEEEchh--------------hHhhC-------------------h---hcHHHHHHHHHhccccCc
Q 047022 249 PTNMTELFLGNFSTVFICGM--------------IEAVG-------------------H---DYMEELFSCCESLLAENG 292 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~--------------l~~~~-------------------~---~~~~~~l~~~~~~LkpgG 292 (381)
. ....+||+|||+-- .+|-| . .-+..++.++.++|+|||
T Consensus 198 ~-----~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG 272 (1082)
T PLN02672 198 R-----DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG 272 (1082)
T ss_pred c-----ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC
Confidence 1 01136999999531 11100 0 113567888889999999
Q ss_pred eEEEEcCC
Q 047022 293 LSCSTVPD 300 (381)
Q Consensus 293 ~~~i~~~~ 300 (381)
.+++.+..
T Consensus 273 ~l~lEiG~ 280 (1082)
T PLN02672 273 IMIFNMGG 280 (1082)
T ss_pred EEEEEECc
Confidence 99987754
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-09 Score=102.43 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=125.0
Q ss_pred HHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh
Q 047022 126 QARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ 205 (381)
Q Consensus 126 ~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~ 205 (381)
...+.+.+.|+...++ |...+...+++ +-+ .+....++...+.-....-.....++..++|+|||-|....+++..
T Consensus 56 ~~~e~~~~~y~~~~dl-~~~~w~~~~h~--~~~-~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f 131 (364)
T KOG1269|consen 56 DLPEQIAKYYNNSTDL-YERNWGQSFHF--GRI-PEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVF 131 (364)
T ss_pred ccchHHHHHhcccchh-hhhhhccchhc--cCc-cchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHh
Confidence 5566788899999899 88888877654 333 2222333332222222233344578889999999999999999987
Q ss_pred cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHH
Q 047022 206 TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCE 285 (381)
Q Consensus 206 ~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~ 285 (381)
.++.++|+|.++.++..+.......++..+..+..+ |+.+.+ ++++.||.+-+..+.+|.+ +...+++++.
T Consensus 132 ~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~-~~~~~~------fedn~fd~v~~ld~~~~~~--~~~~~y~Ei~ 202 (364)
T KOG1269|consen 132 KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVA-DFGKMP------FEDNTFDGVRFLEVVCHAP--DLEKVYAEIY 202 (364)
T ss_pred ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehh-hhhcCC------CCccccCcEEEEeecccCC--cHHHHHHHHh
Confidence 778999999999999999998888888877788778 998887 6789999999999999995 5899999999
Q ss_pred hccccCceEEE
Q 047022 286 SLLAENGLSCS 296 (381)
Q Consensus 286 ~~LkpgG~~~i 296 (381)
++++|||+.+.
T Consensus 203 rv~kpGG~~i~ 213 (364)
T KOG1269|consen 203 RVLKPGGLFIV 213 (364)
T ss_pred cccCCCceEEe
Confidence 99999999665
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=97.09 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++.+ |+.+.+
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~-Dal~~~- 98 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEG-DALKTE- 98 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC-CHhhhc-
Confidence 355668888888889999999999999999999985 77999999999999999999887765678999999 997765
Q ss_pred CCccccCCCcccEEEEc
Q 047022 250 TNMTELFLGNFSTVFIC 266 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~ 266 (381)
...||+|+++
T Consensus 99 -------~~~~d~VvaN 108 (294)
T PTZ00338 99 -------FPYFDVCVAN 108 (294)
T ss_pred -------ccccCEEEec
Confidence 1468999885
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-08 Score=87.05 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=85.6
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCE---------EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCK---------YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV 244 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~---------v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~ 244 (381)
.++.....+++..|||--||+|++.++.+.. .+.. +.|.|+++.+++.|++++...++.+.+.+... |+
T Consensus 19 ~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~-D~ 97 (179)
T PF01170_consen 19 ALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW-DA 97 (179)
T ss_dssp HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE---G
T ss_pred HHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec-ch
Confidence 5667777889999999999999999998775 3444 88999999999999999999999889999999 99
Q ss_pred cccCcCCccccCCCcccEEEEchhhHh-hC-----hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEA-VG-----HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~-~~-----~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.+++ +..+++|.|+++--... ++ .+-+..+++++.++|++ ..++++..
T Consensus 98 ~~l~------~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~ 151 (179)
T PF01170_consen 98 RELP------LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS 151 (179)
T ss_dssp GGGG------GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred hhcc------cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence 9987 45689999999642110 11 12356788999999999 44444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=90.52 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=74.4
Q ss_pred HHHHcCCCCCCEEEEecCCchH----HHHHHHHh----c--CCEEEEEcCCHHHHHHHHHHH--------------HH--
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGT----LAIEIVRQ----T--GCKYTGITLSELQLKYAEIKV--------------KE-- 229 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~----~~~~la~~----~--~~~v~gvDis~~~~~~a~~~~--------------~~-- 229 (381)
+++.....+.-+|+..||++|. +++.+.+. . ..+++|+|+|+.+++.|++-. ..
T Consensus 23 ~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 23 LLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp -----CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred hccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 3333333355799999999994 44444441 1 358999999999999998611 00
Q ss_pred ---cC--------CCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 230 ---AG--------LQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 230 ---~g--------l~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.+ +..+|+|... |..+.+ ...+.||+|+|.+++-++..+....+++.+++.|+|||.+++..
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~-NL~~~~------~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRH-NLLDPD------PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE---TT-S------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred cccCCCceeEChHHcCceEEEec-ccCCCC------cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 00 1257899999 888822 14589999999999999988888999999999999999999875
Q ss_pred C
Q 047022 299 P 299 (381)
Q Consensus 299 ~ 299 (381)
.
T Consensus 176 s 176 (196)
T PF01739_consen 176 S 176 (196)
T ss_dssp T
T ss_pred C
Confidence 3
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=92.15 Aligned_cols=96 Identities=13% Similarity=0.192 Sum_probs=73.0
Q ss_pred CCCEEEEecCCchHHHHHHHHh----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
.+.+|||+|||+|.+++.++++ ...+|+++|+++.+++.|+++.. ++.+... |+...+ ..++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~-D~~~~~-------~~~~ 114 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINA-DALTTE-------FDTL 114 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEc-chhccc-------ccCC
Confidence 3679999999999999999875 24689999999999999997742 5889999 987654 2468
Q ss_pred ccEEEEchhhHhh----------ChhcHHHHHHHHHhccccCce
Q 047022 260 FSTVFICGMIEAV----------GHDYMEELFSCCESLLAENGL 293 (381)
Q Consensus 260 fD~Ivs~~~l~~~----------~~~~~~~~l~~~~~~LkpgG~ 293 (381)
||+||++--+.-. +..-...+++.+.++++||+.
T Consensus 115 FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 115 FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999996533211 111245688888887777775
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-09 Score=93.62 Aligned_cols=170 Identities=12% Similarity=0.111 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 169 q~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..+..+++.+.-. ....++|||||-|.+..++..+.-.+++-+|.|-.|++.++..- ..++ .+...++ |-+.++
T Consensus 59 g~rlaDrvfD~kk--~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~-DEE~Ld 132 (325)
T KOG2940|consen 59 GDRLADRVFDCKK--SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVG-DEEFLD 132 (325)
T ss_pred HHHHHHHHHHHhh--hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce--EEEEEec-chhccc
Confidence 3455555554433 34589999999999999998763347999999999999887642 1222 3566778 888887
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCC-CCCCCchhhhhhhccCCCCCCCHH
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCY-DEHSLGPGFIKEYIFPSGCLPSLR 327 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~-~~~~~~~~~i~~yi~pgg~lp~~~ 327 (381)
+.++++|+|+++..+|++ .+++..+.+|+..|||+|.++-+...... .+.+- .-.+...-.-||.-|.++
T Consensus 133 ------f~ens~DLiisSlslHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~-slqLAelER~GGiSphiS 203 (325)
T KOG2940|consen 133 ------FKENSVDLIISSLSLHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRC-SLQLAELEREGGISPHIS 203 (325)
T ss_pred ------ccccchhhhhhhhhhhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHH-HhhHHHHHhccCCCCCcC
Confidence 788999999999999999 56899999999999999997765433221 11111 111111122345444433
Q ss_pred HH-----HHHHHhcCCcEEE--EEEecchhHHH
Q 047022 328 RV-----TSAMTSSSRLCVE--HLENIETHYYQ 353 (381)
Q Consensus 328 ~~-----~~~l~~~~Gf~v~--~~~~~~~~y~~ 353 (381)
-+ +..+...+||... +...+...|..
T Consensus 204 Pf~qvrDiG~LL~rAGF~m~tvDtDEi~v~Yp~ 236 (325)
T KOG2940|consen 204 PFTQVRDIGNLLTRAGFSMLTVDTDEIVVGYPR 236 (325)
T ss_pred hhhhhhhhhhHHhhcCcccceecccceeecCch
Confidence 22 1334456899764 45555555544
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=87.64 Aligned_cols=150 Identities=11% Similarity=0.112 Sum_probs=110.6
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
..-+||||.||.|...+.+... +. ..|...|.|+..++..++.+++.|+.+-++|..+ |+.+.. ++.. .....
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~-dAfd~~--~l~~-l~p~P 210 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQG-DAFDRD--SLAA-LDPAP 210 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEec-CCCCHh--Hhhc-cCCCC
Confidence 4569999999999998888776 33 5899999999999999999999999977799999 987643 1111 13567
Q ss_pred cEEEEchhhHhhChhc-HHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC--CC-----CCCCHHHHHHH
Q 047022 261 STVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP--SG-----CLPSLRRVTSA 332 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p--gg-----~lp~~~~~~~~ 332 (381)
++++.++.+|.+++.+ ....++.+.+++.|||+++.|..++. +...+|.+-+.. +| ...+..|+ ..
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH-----PQle~IAr~LtsHr~g~~WvMRrRsq~Em-D~ 284 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH-----PQLEMIARVLTSHRDGKAWVMRRRSQAEM-DQ 284 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC-----cchHHHHHHHhcccCCCceEEEecCHHHH-HH
Confidence 9999999999998765 45579999999999999888764322 233333332221 11 12456666 56
Q ss_pred HHhcCCcEEEE
Q 047022 333 MTSSSRLCVEH 343 (381)
Q Consensus 333 l~~~~Gf~v~~ 343 (381)
+.+.+||+-.+
T Consensus 285 Lv~~aGF~K~~ 295 (311)
T PF12147_consen 285 LVEAAGFEKID 295 (311)
T ss_pred HHHHcCCchhh
Confidence 66679998543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=93.51 Aligned_cols=178 Identities=19% Similarity=0.118 Sum_probs=113.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
-.+..|||+|||+|.++..+++....+|.+++.| +|.++|++.++.+.+.++|.++.+ .++++. .+++.|+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~G-KiEdie-------LPEk~Dv 246 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPG-KIEDIE-------LPEKVDV 246 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccC-cccccc-------CchhccE
Confidence 4678999999999999999998634589999987 689999999999999999999999 998876 3488999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCch---------hhhhhhccCCCCCCCHHHHHHHH
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGP---------GFIKEYIFPSGCLPSLRRVTSAM 333 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~---------~~i~~yi~pgg~lp~~~~~~~~l 333 (381)
||+--|-.-+-.+..-+..-..++.|||+|..+=++.+-...++.... .|..+--|-|-.+.++. ..+.
T Consensus 247 iISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~--g~a~ 324 (517)
T KOG1500|consen 247 IISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLY--GSAH 324 (517)
T ss_pred EEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhh--hhhh
Confidence 999554333322223333345669999999977655442222222211 12111123333333321 0111
Q ss_pred HhcCCcEEEEEEecchhHHHHHHHHHHHHHHhHHHHHh
Q 047022 334 TSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILA 371 (381)
Q Consensus 334 ~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f~~~~~~~~~ 371 (381)
.+-..=-+++.-+++.-.+.++.+-..-++...+.+..
T Consensus 325 ~eYFrQPvVDtFD~RilmA~sv~h~~dF~~~kEedlh~ 362 (517)
T KOG1500|consen 325 QEYFRQPVVDTFDIRILMAKSVFHVIDFLNMKEEDLHE 362 (517)
T ss_pred hhhhccccccccccceeeccchHhhhhhhhcccchhee
Confidence 11011135666666666677777766666555544443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=89.65 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCCC-CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIEKVKLVK-GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~~l~~~~-~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+-++.+++.+.-.| +..|-|+|||.+.++..+. .+.+|...|+-.. +-.+..+ |...+|
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~----------------n~~Vtac-dia~vP- 117 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP----------------NPRVTAC-DIANVP- 117 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH----S---EEEEESS-S----------------STTEEES--TTS-S-
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCceEEEeeccCC----------------CCCEEEe-cCccCc-
Confidence 44677788776544 5689999999999986553 2568999998642 2346678 999998
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHH
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRV 329 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~ 329 (381)
+++++.|++|.+.++.- .|+..+++++.|+|||||.+.|.--..++ .....+
T Consensus 118 -----L~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf--------------------~~~~~F 169 (219)
T PF05148_consen 118 -----LEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSRF--------------------ENVKQF 169 (219)
T ss_dssp -------TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------------------S-HHHH
T ss_pred -----CCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEecccC--------------------cCHHHH
Confidence 67899999999877644 48999999999999999998886433222 245666
Q ss_pred HHHHHhcCCcEEEEEEe
Q 047022 330 TSAMTSSSRLCVEHLEN 346 (381)
Q Consensus 330 ~~~l~~~~Gf~v~~~~~ 346 (381)
++.+. ..||.+...+.
T Consensus 170 ~~~~~-~~GF~~~~~d~ 185 (219)
T PF05148_consen 170 IKALK-KLGFKLKSKDE 185 (219)
T ss_dssp HHHHH-CTTEEEEEEE-
T ss_pred HHHHH-HCCCeEEeccc
Confidence 67666 58999887554
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.1e-08 Score=88.67 Aligned_cols=117 Identities=15% Similarity=0.262 Sum_probs=85.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
...+..+||+|||+|..++.++.. +.++++++|.|+..+..|.+++...++.+++.++.- +.+.-..... ....+++
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~-~me~d~~~~~-~l~~~~~ 223 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN-IMESDASDEH-PLLEGKI 223 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEec-cccccccccc-ccccCce
Confidence 345568999999999999999887 678999999999999999999999999999988854 4332110000 1345899
Q ss_pred cEEEEchhh------HhhC------------------hhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 261 STVFICGMI------EAVG------------------HDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 261 D~Ivs~~~l------~~~~------------------~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+++|+--. ..+. .+.+..++.-+.|.|+|||.+.+....
T Consensus 224 dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 224 DLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred eEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 999996311 0000 012345777788999999998887653
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=93.60 Aligned_cols=86 Identities=23% Similarity=0.205 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
.+.++.+++.+.+.++++|||||||+|.++..++++ +.+++++|+++.+++.+++++.. .+++++..+ |+.+++
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~-D~~~~~- 88 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEG-DALKVD- 88 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEe-ccccCC-
Confidence 455668888888889999999999999999999997 77999999999999999988754 248999999 998876
Q ss_pred CCccccCCCcccEEEEchh
Q 047022 250 TNMTELFLGNFSTVFICGM 268 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~ 268 (381)
+ ..||.|+++-.
T Consensus 89 -----~--~~~d~Vv~NlP 100 (258)
T PRK14896 89 -----L--PEFNKVVSNLP 100 (258)
T ss_pred -----c--hhceEEEEcCC
Confidence 2 35899998743
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.9e-08 Score=96.55 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=83.5
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..+.+.+...++.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|+++++.+++. ++++..+ |+.+....
T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~-d~~~~~~~--- 296 (374)
T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAAL-DSAKFATA--- 296 (374)
T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEC-CHHHHHHh---
Confidence 34444444345679999999999999999975 789999999999999999999998885 8999999 98764310
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..++||+|+..---..+ ...+++.+. .++|++.++++.
T Consensus 297 --~~~~~D~vi~DPPr~G~----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 297 --QMSAPELVLVNPPRRGI----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred --cCCCCCEEEECCCCCCC----cHHHHHHHH-hcCCCeEEEEEe
Confidence 12469999987221111 244555554 479999888875
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-08 Score=92.49 Aligned_cols=115 Identities=20% Similarity=0.207 Sum_probs=91.6
Q ss_pred CEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
..+||||||.|.+...+|++ +...++|||+....+..|.+++.+.++. |+.+... |+..+-.. -+++++.|.|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~-DA~~~l~~---~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCG-DAVEVLDY---LIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcC-CHHHHHHh---cCCCCCeeEEE
Confidence 48999999999999999998 8889999999999999999999999986 8999999 98776321 02345999999
Q ss_pred EchhhHhhChh------cHHHHHHHHHhccccCceEEEEcCCCCCCC
Q 047022 265 ICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTVPDQCYDE 305 (381)
Q Consensus 265 s~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~ 305 (381)
.++.=.|--.+ -.+.+++.+.++|+|||.+.+.+....|..
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e 171 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFE 171 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHH
Confidence 98432222111 245899999999999999988887655543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-08 Score=94.09 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+.+++.+.+.++.+|||||||+|.++..++++ +.+|+++|+++.+++.+++++.. ++++++.+ |+.+++.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~-D~~~~~~- 101 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEG-DALKVDL- 101 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEC-hhhcCCH-
Confidence 34567888888889999999999999999999997 56999999999999999887642 47999999 9988762
Q ss_pred CccccCCCcccEEEEc
Q 047022 251 NMTELFLGNFSTVFIC 266 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~ 266 (381)
..-.+|.|+++
T Consensus 102 -----~~~~~~~vv~N 112 (272)
T PRK00274 102 -----SELQPLKVVAN 112 (272)
T ss_pred -----HHcCcceEEEe
Confidence 11115888887
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-08 Score=88.95 Aligned_cols=123 Identities=17% Similarity=0.256 Sum_probs=92.4
Q ss_pred HHHHHHHcCCCCC-CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKG-QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~-~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
++.+++.+...|+ ..|-|+|||-+.++. .--..|+..|+-.. +-++..+ |++++|
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~----------------~~~V~~c-Dm~~vP--- 223 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV----------------NERVIAC-DMRNVP--- 223 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeecC----------------CCceeec-cccCCc---
Confidence 5778888876654 578899999988765 22457999998542 4567788 999988
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHH
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTS 331 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~ 331 (381)
+++++.|++|++.++. + .|+..+++++.|+|+|||.++|.--..+ +++...+.+
T Consensus 224 ---l~d~svDvaV~CLSLM--g-tn~~df~kEa~RiLk~gG~l~IAEv~SR--------------------f~dv~~f~r 277 (325)
T KOG3045|consen 224 ---LEDESVDVAVFCLSLM--G-TNLADFIKEANRILKPGGLLYIAEVKSR--------------------FSDVKGFVR 277 (325)
T ss_pred ---CccCcccEEEeeHhhh--c-ccHHHHHHHHHHHhccCceEEEEehhhh--------------------cccHHHHHH
Confidence 6789999999886664 3 5899999999999999999998753322 244555666
Q ss_pred HHHhcCCcEEEEEEe
Q 047022 332 AMTSSSRLCVEHLEN 346 (381)
Q Consensus 332 ~l~~~~Gf~v~~~~~ 346 (381)
++.. .||.+.+...
T Consensus 278 ~l~~-lGF~~~~~d~ 291 (325)
T KOG3045|consen 278 ALTK-LGFDVKHKDV 291 (325)
T ss_pred HHHH-cCCeeeehhh
Confidence 6664 8998876543
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-08 Score=90.17 Aligned_cols=113 Identities=17% Similarity=0.305 Sum_probs=78.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcC-------------------------------
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAG------------------------------- 231 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~g------------------------------- 231 (381)
.+..+|||||..|.++..+|+..++ .|.|+||++..+..|+++++...
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4578999999999999999999665 69999999999999999764210
Q ss_pred ---CCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh--Hhh--ChhcHHHHHHHHHhccccCceEEEEc
Q 047022 232 ---LQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI--EAV--GHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 232 ---l~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l--~~~--~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+++++.|... ++.-...+-+ .+....||+|+|..+- -|+ +++.+..+|+++.++|.|||++++.-
T Consensus 138 t~~~p~n~~f~~~-n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKE-NYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccc-cEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 1112222222 2111110000 1234789999985532 233 45678999999999999999998864
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-08 Score=89.91 Aligned_cols=99 Identities=18% Similarity=0.291 Sum_probs=75.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
++++++|||+.||.|.+++.+|+. .+..|+++|++|..++.+++++..+++.+++....+ |.+++. ..+.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~-D~~~~~-------~~~~~ 170 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVING-DAREFL-------PEGKF 170 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES--GGG----------TT-E
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcC-CHHHhc-------Ccccc
Confidence 568999999999999999999984 467899999999999999999999999999999999 999887 35889
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
|.|+.. .|. ....++..+.+++++||.+
T Consensus 171 drvim~-----lp~-~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 171 DRVIMN-----LPE-SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEEE-------TS-SGGGGHHHHHHHEEEEEEE
T ss_pred CEEEEC-----ChH-HHHHHHHHHHHHhcCCcEE
Confidence 999997 332 2346788899999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.4e-08 Score=83.84 Aligned_cols=78 Identities=24% Similarity=0.414 Sum_probs=65.6
Q ss_pred HcCCCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 179 KVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
....-.|.+|+|+|||+|.+++.++-. | .+|+|+|+++++++.+++++.+ +.+++.|..+ |.++..
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~-dv~~~~--------- 106 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEE--LLGDVEFVVA-DVSDFR--------- 106 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEc-chhhcC---------
Confidence 333446789999999999999998874 6 6899999999999999999987 4468999999 999887
Q ss_pred CcccEEEEchhh
Q 047022 258 GNFSTVFICGMI 269 (381)
Q Consensus 258 ~~fD~Ivs~~~l 269 (381)
+.+|.++.+--+
T Consensus 107 ~~~dtvimNPPF 118 (198)
T COG2263 107 GKFDTVIMNPPF 118 (198)
T ss_pred CccceEEECCCC
Confidence 789988876433
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.1e-08 Score=85.98 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=92.2
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+++.+ ..+++||||.=+|.-++..|.. .+.+|+++|++++..+.+.+..+.+|+..+|+++++ +..+.-.+.
T Consensus 66 ~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g-~a~esLd~l 141 (237)
T KOG1663|consen 66 QMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG-PALESLDEL 141 (237)
T ss_pred HHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeec-chhhhHHHH
Confidence 3444444 4679999999999998888877 578999999999999999999999999999999999 765432222
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
++....++||.++.- -...++..+++++.+++|+||++++.
T Consensus 142 ~~~~~~~tfDfaFvD-----adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 142 LADGESGTFDFAFVD-----ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HhcCCCCceeEEEEc-----cchHHHHHHHHHHHhhcccccEEEEe
Confidence 233456899999986 33346679999999999999998874
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=89.56 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=64.0
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEA-GLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~-gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.+|||||||+|.+...++.+ ++.+++|+|+++..++.|++++..+ ++.++|++....|...+... + ....+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~-i-~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKG-I-IHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhc-c-cccCCceE
Confidence 5689999999999888777665 7889999999999999999999999 79889988653133222100 0 01246899
Q ss_pred EEEEchhhH
Q 047022 262 TVFICGMIE 270 (381)
Q Consensus 262 ~Ivs~~~l~ 270 (381)
+|+|+--++
T Consensus 192 livcNPPf~ 200 (321)
T PRK11727 192 ATLCNPPFH 200 (321)
T ss_pred EEEeCCCCc
Confidence 999985443
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-08 Score=92.81 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=82.5
Q ss_pred CCEEEEecCCchH----HHHHHHHhc-----CCEEEEEcCCHHHHHHHHHHH------------------HH--------
Q 047022 185 GQEVLEIGCGWGT----LAIEIVRQT-----GCKYTGITLSELQLKYAEIKV------------------KE-------- 229 (381)
Q Consensus 185 ~~~VLDiGcG~G~----~~~~la~~~-----~~~v~gvDis~~~~~~a~~~~------------------~~-------- 229 (381)
.-+|+..||++|. +++.+.+.. ..+|+|+|+|+..++.|++-. ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3799999999993 444444421 368999999999999998741 00
Q ss_pred ----cCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 230 ----AGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 230 ----~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..+...|+|... |..+.+. ...+.||+|+|.+++.|+.++....+++++.+.|+|||++++..
T Consensus 196 ~~v~~~lr~~V~F~~~-NL~~~~~-----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQL-NLLAKQW-----AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcc-cCCCCCC-----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 012356788888 8876431 12478999999999999988889999999999999999987764
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-07 Score=91.26 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=89.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.|++||++-|=||+++.++|.. |+ +|++||+|...++.|++++.-+|+. +++.++++ |+.+.-... .-...+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~-Dvf~~l~~~--~~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVG-DVFKWLRKA--ERRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehh-hHHHHHHHH--HhcCCccc
Confidence 3899999999999999999985 87 9999999999999999999999985 46899999 986652110 01235899
Q ss_pred EEEEch--------hhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 262 TVFICG--------MIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 262 ~Ivs~~--------~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
+|+.-- +..-+ .+++..++..+.++|+|||.+++++....
T Consensus 293 lIilDPPsF~r~k~~~~~~-~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 293 LIILDPPSFARSKKQEFSA-QRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred EEEECCcccccCcccchhH-HHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 999731 11111 24678899999999999999888875543
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-07 Score=86.10 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+.+++.+...++++|||||||+|.++..++++ +..++++|+++.+++.++++... .+++++..+ |+.+.+
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~-D~~~~~-- 88 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEG-DALKVD-- 88 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEEC-chhcCC--
Confidence 45567888888888999999999999999999986 56899999999999999887643 357999999 998876
Q ss_pred CccccCCCccc---EEEEc
Q 047022 251 NMTELFLGNFS---TVFIC 266 (381)
Q Consensus 251 ~l~~~~~~~fD---~Ivs~ 266 (381)
+ ..|| +|+++
T Consensus 89 ----~--~~~d~~~~vvsN 101 (253)
T TIGR00755 89 ----L--PDFPKQLKVVSN 101 (253)
T ss_pred ----h--hHcCCcceEEEc
Confidence 1 2466 77776
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=88.33 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=81.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEecCccccCcCCccccCCCc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAG--L-QDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~g--l-~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
...+||.||+|.|..+.+++++. ..+++.+|+++++++.|++.+...+ + .++++++.+ |.+..-. ...++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~-Da~~~L~-----~~~~~ 176 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIN-DARAELE-----KRDEK 176 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEC-hhHHHHh-----hCCCC
Confidence 45699999999999999998863 4689999999999999999875321 1 368999999 9887531 13478
Q ss_pred ccEEEEchh-------hHhhChhcHHHHHH-HHHhccccCceEEEEc
Q 047022 260 FSTVFICGM-------IEAVGHDYMEELFS-CCESLLAENGLSCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~-------l~~~~~~~~~~~l~-~~~~~LkpgG~~~i~~ 298 (381)
||+|++-.. ..++ ...++++ .+.+.|+|||++++..
T Consensus 177 yDvIi~D~~dp~~~~~~~~L---yt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 177 FDVIIGDLADPVEGGPCYQL---YTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ccEEEecCCCccccCcchhh---ccHHHHHHHHHHhcCCCcEEEEec
Confidence 999998621 1111 2357887 8999999999977653
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-07 Score=92.93 Aligned_cols=115 Identities=12% Similarity=0.127 Sum_probs=89.6
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
.+++|.+|||++||.|+-+.+++... ...++++|+++.-++.+++++...|+. ++.+... |...+.. ...+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~-D~~~~~~-----~~~~ 182 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHF-DGRVFGA-----ALPE 182 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeC-chhhhhh-----hchh
Confidence 66899999999999999999999873 358999999999999999999999986 6888888 8876541 2336
Q ss_pred cccEEEE----ch--hhHhhC-------hh-------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 259 NFSTVFI----CG--MIEAVG-------HD-------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 259 ~fD~Ivs----~~--~l~~~~-------~~-------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
.||.|+. ++ ++..-+ .+ -..++++.+.+.|||||+++.+++.-.
T Consensus 183 ~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 183 TFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred hcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 7999993 32 222211 11 125788999999999999988887643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=96.91 Aligned_cols=135 Identities=15% Similarity=0.113 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCC-------CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 047022 163 EDLEVGQIRKVSVLIEKVKLV-------KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQD 234 (381)
Q Consensus 163 ~~l~~aq~~~~~~l~~~l~~~-------~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~ 234 (381)
..+.+.|.+.++.....+.+. .+..+||||||.|.++..+|+. +...++|+|++...+..+.+++...++.
T Consensus 319 ~~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~- 397 (506)
T PRK01544 319 KSLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT- 397 (506)
T ss_pred CCCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-
Confidence 357777777766655554432 3568999999999999999988 7889999999999999998888888885
Q ss_pred CeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChh------cHHHHHHHHHhccccCceEEEEcCCCCC
Q 047022 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTVPDQCY 303 (381)
Q Consensus 235 ~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~~~~~ 303 (381)
|+.+... |+..+.. .++++++|.|+..+-=.|.-.. --+.+++.+.++|||||.+.+.+....|
T Consensus 398 N~~~~~~-~~~~~~~----~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y 467 (506)
T PRK01544 398 NFLLFPN-NLDLILN----DLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY 467 (506)
T ss_pred eEEEEcC-CHHHHHH----hcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 8888888 8765431 2456889999998433222111 1357999999999999999888765443
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.1e-07 Score=82.24 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEecCcccc
Q 047022 170 IRKVSVLIEKVKL-VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSD-YIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~-~~~~~d~~~l 247 (381)
..++..+++...+ .++.+|||+|||+|.++..++++...+|+++|++++|+....+ .. .++. +... |++.+
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~---~~---~~v~~~~~~-ni~~~ 132 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR---QD---ERVKVLERT-NIRYV 132 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh---cC---CCeeEeecC-CcccC
Confidence 3556677777765 4778999999999999999999633489999999988875211 11 2332 3444 55544
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..+.+. ..-..+|+++++. ...+..+.++|+| |.+++-+
T Consensus 133 ~~~~~~-~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 133 TPADIF-PDFATFDVSFISL----------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CHhHcC-CCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEEEc
Confidence 322110 1124688777762 3346778999999 7755443
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-08 Score=98.00 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCC--CCC--CEEEEecCCchHHHHHHHHhcCCEEEEEcC---CHHHHHHHHHHHHHcCCCCCeEEEEe
Q 047022 169 QIRKVSVLIEKVKL--VKG--QEVLEIGCGWGTLAIEIVRQTGCKYTGITL---SELQLKYAEIKVKEAGLQDTSDYIFV 241 (381)
Q Consensus 169 q~~~~~~l~~~l~~--~~~--~~VLDiGcG~G~~~~~la~~~~~~v~gvDi---s~~~~~~a~~~~~~~gl~~~i~~~~~ 241 (381)
....+++|.+.+.. ..| ..+||+|||.|+++.++..+ +..+..+.+ .+.|++.|.++ |++.-+.+.
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~-- 170 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPAMIGVL-- 170 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccchhhhhh--
Confidence 34556666666655 222 46899999999999999986 665555443 34566666555 655222221
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
-...+| |+++.||+|-|..++-..... -..++-++.|+|+|||+++.+.|.
T Consensus 171 -~s~rLP------fp~~~fDmvHcsrc~i~W~~~-~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 171 -GSQRLP------FPSNAFDMVHCSRCLIPWHPN-DGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred -cccccc------CCccchhhhhcccccccchhc-ccceeehhhhhhccCceEEecCCc
Confidence 234667 788999999998887655432 256889999999999998888765
|
; GO: 0008168 methyltransferase activity |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.9e-07 Score=74.94 Aligned_cols=101 Identities=11% Similarity=0.077 Sum_probs=71.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+.+.+...++.+|||||||.|. ++..+++ .|..|+++|+++..++.+++. .+++..+ |..+.+.+
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~--------~~~~v~d-Dlf~p~~~--- 73 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKL--------GLNAFVD-DLFNPNLE--- 73 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHh--------CCeEEEC-cCCCCCHH---
Confidence 34555555567899999999996 8888887 499999999999988877665 3678888 98876522
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.-..+|+|.++ -|+.++...+.++.+.+.- -++|.
T Consensus 74 --~y~~a~liysi-----rpp~el~~~~~~la~~~~~--~~~i~ 108 (134)
T PRK04148 74 --IYKNAKLIYSI-----RPPRDLQPFILELAKKINV--PLIIK 108 (134)
T ss_pred --HHhcCCEEEEe-----CCCHHHHHHHHHHHHHcCC--CEEEE
Confidence 34779999998 3444455555555554332 25554
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.9e-07 Score=85.61 Aligned_cols=151 Identities=10% Similarity=0.086 Sum_probs=108.9
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
-...+|+|.|.|..+..+..++ .++.+++.....+-.+.+... . .|+...+ |..+-. .+-|+|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~----gV~~v~g-dmfq~~---------P~~daI~ 241 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-P----GVEHVAG-DMFQDT---------PKGDAIW 241 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-C----Ccceecc-cccccC---------CCcCeEE
Confidence 3789999999999999998863 358888888777766666553 2 2777777 765544 2347999
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEEEcC---C-CCCC----CCCCchhhhhhhccCCCCCCCHHHHHHHHHhc
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP---D-QCYD----EHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSS 336 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~---~-~~~~----~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~ 336 (381)
..++++|+++++..++|++|...|+|||.+++... . .... ......+..+..+.++|.-.+..+. +.+..+
T Consensus 242 mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~-q~l~~~ 320 (342)
T KOG3178|consen 242 MKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEF-QALLPE 320 (342)
T ss_pred EEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHH-Hhcchh
Confidence 99999999999999999999999999999776432 2 1111 1112334445555677777778777 556667
Q ss_pred CCcEEEEEEecchhHH
Q 047022 337 SRLCVEHLENIETHYY 352 (381)
Q Consensus 337 ~Gf~v~~~~~~~~~y~ 352 (381)
+||.+..+.....+|.
T Consensus 321 ~gF~~~~~~~~~~~~~ 336 (342)
T KOG3178|consen 321 EGFPVCMVALTAYSYS 336 (342)
T ss_pred hcCceeEEEeccCccc
Confidence 8999887766655553
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.4e-07 Score=80.57 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=79.5
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-CCC-ccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL-FLG-NFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~-~~~-~fD 261 (381)
++.+|||++||+|.+++.++.+...+|+++|.++..++.+++++...++.+++++..+ |+.+.-. .. ... .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~-D~~~~l~----~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRN-SALRALK----FLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEeh-hHHHHHH----HhhccCCCce
Confidence 5789999999999999999997334899999999999999999999888778999999 9854310 01 112 477
Q ss_pred EEEEchhhHhhChhcHHHHHHHHH--hccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCE--SLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~--~~LkpgG~~~i~~~~ 300 (381)
+|+..--+.. ......++.+. .+|+++|.+++..+.
T Consensus 124 vv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 124 VIYLDPPFFN---GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 7776432221 22445555444 468999988887543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-07 Score=89.51 Aligned_cols=103 Identities=20% Similarity=0.191 Sum_probs=82.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||++||+|.+++.++...+ .+|+++|+++..++.++++++.+++. ++++..+ |+..+.. ..++||+
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~-Da~~~l~------~~~~fD~ 128 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNK-DANALLH------EERKFDV 128 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhh-hHHHHHh------hcCCCCE
Confidence 356999999999999999988644 48999999999999999999988885 6778999 9876531 1367999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+..- + + ....++....+.++|||.++++..+
T Consensus 129 V~lDP-~---G--s~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 129 VDIDP-F---G--SPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred EEECC-C---C--CcHHHHHHHHHHhcCCCEEEEEecC
Confidence 99863 1 2 2467888877889999999998543
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.6e-07 Score=84.92 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEecCCch----HHHHHHHHhc------CCEEEEEcCCHHHHHHHHHHH-----H
Q 047022 164 DLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWG----TLAIEIVRQT------GCKYTGITLSELQLKYAEIKV-----K 228 (381)
Q Consensus 164 ~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G----~~~~~la~~~------~~~v~gvDis~~~~~~a~~~~-----~ 228 (381)
.++.-....+..++..... ..-+|.-.||++| ++++.+.+.. ..+|+++|+|...++.|++-. .
T Consensus 77 ~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~ 155 (268)
T COG1352 77 HFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSREL 155 (268)
T ss_pred HHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHh
Confidence 3444444444444443322 3579999999999 4555555542 468999999999999988521 1
Q ss_pred HcCCC-----------------------CCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHH
Q 047022 229 EAGLQ-----------------------DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCE 285 (381)
Q Consensus 229 ~~gl~-----------------------~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~ 285 (381)
..+++ ..|.|... |..+-+ ...+.||+|+|.+++-++..+....+++.++
T Consensus 156 ~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~-NLl~~~------~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~ 228 (268)
T COG1352 156 LRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRH-NLLDDS------PFLGKFDLIFCRNVLIYFDEETQERILRRFA 228 (268)
T ss_pred hccCCHHHHhhhEeecCCCcEEEChHHhcccEEeec-CCCCCc------cccCCCCEEEEcceEEeeCHHHHHHHHHHHH
Confidence 01221 34667766 665544 1347899999999999998888899999999
Q ss_pred hccccCceEEEEcC
Q 047022 286 SLLAENGLSCSTVP 299 (381)
Q Consensus 286 ~~LkpgG~~~i~~~ 299 (381)
..|+|||.+++...
T Consensus 229 ~~L~~gG~LflG~s 242 (268)
T COG1352 229 DSLKPGGLLFLGHS 242 (268)
T ss_pred HHhCCCCEEEEccC
Confidence 99999999998643
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-07 Score=84.47 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
.++.|+++..+++++.|||||.|||.++..+.+. +.+|+++++++.|+....++......+.+.++..+ |+...+
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~g-D~lK~d--- 120 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHG-DFLKTD--- 120 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEec-ccccCC---
Confidence 4568999999999999999999999999999995 99999999999999999999986666689999999 998765
Q ss_pred ccccCCCcccEEEEc
Q 047022 252 MTELFLGNFSTVFIC 266 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~ 266 (381)
...||.+|++
T Consensus 121 -----~P~fd~cVsN 130 (315)
T KOG0820|consen 121 -----LPRFDGCVSN 130 (315)
T ss_pred -----Ccccceeecc
Confidence 2569999985
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-07 Score=85.68 Aligned_cols=111 Identities=19% Similarity=0.240 Sum_probs=81.5
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+.+|||+-|=+|+++.+++.. |+ +|++||.|...++.+++++..+++. ++++++.. |+.+.-.. + -..++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~-Dvf~~l~~-~--~~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQG-DVFKFLKR-L--KKGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES--HHHHHHH-H--HHTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEec-CHHHHHHH-H--hcCCCCC
Confidence 5889999999999999998874 65 7999999999999999999999986 68999999 98653200 0 0236899
Q ss_pred EEEEch------hhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 262 TVFICG------MIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 262 ~Ivs~~------~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+||+-- .+. + ..++..++..+.++|+|||.++++...+
T Consensus 198 ~IIlDPPsF~k~~~~-~-~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 198 LIILDPPSFAKSKFD-L-ERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEEE--SSEESSTCE-H-HHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred EEEECCCCCCCCHHH-H-HHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 999731 111 1 1467889999999999999988776543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5e-07 Score=79.35 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=84.0
Q ss_pred HHHHHcC--CCCCCEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcC--------C-CCCeEEEE
Q 047022 175 VLIEKVK--LVKGQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAG--------L-QDTSDYIF 240 (381)
Q Consensus 175 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~g--------l-~~~i~~~~ 240 (381)
.+++.|. +.||.+.||+|+|+|.++..++.. .|..++|||.-++.++++++++...- + ..++.+.+
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 4555555 679999999999999999888865 34456999999999999999876532 1 24678899
Q ss_pred ecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 241 VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 241 ~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+ |.+...+ +..+||+|.+.... ...-+++...|+|||.++|-..
T Consensus 151 G-Dgr~g~~------e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 151 G-DGRKGYA------EQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred C-CccccCC------ccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEeec
Confidence 9 9988763 34889999998332 4445567788999999877554
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.3e-07 Score=76.93 Aligned_cols=113 Identities=17% Similarity=0.049 Sum_probs=91.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...++...|.-|||+|.|+|.++..+.++ ....++.++.|++......+.. +.++++.+ |+.++. ..+
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~g-da~~l~-~~l 110 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIING-DAFDLR-TTL 110 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCcccccc-chhhHH-HHH
Confidence 5677778888999999999999999999987 4457999999999999888775 34678888 887764 112
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.+.....||.|+|.--+-.++.....++++.+...|.+||.++
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 2356678999999877777776667889999999999999854
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.4e-07 Score=82.93 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
+.++.+++.+.+.+++.|||||+|.|.++..++++ +.+|+++++++.+++..+++.. ..++++++.+ |+...+
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~-DaLk~d-- 89 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVING-DALKFD-- 89 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeC-chhcCc--
Confidence 55778999999999999999999999999999996 8899999999999999998875 2368999999 998887
Q ss_pred CccccCCC-cccEEEEc
Q 047022 251 NMTELFLG-NFSTVFIC 266 (381)
Q Consensus 251 ~l~~~~~~-~fD~Ivs~ 266 (381)
++.- .++.|+++
T Consensus 90 ----~~~l~~~~~vVaN 102 (259)
T COG0030 90 ----FPSLAQPYKVVAN 102 (259)
T ss_pred ----chhhcCCCEEEEc
Confidence 2211 68999986
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.9e-06 Score=77.29 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=101.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH----------------------------------
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE---------------------------------- 229 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~---------------------------------- 229 (381)
...+||--|||.|.++..+|.. |..+.|.|.|--|+-..+-.+..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 3578999999999999999996 99999999999886543332111
Q ss_pred -----cCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCC
Q 047022 230 -----AGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYD 304 (381)
Q Consensus 230 -----~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~ 304 (381)
.....++....+ |+.++.+.. ...++||+|++++.+... .|...+++.+.++|||||. .|...+-.|.
T Consensus 135 ~p~~~~~~~~~~sm~aG-DF~e~y~~~---~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~-WIN~GPLlyh 207 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAG-DFLEVYGPD---ENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGY-WINFGPLLYH 207 (270)
T ss_pred CcccccCCCCceeEecC-ccEEecCCc---ccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCE-EEecCCcccc
Confidence 001135666777 777664210 113799999999877766 6789999999999999994 5555443332
Q ss_pred CCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEe-cchhH
Q 047022 305 EHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLEN-IETHY 351 (381)
Q Consensus 305 ~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~-~~~~y 351 (381)
..... . -.....-.+.+|+...+. ..||++++.+. ....|
T Consensus 208 ~~~~~---~---~~~~sveLs~eEi~~l~~-~~GF~~~~~~~~i~~~Y 248 (270)
T PF07942_consen 208 FEPMS---I---PNEMSVELSLEEIKELIE-KLGFEIEKEESSILSGY 248 (270)
T ss_pred CCCCC---C---CCCcccCCCHHHHHHHHH-HCCCEEEEEEEeeecCC
Confidence 11000 0 000113456788865555 58999987665 44444
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=81.88 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=83.6
Q ss_pred CEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEecCccccCcCCccccCCCccc
Q 047022 186 QEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAG--L-QDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~g--l-~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+||-||.|.|+.+..++++. -.+++.+||++..++.+++.+.... . .+|++++.+ |..+.-.+ ...+||
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~-Dg~~~v~~-----~~~~fD 151 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIID-DGVEFLRD-----CEEKFD 151 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEec-cHHHHHHh-----CCCcCC
Confidence 699999999999999999983 4689999999999999999886533 2 368999999 98776411 224899
Q ss_pred EEEEchhhHhhChh---cHHHHHHHHHhccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVGHD---YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~---~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+|++...=. .++. .-..+++.|+++|+|+|+++....+
T Consensus 152 vIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 152 VIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 999863222 2210 2378999999999999998876444
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.8e-06 Score=77.47 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=93.2
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
+..|+..+.+.||.+|||-|.|+|.++.++++. +-.++...|....-.+.|.+.++..|+.+++++... |.....-.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hr-DVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHR-DVCGSGFL 172 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEe-ecccCCcc
Confidence 557889999999999999999999999999987 557999999999999999999999999999999999 98766410
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+..+|.|+.. ++ ++-.++-.+..+||.+|.-+.+
T Consensus 173 ----~ks~~aDaVFLD-----lP--aPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 173 ----IKSLKADAVFLD-----LP--APWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred ----ccccccceEEEc-----CC--ChhhhhhhhHHHhhhcCceEEe
Confidence 125789999886 43 3556666777899998864433
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.3e-07 Score=85.07 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=71.4
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
++.+++.+.+.|+..+||.+||.|+.+..+++.. .++|+|+|.++++++.+++++.. .++++++.+ |+.++...
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~-~f~~l~~~ 83 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHG-NFSNLKEV 83 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeC-CHHHHHHH
Confidence 4577888888899999999999999999999884 47999999999999999998754 358999999 99876411
Q ss_pred CccccCCCcccEEEEch
Q 047022 251 NMTELFLGNFSTVFICG 267 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~ 267 (381)
+.. ...++|.|+...
T Consensus 84 -l~~-~~~~vDgIl~DL 98 (296)
T PRK00050 84 -LAE-GLGKVDGILLDL 98 (296)
T ss_pred -HHc-CCCccCEEEECC
Confidence 000 112799999754
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.9e-07 Score=81.68 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=86.1
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC---------------------------CCe
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ---------------------------DTS 236 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~---------------------------~~i 236 (381)
+|.++||||||+-.....-|...-.+++..|.++.-++..++.++..+.. ..|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 57799999999854432222222347999999998888777655432210 124
Q ss_pred E-EEEecCccccCcCCccccCCCcccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhh
Q 047022 237 D-YIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFI 313 (381)
Q Consensus 237 ~-~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i 313 (381)
+ ++.+ |..+.+|-.-......+||+|++..+++.+.. +.+...++++.++|||||.+++..--... .| .+
T Consensus 136 k~Vv~c-DV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t-~Y-----~v 208 (256)
T PF01234_consen 136 KQVVPC-DVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST-YY-----MV 208 (256)
T ss_dssp EEEEE---TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S-EE-----EE
T ss_pred ceEEEe-eccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce-eE-----EE
Confidence 3 5667 88776532100001235999999999998863 35778899999999999996664321110 00 01
Q ss_pred hhhccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 047022 314 KEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLE 345 (381)
Q Consensus 314 ~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~ 345 (381)
...-||. ++-..+.++...+++||.+++.+
T Consensus 209 G~~~F~~--l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 209 GGHKFPC--LPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp TTEEEE-----B-HHHHHHHHHHTTEEEEEEE
T ss_pred CCEeccc--ccCCHHHHHHHHHHcCCEEEecc
Confidence 1111222 23333444444456999998876
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.1e-06 Score=78.42 Aligned_cols=126 Identities=10% Similarity=0.071 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE--EEec
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDY--IFVI 242 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~--~~~~ 242 (381)
++....|++.+ .++..|+|+|||.|.-+..+.+. ...+++++|+|.++++.+.+++.....+ .+++ +.+
T Consensus 64 ~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~g- 139 (319)
T TIGR03439 64 KKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLG- 139 (319)
T ss_pred HHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEe-
Confidence 34445566665 47779999999999876665544 2468999999999999999998744443 4554 778
Q ss_pred CccccCcCCccc-cCCCcccEEEEch-hhHhhChhcHHHHHHHHHh-ccccCceEEEEcCC
Q 047022 243 TVNCLKPTNMTE-LFLGNFSTVFICG-MIEAVGHDYMEELFSCCES-LLAENGLSCSTVPD 300 (381)
Q Consensus 243 d~~~l~~~~l~~-~~~~~fD~Ivs~~-~l~~~~~~~~~~~l~~~~~-~LkpgG~~~i~~~~ 300 (381)
|+.+.-. -++. .......+++..+ ++..+.+.+...+++++++ .|+|||.+++.+.-
T Consensus 140 dy~~~l~-~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 140 TYDDGLA-WLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred cHHHHHh-hcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 8865310 0000 0123457777665 8888888888899999999 99999999887643
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.7e-06 Score=82.96 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
.++.+++.+...+ .+|||++||+|.+++.+++. ..+|+++|+++++++.|++++..+++. ++++..+ |..+.....
T Consensus 186 l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~-d~~~~~~~~ 261 (353)
T TIGR02143 186 MLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRM-SAEEFTQAM 261 (353)
T ss_pred HHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEc-CHHHHHHHH
Confidence 3445555554333 47999999999999999886 469999999999999999999998885 7999999 987643110
Q ss_pred cc--cc---C-----CCcccEEEEchhhHhhChhc-HHHHHHHHHhccccCceEEEEcC
Q 047022 252 MT--EL---F-----LGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~--~~---~-----~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.. .+ . ...||+|+.. -|... ...+++.+. +|++.++++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~v~lD-----PPR~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 262 NGVREFRRLKGIDLKSYNCSTIFVD-----PPRAGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred hhccccccccccccccCCCCEEEEC-----CCCCCCcHHHHHHHH---cCCcEEEEEcC
Confidence 00 00 0 1238999885 22111 234444443 47888888753
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.6e-06 Score=81.59 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
..++.+.+.+... +.+|||++||+|.+++.+++. ..+|+++|+++.+++.+++++..+++. ++++..+ |+.+.-..
T Consensus 194 ~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~-d~~~~l~~ 269 (362)
T PRK05031 194 KMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRM-SAEEFTQA 269 (362)
T ss_pred HHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEC-CHHHHHHH
Confidence 3344555555432 357999999999999998885 569999999999999999999988885 8999999 98763210
Q ss_pred Ccccc-----------CCCcccEEEEchhhHhhChhc-HHHHHHHHHhccccCceEEEEc
Q 047022 251 NMTEL-----------FLGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~-----------~~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+... ...+||+|+.. -|... ...+++.+. +|++.++++.
T Consensus 270 -~~~~~~~~~~~~~~~~~~~~D~v~lD-----PPR~G~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 270 -MNGVREFNRLKGIDLKSYNFSTIFVD-----PPRAGLDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred -HhhcccccccccccccCCCCCEEEEC-----CCCCCCcHHHHHHHH---ccCCEEEEEe
Confidence 0000 01258999985 22111 234444444 4777788875
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.37 E-value=4e-06 Score=73.85 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=79.2
Q ss_pred EEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+++|||+|.|-.++.++-. +..+++.+|.+..-+...+......++. ++++..+ .+++.. ...+||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~-R~E~~~-------~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVING-RAEEPE-------YRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES--HHHTT-------TTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEe-eecccc-------cCCCccEEEe
Confidence 8999999999888777655 7889999999999999999999999996 8999999 998822 4489999999
Q ss_pred chhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 266 CGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 266 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..+ ..+..+++-+...|++||.++.--
T Consensus 122 RAv------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 122 RAV------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ESS------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ehh------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 853 246788899999999999966543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=81.65 Aligned_cols=104 Identities=20% Similarity=0.332 Sum_probs=87.6
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
++++.. ++|.+|||.-||-|.+++.+|++ +. +|+++|++|..++++++++..+++.+.+..+++ |.++..+
T Consensus 181 Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~g-D~rev~~---- 252 (341)
T COG2520 181 RVAELV--KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILG-DAREVAP---- 252 (341)
T ss_pred HHHhhh--cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEec-cHHHhhh----
Confidence 444444 46999999999999999999996 54 499999999999999999999999988999999 9999872
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
..+.+|.|+.. .+ .....++....+++++||.+
T Consensus 253 --~~~~aDrIim~-----~p-~~a~~fl~~A~~~~k~~g~i 285 (341)
T COG2520 253 --ELGVADRIIMG-----LP-KSAHEFLPLALELLKDGGII 285 (341)
T ss_pred --ccccCCEEEeC-----CC-CcchhhHHHHHHHhhcCcEE
Confidence 22789999997 32 23467888889999999983
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-06 Score=84.15 Aligned_cols=117 Identities=16% Similarity=0.223 Sum_probs=93.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...+...++.+...++++|||+=||.|.+++.+|++ ..+|+|+|+++++++.|+++++.+++. |++|..+ +.++..+
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~-~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAG-DAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeC-CHHHHhh
Confidence 455677888888888999999999999999999975 889999999999999999999999997 5999999 9988763
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHH-HHHHHHHhccccCceEEEEc
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYME-ELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~-~~l~~~~~~LkpgG~~~i~~ 298 (381)
.. .....+|.|+.. -|..... .+++.+. .++|-.+++|+.
T Consensus 356 ~~---~~~~~~d~VvvD-----PPR~G~~~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 356 AW---WEGYKPDVVVVD-----PPRAGADREVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred hc---cccCCCCEEEEC-----CCCCCCCHHHHHHHH-hcCCCcEEEEeC
Confidence 21 123578999986 4433344 4444444 467888888886
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-06 Score=79.93 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=80.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCC---CCCeEEEEecCccccCcCCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGL---QDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl---~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+...+||-||.|.|..+..+.+++ ..+++++|+++..++.|++.+..... .+|++++.+ |....-.. ..+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~-Dg~~~l~~-----~~~ 148 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIG-DGRKFLKE-----TQE 148 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEES-THHHHHHT-----SSS
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEh-hhHHHHHh-----ccC
Confidence 356799999999999999998874 46999999999999999998765322 358999999 98765311 224
Q ss_pred -cccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEc
Q 047022 259 -NFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 -~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+||+|+.-..-...+. -.-.++++.+.++|+|||.+++..
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8999998432211111 124789999999999999988765
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=77.39 Aligned_cols=111 Identities=20% Similarity=0.226 Sum_probs=79.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+|.+|||+-||+|.++++++.+...+|+.||.++..++..+++++..++.+++++..+ |....-.. + .....+||+|
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~-d~~~~l~~-~-~~~~~~fDiI 118 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG-DAFKFLLK-L-AKKGEKFDII 118 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES-SHHHHHHH-H-HHCTS-EEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc-CHHHHHHh-h-cccCCCceEE
Confidence 6889999999999999999987345999999999999999999999998878999999 85432100 0 0134789999
Q ss_pred EEchhhHhhChhc-HHHHHHHHH--hccccCceEEEEcCC
Q 047022 264 FICGMIEAVGHDY-MEELFSCCE--SLLAENGLSCSTVPD 300 (381)
Q Consensus 264 vs~~~l~~~~~~~-~~~~l~~~~--~~LkpgG~~~i~~~~ 300 (381)
+..--... .. ....++.+. .+|+++|.+++....
T Consensus 119 flDPPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 119 FLDPPYAK---GLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp EE--STTS---CHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred EECCCccc---chHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 98632221 12 366777776 799999999987654
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.3e-07 Score=76.27 Aligned_cols=74 Identities=26% Similarity=0.334 Sum_probs=57.1
Q ss_pred EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc-ccEEEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN-FSTVFI 265 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~-fD~Ivs 265 (381)
.|+|+.||.|+.++++|+. ..+|+++|+++..++.|+.++.-.|+.++|+++.+ |+.++... +.... ||+|+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~g-D~~~~~~~----~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICG-DFFELLKR----LKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES--HHHHGGG----B------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeC-CHHHHHhh----ccccccccEEEE
Confidence 6999999999999999996 77999999999999999999999999999999999 99876421 12222 899997
Q ss_pred c
Q 047022 266 C 266 (381)
Q Consensus 266 ~ 266 (381)
+
T Consensus 76 S 76 (163)
T PF09445_consen 76 S 76 (163)
T ss_dssp -
T ss_pred C
Confidence 4
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=77.18 Aligned_cols=117 Identities=20% Similarity=0.214 Sum_probs=89.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-----------------------------------------EEEEE
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-----------------------------------------KYTGI 213 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-----------------------------------------~v~gv 213 (381)
.++...+-+++..++|--||+|++++.+|.. +. .++|+
T Consensus 182 Ail~lagw~~~~pl~DPmCGSGTi~IEAAl~-~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~ 260 (381)
T COG0116 182 AILLLAGWKPDEPLLDPMCGSGTILIEAALI-AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS 260 (381)
T ss_pred HHHHHcCCCCCCccccCCCCccHHHHHHHHh-ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe
Confidence 5566677778889999999999999998875 21 37799
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh-HhhChh-----cHHHHHHHHHhc
Q 047022 214 TLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI-EAVGHD-----YMEELFSCCESL 287 (381)
Q Consensus 214 Dis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l-~~~~~~-----~~~~~l~~~~~~ 287 (381)
|+++.+++.|+.++..+|+.+.|+|.++ |+..+.+ +.+.+|+|||+--. +-++.+ -+..+.+.+++.
T Consensus 261 Did~r~i~~Ak~NA~~AGv~d~I~f~~~-d~~~l~~------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 261 DIDPRHIEGAKANARAAGVGDLIEFKQA-DATDLKE------PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEc-chhhCCC------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999872 11789999996411 111111 244566667777
Q ss_pred cccCceEEEEcC
Q 047022 288 LAENGLSCSTVP 299 (381)
Q Consensus 288 LkpgG~~~i~~~ 299 (381)
++--+..++++.
T Consensus 334 ~~~ws~~v~tt~ 345 (381)
T COG0116 334 LAGWSRYVFTTS 345 (381)
T ss_pred hcCCceEEEEcc
Confidence 777777666654
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-05 Score=77.90 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=93.1
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc---CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT---GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
.....+..+||.+|||++++.|+=+.++++.. +..|+++|+++.-++..++++...|+. ++..... |...++..
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~-d~~~~~~~- 223 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNK-DARRLAEL- 223 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEec-cccccccc-
Confidence 44567888999999999999999999998872 456799999999999999999999987 5788888 77655411
Q ss_pred ccccCC-CcccEEEE------chhhHhhCh--------------hcHHHHHHHHHhccccCceEEEEcCCCCC
Q 047022 252 MTELFL-GNFSTVFI------CGMIEAVGH--------------DYMEELFSCCESLLAENGLSCSTVPDQCY 303 (381)
Q Consensus 252 l~~~~~-~~fD~Ivs------~~~l~~~~~--------------~~~~~~l~~~~~~LkpgG~~~i~~~~~~~ 303 (381)
... ++||.|+. .+++.-=|+ .-..+++....++|||||.++.+++.-..
T Consensus 224 ---~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 224 ---LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred ---ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 122 35999996 223311111 12447899999999999999888876443
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.3e-06 Score=76.05 Aligned_cols=99 Identities=12% Similarity=-0.070 Sum_probs=74.9
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEecCccccCcCCccccCCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA--GL-QDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~--gl-~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
.+...+||=||.|.|+.+.+++++. .+|+.+||++++++.+++.+... ++ .+|++++.. +.+. ..+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~--~~~~--------~~~ 138 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ--LLDL--------DIK 138 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh--hhhc--------cCC
Confidence 4556899999999999999999974 59999999999999999965432 22 235555532 2111 236
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+||+|++-.. ..+.+++.++++|+|||.++.-.
T Consensus 139 ~fDVIIvDs~-------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 139 KYDLIICLQE-------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCEEEEcCC-------CChHHHHHHHHhcCCCcEEEECC
Confidence 8999998632 23788899999999999987754
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.3e-06 Score=76.78 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHH-------HHcCC-CCCeEEEEe
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKV-------KEAGL-QDTSDYIFV 241 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~-------~~~gl-~~~i~~~~~ 241 (381)
..+..+++.+++.+++..+|||||.|....++|...+++ .+||++.+...+.|+... +..|. ..++++..+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 445678889999999999999999999999888776765 999999999887776533 22333 246778888
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
|+.+.+.. ...-...|+|++++... + ++....+.+....||||-+++.
T Consensus 109 -dfl~~~~~---~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 109 -DFLDPDFV---KDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp --TTTHHHH---HHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred -CccccHhH---hhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 77653200 00013479999987642 2 3456667777888888877543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.5e-06 Score=86.03 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=88.6
Q ss_pred HHHHHcCC-CCCCEEEEecCCchHHHHHHHHh-----c--------------------------------------CCEE
Q 047022 175 VLIEKVKL-VKGQEVLEIGCGWGTLAIEIVRQ-----T--------------------------------------GCKY 210 (381)
Q Consensus 175 ~l~~~l~~-~~~~~VLDiGcG~G~~~~~la~~-----~--------------------------------------~~~v 210 (381)
.++..... +++..++|.+||+|++++.+|.. + ..++
T Consensus 180 a~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i 259 (702)
T PRK11783 180 AILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKF 259 (702)
T ss_pred HHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceE
Confidence 45555555 56889999999999999988752 1 1369
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh-HhhCh-hcHHHHHHHHHhcc
Q 047022 211 TGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI-EAVGH-DYMEELFSCCESLL 288 (381)
Q Consensus 211 ~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l-~~~~~-~~~~~~l~~~~~~L 288 (381)
+|+|+++.+++.|++++..+|+.+.+++..+ |+.+++.. ...++||+|+++--. +.++. .+...+++.+.+.|
T Consensus 260 ~G~Did~~av~~A~~N~~~~g~~~~i~~~~~-D~~~~~~~----~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 260 YGSDIDPRVIQAARKNARRAGVAELITFEVK-DVADLKNP----LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCcceEEEeC-Chhhcccc----cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999 99887621 123579999997322 11221 23445555555555
Q ss_pred c---cCceEEEEcCCCC
Q 047022 289 A---ENGLSCSTVPDQC 302 (381)
Q Consensus 289 k---pgG~~~i~~~~~~ 302 (381)
| ||+..++.+++..
T Consensus 335 k~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 335 KQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHhCCCCeEEEEeCCHH
Confidence 4 8888776665543
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.27 E-value=9e-06 Score=73.00 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=80.9
Q ss_pred CCEEEEecCCchHHHHHHHH-hcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc-ccE
Q 047022 185 GQEVLEIGCGWGTLAIEIVR-QTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN-FST 262 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~-~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~-fD~ 262 (381)
+.+++|||+|.|-.++.+|- .++.+++-+|....-+.+.++...+.+++ +++++.+ .+++.. .... ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~-RaE~~~-------~~~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHG-RAEEFG-------QEKKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehh-hHhhcc-------cccccCcE
Confidence 58999999999999888773 37888999999999999999999999986 8999999 988886 2234 999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
|+|..+ .....+++-+..++|+||.++.
T Consensus 139 vtsRAv------a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 139 VTSRAV------ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEeehc------cchHHHHHHHHHhcccCCcchh
Confidence 999853 3457788889999999998543
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.7e-05 Score=64.66 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=77.4
Q ss_pred CCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
..-+||||||+|..+..+++. +++.+.++|++|..++...+.+..++. ++..+.. |...-- ..++.|+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~t-dl~~~l-------~~~~VDv 113 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRT-DLLSGL-------RNESVDV 113 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeeh-hHHhhh-------ccCCccE
Confidence 568999999999999999987 567899999999999998888887764 4777777 765432 3478888
Q ss_pred EEEchhh---------------HhhC----hhcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICGMI---------------EAVG----HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~~l---------------~~~~----~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++.+--. .+.+ .+-...++..+..+|.|.|.+++..
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 8764211 1111 1124577888889999999977654
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-05 Score=65.95 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=73.6
Q ss_pred CCCCEEEEecCCchHHHHHHHH-----hcCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEecCccccCcCCcccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVR-----QTGCKYTGITLSELQLKYAEIKVKEAG--LQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~-----~~~~~v~gvDis~~~~~~a~~~~~~~g--l~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
.+..+|+|+|||.|.++..++. .++.+|+++|.++..++.+.++....+ +..++++..+ +.....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~------- 95 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG-DIADES------- 95 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc-chhhhc-------
Confidence 5778999999999999999998 678999999999999999999988776 4456666666 554443
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.....++++..+.=-.+ -+..++.+.+ |+-..++.+|
T Consensus 96 ~~~~~~~~vgLHaCG~L----s~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 96 SSDPPDILVGLHACGDL----SDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred ccCCCeEEEEeecccch----HHHHHHHHHH---cCCCEEEEcC
Confidence 24667888876433222 3445555544 6655555544
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.6e-06 Score=69.65 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=67.2
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+-...+--.|.+++|+|||.|-++...+-.....|+|+||.|+.++.+++++.+..++ +++.++ |+.++.
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqc-dildle------ 109 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQC-DILDLE------ 109 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeee-eccchh------
Confidence 33344444468899999999999996655433457999999999999999999887764 799999 998876
Q ss_pred cCCCcccEEEEchhh
Q 047022 255 LFLGNFSTVFICGMI 269 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l 269 (381)
+..+.||.++.+--+
T Consensus 110 ~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 110 LKGGIFDTAVINPPF 124 (185)
T ss_pred ccCCeEeeEEecCCC
Confidence 345889999986543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.6e-05 Score=67.38 Aligned_cols=121 Identities=16% Similarity=0.127 Sum_probs=86.3
Q ss_pred HHHHHcCC--CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKL--VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~--~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...+.. -.|.++||+-+|+|.++++++.+....++.||.+...+...++++...++..+.++... |....-.. +
T Consensus 32 alFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~-da~~~L~~-~ 109 (187)
T COG0742 32 ALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN-DALRALKQ-L 109 (187)
T ss_pred HHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee-cHHHHHHh-c
Confidence 34444443 36899999999999999999998556899999999999999999999988888999999 87743100 0
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHH--HHhccccCceEEEEcCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSC--CESLLAENGLSCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~--~~~~LkpgG~~~i~~~~ 300 (381)
-..++||+|+.---++ .+.-+....+.. -..+|+|+|.+++....
T Consensus 110 --~~~~~FDlVflDPPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 110 --GTREPFDLVFLDPPYA-KGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred --CCCCcccEEEeCCCCc-cchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 0113599999864333 111111222333 44779999999987654
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.1e-06 Score=79.06 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+.....+++... .+..++|+|||.|... ...+.+.++|.|++...+..+++. | ......+ |+..++
T Consensus 33 Wp~v~qfl~~~~--~gsv~~d~gCGngky~---~~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~a-d~l~~p- 98 (293)
T KOG1331|consen 33 WPMVRQFLDSQP--TGSVGLDVGCGNGKYL---GVNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRA-DALKLP- 98 (293)
T ss_pred cHHHHHHHhccC--CcceeeecccCCcccC---cCCCcceeeecchhhhhccccccC----C---Cceeehh-hhhcCC-
Confidence 344556666654 5889999999998654 223678899999999888777654 1 1256667 888888
Q ss_pred CCccccCCCcccEEEEchhhHhhChhc-HHHHHHHHHhccccCceEEEE
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+...+||.++++.+++|+.... ...+++++.++|+|||...|.
T Consensus 99 -----~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 99 -----FREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred -----CCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 5678999999999999997543 567899999999999995543
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-05 Score=76.39 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=82.1
Q ss_pred CCEEEEecCCchHHHHHHHHhc-C-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQT-G-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~-~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
+.+|||+.||+|..++.++.+. | .+|+++|+++..++.++++++.+++. ++++..+ |+..+-. ....+||+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~-Da~~~l~-----~~~~~fDv 117 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNE-DAANVLR-----YRNRKFHV 117 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEch-hHHHHHH-----HhCCCCCE
Confidence 3589999999999999999872 4 58999999999999999999988775 6889999 8876641 12357999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|...- + + .+..++..+.+.+++||.+.++.
T Consensus 118 IdlDP-f---G--s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 118 IDIDP-F---G--TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EEeCC-C---C--CcHHHHHHHHHhcccCCEEEEEe
Confidence 98853 2 1 24678999999999999988874
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.3e-06 Score=78.13 Aligned_cols=125 Identities=15% Similarity=0.204 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEe
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--------TGCKYTGITLSELQLKYAEIKVKEAGLQDT-SDYIFV 241 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--------~~~~v~gvDis~~~~~~a~~~~~~~gl~~~-i~~~~~ 241 (381)
...+.+++.+...++.+|+|.+||+|.+...+.+. ....++|+|+++.++..|+-++.-.+.... ..+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 44456777777788889999999999999888763 467899999999999999888766555433 457777
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhh--C----------------hh-cHHHHHHHHHhccccCceEEEEcCC
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAV--G----------------HD-YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~--~----------------~~-~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|....+.. .....||+|+++--+... . .. .--.++..+.+.|++||++.+.+|+
T Consensus 113 -d~l~~~~~----~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 113 -DSLENDKF----IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp --TTTSHSC----TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred -cccccccc----ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 76544310 014789999996432211 0 00 1124789999999999997777665
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.5e-06 Score=74.16 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcC-CCCC--CEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc
Q 047022 170 IRKVSVLIEKVK-LVKG--QEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV 244 (381)
Q Consensus 170 ~~~~~~l~~~l~-~~~~--~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~ 244 (381)
.-|+..+.++.+ +.++ .+|||+||++|+++..+.++. ..+|+|+|+.+. ... ..+.+..+ |.
T Consensus 6 ~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~-d~ 72 (181)
T PF01728_consen 6 AFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQG-DI 72 (181)
T ss_dssp HHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTG-GG
T ss_pred HHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeec-cc
Confidence 356777788877 5554 899999999999999999874 479999999876 011 23455455 54
Q ss_pred cccCc-CCccc-cC--CCcccEEEEchhhHhhCh---------hcHHHHHHHHHhccccCceEEEEcC
Q 047022 245 NCLKP-TNMTE-LF--LGNFSTVFICGMIEAVGH---------DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 245 ~~l~~-~~l~~-~~--~~~fD~Ivs~~~l~~~~~---------~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.+... ..+.. +. .++||+|+|-.+....+. +-....+.-+.+.|+|||.+++...
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 33210 00111 11 268999999873322221 1233455666788999999777653
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.1e-05 Score=76.47 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=95.9
Q ss_pred CcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHH-HcC-CCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEc
Q 047022 138 SNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIE-KVK-LVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGIT 214 (381)
Q Consensus 138 ~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~-~l~-~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvD 214 (381)
-.+. +++++|...+||.- .+.+..+.++- .+. ++.-.+||-+|.|.|--+.++.+.++ .+++-+|
T Consensus 253 ~g~d-~rLYldG~LQfsTr-----------De~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVd 320 (508)
T COG4262 253 RGDD-LRLYLDGGLQFSTR-----------DEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVD 320 (508)
T ss_pred ecCc-eEEEEcCceeeeec-----------hhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEe
Confidence 3556 78888888888643 11222222221 111 23446899999999999999999874 5899999
Q ss_pred CCHHHHHHHHHHH--HH--cC-C-CCCeEEEEecCccccCcCCccccCCCcccEEEEch------hhHhhChhcHHHHHH
Q 047022 215 LSELQLKYAEIKV--KE--AG-L-QDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICG------MIEAVGHDYMEELFS 282 (381)
Q Consensus 215 is~~~~~~a~~~~--~~--~g-l-~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~------~l~~~~~~~~~~~l~ 282 (381)
++|.|++.+++.. .. .| + .+|+++... |+.+.-. -..+.||.||... ++..+ +-.++..
T Consensus 321 LDP~miela~~~~vlr~~N~~sf~dpRv~Vv~d-DAf~wlr-----~a~~~fD~vIVDl~DP~tps~~rl---YS~eFY~ 391 (508)
T COG4262 321 LDPRMIELASHATVLRALNQGSFSDPRVTVVND-DAFQWLR-----TAADMFDVVIVDLPDPSTPSIGRL---YSVEFYR 391 (508)
T ss_pred cCHHHHHHhhhhhHhhhhccCCccCCeeEEEec-cHHHHHH-----hhcccccEEEEeCCCCCCcchhhh---hhHHHHH
Confidence 9999999998432 21 11 1 357888888 8766531 1346899999752 22211 3357888
Q ss_pred HHHhccccCceEEEEcCC
Q 047022 283 CCESLLAENGLSCSTVPD 300 (381)
Q Consensus 283 ~~~~~LkpgG~~~i~~~~ 300 (381)
-+.+.|+++|.+++....
T Consensus 392 ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 392 LLSRHLAETGLMVVQAGS 409 (508)
T ss_pred HHHHhcCcCceEEEecCC
Confidence 999999999998876544
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.4e-05 Score=71.19 Aligned_cols=119 Identities=17% Similarity=0.087 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
+.+..+...+..-...+|||+|||+|..+..+.... -.+++++|.|+.|++.++................. ...+..
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~ 98 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRV-LYRDFL 98 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhh-hhcccc
Confidence 344444444433345699999999998766555442 34799999999999999887654321111111111 111111
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.....|+|++.++|..++......+++.+.+.+.+ .+++.-|
T Consensus 99 -------~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 99 -------PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred -------cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 12344999999999999876677788888777766 5555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.9e-05 Score=66.68 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=90.1
Q ss_pred HHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+.+.+++|.+||-+|+.+|+...+++.- +...|.+++.|+...+..-..++.. .||--+.. |++... ....+
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~-DAr~P~--~Y~~l 140 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILE-DARHPE--KYRML 140 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES--TTSGG--GGTTT
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeeeec-cCCChH--Hhhcc
Confidence 4567889999999999999999999876 4579999999996655444444333 57888888 887532 22112
Q ss_pred CCCcccEEEEchhhHhhC-hhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHH
Q 047022 256 FLGNFSTVFICGMIEAVG-HDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMT 334 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~ 334 (381)
-+.+|+|++. +. +++..-+..++...||+||.+++......-+........ ..+.++.+.
T Consensus 141 -v~~VDvI~~D-----VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~v-------------f~~e~~~L~ 201 (229)
T PF01269_consen 141 -VEMVDVIFQD-----VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEV-------------FAEEVKKLK 201 (229)
T ss_dssp -S--EEEEEEE------SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHH-------------HHHHHHHHH
T ss_pred -cccccEEEec-----CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHH-------------HHHHHHHHH
Confidence 3589999997 32 245667788899999999998877532211111111111 112235555
Q ss_pred hcCCcEEEEEEecch
Q 047022 335 SSSRLCVEHLENIET 349 (381)
Q Consensus 335 ~~~Gf~v~~~~~~~~ 349 (381)
+ .||++.+..++.+
T Consensus 202 ~-~~~~~~e~i~LeP 215 (229)
T PF01269_consen 202 E-EGFKPLEQITLEP 215 (229)
T ss_dssp C-TTCEEEEEEE-TT
T ss_pred H-cCCChheEeccCC
Confidence 3 6999988777654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.9e-05 Score=61.66 Aligned_cols=101 Identities=25% Similarity=0.291 Sum_probs=69.8
Q ss_pred EEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc--cCcCCccccCC-CcccE
Q 047022 188 VLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC--LKPTNMTELFL-GNFST 262 (381)
Q Consensus 188 VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~--l~~~~l~~~~~-~~fD~ 262 (381)
++|+|||.|... .++.... ..++++|+++.++..++......+.. .+.+... |... ++ +.. ..||+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~------~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVA-DALGGVLP------FEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEe-ccccCCCC------CCCCCceeE
Confidence 999999999976 3333322 48999999999999855544321111 1677777 7665 44 333 48999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+.+....++.. ....+.++.+.|+|+|.+++....
T Consensus 123 ~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 123 VISLLVLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred EeeeeehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 94444444442 688999999999999998776654
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.3e-05 Score=76.39 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
...++.+++.+...++ +|||+-||.|.+++.+|+. ..+|+|+|+++++++.|++++..+++. +++|..+ +..++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~-~~~~~ 256 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRG-DAEDF 256 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE---SHHC
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEe-eccch
Confidence 4556777888887766 8999999999999999985 779999999999999999999999985 8999988 77654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.3e-05 Score=71.27 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=85.4
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
.++|||||=+....+.- ..-..|+.||+++. .-.+.++ |+.+.|.+ ..+.++||+|++
T Consensus 53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns~----------------~~~I~qq-DFm~rplp---~~~~e~FdvIs~ 110 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGWFDVTRIDLNSQ----------------HPGILQQ-DFMERPLP---KNESEKFDVISL 110 (219)
T ss_pred ceEEeecccCCCCcccc--cCceeeEEeecCCC----------------CCCceee-ccccCCCC---CCcccceeEEEE
Confidence 69999999654433221 12346999999874 2345677 88877521 134689999999
Q ss_pred chhhHhhCh-hcHHHHHHHHHhccccCce-----EEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCc
Q 047022 266 CGMIEAVGH-DYMEELFSCCESLLAENGL-----SCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRL 339 (381)
Q Consensus 266 ~~~l~~~~~-~~~~~~l~~~~~~LkpgG~-----~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf 339 (381)
+.++..+|+ ...-+.++.+++.|+|+|. +++..|...... ....+...+ ..+.+..||
T Consensus 111 SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~N---------------SRy~~~~~l-~~im~~LGf 174 (219)
T PF11968_consen 111 SLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTN---------------SRYMTEERL-REIMESLGF 174 (219)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhc---------------ccccCHHHH-HHHHHhCCc
Confidence 999999984 3566899999999999999 999888754211 112233334 444456899
Q ss_pred EEEEEEec
Q 047022 340 CVEHLENI 347 (381)
Q Consensus 340 ~v~~~~~~ 347 (381)
..+..+..
T Consensus 175 ~~~~~~~~ 182 (219)
T PF11968_consen 175 TRVKYKKS 182 (219)
T ss_pred EEEEEEec
Confidence 98876543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.2e-05 Score=72.26 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=90.6
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.....+...++.+|||++++.|+-+.++++.. ...+++.|+++.-+...++++...|+. ++..... |.....+.
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~-D~~~~~~~-- 151 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINA-DARKLDPK-- 151 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEES-HHHHHHHH--
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEee-cccccccc--
Confidence 44556778899999999999999999999873 479999999999999999999999986 6777778 87766311
Q ss_pred cccCCCcccEEEE------chhhHhhCh--------------hcHHHHHHHHHhcc----ccCceEEEEcCC
Q 047022 253 TELFLGNFSTVFI------CGMIEAVGH--------------DYMEELFSCCESLL----AENGLSCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs------~~~l~~~~~--------------~~~~~~l~~~~~~L----kpgG~~~i~~~~ 300 (381)
.....||.|+. .+++..-++ .-..+.++.+.+.+ ||||+++.++..
T Consensus 152 --~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 152 --KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp --HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred --ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 12346999996 222222211 11346889999999 999998887754
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.1e-06 Score=74.08 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=72.6
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
..++||+|+|.|..+..++.. -.+|.++++|..|....+++ + -.+....++.+ .+-+||+|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~----ynVl~~~ew~~---------t~~k~dli~ 174 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N----YNVLTEIEWLQ---------TDVKLDLIL 174 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C----Cceeeehhhhh---------cCceeehHH
Confidence 469999999999999998874 44789999999998877664 2 22222112222 225799999
Q ss_pred EchhhHhhChhcHHHHHHHHHhcccc-CceEEE--EcCCCCCC
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAE-NGLSCS--TVPDQCYD 304 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~~~i--~~~~~~~~ 304 (381)
|.+.+... .++-.+++.++.+|+| +|++++ ..|-..|-
T Consensus 175 clNlLDRc--~~p~kLL~Di~~vl~psngrvivaLVLP~~hYV 215 (288)
T KOG3987|consen 175 CLNLLDRC--FDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYV 215 (288)
T ss_pred HHHHHHhh--cChHHHHHHHHHHhccCCCcEEEEEEeccccee
Confidence 99998866 4678999999999999 898554 34444443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00027 Score=63.43 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=67.4
Q ss_pred EEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCccccCCCcccEEEE
Q 047022 188 VLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 188 VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~~~~~fD~Ivs 265 (381)
|.||||--|.+.++++++. ..+++++|+++.-++.|++++...++.++|+++.+ |..+ ++ +.+..|.|+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlg-dGL~~l~-------~~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLG-DGLEVLK-------PGEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE--SGGGG---------GGG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEEC-CcccccC-------CCCCCCEEEE
Confidence 6899999999999999972 23799999999999999999999999999999999 8544 44 2233788888
Q ss_pred chhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 266 CGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 266 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.+|=.. -....++.....++..-.+++
T Consensus 73 AGMGG~----lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 73 AGMGGE----LIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp EEE-HH----HHHHHHHHTGGGGTT--EEEE
T ss_pred ecCCHH----HHHHHHHhhHHHhccCCeEEE
Confidence 765433 356667666666654444444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.2e-05 Score=69.55 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
.+..+.+++.+.+.++..|||||+|.|.++..+++. +.+++++|+++...+..+++.. ..++++++.+ |+.++..
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~-D~l~~~~ 90 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVING-DFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES--TTTSCG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeec-chhcccc
Confidence 455678999999889999999999999999999986 6899999999999999988765 2368999999 9988762
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHh
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCES 286 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~ 286 (381)
.. ........|+++--. ++ -..++.++..
T Consensus 91 ~~---~~~~~~~~vv~NlPy-~i----s~~il~~ll~ 119 (262)
T PF00398_consen 91 YD---LLKNQPLLVVGNLPY-NI----SSPILRKLLE 119 (262)
T ss_dssp GG---HCSSSEEEEEEEETG-TG----HHHHHHHHHH
T ss_pred HH---hhcCCceEEEEEecc-cc----hHHHHHHHhh
Confidence 10 001345677776332 22 2455555555
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.1e-05 Score=69.59 Aligned_cols=171 Identities=10% Similarity=0.053 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCC-CCCEEEEecCCc--hHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe
Q 047022 167 VGQIRKVSVLIEKVKLV-KGQEVLEIGCGW--GTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241 (381)
Q Consensus 167 ~aq~~~~~~l~~~l~~~-~~~~VLDiGcG~--G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~ 241 (381)
.+.+..+.+.++.+.-. .-...||||||- -....++|+. ++++|+-+|.+|-.+..++..+....- .+..++.+
T Consensus 50 r~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~a 128 (267)
T PF04672_consen 50 RANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQA 128 (267)
T ss_dssp HHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeC
Confidence 34455566666665444 235799999994 4456667766 889999999999999999988765421 23789999
Q ss_pred cCccccCc----CCccc-cCCCcccEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEEEEcCCCCCCCC--CCchhhh
Q 047022 242 ITVNCLKP----TNMTE-LFLGNFSTVFICGMIEAVGH-DYMEELFSCCESLLAENGLSCSTVPDQCYDEH--SLGPGFI 313 (381)
Q Consensus 242 ~d~~~l~~----~~l~~-~~~~~fD~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~--~~~~~~i 313 (381)
|.++... ..... +..++-=.++.+.+++|+++ +++..+++.+...|.||.+++|+......... ......+
T Consensus 129 -D~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~ 207 (267)
T PF04672_consen 129 -DLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVY 207 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHH
T ss_pred -CCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 9887420 00000 11122335778889999987 68999999999999999999998654432111 0111112
Q ss_pred hhhccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 047022 314 KEYIFPSGCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 314 ~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
.+- .....+.+.+++ ..+. .||++++
T Consensus 208 ~~~-~~~~~~Rs~~ei-~~~f--~g~elve 233 (267)
T PF04672_consen 208 AQA-GSPGRPRSREEI-AAFF--DGLELVE 233 (267)
T ss_dssp HHC-CS----B-HHHH-HHCC--TTSEE-T
T ss_pred HcC-CCCceecCHHHH-HHHc--CCCccCC
Confidence 211 112345566666 4554 3888753
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.8e-05 Score=65.43 Aligned_cols=126 Identities=17% Similarity=0.240 Sum_probs=86.4
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+.+.=..-.|.+|||+|+|+|-.++..++.....|+..|+.+......+-+++.+|+. |.+... |.-.-
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~-d~~g~-------- 139 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHA-DLIGS-------- 139 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeec-cccCC--------
Confidence 3333334468999999999999999998863347899999999888888888888864 777777 66542
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce-EEEEcCCCCCCCCCCchhhhhhhc
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL-SCSTVPDQCYDEHSLGPGFIKEYI 317 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~-~~i~~~~~~~~~~~~~~~~i~~yi 317 (381)
+..||+|+...++..- .....++. +.+.|+..|. +++..|.+.|-.. +...+...|-
T Consensus 140 -~~~~Dl~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~lpk-~~l~~~a~yq 197 (218)
T COG3897 140 -PPAFDLLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVLVGDPGRAYLPK-KRLEFLAIYQ 197 (218)
T ss_pred -CcceeEEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEEEeCCCCCCCch-hhhhhhhhcc
Confidence 3789999998876543 23355555 5666666666 6666665554332 2344444443
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00016 Score=63.94 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.++.+.+...-..+|.+||+||-|-|.....+-+++..+=..|+..|+.++..+...-. -.++|-+..+ -+++.-+
T Consensus 88 tpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g-~WeDvl~- 163 (271)
T KOG1709|consen 88 TPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEG-RWEDVLN- 163 (271)
T ss_pred hHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEec-chHhhhc-
Confidence 33333333333367889999999999988888776566677899999988777665321 1246777777 7766542
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.++++.||-|+---.-++. ++...+.+.+.++|||+|++-.
T Consensus 164 ---~L~d~~FDGI~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 164 ---TLPDKHFDGIYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred ---cccccCcceeEeechhhHH--HHHHHHHHHHhhhcCCCceEEE
Confidence 2567889999987655776 6788899999999999998544
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.2e-05 Score=66.84 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=78.4
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+.+.|+|+|+|.++..++.. ..+|++++.+|...+.|.+++.-.|. .+++++.+ |+++.. | ...|+|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~g-DA~~y~------f--e~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVG-DARDYD------F--ENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEec-cccccc------c--cccceeHH
Confidence 68999999999999988885 67999999999999999999766666 48999999 999887 3 56788877
Q ss_pred chhhH-hhChhcHHHHHHHHHhccccCceEE
Q 047022 266 CGMIE-AVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 266 ~~~l~-~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
- |+. .+-.+....+++.+.+.||-++.++
T Consensus 103 E-mlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 103 E-MLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred H-HhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 4 433 2333445678888888999998843
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00052 Score=60.28 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=97.3
Q ss_pred HHcCCCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
+.+.+++|++||=+|+.+|+...+++.-.+ ..+.+++.|+......-..+... .|+--+.. |++... ..+ .-
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~-DA~~P~--~Y~-~~ 142 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILE-DARKPE--KYR-HL 142 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeec-ccCCcH--Hhh-hh
Confidence 446688999999999999999999887633 68999999998776655555443 47878888 886532 111 12
Q ss_pred CCcccEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHh
Q 047022 257 LGNFSTVFICGMIEAVGH-DYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTS 335 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~ 335 (381)
-+..|+|++- +.. .+..-+..++...||+||.+++..-...-+........+ .+.++.+.+
T Consensus 143 Ve~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf-------------~~ev~kL~~ 204 (231)
T COG1889 143 VEKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVF-------------KDEVEKLEE 204 (231)
T ss_pred cccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHH-------------HHHHHHHHh
Confidence 2568999986 432 345667788999999999877765443322222111111 122355554
Q ss_pred cCCcEEEEEEecch
Q 047022 336 SSRLCVEHLENIET 349 (381)
Q Consensus 336 ~~Gf~v~~~~~~~~ 349 (381)
.+|++.+..++.+
T Consensus 205 -~~f~i~e~~~LeP 217 (231)
T COG1889 205 -GGFEILEVVDLEP 217 (231)
T ss_pred -cCceeeEEeccCC
Confidence 7899988776643
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=65.39 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 170 IRKVSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 170 ~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
..|+.+|.++.. ++++.+|+|+||.+|+++..+++..+ ..|+++|+.|- ....++.++++ |++.
T Consensus 30 a~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------~~~~~V~~iq~-d~~~ 96 (205)
T COG0293 30 AYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------KPIPGVIFLQG-DITD 96 (205)
T ss_pred HHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------ccCCCceEEee-eccC
Confidence 455667777765 46889999999999999999998844 45999999874 12235899999 8876
Q ss_pred cCcC-Cc-cccCCCcccEEEEchhh--------HhhChhc-HHHHHHHHHhccccCceEEEEc
Q 047022 247 LKPT-NM-TELFLGNFSTVFICGMI--------EAVGHDY-MEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 247 l~~~-~l-~~~~~~~fD~Ivs~~~l--------~~~~~~~-~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
-+.. .+ ..+....+|+|+|-.+- .|.-..+ ...+++-+..+|+|||.+++..
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 4311 11 11234557999985432 3321111 2356677788999999977754
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00024 Score=64.87 Aligned_cols=138 Identities=13% Similarity=0.182 Sum_probs=86.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++..+|+|||||.--++..+... ++..++|+||+..+++.........+.+ .++... |...-+ +....|
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~-Dl~~~~-------~~~~~D 173 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVR-DLLSDP-------PKEPAD 173 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE--TTTSH-------TTSEES
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEe-eeeccC-------CCCCcc
Confidence 35689999999999998877655 5689999999999999999998887754 777777 776554 447899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCV 341 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v 341 (381)
+.+..-+++-+........++-+..+=.| .++|+.|......- ..|+.++-++.++.+....|..+
T Consensus 174 laLllK~lp~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL~gR------------~~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 174 LALLLKTLPCLERQRRGAGLELLDALRSP--HVVVSFPTRSLGGR------------NKGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp EEEEET-HHHHHHHSTTHHHHHHHHSCES--EEEEEEES-------------------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred hhhHHHHHHHHHHHhcchHHHHHHHhCCC--eEEEeccccccccC------------ccccccCHHHHHHHhcccCCcee
Confidence 99998877777433333333333333222 37778876442211 11344455556677766667775
Q ss_pred EEE
Q 047022 342 EHL 344 (381)
Q Consensus 342 ~~~ 344 (381)
...
T Consensus 240 ~~~ 242 (251)
T PF07091_consen 240 DRL 242 (251)
T ss_dssp EEE
T ss_pred eee
Confidence 443
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00017 Score=67.37 Aligned_cols=105 Identities=20% Similarity=0.262 Sum_probs=66.3
Q ss_pred CEEEEecCCchHHH-HHHHHh--cCCEEEEEcCCHHHHHHHHHHHH-HcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 186 QEVLEIGCGWGTLA-IEIVRQ--TGCKYTGITLSELQLKYAEIKVK-EAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 186 ~~VLDiGcG~G~~~-~~la~~--~~~~v~gvDis~~~~~~a~~~~~-~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+|+=||||.=.++ +.++++ .+..|+++|++++..+.+++.+. ..++..+++|+.+ |..+.+ .....||
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~-d~~~~~------~dl~~~D 194 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITA-DVLDVT------YDLKEYD 194 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES--GGGG-------GG----S
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEec-chhccc------cccccCC
Confidence 59999999975555 445544 36789999999999999999887 5677789999999 987765 2336899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|+...... +..++..++++.+.+.++||..+++-.
T Consensus 195 vV~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 195 VVFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 998865544 222467899999999999999877753
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00021 Score=64.45 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=83.6
Q ss_pred HHHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIEKVKLV-KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
-|+...++...+. ++..+||||+.||+++..+.++...+|+++|....|+..--+. .+++.....+|++.+.+
T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~ 138 (245)
T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTP 138 (245)
T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCH
Confidence 4555666666654 6789999999999999999997345899999999887754332 24666555448888875
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+. ..+..|+|+|--++-.+ ...+..+..+++|+|.++.-+
T Consensus 139 ~~----~~~~~d~~v~DvSFISL-----~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 139 ED----FTEKPDLIVIDVSFISL-----KLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred HH----cccCCCeEEEEeehhhH-----HHHHHHHHHhcCCCceEEEEe
Confidence 43 22478999998666544 788999999999999855443
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=61.49 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=94.9
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCC--CCeEEEEecCccccCcC
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQ--DTSDYIFVITVNCLKPT 250 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~--~~i~~~~~~d~~~l~~~ 250 (381)
.+++..+.-.|.+|||+|.|- |-.++.+|.+ +...|..+|-+++.++..++....+-.. +++..... +...-..
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw-~~~~aqs- 97 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRW-LIWGAQS- 97 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHH-HHhhhHH-
Confidence 334443334578999999995 5555566655 6678999999999998888766543221 12222222 1111110
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHH
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVT 330 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~ 330 (381)
......||.|++..++..- +....+.+.+.++|+|.|..++..|.+. -++..+.
T Consensus 98 ---q~eq~tFDiIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg---------------------~sL~kF~ 151 (201)
T KOG3201|consen 98 ---QQEQHTFDIILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSPRRG---------------------QSLQKFL 151 (201)
T ss_pred ---HHhhCcccEEEeccchhHH--HHHHHHHHHHHHHhCcccceeEecCccc---------------------chHHHHH
Confidence 0123589999998877543 5568899999999999999666655432 1233344
Q ss_pred HHHHhcCCcEEEEEEecchhHHHHHHHHHHHH
Q 047022 331 SAMTSSSRLCVEHLENIETHYYQKLRRWRQKF 362 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f 362 (381)
.... ..||.+.-.+ +|..++..-..++
T Consensus 152 de~~-~~gf~v~l~e----nyde~iwqrh~~L 178 (201)
T KOG3201|consen 152 DEVG-TVGFTVCLEE----NYDEAIWQRHGRL 178 (201)
T ss_pred HHHH-hceeEEEecc----cHhHHHHHHHHHH
Confidence 4444 4799986554 4444444433333
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0003 Score=72.39 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=54.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhc---------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQT---------GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~---------~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
...+|||.|||+|.+...++.+. ...++|+|+++..+..++.++...+. ..+.+... |....... ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~-d~l~~~~~-~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINF-NSLSYVLL-NIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeec-cccccccc-ccc
Confidence 34699999999999999888652 14789999999999999998876541 13455555 43321100 000
Q ss_pred cCCCcccEEEEch
Q 047022 255 LFLGNFSTVFICG 267 (381)
Q Consensus 255 ~~~~~fD~Ivs~~ 267 (381)
...+.||+|+++-
T Consensus 108 ~~~~~fD~IIgNP 120 (524)
T TIGR02987 108 SYLDLFDIVITNP 120 (524)
T ss_pred cccCcccEEEeCC
Confidence 1236899999854
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00025 Score=67.65 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=69.7
Q ss_pred HHHHHHHHcC--------CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecC
Q 047022 172 KVSVLIEKVK--------LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT 243 (381)
Q Consensus 172 ~~~~l~~~l~--------~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d 243 (381)
|+..++.... +.+|.++|||||++|+++..++++ |.+|++||..+ +.. .+.. .++|+.... |
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~----~L~~---~~~V~h~~~-d 260 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQ----SLMD---TGQVEHLRA-D 260 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCH----hhhC---CCCEEEEec-c
Confidence 4555555443 358999999999999999999996 88999999654 222 1211 247888888 6
Q ss_pred ccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC
Q 047022 244 VNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN 291 (381)
Q Consensus 244 ~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg 291 (381)
.....+ ..+.+|.++|--+ ..+....+-+.+.|..|
T Consensus 261 ~fr~~p------~~~~vDwvVcDmv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 261 GFKFRP------PRKNVDWLVCDMV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred CcccCC------CCCCCCEEEEecc------cCHHHHHHHHHHHHhcC
Confidence 544432 2478999999732 35678888888888776
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0002 Score=60.16 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=49.5
Q ss_pred EEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 187 EVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
++||||||.|..+..+++. ++.+++++|+++.+.+.+++++..+++. ++++... ...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~-al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNA-AVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEe-eeeC
Confidence 4899999999999999887 4458999999999999999999888775 5888877 5544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.9e-05 Score=63.25 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=45.4
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCC
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYD 304 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~ 304 (381)
|.+++.|+|.+..++||+.-+.-..++++|++.|||||++-+++|+..+.
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 67799999999999999987778899999999999999999999986653
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.58 E-value=9.8e-05 Score=73.23 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=75.3
Q ss_pred cccccCCCCceeeccc-CCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHH
Q 047022 143 FFLFLDKSMTYSCAIF-KSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLK 221 (381)
Q Consensus 143 y~~~l~~~~~ys~~~~-~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~ 221 (381)
++..++-+...|++-| .... .+....+..+-+.+.++.+..+||+.||+|.+++.+++. -.+|+|++++++.++
T Consensus 345 ~E~l~~ltF~iSp~AFFQ~Nt----~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 345 TESLLGLTFRISPGAFFQTNT----SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVE 419 (534)
T ss_pred EeecCCeEEEECCchhhccCc----HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcc
Confidence 5555555555554333 2221 122233445667788889999999999999999999985 679999999999999
Q ss_pred HHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 222 YAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 222 ~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.|+.++..+|+. +.+|+++ -++++-
T Consensus 420 dA~~nA~~Ngis-Na~Fi~g-qaE~~~ 444 (534)
T KOG2187|consen 420 DAEKNAQINGIS-NATFIVG-QAEDLF 444 (534)
T ss_pred hhhhcchhcCcc-ceeeeec-chhhcc
Confidence 999999999997 8999999 777764
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00029 Score=64.49 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=73.8
Q ss_pred HHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc------C--CCCCeEEEEecC
Q 047022 174 SVLIEKVKLVKGQ--EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA------G--LQDTSDYIFVIT 243 (381)
Q Consensus 174 ~~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~------g--l~~~i~~~~~~d 243 (381)
+.+++.+.+++|. +|||+-+|+|..++.++.. |++|+++|-++......++.+... + +..+++++.+ |
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~-d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA-S 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC-c
Confidence 5788888889988 9999999999999999996 999999999999999888887764 2 2247888888 8
Q ss_pred ccccCcCCccccCCCcccEEEEchhhHhh
Q 047022 244 VNCLKPTNMTELFLGNFSTVFICGMIEAV 272 (381)
Q Consensus 244 ~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~ 272 (381)
..+.-.. ...+||+|+.--|+.|-
T Consensus 154 a~~~L~~-----~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 154 SLTALTD-----ITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHHhh-----CCCCCcEEEECCCCCCC
Confidence 7665311 22479999987777663
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.54 E-value=2.5e-05 Score=62.32 Aligned_cols=100 Identities=22% Similarity=0.168 Sum_probs=44.7
Q ss_pred EEecCCchHHHHHHHHh--cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 189 LEIGCGWGTLAIEIVRQ--TG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 189 LDiGcG~G~~~~~la~~--~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
||||+..|..+..+++. .+ .+++++|..+. .+.+++.+++.++.+++++..+ +..+.-+ .+..++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g-~s~~~l~----~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQG-DSPDFLP----SLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES--THHHHH----HHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEc-CcHHHHH----HcCCCCEEEEE
Confidence 69999999888887764 22 37999999985 3344455555677778999999 8765421 13347899999
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.-..-.. +.....++.+.+.|+|||.+++.
T Consensus 75 iDg~H~~---~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 75 IDGDHSY---EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EES---H---HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ECCCCCH---HHHHHHHHHHHHHcCCCeEEEEe
Confidence 8753111 23467788999999999998764
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00044 Score=65.54 Aligned_cols=92 Identities=12% Similarity=0.208 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.++.+++.+.++++..++|.-||.|+.+..+++. ++++|+|+|.++.+++.+++++... .++++++.+ ++.++..
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~-nF~~l~~- 83 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHD-NFANFFE- 83 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeC-CHHHHHH-
Confidence 3567788888889999999999999999999987 3589999999999999999988653 358999999 9887641
Q ss_pred CccccCCCcccEEEEch
Q 047022 251 NMTELFLGNFSTVFICG 267 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~ 267 (381)
.+......++|.|+...
T Consensus 84 ~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 84 HLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHhcCCCcccEEEEec
Confidence 11112335799988753
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0015 Score=58.38 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=80.7
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+..+.+.+. .+.++.||||--+.+.+++.+. ....+++.|+++.-++.|.+++...++.++++...+ |....-
T Consensus 7 L~~va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~-dgl~~l--- 80 (226)
T COG2384 7 LTTVANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLG-DGLAVL--- 80 (226)
T ss_pred HHHHHHHHH--cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEecc-CCcccc---
Confidence 444555543 5667999999999999999987 456899999999999999999999999999999999 873322
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhcccc
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAE 290 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkp 290 (381)
..++.+|.|+..+|=... ....+++-.+.|+.
T Consensus 81 ---~~~d~~d~ivIAGMGG~l----I~~ILee~~~~l~~ 112 (226)
T COG2384 81 ---ELEDEIDVIVIAGMGGTL----IREILEEGKEKLKG 112 (226)
T ss_pred ---CccCCcCEEEEeCCcHHH----HHHHHHHhhhhhcC
Confidence 134589999988764433 45666666665553
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.026 Score=51.40 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=64.3
Q ss_pred CCCCEEEEecCCchHHHHHHHH-hcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVR-QTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~-~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
-.|.+||-+|=..- .++.++. ....+|+.+|+++..+++.++.++..|++ |+.... |.++.-|+. ..++||
T Consensus 43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~-DlR~~LP~~----~~~~fD 114 (243)
T PF01861_consen 43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHY-DLRDPLPEE----LRGKFD 114 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE----TTS---TT----TSS-BS
T ss_pred ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEe-cccccCCHH----HhcCCC
Confidence 35789999996653 2333333 25779999999999999999999999986 999999 998764332 348999
Q ss_pred EEEEc--hhhHhhChhcHHHHHHHHHhccccCc-eEEEEc
Q 047022 262 TVFIC--GMIEAVGHDYMEELFSCCESLLAENG-LSCSTV 298 (381)
Q Consensus 262 ~Ivs~--~~l~~~~~~~~~~~l~~~~~~LkpgG-~~~i~~ 298 (381)
++++. +.++ ...-++.+....||..| ..+++.
T Consensus 115 ~f~TDPPyT~~-----G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 115 VFFTDPPYTPE-----GLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp EEEE---SSHH-----HHHHHHHHHHHTB-STT-EEEEEE
T ss_pred EEEeCCCCCHH-----HHHHHHHHHHHHhCCCCceEEEEE
Confidence 99995 2333 34788999999998777 455554
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=9.9e-05 Score=65.50 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=72.8
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
....|+|.-||.|+.++..+.+ ++.|+++|++|.-+..|+.+++-.|++++|+|+++ |+.++-.. + .+....+|+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G-D~ld~~~~-l-q~~K~~~~~v 169 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICG-DFLDLASK-L-KADKIKYDCV 169 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEec-hHHHHHHH-H-hhhhheeeee
Confidence 3458999999999999999885 99999999999999999999999999999999999 99876411 0 0112234455
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCce
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGL 293 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 293 (381)
+-+.-. -++.....-+-.+...+.|.|.
T Consensus 170 f~sppw--ggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 170 FLSPPW--GGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred ecCCCC--CCcchhhhhhhhhhhhcchhHH
Confidence 543211 1122333334445556666654
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0022 Score=60.52 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=50.9
Q ss_pred CCEEEEecCCch-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEecCcc-ccCcCCccccCCCccc
Q 047022 185 GQEVLEIGCGWG-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-GLQDTSDYIFVITVN-CLKPTNMTELFLGNFS 261 (381)
Q Consensus 185 ~~~VLDiGcG~G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-gl~~~i~~~~~~d~~-~l~~~~l~~~~~~~fD 261 (381)
..++||||||.. ...+..++.++.+++|+|+++..++.|++++..+ ++.++|+++.. .-. .+- ..+ ....+.||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~-~~~~~i~-~~i-~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQ-KNPDNIF-DGI-IQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE---ST-SST-TTS-TT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEc-CCccccc-hhh-hcccceee
Confidence 458999999975 4444445558999999999999999999999999 99999999876 322 221 000 01336899
Q ss_pred EEEEchhhHhh
Q 047022 262 TVFICGMIEAV 272 (381)
Q Consensus 262 ~Ivs~~~l~~~ 272 (381)
+.+|+--++.-
T Consensus 180 ftmCNPPFy~s 190 (299)
T PF05971_consen 180 FTMCNPPFYSS 190 (299)
T ss_dssp EEEE-----SS
T ss_pred EEecCCccccC
Confidence 99998666544
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=63.02 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=70.6
Q ss_pred HHHcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 177 IEKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
++..+++||++|+-+|+| .|.++.++|+..+++|+++|.|++-.+.|++.-. -.++...|-.... .
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~-----~- 225 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALE-----A- 225 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhH-----H-
Confidence 455678899999999997 4789999999889999999999999998887632 2223220111111 0
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
-.+.||+|+..-. ...+....+.|++||++++..
T Consensus 226 ~~~~~d~ii~tv~---------~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 226 VKEIADAIIDTVG---------PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred hHhhCcEEEECCC---------hhhHHHHHHHHhcCCEEEEEC
Confidence 1134999998722 445667788999999966543
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0057 Score=57.35 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=89.3
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-------------------------------
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ------------------------------- 233 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~------------------------------- 233 (381)
.-+||--|||.|.++..++.. |..+-|-+.|--|+-...=.+..-..+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 458999999999999999984 777777788776653222111000001
Q ss_pred --------CCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCC
Q 047022 234 --------DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDE 305 (381)
Q Consensus 234 --------~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~ 305 (381)
+....-.+ |+.+.-++. -..+.||+|+.++.+... .|.-++++.+..+|||||+.+=..| -.|..
T Consensus 230 p~~~~~~~~~fsicaG-DF~evy~~s---~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGP-LlYHF 302 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAG-DFLEVYGTS---SGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGP-LLYHF 302 (369)
T ss_pred ccccCCCCCCcccccc-ceeEEecCc---CCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccc-eeeec
Confidence 11111223 333332110 122579999998766655 6789999999999999998442222 11111
Q ss_pred CCCchhhhhhhccC-CCCCCCHHHHHHHHHhcCCcEEEEEEecchhHH
Q 047022 306 HSLGPGFIKEYIFP-SGCLPSLRRVTSAMTSSSRLCVEHLENIETHYY 352 (381)
Q Consensus 306 ~~~~~~~i~~yi~p-gg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~ 352 (381)
... ... .+ .+.-++.+++.. +.+..||++++.+.+...|.
T Consensus 303 ~d~-~g~-----~~~~siEls~edl~~-v~~~~GF~~~ke~~Idt~Y~ 343 (369)
T KOG2798|consen 303 EDT-HGV-----ENEMSIELSLEDLKR-VASHRGFEVEKERGIDTTYG 343 (369)
T ss_pred cCC-CCC-----cccccccccHHHHHH-HHHhcCcEEEEeeeeecccC
Confidence 000 000 00 023356667644 44568999998887766664
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0007 Score=56.56 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=59.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhCh---------hcHHH
Q 047022 209 KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH---------DYMEE 279 (381)
Q Consensus 209 ~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~---------~~~~~ 279 (381)
+|.++||.++.++..++++.+.++.++++++.. .-+.+.. ..+.+++|+|+.+. -++|. +....
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~-sHe~l~~----~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILD-SHENLDE----YIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES--GGGGGG----T--S--EEEEEEEE--SB-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEEC-CHHHHHh----hCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHH
Confidence 589999999999999999999999889999998 7776651 11224899988763 23332 23457
Q ss_pred HHHHHHhccccCceEEEEc
Q 047022 280 LFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 280 ~l~~~~~~LkpgG~~~i~~ 298 (381)
.++.+.++|+|||.+.+..
T Consensus 74 Al~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhhccCCEEEEEE
Confidence 8899999999999987765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0031 Score=61.31 Aligned_cols=118 Identities=15% Similarity=0.171 Sum_probs=86.2
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
...+.++||.||||..|..|+=+.++|.- -...|++.|.+.+-++..++++...|+. +.-+... |..+++.. .
T Consensus 234 v~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~-D~~ef~~~---~ 308 (460)
T KOG1122|consen 234 VMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNY-DGREFPEK---E 308 (460)
T ss_pred eeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEcc-Cccccccc---c
Confidence 34466789999999999999888887765 2358999999999999999999999975 5555566 66665421 1
Q ss_pred cCCCcccEEEE----ch--hh----------------HhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 255 LFLGNFSTVFI----CG--MI----------------EAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 255 ~~~~~fD~Ivs----~~--~l----------------~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
++ ++||.|+. ++ ++ .+. .-..++|.....+++|||+++.++..-.
T Consensus 309 ~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~--~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 309 FP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYA--HLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred cC-cccceeeecCCCCCCcccccccccccchhHHHHHHhH--HHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 33 48999984 32 11 111 1245788889999999999988876544
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=64.77 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=82.2
Q ss_pred CCCC-EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQ-EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~-~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.. ++|.+|||.-.++..+-+..-..|+.+|+|+..++....+-.. -..-+.+... |...+. |++.+||
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~-d~~~l~------fedESFd 116 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEM-DMDQLV------FEDESFD 116 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc--CCcceEEEEe-cchhcc------CCCccee
Confidence 3555 9999999999999888775334799999999888877665432 1235788888 998887 7889999
Q ss_pred EEEEchhhHhhChh--------cHHHHHHHHHhccccCce-EEEEc
Q 047022 262 TVFICGMIEAVGHD--------YMEELFSCCESLLAENGL-SCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~--------~~~~~l~~~~~~LkpgG~-~~i~~ 298 (381)
+|+..+.+.++-.. .....+.+++++|+|||+ +.++.
T Consensus 117 iVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 117 IVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred EEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99999988877422 134568899999999999 34444
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0037 Score=54.67 Aligned_cols=114 Identities=12% Similarity=0.028 Sum_probs=66.3
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHH------HHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLK------YAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~------~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
++....++||++|+|+=.|.|.++..++... ...|++.-..+...- ..+....+. ...+++.+.. +...+
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~~-~~~A~ 117 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIGK-PLVAL 117 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhCC-ccccc
Confidence 4555668999999999999999999998763 346666554433110 011111111 1124444444 33333
Q ss_pred CcCCccccCCCcccEEEEchhhH--h---hChhcHHHHHHHHHhccccCceEEEEc
Q 047022 248 KPTNMTELFLGNFSTVFICGMIE--A---VGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~--~---~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
. ..+..|++.....-+ | +.......+.+.+++.|||||.+.+..
T Consensus 118 ~-------~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 118 G-------APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred C-------CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 3 224555555422111 1 113457789999999999999977653
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0038 Score=52.12 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+.++.++..+.-.+..+.+|+|+|.|......++. | ...+|+++++-.+.+++-+.-..|+..+..|... |..+.+
T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rk-dlwK~d- 135 (199)
T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRK-DLWKVD- 135 (199)
T ss_pred HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhh-hhhhcc-
Confidence 44556677777677679999999999999999886 5 5789999999999999999888899888999988 887765
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+ ..|.-|+..++=.-+ ..+-.++..-+..|..++..
T Consensus 136 -----l--~dy~~vviFgaes~m-----~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 136 -----L--RDYRNVVIFGAESVM-----PDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred -----c--cccceEEEeehHHHH-----hhhHHHHHhhCcCCCeEEEE
Confidence 2 345545444322222 33334455556666665544
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0016 Score=57.31 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=71.6
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC------CCCCeEEEEecCccccCcCCccccC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAG------LQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~g------l~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
....+.|||||-|++...++.. ++.-+.|.+|-...-++.++++.... ...++.+... +....-|. .|.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~-namk~lpn---~f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRT-NAMKFLPN---FFE 135 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeec-cchhhccc---hhh
Confidence 3357899999999999999987 77789999999999999999887654 1234555555 44332211 122
Q ss_pred CCcccEEEEchhhHhhChh------cHHHHHHHHHhccccCceEEEEc
Q 047022 257 LGNFSTVFICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.++.+..+...-=.|+-.. -...++.+..-+|++||.++..+
T Consensus 136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 3344444433222222110 12357788889999999977654
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.02 Score=56.10 Aligned_cols=156 Identities=11% Similarity=0.108 Sum_probs=88.6
Q ss_pred CCEEEEecCCchHHHHHHHHh----------------cCCEEEEEcCCHHHHHHHHHHHHH---------cCC---CCCe
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ----------------TGCKYTGITLSELQLKYAEIKVKE---------AGL---QDTS 236 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~----------------~~~~v~gvDis~~~~~~a~~~~~~---------~gl---~~~i 236 (381)
..+|+|+|||+|..++.+... +..+|..-|+..+-....-+.+.. ..+ ..+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 458999999999877665321 124666677654433332222211 000 0011
Q ss_pred EEEE---ecCccccCcCCccccCCCcccEEEEchhhHhhCh------------------------------------hcH
Q 047022 237 DYIF---VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH------------------------------------DYM 277 (381)
Q Consensus 237 ~~~~---~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~------------------------------------~~~ 277 (381)
-|.. + .+..-- |+.++.++++|..++|++.. +|+
T Consensus 144 ~f~~gvpG-SFY~RL------fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~ 216 (386)
T PLN02668 144 YFAAGVPG-SFYRRL------FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADL 216 (386)
T ss_pred eEEEecCc-cccccc------cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHH
Confidence 1222 2 222211 56789999999999888752 023
Q ss_pred HHHHHHHHhccccCceEEEEcCCCCCCCCC-C---chhh---------------------hhhhccCCCCCCCHHHHHHH
Q 047022 278 EELFSCCESLLAENGLSCSTVPDQCYDEHS-L---GPGF---------------------IKEYIFPSGCLPSLRRVTSA 332 (381)
Q Consensus 278 ~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~-~---~~~~---------------------i~~yi~pgg~lp~~~~~~~~ 332 (381)
..+|+.=.+-|+|||+++++....+..... . ...| +..+..|- +.|+.+|+.+.
T Consensus 217 ~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~-Y~ps~eEv~~~ 295 (386)
T PLN02668 217 AGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPV-YAPSLQDFKEV 295 (386)
T ss_pred HHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcc-cCCCHHHHHHH
Confidence 455666677899999988776543321111 0 0001 11222342 57999999888
Q ss_pred HHhcCCcEEEEEEecc
Q 047022 333 MTSSSRLCVEHLENIE 348 (381)
Q Consensus 333 l~~~~Gf~v~~~~~~~ 348 (381)
++++.-|.+.+++.+.
T Consensus 296 Ie~~gsF~I~~le~~~ 311 (386)
T PLN02668 296 VEANGSFAIDKLEVFK 311 (386)
T ss_pred HhhcCCEEeeeeEEee
Confidence 8877778888777544
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=55.86 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=73.7
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe-----cCcccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV-----ITVNCL 247 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~-----~d~~~l 247 (381)
+.++...+++|.+||-+|+|+ |-.+...|+..|+ +|+.+|++++-++.|++ + |.. ...... .++.+.
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~--~~~~~~~~~~~~~~~~~ 233 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT--VTDPSSHKSSPQELAEL 233 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe--EEeeccccccHHHHHHH
Confidence 557788899999999999997 7777777877665 89999999999999998 3 322 111111 011111
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
-. .......+|+.+.... .+..++.....+|+||.+++....
T Consensus 234 v~---~~~g~~~~d~~~dCsG--------~~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 234 VE---KALGKKQPDVTFDCSG--------AEVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred HH---hhccccCCCeEEEccC--------chHHHHHHHHHhccCCEEEEeccC
Confidence 00 0122345899888733 345566778899999996665433
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.011 Score=60.14 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT-----GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~-----~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
.....+++.+.+.+..+|+|..||+|++.....+.. ...+.|.++++.....|+.++--.|+...+....+ |..
T Consensus 173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~-dtl 251 (489)
T COG0286 173 EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG-DTL 251 (489)
T ss_pred HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc-ccc
Confidence 445567777777788899999999999998887662 26799999999999999999988887643455555 433
Q ss_pred ccCcCCccccCCCcccEEEEchhhH---hhC--------------------hhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIE---AVG--------------------HDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~---~~~--------------------~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
.-+.. ......+.||.|+++--+. +.+ ......+++.+...|+|||+..|..|+..
T Consensus 252 ~~~~~-~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gv 330 (489)
T COG0286 252 SNPKH-DDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGV 330 (489)
T ss_pred cCCcc-cccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCc
Confidence 32210 0011336799999854331 110 01125789999999999998776666543
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0085 Score=58.04 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=67.0
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
+......++++||-+|||. |.++..+++..|+ +|+++|.+++.++.+++. |...-+..... +..+..
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~-~~~~~~------ 230 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQND-DLDHYK------ 230 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcc-cHHHHh------
Confidence 3445556889999999975 8888888888787 699999999988877653 32210111111 222211
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+.+|+|+.. ++. ...++.+.++|++||+++..
T Consensus 231 ~~~g~~D~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 231 AEKGYFDVSFEV-----SGH---PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ccCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 012459999876 442 34667788899999996654
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0026 Score=61.98 Aligned_cols=102 Identities=21% Similarity=0.177 Sum_probs=70.7
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
..|||||.|+|.++..+++..+-.|++++.-..|.+.|++....+|..++|+++.. .-.++. -.+....|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk-rStev~-----vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK-RSTEVK-----VGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc-ccceee-----ecCcchhhhhhH
Confidence 36899999999999999887445899999999999999999999999999999887 655554 111234666554
Q ss_pred chh-hHhhChhcHHHHHHHHHhccccCce
Q 047022 266 CGM-IEAVGHDYMEELFSCCESLLAENGL 293 (381)
Q Consensus 266 ~~~-l~~~~~~~~~~~l~~~~~~LkpgG~ 293 (381)
-.. -|-++...++.+=.....+++||-.
T Consensus 142 e~fdtEligeGalps~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 142 EDFDTELIGEGALPSLQHAHDMLLVDNCK 170 (636)
T ss_pred hhhhhhhhccccchhHHHHHHHhcccCCe
Confidence 322 1223322233333334455566655
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.036 Score=53.65 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=81.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-----------cC------CEEEEEcCCHHHHHHHHHHHHHcC----CCCCeE--E
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-----------TG------CKYTGITLSELQLKYAEIKVKEAG----LQDTSD--Y 238 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-----------~~------~~v~gvDis~~~~~~a~~~~~~~g----l~~~i~--~ 238 (381)
....-+|+|+||..|..++.+... .+ .+|.--|+-.+=....-+.+.... -..++- .
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 345569999999999988877543 11 367777775443332222221110 011232 2
Q ss_pred EEecCccccCcCCccccCCCcccEEEEchhhHhhCh-------------------------------------hcHHHHH
Q 047022 239 IFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH-------------------------------------DYMEELF 281 (381)
Q Consensus 239 ~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~-------------------------------------~~~~~~l 281 (381)
+.+ .+..-- ++.++.|+++|..++|++.. +|+..+|
T Consensus 94 vpg-SFy~rL------fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL 166 (334)
T PF03492_consen 94 VPG-SFYGRL------FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL 166 (334)
T ss_dssp EES--TTS--------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred cCc-hhhhcc------CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 334 443322 56799999999998887752 1233455
Q ss_pred HHHHhccccCceEEEEcCCCCCCCCC-----Cchhhh------------------hhhccCCCCCCCHHHHHHHHHhcCC
Q 047022 282 SCCESLLAENGLSCSTVPDQCYDEHS-----LGPGFI------------------KEYIFPSGCLPSLRRVTSAMTSSSR 338 (381)
Q Consensus 282 ~~~~~~LkpgG~~~i~~~~~~~~~~~-----~~~~~i------------------~~yi~pgg~lp~~~~~~~~l~~~~G 338 (381)
+.=.+-|+|||+++++.......... ...+.+ ..+..|- +.|+.+|+.+.+.++..
T Consensus 167 ~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~-Y~ps~eEv~~~I~~~gs 245 (334)
T PF03492_consen 167 KARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPI-YFPSPEEVRAIIEEEGS 245 (334)
T ss_dssp HHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SB-B---HHHHHHHHHHHTS
T ss_pred HHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCc-cCCCHHHHHHHHhcCCC
Confidence 56667789999977765443321111 011111 1112232 57899999888888778
Q ss_pred cEEEEEEecc
Q 047022 339 LCVEHLENIE 348 (381)
Q Consensus 339 f~v~~~~~~~ 348 (381)
|++..++.+.
T Consensus 246 F~I~~le~~~ 255 (334)
T PF03492_consen 246 FEIEKLELFE 255 (334)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEe
Confidence 9887766554
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0052 Score=55.95 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=56.0
Q ss_pred HHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHH---HHHHcCC-----CCCeEEEEecC
Q 047022 174 SVLIEKVKLVKGQ--EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEI---KVKEAGL-----QDTSDYIFVIT 243 (381)
Q Consensus 174 ~~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~---~~~~~gl-----~~~i~~~~~~d 243 (381)
+.+++.+.++++. +|||.-||.|.-++.++. .|++|++++-||-+....+. +.....- ..+|+++.+ |
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~-d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG-D 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES--
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC-C
Confidence 3677788888774 999999999999999987 59999999999987665553 3222111 137899999 8
Q ss_pred ccccCcCCccccCCCcccEEEEchhhHhh
Q 047022 244 VNCLKPTNMTELFLGNFSTVFICGMIEAV 272 (381)
Q Consensus 244 ~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~ 272 (381)
..+.-. .++.+||+|..--|+.+-
T Consensus 141 ~~~~L~-----~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 141 ALEYLR-----QPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CCCHCC-----CHSS--SEEEE--S----
T ss_pred HHHHHh-----hcCCCCCEEEECCCCCCc
Confidence 877531 245899999999888773
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.016 Score=55.71 Aligned_cols=121 Identities=10% Similarity=0.049 Sum_probs=78.2
Q ss_pred HcCCCCCCEEEEecCCchHHHHHHHHh-c----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc-
Q 047022 179 KVKLVKGQEVLEIGCGWGTLAIEIVRQ-T----GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM- 252 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~G~~~~~la~~-~----~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l- 252 (381)
.+.++|+++|||+++..|+=+..+.+. . ...|++-|.++.-+........... ..++.+... |....+...+
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~-~~~~~p~~~~~ 227 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNH-DASLFPNIYLK 227 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecc-cceeccccccc
Confidence 456789999999999999988887765 2 1379999999988888777764332 224444444 4443332110
Q ss_pred --cccCCCcccEEEEc------hhhHhhCh---------------hcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 253 --TELFLGNFSTVFIC------GMIEAVGH---------------DYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 253 --~~~~~~~fD~Ivs~------~~l~~~~~---------------~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
.......||.|++- +++.+-+. .-....+.+..++||+||.++.++..-
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 00123579999972 12222111 012357888999999999999887653
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=53.44 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=76.1
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHH----HHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEI----KVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~----~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
...+|||+|+|+|-.++.++...+.+|+..|+.......... ....+.+...+.+... ++....... +....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L-~Wg~~~~~~---~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAIL-VWGNALDVS---FRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEE-ecCCcccHh---hccCC
Confidence 356799999999988888888778899999987544332221 1122233335666665 665443211 12233
Q ss_pred -ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 260 -FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 260 -fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
||+|++..++.+- +.+..++..+...|..+|.+++..+-++
T Consensus 162 ~~DlilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 162 PFDLILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cccEEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999988776 4578888889999999997777665433
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.021 Score=58.13 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=66.8
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-----------ccCc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-----------CLKP 249 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-----------~l~~ 249 (381)
..++++|+-+|||. |..++..++..|++|+++|.+++.++.+++. | .++..- |.. .+..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i-~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLEL-DFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEe-ccccccccccchhhhcch
Confidence 45789999999997 8888888888899999999999988877763 3 222211 111 1110
Q ss_pred CC----ccccC--CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 250 TN----MTELF--LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 250 ~~----l~~~~--~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+. ...+. .+.+|+|+.......- ..+..+.+++.+.+||||.++.
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~--~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGK--PAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcc--cCcchHHHHHHHhcCCCCEEEE
Confidence 00 00001 1469999987443221 1233335999999999999554
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.032 Score=48.69 Aligned_cols=107 Identities=16% Similarity=0.113 Sum_probs=62.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CC-ccccCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TN-MTELFL 257 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~-l~~~~~ 257 (381)
++|+++|||+||.+|.++.-+.++ +...|.|||+-.-. + . ..++++.+.|+++... .. ...++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p---~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------P---P-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------C---C-CCcccccccccCCHHHHHHHHHhCCC
Confidence 468999999999999999988887 66789999985321 1 1 1233333214433210 00 012355
Q ss_pred CcccEEEEchh--------hHhhCh-hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 258 GNFSTVFICGM--------IEAVGH-DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 258 ~~fD~Ivs~~~--------l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
...|+|+|-.. ..|... +--.+++.-....++|+|.++.-+.+
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 78898888532 222110 01123444445667899997776543
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.24 Score=48.32 Aligned_cols=98 Identities=19% Similarity=0.077 Sum_probs=65.9
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecC--c---cccCcCCccc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT--V---NCLKPTNMTE 254 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d--~---~~l~~~~l~~ 254 (381)
..++.+|+=+|||+ |.++..+++..| .+|+.+|.+++-++.|++..... .+..... + . ..+.
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~-~~~~~~~~~~t------ 234 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSE-DDAGAEILELT------ 234 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCcc-ccHHHHHHHHh------
Confidence 34555999999997 888788887766 58999999999999998864211 1111111 1 0 0111
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE-EcC
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS-TVP 299 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i-~~~ 299 (381)
....+|+++-. .+ ....+..+.++++|||.+++ .++
T Consensus 235 -~g~g~D~vie~-----~G---~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 235 -GGRGADVVIEA-----VG---SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred -CCCCCCEEEEC-----CC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence 12369999876 33 25588899999999999554 444
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.018 Score=57.68 Aligned_cols=132 Identities=11% Similarity=0.128 Sum_probs=93.7
Q ss_pred eeecccCCCCCCHHHHHHHHHHHHHHHcCCCC---CCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHH
Q 047022 153 YSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVK---GQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAE 224 (381)
Q Consensus 153 ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~---~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~ 224 (381)
+....|+.+.-...+-|...+..+++...-.. -..|+-+|+|-|-+.....+. ...++++++-+|+.+-..+
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~ 412 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ 412 (649)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh
Confidence 34455665555566667776677777654322 235678899999877655443 2467899999999988777
Q ss_pred HHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhc-HHHHHHHHHhccccCce
Q 047022 225 IKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAENGL 293 (381)
Q Consensus 225 ~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~ 293 (381)
. ....++..+|+++.+ |.++.++ +..+.|++|| +.+..+++.. -++.+..+.+.|||+|+
T Consensus 413 ~-~n~~~W~~~Vtii~~-DMR~w~a------p~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgI 473 (649)
T KOG0822|consen 413 N-RNFECWDNRVTIISS-DMRKWNA------PREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGI 473 (649)
T ss_pred h-hchhhhcCeeEEEec-cccccCC------chhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCce
Confidence 6 444567789999999 9999882 2378897776 4555565433 46789999999999976
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.067 Score=51.54 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=63.9
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
....+++|++||-.|+|. |.++..+++..|++|++++.+++..+.+++. |.. . .. +..+..
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~----~-vi-~~~~~~-------- 220 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA----S-AG-GAYDTP-------- 220 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc----e-ec-cccccC--------
Confidence 446778999999999874 6777788888899999999998877776653 432 1 11 221111
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.+|+++.... . ...+....+.|++||++++.
T Consensus 221 ~~~~d~~i~~~~---~-----~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 221 PEPLDAAILFAP---A-----GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cccceEEEECCC---c-----HHHHHHHHHhhCCCcEEEEE
Confidence 145887664321 1 24677788999999997654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0078 Score=60.06 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=64.1
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEEEEEcC--CHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKYTGITL--SELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v~gvDi--s~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
..|+|..+|.|+++..+... .+-|.-+-+ .++.+...- +.|+-+ .. . |+.+.-+ .-+.+||+|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~vIy----dRGLIG---~y-h-DWCE~fs-----TYPRTYDLl 431 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPVIY----DRGLIG---VY-H-DWCEAFS-----TYPRTYDLL 431 (506)
T ss_pred eeeeeecccccHHHHHhccC-CceEEEecccCCCCcchhhh----hcccch---hc-c-chhhccC-----CCCcchhhe
Confidence 46999999999999999875 443332222 233333332 235421 11 1 3332210 234899999
Q ss_pred EEchhhHhhChh-cHHHHHHHHHhccccCceEEEE
Q 047022 264 FICGMIEAVGHD-YMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 264 vs~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
-+.++|.+..+. +...++-++.|+|+|+|.++|-
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 999988876432 5788999999999999998885
|
; GO: 0008168 methyltransferase activity |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.064 Score=46.51 Aligned_cols=135 Identities=15% Similarity=0.169 Sum_probs=80.6
Q ss_pred ecCCchHHHHHHHHhc--CCEEEEEcCC--HHHHHH---HHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 191 IGCGWGTLAIEIVRQT--GCKYTGITLS--ELQLKY---AEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 191 iGcG~G~~~~~la~~~--~~~v~gvDis--~~~~~~---a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+|=|.=.++..++++. +..++++... ++..+. +.+++.... ...+.+..+.|+.++.... ....+.||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-~~g~~V~~~VDat~l~~~~--~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-ELGVTVLHGVDATKLHKHF--RLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-hcCCccccCCCCCcccccc--cccCCcCCEE
Confidence 5556667777788773 4466555544 333322 223333221 1234554444777775210 1245889999
Q ss_pred EEchhhHhhC------h-------hcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHH
Q 047022 264 FICGMIEAVG------H-------DYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVT 330 (381)
Q Consensus 264 vs~~~l~~~~------~-------~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~ 330 (381)
+-+ +.|++ . .-+..+|+.+.++|+++|.+.|+..+... + .. +-+
T Consensus 80 iFN--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--y---~~----------------W~i 136 (166)
T PF10354_consen 80 IFN--FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--Y---DS----------------WNI 136 (166)
T ss_pred EEe--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--C---cc----------------ccH
Confidence 987 55665 1 12557999999999999999998765432 0 00 112
Q ss_pred HHHHhcCCcEEEEEEecchhH
Q 047022 331 SAMTSSSRLCVEHLENIETHY 351 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~~~~y 351 (381)
..+++++||.+.....+....
T Consensus 137 ~~lA~~~gl~l~~~~~F~~~~ 157 (166)
T PF10354_consen 137 EELAAEAGLVLVRKVPFDPSD 157 (166)
T ss_pred HHHHHhcCCEEEEEecCCHHH
Confidence 455566899999888776543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.05 Score=51.98 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=66.5
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccccC
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTELF 256 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~~~ 256 (381)
...+.++.+||..|||. |..+..+++..|.+|++++.+++..+.+++. |+. .... ..+... ..+....
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g~~----~~~~--~~~~~~~~~~~~~~ 229 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----GAD----EVLN--SLDDSPKDKKAAGL 229 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CCC----EEEc--CCCcCHHHHHHHhc
Confidence 34567889999999874 8888999988899999999999988877542 331 1111 111000 0000013
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.+|+|+.. ++ ....++++.+.|+++|.++..
T Consensus 230 ~~~~D~vid~-----~g---~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDF-----VG---TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEEC-----CC---CHHHHHHHHHHhhcCCEEEEE
Confidence 3679999875 22 144677889999999997654
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.032 Score=52.39 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
.++..++.+.++|+...+|.--|-|+.+..+.++.+ .+++|+|-++..++.|+++....+ ++++++.. ++.++..
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~-~F~~l~~ 87 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHG-NFANLAE 87 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeC-cHHHHHH
Confidence 456788899999999999999999999999999843 679999999999999999987654 68999998 8876631
Q ss_pred CCccccCCCcccEEEE
Q 047022 250 TNMTELFLGNFSTVFI 265 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs 265 (381)
.+.....+++|-|+.
T Consensus 88 -~l~~~~i~~vDGiL~ 102 (314)
T COG0275 88 -ALKELGIGKVDGILL 102 (314)
T ss_pred -HHHhcCCCceeEEEE
Confidence 111122357777775
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.024 Score=54.64 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=65.8
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
+..+.+.++++||=+|+|. |.++..+++..|++ |++++.+++..+.+++. |.. .+. +..+...+.+..
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~---~~i---~~~~~~~~~~~~ 225 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD---FVI---NSGQDDVQEIRE 225 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEE---cCCcchHHHHHH
Confidence 4556778899999999875 77778888888888 99999999888777543 331 111 111100000000
Q ss_pred c-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 L-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. ....+|+|+.. ++. ...+....+.|+++|++++.
T Consensus 226 ~~~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 226 LTSGAGADVAIEC-----SGN---TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred HhCCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 1 22469999865 332 34456677889999996643
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.07 Score=51.85 Aligned_cols=97 Identities=21% Similarity=0.227 Sum_probs=63.1
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcC---CHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITL---SELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDi---s~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.....++.+||-+|||. |.++..+++..|++|++++. ++..++.+++ .|.. .+..... +..+..
T Consensus 167 ~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~-~~~~~~------ 234 (355)
T cd08230 167 RLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKT-PVAEVK------ 234 (355)
T ss_pred hcccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE-EecCCcc-chhhhh------
Confidence 33456889999999985 88888888888889999986 5666665543 2331 1111111 111100
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+.+|+|+.. ++. ...+....++|++||.+++
T Consensus 235 -~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 235 -LVGEFDLIIEA-----TGV---PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred -hcCCCCEEEEC-----cCC---HHHHHHHHHHccCCcEEEE
Confidence 12569999886 432 3467788899999999654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.035 Score=52.14 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=64.9
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc----cccCcC
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV----NCLKPT 250 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~----~~l~~~ 250 (381)
++.....++++||-+|+|. |.++..+++..|++ |+++|.+++.++.+++. |.. ..+... +. ..+.
T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~~i~~~-~~~~~~~~~~-- 183 (280)
T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT--ALAEPE-VLAERQGGLQ-- 183 (280)
T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc--EecCch-hhHHHHHHHh--
Confidence 3445556899999999975 77888888878876 89999998877776653 321 111011 11 1111
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+-. ++. ...++.+.+.|+|+|++++.
T Consensus 184 -----~~~g~d~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 184 -----NGRGVDVALEF-----SGA---TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred -----CCCCCCEEEEC-----CCC---hHHHHHHHHHhcCCCEEEEe
Confidence 22469999875 332 45677788999999996653
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.061 Score=52.39 Aligned_cols=104 Identities=20% Similarity=0.175 Sum_probs=65.9
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+...++++++||-.|||. |..+..+++..|+ +|+++|.+++..+.+++. |...-+..... +..+. +..
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~-~~~~~----i~~ 239 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GATHTVNSSGT-DPVEA----IRA 239 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCceEEcCCCc-CHHHH----HHH
Confidence 3445678899999999975 7888888888887 499999999988887543 33100111111 11100 000
Q ss_pred c-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 L-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. ....+|+|+-. ++. ...++...+.|++||++++.
T Consensus 240 ~~~~~g~d~vid~-----~g~---~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 240 LTGGFGADVVIDA-----VGR---PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HhCCCCCCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEE
Confidence 1 22468999875 332 34566678899999997654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.029 Score=54.99 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=66.9
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+.+...++++++||=.|+|. |.++..+++..|+ +|+++|.+++.++.+++. |...-+..... +..+ .+.
T Consensus 183 ~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~-~~~~----~i~ 253 (371)
T cd08281 183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GATATVNAGDP-NAVE----QVR 253 (371)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCceEeCCCch-hHHH----HHH
Confidence 34556678999999999975 7788888888888 699999999988877653 33100111111 1100 000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+.+|+|+.. ++. ...+....+.|+++|+++..
T Consensus 254 ~~~~~g~d~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 254 ELTGGGVDYAFEM-----AGS---VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHhCCCCCEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEE
Confidence 0112368999875 322 34566778899999996653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.022 Score=56.14 Aligned_cols=113 Identities=17% Similarity=0.139 Sum_probs=70.9
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....+.++.+||.+|||. |..+..+++..+. ++++++.+++..+.+++.. +. ..+..... + ... ..+..+
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~-~--~~~-~~l~~~ 249 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEV-D--DVV-EALREL 249 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcc-h--HHH-HHHHHH
Confidence 455677899999999998 9999999998786 5999999999888887652 11 01111111 1 000 000001
Q ss_pred -CCCcccEEEEchhh-----------Hhh--ChhcHHHHHHHHHhccccCceEEEEc
Q 047022 256 -FLGNFSTVFICGMI-----------EAV--GHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 256 -~~~~fD~Ivs~~~l-----------~~~--~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
....+|+|+..-.- .|. +..+....++++.++|+|+|.+++..
T Consensus 250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 22469999875211 111 11123567888999999999976543
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.038 Score=52.27 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE 229 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~ 229 (381)
..+++++.... .+|+.|||.-||+|+.+..+.+ .|-+.+|+|++++.++.|++++..
T Consensus 196 ~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 44556666554 6899999999999999887766 699999999999999999999853
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.041 Score=54.09 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEecCccccCcCCccccCCCcc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TG-CKYTGITLSELQLKYAEIKVKEAGLQD-TSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~-~~v~gvDis~~~~~~a~~~~~~~gl~~-~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.+.+|||.=||+|.=++..+.. .+ .+|+.-|+|++.++..+++++.+++.+ ++++... |+..+-. .....|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~-DAn~ll~-----~~~~~f 122 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNM-DANVLLY-----SRQERF 122 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES--HHHHHC-----HSTT-E
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehh-hHHHHhh-----hccccC
Confidence 3468999999999999999887 33 589999999999999999999999987 7899998 8876530 134789
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+|=.- -+| .+..|+..+.+.++.||.+.+|.-+
T Consensus 123 D~IDlD----PfG--Sp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 123 DVIDLD----PFG--SPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EEEEE------SS----HHHHHHHHHHEEEEEEEEEEE--
T ss_pred CEEEeC----CCC--CccHhHHHHHHHhhcCCEEEEeccc
Confidence 987653 122 3678999999999999999988543
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.018 Score=54.73 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
++.+++.+.++++..++|.--|.|+.+..++++ ++++++|+|.++++++.+++++... .+++.+... ++.++.. .
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~-~F~~l~~-~ 84 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHG-NFSNLDE-Y 84 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES--GGGHHH-H
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEec-cHHHHHH-H
Confidence 457788888889999999999999999999987 5689999999999999998887543 468999999 8877641 1
Q ss_pred cccc-CCCcccEEEEc
Q 047022 252 MTEL-FLGNFSTVFIC 266 (381)
Q Consensus 252 l~~~-~~~~fD~Ivs~ 266 (381)
+... ...++|.|+.-
T Consensus 85 l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 85 LKELNGINKVDGILFD 100 (310)
T ss_dssp HHHTTTTS-EEEEEEE
T ss_pred HHHccCCCccCEEEEc
Confidence 1112 23578888863
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.034 Score=49.67 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=56.6
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
+.++-.++ | +.|+|+|.-.|+-++..|.. ..++|+|+|+...... ++......+.++|+++++ |..+..
T Consensus 25 qeli~~~k--P-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~G-ds~d~~ 98 (206)
T PF04989_consen 25 QELIWELK--P-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQG-DSIDPE 98 (206)
T ss_dssp HHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES--SSSTH
T ss_pred HHHHHHhC--C-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEEC-CCCCHH
Confidence 34555553 4 59999999998888877653 3479999999543221 222223345579999999 876542
Q ss_pred cC-Ccccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 249 PT-NMTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 249 ~~-~l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.- .+... ......+|+-- + .|.- ++....|+....+++||+++++.
T Consensus 99 ~~~~v~~~~~~~~~vlVilD-s-~H~~-~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVILD-S-SHTH-EHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp HHHTSGSS----SSEEEEES-S------SSHHHHHHHHHHT--TT-EEEET
T ss_pred HHHHHHHhhccCCceEEEEC-C-CccH-HHHHHHHHHhCccCCCCCEEEEE
Confidence 00 00001 11223344432 2 2221 24577788899999999998774
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.041 Score=46.87 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=62.4
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSD-YIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~-~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+++++-+|+..=..-..+.++...+|..++.++- ++-.+ ..+++. +... |+..-- ....++||.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L--~i~~~------~~dr~ssi~p~-df~~~~-----~~y~~~fD~~ 67 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKL--EIQEE------FRDRLSSILPV-DFAKNW-----QKYAGSFDFA 67 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeeccc--ccCcc------cccccccccHH-HHHHHH-----HHhhccchhh
Confidence 5678888887544433334432346888886542 11111 111221 1112 221100 0123789999
Q ss_pred EEchhhHhhChh---------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 264 FICGMIEAVGHD---------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 264 vs~~~l~~~~~~---------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
.|..++||++-. .....+.++.++|||||.+++++|-..
T Consensus 68 as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 68 ASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred heechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 999999999731 234678889999999999999998654
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.11 Score=51.06 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=65.3
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe-cCccccCcCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV-ITVNCLKPTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~-~d~~~l~~~~l~ 253 (381)
.+...+++|++||=+|||. |..+..+++..|+ +|+++|.+++.++.+++. |...-+..... .++.+. +.
T Consensus 191 ~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~----v~ 262 (381)
T PLN02740 191 WNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GITDFINPKDSDKPVHER----IR 262 (381)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCcEEEecccccchHHHH----HH
Confidence 3456678999999999985 7888888888888 699999999988887653 43211111100 001100 00
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i 296 (381)
....+.+|+|+-. ++. ...++.....+++| |++++
T Consensus 263 ~~~~~g~dvvid~-----~G~---~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 263 EMTGGGVDYSFEC-----AGN---VEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred HHhCCCCCEEEEC-----CCC---hHHHHHHHHhhhcCCCEEEE
Confidence 1112369999875 432 34566777888886 88554
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.047 Score=49.08 Aligned_cols=53 Identities=28% Similarity=0.326 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHH
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEI 225 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~ 225 (381)
..++++++.. ..+|+.|||.-||+|+.+..+.+ .|-+.+|+|++++..+.|++
T Consensus 179 ~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhh-hccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC
Confidence 4455666655 47899999999999999988776 69999999999999998874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.011 Score=57.57 Aligned_cols=87 Identities=15% Similarity=0.289 Sum_probs=66.4
Q ss_pred CCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH
Q 047022 150 SMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE 229 (381)
Q Consensus 150 ~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~ 229 (381)
.+.|+..||.+. |..-.. + +.. -.++|..|.|+-||-|-+++.++++ +|+|++-|++++++++.+.+++.
T Consensus 224 k~DfskVYWnsR---L~~Ehe----r-lsg-~fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~l 293 (495)
T KOG2078|consen 224 KFDFSKVYWNSR---LSHEHE----R-LSG-LFKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKL 293 (495)
T ss_pred EEecceEEeecc---chhHHH----H-Hhh-ccCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccc
Confidence 356788899742 211111 1 222 2579999999999999999999996 89999999999999999999887
Q ss_pred cCCCCC-eEEEEecCcccc
Q 047022 230 AGLQDT-SDYIFVITVNCL 247 (381)
Q Consensus 230 ~gl~~~-i~~~~~~d~~~l 247 (381)
+-+.+. |++... |+.+.
T Consensus 294 Nkv~~~~iei~Nm-da~~F 311 (495)
T KOG2078|consen 294 NKVDPSAIEIFNM-DAKDF 311 (495)
T ss_pred cccchhheeeecc-cHHHH
Confidence 776655 888888 76543
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.033 Score=52.01 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=80.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEecCccccCcCCccccCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEA--GL-QDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~--gl-~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
+...++||-||.|.|+.....+++.. ..+.-+|+....++..++..+.. |. ..++.+..+ |...+-. ....
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iG-DG~~fl~----~~~~ 193 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIG-DGFLFLE----DLKE 193 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEec-cHHHHHH----Hhcc
Confidence 44567999999999999999888733 37899999999999888877643 22 247899999 8765421 1235
Q ss_pred CcccEEEEch--hhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 258 GNFSTVFICG--MIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 258 ~~fD~Ivs~~--~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
++||+|+.-- .+--........+++.+.+.||++|++++.
T Consensus 194 ~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 194 NPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred CCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 8999998632 111111124678999999999999997654
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.16 Score=46.40 Aligned_cols=99 Identities=23% Similarity=0.228 Sum_probs=62.6
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccccCCCc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTELFLGN 259 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~~~~~~ 259 (381)
+.++.+||..|+|. |..+..+++..|.+|++++.+++..+.+++. +.. .+. +...... ..+.....+.
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~---~~~~~~~~~~~~~~~~~~ 201 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVI---DYKEEDLEEELRLTGGGG 201 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eec---cCCcCCHHHHHHHhcCCC
Confidence 37899999999985 7777888887889999999998877766443 211 111 1111100 0000012367
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|+|+.. ++. ...+..+.+.|+++|.++...
T Consensus 202 ~d~vi~~-----~~~---~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 202 ADVVIDA-----VGG---PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCEEEEC-----CCC---HHHHHHHHHhcccCCEEEEEc
Confidence 9999976 321 145666788899999966543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.071 Score=48.34 Aligned_cols=111 Identities=14% Similarity=0.212 Sum_probs=75.9
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHH----HHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQ----LKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~----~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
++.+.++||.+||-+|+++|....++..- +..-|.+++.|+.. +..|+++ .||--+.. |++...
T Consensus 149 vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiE-DArhP~-- 218 (317)
T KOG1596|consen 149 VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIE-DARHPA-- 218 (317)
T ss_pred ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeec-cCCCch--
Confidence 45677899999999999999988888765 45678999988643 3444443 46666667 776542
Q ss_pred CccccCCCcccEEEEchhhHhhChh-cHHHHHHHHHhccccCceEEEEcCCCCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHD-YMEELFSCCESLLAENGLSCSTVPDQCY 303 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~~i~~~~~~~ 303 (381)
.. ...-+..|+|++. +.+. +...+.-+.+-.||+||-++|++-....
T Consensus 219 KY-RmlVgmVDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisikanci 266 (317)
T KOG1596|consen 219 KY-RMLVGMVDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIKANCI 266 (317)
T ss_pred he-eeeeeeEEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEecccc
Confidence 00 0122578888886 4333 3344456778899999999988755443
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.083 Score=48.24 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA 230 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~ 230 (381)
.++.++.... .+|+.|||.-||+|+.+..+.+ .+.+.+|+|++++..+.+.+++...
T Consensus 152 l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 152 SLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 3445555443 6899999999999999888776 5999999999999999999998654
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.086 Score=50.39 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=65.2
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe---cCccccCcCCccccCCC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV---ITVNCLKPTNMTELFLG 258 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~---~d~~~l~~~~l~~~~~~ 258 (381)
..++|||+|.|.|.-+..+-.- +. ..++.++.|+..-+........... .+...... .|-..++ ..+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp-------~ad 184 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLP-------AAD 184 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCC-------ccc
Confidence 3467999999998766544332 22 2577788888766555544332221 12222222 0222333 346
Q ss_pred cccEEEEchhhHhhChh-cHHHHHHHHHhccccCceEEEEcCC
Q 047022 259 NFSTVFICGMIEAVGHD-YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.|++|+...-+-+.+.+ .+..+++.+..++.|||.++|.-+.
T Consensus 185 ~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 185 LYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred eeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 67877776655555432 3445889999999999998887554
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.14 Score=49.53 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=61.2
Q ss_pred cCCCCCCEEEEecCCc-hHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 180 VKLVKGQEVLEIGCGW-GTLAIEIVRQ-T-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~-G~~~~~la~~-~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
+.+++|++||-+|||. |.++..++++ . +.+|+++|.+++.++.+++ .+. . .... + +. .
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~~-~---~~-------~ 219 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLID-D---IP-------E 219 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eehh-h---hh-------h
Confidence 4457899999999986 6677777765 3 4689999999887777754 121 1 1111 1 11 1
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+|+|+-. ++.......+....++|++||++++
T Consensus 220 ~~g~d~viD~-----~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 220 DLAVDHAFEC-----VGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred ccCCcEEEEC-----CCCCccHHHHHHHHHhCcCCcEEEE
Confidence 1248998865 3311124577888899999999654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.2 Score=48.59 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=40.5
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHH
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEI 225 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~ 225 (381)
....++++++||-+|||. |..+..+++..|++|+++|.+++.++.+++
T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 346678899999999976 888888888888899999999998887765
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.11 Score=50.17 Aligned_cols=106 Identities=24% Similarity=0.265 Sum_probs=69.3
Q ss_pred HHHHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+.+...+++|++||-.|+ |-|.+++++|+..|..++++.-+++..+.+++. |...-+.+... |+.+--
T Consensus 132 ~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~-~~~~~v--- 203 (326)
T COG0604 132 LALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GADHVINYREE-DFVEQV--- 203 (326)
T ss_pred HHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCCEEEcCCcc-cHHHHH---
Confidence 34455677889999999995 468999999999887777777777666555443 43222333333 332211
Q ss_pred cccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+. ....+|+|+.. ++ ...+......|+++|+++..
T Consensus 204 -~~~t~g~gvDvv~D~-----vG----~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 204 -RELTGGKGVDVVLDT-----VG----GDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred -HHHcCCCCceEEEEC-----CC----HHHHHHHHHHhccCCEEEEE
Confidence 011 22469999987 54 45566688899999996653
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.22 Score=48.78 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=65.5
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~ 253 (381)
.+...++++++||=+|||. |.++..+|+..|+ +|+++|.+++.++.+++. |...-+.. . +.. ... +.+.
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~--~-~~~~~~~-~~v~ 249 (368)
T TIGR02818 178 LNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNP--N-DYDKPIQ-EVIV 249 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcc--c-ccchhHH-HHHH
Confidence 3456778999999999975 7888888888888 799999999988887653 43211111 1 100 000 0000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i 296 (381)
....+.+|+|+-. ++. ...+....+.++++ |++++
T Consensus 250 ~~~~~g~d~vid~-----~G~---~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 250 EITDGGVDYSFEC-----IGN---VNVMRAALECCHKGWGESII 285 (368)
T ss_pred HHhCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCCeEEE
Confidence 0112368998875 432 34567778889886 88553
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.094 Score=50.68 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=63.5
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....+.++++||=.|||. |..+..+++..|++ |++++.+++..+.+++. |...-+..... +...+. ...
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~-~~~~~~----~~~ 224 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAMQTFNSREM-SAPQIQ----SVL 224 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCceEecCccc-CHHHHH----HHh
Confidence 445667899999999975 77888888888886 78999998877766442 32100111111 101110 001
Q ss_pred CCCccc-EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFS-TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD-~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+| +|+-. ++. ...+....++|++||++++.
T Consensus 225 ~~~~~d~~v~d~-----~G~---~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 225 RELRFDQLILET-----AGV---PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred cCCCCCeEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 224577 66543 432 45677788999999996654
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.2 Score=49.79 Aligned_cols=98 Identities=11% Similarity=0.209 Sum_probs=64.2
Q ss_pred HHHHHHHcCC-CCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKL-VKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~-~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
++.+++..++ .+|++|+-+|||+ |......++..|++|+.+|.++.....|++. |. +. . +..+.-
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~----~~--~-~~~e~v-- 255 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY----EV--M-TMEEAV-- 255 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC----EE--c-cHHHHH--
Confidence 3455555443 4799999999998 6666667776899999999998876666542 32 11 1 221211
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHH-HHhccccCceEEEEc
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSC-CESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~-~~~~LkpgG~~~i~~ 298 (381)
...|+|+.. .+. ...+.. ..+.+|+||+++...
T Consensus 256 -------~~aDVVI~a-----tG~---~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 256 -------KEGDIFVTT-----TGN---KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred -------cCCCEEEEC-----CCC---HHHHHHHHHhcCCCCcEEEEeC
Confidence 357999875 322 334444 488999999976543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.099 Score=47.18 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=57.5
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEA-GLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~-gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.++||||.|--..=-.+-.+ +|.+.+|.|+++..++.|+..+..+ ++...|+.....|-..+-+.- .-..+.||
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~gi--ig~nE~yd 155 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGI--IGKNERYD 155 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccc--ccccceee
Confidence 5568999998753322222222 7889999999999999999998877 777677776652322221000 01247899
Q ss_pred EEEEchhhHh
Q 047022 262 TVFICGMIEA 271 (381)
Q Consensus 262 ~Ivs~~~l~~ 271 (381)
++.|+--++.
T Consensus 156 ~tlCNPPFh~ 165 (292)
T COG3129 156 ATLCNPPFHD 165 (292)
T ss_pred eEecCCCcch
Confidence 9999876654
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.11 Score=42.36 Aligned_cols=87 Identities=24% Similarity=0.258 Sum_probs=58.4
Q ss_pred CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCcccc-CCCcccEEEEchhhHh
Q 047022 194 GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTEL-FLGNFSTVFICGMIEA 271 (381)
Q Consensus 194 G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~~-~~~~fD~Ivs~~~l~~ 271 (381)
|.|.++..+++..|++|+++|.++..++.+++. |.. .+. |+.+.. .+.+... ....+|+|+-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga~---~~~---~~~~~~~~~~i~~~~~~~~~d~vid~----- 65 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GAD---HVI---DYSDDDFVEQIRELTGGRGVDVVIDC----- 65 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TES---EEE---ETTTSSHHHHHHHHTTTSSEEEEEES-----
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----ccc---ccc---cccccccccccccccccccceEEEEe-----
Confidence 468899999998889999999999988887764 311 111 222210 0011111 22479999887
Q ss_pred hChhcHHHHHHHHHhccccCceEEEEc
Q 047022 272 VGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 272 ~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++. ...++....+|+|+|++++..
T Consensus 66 ~g~---~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 66 VGS---GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp SSS---HHHHHHHHHHEEEEEEEEEES
T ss_pred cCc---HHHHHHHHHHhccCCEEEEEE
Confidence 442 567888999999999976654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.6 Score=44.28 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=66.8
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
+++...+.++.+||=.|+|. |..+..+++..|.++++++.+++..+.+++. |.. . .. ++....
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~----g~~----~-~~-~~~~~~------ 210 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRL----GVE----T-VL-PDEAES------ 210 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc----CCc----E-Ee-Cccccc------
Confidence 34566778899999998864 7777777887899999999999888877762 432 1 11 222212
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+|+.. .+. ...++.+.+.|+++|.+++
T Consensus 211 -~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 211 -EGGGFDVVVEA-----TGS---PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred -cCCCCCEEEEC-----CCC---hHHHHHHHHHhhcCCEEEE
Confidence 23569999986 322 3456677888999999765
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.12 Score=49.73 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=65.6
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~~ 255 (381)
....+.++++||-.|+|. |..+..+|+..|.++++++.+++..+.+++. +...-+..... +. ..+. ...
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~-~~~~~l~----~~~ 223 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDE-DVAARLR----ELT 223 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCccc-CHHHHHH----HHh
Confidence 455677899999999875 8888889988899999999898888777543 22100111111 11 0010 001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+|+.. ++. ...+..+.+.|+++|.++.
T Consensus 224 ~~~~vd~vld~-----~g~---~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 224 DGEGADVVIDA-----TGN---PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEE
Confidence 23469999986 221 3456778889999999654
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.27 Score=48.40 Aligned_cols=101 Identities=21% Similarity=0.340 Sum_probs=63.8
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc--C-cCCc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL--K-PTNM 252 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l--~-~~~l 252 (381)
+...++++++||-+|+|. |.++..+++..|. .|+++|.+++..+.+++. |.. .++ +..+. + .+.+
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~---~~i---~~~~~~~~~~~~v 256 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVT---DFI---NPNDLSEPIQQVI 256 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---EEE---cccccchHHHHHH
Confidence 345677899999999975 7788888887787 588999998877777543 432 111 21110 0 0000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCS 296 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i 296 (381)
.....+.+|+|+-. ++. ...+....+.|++| |++++
T Consensus 257 ~~~~~~g~d~vid~-----~G~---~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 257 KRMTGGGADYSFEC-----VGD---TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred HHHhCCCCCEEEEC-----CCC---hHHHHHHHHhhccCCCEEEE
Confidence 01112369999875 432 34566778889998 99654
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.38 Score=46.71 Aligned_cols=102 Identities=19% Similarity=0.275 Sum_probs=66.5
Q ss_pred HHHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc---ccCcCC
Q 047022 177 IEKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN---CLKPTN 251 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~---~l~~~~ 251 (381)
.+...+++|++||=.|+ | .|.++..+|+..|++|++++.+++..+.+++.+ |.. .+. |+. +.. +.
T Consensus 151 ~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l---Ga~---~vi---~~~~~~~~~-~~ 220 (348)
T PLN03154 151 YEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL---GFD---EAF---NYKEEPDLD-AA 220 (348)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc---CCC---EEE---ECCCcccHH-HH
Confidence 34456789999999998 4 588999999988999999999988777665332 332 111 111 110 00
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.....+.+|+|+.. ++ ...+..+.++|+++|++++.
T Consensus 221 i~~~~~~gvD~v~d~-----vG----~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 221 LKRYFPEGIDIYFDN-----VG----GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHHHCCCCcEEEEEC-----CC----HHHHHHHHHHhccCCEEEEE
Confidence 000112468999875 43 23567788999999996653
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.34 Score=46.49 Aligned_cols=97 Identities=20% Similarity=0.337 Sum_probs=62.4
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEec--CccccCcCCccc
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI--TVNCLKPTNMTE 254 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~--d~~~l~~~~l~~ 254 (381)
.+...++++||-.|||. |..+..+++..|. ++++++.++...+.+++. +.. .+.... +.....
T Consensus 160 ~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~------ 226 (339)
T cd08232 160 RAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYA------ 226 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhh------
Confidence 34434789999999886 7888888888887 799999998887765543 321 111110 111111
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+.+|+|+... +. ...++.+.+.|+++|+++.
T Consensus 227 ~~~~~vd~vld~~-----g~---~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 227 ADKGDFDVVFEAS-----GA---PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ccCCCccEEEECC-----CC---HHHHHHHHHHHhcCCEEEE
Confidence 0124599999762 11 2356778899999999664
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.038 Score=44.00 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=30.8
Q ss_pred cccEEEEchhhH--hh--ChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 259 NFSTVFICGMIE--AV--GHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 259 ~fD~Ivs~~~l~--~~--~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+||+|+|..+.- |+ +++.+..+|+.+++.|+|||.+++.-.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 489999876543 33 566788999999999999999988753
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.44 Score=45.50 Aligned_cols=105 Identities=20% Similarity=0.321 Sum_probs=66.3
Q ss_pred HHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+.+...+++|++||=.|+ |.|..+..+++..|+++++++.+++..+.+++ .|.. .+ +... +..... +.+.
T Consensus 130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~-~v-i~~~-~~~~~~-~~~~ 201 (325)
T TIGR02825 130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD-VA-FNYK-TVKSLE-ETLK 201 (325)
T ss_pred HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC-EE-Eecc-ccccHH-HHHH
Confidence 345567789999999984 46889999999889999999999887777754 2431 11 1111 100100 0000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+.+|+|+.. ++. ..+....++|+++|+++..
T Consensus 202 ~~~~~gvdvv~d~-----~G~----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 202 KASPDGYDCYFDN-----VGG----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred HhCCCCeEEEEEC-----CCH----HHHHHHHHHhCcCcEEEEe
Confidence 0122469999875 432 2357788999999997643
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.039 Score=51.32 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=63.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHH-------HH----HHHcCCCCCeEEEEecCccccCcCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAE-------IK----VKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~-------~~----~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+++|||+|||.|-..+.+..+..+.++..|.|.+.++.-. -. ..+... -..+... .+.+..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~--~~~i~~s-~l~dg~--- 188 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHK--VDEILNS-LLSDGV--- 188 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhccc--ceecccc-ccccch---
Confidence 368899999999999999998863378888888877663211 00 011000 0111111 111111
Q ss_pred ccccCCC--cccEEEEchhhHhhChhcHHHH-HHHHHhccccCceEEEEc
Q 047022 252 MTELFLG--NFSTVFICGMIEAVGHDYMEEL-FSCCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~--~fD~Ivs~~~l~~~~~~~~~~~-l~~~~~~LkpgG~~~i~~ 298 (381)
....+ .||+|.++.++.... ..... ......+++++|.+++..
T Consensus 189 --~~~t~~~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 189 --FNHTERTHYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred --hhhccccchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhhh
Confidence 01113 799999999887763 33443 566677889999966543
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.23 Score=47.93 Aligned_cols=61 Identities=25% Similarity=0.247 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc---------CCEEEEEcCCHHHHHHHHHHHHHc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT---------GCKYTGITLSELQLKYAEIKVKEA 230 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~---------~~~v~gvDis~~~~~~a~~~~~~~ 230 (381)
-..+-++.+.+..++.-.++|||.|.|.++..+++.. .+++..|++|++..+.=+++++..
T Consensus 63 a~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 63 AEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3444455666665566789999999999999887652 478999999999887777766543
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.14 Score=41.89 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=44.5
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL 232 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl 232 (381)
...+++ .+.+|+|||++-|.-+++++.+....|+++++++...+..++.++...+
T Consensus 22 Y~~idv-k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 22 YGMLNV-YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred hhheee-cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 444443 4679999999999999999986334799999999999999998776543
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.45 Score=46.44 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=65.2
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~ 253 (381)
.+...++++++||=+|+|. |.++..+++..|+ +|++++.+++.++.+++. |.. ..+... +.. +.. +.+.
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga~--~~i~~~-~~~~~~~-~~v~ 250 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GAT--DCVNPK-DHDKPIQ-QVLV 250 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCC--EEEccc-ccchHHH-HHHH
Confidence 4456678999999999875 7777888888888 799999999988877542 432 111111 110 000 0000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i 296 (381)
....+.+|+|+-. ++. ...+....+.|+++ |+++.
T Consensus 251 ~~~~~g~d~vid~-----~g~---~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 251 EMTDGGVDYTFEC-----IGN---VKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred HHhCCCCcEEEEC-----CCC---hHHHHHHHHhhccCCCeEEE
Confidence 1112469999875 332 34667778889997 88654
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.1 Score=41.01 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
..+..++|+|+|+..-+..+... .-.+++.+|+|...++...+.+...-..-.+.-..+ |++..- +..+.
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~-~~~~~L----a~~~~ 151 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCG-DYELAL----AELPR 151 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhh-hHHHHH----hcccC
Confidence 34789999999998777666544 225899999999988765554443322223555667 765321 11222
Q ss_pred CcccE-EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 258 GNFST-VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 258 ~~fD~-Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+--+ ++...++..+.+.+...++..+...|+||-.+.+.+.-
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 22222 33344677777777889999999999999998887654
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.28 Score=50.93 Aligned_cols=112 Identities=15% Similarity=0.293 Sum_probs=71.5
Q ss_pred EEEEecCCchHHHHHHHHh---cC--CEEEEEcCCHHHHHHHHHHH-HHcCC-------CCCeEEEEecCccccCcCC--
Q 047022 187 EVLEIGCGWGTLAIEIVRQ---TG--CKYTGITLSELQLKYAEIKV-KEAGL-------QDTSDYIFVITVNCLKPTN-- 251 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~---~~--~~v~gvDis~~~~~~a~~~~-~~~gl-------~~~i~~~~~~d~~~l~~~~-- 251 (381)
.|+-+|+|-|.+.....+. .+ .+|.+|+-++....+...+. ....+ .++|+++.. |.+......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~s-DMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVA-DGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeC-ccccccccccc
Confidence 5899999999887665443 33 57999999966444444442 22234 346999999 999885210
Q ss_pred --cc-ccCCCcccEEEEchhhHhhChhc-HHHHHHHHHhcccc----Cce----EEEEcCC
Q 047022 252 --MT-ELFLGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAE----NGL----SCSTVPD 300 (381)
Q Consensus 252 --l~-~~~~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~Lkp----gG~----~~i~~~~ 300 (381)
+. ...-+++|+||| +.|..+|+.+ -++-|..+.+.||+ +|+ ..|++|.
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPq 841 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQ 841 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhccccccccCCcceecch
Confidence 00 001147998887 3455555433 35778888888887 786 4566665
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.67 Score=43.24 Aligned_cols=129 Identities=13% Similarity=0.100 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEecCcccc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL--QDTSDYIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl--~~~i~~~~~~d~~~l 247 (381)
.+.++..+...--.....|+.+|||-=.-...+....+.++.=+|. |+.++.-++.+...+. ..+.+++.. |+.+-
T Consensus 67 tr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~-Dl~~~ 144 (260)
T TIGR00027 67 TRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPV-DLRQD 144 (260)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEecc-Cchhh
Confidence 3445555554322223469999999877666664323456666665 5566666666665432 357788888 87621
Q ss_pred CcCCc--cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 248 KPTNM--TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 248 ~~~~l--~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
-.+.+ ..+..+.--++++-+++.+++.+....+++.+.+...||+.+++....
T Consensus 145 w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 145 WPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred HHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 00001 012234455788888999999888999999999998899998887543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.18 Score=48.79 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHH
Q 047022 167 VGQIRKVSVLIEKVKLV-KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEI 225 (381)
Q Consensus 167 ~aq~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~ 225 (381)
+.+.+.+..++..+... +-+.|+|+|.|.|+++..+.-++|..|.+||-|....+.|++
T Consensus 135 qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 44555555666665433 447899999999999999998899999999999766655543
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.31 Score=46.38 Aligned_cols=86 Identities=16% Similarity=0.106 Sum_probs=58.0
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.++++||=+|||. |.++..+++..|++ |.++|.+++.++.+.+. . .- |..+.. ...+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~--------~i-~~~~~~--------~~g~ 201 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E--------VL-DPEKDP--------RRDY 201 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c--------cc-Chhhcc--------CCCC
Confidence 3577899999985 88888888887876 66788887766554321 1 11 221111 2468
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+|+-. ++. ...++.+.+.|+|+|++++.
T Consensus 202 Dvvid~-----~G~---~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 202 RAIYDA-----SGD---PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CEEEEC-----CCC---HHHHHHHHHhhhcCcEEEEE
Confidence 999876 442 44667788999999996643
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.5 Score=45.70 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=78.1
Q ss_pred CCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
..+|||-=||+|.=++.++...+. +++.-|+||..++.+++++..+... +...... |+..+-- .....||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~-DAN~lm~-----~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAEVINK-DANALLH-----ELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecc-hHHHHHH-----hcCCCccEE
Confidence 579999999999999999988555 8999999999999999999887333 4555557 7765531 112678876
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
=.- - +| .+..|+....+.++.||.+.+|--+
T Consensus 126 DiD-P---FG--SPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 126 DID-P---FG--SPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred ecC-C---CC--CCchHHHHHHHHhhcCCEEEEEecc
Confidence 442 1 22 3678888999999999998887543
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.53 Score=45.89 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=64.6
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+...++++++||=+|+|. |..+..+++..|+ +|++++.+++..+.+++. |...-+..... +. .+. +.+..
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~-~~-~~~-~~~~~ 249 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDS-DK-PVS-EVIRE 249 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccc-cc-hHH-HHHHH
Confidence 3456678999999999875 7777888888888 799999999888877542 33111111110 00 000 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i~ 297 (381)
...+.+|+|+.. ++. ...+....+.|+|+ |++++.
T Consensus 250 ~~~~g~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 250 MTGGGVDYSFEC-----TGN---ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred HhCCCCCEEEEC-----CCC---hHHHHHHHHhcccCCCEEEEE
Confidence 112469999865 332 34566778889885 886543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.48 Score=45.04 Aligned_cols=102 Identities=23% Similarity=0.290 Sum_probs=66.2
Q ss_pred HHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCc
Q 047022 176 LIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNM 252 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l 252 (381)
+.+...+.+|++||=.|+ |.|..+..+++..|++|++++.+++..+.+++. |.. .+. |+.+.. .+.+
T Consensus 135 l~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~----Ga~---~vi---~~~~~~~~~~v 204 (329)
T cd08294 135 LLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL----GFD---AVF---NYKTVSLEEAL 204 (329)
T ss_pred HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEE---eCCCccHHHHH
Confidence 345566789999999984 458899999998899999999998877777652 432 111 111100 0000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+.+|+|+.. ++ ...++...+.|+++|+++.
T Consensus 205 ~~~~~~gvd~vld~-----~g----~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 205 KEAAPDGIDCYFDN-----VG----GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred HHHCCCCcEEEEEC-----CC----HHHHHHHHHhhccCCEEEE
Confidence 01122569999875 33 2346778899999999664
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.17 Score=46.88 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=55.1
Q ss_pred HHHHHcC-CCCCCEEEEecCCchHHHHHHHHhc---------CCEEEEEcCCHHHHHHHHHHHHHc-----CCCCCeEEE
Q 047022 175 VLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQT---------GCKYTGITLSELQLKYAEIKVKEA-----GLQDTSDYI 239 (381)
Q Consensus 175 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~---------~~~v~gvDis~~~~~~a~~~~~~~-----gl~~~i~~~ 239 (381)
...+.+. ....-+|+|+|+|.|.++..+++.. ..+++.||+|+.+.+.-++++... ....+|.+
T Consensus 8 ~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w- 86 (252)
T PF02636_consen 8 QMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW- 86 (252)
T ss_dssp HHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-
T ss_pred HHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-
Confidence 3444443 2223699999999999999988751 258999999999888777776442 12334554
Q ss_pred EecCccccCcCCccccCCCcccEEEEchhhHhhCh
Q 047022 240 FVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH 274 (381)
Q Consensus 240 ~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~ 274 (381)
.. +..+.+ ..-+|++++.+..+|-
T Consensus 87 ~~-~l~~~p----------~~~~iiaNE~~DAlP~ 110 (252)
T PF02636_consen 87 LD-DLEEVP----------FPGFIIANELFDALPV 110 (252)
T ss_dssp ES-SGGCS-----------CCEEEEEESSGGGS--
T ss_pred hh-hhhccc----------CCEEEEEeeehhcCce
Confidence 22 333322 3567889999988863
|
; PDB: 4F3N_A 1ZKD_B. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.76 Score=45.70 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=63.3
Q ss_pred HcCCCCCCEEEEec-CC-chHHHHHHHHhcCC---EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc---cCcC
Q 047022 179 KVKLVKGQEVLEIG-CG-WGTLAIEIVRQTGC---KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC---LKPT 250 (381)
Q Consensus 179 ~l~~~~~~~VLDiG-cG-~G~~~~~la~~~~~---~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~---l~~~ 250 (381)
...++++++||=+| || .|.++..+++..|. +|+++|.+++.++.+++...............- +..+ +. +
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i-~~~~~~~~~-~ 247 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYV-NPATIDDLH-A 247 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEE-CCCccccHH-H
Confidence 45677899999997 45 48888888887543 799999999988888775211100001111111 2111 00 0
Q ss_pred Ccccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 251 NMTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 251 ~l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.+... ....+|+|+.. .+. ...+....+.++++|.+++
T Consensus 248 ~v~~~t~g~g~D~vid~-----~g~---~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 248 TLMELTGGQGFDDVFVF-----VPV---PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHHHHhCCCCCCEEEEc-----CCC---HHHHHHHHHHhccCCeEEE
Confidence 00001 22469988864 221 3466778889999887543
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.81 Score=42.36 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=63.8
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....+.++++||-.|||. |..+..+++..|.+ |++++.+++..+.+++. |..+.+. ... + ...
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~-~~~-~--~~~------- 155 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVA-ADT-A--DEI------- 155 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCcccc-ccc-h--hhh-------
Confidence 356677899999999986 77888888888888 99999999887766653 3111111 001 1 111
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+|+.. ++. ...+....+.|+++|.++.
T Consensus 156 ~~~~~d~vl~~-----~~~---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 156 GGRGADVVIEA-----SGS---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred cCCCCCEEEEc-----cCC---hHHHHHHHHHhcCCcEEEE
Confidence 22569999865 211 3356677888999999654
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.24 Score=47.89 Aligned_cols=102 Identities=23% Similarity=0.242 Sum_probs=64.4
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~ 254 (381)
....++++.+||=.|+|. |..+..+++..|+ +|++++.+++..+.+++. |...-+..... ++.+ +. ..
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~-~~~~~l~----~~ 236 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEV-DVVAEVR----KL 236 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCcc-CHHHHHH----HH
Confidence 556678899999998864 7777888888888 899999998888777542 33211111111 1110 10 00
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+.+|+|+.. .+. ...++.+.+.|+++|.++.
T Consensus 237 ~~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 237 TGGGGVDVSFDC-----AGV---QATLDTAIDALRPRGTAVN 270 (351)
T ss_pred hCCCCCCEEEEC-----CCC---HHHHHHHHHhccCCCEEEE
Confidence 122459999976 221 3356778889999999554
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.27 Score=47.25 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=63.6
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc-cc
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT-EL 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~-~~ 255 (381)
...+.++.+||-.|+|. |..+..+++..|.+ +++++-+++..+.+++. +.. .+. +........+. ..
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~~---~~~---~~~~~~~~~~~~~~ 223 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GAD---DTI---NPKEEDVEKVRELT 223 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC---EEe---cCccccHHHHHHHh
Confidence 45567899999999876 78888888888886 99999888877766432 321 111 11110000000 01
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+.. .+. ...+..+.++|+++|+++..
T Consensus 224 ~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 224 EGRGADLVIEA-----AGS---PATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 22459999976 321 34567788999999996543
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.25 Score=50.34 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=64.5
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-----------cCcC
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-----------LKPT 250 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-----------l~~~ 250 (381)
.++.+|+-+|||. |..+..+++..|+.|+++|.+++.++.+++. |. ++..- |..+ +..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----Ga----~~v~v-~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----GA----EFLEL-DFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC----eEEec-cccccccccccceeecCHH
Confidence 3678999999996 7777777877899999999999977766652 22 22222 2110 0000
Q ss_pred Cc------cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 251 NM------TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 251 ~l------~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.. .......+|+|+..-.+.-- ..+.-..+++.+.+|||+.++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~TalipG~--~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALIPGK--PAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcccCCC--CCCeeehHHHHhhCCCCCEEE
Confidence 00 00012569999887544332 233456788899999999855
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.068 Score=50.93 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=81.4
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHH-------HHHHHHHcCCCC-CeEEEEecCccccC
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKY-------AEIKVKEAGLQD-TSDYIFVITVNCLK 248 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~-------a~~~~~~~gl~~-~i~~~~~~d~~~l~ 248 (381)
.....++||+-|+|--.|||++....|. .|+.|.|.||+-.++.. .+.++++.|..+ -+.+..+ |....+
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~-D~sn~~ 278 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA-DFSNPP 278 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee-cccCcc
Confidence 3445578999999999999999998887 69999999999888872 355667777433 3577788 887665
Q ss_pred cCCccccCCCcccEEEEch------h------------------hHhhChhc-------HHHHHHHHHhccccCceEEEE
Q 047022 249 PTNMTELFLGNFSTVFICG------M------------------IEAVGHDY-------MEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~------~------------------l~~~~~~~-------~~~~l~~~~~~LkpgG~~~i~ 297 (381)
-. ..-.||.|+|.- . ..|.|... ....+.-..+.|..||++++-
T Consensus 279 ~r-----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 279 LR-----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred hh-----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 11 245799999832 1 11222111 224566677889999998877
Q ss_pred cC
Q 047022 298 VP 299 (381)
Q Consensus 298 ~~ 299 (381)
.|
T Consensus 354 ~p 355 (421)
T KOG2671|consen 354 LP 355 (421)
T ss_pred cC
Confidence 66
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.84 Score=44.52 Aligned_cols=95 Identities=21% Similarity=0.196 Sum_probs=59.1
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-ecCccccCcCCccccCCCc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIF-VITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~-~~d~~~l~~~~l~~~~~~~ 259 (381)
++++++||-.|||. |.++..+++..|.++++++.+++....+.+ ..|.. .+.. . +...+. ... +.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~---~~Ga~---~vi~~~-~~~~~~-----~~~-~~ 247 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAIN---RLGAD---SFLVST-DPEKMK-----AAI-GT 247 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHH---hCCCc---EEEcCC-CHHHHH-----hhc-CC
Confidence 46889999999985 888888888889999888887654332221 22331 1111 1 111111 011 35
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+|+-. ++. ...++.+.+.|++||+++..
T Consensus 248 ~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 248 MDYIIDT-----VSA---VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCEEEEC-----CCC---HHHHHHHHHHhcCCcEEEEe
Confidence 8988865 332 34567788999999996643
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.74 Score=44.89 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=64.2
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~ 253 (381)
.+...++++++||=+|+|. |.++..+++..|+ +|++++.+++..+.+++. |.. ..+... +.. ... +.+.
T Consensus 180 ~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----Ga~--~~i~~~-~~~~~~~-~~v~ 251 (369)
T cd08301 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----GVT--EFVNPK-DHDKPVQ-EVIA 251 (369)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc--eEEccc-ccchhHH-HHHH
Confidence 3446678999999999875 7777888888888 799999999888877542 432 111111 100 000 0000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i 296 (381)
....+.+|+|+-. ++. ...+....+.+++| |++++
T Consensus 252 ~~~~~~~d~vid~-----~G~---~~~~~~~~~~~~~~~g~~v~ 287 (369)
T cd08301 252 EMTGGGVDYSFEC-----TGN---IDAMISAFECVHDGWGVTVL 287 (369)
T ss_pred HHhCCCCCEEEEC-----CCC---hHHHHHHHHHhhcCCCEEEE
Confidence 0122468988865 332 34566677888996 88654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.26 Score=47.70 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=64.1
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~~ 254 (381)
....++++++||-.|+|. |..+..+++..|. .+++++.+++..+.+++. |...-+..... +.. .+. ..
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~-~~~~~i~----~~ 230 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GATDIVDYKNG-DVVEQIL----KL 230 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCceEecCCCC-CHHHHHH----HH
Confidence 455678899999999874 7788888888787 589999998877766642 43211111111 110 000 00
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+|+.. .+. ...+..+.+.|+++|+++.
T Consensus 231 ~~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 231 TGGKGVDAVIIA-----GGG---QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred hCCCCCcEEEEC-----CCC---HHHHHHHHHHhhcCCEEEE
Confidence 122469999865 321 3467788899999999653
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.61 Score=46.60 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=55.9
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.|++|+=+|+|+ |......++..|++|+.+|.++.....+.. .|. + .. +..+.- ..+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G~----~--v~-~l~eal---------~~aDV 270 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DGF----R--VM-TMEEAA---------ELGDI 270 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cCC----E--ec-CHHHHH---------hCCCE
Confidence 789999999997 655555666679999999999865433322 121 2 22 332222 46899
Q ss_pred EEEchhhHhhChhcHHHHHH-HHHhccccCceEEEE
Q 047022 263 VFICGMIEAVGHDYMEELFS-CCESLLAENGLSCST 297 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~-~~~~~LkpgG~~~i~ 297 (381)
|+.. .+. ...+. .....+|+|++++..
T Consensus 271 VI~a-----TG~---~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 271 FVTA-----TGN---KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred EEEC-----CCC---HHHHHHHHHhcCCCCCEEEEc
Confidence 9875 222 33454 677889999986543
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.23 Score=48.89 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=41.9
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVK 228 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~ 228 (381)
-.+.|++.|+++||-|.+|......++.+. ..+|++||+||.|....+-+..
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHH
Confidence 356778899999999988876666666663 6799999999999988876654
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.35 Score=46.56 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=65.4
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc----cccCcCC
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV----NCLKPTN 251 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~----~~l~~~~ 251 (381)
....+.++.+||-.|+|. |..+..+++..|.+ +++++.+++..+.+++. +...-+..... +. ..+.
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~-~~~~~~~~~~--- 227 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTE-DTPESAEKIA--- 227 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccc-cchhHHHHHH---
Confidence 566778999999998876 88888888888887 89998888877776543 32110111111 10 0110
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.......+|+|+.. .+. ...+....+.|+++|+++..
T Consensus 228 -~~~~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 228 -ELLGGKGPDVVIEC-----TGA---ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred -HHhCCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 00123569999976 221 23566778899999996644
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.13 Score=46.32 Aligned_cols=99 Identities=10% Similarity=0.118 Sum_probs=65.2
Q ss_pred CEEEEecCCchHHHHHHHHh-cC------C---EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC--cc
Q 047022 186 QEVLEIGCGWGTLAIEIVRQ-TG------C---KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN--MT 253 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~-~~------~---~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~--l~ 253 (381)
.+|+|+.+..|.++..+.++ +. . ++++||+.+- + .++ .|.-+++ |+....-.+ +.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------a---PI~-GV~qlq~-DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------A---PIE-GVIQLQG-DITSASTAEAIIE 109 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------C---ccC-ceEEeec-ccCCHhHHHHHHH
Confidence 58999999999999999887 21 1 3999999763 1 122 4556677 776543110 12
Q ss_pred ccCCCcccEEEEchh-----hHh----hChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGM-----IEA----VGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~-----l~~----~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.|...+.|+|+|-+. +|. +..+-+...|.-...+|||||.++.-
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 345568999999663 222 22223446677788999999997653
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.6 Score=39.21 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=64.9
Q ss_pred CCCEEEEecCCch----HHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCccccCC
Q 047022 184 KGQEVLEIGCGWG----TLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTELFL 257 (381)
Q Consensus 184 ~~~~VLDiGcG~G----~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~~~~ 257 (381)
.-+.++++.|+.| .+++.+|.+ .|.++++|-..++-+...++.+...++.+.++|+.+ +. +++-+ .-
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg-~~~e~~~~------~~ 113 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVG-EAPEEVMP------GL 113 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEec-CCHHHHHh------hc
Confidence 3457888866533 344444433 889999999998888888888888888877899998 74 33321 23
Q ss_pred CcccEEEEchhhHhhChhcHH-HHHHHHHhccccCceEEEEc
Q 047022 258 GNFSTVFICGMIEAVGHDYME-ELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~-~~l~~~~~~LkpgG~~~i~~ 298 (381)
...|.++..-- .++.. .+|+.+. +.|.|-+++..
T Consensus 114 ~~iDF~vVDc~-----~~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 114 KGIDFVVVDCK-----REDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred cCCCEEEEeCC-----chhHHHHHHHHhc--cCCCceEEEEe
Confidence 57898887521 22333 4444433 44567666543
|
The function of this family is unknown. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.7 Score=41.44 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=65.2
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~ 254 (381)
+...+.++.+||-+|+|. |..+..+++..|++ +++++.+++..+.+++. +.. .+. +...... .. ..
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~---~~~~~~~~~~-~~ 221 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETV---DPSREDPEAQ-KE 221 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEe---cCCCCCHHHH-HH
Confidence 556678899999999874 77888888888877 89999998887776443 321 111 1111100 00 00
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+.+|+|+.. ++. ...+..+.+.|+++|+++..
T Consensus 222 ~~~~~vd~v~~~-----~~~---~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 222 DNPYGFDVVIEA-----TGV---PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred hcCCCCcEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEE
Confidence 123569999975 321 34667778899999996643
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=92.88 E-value=1 Score=43.31 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=66.6
Q ss_pred HHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+...+++|++||=.|+ |.|.++..+++..|+++++++.+++..+.+++.+ |...-+......+..+. +..
T Consensus 144 ~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~----i~~ 216 (338)
T cd08295 144 YEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAA----LKR 216 (338)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHH----HHH
Confidence 34456789999999997 4588889999988999999999888777776532 33211111100011110 000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+.+|+|+.. ++ ...+..+.++|+++|+++.
T Consensus 217 ~~~~gvd~v~d~-----~g----~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 217 YFPNGIDIYFDN-----VG----GKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred hCCCCcEEEEEC-----CC----HHHHHHHHHHhccCcEEEE
Confidence 112568999875 43 2456778899999999664
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.86 E-value=1 Score=41.46 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHH------HHHHHHcCCCCCCEEEEec--CCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 047022 162 HEDLEVGQIRKV------SVLIEKVKLVKGQEVLEIG--CGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233 (381)
Q Consensus 162 ~~~l~~aq~~~~------~~l~~~l~~~~~~~VLDiG--cG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~ 233 (381)
..++..+..-.+ ..+.+..+++||++||--. .|-|.++.++++..+++++++..+.+-.+.|+++ |..
T Consensus 118 ~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~ 193 (336)
T KOG1197|consen 118 AITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAE 193 (336)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCc
Confidence 455665554333 3445667889999988664 3678899999988899999999888877777765 554
Q ss_pred CCeEEEEecCccccCcCCcccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 234 DTSDYIFVITVNCLKPTNMTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 234 ~~i~~~~~~d~~~l~~~~l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.-|..... |+.+-- ..+ .....|+++-+ ++ ...++.-..+|||.|.++
T Consensus 194 h~I~y~~e-D~v~~V----~kiTngKGVd~vyDs-----vG----~dt~~~sl~~Lk~~G~mV 242 (336)
T KOG1197|consen 194 HPIDYSTE-DYVDEV----KKITNGKGVDAVYDS-----VG----KDTFAKSLAALKPMGKMV 242 (336)
T ss_pred ceeeccch-hHHHHH----HhccCCCCceeeecc-----cc----chhhHHHHHHhccCceEE
Confidence 45666666 654321 011 24668888876 65 345666778999999955
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.99 Score=43.32 Aligned_cols=102 Identities=25% Similarity=0.319 Sum_probs=63.2
Q ss_pred HHcCCCCC--CEEEEecC--CchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 178 EKVKLVKG--QEVLEIGC--GWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 178 ~~l~~~~~--~~VLDiGc--G~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
+...++++ ++||=.|+ |.|..+..+++..|+ +|++++.+++..+.+++.+ |.. . +... .-.++. +.+
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~-~--vi~~-~~~~~~-~~i 217 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD-A--AINY-KTDNVA-ERL 217 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc-E--EEEC-CCCCHH-HHH
Confidence 34445655 89999986 468899999998898 8999999988777766532 432 1 1111 101110 000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+.+|+|+.. ++. . .+..+.++|+++|+++.
T Consensus 218 ~~~~~~gvd~vid~-----~g~---~-~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 218 RELCPEGVDVYFDN-----VGG---E-ISDTVISQMNENSHIIL 252 (345)
T ss_pred HHHCCCCceEEEEC-----CCc---H-HHHHHHHHhccCCEEEE
Confidence 01112569999875 332 1 24677889999999664
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.99 Score=43.75 Aligned_cols=101 Identities=20% Similarity=0.120 Sum_probs=60.4
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-cCCCc
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE-LFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~-~~~~~ 259 (381)
.++.+||=.|+|. |..+..+++..|. +|++++.+++..+.+++ .|...-+..... +..+.. ..+.. .....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~-~~~~~~-~~i~~~~~~~~ 249 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDEL-PDPQRR-AIVRDITGGRG 249 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCccc-ccHHHH-HHHHHHhCCCC
Confidence 4888999999874 7777888888888 99999998887666543 243210111111 110000 00000 12246
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+|+.. ++. ...+....+.|+++|+++..
T Consensus 250 ~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 250 ADVVIEA-----SGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CcEEEEC-----CCC---hHHHHHHHHHhccCCEEEEE
Confidence 9999865 221 33566778899999997654
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.82 Score=43.57 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=63.9
Q ss_pred HHcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
....+.++.+||-+||| .|..+..+++..|.+|++++.+++..+.+++. +.. .+... .-..... . .
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~-~~~~~~~----~-~ 222 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDS-GAELDEQ----A-A 222 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEecc-CCcchHH----h-c
Confidence 33567888999999997 68888888888899999999999887776432 321 11111 1001100 0 1
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.+|+++.. ++. ...+..+.+.|+++|.++..
T Consensus 223 ~~~~d~vi~~-----~~~---~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 223 AGGADVILVT-----VVS---GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred cCCCCEEEEC-----CCc---HHHHHHHHHhcccCCEEEEE
Confidence 2468998875 221 23566778899999986654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.34 Score=47.97 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=64.2
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE- 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~- 254 (381)
....+.++++||=.|+|. |.++..+++..|++ ++.+|.+++.++.+++. |.. .+... .-.+.. +.+..
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~-~~~~~~-~~v~~~ 249 (393)
T TIGR02819 179 VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLS-KDATLP-EQIEQI 249 (393)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecC-CcccHH-HHHHHH
Confidence 345677899998899975 77888888877876 56678888777777653 431 11111 000000 00000
Q ss_pred cCCCcccEEEEchhhHh------hChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEA------VGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~------~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+|+-.-.... ....+....++...+++++||++++
T Consensus 250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 12246899986522110 0001123578888999999999654
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.99 Score=43.25 Aligned_cols=99 Identities=20% Similarity=0.150 Sum_probs=63.2
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~ 255 (381)
..+.+.++++||=.|||. |..+..+++..|.+++.++.+++..+.+++. |...-+..... +... +.
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~----g~~~~i~~~~~-~~~~~~~------- 224 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKL----GAHHYIDTSKE-DVAEALQ------- 224 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc----CCcEEecCCCc-cHHHHHH-------
Confidence 445677899999999874 7788888888899999999998877777442 32100111111 1111 11
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+++.. .+. ...+..+.+.|+++|.++.
T Consensus 225 ~~~~~d~vi~~-----~g~---~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 225 ELGGAKLILAT-----APN---AKAISALVGGLAPRGKLLI 257 (333)
T ss_pred hcCCCCEEEEC-----CCc---hHHHHHHHHHcccCCEEEE
Confidence 11358998864 221 3456777889999999654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.54 Score=45.77 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=63.9
Q ss_pred HHHcCCCCCCEEEEecCC-chHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~ 253 (381)
.....+.++.+||-.|+| .|..+..+++..|.. |++++.++...+.+++. |.. .+. +..... ...+.
T Consensus 175 ~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~----g~~---~vv---~~~~~~~~~~l~ 244 (363)
T cd08279 175 VNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRF----GAT---HTV---NASEDDAVEAVR 244 (363)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHh----CCe---EEe---CCCCccHHHHHH
Confidence 344567788999999886 477888888888885 99999988877766432 321 111 111100 00000
Q ss_pred c-cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 E-LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~-~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. .....+|+++.. ++. ...+..+.+.|+++|+++..
T Consensus 245 ~~~~~~~vd~vld~-----~~~---~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 245 DLTDGRGADYAFEA-----VGR---AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred HHcCCCCCCEEEEc-----CCC---hHHHHHHHHHhhcCCeEEEE
Confidence 0 123569999865 221 34567788899999996643
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=91.98 E-value=3.4 Score=39.22 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=62.7
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
....+.++.+||=.|||. |..+..+++..|.++++++.+++..+.+++ .|. +... +....+
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~----~~~~--~~~~~~-------- 222 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGA----DWAG--DSDDLP-------- 222 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCC----cEEe--ccCccC--------
Confidence 556678889999998875 666677777789999999998877766643 232 1111 222212
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+|+++... + ....++.+.+.|+++|.++..
T Consensus 223 ~~~vD~vi~~~-----~---~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 223 PEPLDAAIIFA-----P---VGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred CCcccEEEEcC-----C---cHHHHHHHHHHhhcCCEEEEE
Confidence 24589887541 1 124577789999999997653
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.5 Score=45.36 Aligned_cols=102 Identities=20% Similarity=0.173 Sum_probs=61.5
Q ss_pred HcCCCCCCEEEEecCC-chHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCcccc
Q 047022 179 KVKLVKGQEVLEIGCG-WGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTEL 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~ 255 (381)
...++++.+||-.|+| .|..+..+++..|. .+++++.++...+.+++. |...-+..... +..+ +. ...
T Consensus 162 ~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~-~~~~~i~----~~~ 232 (347)
T cd05278 162 LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNG-DIVEQIL----ELT 232 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcc-hHHHHHH----HHc
Confidence 3456788999998886 47888888888785 888888887766665542 21100111111 1101 00 001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+.+|+|+.. ++. ...+....+.|+++|+++..
T Consensus 233 ~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 233 GGRGVDCVIEA-----VGF---EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCCCcEEEEc-----cCC---HHHHHHHHHHhhcCCEEEEE
Confidence 23569999875 221 24667778899999996643
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.97 Score=42.89 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=66.4
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
......++||++|.-+|+|. |.....-++..| .+++|+|++++-.+.|++. |.. +++...|..+.-.+-+.
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----GaT---e~iNp~d~~~~i~evi~ 256 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GAT---EFINPKDLKKPIQEVII 256 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----Ccc---eecChhhccccHHHHHH
Confidence 34556678999999999997 444444455555 4899999999999988876 322 22221022220000011
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ce-EEEEcCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GL-SCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~-~~i~~~~ 300 (381)
+..++.+|.-+-. ++. .+.++++....+.| |. +++.++.
T Consensus 257 EmTdgGvDysfEc-----~G~---~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375)
T KOG0022|consen 257 EMTDGGVDYSFEC-----IGN---VSTMRAALESCHKGWGKSVVIGVAA 297 (375)
T ss_pred HHhcCCceEEEEe-----cCC---HHHHHHHHHHhhcCCCeEEEEEecC
Confidence 2335778876643 433 55666667777788 77 5555544
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.4 Score=42.96 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=64.3
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....+.++++||-.|+|. |..+..+++..|. .+++++.++...+.+++. +.. .+... +-.... +.+...
T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~---~~i~~-~~~~~~-~~v~~~ 250 (365)
T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT---HVINP-KEEDLV-AAIREI 250 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---EEecC-CCcCHH-HHHHHH
Confidence 345667899999999875 7888888888888 699999998877766542 321 11111 100100 000001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+.. ++. ...+..+.+.|+++|.++..
T Consensus 251 ~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 251 TGGGVDYALDT-----TGV---PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred hCCCCcEEEEC-----CCC---cHHHHHHHHHhccCCEEEEe
Confidence 13569999875 322 34567788899999996653
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.46 E-value=1.3 Score=47.16 Aligned_cols=106 Identities=18% Similarity=0.167 Sum_probs=61.8
Q ss_pred CCCEEEEecCCchHHHHHHHHh--------c-----CCEEEEEcCCH---HHHHHHH-----------HHHHH-----cC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ--------T-----GCKYTGITLSE---LQLKYAE-----------IKVKE-----AG 231 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~--------~-----~~~v~gvDis~---~~~~~a~-----------~~~~~-----~g 231 (381)
+.-+|+|+|-|+|...+...+. + ..++++++..| +.+..+. +.... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999876655532 1 13788888533 3333322 22111 12
Q ss_pred C------CC--CeEEEEecCccccCcCCccccCCCcccEEEEchhhHh-hChhcHHHHHHHHHhccccCceEE
Q 047022 232 L------QD--TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEA-VGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 232 l------~~--~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~-~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
+ .+ .+++..+ |+++.-+. ....+|+++.-..-.. -|.---..+|+.+.++++|||++.
T Consensus 137 ~~~~~~~~~~~~l~l~~g-d~~~~~~~-----~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFG-DANELLPQ-----LDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEec-CHHHHHHh-----ccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 1 11 2446667 87654311 1256999997542221 111123689999999999999865
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.44 E-value=2.5 Score=41.10 Aligned_cols=96 Identities=18% Similarity=0.104 Sum_probs=59.5
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.+++++||-+|+|. |..+..+++..|+++++++.+++....+.+. .|.. . .+... +...+. . ....+
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~-~-~i~~~-~~~~~~-----~-~~~~~ 245 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD-D-YLVSS-DAAEMQ-----E-AADSL 245 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc-E-EecCC-ChHHHH-----H-hcCCC
Confidence 35889999888875 8888888888888998888887655444332 2431 1 11111 111111 0 11358
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+|+-. ++. ...++.+.+.|+++|+++..
T Consensus 246 D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 246 DYIIDT-----VPV---FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred cEEEEC-----CCc---hHHHHHHHHHhccCCEEEEE
Confidence 988865 332 34567778899999996543
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.4 Score=43.74 Aligned_cols=97 Identities=13% Similarity=0.231 Sum_probs=59.9
Q ss_pred HHHHHHcC-CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVK-LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~-~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+.+++..+ ...|++|+-+|+|+ |......++..|++|+++|.++.....+.. .|. . .. +..+.-
T Consensus 183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G~----~--v~-~leeal--- 248 (406)
T TIGR00936 183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DGF----R--VM-TMEEAA--- 248 (406)
T ss_pred HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cCC----E--eC-CHHHHH---
Confidence 34444433 24789999999998 666666666689999999998864333321 121 1 12 222221
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHH-HHHhccccCceEEEEc
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFS-CCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~-~~~~~LkpgG~~~i~~ 298 (381)
...|+|++. .+. ...+. +....+|+|++++...
T Consensus 249 ------~~aDVVIta-----TG~---~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 249 ------KIGDIFITA-----TGN---KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred ------hcCCEEEEC-----CCC---HHHHHHHHHhcCCCCcEEEEEC
Confidence 356998875 221 34443 4778899999876543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.9 Score=41.43 Aligned_cols=99 Identities=22% Similarity=0.206 Sum_probs=62.6
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc----cccCcCC
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV----NCLKPTN 251 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~----~~l~~~~ 251 (381)
....+.++.+||=.|+|. |..+..+++..| .++++++.++.....+++. |...-+..... +. ....
T Consensus 160 ~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~-~~~~~i~~~~--- 231 (345)
T cd08286 160 LNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKG-DAIEQVLELT--- 231 (345)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccc-cHHHHHHHHh---
Confidence 344567888988888864 677777888778 7899999888776666542 33211121111 11 1111
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+|+.. ++. ...+..+.+.|+++|.++.
T Consensus 232 ----~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 232 ----DGRGVDVVIEA-----VGI---PATFELCQELVAPGGHIAN 264 (345)
T ss_pred ----CCCCCCEEEEC-----CCC---HHHHHHHHHhccCCcEEEE
Confidence 23469999875 332 3356778899999999664
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.78 Score=42.98 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=47.5
Q ss_pred ecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH
Q 047022 155 CAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVK 228 (381)
Q Consensus 155 ~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~ 228 (381)
+-.|+++..+++..| +.+|.+|+-||+|.-.+..++++. ..+|.+||+++.++...+-++.
T Consensus 46 pqiwEDp~Vdmeam~------------~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 46 PQIWEDPSVDMEAMQ------------LGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred ccccCCccccHHHHh------------cCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHH
Confidence 445666665555544 568899999999988888888885 7899999999999987766554
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=91.15 E-value=1.1 Score=35.70 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh
Q 047022 193 CGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI 269 (381)
Q Consensus 193 cG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l 269 (381)
||+|.++..+++. .+..|+.+|.+++..+.+++. .+.+..+ |..+.. .+....-.+.|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~g-d~~~~~--~l~~a~i~~a~~vv~~--- 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYG-DATDPE--VLERAGIEKADAVVIL--- 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES--TTSHH--HHHHTTGGCESEEEEE---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccc-cchhhh--HHhhcCccccCEEEEc---
Confidence 5667777777665 344899999999987776654 2678888 887642 1111223678888886
Q ss_pred HhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 270 EAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.+++.....+....+-+.|...++....
T Consensus 70 --~~~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 70 --TDDDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp --SSSHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred --cCCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 3333333344455566777777766553
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.083 Score=49.46 Aligned_cols=96 Identities=10% Similarity=0.039 Sum_probs=71.8
Q ss_pred CCCEEEEecCCchHHHH-HHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAI-EIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~-~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+..|+|+=+|-|++++ .+.......|.++|.+|..++..+..+..+++.++..+..+ |-+... +....|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~g-d~R~~~-------~~~~Adr 265 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEG-DNRNPK-------PRLRADR 265 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhc-cccccC-------ccccchh
Confidence 45789999999999999 55554234799999999999999999998888888888888 877665 4578888
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCce
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGL 293 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 293 (381)
|.... +... ++-.-.+.++|||.|-
T Consensus 266 VnLGL-lPSs-----e~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 266 VNLGL-LPSS-----EQGWPTAIKALKPEGG 290 (351)
T ss_pred eeecc-cccc-----ccchHHHHHHhhhcCC
Confidence 87642 2111 2333345778888766
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.19 Score=39.86 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=26.8
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLS 216 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis 216 (381)
+...-+|||||.|-+..-+.+. |..-.|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCccccccc
Confidence 4568999999999998888775 8888999974
|
; GO: 0008168 methyltransferase activity |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.1 Score=39.38 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCEEEEecCCchHHHHHHHHh---cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC-CccccCCC
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ---TG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT-NMTELFLG 258 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~---~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~-~l~~~~~~ 258 (381)
.+.|+|+|.-+|+-++..|.. .| .+|+++|++-..++-+... . .+|.|+.+ +-.+.... +.... .+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~eg-ss~dpai~eqi~~~-~~ 141 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEG-SSTDPAIAEQIRRL-KN 141 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeC-CCCCHHHHHHHHHH-hc
Confidence 358999999999988888765 45 7899999987665443322 2 47999999 77654210 00011 12
Q ss_pred cccEEEE-chhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 259 NFSTVFI-CGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 ~fD~Ivs-~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.|-.|+. ..+-||. +..-+.++....+|..|-++++..
T Consensus 142 ~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 142 EYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred CCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEec
Confidence 3334443 3344444 334677788889999999877643
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.22 Score=49.82 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=83.4
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++-+|||.=|++|.-++..++. .+ .+|++.|.+++.++..++++..++..+.++.... |+..+--+. ......||
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~-DA~~lM~~~--~~~~~~FD 185 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHS-DANVLMYEH--PMVAKFFD 185 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccc-hHHHHHHhc--cccccccc
Confidence 5678999999999999999988 44 3799999999999999999999888888888888 876542110 01247799
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+|=.- -.| ....|+..+.+.++.||.+.+|.-+
T Consensus 186 vIDLD----PyG--s~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 186 VIDLD----PYG--SPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred eEecC----CCC--CccHHHHHHHHHhhcCCEEEEEecc
Confidence 87543 111 2578889999999999998887543
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.2 Score=43.75 Aligned_cols=92 Identities=22% Similarity=0.242 Sum_probs=58.0
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHH-HHHHHHHHHHcCCCCCeEEE-EecCccccCcCCccccCCCc
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQ-LKYAEIKVKEAGLQDTSDYI-FVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~-~~~a~~~~~~~gl~~~i~~~-~~~d~~~l~~~~l~~~~~~~ 259 (381)
+++++||-.|||. |..+..+|+..|+++++++.+++. .+.++ ..|.. .++ .. +...+. ... +.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~-~~~~v~-----~~~-~~ 242 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD---SFLVTT-DSQKMK-----EAV-GT 242 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc---EEEcCc-CHHHHH-----Hhh-CC
Confidence 5789999999975 788888888889999999887653 33332 23431 111 11 111111 011 35
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+|+|+-. ++. ...+..+.+.|+++|.++.
T Consensus 243 ~D~vid~-----~G~---~~~~~~~~~~l~~~G~iv~ 271 (375)
T PLN02178 243 MDFIIDT-----VSA---EHALLPLFSLLKVSGKLVA 271 (375)
T ss_pred CcEEEEC-----CCc---HHHHHHHHHhhcCCCEEEE
Confidence 8998875 332 3456777889999999654
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.52 Score=46.41 Aligned_cols=79 Identities=10% Similarity=0.049 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce
Q 047022 214 TLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293 (381)
Q Consensus 214 Dis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 293 (381)
+..|..++.-.-..-..++ ++++++.+ ++.+.-. ..+++++|.++....+.+++++...+.++++.+.++|||+
T Consensus 256 ~~~P~YL~~e~f~~lr~~~-drv~i~t~-si~~~L~----~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaR 329 (380)
T PF11899_consen 256 DCCPPYLRPENFEALRARL-DRVRIHTD-SIEEVLR----RLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGAR 329 (380)
T ss_pred CCCChhhcHhHHHHHhcCC-CeEEEEec-cHHHHHH----hCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCE
Confidence 4445444322211223355 79999999 8876531 1346999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047022 294 SCSTV 298 (381)
Q Consensus 294 ~~i~~ 298 (381)
+++-.
T Consensus 330 V~~Rs 334 (380)
T PF11899_consen 330 VLWRS 334 (380)
T ss_pred EEEee
Confidence 88744
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.91 Score=44.19 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=61.7
Q ss_pred cCCCCCCEEEEecCC-chHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc-ccC
Q 047022 180 VKLVKGQEVLEIGCG-WGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT-ELF 256 (381)
Q Consensus 180 l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~-~~~ 256 (381)
..+.++.+||-.|+| .|..+..+++..|.+ +++++.+++..+.+++. +.. .+... +-.... +.+. ...
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g~~---~v~~~-~~~~~~-~~l~~~~~ 253 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----GAT---HTVNA-AKEDAV-AAIREITG 253 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---eEecC-CcccHH-HHHHHHhC
Confidence 344688899888876 477778888878887 99999888877766432 321 11111 100000 0000 012
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+|+|+.. ++. ...++.+.++|+++|.++..
T Consensus 254 ~~~~d~vld~-----vg~---~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 254 GRGVDVVVEA-----LGK---PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCCCCEEEEe-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 3569999875 432 13567788999999996644
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=90.39 E-value=1.1 Score=43.70 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=63.7
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+...+.++.+||=+|+|. |..+..+++..|.. +++++.+++..+.+++. |...-+..... |. +.. +.+..
T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~-~~-~~~-~~l~~ 248 (365)
T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQ-DK-PIV-EVLTE 248 (365)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccc-cc-hHH-HHHHH
Confidence 4455678899999999874 77777788877874 88888888888777542 33211111100 00 000 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccc-cCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLA-ENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~~~i~ 297 (381)
...+.+|+|+.. .+. ...+....+.|+ ++|+++..
T Consensus 249 ~~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 249 MTDGGVDYAFEV-----IGS---ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred HhCCCCcEEEEC-----CCC---HHHHHHHHHHhccCCCEEEEE
Confidence 112569999875 321 345667788899 99996654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.26 E-value=1 Score=43.19 Aligned_cols=110 Identities=21% Similarity=0.300 Sum_probs=68.5
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+..+++++|++|.-+|||. |-.++.-|+..++ +++++|+++.-++.|++. |.. +++...+..++. +.+
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----GAT---~~vn~~~~~~vv-~~i 247 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----GAT---HFVNPKEVDDVV-EAI 247 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----CCc---eeecchhhhhHH-HHH
Confidence 457778889999999999986 6666666666554 899999999999998876 322 222220111000 000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce-EEEEcCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL-SCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~-~~i~~~~ 300 (381)
....++..|.++-. .+. ...++.....+.++|. +++..+.
T Consensus 248 ~~~T~gG~d~~~e~-----~G~---~~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 248 VELTDGGADYAFEC-----VGN---VEVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred HHhcCCCCCEEEEc-----cCC---HHHHHHHHHHHhcCCeEEEEecCC
Confidence 01223467777543 432 3466777777778998 4444544
|
|
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.10 E-value=2.5 Score=40.56 Aligned_cols=99 Identities=20% Similarity=0.171 Sum_probs=59.8
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
..++.+||-.|+|. |..+..+++..|. ++++++-+++..+.+++. |...-+..... +...+. .....+.
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~~~~~----~~~~~~~ 231 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREE-DVVEVK----SVTDGTG 231 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccc-cHHHHH----HHcCCCC
Confidence 46788888888875 7788888888888 788887777666655542 32111111111 111000 0012357
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+|+.. ++. ......+.+.|+++|.++..
T Consensus 232 vd~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 232 VDVVLEM-----SGN---PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEE
Confidence 9999975 221 33466778899999996654
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.62 Score=43.79 Aligned_cols=68 Identities=9% Similarity=0.136 Sum_probs=49.5
Q ss_pred EEEEecCCchHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+|+|+.||.|+++.-+.+. |.+ +.++|+++..++..+.+... .+..+ |+.++.+.. . ...+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~-Di~~~~~~~---~-~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-------KLIEG-DITKIDEKD---F-IPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-------CCccC-ccccCchhh---c-CCCCCEEEe
Confidence 6999999999998888764 665 68899999988887776531 14566 777775321 0 356999987
Q ss_pred ch
Q 047022 266 CG 267 (381)
Q Consensus 266 ~~ 267 (381)
..
T Consensus 69 gp 70 (275)
T cd00315 69 GF 70 (275)
T ss_pred CC
Confidence 43
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.88 Score=40.83 Aligned_cols=151 Identities=13% Similarity=0.049 Sum_probs=73.6
Q ss_pred cccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC---CEEEEEcCCHHH
Q 047022 143 FFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG---CKYTGITLSELQ 219 (381)
Q Consensus 143 y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~---~~v~gvDis~~~ 219 (381)
|+-+......||..=|.... ..-| ...+++.+..+.-+.+-++-|-+||.|+++--+.--.+ ..|.+.|+++++
T Consensus 13 y~DfAsG~VL~sApG~p~FP--VRLA-sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~a 89 (246)
T PF11599_consen 13 YEDFASGRVLYSAPGFPAFP--VRLA-SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDA 89 (246)
T ss_dssp -CCCSTTTSS--BTTB------HHHH-HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHH
T ss_pred hhhhcCCeEEecCCCCCCcc--HHHH-HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHH
Confidence 45455555555544333322 1111 12223333444334556899999999998877654322 479999999999
Q ss_pred HHHHHHHHHH-----------------------------------------cCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 220 LKYAEIKVKE-----------------------------------------AGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 220 ~~~a~~~~~~-----------------------------------------~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
++.|++++.- .|-.....+... |..+..+.... ....
T Consensus 90 L~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~a-Dvf~~~~~~~~-~~~~ 167 (246)
T PF11599_consen 90 LELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRA-DVFDPSPLAVL-DAGF 167 (246)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE---TT-HHHHHHH-HTT-
T ss_pred HHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheee-cccCCchhhhh-ccCC
Confidence 9999986521 011112456666 66552210000 0224
Q ss_pred cccEEEEch----hhHhhC---hhcHHHHHHHHHhccccCceEEEEc
Q 047022 259 NFSTVFICG----MIEAVG---HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 ~fD~Ivs~~----~l~~~~---~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..|+|+.-- +..+-+ ..-...+++.++.+|-++++++++.
T Consensus 168 ~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 168 TPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp --SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEEec
Confidence 469998732 333333 1235688999999995555566644
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.1 Score=42.84 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=63.0
Q ss_pred HHcCCCCCCEEEEecCC-chHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCcc-
Q 047022 178 EKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMT- 253 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~- 253 (381)
..+.+.++.+||=.|+| .|..+..+++..|.+ +++++.+++..+.+++ .+.. .+. +..+.. .+.+.
T Consensus 159 ~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~---~~~---~~~~~~~~~~i~~ 228 (343)
T cd08235 159 RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD---YTI---DAAEEDLVEKVRE 228 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---EEe---cCCccCHHHHHHH
Confidence 44567889999999986 578888888888888 8899989887776643 2321 111 111100 00000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
......+|+|+.. ++. ...+..+.+.|+++|+++.
T Consensus 229 ~~~~~~vd~vld~-----~~~---~~~~~~~~~~l~~~g~~v~ 263 (343)
T cd08235 229 LTDGRGADVVIVA-----TGS---PEAQAQALELVRKGGRILF 263 (343)
T ss_pred HhCCcCCCEEEEC-----CCC---hHHHHHHHHHhhcCCEEEE
Confidence 0123459999875 221 2356667788999999654
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=89.78 E-value=1.2 Score=42.64 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=61.5
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc----cccCcCCc
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV----NCLKPTNM 252 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~----~~l~~~~l 252 (381)
...+.++.+||=.|||. |..+..+++..|.+ +++++.+++..+.+++ .|...-+..... +. ..+.
T Consensus 163 ~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~~v~~~~~~-~~~~~i~~~~---- 233 (345)
T cd08287 163 SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGATDIVAERGE-EAVARVRELT---- 233 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCceEecCCcc-cHHHHHHHhc----
Confidence 45667888888899874 77778888888875 8888888765554443 233100111100 11 1111
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+.. ++. ...+..+.+.|+++|.++..
T Consensus 234 ---~~~~~d~il~~-----~g~---~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 234 ---GGVGADAVLEC-----VGT---QESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred ---CCCCCCEEEEC-----CCC---HHHHHHHHHhhccCCEEEEe
Confidence 23468999875 322 44677888999999996653
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=2.2 Score=40.77 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=61.5
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHh-cCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCC
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQ-TGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTN 251 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~-~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~ 251 (381)
+.....+.++++||=+|+|. |..+..+++. .|++ +++++.+++..+.+++. |...-+..... +..+ +.
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~-~~~~~~~--- 223 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQE-PLGEALE--- 223 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccc-cHHHHHh---
Confidence 34455678899999999875 6777777775 4874 88899888877776653 33111111111 1111 11
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
. ....+|+|+.. .+. ...+....+.|+++|+++.
T Consensus 224 --~-~g~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 224 --E-KGIKPTLIIDA-----ACH---PSILEEAVTLASPAARIVL 257 (339)
T ss_pred --c-CCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEE
Confidence 0 11235677764 221 3456777899999999664
|
|
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.51 E-value=3.4 Score=39.71 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCccccCCCc
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTELFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~~~~~~ 259 (381)
.++.+||-.|+|. |..+..+++..|+ +|++++.+++..+.+++. |.. .+. +..+.. .+.+.....+.
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~---~~~~~~~~~~~~~~~~~~ 243 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----GAD---VVV---NGSDPDAAKRIIKAAGGG 243 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---EEe---cCCCccHHHHHHHHhCCC
Confidence 4788999998874 7788888888888 789999988877777442 331 111 111110 00000011236
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+|+|+.. ++. ...+..+.+.|+++|.++.
T Consensus 244 ~d~vid~-----~g~---~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 244 VDAVIDF-----VNN---SATASLAFDILAKGGKLVL 272 (350)
T ss_pred CcEEEEC-----CCC---HHHHHHHHHHhhcCCeEEE
Confidence 8999875 321 3457778899999999664
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.6 Score=40.69 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=74.5
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.|..|+-+| -.-..++.++.. ...+|..+|+++..++..++.+.+.|+. +++...- |.++.-|+. ...+||+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~-Dlr~plpe~----~~~kFDv 224 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVF-DLRNPLPED----LKRKFDV 224 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheee-hhcccChHH----HHhhCCe
Confidence 466799998 434444555443 4568999999999999999999998885 7888888 888765432 3488998
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccC---ceEEEEcCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAEN---GLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg---G~~~i~~~~ 300 (381)
++.- -.+.+ ..+..++.+=...||.- |++.++...
T Consensus 225 fiTD-PpeTi--~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 225 FITD-PPETI--KALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred eecC-chhhH--HHHHHHHhccHHHhcCCCccceEeeeecc
Confidence 7764 22223 23466776666777766 557777643
|
|
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.8 Score=40.65 Aligned_cols=103 Identities=20% Similarity=0.235 Sum_probs=61.5
Q ss_pred HHcCCCCCCEEEEecCC-chHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-
Q 047022 178 EKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE- 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~- 254 (381)
....+.++.+||=.|+| .|..+..+++..|++ +++++-+++..+.+++ .|.. .+... .-..+. +.+..
T Consensus 123 ~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~-~~~~~~-~~l~~~ 193 (312)
T cd08269 123 RRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT---EVVTD-DSEAIV-ERVREL 193 (312)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEecC-CCcCHH-HHHHHH
Confidence 35567788999888875 377777778878888 9998888876664433 2331 11111 111110 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+++.. .+. ...+....+.|+++|.++..
T Consensus 194 ~~~~~vd~vld~-----~g~---~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 194 TGGAGADVVIEA-----VGH---QWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred cCCCCCCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEE
Confidence 123569999875 221 33566678889999996643
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.99 E-value=1.4 Score=42.39 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=63.7
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-ecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIF-VITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~-~~d~~~l~~~~l~~~ 255 (381)
....+.++.+||=.|||. |..+..+++..|.++++++.+++..+.+++. |...-+.... . +.... +...
T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~----g~~~~i~~~~~~-~~~~~----~~~~ 229 (345)
T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELAREL----GAVATVNASEVE-DVAAA----VRDL 229 (345)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHh----CCCEEEccccch-hHHHH----HHHH
Confidence 445567889999999864 7777888888899999999998887777432 4310011111 1 11100 0001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+.+|+|+.. ++. ...+..+.+.|+++|.++.
T Consensus 230 ~~~~~d~vi~~-----~g~---~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 230 TGGGAHVSVDA-----LGI---PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred hCCCCCEEEEc-----CCC---HHHHHHHHHHhhcCCEEEE
Confidence 11369999876 321 3456677889999999654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.2 Score=42.65 Aligned_cols=98 Identities=28% Similarity=0.293 Sum_probs=59.3
Q ss_pred CCCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-CC
Q 047022 181 KLVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL-FL 257 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~-~~ 257 (381)
.+.++.+||=.|+|. |..+..+++..| .++++++-+++..+.+++ .|.. .+. +......+.+... ..
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~---~~~~~~~~~i~~~~~~ 233 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD---HVL---NASDDVVEEVRELTGG 233 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc---EEE---cCCccHHHHHHHHhCC
Confidence 356788999999764 666677777767 799999988887666643 2331 111 1111000000001 22
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+|+|+.. ++. ...++.+.+.|+++|+++.
T Consensus 234 ~~~dvvld~-----~g~---~~~~~~~~~~l~~~g~~i~ 264 (340)
T cd05284 234 RGADAVIDF-----VGS---DETLALAAKLLAKGGRYVI 264 (340)
T ss_pred CCCCEEEEc-----CCC---HHHHHHHHHHhhcCCEEEE
Confidence 469999875 321 3456777888999999664
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >PF02036 SCP2: SCP-2 sterol transfer family; InterPro: IPR003033 This domain is involved in binding sterols, and is found in proteins such as SCP2 | Back alignment and domain information |
|---|
Probab=88.88 E-value=1.7 Score=33.79 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=35.4
Q ss_pred eeEEEecCCeEEEecCCCCCCCCceEEEEeChHHHHHhhhcCCcchhHhhhcCceEeccchhhH
Q 047022 9 IHSFLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGL 72 (381)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l 72 (381)
.-.+.+.+|......+.. ..+.++|+.... .|.++ ..|.+.+.+++|.|...++||...+
T Consensus 35 ~~~l~~~~g~~~~~~~~~--~~~d~~i~~~~~-~~~~l-~~g~~~~~~a~~~gklki~Gd~~~~ 94 (102)
T PF02036_consen 35 AWYLDIKDGKLRVGEGDD--EEADVTITGSYE-DLLKL-LTGELDPMQAFMSGKLKIEGDLMLA 94 (102)
T ss_dssp EEEEEETTTTEEEEESSS--SS-SEEEEEEHH-HHHHH-HTTSS-HHHHHHTTSSEEEESHHHH
T ss_pred EEEEEEECCEEEEecCCC--CCCcEEEEEeHH-HHHHH-HcCCCCchhhhhCCcEEEEcCHHHH
Confidence 344555566544432222 235566666533 33344 4678999999999999999964333
|
This domain has a 3-layer alpha/beta/alpha fold, composed of alpha/beta(3)/(crossover)/beta/(alpha)/beta. The human sterol carrier protein 2 (SCP2) is a basic protein that is believed to participate in the intracellular transport of cholesterol and various other lipids []. The Unc-24 protein of Caenorhabditis elegans contains a domain similar to part of two ion channel regulators (the erythrocyte integral membrane protein stomatin and the C. elegans neuronal protein MEC-2) juxtaposed to a domain similar to nonspecific lipid transfer protein (nsLTP; also called sterol carrier protein 2) [].; GO: 0032934 sterol binding; PDB: 2KSH_A 2KSI_A 1PZ4_A 1C44_A 2CX7_B 1WFR_A 1QND_A 2C0L_B 1IKT_A 3BKR_A .... |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.65 E-value=3.1 Score=39.70 Aligned_cols=106 Identities=22% Similarity=0.210 Sum_probs=63.6
Q ss_pred HHHcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE-EecCcc-ccCcCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYI-FVITVN-CLKPTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~-~~~d~~-~l~~~~l~ 253 (381)
+....+.||++|--+|.| -|.++..+|+..|.+|+++|-+..-.+.+-+++ |...-+.+. .. |.. ++.
T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L---GAd~fv~~~~d~-d~~~~~~----- 244 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL---GADVFVDSTEDP-DIMKAIM----- 244 (360)
T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc---CcceeEEecCCH-HHHHHHH-----
Confidence 344556799998888875 699999999999999999999976555554443 332112211 11 111 111
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE-EEcCCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC-STVPDQ 301 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~-i~~~~~ 301 (381)
.-.++-.|-|.+. - ...++.+.++||++|.++ +..|..
T Consensus 245 ~~~dg~~~~v~~~--a--------~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 245 KTTDGGIDTVSNL--A--------EHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred HhhcCcceeeeec--c--------ccchHHHHHHhhcCCEEEEEeCcCC
Confidence 0112334444432 1 233556788999999954 556654
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=88.65 E-value=2.1 Score=43.15 Aligned_cols=99 Identities=12% Similarity=0.186 Sum_probs=60.9
Q ss_pred HHHHHHHcCC-CCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKL-VKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~-~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
++-+++..++ -.|++|+-+|+|+ |......++..|++|+++|.++.....+... |. .+ . +..+.-
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----G~----~v--v-~leEal-- 307 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----GY----QV--L-TLEDVV-- 307 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----CC----ee--c-cHHHHH--
Confidence 4455555443 4689999999997 6665566665799999999988644333221 22 11 1 222221
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...|+|++. .+ +...+.......+||||+++...
T Consensus 308 -------~~ADVVI~t-----TG--t~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 308 -------SEADIFVTT-----TG--NKDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred -------hhCCEEEEC-----CC--CccchHHHHHhcCCCCCEEEEcC
Confidence 357999874 21 12223467788999999976543
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.55 E-value=2.1 Score=41.99 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=62.3
Q ss_pred cCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc--cccCcCCcc-c
Q 047022 180 VKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV--NCLKPTNMT-E 254 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~--~~l~~~~l~-~ 254 (381)
..++++++||=.|||. |..++.+++..|+ ++++++.+++..+.+++. |+. .+ +... +. .... ..+. .
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~----g~~-~~-v~~~-~~~~~~~~-~~v~~~ 270 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM----GAD-YV-FNPT-KMRDCLSG-EKVMEV 270 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC-EE-Eccc-ccccccHH-HHHHHh
Confidence 4677899999889875 7777788888888 799999888765555542 432 11 1111 10 0000 0000 0
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+.. .+. ....+..+.+.|+++|+++..
T Consensus 271 ~~g~gvDvvld~-----~g~--~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 271 TKGWGADIQVEA-----AGA--PPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred cCCCCCCEEEEC-----CCC--cHHHHHHHHHHHHcCCEEEEE
Confidence 123469999875 321 234567778889999996643
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=88.41 E-value=3.5 Score=39.47 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=62.3
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
..+.+.++.+||=.|||. |..+..+++..|.++++++.+++..+.+++. +.. .+... .-.... . ..
T Consensus 163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~vi~~-~~~~~~-~----~~ 229 (337)
T cd05283 163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKL----GAD---EFIAT-KDPEAM-K----KA 229 (337)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc----CCc---EEecC-cchhhh-h----hc
Confidence 445677888888888864 7777778887889999999998877776432 321 11111 100110 0 01
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.+|+|+.. ++. ...+..+.+.|+++|.++..
T Consensus 230 ~~~~d~v~~~-----~g~---~~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 230 AGSLDLIIDT-----VSA---SHDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred cCCceEEEEC-----CCC---cchHHHHHHHhcCCCEEEEE
Confidence 3568999865 332 22456778899999996543
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.4 Score=42.40 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=59.0
Q ss_pred CCCCCEEEEecCC-chHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCccccCCC
Q 047022 182 LVKGQEVLEIGCG-WGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMTELFLG 258 (381)
Q Consensus 182 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~~~~~~ 258 (381)
..++.+||-.|+| .|..+..+++..|.+ |++++-++...+.+++. +...-+..... +.. .+. ......
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~-~~~~~l~----~~~~~~ 229 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKE-DVVKEVA----DLTDGE 229 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEccccc-CHHHHHH----HhcCCC
Confidence 4578888888876 377778888878886 88888777666655443 32100111111 110 000 001235
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+|+|+.. ++. ...+..+.+.|+++|+++..
T Consensus 230 ~~d~vld~-----~g~---~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 230 GVDVFLEM-----SGA---PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCEEEEC-----CCC---HHHHHHHHHhhcCCCEEEEE
Confidence 69999876 221 34567788899999996543
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.07 E-value=4.5 Score=38.18 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=61.3
Q ss_pred HHHcCCCCCCEEEEecCC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc-
Q 047022 177 IEKVKLVKGQEVLEIGCG--WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT- 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG--~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~- 253 (381)
.+...+.++.+||-.|++ .|..+..+++..|.+++.++.+++..+.++.. +.. ..+... +..... .+.
T Consensus 159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~~~--~~~~~~-~~~~~~--~~~~ 229 (342)
T cd08266 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKEL----GAD--YVIDYR-KEDFVR--EVRE 229 (342)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC--eEEecC-ChHHHH--HHHH
Confidence 345567788999998875 57777777777899999999988776665432 221 111111 110000 000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
......+|.++....- ..+..+.+.|+++|.++..
T Consensus 230 ~~~~~~~d~~i~~~g~---------~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 230 LTGKRGVDVVVEHVGA---------ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred HhCCCCCcEEEECCcH---------HHHHHHHHHhhcCCEEEEE
Confidence 0122468999876321 2345567788999996543
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.8 Score=42.12 Aligned_cols=113 Identities=26% Similarity=0.291 Sum_probs=65.9
Q ss_pred HHHHHHHHHc------CCCCCCEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEec
Q 047022 171 RKVSVLIEKV------KLVKGQEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242 (381)
Q Consensus 171 ~~~~~l~~~l------~~~~~~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~ 242 (381)
..+.-+.... ..++|..||=+|.+. |.+++++|+..+...+....|.+-++.+++. |...-+++...
T Consensus 138 tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l----GAd~vvdy~~~- 212 (347)
T KOG1198|consen 138 TALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL----GADEVVDYKDE- 212 (347)
T ss_pred HHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHc----CCcEeecCCCH-
Confidence 3344555555 678899999998764 7899999998775666677778877777665 42211222222
Q ss_pred CccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 243 TVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 243 d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+.+.. .......||+|+-+ ++. ......+...+++|+..+++...
T Consensus 213 ~~~e~~----kk~~~~~~DvVlD~-----vg~---~~~~~~~~~l~~~g~~~~i~~~~ 258 (347)
T KOG1198|consen 213 NVVELI----KKYTGKGVDVVLDC-----VGG---STLTKSLSCLLKGGGGAYIGLVG 258 (347)
T ss_pred HHHHHH----HhhcCCCccEEEEC-----CCC---CccccchhhhccCCceEEEEecc
Confidence 222221 01114679999986 432 12223345555666666665443
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=87.88 E-value=4.8 Score=38.26 Aligned_cols=87 Identities=20% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+.+|+=||+|. |......++..|++|+.+|.++...+.++. .|. ++. ++.++. ..-..+|+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G~----~~~---~~~~l~------~~l~~aDi 213 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MGL----SPF---HLSELA------EEVGKIDI 213 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCC----eee---cHHHHH------HHhCCCCE
Confidence 578999999986 555555555578999999999875544432 232 221 222221 01256999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
|+.. ++. ...-+++.+.++||+.++
T Consensus 214 VI~t-----~p~---~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 214 IFNT-----IPA---LVLTKEVLSKMPPEALII 238 (296)
T ss_pred EEEC-----CCh---hhhhHHHHHcCCCCcEEE
Confidence 9985 221 223355667789988755
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=87.76 E-value=6.9 Score=36.60 Aligned_cols=99 Identities=20% Similarity=0.290 Sum_probs=63.6
Q ss_pred HcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 179 KVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 179 ~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
...+.++++||=.|+ +.|..+..+++..|++|++++.+++..+.+++ .|.. .+ . . +..+.. ..+...
T Consensus 137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~-~~--~-~-~~~~~~-~~i~~~- 205 (320)
T cd08243 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD-EV--V-I-DDGAIA-EQLRAA- 205 (320)
T ss_pred hcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc-EE--E-e-cCccHH-HHHHHh-
Confidence 344678899999986 46888899999889999999999887666643 2331 11 1 1 110110 001112
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+|+|+.. ++ ...+..+.+.|+++|+++..
T Consensus 206 ~~~~d~vl~~-----~~----~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 206 PGGFDKVLEL-----VG----TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCCceEEEEC-----CC----hHHHHHHHHHhccCCEEEEE
Confidence 3569999875 32 23466778999999996543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=87.66 E-value=2.6 Score=39.33 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=60.5
Q ss_pred HcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCcccc
Q 047022 179 KVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTEL 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~ 255 (381)
...+.++.+||-.|| +.|..+..+++..|+++++++.++...+.+++. +...-+..... +..+ +. ...
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~~~~i~----~~~ 204 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL----GADHVIDYRDP-DLRERVK----ALT 204 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc----CCceeeecCCc-cHHHHHH----HHc
Confidence 455678899999998 357777788887899999999998877766432 32110111111 1100 00 000
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|.++.. ++ ...+..+.+.++++|.++.
T Consensus 205 ~~~~~d~v~~~-----~g----~~~~~~~~~~~~~~g~~v~ 236 (323)
T cd08241 205 GGRGVDVVYDP-----VG----GDVFEASLRSLAWGGRLLV 236 (323)
T ss_pred CCCCcEEEEEC-----cc----HHHHHHHHHhhccCCEEEE
Confidence 22468988875 22 1234556788899998554
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.09 E-value=4.8 Score=35.20 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=59.5
Q ss_pred EEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-------cCC---------CCCeEEEEecCccccC
Q 047022 187 EVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-------AGL---------QDTSDYIFVITVNCLK 248 (381)
Q Consensus 187 ~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-------~gl---------~~~i~~~~~~d~~~l~ 248 (381)
+|--||+|+ | .++..++. .|.+|+.+|.+++.++.+++++.. .+. ..++++. . |+.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~-dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-T-DLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-S-SGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-c-CHHHHh
Confidence 466789987 3 44455555 599999999999999888877654 111 1234422 2 444332
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..|+|+-. +.|.+ +-..++|+++.+.+.|+-.+...+..
T Consensus 78 ----------~adlViEa-i~E~l--~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 78 ----------DADLVIEA-IPEDL--ELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp ----------TESEEEE--S-SSH--HHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred ----------hhheehhh-ccccH--HHHHHHHHHHHHHhCCCceEEecCCC
Confidence 57888765 12333 23578999999999999887765443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.08 E-value=1.3 Score=41.93 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=69.5
Q ss_pred CEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
.+|.-||.|. |..+..+|--.|+.|+.+|+|..-++.....+. .+++..-. +...+. ..-.+.|+||
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~s-t~~~ie------e~v~~aDlvI 236 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYS-TPSNIE------EAVKKADLVI 236 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEc-CHHHHH------HHhhhccEEE
Confidence 4788899885 888877777689999999999887777766542 35666665 554443 1236789998
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
..-.+. +.+.+.-..+++.+.+|||+.++
T Consensus 237 gaVLIp--gakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 237 GAVLIP--GAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEEEec--CCCCceehhHHHHHhcCCCcEEE
Confidence 753332 22456778899999999999954
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=86.59 E-value=1.5 Score=41.75 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=54.5
Q ss_pred CCCEEEEe--cCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-cCCCc
Q 047022 184 KGQEVLEI--GCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE-LFLGN 259 (381)
Q Consensus 184 ~~~~VLDi--GcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~-~~~~~ 259 (381)
++.++|=+ |+| .|..+..+++..|+++++++.+++..+.+++. |.. .+... +-.+.. +.+.. .....
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~----g~~---~~i~~-~~~~~~-~~v~~~~~~~~ 212 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKI----GAE---YVLNS-SDPDFL-EDLKELIAKLN 212 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEEEC-CCccHH-HHHHHHhCCCC
Confidence 34444443 655 48888888888899999999999877777652 322 11211 111110 00000 12246
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+|+.. ++. .......+.|+++|+++..
T Consensus 213 ~d~vid~-----~g~----~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 213 ATIFFDA-----VGG----GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred CcEEEEC-----CCc----HHHHHHHHhhCCCCEEEEE
Confidence 8999864 332 1234457778999996543
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.46 E-value=6.1 Score=38.30 Aligned_cols=105 Identities=18% Similarity=0.291 Sum_probs=63.2
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEE--EecCccc-cCcCCc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYI--FVITVNC-LKPTNM 252 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~--~~~d~~~-l~~~~l 252 (381)
....+.++.+||-+|+|. |..+..+++..|+. +++++.++...+.+++. |....+.+. .. +..+ +. .+
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~-~~~~~~~--~~ 247 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIE-DVESEVE--EI 247 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccc-cHHHHHH--HH
Confidence 456677899999999864 77788888887874 78899887766655542 432111111 01 1110 00 00
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+.+|+|+.. ++. ...+..+.+.|+++|+++..
T Consensus 248 ~~~~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 248 QKAMGGGIDVSFDC-----VGF---NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred hhhcCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 00112468999876 331 34577788899999996543
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=86.42 E-value=3.3 Score=40.52 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHH-------HHHHHHcCC-CC
Q 047022 164 DLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYA-------EIKVKEAGL-QD 234 (381)
Q Consensus 164 ~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a-------~~~~~~~gl-~~ 234 (381)
.+-+-+.+.+..+++.+.+.+++.-.|+|+|-|.+...++...++ .-+|+++...--+.+ ++..+..|- ..
T Consensus 172 ~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~ 251 (419)
T KOG3924|consen 172 TYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPN 251 (419)
T ss_pred chhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcC
Confidence 344455666778999999999999999999999999998876444 456777654322222 222233333 33
Q ss_pred CeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 235 ~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.++.+.+ ++.+.. ... .-....++|+++++... +++.--+.++..-+++|-+++-+
T Consensus 252 ~~~~i~g-sf~~~~--~v~-eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 252 KIETIHG-SFLDPK--RVT-EIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred ceeeccc-ccCCHH--HHH-HHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEecc
Confidence 5667777 664422 000 11256788888876432 23333445777778888776543
|
|
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.34 E-value=2.2 Score=40.91 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=59.1
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCccc-cCCC
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTE-LFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~-~~~~ 258 (381)
.++++||-.|+|. |..+..+++..|. ++++++.+++..+.+++. |.. .+. ++.+.+ .+.+.. ....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~---~~~---~~~~~~~~~~~~~~~~~~ 231 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GAT---RAV---NVAKEDLRDVMAELGMTE 231 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---EEe---cCccccHHHHHHHhcCCC
Confidence 4788888888875 7788888888887 688888888776665543 321 111 111100 000000 1235
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+|+|+.. .+. ...+..+.+.|+++|.++..
T Consensus 232 ~~d~v~d~-----~g~---~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 232 GFDVGLEM-----SGA---PSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred CCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 68999874 221 34566678899999996654
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.33 E-value=12 Score=35.52 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=75.3
Q ss_pred HHHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
-+++.-.+++|++|+--|+ +.|...-++|+..|++|+|+--+++-.+++.+.+ |...-|++... |+.+. |
T Consensus 141 gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~l---GfD~~idyk~~-d~~~~----L 212 (340)
T COG2130 141 GLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL---GFDAGIDYKAE-DFAQA----L 212 (340)
T ss_pred HHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhc---CCceeeecCcc-cHHHH----H
Confidence 5566667788998887665 3689999999988999999999999888887643 43323444444 44221 1
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
++--.+..|+.+-+ ++ ...+..+...|++.+++.++
T Consensus 213 ~~a~P~GIDvyfeN-----VG----g~v~DAv~~~ln~~aRi~~C 248 (340)
T COG2130 213 KEACPKGIDVYFEN-----VG----GEVLDAVLPLLNLFARIPVC 248 (340)
T ss_pred HHHCCCCeEEEEEc-----CC----chHHHHHHHhhccccceeee
Confidence 11123778988876 65 45677788999999997665
|
|
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=86.26 E-value=7.6 Score=37.05 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=60.7
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-c
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE-L 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~-~ 255 (381)
...+.++.+||=.|+|. |..+..+++..|+ ++++++.+++....+++ .|.. .... +-.+.. ..+.. .
T Consensus 162 ~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~~~~-~~~~~~-~~l~~~~ 231 (344)
T cd08284 162 RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGAE----PINF-EDAEPV-ERVREAT 231 (344)
T ss_pred hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCCe----EEec-CCcCHH-HHHHHHh
Confidence 35567889999888764 6777778887886 89999888766655544 2321 1111 111110 00000 1
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+.. .+. ...+....+.|+++|+++..
T Consensus 232 ~~~~~dvvid~-----~~~---~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 232 EGRGADVVLEA-----VGG---AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred CCCCCCEEEEC-----CCC---HHHHHHHHHhcccCCEEEEE
Confidence 23569999875 221 34567778889999996643
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.23 E-value=6.5 Score=38.44 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=38.4
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHH
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEI 225 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~ 225 (381)
.....++++++||=+|+|. |..+..+++..|. +|+.++.++...+.+++
T Consensus 183 ~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~ 233 (373)
T cd08299 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE 233 (373)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4456678899999998874 6677777777888 79999999887777744
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=86.19 E-value=3.5 Score=39.23 Aligned_cols=130 Identities=13% Similarity=0.140 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEecCcc
Q 047022 168 GQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL--QDTSDYIFVITVN 245 (381)
Q Consensus 168 aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl--~~~i~~~~~~d~~ 245 (381)
+..+.++..+...-...-..|+-+|||-=+-+-.+-.-.+.+|.-+|. |+.++.=++.+++.+. +...+++.. |++
T Consensus 76 ~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~-Dl~ 153 (297)
T COG3315 76 ARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAV-DLR 153 (297)
T ss_pred HHHHHHHHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEec-ccc
Confidence 344556665555432335789999999755444443323467777776 5666766666666653 336788888 887
Q ss_pred ccC-cCCcc--ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 246 CLK-PTNMT--ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 246 ~l~-~~~l~--~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+-. +..|. ++....--++++-+++.+++.+...++|+.+.....||-.++...+
T Consensus 154 ~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 154 EDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred ccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 322 11111 2234455678899999999998999999999999999999877754
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.17 E-value=6.2 Score=37.52 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=52.0
Q ss_pred CEEEEecCCc-h-HHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+|.=||+|. | .++..+.+ .+ .+|+++|.+++..+.+++ .|+.+ . ... +..+.. ...|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~-~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~-~~~~~~---------~~aD 68 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRR-LGLAGEIVGADRSAETRARARE----LGLGD--R-VTT-SAAEAV---------KGAD 68 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHh-cCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecC-CHHHHh---------cCCC
Confidence 5799999996 3 34444444 35 489999999887665543 23211 1 112 222211 4579
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
+|+.. ++......+++.+...++||..++
T Consensus 69 vViia-----vp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 69 LVILC-----VPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred EEEEC-----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 98887 443334566777777788887543
|
|
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.05 E-value=2.7 Score=40.10 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....++++++||=.|||. |..+..+++. .|.++++++-+++..+.+++. |.. .+ +... +..... +.+...
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~----g~~-~v-~~~~-~~~~~~-~~v~~~ 227 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV----GAD-LT-INSK-RVEDVA-KIIQEK 227 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc----CCc-EE-eccc-ccccHH-HHHHHh
Confidence 455678999999999864 7778888886 499999999999888887542 331 11 1110 000000 000001
Q ss_pred CCCcccE-EEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFST-VFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~-Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. +.+|. +++. .. ...++.+.+.|+++|.++..
T Consensus 228 ~-~~~d~vi~~~-----~~----~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 228 T-GGAHAAVVTA-----VA----KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred c-CCCcEEEEeC-----CC----HHHHHHHHHhccCCCEEEEE
Confidence 1 24784 4433 11 34577788899999996643
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.00 E-value=5 Score=37.81 Aligned_cols=96 Identities=14% Similarity=0.215 Sum_probs=58.0
Q ss_pred EEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-------cCCC---------CCeEEEEecCccccC
Q 047022 187 EVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-------AGLQ---------DTSDYIFVITVNCLK 248 (381)
Q Consensus 187 ~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-------~gl~---------~~i~~~~~~d~~~l~ 248 (381)
+|.=||+|. +.++..+++ .|.+|+.+|.+++.++.+.++... .+.- .++++. . ++.+.-
T Consensus 3 ~V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~~~~~~ 79 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-L-DLKAAV 79 (288)
T ss_pred EEEEECccHHHHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-C-cHHHhh
Confidence 688899985 344555555 488999999999999887764321 1100 112211 2 332221
Q ss_pred cCCccccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEEEcC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...|+|+.. ++.. -...++.++.+.++|+..+.+.+.
T Consensus 80 ---------~~aD~Vi~a-----vpe~~~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 80 ---------ADADLVIEA-----VPEKLELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred ---------cCCCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 457988865 3322 134677888888988876655443
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=85.99 E-value=5 Score=37.63 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=53.7
Q ss_pred EEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 187 EVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 187 ~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
+|.=||+|. |.++..+.+ .|.+|+++|.+++.++.+.+. |. +..... +.. . ....|+|+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~-~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~-~~~-~---------~~~aDlVi 62 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS-LGHTVYGVSRRESTCERAIER----GL---VDEAST-DLS-L---------LKDCDLVI 62 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHC----CC---cccccC-CHh-H---------hcCCCEEE
Confidence 577789985 456666666 488999999998877666543 32 111111 221 1 14579998
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
.. ++......+++++...++|+..+
T Consensus 63 la-----vp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 63 LA-----LPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred Ec-----CCHHHHHHHHHHHHHhCCCCcEE
Confidence 87 55445567788888888777543
|
|
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=85.74 E-value=3.6 Score=40.24 Aligned_cols=108 Identities=17% Similarity=0.080 Sum_probs=64.9
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~ 254 (381)
....+.++++||-.|||. |..+..+++..|. +++++|.+++..+.+++. |.. -+..... +. ..+. .
T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~~-~v~~~~~-~~~~~i~-----~ 238 (375)
T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GAI-PIDFSDG-DPVEQIL-----G 238 (375)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCe-EeccCcc-cHHHHHH-----H
Confidence 455677899998899874 7777888887786 788999988777666543 321 0111111 11 0110 0
Q ss_pred cCCCcccEEEEchhh---HhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMI---EAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l---~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+.+|+|+..-.- ++.+..+....+..+.++|+++|.+..
T Consensus 239 ~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 239 LEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred hhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 112468999875221 111111234567888999999999754
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=85.50 E-value=11 Score=38.59 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=69.1
Q ss_pred CCCEEEEecCCchHHHHHHHHhc--C---CEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEecCccccCcCCccccCC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQT--G---CKYTGITLSELQLKYAEIKVKEAGLQD-TSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~--~---~~v~gvDis~~~~~~a~~~~~~~gl~~-~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
|+..|.|..||+|++.....+.. + ..++|.+..+.+...++.++.-.+... ......+ |....+ . ....
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~-dtl~~~-d---~~~~ 291 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINA-DTLTTK-E---WENE 291 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccC-CcCCCc-c---cccc
Confidence 66899999999999987655431 2 468999999999999998865555431 2333333 322111 0 0122
Q ss_pred CcccEEEEchhhH--------------------hh-Ch--hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 258 GNFSTVFICGMIE--------------------AV-GH--DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 258 ~~fD~Ivs~~~l~--------------------~~-~~--~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+||.|+++--+. |+ ++ ..-..++..+...|++||+..+..+.
T Consensus 292 ~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 292 NGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred ccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecC
Confidence 4578877643111 11 10 11235778889999999996665554
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=84.87 E-value=13 Score=34.54 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhc------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQT------GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~------~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+.+...++|+|||.|.++.++++.. ...++.||-...-. .+..++........++=... |++++....+...
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~ri-DI~dl~l~~~~~~ 93 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRI-DIKDLDLSKLPEL 93 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEE-Eeeccchhhcccc
Confidence 4677899999999999999998863 35789999865433 33333433321123444455 6666652221111
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccc
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLA 289 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lk 289 (381)
. ....-++.+ --|+.-...+-.++.+.+..+
T Consensus 94 ~-~~~~~vv~i--sKHLCG~ATDlaLRcl~~~~~ 124 (259)
T PF05206_consen 94 Q-NDEKPVVAI--SKHLCGAATDLALRCLLNSQK 124 (259)
T ss_pred c-CCCCcEEEE--EccccccchhHHHHhhccCcc
Confidence 1 122223322 124433345666777766665
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=84.65 E-value=2.2 Score=40.31 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=62.3
Q ss_pred HHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-
Q 047022 178 EKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE- 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~- 254 (381)
....+.++.+||=.|+ | .|..+..+|+..|++++.+.-+++..+.+++. |.. .+... +-.... +.+..
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~-~~~~~~-~~i~~~ 203 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRAL----GIG---PVVST-EQPGWQ-DKVREA 203 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhc----CCC---EEEcC-CCchHH-HHHHHH
Confidence 3456778999999886 3 58888889988999998888777766655432 331 11111 100000 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+.. ++. ..+..+.+.|+++|+++..
T Consensus 204 ~~~~~~d~v~d~-----~g~----~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 204 AGGAPISVALDS-----VGG----KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred hCCCCCcEEEEC-----CCC----hhHHHHHHhhcCCcEEEEE
Confidence 122469999875 432 2346778899999996643
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.41 E-value=2 Score=42.20 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=56.1
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|+=+|+|. |..+...++..|++|+.+|.+++.++.+.... + ..+..... +...+. . .-..+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~-~~~~l~-----~-~l~~aDv 233 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYS-NAYEIE-----D-AVKRADL 233 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccC-CHHHHH-----H-HHccCCE
Confidence 346799999984 77777777778899999999987655544332 1 11221112 222221 0 1146899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
|++.-.+. +...+.-+-+++.+.++|++.++
T Consensus 234 VI~a~~~~--g~~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 234 LIGAVLIP--GAKAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred EEEccccC--CCCCCcCcCHHHHhcCCCCCEEE
Confidence 99753211 11111112355667789998855
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.34 E-value=14 Score=34.40 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=61.6
Q ss_pred HcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 179 KVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 179 ~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
.+...++.+||=.|+ +.|..+..+++..|+++++++.+++..+.+++. |.. ... . +..++.
T Consensus 127 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~-~-~~~~~~-------- 189 (305)
T cd08270 127 RGGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLREL----GAA---EVV-V-GGSELS-------- 189 (305)
T ss_pred HhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEE-e-cccccc--------
Confidence 334446899999988 357888888888899999999888877776542 332 111 1 222222
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.+.+|+++.. ++. ..+....+.|+++|+++.
T Consensus 190 ~~~~d~vl~~-----~g~----~~~~~~~~~l~~~G~~v~ 220 (305)
T cd08270 190 GAPVDLVVDS-----VGG----PQLARALELLAPGGTVVS 220 (305)
T ss_pred CCCceEEEEC-----CCc----HHHHHHHHHhcCCCEEEE
Confidence 2468999875 332 246778899999999654
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.25 E-value=12 Score=34.97 Aligned_cols=92 Identities=11% Similarity=0.140 Sum_probs=57.7
Q ss_pred EEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHH-------HHcCCC---------CCeEEEEecCccccC
Q 047022 187 EVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKV-------KEAGLQ---------DTSDYIFVITVNCLK 248 (381)
Q Consensus 187 ~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~-------~~~gl~---------~~i~~~~~~d~~~l~ 248 (381)
+|-=||+|. +.++..+++. |.+|+++|++++.++.+++++ .+.+.- .++++ .. |+..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~-~~~~~- 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TT-DLDDL- 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eC-CHHHh-
Confidence 688899996 4555666664 889999999999887665432 222211 02221 12 33221
Q ss_pred cCCccccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEE
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i 296 (381)
...|+|+.. +++. -...+++++.+.++|+..+..
T Consensus 81 ---------~~aDlVi~a-----v~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 81 ---------KDADLVIEA-----ATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred ---------ccCCeeeec-----ccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 457888876 3321 235889999999999877643
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.24 E-value=9.8 Score=35.76 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=53.5
Q ss_pred EEEEecCCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeEEEEecCccccCcCCccccCCCccc
Q 047022 187 EVLEIGCGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ---DTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 187 ~VLDiGcG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~---~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+|+=||||. |. ++..+++ .|.+|+.++.+++.++..++. ++. ........ -..+.. ....+|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~-~~~~~~-------~~~~~d 68 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNEN----GLRLEDGEITVPVL-AADDPA-------ELGPQD 68 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHHc----CCcccCCceeeccc-CCCChh-------HcCCCC
Confidence 688899986 33 4444555 488999999877665544432 331 11110000 011111 126789
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+|+.. ++..+...+++.+...+.++..++.
T Consensus 69 ~vila-----~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 69 LVILA-----VKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred EEEEe-----cccccHHHHHHHHhhhcCCCCEEEE
Confidence 98886 4444567888888888877765443
|
|
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.19 E-value=8.7 Score=36.70 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=60.0
Q ss_pred HHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....+.++.+||=.|+ | .|..+..+++..|+++++++.+. ..+.+++ .|.. .+... +-.... + ....
T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~----~g~~---~~~~~-~~~~~~-~-~~~~ 239 (350)
T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA----LGAD---TVILR-DAPLLA-D-AKAL 239 (350)
T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh----cCCe---EEEeC-CCccHH-H-HHhh
Confidence 4556788999999997 3 47888888888899998888554 4444432 2431 11111 110000 0 0001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+|+.. ++ ...+..+.+.|+++|.++.
T Consensus 240 ~~~~~d~vi~~-----~g----~~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 240 GGEPVDVVADV-----VG----GPLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred CCCCCcEEEec-----CC----HHHHHHHHHHhccCCEEEE
Confidence 23569999875 32 1246677889999999653
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=84.04 E-value=3.4 Score=39.49 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=61.9
Q ss_pred cCCCCCCEEEEecCC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCccc-c
Q 047022 180 VKLVKGQEVLEIGCG--WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTE-L 255 (381)
Q Consensus 180 l~~~~~~~VLDiGcG--~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~-~ 255 (381)
+.+.++.+||=.|++ .|..+..+++..|.+++.++.+++..+.+++ .|.. .+. +..... ...+.. .
T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~---~~~~~~~~~~~~~~~ 230 (341)
T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE----LGAD---AFV---DFKKSDDVEAVKELT 230 (341)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCc---EEE---cCCCccHHHHHHHHh
Confidence 467789999999885 5888888888889999999999877666533 2321 111 111100 000000 1
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+.+|+|+... . -...+..+.+.|+++|+++..
T Consensus 231 ~~~~vd~vl~~~----~----~~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 231 GGGGAHAVVVTA----V----SAAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred cCCCCCEEEEcC----C----chHHHHHHHHHhhcCCEEEEe
Confidence 235699998521 1 133456678889999996644
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=83.87 E-value=5.4 Score=37.69 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=58.8
Q ss_pred CCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.+||=+|+ | .|..+..+|+..|.++++++.+++..+.+++. |.. .+. +..+...+.+.......+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~v~---~~~~~~~~~~~~~~~~~~d 215 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKL----GAK---EVI---PREELQEESIKPLEKQRWA 215 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc----CCC---EEE---cchhHHHHHHHhhccCCcC
Confidence 4679999987 4 47888888888899999999998877766432 331 111 1111100000011235689
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+.. ++ ...++...+.|+++|+++..
T Consensus 216 ~vld~-----~g----~~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 216 GAVDP-----VG----GKTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred EEEEC-----Cc----HHHHHHHHHHhhcCCEEEEE
Confidence 88865 32 23456778889999996543
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.83 E-value=6.5 Score=37.87 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=60.0
Q ss_pred CEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-------cCCC-----CCeEEEEecCccccCcCC
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-------AGLQ-----DTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-------~gl~-----~~i~~~~~~d~~~l~~~~ 251 (381)
.+|--||+|+ ..++..++. .|.+|+..|++++.++.+++++.. .++. .++++. . ++.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~-~l~~a---- 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-A-TIEAC---- 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-C-CHHHH----
Confidence 5788999996 345555665 599999999999988776654431 2211 122221 1 22211
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
-...|+|+-. +.|.+ +-...+++++.+.++|+..+..++
T Consensus 81 -----v~~aDlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 81 -----VADADFIQES-APERE--ALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred -----hcCCCEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEEECC
Confidence 1456888775 22222 124578899999999997555443
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=7 Score=37.46 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=55.9
Q ss_pred EEEEecCCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH------cCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 187 EVLEIGCGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKE------AGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 187 ~VLDiGcG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~------~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+|.=||||. |. ++..+++ .|..|+.++.+++.++..++.-.. ..++.++.+. . |..+. ..+
T Consensus 2 kI~IiGaGa~G~ala~~L~~-~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~-~~~~~--------~~~ 70 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS-KKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-S-AIDEV--------LSD 70 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH-CCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-C-CHHHH--------HhC
Confidence 578899984 54 5555555 478899999888766655542100 0011112221 1 22111 114
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHh-ccccCceEEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCES-LLAENGLSCS 296 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~-~LkpgG~~~i 296 (381)
.+|+|+.. +++.+...+++++.. .++++..+++
T Consensus 71 ~~Dliiia-----vks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 71 NATCIILA-----VPTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred CCCEEEEE-----eCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 68988887 666667888888887 8887765443
|
|
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=83.38 E-value=3.2 Score=39.93 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~ 254 (381)
+...+.++.+||=.|+|. |..+..+++..|+ .+++++-+++..+.+.+. |.. . +. +..... .+.+..
T Consensus 168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~-~--v~---~~~~~~~~~~~~~ 237 (350)
T cd08256 168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKF----GAD-V--VL---NPPEVDVVEKIKE 237 (350)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHc----CCc-E--Ee---cCCCcCHHHHHHH
Confidence 455677888888888764 7777888888776 478888887766555432 331 1 11 111100 000000
Q ss_pred c-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 L-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
. ....+|+|+.. ++. ...+..+.+.|+++|+++.
T Consensus 238 ~~~~~~vdvvld~-----~g~---~~~~~~~~~~l~~~G~~v~ 272 (350)
T cd08256 238 LTGGYGCDIYIEA-----TGH---PSAVEQGLNMIRKLGRFVE 272 (350)
T ss_pred HhCCCCCCEEEEC-----CCC---hHHHHHHHHHhhcCCEEEE
Confidence 1 12458999875 432 2346778899999999654
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=83.34 E-value=3.1 Score=38.75 Aligned_cols=101 Identities=23% Similarity=0.210 Sum_probs=61.9
Q ss_pred HHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-
Q 047022 178 EKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE- 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~- 254 (381)
+...+.++.+||=.|+ | .|..+..+++..|.++++++.+++..+.+++ .|.. .+... +-.... +.+..
T Consensus 130 ~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~-~~~~~~-~~~~~~ 200 (320)
T cd05286 130 ETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGAD---HVINY-RDEDFV-ERVREI 200 (320)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCCC---EEEeC-CchhHH-HHHHHH
Confidence 3455678899999994 3 5788888888889999999998887776643 2331 11111 100100 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+|+.. ++. ..+..+.+.|+++|.++.
T Consensus 201 ~~~~~~d~vl~~-----~~~----~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 201 TGGRGVDVVYDG-----VGK----DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred cCCCCeeEEEEC-----CCc----HhHHHHHHhhccCcEEEE
Confidence 123469999875 321 245567788999999553
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.22 E-value=6.4 Score=37.08 Aligned_cols=88 Identities=20% Similarity=0.184 Sum_probs=55.2
Q ss_pred CEEEEecCCc--hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+|+=+|.|- |.++..+.++ ....+++.|.+....+.+.+. |+.+ ....+... . .....|+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~d----~~~~~~~~-~-------~~~~aD~ 67 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVID----ELTVAGLA-E-------AAAEADL 67 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Cccc----ccccchhh-h-------hcccCCE
Confidence 5788899885 5555555554 334578899888877666543 3321 11101101 1 2256899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
|+.. +|-.....+++++...|+||..+
T Consensus 68 Viva-----vPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 68 VIVA-----VPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred EEEe-----ccHHHHHHHHHHhcccCCCCCEE
Confidence 9887 55556688888888888888664
|
|
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=83.06 E-value=3 Score=41.03 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=37.9
Q ss_pred cCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHH
Q 047022 180 VKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEI 225 (381)
Q Consensus 180 l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~ 225 (381)
..+.++++||=.|+ | .|..+..+++..|+++++++.+++..+.+++
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 35678899999997 4 4788888888889999999999988887765
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.63 E-value=9.9 Score=35.81 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=56.6
Q ss_pred CEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc----------CC---------CCCeEEEEecCc
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA----------GL---------QDTSDYIFVITV 244 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~----------gl---------~~~i~~~~~~d~ 244 (381)
.+|.=||||. | .++..++. .|.+|+.+|.+++.++.+++++... +. ..++.+. . |.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~-~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-T-SY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-C-CH
Confidence 4788899995 3 44555555 4889999999999988776644321 11 0111111 1 22
Q ss_pred cccCcCCccccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEE
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~ 295 (381)
..+ ...|+|+.. ++.. ....+++++.+.++|+..++
T Consensus 81 ~~~----------~~aDlViea-----v~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 ESL----------SDADFIVEA-----VPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HHh----------CCCCEEEEc-----CcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 111 346888876 4322 24678888888888887654
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=82.38 E-value=11 Score=36.98 Aligned_cols=118 Identities=14% Similarity=0.211 Sum_probs=68.8
Q ss_pred HHHHHHcCCCCCCEEEEecCCchH----HHHHHHHhc----CCEEEEEcC----CHHHHHHHHHHH----HHcCCCCCeE
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGT----LAIEIVRQT----GCKYTGITL----SELQLKYAEIKV----KEAGLQDTSD 237 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~----~~~~la~~~----~~~v~gvDi----s~~~~~~a~~~~----~~~gl~~~i~ 237 (381)
+.|++.+.-.+.-+|+|+|.|.|. +...++.++ ..++|+|+. +...++.+.+++ +..|++ .+
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fe 177 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FE 177 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EE
Confidence 367777776777899999999885 444455542 258999999 776676666554 344654 44
Q ss_pred EEE---ecCccccCcCCccccCCCcccEEEEchhhHhhChh-----c-HHHHHHHHHhccccCceEEE
Q 047022 238 YIF---VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD-----Y-MEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 238 ~~~---~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~-----~-~~~~l~~~~~~LkpgG~~~i 296 (381)
|.. . +.+++.+..+. ...+..=+|-|...++|+.++ + ...+++. .+.|+|.-.+++
T Consensus 178 f~~v~~~-~~e~l~~~~l~-~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv~~ 242 (374)
T PF03514_consen 178 FHPVVVE-SLEDLDPSMLR-LRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVVLV 242 (374)
T ss_pred EEecccC-chhhCCHHHhC-ccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEEEE
Confidence 444 2 44444322211 122333344456677888632 2 2345554 457899955433
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=82.22 E-value=5.4 Score=36.31 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.5
Q ss_pred HHHHHHHHHhccccCceEEEE
Q 047022 277 MEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 277 ~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+++++.|+|||||.+++.
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 467889999999999987653
|
|
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=81.97 E-value=11 Score=35.98 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=61.8
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-c--CC
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-P--TN 251 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~--~~ 251 (381)
+....++++.+||=.|+|. |..+..+++..|++ +++++.+++..+.+++. +.. .+... +-.+.. . .-
T Consensus 154 ~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~i~~-~~~~~~~~~~~~ 225 (341)
T cd08262 154 VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAM----GAD---IVVDP-AADSPFAAWAAE 225 (341)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEEcC-CCcCHHHHHHHH
Confidence 3456678899999998764 67777778777875 78888888877766543 321 11111 100000 0 00
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
......+.+|+|+.. ++. ...+..+.+.|+++|.++..
T Consensus 226 ~~~~~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 226 LARAGGPKPAVIFEC-----VGA---PGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred HHHhCCCCCCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEE
Confidence 000123569999865 321 23566678889999996654
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.70 E-value=4.8 Score=33.83 Aligned_cols=52 Identities=6% Similarity=0.129 Sum_probs=32.6
Q ss_pred EecCCch--HHHHHHHH--h-cCCEEEEEcCCHHHHHHHHHH--HHHcCCCCCeEEEEe
Q 047022 190 EIGCGWG--TLAIEIVR--Q-TGCKYTGITLSELQLKYAEIK--VKEAGLQDTSDYIFV 241 (381)
Q Consensus 190 DiGcG~G--~~~~~la~--~-~~~~v~gvDis~~~~~~a~~~--~~~~gl~~~i~~~~~ 241 (381)
|||+..| .....+.. . ++.+|+++|++|...+..+++ +.-......+++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~ 59 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPY 59 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEe
Confidence 8999999 66655542 2 568999999999999998888 554433334666665
|
; PDB: 2PY6_A. |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=81.67 E-value=3.3 Score=39.02 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=59.0
Q ss_pred CCCCCCEEEEecCC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCccccCC
Q 047022 181 KLVKGQEVLEIGCG--WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTELFL 257 (381)
Q Consensus 181 ~~~~~~~VLDiGcG--~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~~~~ 257 (381)
.+.++.+||=.|++ .|..+..+++..|+++++++-+++..+.+++ .|...-+..... +. ..+. .....
T Consensus 135 ~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~-~~~~~~~----~~~~~ 205 (323)
T cd05282 135 KLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKA----LGADEVIDSSPE-DLAQRVK----EATGG 205 (323)
T ss_pred cCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHh----cCCCEEecccch-hHHHHHH----HHhcC
Confidence 45688999998873 5888888888889999999888877666643 233100011100 11 0010 00123
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+|+|+.. ++. . ....+.+.|+++|+++.
T Consensus 206 ~~~d~vl~~-----~g~---~-~~~~~~~~l~~~g~~v~ 235 (323)
T cd05282 206 AGARLALDA-----VGG---E-SATRLARSLRPGGTLVN 235 (323)
T ss_pred CCceEEEEC-----CCC---H-HHHHHHHhhCCCCEEEE
Confidence 469999876 332 1 23455688999999653
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=81.48 E-value=4.8 Score=37.36 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcH
Q 047022 199 AIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYM 277 (381)
Q Consensus 199 ~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~ 277 (381)
+..+.++ +..+|+|+|.++..++.|.+. |+.+ -... +...+ ..+|+|+.. +|....
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~-~~~~~----------~~~Dlvvla-----vP~~~~ 58 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GIID---EAST-DIEAV----------EDADLVVLA-----VPVSAI 58 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSS---EEES-HHHHG----------GCCSEEEE------S-HHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCee---eccC-CHhHh----------cCCCEEEEc-----CCHHHH
Confidence 4455554 348999999999988777654 4432 1222 21111 457999987 454556
Q ss_pred HHHHHHHHhccccCceEE
Q 047022 278 EELFSCCESLLAENGLSC 295 (381)
Q Consensus 278 ~~~l~~~~~~LkpgG~~~ 295 (381)
..+++++...+++|+.+.
T Consensus 59 ~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 59 EDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHHCGS-TTSEEE
T ss_pred HHHHHHhhhhcCCCcEEE
Confidence 788888888888877644
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=81.41 E-value=4.1 Score=38.40 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=63.1
Q ss_pred HHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.....+.++.+||=.|+ +.|..+..+++..|.++++++.+++..+.+++ .+.. .+... .-.... +.+..
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~-~~~~~~-~~~~~ 205 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA----LGAD---VAVDY-TRPDWP-DQVRE 205 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---EEEec-CCccHH-HHHHH
Confidence 44556778899999984 45888888888889999999988887776643 2331 11111 100100 00000
Q ss_pred -cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 -LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 -~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+|+.. ++. . ....+.+.|+++|.++.
T Consensus 206 ~~~~~~~d~vl~~-----~g~---~-~~~~~~~~l~~~g~~v~ 239 (324)
T cd08244 206 ALGGGGVTVVLDG-----VGG---A-IGRAALALLAPGGRFLT 239 (324)
T ss_pred HcCCCCceEEEEC-----CCh---H-hHHHHHHHhccCcEEEE
Confidence 122469999876 332 1 34677889999999654
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=81.23 E-value=11 Score=39.91 Aligned_cols=98 Identities=7% Similarity=-0.013 Sum_probs=62.5
Q ss_pred CCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
..+|+=+|||. |.......++.+.+++.+|.+++.++.+++. ...+..+ |..+.. -+.+..-++.|.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~G-Dat~~~--~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYG-DATRMD--LLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEE-eCCCHH--HHHhcCCCcCCEE
Confidence 35899999985 6555444444578999999999988887652 3567888 887653 1111123578888
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++. .++++.....-...+.+.|+-.++...
T Consensus 469 vv~-----~~d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 469 INA-----IDDPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred EEE-----eCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 876 443333344444555567776665544
|
|
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.19 E-value=13 Score=35.22 Aligned_cols=96 Identities=23% Similarity=0.262 Sum_probs=62.6
Q ss_pred HHcCCCCCCEEEEecCC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCG--WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG--~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
..+.+.++.+||=.|++ .|..+..+++..|.++++++.+++..+.+++. ...-+..+ . ....+. ..
T Consensus 156 ~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~-----~-~~~~v~-----~~ 223 (334)
T PRK13771 156 RRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS-----K-FSEEVK-----KI 223 (334)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch-----h-HHHHHH-----hc
Confidence 33467789999999983 58888888888899999999998888877553 21111100 1 111111 11
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+.+|+++.. .+. ..+..+.+.|+++|.++.
T Consensus 224 --~~~d~~ld~-----~g~----~~~~~~~~~l~~~G~~v~ 253 (334)
T PRK13771 224 --GGADIVIET-----VGT----PTLEESLRSLNMGGKIIQ 253 (334)
T ss_pred --CCCcEEEEc-----CCh----HHHHHHHHHHhcCCEEEE
Confidence 258988875 321 235677888999999554
|
|
| >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=81.19 E-value=8.5 Score=36.33 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=58.7
Q ss_pred HHHcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcC--CHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCc
Q 047022 177 IEKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITL--SELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNM 252 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDi--s~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l 252 (381)
.....+.++.+||-.|+| .|..+..+++..|.+++.+.. +.+..+.+++. |+. .+..... ++.+ +.
T Consensus 157 ~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~----g~~-~~~~~~~-~~~~~l~---- 226 (306)
T cd08258 157 AERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKEL----GAD-AVNGGEE-DLAELVN---- 226 (306)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHh----CCc-ccCCCcC-CHHHHHH----
Confidence 344566788888887765 477777888888888877643 33334433332 331 1111111 2111 10
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.......+|+++.. ++. ...+....+.|+++|.++..
T Consensus 227 ~~~~~~~vd~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 263 (306)
T cd08258 227 EITDGDGADVVIEC-----SGA---VPALEQALELLRKGGRIVQV 263 (306)
T ss_pred HHcCCCCCCEEEEC-----CCC---hHHHHHHHHHhhcCCEEEEE
Confidence 00123569999876 221 34667778889999996643
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=81.03 E-value=6 Score=41.56 Aligned_cols=99 Identities=7% Similarity=-0.046 Sum_probs=61.4
Q ss_pred CEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
.+|+=+|+|. |........+.+.+++.+|.+++.++.+++. ...+..+ |..+.. -+..-.-++.|.++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~G-Dat~~~--~L~~agi~~A~~vv 469 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYG-DATQLE--LLRAAGAEKAEAIV 469 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEe-eCCCHH--HHHhcCCccCCEEE
Confidence 4688777774 4443333333578999999999988877652 3567888 887642 11112236788888
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+. .++++.....-...+.+.|...++....+
T Consensus 470 ~~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 470 IT-----CNEPEDTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred EE-----eCCHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 86 44333333344445567788877765544
|
|
| >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.95 E-value=9.2 Score=36.32 Aligned_cols=95 Identities=24% Similarity=0.256 Sum_probs=58.5
Q ss_pred CCEEEEecC--CchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 185 GQEVLEIGC--GWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 185 ~~~VLDiGc--G~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+.+||=.|+ +.|..+..+++.. |++|++++-+++..+.+++ .|.. .+... + .... ..+.....+.+|
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~----~g~~---~~~~~-~-~~~~-~~i~~~~~~~vd 218 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE----LGAH---HVIDH-S-KPLK-AQLEKLGLEAVS 218 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH----cCCC---EEEEC-C-CCHH-HHHHHhcCCCCC
Confidence 889999885 4588888888876 8999999988887766643 2331 11211 1 0110 000011234699
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+.. ++. ...+..+.++|+++|+++..
T Consensus 219 ~vl~~-----~~~---~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 219 YVFSL-----THT---DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred EEEEc-----CCc---HHHHHHHHHHhccCCEEEEE
Confidence 98864 211 34466778899999996643
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=80.73 E-value=7.3 Score=34.41 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..|.+.+........+..||-+|+- ||.+...+..+ .++|+.+|+.|.+... ++.+++|... ..
T Consensus 30 ~~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~---~~-- 94 (254)
T COG4017 30 KKKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL---LK-- 94 (254)
T ss_pred HHHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh---cC--
Confidence 3444455544555677899999996 78888777765 8899999999986543 3445666654 11
Q ss_pred cCCccccCCCcccEEEEchhhHhh
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAV 272 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~ 272 (381)
+..+.+|+|+-.-.+.-+
T Consensus 95 ------~~~G~~DlivDlTGlGG~ 112 (254)
T COG4017 95 ------FIRGEVDLIVDLTGLGGI 112 (254)
T ss_pred ------CCCCceeEEEeccccCCC
Confidence 244889999987665555
|
|
| >cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
Probab=80.64 E-value=8 Score=30.05 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=42.8
Q ss_pred HHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 223 AEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 223 a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
.++.+...|++ +++... +..+.. .....||+|+.. .+....+.++.+.+.+.+.-+...+...
T Consensus 19 i~~~~~~~~~~--~~v~~~-~~~~~~------~~~~~~Diil~~--------Pqv~~~~~~i~~~~~~~~~pv~~I~~~~ 81 (96)
T cd05564 19 MKKAAEKRGID--AEIEAV-PESELE------EYIDDADVVLLG--------PQVRYMLDEVKKKAAEYGIPVAVIDMMD 81 (96)
T ss_pred HHHHHHHCCCc--eEEEEe-cHHHHH------HhcCCCCEEEEC--------hhHHHHHHHHHHHhccCCCcEEEcChHh
Confidence 45556666764 777777 766654 123679999986 3456667778877777777566666555
Q ss_pred CCC
Q 047022 303 YDE 305 (381)
Q Consensus 303 ~~~ 305 (381)
|..
T Consensus 82 Y~~ 84 (96)
T cd05564 82 YGM 84 (96)
T ss_pred ccc
Confidence 543
|
In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=80.53 E-value=6.4 Score=33.46 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=56.5
Q ss_pred EEEEecCCchHHHHH--HHHhcCCEEEEEcCCHHHHHHHHHHHHHc------CCCCCeEEEEecCccccCcCCccccCCC
Q 047022 187 EVLEIGCGWGTLAIE--IVRQTGCKYTGITLSELQLKYAEIKVKEA------GLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~--la~~~~~~v~gvDis~~~~~~a~~~~~~~------gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+|.-||+|.++.++. ++. .+.+|+..+.+++.++..++.-... .++.++.+ .. |..+.- .
T Consensus 1 KI~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~-dl~~a~---------~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TT-DLEEAL---------E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH-CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ES-SHHHHH---------T
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-cc-CHHHHh---------C
Confidence 467789996554443 344 4779999999998887776643211 11223332 23 443322 4
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..|+|+.. +|....+.+++++...|+++-.+++.
T Consensus 69 ~ad~Iiia-----vPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 69 DADIIIIA-----VPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp T-SEEEE------S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred cccEEEec-----ccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 56888876 66566788999999999666555543
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.47 E-value=17 Score=34.60 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=53.1
Q ss_pred EEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-CCC-----CCeEEEEecCccccCcCCccccCCC
Q 047022 187 EVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-GLQ-----DTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 187 ~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-gl~-----~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+|.=||+|. | .++..+++ .|..|+.++.++..++..++..... ... .++.. .. +..+.. .
T Consensus 3 kI~iiG~G~mG~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---------~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR-NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TT-DLAEAL---------A 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eC-CHHHHH---------h
Confidence 688889985 3 44445555 4789999999987766555431000 000 01111 11 221111 4
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
..|+|+.. ++......+++.+...++|+..++
T Consensus 71 ~~D~vi~~-----v~~~~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 71 DADLILVA-----VPSQALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred CCCEEEEe-----CCHHHHHHHHHHHHhhcCCCCEEE
Confidence 57998887 444456777888888888876543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=4.1 Score=41.20 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=57.9
Q ss_pred HHHHHHcCC-CCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKL-VKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~-~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+.+++.-+. -.|.+|+=+|+|+ |......++..|++|+++|.++.....+.. .| ++ .. +..++-
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~--~~-~leell--- 307 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQ--VV-TLEDVV--- 307 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----ce--ec-cHHHHH---
Confidence 344444322 3688999999997 555555555578999999888764322221 12 22 22 333332
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHH-HHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELF-SCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l-~~~~~~LkpgG~~~i~ 297 (381)
...|+|++. .+. ..++ .+....+|||++++-+
T Consensus 308 ------~~ADIVI~a-----tGt---~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 308 ------ETADIFVTA-----TGN---KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ------hcCCEEEEC-----CCc---ccccCHHHHhccCCCcEEEEc
Confidence 468999885 221 2234 4677889999996644
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=80.35 E-value=5.6 Score=32.68 Aligned_cols=88 Identities=7% Similarity=0.080 Sum_probs=45.8
Q ss_pred CCEEEEecCCch-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGWG-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
..+|+|+|-|.= ..+..+.+ .|..|+++|+.+. .+. ..+.+... |..+...+ --...|+|
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~-~G~dV~~tDi~~~-------~a~-----~g~~~v~D-Dif~P~l~-----iY~~a~lI 74 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKE-RGFDVIATDINPR-------KAP-----EGVNFVVD-DIFNPNLE-----IYEGADLI 74 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHH-HS-EEEEE-SS-S----------------STTEE----SSS--HH-----HHTTEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHH-cCCcEEEEECccc-------ccc-----cCcceeee-cccCCCHH-----HhcCCcEE
Confidence 349999999974 45555555 5899999999987 111 24678887 88764311 11568999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.|.. |+.++...+-++.+.+ |.-++|..
T Consensus 75 YSiR-----PP~El~~~il~lA~~v--~adlii~p 102 (127)
T PF03686_consen 75 YSIR-----PPPELQPPILELAKKV--GADLIIRP 102 (127)
T ss_dssp EEES-------TTSHHHHHHHHHHH--T-EEEEE-
T ss_pred EEeC-----CChHHhHHHHHHHHHh--CCCEEEEC
Confidence 9973 3334455555555433 33355543
|
; PDB: 2K4M_A. |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.30 E-value=23 Score=33.38 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=61.6
Q ss_pred cCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-cC
Q 047022 180 VKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE-LF 256 (381)
Q Consensus 180 l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~-~~ 256 (381)
..+.++.+||=.|+ +.|..+..+++..|++++.++-+++..+.+++ .|.. ..+... +..... +.+.. ..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~-~~~~~~-~~~~~~~~ 207 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK----LAAI--ILIRYP-DEEGFA-PKVKKLTG 207 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc--EEEecC-ChhHHH-HHHHHHhC
Confidence 45678899999884 46888888888889888888888887777743 2331 111111 110000 00000 12
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+|+++.. ++ ...+..+.+.|+++|.++.
T Consensus 208 ~~~~d~~i~~-----~~----~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 208 EKGVNLVLDC-----VG----GSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred CCCceEEEEC-----Cc----hHHHHHHHHHhccCCeEEE
Confidence 3568999875 22 2355677888999999654
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=80.26 E-value=11 Score=39.19 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=57.1
Q ss_pred CEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
.+|+=+|||. |.......++.+.+++.+|.+++.++.+++. ......+ |..+.. -+.+-.-++.|.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~G-D~~~~~--~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLG-NAANEE--IMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEc-CCCCHH--HHHhcCccccCEEE
Confidence 5788888875 4433333333578999999999987777642 3678888 887642 11112236789776
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+. .++++-...+-.+.+...|+..++...
T Consensus 487 v~-----~~~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 487 LT-----IPNGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred EE-----cCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 54 332222223333445566776655443
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.18 E-value=14 Score=35.13 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=55.0
Q ss_pred CEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-CC----------CCCeEEEEecCccccCcCCc
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-GL----------QDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-gl----------~~~i~~~~~~d~~~l~~~~l 252 (381)
.+|.=||+|. +.++..+++ .|.+|+++|.+++.++.+++..... +. ..++++ .. |..+..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~-~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR-KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EA-GLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eC-CHHHHh----
Confidence 4788899996 344455555 4889999999999888777643211 10 011221 12 322211
Q ss_pred cccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLS 294 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~ 294 (381)
...|+|+.. +++. ....++.++..+++++..+
T Consensus 78 -----~~aDlVi~a-----v~~~~~~~~~v~~~l~~~~~~~~ii 111 (311)
T PRK06130 78 -----SGADLVIEA-----VPEKLELKRDVFARLDGLCDPDTIF 111 (311)
T ss_pred -----ccCCEEEEe-----ccCcHHHHHHHHHHHHHhCCCCcEE
Confidence 457988876 4432 2466788888877766543
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=80.11 E-value=2.2 Score=44.01 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=30.9
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCH
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSE 217 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~ 217 (381)
+.++..|||+||.+|++..-+++. .+.-|+|+|+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 457889999999999999988887 466899999865
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 381 | ||||
| 1tpy_A | 287 | Structure Of The Cyclopropane Synthase Mmaa2 From M | 1e-20 | ||
| 1kp9_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 2e-18 | ||
| 1kpg_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 3e-18 | ||
| 1kpi_A | 302 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 6e-17 | ||
| 1l1e_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 7e-15 | ||
| 2fk7_A | 318 | Crystal Structure Of Hma (Mmaa4) From Mycobacterium | 1e-14 |
| >pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From Mycobacterium Tuberculosis Length = 287 | Back alignment and structure |
|
| >pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1, Apo-Form Length = 287 | Back alignment and structure |
|
| >pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1 Complexed With Sah And Ctab Length = 287 | Back alignment and structure |
|
| >pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa2 Complexed With Sah And Dddmab Length = 302 | Back alignment and structure |
|
| >pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Pcaa Complexed With S-Adenosyl-L-Homocysteine Length = 287 | Back alignment and structure |
|
| >pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium Tuberculosis, Apo- Form Length = 318 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 381 | |||
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 5e-79 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 1e-77 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 4e-71 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 5e-49 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 2e-36 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 2e-35 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 3e-35 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 3e-27 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 2e-15 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 3e-11 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 4e-11 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 2e-10 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 3e-10 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 3e-09 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 2e-08 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 2e-08 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 3e-08 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 3e-08 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 4e-08 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 5e-08 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 1e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 2e-07 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 2e-07 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 2e-07 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 2e-07 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 2e-07 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 3e-07 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 7e-07 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 2e-06 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 2e-06 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 2e-06 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 2e-06 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 4e-06 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 5e-06 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 6e-06 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 7e-06 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 7e-06 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 7e-06 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 1e-05 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 1e-05 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 1e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 2e-05 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-05 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 2e-05 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 2e-05 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 3e-05 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 3e-05 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 4e-05 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 5e-05 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 5e-05 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 6e-05 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 9e-05 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 1e-04 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 2e-04 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 2e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 3e-04 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 4e-04 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 5e-04 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 5e-04 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 5e-04 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 5e-04 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 7e-04 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 9e-04 |
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 5e-79
Identities = 62/286 (21%), Positives = 98/286 (34%), Gaps = 35/286 (12%)
Query: 112 KYFFRHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIR 171
+ + YD S++ FF LF D + TYSCA F+ LE Q
Sbjct: 19 SHMAEKPISPTKTRTRFEDIQAHYDVSDD-FFALFQDPTRTYSCAYFEPPELTLEEAQYA 77
Query: 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG 231
KV + ++K+ L G +L+IGCGWGT V + G+TLS+ Q E +
Sbjct: 78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASID 137
Query: 232 LQDT-----SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCES 286
+ + E F + E GH+ ++ F C +
Sbjct: 138 TNRSRQVLLQGW---------------EDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFN 182
Query: 287 LLAENGLS---CSTVPDQCYDEHSLGPG---------FIKEYIFPSGCLPSLRRVTSAMT 334
++ +G S FI IFP G LPS +
Sbjct: 183 IMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHG- 241
Query: 335 SSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
+ V ++ HY + LR W + + + + E+
Sbjct: 242 EKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTS-EEVYN 286
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 240 bits (614), Expect = 1e-77
Identities = 69/276 (25%), Positives = 112/276 (40%), Gaps = 35/276 (12%)
Query: 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVK 181
+ L +V YD S++ FF LFLD + TYSCA F+ L+ QI K+ + + K+
Sbjct: 3 DELKPHFANVQAHYDLSDD-FFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLG 61
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT-----S 236
L G +L++GCGWG + V + G+TLS+ Q + + V + + +
Sbjct: 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA 121
Query: 237 DYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLS-- 294
+ E F + G E GH+ + FS LL +G+
Sbjct: 122 GW---------------EQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 166
Query: 295 -CSTVPDQCYDEHSLGPG---------FIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHL 344
T P FI IFP G LPS+ V S++ V +
Sbjct: 167 HTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECA-SANGFTVTRV 225
Query: 345 ENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
++++ HY + L W + + +AL +E+
Sbjct: 226 QSLQPHYAKTLDLWSAALQANKGQAIAL-QSEEVYE 260
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 4e-71
Identities = 72/289 (24%), Positives = 105/289 (36%), Gaps = 42/289 (14%)
Query: 116 RHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSV 175
+ L V YD SNE FF L+LD SMTYSCA F+ LE Q K +
Sbjct: 5 GDTTSGTQLKPPVEAVRSHYDKSNE-FFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKL 63
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT 235
++K+ L G +L+IGCGWG+ V + G+TLSE Q + + E
Sbjct: 64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRR 123
Query: 236 -----SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEA-------VGHDYMEELFSC 283
+ E F + G E G + + F
Sbjct: 124 KEVRIQGW---------------EEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKK 168
Query: 284 CESLLAENGLS---CSTVPDQCYDEHSLGPG---------FIKEYIFPSGCLPSLRRVTS 331
+L ++G T+PD+ + FI IFP G LP + +V
Sbjct: 169 FYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDY 228
Query: 332 AMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
S++ VE I +Y L W + E +AL ++
Sbjct: 229 YS-SNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAIAL-KGQETCD 275
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 5e-49
Identities = 41/282 (14%), Positives = 85/282 (30%), Gaps = 36/282 (12%)
Query: 107 PKKTKKYFFRHISRKNTLTQARRHVSRL-YDPSNELFFFLFLDKSMTYSCAIFKSKHEDL 165
+ +Y+ N + Y D + ++ L
Sbjct: 42 QEDIARYWNNEARPVNLRLGDVDGLYHHHYGIGPV-DRAALGDPEHSEYEKKVIAELHRL 100
Query: 166 EVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEI 225
E Q + + + +++ GCG G + R+ G + G+TLS Q +
Sbjct: 101 ESAQAEFLMDHLGQAG--PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNR 158
Query: 226 KVKEAGLQDT-----SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEEL 280
+ +E + D + + G + E+ + + +L
Sbjct: 159 RARELRIDDHVRSRVCNM-----------LDTPFDK-GAVTAS---WNNESTMYVDLHDL 203
Query: 281 FSCCESLLAENG--LSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSR 338
FS L G ++ + + Y + S I + + + S R AM + +R
Sbjct: 204 FSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECN--IHSRREYLRAM-ADNR 260
Query: 339 LCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
L + ++ L W + L G + F+
Sbjct: 261 LVPHTIVDLTPDT---LPYWELRATSS----LVTGIEKAFIE 295
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-36
Identities = 34/232 (14%), Positives = 70/232 (30%), Gaps = 34/232 (14%)
Query: 147 LDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT 206
+D ++ + +S+H K + L +++ G +L++G G G + R
Sbjct: 1 MDIPRIFTIS--ESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH 58
Query: 207 GCKYTGITLSELQLKYAEIKVKEAGLQD-----TSDYIFVITVNCLKPTNMTELFLGNFS 261
G TGI +S L A+ + +E G+ + +D +
Sbjct: 59 GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA-------------AGYVANEKCD 105
Query: 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKE--YIFP 319
G G L G+ + Y I + +
Sbjct: 106 VAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIG---EPYWRQLPATEEIAQACGVSS 160
Query: 320 SGCLPSLRRVTSAMTSS----SRLCVEHLENIETHYYQK---LRRWRQKFRE 364
+ +L + A + + E + + K +RRW + +
Sbjct: 161 TSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPD 212
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-35
Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 15/253 (5%)
Query: 131 VSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLE 190
V ++YD + F +++ + ++ R +I + + G VL+
Sbjct: 9 VRQMYDDFTD-PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLD 67
Query: 191 IGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250
+GCG G A+ + + TGI++S Q+ A + AGL + +T +
Sbjct: 68 VGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANR------VTFSYADAM 121
Query: 251 NMTELFL-GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLG 309
++ F +F V+ + + +L G
Sbjct: 122 DLP--FEDASFDAVWALESLHHMPD--RGRALREMARVLRPGGTVAIADFVLLAPVEGAK 177
Query: 310 PGFIKEYIFPSGC--LPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHS 367
+ + G L + S + + L V +I L + + F S
Sbjct: 178 KEAVDAFRAGGGVLSLGGIDEYESDVRQAE-LVVTSTVDISAQARPSLVKTAEAFENARS 236
Query: 368 EILALGFNEKFVR 380
++ E R
Sbjct: 237 QVEPFMGAEGLDR 249
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 3e-35
Identities = 44/267 (16%), Positives = 86/267 (32%), Gaps = 31/267 (11%)
Query: 116 RHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSV 175
I N+ + ++ D + + ++ + G +
Sbjct: 2 TLIENLNS-DKTFLENNQYTDEGVK-VYEFIFGENY-------------ISSGGLEATKK 46
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT 235
++ ++L + +VL+IG G G + I + G GI + + A + +
Sbjct: 47 ILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMAN---ERVSGNNK 103
Query: 236 SDYIFVITVNCLKPTNMTELFLGN-FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLS 294
I F N F ++ I A+ + +LF C L G
Sbjct: 104 ------IIFEANDILTKE--FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTL 155
Query: 295 CSTVPDQCYDEHSLGPGFIKEYIFPSG-CLPSLRRVTSAMTSSSRLCVEHLENIETHYYQ 353
T D C E KEY+ L ++ +T+ + +++ ++ Q
Sbjct: 156 LIT--DYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACN-FKNVVSKDLSDYWNQ 212
Query: 354 KLRRWRQKFREKHSEILALGFNEKFVR 380
L + E E L L +KF+
Sbjct: 213 LLEVEHKYLHENKEEFLKLFSEKKFIS 239
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-27
Identities = 44/272 (16%), Positives = 91/272 (33%), Gaps = 26/272 (9%)
Query: 122 NTLTQARRHVSRLYDP--SNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEK 179
T + + YD S+ +F ++ + + +++ +R L +
Sbjct: 14 ATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASE 73
Query: 180 V----KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT 235
+ L + + L++G G+G A +VR+ G + ++ +Q K E +AGL D
Sbjct: 74 LAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADN 133
Query: 236 SDYIFVITVNCLKPTNMTELFLGN-FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLS 294
ITV + N + ++ ++F C +L G+
Sbjct: 134 ------ITVKYGSFLEIP--CEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVM 183
Query: 295 CST--VPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYY 352
T + + D+ S+ P + + SL S L +
Sbjct: 184 AITDPMKEDGIDKSSIQP-ILDRIKLHD--MGSLGLYRSLA-KECGLVTLRTFSRPDSLV 239
Query: 353 QKLRRWRQKFREKHSEILALG---FNEKFVRT 381
+ + + ++ SEI + F R
Sbjct: 240 HHYSKVKAELIKRSSEIASFCSPEFQANMKRG 271
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 2e-15
Identities = 34/225 (15%), Positives = 64/225 (28%), Gaps = 20/225 (8%)
Query: 148 DKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG 207
D ++ C FK + +L ++ +IGCG G + +
Sbjct: 10 DFDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK 69
Query: 208 CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL--GNFSTVFI 265
+ TGI L ++ +A D I +M L ++
Sbjct: 70 GQITGIDLFPDFIEIFNENAVKANCADRVKGITG---------SMDNLPFQNEELDLIWS 120
Query: 266 CGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPS 325
G I +G E + L + G V + + ++ +
Sbjct: 121 EGAIYNIG---FERGMNEWSKYLKKGGFIA--VSEASWFTSERPAEIEDFWMDAYPEISV 175
Query: 326 LRRVTSAMTSSSRLCVEHLENIET----HYYQKLRRWRQKFREKH 366
+ M + H E HY+ R+ F ++H
Sbjct: 176 IPTCIDKMERAGYTPTAHFILPENCWTEHYFAPQDEVRETFMKEH 220
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 3e-11
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
+ + VL+ G G + I + G K GI +S+LQLK AE +E +
Sbjct: 20 ESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK 72
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 4e-11
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
L + + +IGCG G + + + TG+ + +++GLQ+
Sbjct: 43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN 96
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT 235
+I + + ++IG G G L+I + +Q+ + S+ + A + +A L D
Sbjct: 36 IINRFGI-TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDR 94
Query: 236 SDYI 239
+
Sbjct: 95 IQIV 98
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 3e-10
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 182 LVKGQEVLEIGCGWG--TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
L G V + CGW LA++ G + GI L A L
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG 170
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 3e-09
Identities = 17/123 (13%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQD 234
++ +K + V+++GCG G L +++ + + TG+ +S L+ A+ ++ L
Sbjct: 21 VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR 80
Query: 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLS 294
+ L + + + +IE + + +
Sbjct: 81 NQWERLQLIQGAL---TYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVI 137
Query: 295 CST 297
+T
Sbjct: 138 VTT 140
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-08
Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV 244
+++ CG GT + + + G+ +S+ L+ A + A + +
Sbjct: 57 ELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENTAANIS-------YRLL 108
Query: 245 NCLKPTNMTELFLGNFS-TVFICGMIEAVGHDYMEELFSCCESLLAENG 292
+ L P ++ +++ + + E L LL + G
Sbjct: 109 DGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQG 157
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-08
Identities = 20/124 (16%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Query: 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDT 235
+ +K V ++V+++GCG G L +++ + TG+ +S L+ A+ ++K L +
Sbjct: 22 VAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM 81
Query: 236 SDYIFVITVNCLKPTNMTEL--FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293
L +++ + + +IE + + ++ +
Sbjct: 82 QRKRI-----SLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTV 136
Query: 294 SCST 297
ST
Sbjct: 137 IVST 140
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 3e-08
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIF 240
+ VL+IGCG G +E+ ++ G + G+ ++E +K+ E K
Sbjct: 38 YFKGCRRVLDIGCGRGEF-LELCKEEGIESIGVDINEDMIKFCEGKFN------------ 84
Query: 241 VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300
V+ + ++ + L V I +E + + + EL S C S + + P+
Sbjct: 85 VVKSDAIE--YLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN 142
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 3e-08
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
+ K +VL++ CG G + + G + G+ +SE ++ A K
Sbjct: 35 YMKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESN 86
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 4e-08
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 131 VSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLE 190
+ + D +L + + ++ Q + E ++ G+++LE
Sbjct: 2 MEKRLDYITDL-----------MALGPTANAR-TIQRRQTAHRLAIAEAWQVKPGEKILE 49
Query: 191 IGCGWGTLAIEIVRQTG--CKYTGITLSE------LQLKYAEIKVKEAGLQDTSDYIFV 241
IGCG G L+ + Q G TGI ++ L L A + L D F
Sbjct: 50 IGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN 108
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 5e-08
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKY-TGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242
+G +L++G L IE+V + K + E + A V+ GL+ + I V
Sbjct: 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK---EKIQVR 71
Query: 243 TVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG 292
N L T+ S + I GM G + + LA
Sbjct: 72 LANGLAAFEETD----QVSVITIAGM----GGRLIARILEEGLGKLANVE 113
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-07
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGL 232
+L G +VLE GCG G + + + + T I +S L+ A ++ G+
Sbjct: 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI 86
Query: 233 QD 234
++
Sbjct: 87 KN 88
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-07
Identities = 66/447 (14%), Positives = 121/447 (27%), Gaps = 170/447 (38%)
Query: 30 TLKTILRIHNPHFYWNVMIEADLG-----LADSYINGDFSFVHKYEGLLNLFPIVIANQD 84
L+ L P V+I+ LG +A + K + +F + + N +
Sbjct: 139 KLRQALLELRPAKN--VLIDGVLGSGKTWVALDVCL-SYKVQCKMDF--KIFWLNLKNCN 193
Query: 85 LDSS----------------TSKLKKSWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQAR 128
+ TS+ S ++ + + + +N L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCL---- 247
Query: 129 RHVSRLYDPSNELFFFLFLD--------KSMTYSCAI-----FKSKHEDLEVGQIRKVSV 175
L L + SC I FK + L +S+
Sbjct: 248 ----------------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQ--------LKYAEIKV 227
+ L EV + L KY +L + + I
Sbjct: 292 DHHSMTLTPD-EVKSL------LL---------KYLDCRPQDLPREVLTTNPRRLSIIA- 334
Query: 228 KEAGLQD---TSDY-----------IFVITVNCLKPTNMTELF--LGNF-STVFI----- 265
++D T D I ++N L+P ++F L F + I
Sbjct: 335 --ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 266 ----CGMIEAVGHDYMEELFSCCESLLAENGLSCS-TVPD-------------------- 300
+I++ + +L SL+ + + ++P
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 301 ------QCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE-THYYQ 353
+ +D L P ++ +Y + S + HL+NIE
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFY------------------SHI-GHHLKNIEHPERMT 491
Query: 354 KLR------RW-RQKFREKHSEILALG 373
R R+ QK R + A G
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASG 518
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 7e-06
Identities = 59/381 (15%), Positives = 106/381 (27%), Gaps = 104/381 (27%)
Query: 67 HKYEGLLNLF-PIVIANQD----LDSSTSKLKKS------WGPSQNTS-----WL---KP 107
++Y+ +L++F + N D D S L K + W K
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 108 KKTKKYFFRHISRKNT--LTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDL 165
++ + F + R N L + R PS ++ + +F +
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQR--QPSMMTRMYIEQRDRLYNDNQVFAKYN--- 130
Query: 166 EVGQIRKVSVLIEKVKLVKGQEVLEI----GCGWGTLAIEIVRQTG-------------- 207
V +++ L + + ++ + + I G G +A+++
Sbjct: 131 -VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 208 --CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT----------------VNCLKP 249
C L LQ +I D S I + NCL
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-- 247
Query: 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLL------AENGLSCSTVPDQCY 303
L L N V A C+ LL + LS +T
Sbjct: 248 -----LVLLN---VQNAKAWNAFNLS--------CKILLTTRFKQVTDFLSAATTTHISL 291
Query: 304 DEHSLGPGFIKEY---IF------PSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQK 354
D HS + + LP T+ S + E + + +
Sbjct: 292 DHHS--MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIRDGLATW--- 344
Query: 355 LRRWRQKFREKHSEILALGFN 375
W+ +K + I+ N
Sbjct: 345 -DNWKHVNCDKLTTIIESSLN 364
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 4e-04
Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 37/146 (25%)
Query: 32 KTIL---RIHNPHFYWNVMIEADLGLADSYINGDFSFV--H----KYEGLLNLFPIVIAN 82
++I+ I +++ D Y +S + H ++ + LF +V
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYL----DQYF---YSHIGHHLKNIEHPERMTLFRMVF-- 497
Query: 83 QDLDSSTSKLKKSWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQAR---RHVSRLYDPSN 139
D K++ +T+W S NTL Q + ++ DP
Sbjct: 498 LDFRFLEQKIRHD-----STAWNASG----------SILNTLQQLKFYKPYICD-NDPKY 541
Query: 140 ELFFFLFLDKSMTYSCAIFKSKHEDL 165
E LD + SK+ DL
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDL 567
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 2e-07
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 173 VSVLIEKV-KLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKE 229
VS L+ V K+ K +++ GCG+G L + ++ G KYTGI E L A +
Sbjct: 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69
Query: 230 AGLQ 233
Sbjct: 70 LPYD 73
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 24/112 (21%), Positives = 35/112 (31%), Gaps = 10/112 (8%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT 243
VLE+ G G L + G + T + LS L ++ EA V
Sbjct: 82 VSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQ- 139
Query: 244 VNCLKPTNMTEL-FLGNFSTVFI-CGMIEAVGHDYMEELFSCCESLLAENGL 293
+M+ F TV I G I + L++ L G
Sbjct: 140 ------GDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGK 185
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-07
Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 8/124 (6%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT 235
L+ ++ VL++ CG G +I +V + G T + S+ LKYA + +
Sbjct: 49 LLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPA 107
Query: 236 SDYIFVITVNCLKPTNMTELFLGNFSTVFICG------MIEAVGHDYMEELFSCCESLLA 289
D + N L + F V G S++
Sbjct: 108 FDKWVIEEANWL-TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR 166
Query: 290 ENGL 293
GL
Sbjct: 167 PGGL 170
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 17/132 (12%), Positives = 44/132 (33%), Gaps = 15/132 (11%)
Query: 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVK 228
+ ++ + +LE+G G +++ T + SE + +A+ ++K
Sbjct: 27 DVMHPFMVRAFTPFFRPGNLLELGSFKGDFT-SRLQEHFNDITCVEASEEAISHAQGRLK 85
Query: 229 EAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLL 288
+ + + + + + ++E + D + L + L
Sbjct: 86 DG-------------ITYIHSRFEDAQLPRRYDNIVLTHVLEHI-DDPVALLKRINDDWL 131
Query: 289 AENGLSCSTVPD 300
AE G P+
Sbjct: 132 AEGGRLFLVCPN 143
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 17/124 (13%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT 235
L++ +K + +EVL+IGC G L +++ G + +GI + A+ K+ L D
Sbjct: 25 LLKHIKK-EWKEVLDIGCSSGALG-AAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDI 82
Query: 236 SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295
F V ++E + D + + + +NG+
Sbjct: 83 ETMDMPYE-------------EEQFDCVIFGDVLEHL-FDP-WAVIEKVKPYIKQNGVIL 127
Query: 296 STVP 299
+++P
Sbjct: 128 ASIP 131
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 3e-07
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKY-TGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242
K + + +IG L V+ + + + + A+ +V+ +GL + I V
Sbjct: 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT---EQIDVR 77
Query: 243 TVNCLKPTNMTELFLGNFSTVFICGM 268
N L + T+ I GM
Sbjct: 78 KGNGLAVIEKKD----AIDTIVIAGM 99
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 7e-07
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 19/142 (13%)
Query: 156 AIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITL 215
I++ + E ++ +I V + ++ + + VL++ CG G +E+ + G + G+ L
Sbjct: 14 TIYRRRIERVK-AEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDL 71
Query: 216 SELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN-FSTVFICGMIEAVGH 274
E L+ A K KE L+ + L+ ++ E+ N F V + + +
Sbjct: 72 HEEMLRVARRKAKERNLK----------IEFLQ-GDVLEIAFKNEFDAVTMFF--STIMY 118
Query: 275 DYMEEL---FSCCESLLAENGL 293
E+L FS L G+
Sbjct: 119 FDEEDLRKLFSKVAEALKPGGV 140
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQ 233
+ + ++L++G G G L+ ++ + +T + +SE L+ A+ + +
Sbjct: 35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG---- 90
Query: 234 DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293
+ + I + K F + V I + + +EL+ S+L E+G+
Sbjct: 91 --NLKVKYIEADYSKYD-----FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGI 143
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 20/118 (16%)
Query: 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIF 240
++ G+ + +IGCG GT + + + TG+ LSE L+ A+ K E
Sbjct: 30 QVEPGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNRH------- 80
Query: 241 VITVNCLKPTNMTEL-FLGNFSTVFICGMIEAVGH----DYMEELFSCCESLLAENGL 293
+ +M EL + I +++ + +++ F LL + G
Sbjct: 81 -VDFWVQ---DMRELELPEPVDAITILC--DSLNYLQTEADVKQTFDSAARLLTDGGK 132
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKY-TGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242
KG +L++G L I +++ C + + + A V E GL I V
Sbjct: 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT---SKIDVR 77
Query: 243 TVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG 292
N L + N T+ ICGM G + ++ + L
Sbjct: 78 LANGLSAFEEAD----NIDTITICGM----GGRLIADILNNDIDKLQHVK 119
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} Length = 261 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 2e-06
Identities = 32/207 (15%), Positives = 54/207 (26%), Gaps = 43/207 (20%)
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241
+V G V IG L + + + G T S+ L D I +
Sbjct: 43 IVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLA-----EALADRCVTIDL 96
Query: 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG--------- 292
+ + P G+F V +I EE C +L+ G
Sbjct: 97 LDITAEIPKE----LAGHFDFVLNDRLINRFTT---EEARRACLGMLSLVGSGTVRASVK 149
Query: 293 -------------------LSCSTVPDQCYDEHSLGPGFIKEYIFPSGCL--PSLRRVTS 331
L+ P + + P G + P+L
Sbjct: 150 LGFYDIDLKLIEYGEQSGTLAKFFDPSDKTFHFREAGDVLDRALVPHGLIDKPTLLEWYR 209
Query: 332 AMTSSSRLCVEHLENIETHYYQKLRRW 358
+R E + + +H R +
Sbjct: 210 RRGKETRFDDEDVRALLSHDVVNARGY 236
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 4e-06
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL 232
V G ++++GCG+G G+ LSE L A + G+
Sbjct: 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGI 91
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 18/113 (15%)
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241
L G ++LE+GCG G A ++ G S A ++
Sbjct: 41 LPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRLGRPVRTML------ 93
Query: 242 ITVNCLKPTNMTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293
+L + + V+ + V D + ++ L GL
Sbjct: 94 ----------FHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGL 136
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242
+ + L++ CG G L + + + LS+ L AE K + GL+
Sbjct: 36 LVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGLK--------P 86
Query: 243 TVNCLKPTNMTEL-FLGNFSTVFICGMIEAVGH----DYMEELFSCCESLLAENGL 293
+ C +++ L F + C ++ + D +++ F + L E G+
Sbjct: 87 RLACQ---DISNLNINRKFDLITCCL--DSTNYIIDSDDLKKYFKAVSNHLKEGGV 137
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-06
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA 230
R + + + K EVL++GCG G ++ R G K G+ +SE+ ++ + + +
Sbjct: 40 RSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERGEGP 98
Query: 231 GLQ 233
L
Sbjct: 99 DLS 101
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 7e-06
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVK 228
+ + + + K +++ GCG G ++ K I ++ + LK + K
Sbjct: 2 SLERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD 60
Query: 229 EA-------GLQDTS-DYIFVITV 244
+ D S D+I
Sbjct: 61 SVITLSDPKEIPDNSVDFILFANS 84
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 7e-06
Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 13/126 (10%)
Query: 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVK 228
+ R +L + LEIGC G ++ + T I + + A + K
Sbjct: 36 RERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTK 94
Query: 229 EAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH-DYMEELFSCCESL 287
++ + F + + ++ + M +
Sbjct: 95 RWS-----------HISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKM 143
Query: 288 LAENGL 293
LA G
Sbjct: 144 LAPGGH 149
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 17/147 (11%), Positives = 47/147 (31%), Gaps = 13/147 (8%)
Query: 148 DKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG 207
D T K + + +++ K++ +VL++GCG G ++ + G
Sbjct: 84 DLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL-G 142
Query: 208 CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL-GNFSTVFIC 266
T +E + + ++ L I+ ++ + N+ +
Sbjct: 143 YDVTSWDHNENSIAFLNETKEKENLN--------ISTAL---YDINAANIQENYDFIVST 191
Query: 267 GMIEAVGHDYMEELFSCCESLLAENGL 293
+ + + + + + G
Sbjct: 192 VVFMFLNRERVPSIIKNMKEHTNVGGY 218
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
L + + + VL++GCG+G I K GI LSE L A+ K +
Sbjct: 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVC 93
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-05
Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL 232
L VLE GCG G A Q ++ S LK A A +
Sbjct: 46 LTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANAPHADV 95
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 27/148 (18%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT 235
++ + + + VL++GCG G L + + G + G+ + A + AG +
Sbjct: 44 ILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAA----RAAGAGEV 98
Query: 236 SDYIFVITVNCLKPTNMTELFLGN-FSTVFICGMIEAVGHDYMEELFSCCESLLAENG-L 293
+ ++ +G + + A+ H + EL S +LL G L
Sbjct: 99 HLASYA-------QLAEAKVPVGKDYDLIC---ANFALLHQDIIELLSAMRTLLVPGGAL 148
Query: 294 SCSTVPDQCYDEHSLGPGFIKEYIFPSG 321
T L P + + + G
Sbjct: 149 VIQT----------LHPWSVADGDYQDG 166
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA 230
+G ++L+ GCG G + + +Q G G L + + YA+ EA
Sbjct: 46 RGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFPEA 91
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 29/145 (20%)
Query: 156 AIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITL 215
+ + +D + ++ L+ + + +L++ CG GT ++ G+ L
Sbjct: 14 LFYLGRGKDYA-AEASDIADLVRS-RTPEASSLLDVACGTGTHLEHFTKE-FGDTAGLEL 70
Query: 216 SELQLKYAEIKVKEAGL--QDTSDYIFVITVNCLKPTNMTELFLGN-FSTVFICGMIEAV 272
SE L +A ++ +A L D M + LG FS V +V
Sbjct: 71 SEDMLTHARKRLPDATLHQGD-----------------MRDFRLGRKFSAVVSMF--SSV 111
Query: 273 GH----DYMEELFSCCESLLAENGL 293
G+ + + + L G+
Sbjct: 112 GYLKTTEELGAAVASFAEHLEPGGV 136
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTS 236
+ E+L+IGCG G +++E+ + G TGI ++ ++ AE + GL +
Sbjct: 30 EDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKT 81
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 12/120 (10%)
Query: 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
S ++E VK+VK + L++GCG G ++ + G + + + E L
Sbjct: 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLD 80
Query: 234 DTSDYIFVITVNCLKPTNMTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG 292
+ + ++ L F + + ++ + + L + + G
Sbjct: 81 N-------LHTRV---VDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGG 130
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 3e-05
Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 4/123 (3%)
Query: 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC--KYTGITLSELQLKYAEIKVKEAGLQD 234
++ ++ +++ GCG G+L ++ G+ +S L A + ++
Sbjct: 714 LKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE 773
Query: 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLS 294
+ + + L + +IE + D E SL L
Sbjct: 774 ACNVKSATLYDGS--ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLI 831
Query: 295 CST 297
ST
Sbjct: 832 VST 834
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 20/159 (12%)
Query: 143 FFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQ-EVLEIGCGWGTLAIE 201
F FL+ S ++H+ ++ +K+ +I ++ K + ++L IG G G + ++
Sbjct: 19 FRRFLNHS---------TEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQ 69
Query: 202 IVRQ-------TGCKYTGITLSELQLKYAEIKV-KEAGLQDTSDYIFVITVNCLKPTNMT 253
I+ + + S Q+ + V K + L++ T + + +
Sbjct: 70 ILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129
Query: 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG 292
+ L + + + M+ V D + SLL N
Sbjct: 130 KKELQKWDFIHMIQMLYYV-KD-IPATLKFFHSLLGTNA 166
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 5e-05
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL 232
+ ++I+ + VL+IG G G A+ + G+ ++ ++ A +E G+
Sbjct: 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV 68
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 5e-05
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 7/146 (4%)
Query: 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
+ LI +G VL++GCG G ++ R +Y G+ ++E+ + A ++ + +
Sbjct: 55 ACLIRLY-TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 113
Query: 234 DTSDYIFV-ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG 292
+ + ++ FS + E ++ L G
Sbjct: 114 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSE-----SLDIAQRNIARHLRPGG 168
Query: 293 LSCSTVPDQCYDEHSLGPGFIKEYIF 318
TVP + G + +
Sbjct: 169 YFIMTVPSRDVILERYKQGRMSNDFY 194
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 6e-05
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA 230
++E V VLE G G G L +++ G GI S A+ K+ +
Sbjct: 37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLPKE 90
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 9e-05
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 91 KLKKSWGPSQNTSWLKPKKTKKYFFRHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKS 150
+ + W + L + RHI L Q H + N F
Sbjct: 102 SIHQLWKGTTQPMKLN-TRPSTGLLRHI-----LQQVYNHSVTDPEKLNNYEPF----SP 151
Query: 151 MTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKY 210
Y F V+ +I+++K+ +++G G G + +++ T CK+
Sbjct: 152 EVYGETSFDL------------VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKH 199
Query: 211 -TGITLSELQLKYAEIKVKEA 230
G+ +++ KYAE +E
Sbjct: 200 HYGVEKADIPAKYAETMDREF 220
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 30/147 (20%)
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL--QDTSDYI 239
K +L++ CG G + G+ LS L A + +A L D
Sbjct: 48 SPKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNPDAVLHHGD----- 101
Query: 240 FVITVNCLKPTNMTELFLGN-FSTVFICGMIEAVGH----DYMEELFSCCESLLAENGLS 294
M + LG FS V ++GH ++ + + +G+
Sbjct: 102 ------------MRDFSLGRRFSAVTCMF--SSIGHLAGQAELDAALERFAAHVLPDGV- 146
Query: 295 CSTVPDQCYDEHSLGPGFIKEYIFPSG 321
V + + + PG++ +G
Sbjct: 147 --VVVEPWWFPENFTPGYVAAGTVEAG 171
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 15/123 (12%)
Query: 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE 229
+R + + + K +++GCG G + +E+ + + I + + E+ ++
Sbjct: 21 VRCLI--MCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQR 77
Query: 230 AGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLA 289
GL D V + P + + + + + G ++E+ + L
Sbjct: 78 HGLGDN-----VTLMEGDAPEALCK--IPDIDIAVVGG-----SGGELQEILRIIKDKLK 125
Query: 290 ENG 292
G
Sbjct: 126 PGG 128
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 2e-04
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTL-AIEIVRQTGCKYTGITLSELQLKYAEIKVK 228
+ + + +G+ + IG G L I + G + + + + + ++
Sbjct: 108 LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE 167
Query: 229 EAGLQD 234
G+
Sbjct: 168 GLGVDG 173
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 10/132 (7%)
Query: 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
L E L+ G G G + ++ + + ++E L A+ + E G +
Sbjct: 69 RFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR 128
Query: 234 DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293
+ F + P ++ ++I +I + ++ E C+ L NG+
Sbjct: 129 VRN--YFCCGLQDFTPEP------DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGI 180
Query: 294 SCSTVPDQCYDE 305
+ D E
Sbjct: 181 IV--IKDNMAQE 190
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 4e-04
Identities = 13/117 (11%), Positives = 34/117 (29%), Gaps = 10/117 (8%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT 235
I + L+ G G G + ++ + + + L+ A+ ++ +
Sbjct: 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGK- 143
Query: 236 SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG 292
+ ++ + + I + + F C+ L NG
Sbjct: 144 ---FILASMETATLPP------NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNG 191
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
L++ L +EVL++ G G +A K L+E LK A ++ G Q
Sbjct: 29 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQ 86
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 5e-04
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG 231
L +L +GCG L+ E+ T + S + + +
Sbjct: 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP 89
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 5e-04
Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 16/121 (13%)
Query: 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
L+ + ++L + G G A + G + T + S + L A+ +E G++
Sbjct: 20 FLVSVANQIPQGKILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVK- 77
Query: 235 TSDYIFVITVNCLKPTNMTEL--FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG 292
IT N+ + + + + ++L+ L G
Sbjct: 78 -------ITTVQS---NLADFDIVADAWEGIVSIFC--HLPSSLRQQLYPKVYQGLKPGG 125
Query: 293 L 293
+
Sbjct: 126 V 126
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYA 223
L++ + G+ +L++GCG G L +I + G + G + ++ A
Sbjct: 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKA 95
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 7e-04
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
LE+G G G +A+ ++ + G +Y + L+ K+ +
Sbjct: 40 EPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKIAGVDRK 87
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 9e-04
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQD 234
+ ++G VL++GCG G + G K G+ + + QL+ A V+ +
Sbjct: 76 LPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF 135
Query: 235 TSDYIF 240
Sbjct: 136 FGSPSR 141
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 381 | |||
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 100.0 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 100.0 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 100.0 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.98 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.95 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.94 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.91 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.9 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.88 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.88 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.83 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.83 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.82 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.82 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.82 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.82 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.81 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.81 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.81 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.8 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.8 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.79 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.79 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.79 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.78 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.78 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.78 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.77 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.77 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.77 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.77 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.77 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.77 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.77 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.76 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.76 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.76 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.76 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.76 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.75 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.75 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.74 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.73 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.73 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.73 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.73 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.73 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.72 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.72 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.72 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.72 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.72 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.72 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.72 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.71 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.71 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.71 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.71 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.7 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.7 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.7 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.7 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.7 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.69 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.69 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.69 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.69 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.69 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.69 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.68 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.68 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.68 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.68 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.68 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.68 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.68 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.68 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.68 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.67 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.67 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.67 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.66 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.66 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.66 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.65 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.65 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.65 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.65 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.65 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.64 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.64 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.63 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.63 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.63 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.63 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.63 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.63 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.62 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.62 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.61 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.61 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.61 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.61 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.6 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.6 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.6 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.6 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.59 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.59 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.59 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.59 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.59 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.59 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.58 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.58 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.57 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.57 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.57 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.56 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.56 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.55 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.55 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.55 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.55 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.54 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.54 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.54 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.54 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.54 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.53 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.53 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.53 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.53 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.53 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.53 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.53 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.52 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.52 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.52 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.52 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.52 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.52 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.52 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.51 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.51 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.51 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.51 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.51 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.5 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.5 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.5 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.49 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.49 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.49 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.49 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.49 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.48 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.48 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.48 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.48 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.48 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.48 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.48 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.48 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.47 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.47 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.47 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.47 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.47 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.46 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.46 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.46 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.46 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.46 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.46 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.46 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.45 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.45 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.45 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.44 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.44 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.44 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.44 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.44 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.43 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.43 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.43 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.43 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.42 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.42 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.41 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.41 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.41 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.4 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.4 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.4 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.39 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.39 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.38 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.38 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.37 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.37 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.35 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.35 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.34 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.33 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.33 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.33 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.32 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.32 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.31 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.31 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.29 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.29 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.29 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.28 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.28 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.28 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.27 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.27 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.26 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.26 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.26 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.25 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.25 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.25 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.25 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.25 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.25 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.25 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.24 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.24 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.24 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.23 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.23 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.22 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.22 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.21 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.21 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.2 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.2 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.19 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.18 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.18 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.17 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.17 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.14 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.13 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.13 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.11 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.08 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.06 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.05 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.04 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.0 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.97 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.97 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.96 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.95 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.93 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.91 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.91 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.9 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.88 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.82 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.81 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.81 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.79 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.75 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.72 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.68 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.67 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.67 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.64 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.62 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.61 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.6 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.58 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.54 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.47 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.43 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.36 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.35 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.3 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.26 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.24 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.15 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.05 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.04 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.02 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.97 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.95 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.94 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.91 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.88 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.35 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.26 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 97.25 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.25 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.2 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.13 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 97.08 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.02 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.97 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.94 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.9 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.86 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.81 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.78 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.76 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.73 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.72 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.69 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.69 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.68 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.67 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.65 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.64 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.62 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.6 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.59 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.56 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.55 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.53 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.48 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.44 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.42 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.41 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.38 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.38 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.33 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.32 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 96.26 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.26 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.25 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 96.2 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.19 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.96 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.91 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.91 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.83 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.79 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.76 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.72 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.66 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.66 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.65 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.59 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.58 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.55 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 95.51 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.44 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.43 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.4 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 95.35 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.34 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 95.31 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.3 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.21 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.21 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.12 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.1 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.06 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 95.06 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 94.96 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.75 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.74 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.53 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 94.49 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 94.38 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 94.29 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 94.2 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.07 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 94.07 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 93.82 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 93.71 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 93.49 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.26 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 93.19 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.8 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 92.7 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 92.62 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 92.55 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 91.86 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 91.84 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 91.54 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 91.22 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 90.97 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 90.97 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 90.79 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.74 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 89.77 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 89.54 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 89.07 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.95 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 88.91 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 88.66 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 88.4 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.02 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 87.92 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 87.83 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 87.81 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 87.43 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 87.28 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 87.24 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 87.17 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 87.15 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 87.04 | |
| 3cnu_A | 116 | Predicted coding region AF_1534; structural GE MCS | 86.69 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 86.69 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 86.51 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 86.51 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 86.48 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 86.21 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 86.16 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 86.15 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 86.11 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 85.95 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 85.63 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 85.54 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 85.5 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 85.38 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 84.49 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 84.03 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 83.69 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 82.93 | |
| 3bkr_A | 126 | Sterol carrier protein-2 like-3; mosquito, fatty a | 82.54 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 82.5 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 82.48 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 81.97 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 81.93 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 81.74 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 81.43 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 81.18 | |
| 1ikt_A | 120 | Estradiol 17 beta-dehydrogenase 4; ALFA-beta fold, | 81.12 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 80.78 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 80.72 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 80.71 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 80.46 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 80.3 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 80.22 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 80.13 |
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=308.98 Aligned_cols=245 Identities=27% Similarity=0.388 Sum_probs=220.3
Q ss_pred hhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHH
Q 047022 124 LTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIV 203 (381)
Q Consensus 124 ~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la 203 (381)
.....++|++|||..+++ |+.++++.|.|+|++|.....+++++|.++++.+++.+.++++.+|||||||+|.++..++
T Consensus 13 ~~~~~~~i~~~Yd~~~~~-y~~~l~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la 91 (302)
T 3hem_A 13 LKPPVEAVRSHYDKSNEF-FKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAV 91 (302)
T ss_dssp CCCCHHHHHHHHTSCHHH-HHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHH
T ss_pred ccchHHHHHHhcCCCHHH-HHHhcCCCCceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHH
Confidence 345678999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhh-------Chhc
Q 047022 204 RQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAV-------GHDY 276 (381)
Q Consensus 204 ~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~-------~~~~ 276 (381)
+..+++|+|+|+|+.+++.|++++...++.+++++..+ |+.+++ ++||+|++..+++|+ +.++
T Consensus 92 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~---------~~fD~v~~~~~~~~~~d~~~~~~~~~ 161 (302)
T 3hem_A 92 AEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-GWEEFD---------EPVDRIVSLGAFEHFADGAGDAGFER 161 (302)
T ss_dssp HHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC-CGGGCC---------CCCSEEEEESCGGGTTCCSSCCCTTH
T ss_pred HhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-CHHHcC---------CCccEEEEcchHHhcCccccccchhH
Confidence 97679999999999999999999999999889999999 998764 889999999999999 4467
Q ss_pred HHHHHHHHHhccccCceEEEEcCCCCCCCC---CC---------chhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 047022 277 MEELFSCCESLLAENGLSCSTVPDQCYDEH---SL---------GPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHL 344 (381)
Q Consensus 277 ~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~---~~---------~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~ 344 (381)
...+++++.++|||||++++.......... .. ..+|+.+|++|++.+|+..++.+.+.+ +||+++++
T Consensus 162 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~-aGf~~~~~ 240 (302)
T 3hem_A 162 YDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSN-AGWKVERY 240 (302)
T ss_dssp HHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHH-HTCEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHh-CCcEEEEE
Confidence 789999999999999998876654321110 01 127899999999999999999776664 89999999
Q ss_pred EecchhHHHHHHHHHHHHHHhHHHHHhcCCCcccccC
Q 047022 345 ENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVRT 381 (381)
Q Consensus 345 ~~~~~~y~~tl~~W~~~f~~~~~~~~~~g~~~~f~r~ 381 (381)
++++.||.+|++.|+++|.++++++.++ |+++|+||
T Consensus 241 ~~~~~~y~~tl~~w~~~~~~~~~~~~~~-~~~~~~~~ 276 (302)
T 3hem_A 241 HRIGANYVPTLNAWADALQAHKDEAIAL-KGQETCDI 276 (302)
T ss_dssp EECGGGHHHHHHHHHHHHHHTHHHHHHH-HCHHHHHH
T ss_pred EeCchhHHHHHHHHHHHHHHhHHHHHHH-hCHHHHHH
Confidence 9999999999999999999999999998 99999885
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=293.59 Aligned_cols=245 Identities=26% Similarity=0.446 Sum_probs=216.4
Q ss_pred ChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHH
Q 047022 123 TLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEI 202 (381)
Q Consensus 123 ~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l 202 (381)
++..++++|++|||..+++ |+.++++.+.|++++|.....+++++|.++++.+++.+.+.++.+|||||||+|.++..+
T Consensus 4 ~~~~~~~~i~~~Yd~~~~~-~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l 82 (287)
T 1kpg_A 4 ELKPHFANVQAHYDLSDDF-FRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRA 82 (287)
T ss_dssp CSCCCHHHHHHHHTSCHHH-HTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHH
T ss_pred cccccHHHHHHhcCCCHHH-HHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHH
Confidence 4456788999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHH
Q 047022 203 VRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFS 282 (381)
Q Consensus 203 a~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~ 282 (381)
++..+++|+|+|+|+.+++.+++++...++.+++++..+ |+.+++ ++||+|++..+++|++++++..+++
T Consensus 83 ~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~---------~~fD~v~~~~~l~~~~~~~~~~~l~ 152 (287)
T 1kpg_A 83 VEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-GWEQFD---------EPVDRIVSIGAFEHFGHERYDAFFS 152 (287)
T ss_dssp HHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-CGGGCC---------CCCSEEEEESCGGGTCTTTHHHHHH
T ss_pred HHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC-ChhhCC---------CCeeEEEEeCchhhcChHHHHHHHH
Confidence 966688999999999999999999998888789999999 997665 7899999999999998778999999
Q ss_pred HHHhccccCceEEEEcCCCCCCCC------------CCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecchh
Q 047022 283 CCESLLAENGLSCSTVPDQCYDEH------------SLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETH 350 (381)
Q Consensus 283 ~~~~~LkpgG~~~i~~~~~~~~~~------------~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~ 350 (381)
++.++|||||++++..+....... .....++.++++|++.+|+..++.+.+. ++||++++++.++.|
T Consensus 153 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~-~aGf~~~~~~~~~~~ 231 (287)
T 1kpg_A 153 LAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECAS-ANGFTVTRVQSLQPH 231 (287)
T ss_dssp HHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHH-TTTCEEEEEEECHHH
T ss_pred HHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHH-hCCcEEEEEEeCcHh
Confidence 999999999998887654321110 1234578889999999999999966655 599999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCCcccc
Q 047022 351 YYQKLRRWRQKFREKHSEILALGFNEKFV 379 (381)
Q Consensus 351 y~~tl~~W~~~f~~~~~~~~~~g~~~~f~ 379 (381)
|.+|+..|.++|.++++++.+.++++.|.
T Consensus 232 y~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 260 (287)
T 1kpg_A 232 YAKTLDLWSAALQANKGQAIALQSEEVYE 260 (287)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 99999999999999999999985555443
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=290.71 Aligned_cols=249 Identities=23% Similarity=0.386 Sum_probs=213.9
Q ss_pred ccCChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHH
Q 047022 120 RKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLA 199 (381)
Q Consensus 120 ~~~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~ 199 (381)
++++...+.++|++|||..+++ |+.++++.+.|++++|.....+++++|.++++.+++.+.+.++.+|||||||+|.++
T Consensus 27 ~~~~~~~~~~~i~~~Yd~~~~~-~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~ 105 (318)
T 2fk8_A 27 SPTKTRTRFEDIQAHYDVSDDF-FALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTM 105 (318)
T ss_dssp -----------CGGGGCCCHHH-HTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHH
T ss_pred ccCChhhhHHHHHHhcCCCHHH-HHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHH
Confidence 7788999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHH
Q 047022 200 IEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEE 279 (381)
Q Consensus 200 ~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~ 279 (381)
..+++..+++|+|+|+|+.+++.|+++....++.+++++..+ |+.+++ ++||+|++..+++|++.+++..
T Consensus 106 ~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~---------~~fD~v~~~~~l~~~~~~~~~~ 175 (318)
T 2fk8_A 106 RRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ-GWEDFA---------EPVDRIVSIEAFEHFGHENYDD 175 (318)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-CGGGCC---------CCCSEEEEESCGGGTCGGGHHH
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-ChHHCC---------CCcCEEEEeChHHhcCHHHHHH
Confidence 999987688999999999999999999998888778999999 998765 7899999999999998778999
Q ss_pred HHHHHHhccccCceEEEEcCCCCCCCC------------CCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 280 LFSCCESLLAENGLSCSTVPDQCYDEH------------SLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 280 ~l~~~~~~LkpgG~~~i~~~~~~~~~~------------~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
+++++.++|||||++++..+....... .....++.++++|++.+|+.+++.+.+. ++||++++++.+
T Consensus 176 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~-~aGf~~~~~~~~ 254 (318)
T 2fk8_A 176 FFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGE-KAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHH-HTTCBCCCCEEC
T ss_pred HHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHH-hCCCEEEEEEec
Confidence 999999999999998887765432111 0123678889999999999999976666 489999999999
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHhcCCCcccccC
Q 047022 348 ETHYYQKLRRWRQKFREKHSEILALGFNEKFVRT 381 (381)
Q Consensus 348 ~~~y~~tl~~W~~~f~~~~~~~~~~g~~~~f~r~ 381 (381)
+.||.+|+..|.++|.++++++.+. +++.|.||
T Consensus 255 ~~~y~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~ 287 (318)
T 2fk8_A 255 RPHYIKTLRIWGDTLQSNKDKAIEV-TSEEVYNR 287 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHH-SCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHh-cChHHHHH
Confidence 9999999999999999999999987 68877664
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=247.83 Aligned_cols=239 Identities=15% Similarity=0.199 Sum_probs=182.7
Q ss_pred HHHHhhhhhcCCCcccccccccCCCCceeecccCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHH
Q 047022 126 QARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKH--EDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIV 203 (381)
Q Consensus 126 ~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~--~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la 203 (381)
.+.++|++|||..+++ |..++++.+ +++||.... .++.+++.+..+.+++.+.+.++.+|||||||+|.++..++
T Consensus 4 p~~~~~~~~Yd~~~~~-y~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~ 80 (273)
T 3bus_A 4 PTPEEVRQMYDDFTDP-FARIWGENL--HFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLA 80 (273)
T ss_dssp --------------------CCGGGC--CCCCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHH
T ss_pred CcHHHHHHHHcchHHH-HHHHcCCCc--eEEecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHH
Confidence 4567899999999999 999999875 569998766 68999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHH
Q 047022 204 RQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSC 283 (381)
Q Consensus 204 ~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~ 283 (381)
+..+++|+|+|+|+.+++.+++++...++.+++++..+ |+.+++ +++++||+|++..+++|++ +...++++
T Consensus 81 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~------~~~~~fD~v~~~~~l~~~~--~~~~~l~~ 151 (273)
T 3bus_A 81 TARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA-DAMDLP------FEDASFDAVWALESLHHMP--DRGRALRE 151 (273)
T ss_dssp HHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-CTTSCC------SCTTCEEEEEEESCTTTSS--CHHHHHHH
T ss_pred HhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC-ccccCC------CCCCCccEEEEechhhhCC--CHHHHHHH
Confidence 87789999999999999999999999898889999999 999887 4568999999999999994 57999999
Q ss_pred HHhccccCceEEEEcCCCCCCCCCCchhhhhh--hccCCCCCCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHHHHH
Q 047022 284 CESLLAENGLSCSTVPDQCYDEHSLGPGFIKE--YIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQK 361 (381)
Q Consensus 284 ~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~--yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~ 361 (381)
+.++|||||+++++.+.............+.. ..++...+++..++.+.+. ++||++++++.++.+|..++..|.++
T Consensus 152 ~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~aGf~~~~~~~~~~~~~~~~~~~~~~ 230 (273)
T 3bus_A 152 MARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVR-QAELVVTSTVDISAQARPSLVKTAEA 230 (273)
T ss_dssp HHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH-HTTCEEEEEEECHHHHTTHHHHHHHH
T ss_pred HHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHH-HcCCeEEEEEECcHhHHHHHHHHHHH
Confidence 99999999998887654321111111112222 2356778899988866665 58999999999999999999999999
Q ss_pred HHHhHHHHHhcCCCccc
Q 047022 362 FREKHSEILALGFNEKF 378 (381)
Q Consensus 362 f~~~~~~~~~~g~~~~f 378 (381)
+.++++.+... +++++
T Consensus 231 ~~~~~~~~~~~-~~~~~ 246 (273)
T 3bus_A 231 FENARSQVEPF-MGAEG 246 (273)
T ss_dssp HHHTHHHHHHH-HCHHH
T ss_pred HHHhHHHHHhh-cCHHH
Confidence 99888877654 55543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=219.76 Aligned_cols=227 Identities=16% Similarity=0.198 Sum_probs=181.9
Q ss_pred CChhHHHHhhhhhcCCC--ccccccccc-CCCCceeecccCCC--CCCHHHHHHHHHHHHHHHc----CCCCCCEEEEec
Q 047022 122 NTLTQARRHVSRLYDPS--NELFFFLFL-DKSMTYSCAIFKSK--HEDLEVGQIRKVSVLIEKV----KLVKGQEVLEIG 192 (381)
Q Consensus 122 ~~~~~~~~~i~~~Yd~~--~~~~y~~~l-~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l----~~~~~~~VLDiG 192 (381)
++...+++++.+|||.. +++ |+..+ ++.++ +++|... ...+.+++.+..+.+++.+ .+.++.+|||||
T Consensus 14 ~~~~~~~~~~~~~Yd~~~~~~~-y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiG 90 (297)
T 2o57_A 14 ATSKTVKDNAEIYYDDDDSDRF-YFHVWGGEDIH--VGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLG 90 (297)
T ss_dssp --CHHHHHHHHHTHHHHHHHHH-HHHHHTTSCCC--SCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEET
T ss_pred hhHHHHHHHHHHHcCCccchhH-HHHHhCCCceE--EEecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeC
Confidence 45567788999999986 488 86554 56654 5899887 8899999999999999999 888999999999
Q ss_pred CCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhh
Q 047022 193 CGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAV 272 (381)
Q Consensus 193 cG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~ 272 (381)
||+|.++..+++..+++|+|+|+|+.+++.|+++....++.+++++..+ |+.+++ +++++||+|++..+++|+
T Consensus 91 cG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~------~~~~~fD~v~~~~~l~~~ 163 (297)
T 2o57_A 91 AGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG-SFLEIP------CEDNSYDFIWSQDAFLHS 163 (297)
T ss_dssp CTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC-CTTSCS------SCTTCEEEEEEESCGGGC
T ss_pred CCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEc-CcccCC------CCCCCEeEEEecchhhhc
Confidence 9999999999987688999999999999999999998898889999999 999887 566899999999999999
Q ss_pred ChhcHHHHHHHHHhccccCceEEEEcCCCCCCCC-CCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecc---
Q 047022 273 GHDYMEELFSCCESLLAENGLSCSTVPDQCYDEH-SLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE--- 348 (381)
Q Consensus 273 ~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~-~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~--- 348 (381)
+ ++..+++++.++|||||+++++.+....... .....+...+..| .+++..++.+.+. ++||++++++.+.
T Consensus 164 ~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~-~aGf~~~~~~~~~~~~ 238 (297)
T 2o57_A 164 P--DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLH--DMGSLGLYRSLAK-ECGLVTLRTFSRPDSL 238 (297)
T ss_dssp S--CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCS--SCCCHHHHHHHHH-HTTEEEEEEEECHHHH
T ss_pred C--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCC--CCCCHHHHHHHHH-HCCCeEEEEEECchhh
Confidence 5 4899999999999999998887654321111 1123344444443 3567777765555 5899999988765
Q ss_pred -hhHHHHHHHHHHHHH
Q 047022 349 -THYYQKLRRWRQKFR 363 (381)
Q Consensus 349 -~~y~~tl~~W~~~f~ 363 (381)
.+|..++..|++++.
T Consensus 239 ~~~~~~~~~~~~~~~~ 254 (297)
T 2o57_A 239 VHHYSKVKAELIKRSS 254 (297)
T ss_dssp HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhHH
Confidence 567777777766543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-27 Score=222.44 Aligned_cols=234 Identities=17% Similarity=0.182 Sum_probs=186.6
Q ss_pred CChhHHHHhh-hhhcCCCcccccccccCCC-CceeecccCCCCCCHHHHHHHHHHHHHHHcC-CCCCCEEEEecCCchHH
Q 047022 122 NTLTQARRHV-SRLYDPSNELFFFLFLDKS-MTYSCAIFKSKHEDLEVGQIRKVSVLIEKVK-LVKGQEVLEIGCGWGTL 198 (381)
Q Consensus 122 ~~~~~~~~~i-~~~Yd~~~~~~y~~~l~~~-~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~ 198 (381)
|....+++++ ..|||..+++ +..+.++. +.|++.+|.. ....+....+.+++.+. ++++.+|||||||+|.+
T Consensus 57 ~~~~g~~~~i~~~~y~~~~~~-~~~~~~~~~~~y~~~~f~~----~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~ 131 (312)
T 3vc1_A 57 NLRLGDVDGLYHHHYGIGPVD-RAALGDPEHSEYEKKVIAE----LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGS 131 (312)
T ss_dssp HHHHHTTTTCCCCSCCCSCCC-HHHHCCTTSTTHHHHHHHH----HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHH
T ss_pred hhhcccccchhhhhcCCchhH-HHhhcCCCccccchHHHhh----hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHH
Confidence 4455666677 8999999998 99999988 9999999874 22333333457788887 88999999999999999
Q ss_pred HHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHH
Q 047022 199 AIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYME 278 (381)
Q Consensus 199 ~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~ 278 (381)
+..+++..+++|+|+|+|+.+++.|++++...++.+++++..+ |+.+++ +..++||+|++..+++|++ +.
T Consensus 132 ~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~------~~~~~fD~V~~~~~l~~~~---~~ 201 (312)
T 3vc1_A 132 MVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC-NMLDTP------FDKGAVTASWNNESTMYVD---LH 201 (312)
T ss_dssp HHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-CTTSCC------CCTTCEEEEEEESCGGGSC---HH
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC-ChhcCC------CCCCCEeEEEECCchhhCC---HH
Confidence 9999987688999999999999999999999999889999999 999877 4568999999999999993 79
Q ss_pred HHHHHHHhccccCceEEEEcCCCCC--CCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHH
Q 047022 279 ELFSCCESLLAENGLSCSTVPDQCY--DEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLR 356 (381)
Q Consensus 279 ~~l~~~~~~LkpgG~~~i~~~~~~~--~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~ 356 (381)
.+++++.++|||||++++..+.... ........++..+..+ .+++..++.+.+. ++||++++++.++ ..++.
T Consensus 202 ~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~l~-~aGf~~~~~~~~~---~~~~~ 275 (312)
T 3vc1_A 202 DLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFEC--NIHSRREYLRAMA-DNRLVPHTIVDLT---PDTLP 275 (312)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTC--CCCBHHHHHHHHH-TTTEEEEEEEECH---HHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcC--CCCCHHHHHHHHH-HCCCEEEEEEeCC---HHHHH
Confidence 9999999999999998876643221 1222334455555444 3678888866655 5999999999988 46899
Q ss_pred HHHHHHHHhHHHHHhcCCCccccc
Q 047022 357 RWRQKFREKHSEILALGFNEKFVR 380 (381)
Q Consensus 357 ~W~~~f~~~~~~~~~~g~~~~f~r 380 (381)
.|.++|... ...|+++.|.|
T Consensus 276 ~w~~~~~~~----~~~g~~~~~~~ 295 (312)
T 3vc1_A 276 YWELRATSS----LVTGIEKAFIE 295 (312)
T ss_dssp HHHHHTTST----TCCSCHHHHHH
T ss_pred HHHHHHHHh----hhhcChHHHHH
Confidence 999999855 24566666543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-24 Score=196.26 Aligned_cols=194 Identities=19% Similarity=0.225 Sum_probs=159.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
......+++.+.+.++.+|||||||+|.++..+++..+++|+|+|+|+.+++.++++.... +++++..+ |+.+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~-d~~~~~- 115 (266)
T 3ujc_A 41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEAN-DILTKE- 115 (266)
T ss_dssp HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEEC-CTTTCC-
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEC-ccccCC-
Confidence 3445678888888899999999999999999999876889999999999999999886543 58999999 998876
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCC-CCCCCHHH
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPS-GCLPSLRR 328 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pg-g~lp~~~~ 328 (381)
+++++||+|++..+++|++..++..+++++.++|||||.++++.+..... ......+..++.+. ...++..+
T Consensus 116 -----~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 188 (266)
T 3ujc_A 116 -----FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEK--ENWDDEFKEYVKQRKYTLITVEE 188 (266)
T ss_dssp -----CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCG--GGCCHHHHHHHHHHTCCCCCHHH
T ss_pred -----CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCc--ccchHHHHHHHhcCCCCCCCHHH
Confidence 45689999999999999987789999999999999999988876543221 11223334454443 34678888
Q ss_pred HHHHHHhcCCcEEEEEEecchhHHHHHHHHHHHHHHhHHHHHhcCCCcc
Q 047022 329 VTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEK 377 (381)
Q Consensus 329 ~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f~~~~~~~~~~g~~~~ 377 (381)
+.+.+. ++||++++.+.++.+|..++..|.+++..+++++... +++.
T Consensus 189 ~~~~l~-~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 235 (266)
T 3ujc_A 189 YADILT-ACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKL-FSEK 235 (266)
T ss_dssp HHHHHH-HTTCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHH-SCHH
T ss_pred HHHHHH-HcCCeEEEEEeCCHHHHHHHHHHHHHHHhCHHHHHHh-cCHH
Confidence 866655 5899999999999999999999999999999998876 5544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=196.65 Aligned_cols=174 Identities=18% Similarity=0.182 Sum_probs=144.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc--CcCCccccCCCc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL--KPTNMTELFLGN 259 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l--~~~~l~~~~~~~ 259 (381)
++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ +++..+ |..+. + +++++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~---------~~~~~~-d~~~~~~~------~~~~~ 101 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK---------FNVVKS-DAIEYLKS------LPDKY 101 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT---------SEEECS-CHHHHHHT------SCTTC
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh---------cceeec-cHHHHhhh------cCCCC
Confidence 457889999999999999999986 88999999999999988865 778888 88775 3 45689
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCC-CCCCHHHHHHHHHhcCC
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSG-CLPSLRRVTSAMTSSSR 338 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg-~lp~~~~~~~~l~~~~G 338 (381)
||+|++..+++|+++.+...+++++.++|||||++++++++.. ....+...|+.|.. ..++..++.+.+. ++|
T Consensus 102 fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~aG 175 (240)
T 3dli_A 102 LDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT-----SLYSLINFYIDPTHKKPVHPETLKFILE-YLG 175 (240)
T ss_dssp BSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT-----SHHHHHHHTTSTTCCSCCCHHHHHHHHH-HHT
T ss_pred eeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc-----hhHHHHHHhcCccccccCCHHHHHHHHH-HCC
Confidence 9999999999999877889999999999999999999887643 22334455666654 4566777755544 589
Q ss_pred cEEEEEEecc----------hhHHHHHHHHHHH-HHHhHHHHHhcCCCcccc
Q 047022 339 LCVEHLENIE----------THYYQKLRRWRQK-FREKHSEILALGFNEKFV 379 (381)
Q Consensus 339 f~v~~~~~~~----------~~y~~tl~~W~~~-f~~~~~~~~~~g~~~~f~ 379 (381)
|++++++.+. .+ +.|+..|+++ |.++++.+..+||+++.+
T Consensus 176 f~~~~~~~~~~~~~~~~l~~~~-~~~l~~w~~~~~~~~~~~~~~~~f~~~~y 226 (240)
T 3dli_A 176 FRDVKIEFFEECEELTKLAKID-SNTVSEEVIRVINENIEKLNRILFGPQDY 226 (240)
T ss_dssp CEEEEEEEECCCCTTTSCCCCC-CSSSCHHHHHHHHHHHHHHHHHHSCCSEE
T ss_pred CeEEEEEEeccCcccccccccc-cccccHHHHHhhhhhHHHHHhhccCccch
Confidence 9999998887 66 7899999999 999999999999998653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=181.47 Aligned_cols=178 Identities=14% Similarity=0.183 Sum_probs=142.4
Q ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
...+++.+. ++++.+|||||||+|.++..+++.++++|+|+|+|+.+++.|++++...++.+++++..+ |+.+++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~--- 109 (267)
T 3kkz_A 34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVG-SMDDLP--- 109 (267)
T ss_dssp HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-CTTSCC---
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEc-ChhhCC---
Confidence 345566665 678999999999999999999998667999999999999999999999999888999999 998887
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCC-CCchhhhhhhccCCCCCCCHHHHH
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEH-SLGPGFIKEYIFPSGCLPSLRRVT 330 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~-~~~~~~i~~yi~pgg~lp~~~~~~ 330 (381)
++.++||+|++..+++|+ ++..+++++.++|||||+++++.+....... .....+... .+| .+++..++.
T Consensus 110 ---~~~~~fD~i~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~ 180 (267)
T 3kkz_A 110 ---FRNEELDLIWSEGAIYNI---GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMD-AYP--EIDTIPNQV 180 (267)
T ss_dssp ---CCTTCEEEEEESSCGGGT---CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHH-HCT--TCEEHHHHH
T ss_pred ---CCCCCEEEEEEcCCceec---CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHH-hCC--CCCCHHHHH
Confidence 456899999999999999 4689999999999999998887654221111 111112111 122 567888886
Q ss_pred HHHHhcCCcEEEEEEecc-----hhHHHHHHHHHHHHHH
Q 047022 331 SAMTSSSRLCVEHLENIE-----THYYQKLRRWRQKFRE 364 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~~-----~~y~~tl~~W~~~f~~ 364 (381)
+.+. ++||+++++..++ .+|..++..|.+++.+
T Consensus 181 ~~l~-~aGf~~v~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (267)
T 3kkz_A 181 AKIH-KAGYLPVATFILPENCWTDHYFTPKVAAQKIFLT 218 (267)
T ss_dssp HHHH-HTTEEEEEEEECCGGGTTTTTHHHHHHHHHHHHH
T ss_pred HHHH-HCCCEEEEEEECCHhHHHHHHHHHHHHHHHHHHH
Confidence 6665 5899999999887 7899999999988854
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=187.89 Aligned_cols=206 Identities=15% Similarity=0.112 Sum_probs=153.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHH------HHHHHHHHHHHcCCCC
Q 047022 163 EDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSEL------QLKYAEIKVKEAGLQD 234 (381)
Q Consensus 163 ~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~------~~~~a~~~~~~~gl~~ 234 (381)
.++..+|.++...+++.+.++++.+|||||||+|.++..+++..+ .+|+|+|+|+. +++.|++++...++.+
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~ 101 (275)
T 3bkx_A 22 RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGD 101 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGG
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCC
Confidence 467889999999999999999999999999999999999998743 89999999997 9999999999888877
Q ss_pred CeEEEEecC-cc--ccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchh
Q 047022 235 TSDYIFVIT-VN--CLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPG 311 (381)
Q Consensus 235 ~i~~~~~~d-~~--~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~ 311 (381)
++++..+ | +. .++ +.+++||+|++..+++|+++ ...+++.+.++++|||++++...............
T Consensus 102 ~v~~~~~-d~~~~~~~~------~~~~~fD~v~~~~~l~~~~~--~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~ 172 (275)
T 3bkx_A 102 RLTVHFN-TNLSDDLGP------IADQHFDRVVLAHSLWYFAS--ANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGH 172 (275)
T ss_dssp GEEEECS-CCTTTCCGG------GTTCCCSEEEEESCGGGSSC--HHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHH
T ss_pred ceEEEEC-ChhhhccCC------CCCCCEEEEEEccchhhCCC--HHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhH
Confidence 8999999 8 32 333 45689999999999999964 56677888888888999888654432211111011
Q ss_pred ----hhhhhc---c---CCC--CCCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHH--HHHHHHHHhHHHHH-h-cCCC
Q 047022 312 ----FIKEYI---F---PSG--CLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLR--RWRQKFREKHSEIL-A-LGFN 375 (381)
Q Consensus 312 ----~i~~yi---~---pgg--~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~--~W~~~f~~~~~~~~-~-~g~~ 375 (381)
+++... . +.. .+++..++.+.+. ++||++++.+.+ |.+|+. .|++.+..++.+.. . .||+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~-~aGf~~~~~~~~---~~~~~~~~~W~~~~~~~~~~~~~~~~g~~ 248 (275)
T 3bkx_A 173 LQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAH-DNTWTYTAGTIV---EDPTLDDAHWEIATTNALLTELKLSTDLR 248 (275)
T ss_dssp HHHHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHH-HHTCEEEECCCB---CCTTCTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhhccccccccccccCCHHHHHHHHH-HCCCeeEEEEEe---cCCCCCCchhhHHHHHHHHHHHHhhcccc
Confidence 111111 1 122 4688888866655 589999988777 667777 89986665554432 2 5688
Q ss_pred cccccC
Q 047022 376 EKFVRT 381 (381)
Q Consensus 376 ~~f~r~ 381 (381)
++|+||
T Consensus 249 ~~~~~~ 254 (275)
T 3bkx_A 249 DRVKPL 254 (275)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888774
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.9e-20 Score=168.04 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=127.2
Q ss_pred HHHHHHHc-CCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKV-KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l-~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
...++..+ .++++.+|||||||+|.++..+++..+++|+|+|+|+.+++.+++++...++.+++++..+ |+.+++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~--- 109 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITG-SMDNLP--- 109 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-CTTSCS---
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC-ChhhCC---
Confidence 33455655 4678899999999999999999998556999999999999999999999999888999999 998877
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCC-CCchhhhhhhccCCCCCCCHHHHH
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEH-SLGPGFIKEYIFPSGCLPSLRRVT 330 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~-~~~~~~i~~yi~pgg~lp~~~~~~ 330 (381)
++.++||+|++..+++|+ ++..+++++.++|||||+++++.+....... .....+... .+| .+++..++.
T Consensus 110 ---~~~~~fD~v~~~~~l~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~ 180 (257)
T 3f4k_A 110 ---FQNEELDLIWSEGAIYNI---GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMD-AYP--EISVIPTCI 180 (257)
T ss_dssp ---SCTTCEEEEEEESCSCCC---CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHH-HCT--TCCBHHHHH
T ss_pred ---CCCCCEEEEEecChHhhc---CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHH-hCC--CCCCHHHHH
Confidence 456899999999999998 3689999999999999998887654221111 111122111 123 367888886
Q ss_pred HHHHhcCCcEEEEEEecc
Q 047022 331 SAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~~ 348 (381)
+.+. ++||++++...+.
T Consensus 181 ~~l~-~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 181 DKME-RAGYTPTAHFILP 197 (257)
T ss_dssp HHHH-HTTEEEEEEEECC
T ss_pred HHHH-HCCCeEEEEEECC
Confidence 6665 5899999887765
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-20 Score=172.61 Aligned_cols=215 Identities=13% Similarity=0.134 Sum_probs=129.1
Q ss_pred CChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHH
Q 047022 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIE 201 (381)
Q Consensus 122 ~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~ 201 (381)
+++....+++.++||..... |.........+ .+... .+.+...+....+.++.+|||||||+|.++..
T Consensus 14 ~~~~~~~~~~~~~y~~~~~~-~~~~~~~~~~~----------~~~~~-~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~ 81 (298)
T 1ri5_A 14 QAMEGKKEEIREHYNSIRER-GRESRQRSKTI----------NIRNA-NNFIKACLIRLYTKRGDSVLDLGCGKGGDLLK 81 (298)
T ss_dssp ----------------------------CCSH----------HHHHH-HHHHHHHHHHHHCCTTCEEEEETCTTTTTHHH
T ss_pred chhhhhHHHHHHHHHHhhcc-cccccccchhh----------hHHHH-HHHHHHHHHHHhCCCCCeEEEECCCCCHHHHH
Confidence 55666777899999976555 32221111000 11111 12222333222356889999999999999999
Q ss_pred HHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-CCCcccEEEEchhhHh--hChhcHH
Q 047022 202 IVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL-FLGNFSTVFICGMIEA--VGHDYME 278 (381)
Q Consensus 202 la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~-~~~~fD~Ivs~~~l~~--~~~~~~~ 278 (381)
+++....+|+|+|+|+.+++.|+++....++..++++..+ |+.+.+ + ..++||+|++..+++| ....++.
T Consensus 82 l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~------~~~~~~fD~v~~~~~l~~~~~~~~~~~ 154 (298)
T 1ri5_A 82 YERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ-DSYGRH------MDLGKEFDVISSQFSFHYAFSTSESLD 154 (298)
T ss_dssp HHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEES-CTTTSC------CCCSSCEEEEEEESCGGGGGSSHHHHH
T ss_pred HHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEEC-Cccccc------cCCCCCcCEEEECchhhhhcCCHHHHH
Confidence 8886445999999999999999999988877678999999 998876 3 4578999999999987 3346789
Q ss_pred HHHHHHHhccccCceEEEEcCCCCCC----------C--C---CC---chh--hhhhhc---cCC-----CCCCCHHHHH
Q 047022 279 ELFSCCESLLAENGLSCSTVPDQCYD----------E--H---SL---GPG--FIKEYI---FPS-----GCLPSLRRVT 330 (381)
Q Consensus 279 ~~l~~~~~~LkpgG~~~i~~~~~~~~----------~--~---~~---~~~--~i~~yi---~pg-----g~lp~~~~~~ 330 (381)
.+++++.++|||||++++++++.... . + .. ... +-..|. .+. ..+.+..++.
T Consensus 155 ~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~ 234 (298)
T 1ri5_A 155 IAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMV 234 (298)
T ss_dssp HHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHH
Confidence 99999999999999999887663100 0 0 00 000 000011 010 1345677775
Q ss_pred HHHHhcCCcEEEEEEecchhHHHHHH
Q 047022 331 SAMTSSSRLCVEHLENIETHYYQKLR 356 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~~~~y~~tl~ 356 (381)
+ +.+++||+++..+.+...|...+.
T Consensus 235 ~-ll~~aGf~~v~~~~~~~~~~~~~~ 259 (298)
T 1ri5_A 235 D-GFKRLGLSLVERKGFIDFYEDEGR 259 (298)
T ss_dssp H-HHHTTTEEEEEEEEHHHHHHHHHH
T ss_pred H-HHHHcCCEEEEecCHHHHHHHHHH
Confidence 4 455699999999998877766654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=164.17 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=129.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...+..+++.+.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|++++...++.+++++..+ |+.+++
T Consensus 22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~~- 99 (256)
T 1nkv_A 22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN-DAAGYV- 99 (256)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CCTTCC-
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC-ChHhCC-
Confidence 345667888888899999999999999999999987788999999999999999999999898889999999 998887
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC-CCCCCCHHH
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP-SGCLPSLRR 328 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p-gg~lp~~~~ 328 (381)
+ +++||+|++..+++|++ ++..+++++.++|||||+++++.+...... ....+...+..+ ...+++..+
T Consensus 100 -----~-~~~fD~V~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 169 (256)
T 1nkv_A 100 -----A-NEKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLP--ATEEIAQACGVSSTSDFLTLPG 169 (256)
T ss_dssp -----C-SSCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCC--SSHHHHHTTTCSCGGGSCCHHH
T ss_pred -----c-CCCCCEEEECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCcccCCC--ChHHHHHHHhcccccccCCHHH
Confidence 3 58899999999999995 579999999999999999888765422111 111222222111 124567788
Q ss_pred HHHHHHhcCCcEEEEEEec
Q 047022 329 VTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 329 ~~~~l~~~~Gf~v~~~~~~ 347 (381)
+.+.+. ++||+++.+...
T Consensus 170 ~~~~l~-~aGf~~~~~~~~ 187 (256)
T 1nkv_A 170 LVGAFD-DLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHH-TTTBCCCEEEEC
T ss_pred HHHHHH-HCCCeeEEEEeC
Confidence 866555 599998776554
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-22 Score=192.31 Aligned_cols=204 Identities=18% Similarity=0.170 Sum_probs=151.1
Q ss_pred cccCCCCceeecccCCCCCCHHHH---H----HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcC
Q 047022 145 LFLDKSMTYSCAIFKSKHEDLEVG---Q----IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITL 215 (381)
Q Consensus 145 ~~l~~~~~ys~~~~~~~~~~l~~a---q----~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDi 215 (381)
.|+++.+.|+++|+.....++..+ | ......+++.+.++++.+|||||||+|.++..+++.. +.+|+++|+
T Consensus 29 ~fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~ 108 (317)
T 1dl5_A 29 EFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY 108 (317)
T ss_dssp GGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEES
T ss_pred HhCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEEC
Confidence 356677777777765433123333 2 2667788899999999999999999999999999872 357999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 216 SELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 216 s~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
|+++++.|++++...++. ++++..+ |+.+..+ ..++||+|++..+++|++ +.+.++|||||+++
T Consensus 109 s~~~~~~a~~~~~~~g~~-~v~~~~~-d~~~~~~------~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lv 172 (317)
T 1dl5_A 109 SRKICEIAKRNVERLGIE-NVIFVCG-DGYYGVP------EFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVI 172 (317)
T ss_dssp CHHHHHHHHHHHHHTTCC-SEEEEES-CGGGCCG------GGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCC-CeEEEEC-Chhhccc------cCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEE
Confidence 999999999999988886 5999999 9988551 347899999999999985 46788999999988
Q ss_pred EEcCCCC--CC---CC-CCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHHHH-HHHHhHHH
Q 047022 296 STVPDQC--YD---EH-SLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQ-KFREKHSE 368 (381)
Q Consensus 296 i~~~~~~--~~---~~-~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~-~f~~~~~~ 368 (381)
+...... .. .+ .....|+.++++|++.+|....+...+.+ . +.. ... ..|+.|++.|++ +|.+.+..
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~-~-~~~--~~~--~~y~~tl~~~~~~~f~~~~~~ 246 (317)
T 1dl5_A 173 VPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNLGNLLER-N-RKL--LRE--FPFNREILLVRSHIFVELVDL 246 (317)
T ss_dssp EEBCBGGGTBCEEEEEEEETTEEEEEEEEECCCCBCCGGGSCHHHH-H-HTT--CCC--CCEEEEEECTTHHHHHHHHHH
T ss_pred EEECCCCcccceEEEEEEeCCcEEEEEeccEEEEEccCcccccccc-c-hhh--hhc--ccchhhccCcchhhhhhhhhh
Confidence 8765432 11 11 11346788899999999887655333332 1 111 111 227888999998 99988877
Q ss_pred HH
Q 047022 369 IL 370 (381)
Q Consensus 369 ~~ 370 (381)
..
T Consensus 247 ~~ 248 (317)
T 1dl5_A 247 LT 248 (317)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=168.53 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=101.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
..+++.. ++|+.+|||||||+|..+..++++ ++++|+|+|+|+.|++.|++++...+...++++..+ |+.+++
T Consensus 61 ~~l~~~~-~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~-D~~~~~-- 136 (261)
T 4gek_A 61 GMLAERF-VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG-DIRDIA-- 136 (261)
T ss_dssp HHHHHHH-CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-CTTTCC--
T ss_pred HHHHHHh-CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeec-cccccc--
Confidence 3444433 579999999999999999999986 478999999999999999999998888889999999 998887
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.++||+|++..+++|+++.+...++++++++|||||+++++..
T Consensus 137 ------~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 137 ------IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp ------CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 2569999999999999877788999999999999999888643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-20 Score=170.33 Aligned_cols=185 Identities=17% Similarity=0.199 Sum_probs=125.8
Q ss_pred eeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 047022 153 YSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAG 231 (381)
Q Consensus 153 ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~g 231 (381)
|..+++......+..........+.....+.++.+|||||||+|.++..+++. ++.+|+++|+|+.+++.+++++...+
T Consensus 6 Y~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 85 (276)
T 3mgg_A 6 YVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG 85 (276)
T ss_dssp -----------------CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHhhHHHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 44444444444444444444445555556678999999999999999999987 47899999999999999999999888
Q ss_pred CCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC---
Q 047022 232 LQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL--- 308 (381)
Q Consensus 232 l~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~--- 308 (381)
+. ++++..+ |..+++ ++.++||+|++..+++|++ ++..+++++.++|||||++++..++........
T Consensus 86 ~~-~~~~~~~-d~~~~~------~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 155 (276)
T 3mgg_A 86 IK-NVKFLQA-NIFSLP------FEDSSFDHIFVCFVLEHLQ--SPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGK 155 (276)
T ss_dssp CC-SEEEEEC-CGGGCC------SCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCH
T ss_pred CC-CcEEEEc-ccccCC------CCCCCeeEEEEechhhhcC--CHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcH
Confidence 75 7999999 999877 4568999999999999994 578999999999999999888765432111101
Q ss_pred -chhhhh----hhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 309 -GPGFIK----EYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 309 -~~~~i~----~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
...+.. .....++...+..++.+.+ +++||++++++...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~aGf~~v~~~~~~ 199 (276)
T 3mgg_A 156 KAIEAWNCLIRVQAYMKGNSLVGRQIYPLL-QESGFEKIRVEPRM 199 (276)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTGGGGHHHHH-HHTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHH-HHCCCCeEEEeeEE
Confidence 111111 1122344444555564444 45899998887654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.7e-20 Score=168.74 Aligned_cols=168 Identities=14% Similarity=0.064 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 169 q~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
+...+..+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+++ ++++..+ |+.+++
T Consensus 22 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~-d~~~l~ 98 (260)
T 1vl5_A 22 KGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQG-DAEQMP 98 (260)
T ss_dssp -CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEEC-CC-CCC
T ss_pred CHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEe-cHHhCC
Confidence 3445667888888889999999999999999999986 669999999999999999999888875 7999999 998887
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCC-CCchhhhhhhccC-CCCCCCH
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEH-SLGPGFIKEYIFP-SGCLPSL 326 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~-~~~~~~i~~yi~p-gg~lp~~ 326 (381)
+++++||+|++..+++|++ ++..+++++.++|||||++++..+....... ......+.....+ .....+.
T Consensus 99 ------~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (260)
T 1vl5_A 99 ------FTDERFHIVTCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKK 170 (260)
T ss_dssp ------SCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBH
T ss_pred ------CCCCCEEEEEEhhhhHhcC--CHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCH
Confidence 5668999999999999994 6899999999999999998886433211100 0001111112122 2234567
Q ss_pred HHHHHHHHhcCCcEEEEEEecc
Q 047022 327 RRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 327 ~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
.++.+.+. ++||+++.++...
T Consensus 171 ~~~~~~l~-~aGf~~~~~~~~~ 191 (260)
T 1vl5_A 171 SDWLKMLE-EAGFELEELHCFH 191 (260)
T ss_dssp HHHHHHHH-HHTCEEEEEEEEE
T ss_pred HHHHHHHH-HCCCeEEEEEEee
Confidence 77755555 5899988766543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-20 Score=171.91 Aligned_cols=167 Identities=12% Similarity=0.111 Sum_probs=126.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
+.+..++..+..+ +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++.+++++..+ |+.+++
T Consensus 56 ~~l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~-- 130 (285)
T 4htf_A 56 QDLDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHC-AAQDVA-- 130 (285)
T ss_dssp HHHHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEES-CGGGTG--
T ss_pred HHHHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEc-CHHHhh--
Confidence 3456677777644 679999999999999999996 89999999999999999999998888778999999 998876
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCC----CCchhhhhhhcc-------C
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEH----SLGPGFIKEYIF-------P 319 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~----~~~~~~i~~yi~-------p 319 (381)
.+.+++||+|++..+++|++ ++..+++++.++|||||++++..++...... ......+..... .
T Consensus 131 ---~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (285)
T 4htf_A 131 ---SHLETPVDLILFHAVLEWVA--DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLS 205 (285)
T ss_dssp ---GGCSSCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CC
T ss_pred ---hhcCCCceEEEECchhhccc--CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCC
Confidence 23568999999999999994 5799999999999999998887754321000 000011111111 1
Q ss_pred CCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 320 SGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 320 gg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
.....+..++.+.+. ++||++++++.++
T Consensus 206 ~~~~~~~~~l~~~l~-~aGf~v~~~~~~~ 233 (285)
T 4htf_A 206 PDYPRDPTQVYLWLE-EAGWQIMGKTGVR 233 (285)
T ss_dssp CSCCBCHHHHHHHHH-HTTCEEEEEEEES
T ss_pred CCCCCCHHHHHHHHH-HCCCceeeeeeEE
Confidence 123456777755554 5899999888764
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=167.34 Aligned_cols=150 Identities=15% Similarity=0.115 Sum_probs=115.5
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
...+++.+.+.++.+|||||||+|.++..++++ +.+|+++|+|+.|++.|++++... .+. . ++.+++.+.
T Consensus 34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~----~v~---~-~~~~~~~~~- 103 (261)
T 3iv6_A 34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR----CVT---I-DLLDITAEI- 103 (261)
T ss_dssp HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS----CCE---E-EECCTTSCC-
T ss_pred HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc----cce---e-eeeeccccc-
Confidence 456788888899999999999999999999986 889999999999999999986543 123 3 333332100
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCC--------------------------CC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYD--------------------------EH 306 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~--------------------------~~ 306 (381)
.....++||+|++..+++|+..++...+++++.++| |||+++++.+...+. .+
T Consensus 104 ~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~~~~~~~~~~~~ 182 (261)
T 3iv6_A 104 PKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKFFDPSDKTFHF 182 (261)
T ss_dssp CGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHHHEETTTTEEEG
T ss_pred ccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeeeeecCcccceeh
Confidence 001247899999999999998778889999999999 999999886543221 11
Q ss_pred CCchhhhhhhccCCCCCCCHHHHHHHHH
Q 047022 307 SLGPGFIKEYIFPSGCLPSLRRVTSAMT 334 (381)
Q Consensus 307 ~~~~~~i~~yi~pgg~lp~~~~~~~~l~ 334 (381)
.....||.+|+||+|.+|+...+ +...
T Consensus 183 ~~~~~~i~~~~~p~g~~~~~~~~-~~~~ 209 (261)
T 3iv6_A 183 REAGDVLDRALVPHGLIDKPTLL-EWYR 209 (261)
T ss_dssp GGTTHHHHHHCCCCTTCCHHHHH-HHHH
T ss_pred hhhhhHHHhccCCCCcccHHHHH-HHHH
Confidence 34578999999999999987544 4443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-20 Score=169.74 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=116.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCC-HHHHHHH---HHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLS-ELQLKYA---EIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis-~~~~~~a---~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
..++.+|||||||+|.++..+++. ++.+|+|+|+| +.|++.| ++++...+++ ++++..+ |+.+++.. .
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~-d~~~l~~~-----~ 94 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIA-AAESLPFE-----L 94 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECC-BTTBCCGG-----G
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEc-CHHHhhhh-----c
Confidence 357889999999999999999965 67899999999 6666666 7777777775 7999999 99888611 1
Q ss_pred CCcccEEEEchh----hHhhChhcHHHHHHHHHhccccCceEEEEcC-CCCCCCCCCchhhhhhhccCCCCCCCHH----
Q 047022 257 LGNFSTVFICGM----IEAVGHDYMEELFSCCESLLAENGLSCSTVP-DQCYDEHSLGPGFIKEYIFPSGCLPSLR---- 327 (381)
Q Consensus 257 ~~~fD~Ivs~~~----l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~-~~~~~~~~~~~~~i~~yi~pgg~lp~~~---- 327 (381)
.+.+|.|.++.. .+|.. .+...+++++.++|||||++++... +..+.. ..+... ..| .++..
T Consensus 95 ~d~v~~i~~~~~~~~~~~~~~-~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~----~~~~~~-~~~---~~~~~~~~~ 165 (225)
T 3p2e_A 95 KNIADSISILFPWGTLLEYVI-KPNRDILSNVADLAKKEAHFEFVTTYSDSYEE----AEIKKR-GLP---LLSKAYFLS 165 (225)
T ss_dssp TTCEEEEEEESCCHHHHHHHH-TTCHHHHHHHHTTEEEEEEEEEEECCCC----------------------CCHHHHHS
T ss_pred cCeEEEEEEeCCCcHHhhhhh-cchHHHHHHHHHhcCCCcEEEEEEeccccchh----chhhhc-CCC---CCChhhcch
Confidence 144555554432 12221 1346789999999999999877322 111111 010000 011 12222
Q ss_pred -HHHHHHHhcCCcEEEEEEecchhHHHHHHHHHHHHHHhHHHHHhcCCCccccc
Q 047022 328 -RVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVR 380 (381)
Q Consensus 328 -~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f~~~~~~~~~~g~~~~f~r 380 (381)
++.+.+. ++||++.+.+.++.+|+.|+ ...|.++..+|||++|+|
T Consensus 166 ~el~~~l~-~aGf~v~~~~~~~~~~~~~~-------~~~w~~~~~~~~~~~f~r 211 (225)
T 3p2e_A 166 EQYKAELS-NSGFRIDDVKELDNEYVKQF-------NSLWAKRLAFGRKRSFFR 211 (225)
T ss_dssp HHHHHHHH-HHTCEEEEEEEECHHHHTTC-------CSHHHHHHHHSSCCCEEE
T ss_pred HHHHHHHH-HcCCCeeeeeecCHHHHHHH-------HHHHhcccCccchhHHHH
Confidence 2544444 58999999999999998665 334555557799999998
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=160.96 Aligned_cols=156 Identities=13% Similarity=0.048 Sum_probs=117.4
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. .++++..+ |+.+++
T Consensus 36 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~-d~~~~~------ 102 (220)
T 3hnr_A 36 DILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP-----KEFSITEG-DFLSFE------ 102 (220)
T ss_dssp HHHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC-----TTCCEESC-CSSSCC------
T ss_pred HHHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeC-ChhhcC------
Confidence 4555555568899999999999999999996 8899999999999999998854 47999999 999887
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhcc----------CCCCCC
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIF----------PSGCLP 324 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~----------pgg~lp 324 (381)
+. ++||+|++..+++|+++.....+++++.++|||||.++++.+....... ....+..+.. +....+
T Consensus 103 ~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (220)
T 3hnr_A 103 VP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDA--YDKTVEAAKQRGFHQLANDLQTEYYT 179 (220)
T ss_dssp CC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHH--HHHHHHHHHHTTCHHHHHHHHHSCCC
T ss_pred CC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHH--HHHHHHHHHhCCCccchhhcchhhcC
Confidence 34 8999999999999997654555999999999999999988654321110 1111111111 112466
Q ss_pred CHHHHHHHHHhcCCcEEEEEEec
Q 047022 325 SLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
+..++.+.+. ++||+++..+..
T Consensus 180 ~~~~~~~~l~-~aGf~v~~~~~~ 201 (220)
T 3hnr_A 180 RIPVMQTIFE-NNGFHVTFTRLN 201 (220)
T ss_dssp BHHHHHHHHH-HTTEEEEEEECS
T ss_pred CHHHHHHHHH-HCCCEEEEeecc
Confidence 7888855555 599998877654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=159.06 Aligned_cols=164 Identities=14% Similarity=0.142 Sum_probs=126.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
......+++.+.++++.+|||||||+|.++..+++. +.+|+++|+|+.+++.+++++...++. ++++..+ |+.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~-d~~~~~- 82 (239)
T 1xxl_A 7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQG-TAESLP- 82 (239)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEEC-BTTBCC-
T ss_pred CCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEec-ccccCC-
Confidence 444557788888999999999999999999999886 679999999999999999999888875 7999999 998877
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhh---hhccC-CCCCCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIK---EYIFP-SGCLPS 325 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~---~yi~p-gg~lp~ 325 (381)
+.+++||+|++..+++|++ ++..+++++.++|||||++++..+...... ....+.. ....+ .....+
T Consensus 83 -----~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 153 (239)
T 1xxl_A 83 -----FPDDSFDIITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPEDP--VLDEFVNHLNRLRDPSHVRESS 153 (239)
T ss_dssp -----SCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSSH--HHHHHHHHHHHHHCTTCCCCCB
T ss_pred -----CCCCcEEEEEECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCCCCCh--hHHHHHHHHHHhccccccCCCC
Confidence 4568999999999999994 689999999999999999888654322111 0111111 11122 123456
Q ss_pred HHHHHHHHHhcCCcEEEEEEec
Q 047022 326 LRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 326 ~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
..++.+.+. ++||+++.+...
T Consensus 154 ~~~~~~ll~-~aGf~~~~~~~~ 174 (239)
T 1xxl_A 154 LSEWQAMFS-ANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHHHH-HTTEEEEEEEEE
T ss_pred HHHHHHHHH-HCCCcEEEEEee
Confidence 777755555 589998877665
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=159.96 Aligned_cols=142 Identities=11% Similarity=0.069 Sum_probs=113.2
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. .++++..+ |+.+++ +..++||+|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~-d~~~~~------~~~~~fD~v~ 107 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTH------PSVTFHHG-TITDLS------DSPKRWAGLL 107 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHC------TTSEEECC-CGGGGG------GSCCCEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC------CCCeEEeC-cccccc------cCCCCeEEEE
Confidence 789999999999999999996 889999999999999999872 37999999 998876 4568999999
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHL 344 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~ 344 (381)
+..+++|++.+++..+++++.++|||||.++++.+....... + ..... .....+..++.+.+. ++||+++.+
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-----~-~~~~~-~~~~~~~~~~~~~l~-~~Gf~~~~~ 179 (203)
T 3h2b_A 108 AWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEP-----M-YHPVA-TAYRWPLPELAQALE-TAGFQVTSS 179 (203)
T ss_dssp EESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEE-----E-CCSSS-CEEECCHHHHHHHHH-HTTEEEEEE
T ss_pred ehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhh-----h-hchhh-hhccCCHHHHHHHHH-HCCCcEEEE
Confidence 999999998778999999999999999999988765432110 0 00000 112356777755555 589999988
Q ss_pred Eecc
Q 047022 345 ENIE 348 (381)
Q Consensus 345 ~~~~ 348 (381)
+...
T Consensus 180 ~~~~ 183 (203)
T 3h2b_A 180 HWDP 183 (203)
T ss_dssp EECT
T ss_pred EecC
Confidence 7654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-19 Score=158.21 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=118.4
Q ss_pred HHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+++.+. +.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++ .+. .++++..+ |+.++.
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~-d~~~~~---- 103 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQ-DLFDWT---- 103 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG----GCC-TTEEEEEC-CTTSCC----
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEec-ccccCC----
Confidence 34555554 567889999999999999999997 8899999999999999988 344 47999999 998764
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC-----chhhhhhhccCC------C
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL-----GPGFIKEYIFPS------G 321 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~-----~~~~i~~yi~pg------g 321 (381)
..++||+|++..+++|+++.....+++++.++|||||.++++.++........ ...++.+.+..+ .
T Consensus 104 ---~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (218)
T 3ou2_A 104 ---PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVK 180 (218)
T ss_dssp ---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEEC
T ss_pred ---CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhh
Confidence 45899999999999999876679999999999999999888776542111110 011111111111 1
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEEEecchh
Q 047022 322 CLPSLRRVTSAMTSSSRLCVEHLENIETH 350 (381)
Q Consensus 322 ~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~ 350 (381)
..++..++.+.+. ++||++...+....|
T Consensus 181 ~~~~~~~~~~~l~-~aGf~v~~~~~~~~~ 208 (218)
T 3ou2_A 181 VFRSPAELTERLT-ALGWSCSVDEVHPGF 208 (218)
T ss_dssp CCCCHHHHHHHHH-HTTEEEEEEEEETTE
T ss_pred cCCCHHHHHHHHH-HCCCEEEeeeccccc
Confidence 2467888855555 599998766655444
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-19 Score=158.74 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=106.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.....+++.+..+++ +|||+|||+|.++..+++.++.+++++|+|+.+++.|++++...++.+++++..+ |+.+++
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~-- 106 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQG-DVHNIP-- 106 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-BTTBCS--
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEc-CHHHCC--
Confidence 345577777877777 9999999999999999987678999999999999999999999998889999999 998877
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++.++||+|++..+++|+ .++..+++++.++|||||.++++.+.
T Consensus 107 ----~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 107 ----IEDNYADLIVSRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp ----SCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ----CCcccccEEEECchHhhc--cCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 466899999999999999 56899999999999999998887543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=154.06 Aligned_cols=154 Identities=16% Similarity=0.070 Sum_probs=114.2
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC-----------CCCCeEEEEe
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG-----------LQDTSDYIFV 241 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~g-----------l~~~i~~~~~ 241 (381)
+..+++.+.+.++.+|||+|||+|..+..++++ |.+|+|+|+|+.|++.|+++..... ...++++.++
T Consensus 11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 334566677788999999999999999999996 8899999999999999998764210 1247999999
Q ss_pred cCccccCcCCccccCC-CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceE-EEEcCCCCCCCCCCchhhhhhhccC
Q 047022 242 ITVNCLKPTNMTELFL-GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLS-CSTVPDQCYDEHSLGPGFIKEYIFP 319 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~-~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~-~i~~~~~~~~~~~~~~~~i~~yi~p 319 (381)
|+.+++ +.+ ++||+|++..+++|++..+...+++++.++|||||++ +++..... ... . .|
T Consensus 90 -d~~~l~------~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~-~~~-~---------~~ 151 (203)
T 1pjz_A 90 -DFFALT------ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ-ALL-E---------GP 151 (203)
T ss_dssp -CCSSST------HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS-SSS-S---------SC
T ss_pred -ccccCC------cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCc-ccc-C---------CC
Confidence 999887 233 6899999999999998777788999999999999983 34332111 000 0 01
Q ss_pred CCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 320 SGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 320 gg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
. ...+.+++. .+.+. ||+++.++...
T Consensus 152 ~-~~~~~~el~-~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 152 P-FSVPQTWLH-RVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp C-CCCCHHHHH-HTSCS-SEEEEEEEESS
T ss_pred C-CCCCHHHHH-HHhcC-CcEEEEecccc
Confidence 0 123566664 44555 99988777653
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-18 Score=152.28 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=123.8
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+++.+.+.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++...++. ++++..+ |+.+++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~-d~~~~~--- 101 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKS-EENKIP--- 101 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEEC-BTTBCS---
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEec-ccccCC---
Confidence 366777788899999999999999999999873 479999999999999999999888876 7999999 998876
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHH
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTS 331 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~ 331 (381)
+..++||+|++..+++|+ .++..+++++.++|||||.+++............ . .....+..++.+
T Consensus 102 ---~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~--------~~~~~~~~~~~~ 166 (219)
T 3dh0_A 102 ---LPDNTVDFIFMAFTFHEL--SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP--P--------PEEVYSEWEVGL 166 (219)
T ss_dssp ---SCSSCEEEEEEESCGGGC--SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC--C--------GGGSCCHHHHHH
T ss_pred ---CCCCCeeEEEeehhhhhc--CCHHHHHHHHHHHhCCCeEEEEEEecccccccCC--c--------hhcccCHHHHHH
Confidence 456889999999999999 4689999999999999999888764433221111 0 012346777755
Q ss_pred HHHhcCCcEEEEEEecch
Q 047022 332 AMTSSSRLCVEHLENIET 349 (381)
Q Consensus 332 ~l~~~~Gf~v~~~~~~~~ 349 (381)
.+. ++||+++....+..
T Consensus 167 ~l~-~~Gf~~~~~~~~~~ 183 (219)
T 3dh0_A 167 ILE-DAGIRVGRVVEVGK 183 (219)
T ss_dssp HHH-HTTCEEEEEEEETT
T ss_pred HHH-HCCCEEEEEEeeCC
Confidence 555 58999988776543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=158.43 Aligned_cols=116 Identities=18% Similarity=0.244 Sum_probs=99.0
Q ss_pred HHHHHHcC-CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+++.+. ..++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.|++++...+ ++++..+ |+.+++
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~-d~~~~~--- 105 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEA-DYSKYD--- 105 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEES-CTTTCC---
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeC-chhccC---
Confidence 45555554 457889999999999999999987 47899999999999999999875443 7999999 999887
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+. ++||+|++..+++|+++.....+++++.++|||||.++++.+.
T Consensus 106 ---~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 150 (234)
T 3dtn_A 106 ---FE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV 150 (234)
T ss_dssp ---CC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---CC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 23 8999999999999997655667999999999999998887654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=154.25 Aligned_cols=121 Identities=15% Similarity=0.272 Sum_probs=99.9
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC----CeEEEEecCccc
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQD----TSDYIFVITVNC 246 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~----~i~~~~~~d~~~ 246 (381)
..+.+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|++++...++.+ ++++..+ |+..
T Consensus 17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~ 95 (219)
T 3jwg_A 17 RLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS-SLVY 95 (219)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC-CSSS
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC-cccc
Confidence 3445555555457889999999999999999986 33799999999999999999988776654 7999999 9876
Q ss_pred cCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 247 LKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 247 l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+ ...++||+|++..+++|+++.+...+++++.++|||||.++ ++++
T Consensus 96 ~~------~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i-~~~~ 142 (219)
T 3jwg_A 96 RD------KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV-STPN 142 (219)
T ss_dssp CC------GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEE-EEEB
T ss_pred cc------cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEE-Eccc
Confidence 65 34579999999999999977667899999999999999544 4444
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=153.25 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=115.8
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
+..++..+ +++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ++++..+ |+..++
T Consensus 34 ~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~-d~~~~~---- 98 (211)
T 3e23_A 34 LTKFLGEL--PAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL-------GRPVRTM-LFHQLD---- 98 (211)
T ss_dssp HHHHHTTS--CTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH-------TSCCEEC-CGGGCC----
T ss_pred HHHHHHhc--CCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc-------CCceEEe-eeccCC----
Confidence 34445444 47889999999999999999986 889999999999999999886 4778888 998877
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSA 332 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~ 332 (381)
..++||+|++..+++|++.+++..+++++.++|||||+++++.+......... .. ......+..++.+.
T Consensus 99 ---~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~ 167 (211)
T 3e23_A 99 ---AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK----LA----RYYNYPSEEWLRAR 167 (211)
T ss_dssp ---CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT----TS----CEECCCCHHHHHHH
T ss_pred ---CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc----cc----hhccCCCHHHHHHH
Confidence 45899999999999999877899999999999999999988876543221111 10 11134577777655
Q ss_pred HHhcCC-cEEEEEEec
Q 047022 333 MTSSSR-LCVEHLENI 347 (381)
Q Consensus 333 l~~~~G-f~v~~~~~~ 347 (381)
+. ++| |+++.++..
T Consensus 168 l~-~aG~f~~~~~~~~ 182 (211)
T 3e23_A 168 YA-EAGTWASVAVESS 182 (211)
T ss_dssp HH-HHCCCSEEEEEEE
T ss_pred HH-hCCCcEEEEEEec
Confidence 55 589 999877653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=157.22 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=111.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... ++++..+ |+.++. .+++||+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~-d~~~~~-------~~~~fD~ 106 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD-----GITYIHS-RFEDAQ-------LPRRYDN 106 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS-----CEEEEES-CGGGCC-------CSSCEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEc-cHHHcC-------cCCcccE
Confidence 46789999999999999999985 67999999999999999988532 6999999 998875 4588999
Q ss_pred EEEchhhHhhChhcHHHHHHHHH-hccccCceEEEEcCCCCCCCC---------CCchhhhhhh-ccCCCCCCCHHHHHH
Q 047022 263 VFICGMIEAVGHDYMEELFSCCE-SLLAENGLSCSTVPDQCYDEH---------SLGPGFIKEY-IFPSGCLPSLRRVTS 331 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~-~~LkpgG~~~i~~~~~~~~~~---------~~~~~~i~~y-i~pgg~lp~~~~~~~ 331 (381)
|++..+++|++ ++..+++++. ++|||||+++++.++...... .....+.... ........+..++.+
T Consensus 107 v~~~~~l~~~~--~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (250)
T 2p7i_A 107 IVLTHVLEHID--DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLER 184 (250)
T ss_dssp EEEESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHH
T ss_pred EEEhhHHHhhc--CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHH
Confidence 99999999994 5799999999 999999999998876542100 0000000000 111224567777755
Q ss_pred HHHhcCCcEEEEEEec
Q 047022 332 AMTSSSRLCVEHLENI 347 (381)
Q Consensus 332 ~l~~~~Gf~v~~~~~~ 347 (381)
.+. ++||++++.+.+
T Consensus 185 ~l~-~~Gf~~~~~~~~ 199 (250)
T 2p7i_A 185 DAS-RAGLQVTYRSGI 199 (250)
T ss_dssp HHH-HTTCEEEEEEEE
T ss_pred HHH-HCCCeEEEEeee
Confidence 554 599999887654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=155.14 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=119.4
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
+..++..+.++++ +|||||||+|.++..+++ .+.+|+|+|+|+.+++.|+++....+...++++..+ |+.+++
T Consensus 56 l~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~---- 128 (235)
T 3lcc_A 56 IVHLVDTSSLPLG-RALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPKAEYFSFVKE-DVFTWR---- 128 (235)
T ss_dssp HHHHHHTTCSCCE-EEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECC-CTTTCC----
T ss_pred HHHHHHhcCCCCC-CEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEEC-chhcCC----
Confidence 3445555555554 999999999999999987 588999999999999999999876555568999999 998876
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSA 332 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~ 332 (381)
+.++||+|++..+++|+++++...+++++.++|||||++++......... ... | ...+..++.+.
T Consensus 129 ---~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~--------~--~~~~~~~~~~~ 193 (235)
T 3lcc_A 129 ---PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHV--GGP--------P--YKVDVSTFEEV 193 (235)
T ss_dssp ---CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCC--SCS--------S--CCCCHHHHHHH
T ss_pred ---CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccC--CCC--------C--ccCCHHHHHHH
Confidence 34689999999999999877899999999999999999877654322110 000 0 12456666444
Q ss_pred HHhcCCcEEEEEEecch
Q 047022 333 MTSSSRLCVEHLENIET 349 (381)
Q Consensus 333 l~~~~Gf~v~~~~~~~~ 349 (381)
.+++||+++.++....
T Consensus 194 -l~~~Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 194 -LVPIGFKAVSVEENPH 209 (235)
T ss_dssp -HGGGTEEEEEEEECTT
T ss_pred -HHHcCCeEEEEEecCC
Confidence 4568999998887643
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=154.65 Aligned_cols=119 Identities=14% Similarity=0.198 Sum_probs=99.9
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC----CeEEEEecCcccc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQD----TSDYIFVITVNCL 247 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~----~i~~~~~~d~~~l 247 (381)
.+.+++.+...++.+|||||||+|.++..+++. ...+|+|+|+|+.+++.|++++...++.+ ++++..+ |+...
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~ 96 (217)
T 3jwh_A 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG-ALTYQ 96 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC-CTTSC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC-Ccccc
Confidence 345555555567889999999999999999986 33799999999999999999988777654 7999999 98665
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+ ...++||+|++..+++|+++.+...+++++.++|||||.++++.
T Consensus 97 ~------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 97 D------KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp C------GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred c------ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 5 34578999999999999987677999999999999999655543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=157.10 Aligned_cols=165 Identities=13% Similarity=0.100 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc
Q 047022 165 LEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV 244 (381)
Q Consensus 165 l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~ 244 (381)
+...+......+++.+...++.+|||||||+|.++..+++....+|+++|+|+.+++.++++.... .++++..+ |+
T Consensus 74 ~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~-d~ 149 (254)
T 1xtp_A 74 VHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILA-SM 149 (254)
T ss_dssp GHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEES-CG
T ss_pred cCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEc-cH
Confidence 344455666778888877788999999999999999998865568999999999999999987543 47999999 99
Q ss_pred cccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCC
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLP 324 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp 324 (381)
.+++ ++.++||+|++..+++|++++++..+++++.++|||||+++++.+...... +.... .......
T Consensus 150 ~~~~------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------~~~~~-~~~~~~~ 216 (254)
T 1xtp_A 150 ETAT------LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR------FLVDK-EDSSLTR 216 (254)
T ss_dssp GGCC------CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC------EEEET-TTTEEEB
T ss_pred HHCC------CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc------ceecc-cCCcccC
Confidence 8876 456899999999999999877789999999999999999888775322111 10000 0111234
Q ss_pred CHHHHHHHHHhcCCcEEEEEEec
Q 047022 325 SLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
+..++.+.+. ++||+++.++..
T Consensus 217 ~~~~~~~~l~-~aGf~~~~~~~~ 238 (254)
T 1xtp_A 217 SDIHYKRLFN-ESGVRVVKEAFQ 238 (254)
T ss_dssp CHHHHHHHHH-HHTCCEEEEEEC
T ss_pred CHHHHHHHHH-HCCCEEEEeeec
Confidence 6677755554 589999887654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=166.92 Aligned_cols=161 Identities=15% Similarity=0.069 Sum_probs=113.9
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc-----C-C-CCCeEEEEecCccccCcCCc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEA-----G-L-QDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~-----g-l-~~~i~~~~~~d~~~l~~~~l 252 (381)
+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|++++... | + ..++++..+ |+.++.....
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~-d~~~l~~~~~ 159 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKG-FIENLATAEP 159 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEES-CTTCGGGCBS
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEc-cHHHhhhccc
Confidence 457899999999999999999987 4679999999999999999987654 3 2 258999999 9988610000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSA 332 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~ 332 (381)
..+++++||+|++..+++|++ ++..+++++.++|||||+++++.+................+........+..++.+.
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLST--NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRL 237 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHH
T ss_pred CCCCCCCEEEEEEccchhcCC--CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHH
Confidence 014668999999999999994 589999999999999999888654322110000000111122222344567777665
Q ss_pred HHhcCCcEEEEEEe
Q 047022 333 MTSSSRLCVEHLEN 346 (381)
Q Consensus 333 l~~~~Gf~v~~~~~ 346 (381)
+. ++||.++.+..
T Consensus 238 l~-~aGF~~v~~~~ 250 (383)
T 4fsd_A 238 VA-EAGFRDVRLVS 250 (383)
T ss_dssp HH-HTTCCCEEEEE
T ss_pred HH-HCCCceEEEEe
Confidence 55 58998665443
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=164.13 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC--CCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ--DTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~--~~i~~~~~~d~~~l~ 248 (381)
.....+++.+...++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....++. .++++..+ |+.+++
T Consensus 70 ~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-d~~~~~ 146 (299)
T 3g2m_A 70 SEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG-DMSAFA 146 (299)
T ss_dssp HHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEEC-BTTBCC
T ss_pred HHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeC-chhcCC
Confidence 344566677765444 9999999999999999986 889999999999999999998876532 57999999 999887
Q ss_pred cCCccccCCCcccEEEEc-hhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 249 PTNMTELFLGNFSTVFIC-GMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~-~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
..++||+|++. .+++|+++++...+++++.++|||||++++++++..
T Consensus 147 -------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 147 -------LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp -------CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred -------cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 35899998865 667777666789999999999999999999876643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=162.72 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=123.1
Q ss_pred cCCCCCCEEEEecCCchHHHHHHH--HhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 180 VKLVKGQEVLEIGCGWGTLAIEIV--RQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~G~~~~~la--~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
..++++.+|||||||+|.++..++ ..++.+|+|+|+|+.+++.|++++...++.+++++..+ |+.+++ +.
T Consensus 114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~------~~- 185 (305)
T 3ocj_A 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ-DAWKLD------TR- 185 (305)
T ss_dssp HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEEC-CGGGCC------CC-
T ss_pred hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-chhcCC------cc-
Confidence 345788999999999999999985 33678999999999999999999998888878999999 999987 34
Q ss_pred CcccEEEEchhhHhhChh-cHHHHHHHHHhccccCceEEEEcCCCCCCC----------CCCchhhhhhhccCCC-----
Q 047022 258 GNFSTVFICGMIEAVGHD-YMEELFSCCESLLAENGLSCSTVPDQCYDE----------HSLGPGFIKEYIFPSG----- 321 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~----------~~~~~~~i~~yi~pgg----- 321 (381)
++||+|++..+++|+++. ....+++++.++|||||+++++........ +........++.++..
T Consensus 186 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (305)
T 3ocj_A 186 EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRW 265 (305)
T ss_dssp SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSC
T ss_pred CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhh
Confidence 899999999999999542 334589999999999999988764432110 0111112233333221
Q ss_pred -CCCCHHHHHHHHHhcCCcEEEEEEecchhH
Q 047022 322 -CLPSLRRVTSAMTSSSRLCVEHLENIETHY 351 (381)
Q Consensus 322 -~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y 351 (381)
.+.+..++.+.+. ++||++++++....++
T Consensus 266 ~~~~~~~~~~~~l~-~aGF~~v~~~~~~~~~ 295 (305)
T 3ocj_A 266 NALRTHAQTRAQLE-EAGFTDLRFEDDRARL 295 (305)
T ss_dssp CCCCCHHHHHHHHH-HTTCEEEEEECCTTSS
T ss_pred hccCCHHHHHHHHH-HCCCEEEEEEcccCce
Confidence 3467888866655 5899999888755543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=159.77 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=116.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+.+++.+...++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++. ++++..+ |+.+++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~-d~~~~~-- 89 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTG-YAENLA-- 89 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT-------TEEEECC-CTTSCC--
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc-------CCEEEEC-chhhCC--
Confidence 4455777888888899999999999999999998 5899999999999998876553 7999999 998877
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC-CCCCCCHHHH
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP-SGCLPSLRRV 329 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p-gg~lp~~~~~ 329 (381)
+++++||+|++..+++|+ .++..+++++.++|| ||++++..++..................+ +...++..++
T Consensus 90 ----~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (261)
T 3ege_A 90 ----LPDKSVDGVISILAIHHF--SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQI 162 (261)
T ss_dssp ----SCTTCBSEEEEESCGGGC--SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHH
T ss_pred ----CCCCCEeEEEEcchHhhc--cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHH
Confidence 566899999999999999 578999999999999 99876665442211100000111111111 1345666666
Q ss_pred HHHHHhcCCcEEEEEEec
Q 047022 330 TSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 330 ~~~l~~~~Gf~v~~~~~~ 347 (381)
. +.+++||+++.++.+
T Consensus 163 ~--~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 163 N--LLQENTKRRVEAIPF 178 (261)
T ss_dssp H--HHHHHHCSEEEEEEC
T ss_pred H--HHHHcCCCceeEEEe
Confidence 5 555689988877765
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=154.96 Aligned_cols=114 Identities=20% Similarity=0.237 Sum_probs=99.3
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
...+++.+...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|+++.. ..++++..+ |+.+++
T Consensus 33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~-d~~~~~--- 103 (253)
T 3g5l_A 33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEH-GAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQK-AIEDIA--- 103 (253)
T ss_dssp HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHCC----CTTEEEEEC-CGGGCC---
T ss_pred HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEc-chhhCC---
Confidence 345666777668899999999999999999987 55 99999999999999998864 357999999 998887
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++.++||+|++..+++|+ .++..+++++.++|||||.+++++++
T Consensus 104 ---~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 104 ---IEPDAYNVVLSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp ---CCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---CCCCCeEEEEEchhhhhh--hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 456899999999999999 56899999999999999999887654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-18 Score=153.74 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=114.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
+++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ...++++..+ |+.+++ +++++||+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~-d~~~~~------~~~~~fD~ 119 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG----EGPDLSFIKG-DLSSLP------FENEQFEA 119 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT----CBTTEEEEEC-BTTBCS------SCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc----ccCCceEEEc-chhcCC------CCCCCccE
Confidence 47889999999999999999996 889999999999999998874 2357999999 999887 45689999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC-CCCCCCHHHHHHHHHhcCCcEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP-SGCLPSLRRVTSAMTSSSRLCV 341 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p-gg~lp~~~~~~~~l~~~~Gf~v 341 (381)
|++..+++|+ .++..+++++.++|+|||+++++.+....... ...+...+-.+ .....+..++.+.+ +++||++
T Consensus 120 v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~ 194 (242)
T 3l8d_A 120 IMAINSLEWT--EEPLRALNEIKRVLKSDGYACIAILGPTAKPR--ENSYPRLYGKDVVCNTMMPWEFEQLV-KEQGFKV 194 (242)
T ss_dssp EEEESCTTSS--SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGG--GGGGGGGGTCCCSSCCCCHHHHHHHH-HHTTEEE
T ss_pred EEEcChHhhc--cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhh--hhhhhhhccccccccCCCHHHHHHHH-HHcCCEE
Confidence 9999999999 46889999999999999998888755432211 11222222111 22345666775544 4599999
Q ss_pred EEEEec
Q 047022 342 EHLENI 347 (381)
Q Consensus 342 ~~~~~~ 347 (381)
++...+
T Consensus 195 ~~~~~~ 200 (242)
T 3l8d_A 195 VDGIGV 200 (242)
T ss_dssp EEEEEE
T ss_pred EEeecc
Confidence 887754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=160.96 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=93.6
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++ .+...++++..+ |+.+++ +.+++|
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~~~-d~~~~~------~~~~~f 105 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI--AGVDRKVQVVQA-DARAIP------LPDESV 105 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT--TTSCTTEEEEES-CTTSCC------SCTTCE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--hccCCceEEEEc-ccccCC------CCCCCe
Confidence 5678899999999999999999986 889999999999999999987 233458999999 998876 456899
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|+|++..+++|++ +...+++++.++|||||.+++..
T Consensus 106 D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 106 HGVIVVHLWHLVP--DWPKVLAEAIRVLKPGGALLEGW 141 (263)
T ss_dssp EEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCchhhcC--CHHHHHHHHHHHCCCCcEEEEEe
Confidence 9999999999995 58999999999999999988773
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.9e-17 Score=141.76 Aligned_cols=114 Identities=16% Similarity=0.228 Sum_probs=100.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....++. ++++..+ |+.+++
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~-d~~~~~------ 93 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVV-DLNNLT------ 93 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEEC-CGGGCC------
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEc-chhhCC------
Confidence 4555666667889999999999999999996 889999999999999999999888774 6999999 998876
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+ .++||+|++..+++|++.++...+++++.++|||||.+++..
T Consensus 94 ~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 94 F-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp C-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred C-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3 588999999999999987789999999999999999976644
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=151.39 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=113.2
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++.+|||||||+|.++..+++....+|+++|+|+.+++.|+++....+ ..++++..+ |+.+++ +..++||+|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~-d~~~~~------~~~~~fD~v 150 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCC-GLQDFT------PEPDSYDVI 150 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEEC-CGGGCC------CCSSCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEc-ChhhcC------CCCCCEEEE
Confidence 688999999999999999888655699999999999999999987654 236899999 998876 345689999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
++..+++|+++.....+++++.++|||||+++++.+..... .+... ..+....+..++.+.+. ++||+++.
T Consensus 151 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~l~-~aGf~~~~ 221 (241)
T 2ex4_A 151 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG------VILDD--VDSSVCRDLDVVRRIIC-SAGLSLLA 221 (241)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS------EEEET--TTTEEEEBHHHHHHHHH-HTTCCEEE
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc------ceecc--cCCcccCCHHHHHHHHH-HcCCeEEE
Confidence 99999999987667799999999999999988876543210 00000 01112346777755555 58999988
Q ss_pred EEec
Q 047022 344 LENI 347 (381)
Q Consensus 344 ~~~~ 347 (381)
.+..
T Consensus 222 ~~~~ 225 (241)
T 2ex4_A 222 EERQ 225 (241)
T ss_dssp EEEC
T ss_pred eeec
Confidence 7654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-19 Score=158.30 Aligned_cols=180 Identities=13% Similarity=0.168 Sum_probs=121.0
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHH----HHcCCCCCeEEEEecCccccCcCC
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKV----KEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~----~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
++.+.+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.+.+++ ...+++ ++++..+ |+.+++
T Consensus 20 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~-d~~~l~--- 94 (218)
T 3mq2_A 20 FEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWA-TAERLP--- 94 (218)
T ss_dssp HHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEEC-CSTTCC---
T ss_pred HHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEec-chhhCC---
Confidence 44455678899999999999999999987 4789999999999888644333 234543 8999999 999887
Q ss_pred ccccCCCcccEEE---EchhhH--hhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCH
Q 047022 252 MTELFLGNFSTVF---ICGMIE--AVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSL 326 (381)
Q Consensus 252 l~~~~~~~fD~Iv---s~~~l~--~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~ 326 (381)
+..++ |.|+ +....+ |+ .+...+++++.++|||||+++++.....+... ..... -.|.......
T Consensus 95 ---~~~~~-d~v~~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~--~~~~~~~~~~ 163 (218)
T 3mq2_A 95 ---PLSGV-GELHVLMPWGSLLRGVL--GSSPEMLRGMAAVCRPGASFLVALNLHAWRPS---VPEVG--EHPEPTPDSA 163 (218)
T ss_dssp ---SCCCE-EEEEEESCCHHHHHHHH--TSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTB---CGGGT--TCCCCCHHHH
T ss_pred ---CCCCC-CEEEEEccchhhhhhhh--ccHHHHHHHHHHHcCCCcEEEEEecccccccc---ccccc--cCCccchHHH
Confidence 33344 5555 333333 66 34589999999999999998886543221111 11111 1111111112
Q ss_pred HHHHHHHHhcCCcEEEEEEecchhHHHHH-HHHHHHHHHhHHHHHhc
Q 047022 327 RRVTSAMTSSSRLCVEHLENIETHYYQKL-RRWRQKFREKHSEILAL 372 (381)
Q Consensus 327 ~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl-~~W~~~f~~~~~~~~~~ 372 (381)
.+.+..+.+++||++.+++.+..++..++ ..|.++|...++++..+
T Consensus 164 ~~~l~~~l~~aGf~i~~~~~~~~~~~~~~~~~w~~~~~~~r~~~~~~ 210 (218)
T 3mq2_A 164 DEWLAPRYAEAGWKLADCRYLEPEEVAGLETSWTRRLHSSRDRFDVL 210 (218)
T ss_dssp HHHHHHHHHHTTEEEEEEEEECHHHHHHTCCTHHHHHTTCCSSCSEE
T ss_pred HHHHHHHHHHcCCCceeeeccchhhhhhhHHHHHHHHcccccceeeE
Confidence 22233444568999999999988887655 78999987766554433
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9e-18 Score=157.21 Aligned_cols=116 Identities=21% Similarity=0.332 Sum_probs=99.9
Q ss_pred HHHHHHHc-CCCCCCEEEEecCCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 173 VSVLIEKV-KLVKGQEVLEIGCGWGTLAIEIVRQ-T-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 173 ~~~l~~~l-~~~~~~~VLDiGcG~G~~~~~la~~-~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+..+++.+ .+.++.+|||||||+|.++..+++. + +.+|+|+|+|+.+++.|+++....+. ++++..+ |+.+++
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~-d~~~~~- 85 (284)
T 3gu3_A 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEG-DATEIE- 85 (284)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEES-CTTTCC-
T ss_pred HHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEc-chhhcC-
Confidence 44555554 5668899999999999999999987 3 57999999999999999999876554 7999999 999877
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|++..+++|+ .++..+++++.++|||||++++..++
T Consensus 86 ------~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 86 ------LNDKYDIAICHAFLLHM--TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp ------CSSCEEEEEEESCGGGC--SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ------cCCCeeEEEECChhhcC--CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 24789999999999999 45789999999999999999888766
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-18 Score=151.80 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=113.4
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ .++.+... |+.++....
T Consensus 42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~-~~~~~~~~~-- 110 (227)
T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA-------GAGEVHLA-SYAQLAEAK-- 110 (227)
T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT-------CSSCEEEC-CHHHHHTTC--
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh-------cccccchh-hHHhhcccc--
Confidence 35566665567789999999999999999986 88999999999999999887 36788888 887771000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC-chhhhhh-h-ccCC------CCCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL-GPGFIKE-Y-IFPS------GCLP 324 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~-~~~~i~~-y-i~pg------g~lp 324 (381)
....++||+|++..+++ . .++..+++++.++|||||+++++.++........ ...|... + -+.+ ....
T Consensus 111 ~~~~~~fD~v~~~~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (227)
T 3e8s_A 111 VPVGKDYDLICANFALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFR 187 (227)
T ss_dssp SCCCCCEEEEEEESCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEEC
T ss_pred cccCCCccEEEECchhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEe
Confidence 11345699999999998 4 5678999999999999999999887643221110 0111100 0 0011 1245
Q ss_pred CHHHHHHHHHhcCCcEEEEEEe
Q 047022 325 SLRRVTSAMTSSSRLCVEHLEN 346 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~~ 346 (381)
+.+++.+.+. ++||++++++.
T Consensus 188 ~~~~~~~~l~-~aGf~~~~~~~ 208 (227)
T 3e8s_A 188 TLASWLNALD-MAGLRLVSLQE 208 (227)
T ss_dssp CHHHHHHHHH-HTTEEEEEEEC
T ss_pred cHHHHHHHHH-HcCCeEEEEec
Confidence 7888866665 59999998775
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-18 Score=168.50 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=122.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEE
Q 047022 162 HEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSD-YIF 240 (381)
Q Consensus 162 ~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~-~~~ 240 (381)
...+.+.+.+..+.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ ++..... +..
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~ 159 (416)
T 4e2x_A 85 SSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEK 159 (416)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCCSH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeeech
Confidence 34566777788888999998889999999999999999999985 88999999999999998876 3321111 112
Q ss_pred ecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCC
Q 047022 241 VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPS 320 (381)
Q Consensus 241 ~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pg 320 (381)
. +...++ +.+++||+|++.++++|++ ++..+++++.++|||||++++.+++.... .....|. ....+.
T Consensus 160 ~-~~~~l~------~~~~~fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~~~~~~~-~~~~~~ 227 (416)
T 4e2x_A 160 A-TADDVR------RTEGPANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDI--VAKTSFD-QIFDEH 227 (416)
T ss_dssp H-HHHHHH------HHHCCEEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHHH--HHHTCGG-GCSTTC
T ss_pred h-hHhhcc------cCCCCEEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHHh--hhhcchh-hhhhhh
Confidence 2 333333 3458899999999999994 68999999999999999999987652110 0000111 111233
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 321 GCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 321 g~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
...++..++.+.+ +++||++++++.+.
T Consensus 228 ~~~~s~~~l~~ll-~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 228 FFLFSATSVQGMA-QRCGFELVDVQRLP 254 (416)
T ss_dssp CEECCHHHHHHHH-HHTTEEEEEEEEEC
T ss_pred hhcCCHHHHHHHH-HHcCCEEEEEEEcc
Confidence 3456777775554 45999999887754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=148.24 Aligned_cols=156 Identities=15% Similarity=0.286 Sum_probs=115.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEecCccccCcCCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL----QDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl----~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....++ .+++++..+ |...++ +..+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~------~~~~ 100 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVE-NASSLS------FHDS 100 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEEC-CTTSCC------SCTT
T ss_pred CCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEe-cccccC------CCCC
Confidence 47889999999999999999996 88999999999999999999877665 235899999 998876 4568
Q ss_pred cccEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhh---------ccC---------
Q 047022 259 NFSTVFICGMIEAVGH-DYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEY---------IFP--------- 319 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~y---------i~p--------- 319 (381)
+||+|++..+++|+++ .....+++++.++|||||+++++.+............+...+ ...
T Consensus 101 ~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (235)
T 3sm3_A 101 SFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEF 180 (235)
T ss_dssp CEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEE
T ss_pred ceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcce
Confidence 9999999999999953 234489999999999999988876543221110000000000 000
Q ss_pred CCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 320 SGCLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 320 gg~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
.....+.+++.+.+. ++||++++++..
T Consensus 181 ~~~~~~~~~l~~ll~-~aGf~~~~~~~~ 207 (235)
T 3sm3_A 181 IAHHFTEKELVFLLT-DCRFEIDYFRVK 207 (235)
T ss_dssp EEECBCHHHHHHHHH-TTTEEEEEEEEE
T ss_pred eeEeCCHHHHHHHHH-HcCCEEEEEEec
Confidence 012467788855555 599999887653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=153.20 Aligned_cols=162 Identities=13% Similarity=0.110 Sum_probs=124.1
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+++.+...+..+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.+++++..+ |+.+ +
T Consensus 160 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~----- 231 (332)
T 3i53_A 160 GIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVG-SFFD-P----- 231 (332)
T ss_dssp TGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC-CTTS-C-----
T ss_pred HHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecC-CCCC-C-----
Confidence 3445555566789999999999999999987 6789999999 9999999999999888889999999 9863 2
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHH
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAM 333 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l 333 (381)
.+ .+||+|++..+++|+++++...++++++++|||||++++..............+.. ....+++...+..++.+.+
T Consensus 232 -~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~-~~~~~~~~~~t~~e~~~ll 308 (332)
T 3i53_A 232 -LP-AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLR-MLTYFGGKERSLAELGELA 308 (332)
T ss_dssp -CC-CSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHH-HHHHHSCCCCCHHHHHHHH
T ss_pred -CC-CCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHH-HHhhCCCCCCCHHHHHHHH
Confidence 12 38999999999999987778999999999999999988865432221110111111 1123567778888885555
Q ss_pred HhcCCcEEEEEEecc
Q 047022 334 TSSSRLCVEHLENIE 348 (381)
Q Consensus 334 ~~~~Gf~v~~~~~~~ 348 (381)
. ++||+++++...+
T Consensus 309 ~-~aGf~~~~~~~~~ 322 (332)
T 3i53_A 309 A-QAGLAVRAAHPIS 322 (332)
T ss_dssp H-HTTEEEEEEEECS
T ss_pred H-HCCCEEEEEEECC
Confidence 4 5999998887654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=152.23 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=116.7
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.+.+.++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++. .++++..+ |+.+++
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~-d~~~~~------ 113 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY------PHLHFDVA-DARNFR------ 113 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC------TTSCEEEC-CTTTCC------
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC------CCCEEEEC-ChhhCC------
Confidence 456677778899999999999999999998 6899999999999999998874 47899999 998877
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCC-CCC-Cchhhhhhhc-----cC-CCCCCCH
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYD-EHS-LGPGFIKEYI-----FP-SGCLPSL 326 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~-~~~-~~~~~i~~yi-----~p-gg~lp~~ 326 (381)
..++||+|++..+++|++ ++..+++++.++|||||++++..+..... ... .....+...- .+ ....++.
T Consensus 114 -~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (279)
T 3ccf_A 114 -VDKPLDAVFSNAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSI 190 (279)
T ss_dssp -CSSCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCH
T ss_pred -cCCCcCEEEEcchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCH
Confidence 247899999999999994 68999999999999999988887654321 000 0001111110 01 1235677
Q ss_pred HHHHHHHHhcCCcEEEEEEec
Q 047022 327 RRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 327 ~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
.++.+.+. ++||+++.++..
T Consensus 191 ~~~~~~l~-~aGf~~~~~~~~ 210 (279)
T 3ccf_A 191 GEYVNILE-KQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHH-HHTEEEEEEEEE
T ss_pred HHHHHHHH-HcCCEEEEEEEe
Confidence 77755555 589998876543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-18 Score=156.89 Aligned_cols=165 Identities=10% Similarity=0.081 Sum_probs=124.8
Q ss_pred hcccCChhHHHHhhhhhcCCCcccccccccCCCCceeecccCC-CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCch
Q 047022 118 ISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKS-KHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWG 196 (381)
Q Consensus 118 ~~~~~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~-~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G 196 (381)
.....+...-.+.++++|+...++ |+..+...+..+..-|.. ......+...+..+.-...+.++++++|||||||+|
T Consensus 56 vl~~~~~~~l~~~~~~~y~~~~~~-~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G 134 (298)
T 3fpf_A 56 ILDDAEMNHALSLIRKFYVNLGMK-LEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPL 134 (298)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSS
T ss_pred HhcChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCcc
Confidence 344466777888999999999999 988887665333221110 001111223333333345678899999999999998
Q ss_pred HHH-HHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChh
Q 047022 197 TLA-IEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD 275 (381)
Q Consensus 197 ~~~-~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~ 275 (381)
.++ +.+++.++++|+|+|+|++|++.|+++++..|+ +++++..+ |+.+++ +++||+|++... + .
T Consensus 135 ~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~g-Da~~l~--------d~~FDvV~~~a~---~--~ 199 (298)
T 3fpf_A 135 PLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITG-DETVID--------GLEFDVLMVAAL---A--E 199 (298)
T ss_dssp CHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEES-CGGGGG--------GCCCSEEEECTT---C--S
T ss_pred HHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEEC-chhhCC--------CCCcCEEEECCC---c--c
Confidence 766 445555799999999999999999999999898 79999999 998765 378999998654 3 4
Q ss_pred cHHHHHHHHHhccccCceEEEEc
Q 047022 276 YMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 276 ~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+...+++++.++|||||++++..
T Consensus 200 d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 200 PKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEEc
Confidence 67899999999999999988765
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=151.15 Aligned_cols=156 Identities=16% Similarity=0.170 Sum_probs=116.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+....+++.+...++.+|||||||+|.++..+++. ++.+++++|+|+.+++.++++. .++++..+ |+.+++
T Consensus 20 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~-d~~~~~- 91 (259)
T 2p35_A 20 RPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKA-DLATWK- 91 (259)
T ss_dssp HHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEEC-CTTTCC-
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEEC-ChhhcC-
Confidence 44457788888888999999999999999999987 4789999999999999998871 47999999 998876
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC-ch------hhhhhhc---cC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL-GP------GFIKEYI---FP 319 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~-~~------~~i~~yi---~p 319 (381)
.+++||+|++..+++|+ .++..+++++.++|||||.++++.+......... .. .|..... .+
T Consensus 92 ------~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
T 2p35_A 92 ------PAQKADLLYANAVFQWV--PDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLR 163 (259)
T ss_dssp ------CSSCEEEEEEESCGGGS--TTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC------
T ss_pred ------ccCCcCEEEEeCchhhC--CCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhcccccc
Confidence 34789999999999999 4689999999999999999998876542211000 00 0111100 11
Q ss_pred CCCCCCHHHHHHHHHhcCCcEEEE
Q 047022 320 SGCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 320 gg~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
....++..++.+.+ +++||.+..
T Consensus 164 ~~~~~~~~~~~~~l-~~aGf~v~~ 186 (259)
T 2p35_A 164 RKPLPPPSDYFNAL-SPKSSRVDV 186 (259)
T ss_dssp -CCCCCHHHHHHHH-GGGEEEEEE
T ss_pred ccCCCCHHHHHHHH-HhcCCceEE
Confidence 23456777775555 458997643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=150.78 Aligned_cols=106 Identities=20% Similarity=0.279 Sum_probs=94.4
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....++ ++++..+ |+.+++ +. ++||+|
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~-d~~~~~------~~-~~fD~v 105 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQ-DISNLN------IN-RKFDLI 105 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECC-CGGGCC------CS-CCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEec-ccccCC------cc-CCceEE
Confidence 6789999999999999999986 88999999999999999999887765 6999999 998876 23 789999
Q ss_pred EEch-hhHhhCh-hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 264 FICG-MIEAVGH-DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 264 vs~~-~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++.. +++|++. .++..+++++.++|||||.+++++++
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred EEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9998 9999943 57889999999999999999887664
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=152.16 Aligned_cols=167 Identities=13% Similarity=0.151 Sum_probs=129.4
Q ss_pred HHHHHHHHcCC--CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 172 KVSVLIEKVKL--VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 172 ~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
....+++.+.. .++.+|||+|||+|.++..+++. ++.+++++|++ .+++.|++++...++.+++++..+ |+.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~ 228 (335)
T 2r3s_A 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAG-SAFEVD 228 (335)
T ss_dssp HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEES-CTTTSC
T ss_pred hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEec-ccccCC
Confidence 34567777776 78899999999999999999987 57899999999 999999999998888778999999 998765
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCc----hhhhhhhccCCCCCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLG----PGFIKEYIFPSGCLP 324 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~----~~~i~~yi~pgg~lp 324 (381)
++ +.||+|++..+++|+++++...+++++.++|+|||++++..+.......... .++......+++...
T Consensus 229 ------~~-~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (335)
T 2r3s_A 229 ------YG-NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAY 301 (335)
T ss_dssp ------CC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCC
T ss_pred ------CC-CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcC
Confidence 22 4599999999999998777889999999999999997776544321111111 111111223467778
Q ss_pred CHHHHHHHHHhcCCcEEEEEEecc
Q 047022 325 SLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
+..++.+.+. ++||+++++..+.
T Consensus 302 t~~~~~~ll~-~aGf~~~~~~~~~ 324 (335)
T 2r3s_A 302 TFAEYESMFS-NAGFSHSQLHSLP 324 (335)
T ss_dssp CHHHHHHHHH-HTTCSEEEEECCT
T ss_pred CHHHHHHHHH-HCCCCeeeEEECC
Confidence 8888865555 5899998887654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=144.02 Aligned_cols=172 Identities=13% Similarity=0.190 Sum_probs=126.5
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.+. .++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++. .++..+ |+.+... .
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--------~~~~~~-d~~~~~~----~ 88 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--------DHVVLG-DIETMDM----P 88 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--------SEEEES-CTTTCCC----C
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--------CcEEEc-chhhcCC----C
Confidence 4455554 67889999999999999999987 799999999999999888653 367888 8876321 1
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhh-hhh-------ccC-CCCCCC
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFI-KEY-------IFP-SGCLPS 325 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i-~~y-------i~p-gg~lp~ 325 (381)
+.+++||+|++..+++|++ ++..+++++.++|+|||.++++.++...... ..... ..+ ..+ .....+
T Consensus 89 ~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (230)
T 3cc8_A 89 YEEEQFDCVIFGDVLEHLF--DPWAVIEKVKPYIKQNGVILASIPNVSHISV--LAPLLAGNWTYTEYGLLDKTHIRFFT 164 (230)
T ss_dssp SCTTCEEEEEEESCGGGSS--CHHHHHHHTGGGEEEEEEEEEEEECTTSHHH--HHHHHTTCCCCBSSSTTBTTCCCCCC
T ss_pred CCCCccCEEEECChhhhcC--CHHHHHHHHHHHcCCCCEEEEEeCCcchHHH--HHHHhcCCceeccCCCCCcceEEEec
Confidence 4568899999999999994 5789999999999999999998876432100 00000 000 011 123467
Q ss_pred HHHHHHHHHhcCCcEEEEEEecchhHHHHHHHHHHHHHHhHH
Q 047022 326 LRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHS 367 (381)
Q Consensus 326 ~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f~~~~~ 367 (381)
..++.+.+. ++||+++.++.+..++ .+...|.+++.....
T Consensus 165 ~~~~~~~l~-~~Gf~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 204 (230)
T 3cc8_A 165 FNEMLRMFL-KAGYSISKVDRVYVDH-KMYEPLIEELYGICK 204 (230)
T ss_dssp HHHHHHHHH-HTTEEEEEEEEEECCC-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCeEEEEEecccCh-hhccchHHHHHHHHH
Confidence 777755555 5899999998887776 677888888766554
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-18 Score=163.45 Aligned_cols=176 Identities=19% Similarity=0.142 Sum_probs=134.6
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+.+++.+...++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++.+++.+++++..+ |+++++
T Consensus 39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~-d~~~~~---- 112 (348)
T 2y1w_A 39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPG-KVEEVS---- 112 (348)
T ss_dssp HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEES-CTTTCC----
T ss_pred HHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEc-chhhCC----
Confidence 346677777778999999999999999999986445999999996 89999999999999889999999 998876
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC---------chhhhhhhccCCCCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL---------GPGFIKEYIFPSGCL 323 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~---------~~~~i~~yi~pgg~l 323 (381)
..++||+|++..+++|+..+.....+.++.++|||||.++++..+........ ..++....++||..+
T Consensus 113 ---~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~~~~~~~~~~~w~~~~~~g~d~ 189 (348)
T 2y1w_A 113 ---LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDL 189 (348)
T ss_dssp ---CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHGGGCCSCBTTBCC
T ss_pred ---CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCcEEEEEecchHHhhhhccccCcccccccCcccH
Confidence 23689999999999998777788889999999999999876543311110000 112333347899999
Q ss_pred CCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHHH
Q 047022 324 PSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWR 359 (381)
Q Consensus 324 p~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~ 359 (381)
+++.++... +.....+++..+++.+|+.++..|.
T Consensus 190 ~~l~~~~~~--~~f~~p~~d~~~~~~~~~~~~~~~~ 223 (348)
T 2y1w_A 190 SALRGAAVD--EYFRQPVVDTFDIRILMAKSVKYTV 223 (348)
T ss_dssp GGGHHHHHH--HHHTSCEEECCCGGGBCBCCEEEEE
T ss_pred HHhhhHHHh--hhccCCeEEeECCeeecCcceEEEE
Confidence 988776432 1123357778888888988887776
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-16 Score=150.99 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=126.9
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
...+++.+...++.+|||||||+|.++..++++ ++.+++++|+ +.+++.|++++...++.+++++..+ |+.+ +
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~-d~~~-~--- 264 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPG-DFFE-T--- 264 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC-CTTT-C---
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEecc-CCCC-C---
Confidence 456777888888899999999999999999987 6789999999 9999999999999898889999999 9873 2
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhh--hhhccCCCCCCCHHHH
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFI--KEYIFPSGCLPSLRRV 329 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i--~~yi~pgg~lp~~~~~ 329 (381)
++ .+||+|++..++++++++....+++++.++|||||+++|............ ..+. .....+++...+..++
T Consensus 265 ---~p-~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d~~~~~~~~g~~~t~~e~ 339 (369)
T 3gwz_A 265 ---IP-DGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVDLLLLVLVGGAERSESEF 339 (369)
T ss_dssp ---CC-SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHHHHHHHHHSCCCBCHHHH
T ss_pred ---CC-CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhhHHHHhhcCCccCCHHHH
Confidence 22 389999999999999876667899999999999999877543222111000 1111 1123456778888888
Q ss_pred HHHHHhcCCcEEEEEEe
Q 047022 330 TSAMTSSSRLCVEHLEN 346 (381)
Q Consensus 330 ~~~l~~~~Gf~v~~~~~ 346 (381)
.+.+ +++||+++++..
T Consensus 340 ~~ll-~~aGf~~~~~~~ 355 (369)
T 3gwz_A 340 AALL-EKSGLRVERSLP 355 (369)
T ss_dssp HHHH-HTTTEEEEEEEE
T ss_pred HHHH-HHCCCeEEEEEE
Confidence 5555 469999988866
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=149.38 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=109.9
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEecCccccCcCCccccCC
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEA-GLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~-gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
...++.+|||||||+|.++..+++. .+.+|+|+|+|+.+++.|++++... +...++++..+ |+.+++ +..
T Consensus 33 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~-d~~~~~------~~~ 105 (299)
T 3g5t_A 33 HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKIS-SSDDFK------FLG 105 (299)
T ss_dssp CCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEEC-CTTCCG------GGC
T ss_pred hcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEc-CHHhCC------ccc
Confidence 3468899999999999999999963 5789999999999999999998886 45568999999 998876 334
Q ss_pred ------CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC-CCCCCCCchhhhhhhccC----CCCC--C
Q 047022 258 ------GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ-CYDEHSLGPGFIKEYIFP----SGCL--P 324 (381)
Q Consensus 258 ------~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~-~~~~~~~~~~~i~~yi~p----gg~l--p 324 (381)
++||+|++..+++|+ ++..+++++.++|||||.+++..... ...........+..+... +.+. |
T Consensus 106 ~~~~~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p 182 (299)
T 3g5t_A 106 ADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQP 182 (299)
T ss_dssp TTTTTSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTT
T ss_pred cccccCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhch
Confidence 799999999999999 58999999999999999977632211 111111223344444321 2223 4
Q ss_pred CHHHHHHHHHhcCCc
Q 047022 325 SLRRVTSAMTSSSRL 339 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf 339 (381)
....+ ..+.++.||
T Consensus 183 ~~~~~-~~~l~~~gf 196 (299)
T 3g5t_A 183 GRSRL-RNMLKDSHL 196 (299)
T ss_dssp HHHHH-HTTTTTCCC
T ss_pred hhHHH-HHhhhccCC
Confidence 44444 555567899
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=153.99 Aligned_cols=165 Identities=13% Similarity=0.067 Sum_probs=125.0
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+++.+.++++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.+++++..+ |+.+..
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~---- 245 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEG-DFFKPL---- 245 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC-CTTSCC----
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeC-CCCCcC----
Confidence 45677777788899999999999999999987 5789999999 9999999999998888889999999 986521
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC--CCCCCCCCCchhhhh--hhccCCCCCCCHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP--DQCYDEHSLGPGFIK--EYIFPSGCLPSLRR 328 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~--~~~~~~~~~~~~~i~--~yi~pgg~lp~~~~ 328 (381)
+ ..||+|++..+++|+++.....+++++.++|||||++++... ............+.. ....+++...+..+
T Consensus 246 ---~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (374)
T 1qzz_A 246 ---P-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDE 321 (374)
T ss_dssp ---S-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHH
T ss_pred ---C-CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHH
Confidence 2 349999999999999876667999999999999999887654 211000000011111 11235677788888
Q ss_pred HHHHHHhcCCcEEEEEEecch
Q 047022 329 VTSAMTSSSRLCVEHLENIET 349 (381)
Q Consensus 329 ~~~~l~~~~Gf~v~~~~~~~~ 349 (381)
+.+.+. ++||+++.+...+.
T Consensus 322 ~~~ll~-~aGf~~~~~~~~~~ 341 (374)
T 1qzz_A 322 VVDLAG-SAGLALASERTSGS 341 (374)
T ss_dssp HHHHHH-TTTEEEEEEEEECC
T ss_pred HHHHHH-HCCCceEEEEECCC
Confidence 865555 59999988876643
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-17 Score=143.20 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=112.9
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.++..+ +++ +|||||||+|.++..+++. +.+|+++|+|+.+++.++++....+. ++++..+ |+.+++
T Consensus 23 ~~~~~~--~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~-d~~~~~------ 89 (202)
T 2kw5_A 23 SVANQI--PQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQS-NLADFD------ 89 (202)
T ss_dssp HHHHHS--CSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECC-BTTTBS------
T ss_pred HHHHhC--CCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEc-ChhhcC------
Confidence 344444 466 9999999999999999986 88999999999999999999887765 6999999 998876
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHH
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMT 334 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~ 334 (381)
++.++||+|++. +.|++..+...+++++.++|||||.++++.+......+..... .......+..++.+. .
T Consensus 90 ~~~~~fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~-l 160 (202)
T 2kw5_A 90 IVADAWEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGP------KDLDLLPKLETLQSE-L 160 (202)
T ss_dssp CCTTTCSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCS------SSGGGCCCHHHHHHH-C
T ss_pred CCcCCccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCC------CcceeecCHHHHHHH-h
Confidence 456899999995 3456556789999999999999999988876543221110000 001235677777544 4
Q ss_pred hcCCcEEEEEEecc
Q 047022 335 SSSRLCVEHLENIE 348 (381)
Q Consensus 335 ~~~Gf~v~~~~~~~ 348 (381)
+ ||+++..+...
T Consensus 161 ~--Gf~v~~~~~~~ 172 (202)
T 2kw5_A 161 P--SLNWLIANNLE 172 (202)
T ss_dssp S--SSCEEEEEEEE
T ss_pred c--CceEEEEEEEE
Confidence 3 99998877654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-17 Score=152.44 Aligned_cols=166 Identities=15% Similarity=0.050 Sum_probs=108.7
Q ss_pred HHHHHHHcCC--CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-----------------CCC
Q 047022 173 VSVLIEKVKL--VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-----------------GLQ 233 (381)
Q Consensus 173 ~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-----------------gl~ 233 (381)
+..+.+.+.. .++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|++++... +..
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 137 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence 3444444422 367899999999999555444445779999999999999998865321 100
Q ss_pred C------------CeEEEEecCccc-cCcCCccccCCCcccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEc
Q 047022 234 D------------TSDYIFVITVNC-LKPTNMTELFLGNFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 234 ~------------~i~~~~~~d~~~-l~~~~l~~~~~~~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
. .+++..+ |+.+ ++... ..++.++||+|+++.+++|+.. .++..+++++.++|||||++++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~-~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 138 ECWQDKERQLRARVKRVLPI-DVHQPQPLGA-GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp CCHHHHHHHHHHHEEEEECC-CTTSSSTTCS-SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhhHHHHHhhhceEEec-ccCCCCCccc-cccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 0 1567777 8876 33100 0123467999999999999653 378999999999999999988763
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 299 PDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 299 ~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
.... .+... ....++ ....+..++.+.+. ++||+++.++.+.
T Consensus 216 ~~~~--~~~~~----~~~~~~-~~~~~~~~l~~~l~-~aGf~~~~~~~~~ 257 (289)
T 2g72_A 216 ALEE--SWYLA----GEARLT-VVPVSEEEVREALV-RSGYKVRDLRTYI 257 (289)
T ss_dssp EESC--CEEEE----TTEEEE-CCCCCHHHHHHHHH-HTTEEEEEEEEEE
T ss_pred ecCc--ceEEc----CCeeee-eccCCHHHHHHHHH-HcCCeEEEeeEee
Confidence 2110 00000 000011 23456777766555 5899999887765
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=144.76 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=108.4
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH----------c------CCCCCeEEEEecCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE----------A------GLQDTSDYIFVITVN 245 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~----------~------gl~~~i~~~~~~d~~ 245 (381)
..++.+|||+|||+|..+..+++. |.+|+|+|+|+.+++.|+++... . ....++++.++ |+.
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-D~~ 143 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCC-SIF 143 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES-CTT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEEC-ccc
Confidence 457889999999999999999996 89999999999999999876531 0 01247999999 999
Q ss_pred ccCcCCccccC-CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE-EEcCCCCCCCCCCchhhhhhhccCCCCC
Q 047022 246 CLKPTNMTELF-LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC-STVPDQCYDEHSLGPGFIKEYIFPSGCL 323 (381)
Q Consensus 246 ~l~~~~l~~~~-~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~-i~~~~~~~~~~~~~~~~i~~yi~pgg~l 323 (381)
+++ +. .++||+|++..+++|++.++...+++++.++|||||+++ ++..... ... . .|. ..
T Consensus 144 ~l~------~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~-~~~-~---------g~~-~~ 205 (252)
T 2gb4_A 144 DLP------RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDP-TKH-A---------GPP-FY 205 (252)
T ss_dssp TGG------GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCT-TSC-C---------CSS-CC
T ss_pred cCC------cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCC-ccC-C---------CCC-CC
Confidence 887 22 278999999999999987788899999999999999975 4433211 000 0 011 12
Q ss_pred CCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 324 PSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 324 p~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
.+.+++.+.+. . +|+++..+...
T Consensus 206 ~~~~el~~~l~-~-~f~v~~~~~~~ 228 (252)
T 2gb4_A 206 VPSAELKRLFG-T-KCSMQCLEEVD 228 (252)
T ss_dssp CCHHHHHHHHT-T-TEEEEEEEEEE
T ss_pred CCHHHHHHHhh-C-CeEEEEEeccc
Confidence 45677755543 3 69988776543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-17 Score=153.18 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=120.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC------CCCCeEEEEecCccccCcCCcccc-
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG------LQDTSDYIFVITVNCLKPTNMTEL- 255 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~g------l~~~i~~~~~~d~~~l~~~~l~~~- 255 (381)
.++.+|||+|||+|.++..+++..+.+++++|+|+.+++.|+++....+ ...++++..+ |+.+++... .+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~--~~~ 109 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA-DSSKELLID--KFR 109 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC-CTTTSCSTT--TCS
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe-cccccchhh--hcc
Confidence 3778999999999999999987667799999999999999999887542 2237899999 998764100 02
Q ss_pred -CCCcccEEEEchhhHhh--ChhcHHHHHHHHHhccccCceEEEEcCCCCC----------------------CCCCCch
Q 047022 256 -FLGNFSTVFICGMIEAV--GHDYMEELFSCCESLLAENGLSCSTVPDQCY----------------------DEHSLGP 310 (381)
Q Consensus 256 -~~~~fD~Ivs~~~l~~~--~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~----------------------~~~~~~~ 310 (381)
..++||+|++..+++|+ ...+...+++++.++|||||.+++++++... .......
T Consensus 110 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 189 (313)
T 3bgv_A 110 DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYP 189 (313)
T ss_dssp STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCC
T ss_pred cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCC
Confidence 23589999999999987 3346789999999999999999988775310 0000011
Q ss_pred hhhhhhcc---CC----CCCCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHHH
Q 047022 311 GFIKEYIF---PS----GCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWR 359 (381)
Q Consensus 311 ~~i~~yi~---pg----g~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~ 359 (381)
.+..+|-| +. ....+..++ ..+.++.||+++...++...++.....|+
T Consensus 190 ~~~~~~~f~l~~~~~~~~~~~~~~~~-~~l~~~~G~~~v~~~~f~~~g~~~~~~~r 244 (313)
T 3bgv_A 190 LFGCKYDFNLEGVVDVPEFLVYFPLL-NEMAKKYNMKLVYKKTFLEFYEEKIKNNE 244 (313)
T ss_dssp SSCCEEEEEEC---CCEEECCCHHHH-HHHGGGGTEEEEEEEEHHHHHHHHTTSHH
T ss_pred CccceEEEEECCcccCcceEEcHHHH-HHHHHHcCcEEEEecCHHHHHHHhccchh
Confidence 11122211 11 112445566 44555699999999998887776665443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=142.78 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=96.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+.+.+...++.+|||||||+|.++..+++. +. +++++|+|+.+++.++++... .++++..+ |+.+++
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~-d~~~~~----- 102 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERA-DLDKLH----- 102 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEEC-CGGGCC-----
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEc-Chhhcc-----
Confidence 4556666678899999999999999999986 66 999999999999999887532 36999999 998876
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++.++||+|++..+++|++ ++..+++++.++|||||+++++.++
T Consensus 103 -~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 103 -LPQDSFDLAYSSLALHYVE--DVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp -CCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -CCCCCceEEEEeccccccc--hHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 4568999999999999994 6899999999999999999887754
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-16 Score=139.90 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
....+.+.+.+ .++.+|||+|||+|.++..+++. +.+++++|+|+.+++.|+++....+ .++++..+ |+.+++
T Consensus 26 ~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~-d~~~~~- 98 (227)
T 1ve3_A 26 ETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVG-DARKLS- 98 (227)
T ss_dssp HHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEEC-CTTSCC-
T ss_pred HHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEC-chhcCC-
Confidence 33344444444 35789999999999999999986 6699999999999999999988766 57999999 998876
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++.++||+|++..++++....+...+++++.++|||||.+++..++
T Consensus 99 -----~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 99 -----FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp -----SCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----CCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4557899999999955554467889999999999999998887665
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-17 Score=148.22 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=89.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ++++..+ |+.+++ ..++||+
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~-d~~~~~-------~~~~fD~ 113 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP------DAVLHHG-DMRDFS-------LGRRFSA 113 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT------TSEEEEC-CTTTCC-------CSCCEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCEEEEC-ChHHCC-------ccCCcCE
Confidence 46789999999999999999986 7899999999999999998742 6999999 999887 2589999
Q ss_pred EEEch-hhHhhCh-hcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICG-MIEAVGH-DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~-~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|++.. +++|++. ++...+++++.++|||||.++++.
T Consensus 114 v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 114 VTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp EEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred EEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99998 9999954 467899999999999999999864
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.4e-17 Score=151.78 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=87.8
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----CeEEEEecCc------cccCcCCc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD-----TSDYIFVITV------NCLKPTNM 252 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~-----~i~~~~~~d~------~~l~~~~l 252 (381)
++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++....+... ++++.+. |. .+++.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~-d~~~d~~~~~l~~--- 123 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQE-TIRSDTFVSSVRE--- 123 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEEC-CTTSSSHHHHHHT---
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhh-hcccchhhhhhhc---
Confidence 578999999999987766666545799999999999999999987765421 2667787 77 22210
Q ss_pred cccCCCcccEEEEchhhHhh-ChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 253 TELFLGNFSTVFICGMIEAV-GHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.++.++||+|+|..+++|+ ..++...+++++.++|||||++++++++
T Consensus 124 -~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 124 -VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp -TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 1245799999999999875 3345689999999999999999998876
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-18 Score=168.36 Aligned_cols=181 Identities=18% Similarity=0.143 Sum_probs=136.9
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+.+++.+...++.+|||||||+|.+++.+++....+|+++|+|+ +++.|++++..+++.+++++..+ |+.+++
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~-d~~~~~---- 220 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPG-KVEEVS---- 220 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEES-CTTTCC----
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEEC-chhhCc----
Confidence 445666666668899999999999999999986456999999998 99999999999999889999999 998875
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC---------CchhhhhhhccCCCCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS---------LGPGFIKEYIFPSGCL 323 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~---------~~~~~i~~yi~pgg~l 323 (381)
..++||+|++..+++|+..+.....+..+.++|||||.+++........... ...++....++||+.+
T Consensus 221 ---~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~e~~~~~~~w~~~~~~g~dl 297 (480)
T 3b3j_A 221 ---LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDL 297 (480)
T ss_dssp ---CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHHHHHSSCBTTBCC
T ss_pred ---cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEeceeeeeccCchHHHHHHhhccCccccccCCCcCh
Confidence 2368999999999898876667788889999999999987543221100000 0123334458999999
Q ss_pred CCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHHHHHHHH
Q 047022 324 PSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFRE 364 (381)
Q Consensus 324 p~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f~~ 364 (381)
+++.++... +..+..+++.++++.+|++|+..|.+....
T Consensus 298 ~~l~~~~~~--~~f~~pvvd~~~~~~~y~~tl~~~~d~~~~ 336 (480)
T 3b3j_A 298 SALRGAAVD--EYFRQPVVDTFDIRILMAKSVKYTVNFLEA 336 (480)
T ss_dssp GGGHHHHHH--HHTTSCEECCCCSTTBCSCCEEEEEETTTC
T ss_pred hhhhhHHHH--hccCCcEEEEeecccccchhhhhhhhhhcC
Confidence 998776422 212346788888999999888766655443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=150.18 Aligned_cols=162 Identities=11% Similarity=0.086 Sum_probs=124.8
Q ss_pred HHHHHcCCCC-CCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVK-GQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~-~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+++.+...+ +.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++++...++.+++++..+ |+.+.++
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~--- 243 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEK-NLLDARN--- 243 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEEC-CTTCGGG---
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeC-CcccCcc---
Confidence 5677777667 889999999999999999987 5789999999 8899999999998888888999999 9887641
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCc----hhhhhhhccCCCCCCCHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLG----PGFIKEYIFPSGCLPSLRR 328 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~----~~~i~~yi~pgg~lp~~~~ 328 (381)
+..++||+|++..+++|+++++...+++++.++|||||++++............. .++......+++...+..+
T Consensus 244 --~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 321 (352)
T 3mcz_A 244 --FEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPW 321 (352)
T ss_dssp --GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHH
T ss_pred --cCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHH
Confidence 1236799999999999998877899999999999999998775432221111110 1111111246777888888
Q ss_pred HHHHHHhcCCcEEEEE
Q 047022 329 VTSAMTSSSRLCVEHL 344 (381)
Q Consensus 329 ~~~~l~~~~Gf~v~~~ 344 (381)
+.+.+. ++||++++.
T Consensus 322 ~~~ll~-~aGf~~~~~ 336 (352)
T 3mcz_A 322 IAGVVR-DAGLAVGER 336 (352)
T ss_dssp HHHHHH-HTTCEEEEE
T ss_pred HHHHHH-HCCCceeee
Confidence 855554 599999874
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-17 Score=150.99 Aligned_cols=108 Identities=11% Similarity=0.131 Sum_probs=90.5
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
++.+.+... .+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++ .++++.++ |+++++
T Consensus 30 ~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~-~~e~~~---- 94 (257)
T 4hg2_A 30 FRWLGEVAP--ARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH-------PRVTYAVA-PAEDTG---- 94 (257)
T ss_dssp HHHHHHHSS--CSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC-------TTEEEEEC-CTTCCC----
T ss_pred HHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc-------CCceeehh-hhhhhc----
Confidence 344444443 4579999999999999999985 88999999999999887642 47999999 999988
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+++++||+|++..+++|+. ++.+++++.|+|||||++++....
T Consensus 95 --~~~~sfD~v~~~~~~h~~~---~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 95 --LPPASVDVAIAAQAMHWFD---LDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp --CCSSCEEEEEECSCCTTCC---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --ccCCcccEEEEeeehhHhh---HHHHHHHHHHHcCCCCEEEEEECC
Confidence 6779999999999998873 688999999999999997776543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-16 Score=149.90 Aligned_cols=164 Identities=16% Similarity=0.148 Sum_probs=125.6
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+++.+.+.++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|++++...++.+++++..+ |+.+..
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~---- 246 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEG-DFFEPL---- 246 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEEC-CTTSCC----
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeC-CCCCCC----
Confidence 45677777788899999999999999999987 5689999999 9999999999998888889999999 987522
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC-CCCCCCCCchhhhhhh--ccCCCCCCCHHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD-QCYDEHSLGPGFIKEY--IFPSGCLPSLRRV 329 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~-~~~~~~~~~~~~i~~y--i~pgg~lp~~~~~ 329 (381)
+ ..||+|++..+++|+++.+...+++++.++|||||++++.... ...........+...+ ..+++...+..++
T Consensus 247 ---~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 322 (360)
T 1tw3_A 247 ---P-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKW 322 (360)
T ss_dssp ---S-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHH
T ss_pred ---C-CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHH
Confidence 2 3599999999999998766679999999999999998876543 1111100111111111 2346677888888
Q ss_pred HHHHHhcCCcEEEEEEecc
Q 047022 330 TSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 330 ~~~l~~~~Gf~v~~~~~~~ 348 (381)
.+.+. ++||+++++...+
T Consensus 323 ~~ll~-~aGf~~~~~~~~~ 340 (360)
T 1tw3_A 323 DGLAA-SAGLVVEEVRQLP 340 (360)
T ss_dssp HHHHH-HTTEEEEEEEEEE
T ss_pred HHHHH-HCCCeEEEEEeCC
Confidence 65555 5899998877654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-16 Score=145.36 Aligned_cols=110 Identities=13% Similarity=0.230 Sum_probs=97.6
Q ss_pred HHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 178 EKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++++..+ |+.+.+ ..
T Consensus 114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~-d~~~~~-------~~ 182 (286)
T 3m70_A 114 DAAKIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTALY-DINAAN-------IQ 182 (286)
T ss_dssp HHHHHSCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEEC-CGGGCC-------CC
T ss_pred HHhhccCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEe-cccccc-------cc
Confidence 3333347889999999999999999996 88999999999999999999998876 7999999 998877 25
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++||+|++..+++|+++.....+++++.++|||||.+++..
T Consensus 183 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 183 ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp SCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 88999999999999988888999999999999999966654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-16 Score=141.27 Aligned_cols=114 Identities=24% Similarity=0.366 Sum_probs=96.4
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+.+.+.+ +++.+|||+|||+|.++..+++. .+++++|+|+.+++.|+++....+ .++++..+ |+.+++
T Consensus 24 ~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~-d~~~~~---- 92 (243)
T 3d2l_A 24 VAWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQ-DMRELE---- 92 (243)
T ss_dssp HHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEEC-CGGGCC----
T ss_pred HHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEc-ChhhcC----
Confidence 34555554 46789999999999999999885 899999999999999999988765 46999999 998876
Q ss_pred cccCCCcccEEEEch-hhHhh-ChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 253 TELFLGNFSTVFICG-MIEAV-GHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~-~l~~~-~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|++.. +++|+ ...+...+++++.++|||||.+++++++
T Consensus 93 ---~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 93 ---LPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp ---CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---CCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 237899999986 99998 4456889999999999999998887654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=147.65 Aligned_cols=165 Identities=13% Similarity=0.098 Sum_probs=125.2
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
....+++.+...++.+|||||||+|.++..++++ ++.+++++|+ +.+++.+++++...++.+++++..+ |+.+.+
T Consensus 178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~-- 253 (359)
T 1x19_A 178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAV-DIYKES-- 253 (359)
T ss_dssp HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEEC-CTTTSC--
T ss_pred hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeC-ccccCC--
Confidence 3456778888888899999999999999999987 5789999999 9999999999999888878999999 998765
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhc--cCCCCC----C
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYI--FPSGCL----P 324 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi--~pgg~l----p 324 (381)
+ ..+|+|++..+++|+++++...+++++.++|||||++++...............+. .+. ..++.. .
T Consensus 254 ----~--~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~ 326 (359)
T 1x19_A 254 ----Y--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLS-HYILGAGMPFSVLGFK 326 (359)
T ss_dssp ----C--CCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHH-HHGGGGGSSCCCCCCC
T ss_pred ----C--CCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHH-HHHHhcCCCCcccCCC
Confidence 2 23499999999999987778999999999999999987654332111111111111 111 222333 6
Q ss_pred CHHHHHHHHHhcCCcEEEEEEecc
Q 047022 325 SLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
+..++.+.+. ++||+++++..+.
T Consensus 327 t~~e~~~ll~-~aGf~~v~~~~~~ 349 (359)
T 1x19_A 327 EQARYKEILE-SLGYKDVTMVRKY 349 (359)
T ss_dssp CGGGHHHHHH-HHTCEEEEEEEET
T ss_pred CHHHHHHHHH-HCCCceEEEEecC
Confidence 7777755555 5899998877654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-17 Score=150.12 Aligned_cols=115 Identities=15% Similarity=0.029 Sum_probs=89.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc--CcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL--KPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l--~~~~ 251 (381)
..+...+ ..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+ .++++..+ |+.++ +
T Consensus 51 ~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~-d~~~~~~~--- 123 (236)
T 1zx0_A 51 HALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKG-LWEDVAPT--- 123 (236)
T ss_dssp HHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEES-CHHHHGGG---
T ss_pred HHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEec-CHHHhhcc---
Confidence 3334433 46788999999999999999977534489999999999999999887655 47999999 99887 4
Q ss_pred ccccCCCcccEEEE-chhh--HhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 252 MTELFLGNFSTVFI-CGMI--EAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~~fD~Ivs-~~~l--~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+.+++||+|++ ...+ ......+...+++++.++|||||++++..
T Consensus 124 ---~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 124 ---LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp ---SCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ---cCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 56689999999 4432 22222345688999999999999987653
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=137.79 Aligned_cols=143 Identities=14% Similarity=0.092 Sum_probs=110.2
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.+.+.++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++ .+++++..+ | .+
T Consensus 8 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~v~~~~~-d---~~------ 70 (170)
T 3i9f_A 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK------FDSVITLSD-P---KE------ 70 (170)
T ss_dssp TTHHHHHSSCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH------CTTSEEESS-G---GG------
T ss_pred HHHHhcCcCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh------CCCcEEEeC-C---CC------
Confidence 45556667788999999999999999999874 4999999999999999988 247999998 8 33
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHH
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMT 334 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~ 334 (381)
+..++||+|++..+++|+ .++..+++++.++|||||++++............ |.....+..++.+ +.
T Consensus 71 ~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~l 137 (170)
T 3i9f_A 71 IPDNSVDFILFANSFHDM--DDKQHVISEVKRILKDDGRVIIIDWRKENTGIGP----------PLSIRMDEKDYMG-WF 137 (170)
T ss_dssp SCTTCEEEEEEESCSTTC--SCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS----------CGGGCCCHHHHHH-HT
T ss_pred CCCCceEEEEEccchhcc--cCHHHHHHHHHHhcCCCCEEEEEEcCccccccCc----------hHhhhcCHHHHHH-HH
Confidence 345899999999999999 4689999999999999999888765433211111 1112246667644 44
Q ss_pred hcCCcEEEEEEecch
Q 047022 335 SSSRLCVEHLENIET 349 (381)
Q Consensus 335 ~~~Gf~v~~~~~~~~ 349 (381)
+ ||++++...+..
T Consensus 138 ~--Gf~~~~~~~~~~ 150 (170)
T 3i9f_A 138 S--NFVVEKRFNPTP 150 (170)
T ss_dssp T--TEEEEEEECSST
T ss_pred h--CcEEEEccCCCC
Confidence 3 999998877653
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=142.80 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=97.7
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+...+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... .++++..+ |+.+++
T Consensus 42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~-d~~~~~------ 110 (216)
T 3ofk_A 42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW---SHISWAAT-DILQFS------ 110 (216)
T ss_dssp HHHHHTTTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC---SSEEEEEC-CTTTCC------
T ss_pred HHHHHcccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC---CCeEEEEc-chhhCC------
Confidence 3444566677889999999999999999986 679999999999999999987653 37999999 998887
Q ss_pred cCCCcccEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 255 LFLGNFSTVFICGMIEAVGH-DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|++..+++|+++ +....+++++.++|||||.++++++.
T Consensus 111 -~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 111 -TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp -CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 4589999999999999974 34568899999999999999987754
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-17 Score=149.48 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=107.7
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCC---------------------------
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGL--------------------------- 232 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl--------------------------- 232 (381)
...++.+|||||||+|.++..++.. ++ +|+|+|+|+.|++.|++++.....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 4567889999999999887776664 54 699999999999999987654310
Q ss_pred -CCCeE-EEEecCccccCcCCccccCCCcccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC
Q 047022 233 -QDTSD-YIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL 308 (381)
Q Consensus 233 -~~~i~-~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~ 308 (381)
..++. +..+ |+.+..+. .....++||+|+++.+++|+.. +++..+++++.++|||||.++++...... .+.
T Consensus 131 ~~~~i~~~~~~-D~~~~~~~--~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~-~~~- 205 (263)
T 2a14_A 131 LRAAVKRVLKC-DVHLGNPL--APAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP-SYM- 205 (263)
T ss_dssp HHHHEEEEEEC-CTTSSSTT--TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-EEE-
T ss_pred HHhhhheEEec-cccCCCCC--CccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCc-cce-
Confidence 01243 8888 98874210 0012468999999999999742 46788999999999999998887532110 000
Q ss_pred chhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 309 GPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 309 ~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
.....++. ...+.+++.+.+. ++||++++++...
T Consensus 206 ----~g~~~~~~-~~~~~~~l~~~l~-~aGF~i~~~~~~~ 239 (263)
T 2a14_A 206 ----VGKREFSC-VALEKGEVEQAVL-DAGFDIEQLLHSP 239 (263)
T ss_dssp ----ETTEEEEC-CCCCHHHHHHHHH-HTTEEEEEEEEEC
T ss_pred ----eCCeEeec-cccCHHHHHHHHH-HCCCEEEEEeecc
Confidence 00111211 2336777766665 4899999887764
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-16 Score=151.32 Aligned_cols=153 Identities=11% Similarity=0.070 Sum_probs=116.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc--CcCCccccCCCc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL--KPTNMTELFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l--~~~~l~~~~~~~ 259 (381)
.+..+|||||||+|.++..++++ ++.+++++|+ +.+++.|++++...++.+++++..+ |+.+. + ++ ++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~------~p-~~ 248 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGA-NLLDRDVP------FP-TG 248 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEEC-CCCSSSCC------CC-CC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEc-cccccCCC------CC-CC
Confidence 45679999999999999999987 6789999999 9999999999988888779999999 99874 2 12 78
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCc---hhhhhhh----ccCCCCCCCHHHHHHH
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLG---PGFIKEY----IFPSGCLPSLRRVTSA 332 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~---~~~i~~y----i~pgg~lp~~~~~~~~ 332 (381)
||+|++..+++++++++...+++++.++|||||++++............. ......+ ...++...+..++.+.
T Consensus 249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 328 (363)
T 3dp7_A 249 FDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRC 328 (363)
T ss_dssp CSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHH
T ss_pred cCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHH
Confidence 99999999999998877889999999999999998876543221111100 0011111 1234556788888555
Q ss_pred HHhcCCcEEEEEE
Q 047022 333 MTSSSRLCVEHLE 345 (381)
Q Consensus 333 l~~~~Gf~v~~~~ 345 (381)
+ +++||+++++.
T Consensus 329 l-~~AGf~~v~~~ 340 (363)
T 3dp7_A 329 I-ENAGLEVEEIQ 340 (363)
T ss_dssp H-HTTTEEESCCC
T ss_pred H-HHcCCeEEEEE
Confidence 5 46899987654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=133.77 Aligned_cols=135 Identities=16% Similarity=0.242 Sum_probs=109.6
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
++..+ ++++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++. .++++..+ |+.+++ +
T Consensus 39 ~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~-d~~~~~------~ 103 (195)
T 3cgg_A 39 LIDAM-APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF------PEARWVVG-DLSVDQ------I 103 (195)
T ss_dssp HHHHH-SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTSEEEEC-CTTTSC------C
T ss_pred HHHHh-ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC------CCCcEEEc-ccccCC------C
Confidence 44444 468889999999999999999986 889999999999999998875 25899999 998876 3
Q ss_pred CCCcccEEEEc-hhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHH
Q 047022 256 FLGNFSTVFIC-GMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMT 334 (381)
Q Consensus 256 ~~~~fD~Ivs~-~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~ 334 (381)
+.++||+|++. .+++|++.++...+++++.++|+|||.++++.+.... .+..++.+.+.
T Consensus 104 ~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~--------------------~~~~~~~~~l~ 163 (195)
T 3cgg_A 104 SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRG--------------------WVFGDFLEVAE 163 (195)
T ss_dssp CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSS--------------------CCHHHHHHHHH
T ss_pred CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCC--------------------cCHHHHHHHHH
Confidence 45789999998 7899987777899999999999999999887654321 34566655555
Q ss_pred hcCCcEEEEEEe
Q 047022 335 SSSRLCVEHLEN 346 (381)
Q Consensus 335 ~~~Gf~v~~~~~ 346 (381)
++||.++....
T Consensus 164 -~~Gf~~~~~~~ 174 (195)
T 3cgg_A 164 -RVGLELENAFE 174 (195)
T ss_dssp -HHTEEEEEEES
T ss_pred -HcCCEEeeeec
Confidence 48999887653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-16 Score=138.13 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=114.5
Q ss_pred cccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHH
Q 047022 139 NELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSEL 218 (381)
Q Consensus 139 ~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~ 218 (381)
.+. ...++++.+.|.++.. ......+..+... ++++.+|||+|||+|.++..+++....+|+++|+|+.
T Consensus 26 ~~~-~~~~~~~~~~f~~~~~--------~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~ 94 (205)
T 3grz_A 26 KDQ-EIIRLDPGLAFGTGNH--------QTTQLAMLGIERA--MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDE 94 (205)
T ss_dssp TTC-EEEEESCC-----CCH--------HHHHHHHHHHHHH--CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHH
T ss_pred CCc-eeEEecCCcccCCCCC--------ccHHHHHHHHHHh--ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHH
Confidence 344 5566777776655432 1222222232222 4578899999999999999998864459999999999
Q ss_pred HHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 219 QLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 219 ~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+++.|++++...++.+ +++..+ |+.+.. .++||+|++...++++ ..+++++.++|||||+++++.
T Consensus 95 ~~~~a~~~~~~~~~~~-v~~~~~-d~~~~~--------~~~fD~i~~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 95 SMTAAEENAALNGIYD-IALQKT-SLLADV--------DGKFDLIVANILAEIL-----LDLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp HHHHHHHHHHHTTCCC-CEEEES-STTTTC--------CSCEEEEEEESCHHHH-----HHHGGGSGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCc-eEEEec-cccccC--------CCCceEEEECCcHHHH-----HHHHHHHHHhcCCCCEEEEEe
Confidence 9999999999888864 999999 987644 3789999999887765 788999999999999988864
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 299 PDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 299 ~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
.... ...++.+.+. ++||+++.....+
T Consensus 160 ~~~~----------------------~~~~~~~~~~-~~Gf~~~~~~~~~ 186 (205)
T 3grz_A 160 IDYL----------------------QLPKIEQALA-ENSFQIDLKMRAG 186 (205)
T ss_dssp EEGG----------------------GHHHHHHHHH-HTTEEEEEEEEET
T ss_pred cCcc----------------------cHHHHHHHHH-HcCCceEEeeccC
Confidence 2211 2344444444 5899988776543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=139.86 Aligned_cols=120 Identities=24% Similarity=0.350 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...+..++..+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....++ ++++..+ |+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~-d~~~~~- 101 (252)
T 1wzn_A 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQG-DVLEIA- 101 (252)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEES-CGGGCC-
T ss_pred HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEC-Chhhcc-
Confidence 345566777776677889999999999999999986 88999999999999999999887765 6999999 998876
Q ss_pred CCccccCCCcccEEEEch-hhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 250 TNMTELFLGNFSTVFICG-MIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~-~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|++.. .+.+.+.++...+++++.++|||||.+++..++
T Consensus 102 ------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 102 ------FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp ------CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ------cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 237899999874 556666567899999999999999999887765
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-16 Score=146.40 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=101.3
Q ss_pred CCCCEEEEecCCchHHHHHHH----Hh-cCCEE--EEEcCCHHHHHHHHHHHHHc-CCCCCeEEE--EecCccccCcCCc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIV----RQ-TGCKY--TGITLSELQLKYAEIKVKEA-GLQDTSDYI--FVITVNCLKPTNM 252 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la----~~-~~~~v--~gvDis~~~~~~a~~~~~~~-gl~~~i~~~--~~~d~~~l~~~~l 252 (381)
.++.+|||||||+|.++..++ .+ +++.+ +++|+|++|++.|++++... ++ .++++. .. +..+++..-.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~-~~~~~~~~~~ 128 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKE-TSSEYQSRML 128 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECS-CHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEec-chhhhhhhhc
Confidence 567899999999998765433 22 35644 99999999999999998754 33 356554 44 4433320000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhc--cC---CCCCCCHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYI--FP---SGCLPSLR 327 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi--~p---gg~lp~~~ 327 (381)
..+.+++||+|++..+++|+ .++..++++++++|||||++++....... ....+...+. .+ ....++..
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSS----GWDKLWKKYGSRFPQDDLCQYITSD 202 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEECTTS----HHHHHHHHHGGGSCCCTTCCCCCHH
T ss_pred cccCCCceeEEEEeeeeeec--CCHHHHHHHHHHHcCCCcEEEEEEecCCc----cHHHHHHHHHHhccCCCcccCCCHH
Confidence 00235889999999999999 56899999999999999998877544221 0111222221 12 12356677
Q ss_pred HHHHHHHhcCCcEEEEE
Q 047022 328 RVTSAMTSSSRLCVEHL 344 (381)
Q Consensus 328 ~~~~~l~~~~Gf~v~~~ 344 (381)
++.+.+. ++||+++..
T Consensus 203 ~~~~~l~-~aGf~~~~~ 218 (292)
T 2aot_A 203 DLTQMLD-NLGLKYECY 218 (292)
T ss_dssp HHHHHHH-HHTCCEEEE
T ss_pred HHHHHHH-HCCCceEEE
Confidence 7755554 589988764
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=146.28 Aligned_cols=164 Identities=12% Similarity=0.114 Sum_probs=123.7
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
...+++.+...+ .+|||+|||+|..+..++++ ++.+++++|+ +.+++.+++++...++.+++++..+ |+.+ +
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~--- 229 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGG-DMLQ-E--- 229 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEES-CTTT-C---
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecC-CCCC-C---
Confidence 456677777777 89999999999999999987 5789999999 9999999999887777778999999 9876 3
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhh--hhccCCCCCCCHHHH
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIK--EYIFPSGCLPSLRRV 329 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~--~yi~pgg~lp~~~~~ 329 (381)
++ ++||+|++..+++|+++++...+++++.++|||||++++...............+.. .....++...+..++
T Consensus 230 ---~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 305 (334)
T 2ip2_A 230 ---VP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEV 305 (334)
T ss_dssp ---CC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHH
T ss_pred ---CC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHH
Confidence 12 679999999999999877777999999999999999887753321111000011111 111234666788888
Q ss_pred HHHHHhcCCcEEEEEEecc
Q 047022 330 TSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 330 ~~~l~~~~Gf~v~~~~~~~ 348 (381)
.+.+. ++||+++++...+
T Consensus 306 ~~ll~-~aGf~~~~~~~~~ 323 (334)
T 2ip2_A 306 VDLLG-RGGFAVERIVDLP 323 (334)
T ss_dssp HHHHH-HTTEEEEEEEEET
T ss_pred HHHHH-HCCCceeEEEECC
Confidence 65555 5899998876543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-16 Score=137.63 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=92.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..++..+.. ++.+|||+|||+|.++..+ +. +++++|+|+.+++.++++. .++++..+ |..+++
T Consensus 27 ~~~l~~~~~-~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~-d~~~~~---- 90 (211)
T 2gs9_A 27 ERALKGLLP-PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRA-WGEALP---- 90 (211)
T ss_dssp HHHHHTTCC-CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC------TTSEEECC-CTTSCC----
T ss_pred HHHHHHhcC-CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEc-ccccCC----
Confidence 344555543 7889999999999998877 56 9999999999999999875 37899999 998876
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
+++++||+|++..+++|++ ++..+++++.++|||||.++++.++..
T Consensus 91 --~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 91 --FPGESFDVVLLFTTLEFVE--DVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp --SCSSCEEEEEEESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred --CCCCcEEEEEEcChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 4568999999999999994 689999999999999999999887643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-16 Score=133.64 Aligned_cols=111 Identities=13% Similarity=0.100 Sum_probs=90.1
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ +++++... +...++ .+.+++|
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~-~~~~l~-----~~~~~~f 90 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILD-GHENLD-----HYVREPI 90 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEES-CGGGGG-----GTCCSCE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeC-cHHHHH-----hhccCCc
Confidence 4578999999999999999999997 89999999999999999999998888 58999998 887764 1245789
Q ss_pred cEEEEc-hhhHhh------ChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 261 STVFIC-GMIEAV------GHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 261 D~Ivs~-~~l~~~------~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
|+|++. ..+.+. .......+++++.++|||||++++...
T Consensus 91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp EEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999987 333320 113566889999999999999887654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-15 Score=132.70 Aligned_cols=111 Identities=17% Similarity=0.149 Sum_probs=95.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..++..+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++...++.+++++..+ |+.+..+
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~~---- 118 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG-TAPAALA---- 118 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CTTGGGT----
T ss_pred HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeC-chhhhcc----
Confidence 35677888889999999999999999999997 89999999999999999999999998778999999 9987321
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...+||+|++...+ +.. +++++.++|||||++++...
T Consensus 119 --~~~~~D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 119 --DLPLPEAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp --TSCCCSEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred --cCCCCCEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEec
Confidence 23579999987633 346 99999999999999888764
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=147.76 Aligned_cols=115 Identities=15% Similarity=0.275 Sum_probs=91.7
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC------------------------------
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGL------------------------------ 232 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl------------------------------ 232 (381)
++.+|||||||+|.++..+++. .+.+|+|+|+|+.+++.|++++...+.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 6789999999999999999997 467999999999999999998765432
Q ss_pred ---------------------------CCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhh----ChhcHHHHH
Q 047022 233 ---------------------------QDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAV----GHDYMEELF 281 (381)
Q Consensus 233 ---------------------------~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~----~~~~~~~~l 281 (381)
+.+++|..+ |+.....+ +..+..++||+|+|..+++|+ +++++..++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~-d~~~~~~~-~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTG-NYVLDRDD-LVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEEC-CCCCSSHH-HHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEec-ccccCccc-cccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 258999999 98754300 001245899999999999888 555789999
Q ss_pred HHHHhccccCceEEEEcCC
Q 047022 282 SCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 282 ~~~~~~LkpgG~~~i~~~~ 300 (381)
+++.++|||||++++....
T Consensus 204 ~~~~~~LkpGG~lil~~~~ 222 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQP 222 (292)
T ss_dssp HHHHHHEEEEEEEEEECCC
T ss_pred HHHHHHhCCCcEEEEecCC
Confidence 9999999999999887543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-16 Score=136.96 Aligned_cols=109 Identities=25% Similarity=0.271 Sum_probs=93.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.++.+|||+|||+|.++..++...+.+|+|+|+|+.+++.+++++...+ .++++..+ |+.+++ ++.++||+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~-d~~~~~------~~~~~fD~ 92 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKG-DIRKLP------FKDESMSF 92 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEEC-CTTSCC------SCTTCEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEC-chhhCC------CCCCceeE
Confidence 4678999999999998544444468899999999999999999987766 36899999 998876 45689999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|++..+++|++..+...+++++.++|||||.++++...
T Consensus 93 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 93 VYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999997778999999999999999998887654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=145.96 Aligned_cols=160 Identities=8% Similarity=0.090 Sum_probs=117.1
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
...+++.+.++++.+|||||||+|.++..++++ ++.+++++|++ .++. +++....++.+++++..+ |+.+ +
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~-d~~~-~--- 244 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEG-DFLR-E--- 244 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEEC-CTTT-C---
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEec-CCCC-C---
Confidence 456778888888999999999999999999987 57799999994 4444 333333456678999999 9872 2
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhh--hhhccCCCCCCCHHHH
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFI--KEYIFPSGCLPSLRRV 329 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i--~~yi~pgg~lp~~~~~ 329 (381)
.+ +||+|++..+++|+++.+...++++++++|||||++++...............+. .....+++...+..++
T Consensus 245 ---~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~ 319 (348)
T 3lst_A 245 ---VP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAEL 319 (348)
T ss_dssp ---CC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHH
T ss_pred ---CC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHH
Confidence 23 8999999999999987667899999999999999988765432211111111111 1122366777888888
Q ss_pred HHHHHhcCCcEEEEEEe
Q 047022 330 TSAMTSSSRLCVEHLEN 346 (381)
Q Consensus 330 ~~~l~~~~Gf~v~~~~~ 346 (381)
.+.+. ++||+++++..
T Consensus 320 ~~ll~-~aGf~~~~~~~ 335 (348)
T 3lst_A 320 EPLFT-AAGLRLDRVVG 335 (348)
T ss_dssp HHHHH-HTTEEEEEEEE
T ss_pred HHHHH-HCCCceEEEEE
Confidence 55554 59999988765
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=141.06 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=111.0
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCC---------------------------
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGL--------------------------- 232 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl--------------------------- 232 (381)
...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.+++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 4457789999999999999988875 55 999999999999999988754321
Q ss_pred -CCCe-EEEEecCccccCcCCccccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEEEcCCCCCCCCCC
Q 047022 233 -QDTS-DYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCSTVPDQCYDEHSL 308 (381)
Q Consensus 233 -~~~i-~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~ 308 (381)
..++ ++..+ |+.+..+. .....++||+|++..+++|+... ++..+++++.++|||||++++....... .+..
T Consensus 132 l~~~v~~~~~~-d~~~~~~~--~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~ 207 (265)
T 2i62_A 132 LRRAIKQVLKC-DVTQSQPL--GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-YYMI 207 (265)
T ss_dssp HHHHEEEEEEC-CTTSSSTT--TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-EEEE
T ss_pred hhhhheeEEEe-eeccCCCC--CccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-eEEc
Confidence 0127 89999 98876520 00122789999999999966433 6889999999999999998887633210 0000
Q ss_pred chhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecchhH
Q 047022 309 GPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHY 351 (381)
Q Consensus 309 ~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y 351 (381)
. ...++ ....+.+++.+.+. ++||+++.++....+|
T Consensus 208 -~----~~~~~-~~~~~~~~~~~~l~-~aGf~~~~~~~~~~~~ 243 (265)
T 2i62_A 208 -G----EQKFS-SLPLGWETVRDAVE-EAGYTIEQFEVISQNY 243 (265)
T ss_dssp -T----TEEEE-CCCCCHHHHHHHHH-HTTCEEEEEEEECCCC
T ss_pred -C----Ccccc-ccccCHHHHHHHHH-HCCCEEEEEEEecccC
Confidence 0 00001 12345667755555 5899999888765433
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-16 Score=140.88 Aligned_cols=114 Identities=13% Similarity=0.053 Sum_probs=90.2
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||||||+|.++..+++. ++..|+|+|+|+.+++.|++++...++. ++++..+ |+.++.+. .+++++||.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~-Da~~~l~~---~~~~~~~d~ 108 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCH-DAVEVLHK---MIPDNSLRM 108 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECS-CHHHHHHH---HSCTTCEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEEC-CHHHHHHH---HcCCCChhe
Confidence 5679999999999999999987 5789999999999999999999988876 7999999 98874100 035689999
Q ss_pred EEEchhhHhhChhc------HHHHHHHHHhccccCceEEEEcCCCC
Q 047022 263 VFICGMIEAVGHDY------MEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 263 Ivs~~~l~~~~~~~------~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
|++.....+..... ...+++++.++|||||.+++.+....
T Consensus 109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~ 154 (218)
T 3dxy_A 109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP 154 (218)
T ss_dssp EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence 99974332221111 13699999999999999988876543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=130.76 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=95.0
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
...+++.+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++...++.+++ +..+ |..+.-+
T Consensus 14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~-d~~~~~~-- 89 (178)
T 3hm2_A 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQ-GAPRAFD-- 89 (178)
T ss_dssp HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEEC-CTTGGGG--
T ss_pred HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEec-chHhhhh--
Confidence 356778888889999999999999999999987 4789999999999999999999988887788 8888 8744220
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...++||+|++...++| ..+++++.++|||||++++...
T Consensus 90 ---~~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 90 ---DVPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp ---GCCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred ---ccCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 12278999999988776 5688999999999999888764
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-15 Score=133.87 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=88.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .++++..+ |+.+++ ..++||+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~-d~~~~~-------~~~~~D~ 103 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRL------PDATLHQG-DMRDFR-------LGRKFSA 103 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHC------TTCEEEEC-CTTTCC-------CSSCEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhC------CCCEEEEC-CHHHcc-------cCCCCcE
Confidence 57789999999999999999987 559999999999999998874 36899999 998876 2578999
Q ss_pred EEE-chhhHhhCh-hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFI-CGMIEAVGH-DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs-~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+| ..+++|++. ++...+++++.++|||||.++++.+.
T Consensus 104 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 104 VVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred EEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 996 459999854 56789999999999999999987644
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=157.31 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=101.9
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHc------CCCCCeEEEEecCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEA------GLQDTSDYIFVITV 244 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~------gl~~~i~~~~~~d~ 244 (381)
++.+++.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|++++... ++ .++++.++ |+
T Consensus 710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqG-Da 787 (950)
T 3htx_A 710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDG-SI 787 (950)
T ss_dssp HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEES-CT
T ss_pred HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEEC-ch
Confidence 34455555555789999999999999999998632 79999999999999999977643 34 37999999 99
Q ss_pred cccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCC
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCY 303 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~ 303 (381)
.+++ +..++||+|++..+++|+++.....+++++.++|||| .+++++|+..+
T Consensus 788 ~dLp------~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey 839 (950)
T 3htx_A 788 LEFD------SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF 839 (950)
T ss_dssp TSCC------TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred HhCC------cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence 9987 4568999999999999998766678999999999999 88888887543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=139.07 Aligned_cols=142 Identities=20% Similarity=0.198 Sum_probs=107.4
Q ss_pred ccCChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHH
Q 047022 120 RKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLA 199 (381)
Q Consensus 120 ~~~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~ 199 (381)
.+++.....+.++.+||...+. .. | ......+..++..+. .++.+|||||||+|.++
T Consensus 13 ~~~~~~~~~~~~a~~Yd~~~~~-~~-------------~--------~~~~~~~~~~l~~~~-~~~~~vLDiGcG~G~~~ 69 (260)
T 2avn_A 13 MKLRSWEFYDRIARAYDSMYET-PK-------------W--------KLYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWS 69 (260)
T ss_dssp EECCHHHHHHHHHHHHGGGGCS-HH-------------H--------HHHHHHHHHHHHHHC-CSCCEEEEETCTTCHHH
T ss_pred hhhhhcchhhHHHHHHHHhccc-cc-------------h--------hHHHHHHHHHHHHhc-CCCCeEEEeCCCcCHHH
Confidence 3456677778888888753322 00 0 111233334444432 37789999999999999
Q ss_pred HHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHH
Q 047022 200 IEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEE 279 (381)
Q Consensus 200 ~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~ 279 (381)
..+++. +.+++|+|+|+.+++.++++.. . .+..+ |+.+++ +++++||+|++..+++|+.. ++..
T Consensus 70 ~~l~~~-~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~-d~~~~~------~~~~~fD~v~~~~~~~~~~~-~~~~ 133 (260)
T 2avn_A 70 LFLQER-GFEVVLVDPSKEMLEVAREKGV-----K--NVVEA-KAEDLP------FPSGAFEAVLALGDVLSYVE-NKDK 133 (260)
T ss_dssp HHHHTT-TCEEEEEESCHHHHHHHHHHTC-----S--CEEEC-CTTSCC------SCTTCEEEEEECSSHHHHCS-CHHH
T ss_pred HHHHHc-CCeEEEEeCCHHHHHHHHhhcC-----C--CEEEC-cHHHCC------CCCCCEEEEEEcchhhhccc-cHHH
Confidence 999986 8899999999999999998743 1 27888 988876 45689999999988888753 4899
Q ss_pred HHHHHHhccccCceEEEEcCC
Q 047022 280 LFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 280 ~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+++++.++|||||.+++++++
T Consensus 134 ~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 134 AFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHcCCCeEEEEEeCC
Confidence 999999999999999988765
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-15 Score=130.79 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=97.5
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..++..+.++++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...++ +++++..+ |+.+..+
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~-d~~~~~~--- 104 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEA-FAPEGLD--- 104 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEEC-CTTTTCT---
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeC-Chhhhhh---
Confidence 46788888899999999999999999999987 348999999999999999999998888 58999999 9865541
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|++...++ +...+++++.++|||||++++..+
T Consensus 105 ---~~~~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 105 ---DLPDPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp ---TSCCCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ---cCCCCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 236799999987654 468999999999999999888753
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=143.15 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=97.2
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeEEEEecCccccCcCC
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ---DTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~---~~i~~~~~~d~~~l~~~~ 251 (381)
.+.+.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+.. .++.+..+ |+.+++.+
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~- 124 (293)
T 3thr_A 48 WLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA-NWLTLDKD- 124 (293)
T ss_dssp HHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC-CGGGHHHH-
T ss_pred HHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeec-ChhhCccc-
Confidence 3444444457889999999999999999996 889999999999999999887543321 36788888 88775410
Q ss_pred ccccCCCcccEEEEc-hhhHhhCh-----hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 MTELFLGNFSTVFIC-GMIEAVGH-----DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~-~~l~~~~~-----~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+ +..++||+|++. .+++|+++ +++..+++++.++|||||+++++.++
T Consensus 125 ~--~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 125 V--PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp S--CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred c--ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 0 245889999998 89999975 55899999999999999999988754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-15 Score=129.68 Aligned_cols=118 Identities=18% Similarity=0.303 Sum_probs=101.2
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD-TSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~-~i~~~~~~d~~~l~~~~ 251 (381)
...+++.+..+++.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...++.. ++++..+ |+.+..
T Consensus 41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~~~--- 115 (194)
T 1dus_A 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS-DLYENV--- 115 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC-STTTTC---
T ss_pred HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC-chhccc---
Confidence 346777888889999999999999999999987 8899999999999999999999888764 4999999 987744
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|++...+++. ..+...+++++.++|+|||.+++..+.
T Consensus 116 ----~~~~~D~v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 116 ----KDRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp ----TTSCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ----ccCCceEEEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 35789999998877652 246789999999999999999888765
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-15 Score=128.10 Aligned_cols=111 Identities=12% Similarity=0.252 Sum_probs=90.7
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+...+ .+..+|||+|||+|.+++.++.. ++++|+++|+|+.|++.+++++...|+..++++ . |.....
T Consensus 42 ~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~-d~~~~~----- 111 (200)
T 3fzg_A 42 YVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--L-NKESDV----- 111 (200)
T ss_dssp HHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--E-CCHHHH-----
T ss_pred HHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--e-cccccC-----
Confidence 444444 45779999999999999999776 678999999999999999999999988766666 6 665443
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+.++||+|++..+++++ ++.+..+.++.+.|+|||. +|+.|.
T Consensus 112 --~~~~~DvVLa~k~LHlL--~~~~~al~~v~~~L~pggv-fISfpt 153 (200)
T 3fzg_A 112 --YKGTYDVVFLLKMLPVL--KQQDVNILDFLQLFHTQNF-VISFPI 153 (200)
T ss_dssp --TTSEEEEEEEETCHHHH--HHTTCCHHHHHHTCEEEEE-EEEEEC
T ss_pred --CCCCcChhhHhhHHHhh--hhhHHHHHHHHHHhCCCCE-EEEeCh
Confidence 45889999999999999 4556667799999999987 456653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=132.85 Aligned_cols=113 Identities=16% Similarity=0.077 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.....+++.+.++++.+|||||||+|.++..+++. +.+|+++|+|+.+++.|++++...++. ++++..+ |..+..
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~-d~~~~~-- 138 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHG-DGWQGW-- 138 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEES-CGGGCC--
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEEC-CcccCC--
Confidence 44557788888899999999999999999999997 889999999999999999999988876 7999999 998765
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
...++||+|++..+++|+++ .+.++|||||++++..++
T Consensus 139 ----~~~~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 139 ----QARAPFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp ----GGGCCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred ----ccCCCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 23478999999999999863 578999999999998876
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=133.56 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=97.2
Q ss_pred HHHHHcCCC-CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLV-KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+...+.++ ++.+|||+|||+|.+++.++++...+|+|+|+++.+++.|++++...++.+++++..+ |+.+...
T Consensus 39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~-D~~~~~~---- 113 (259)
T 3lpm_A 39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEY-DLKKITD---- 113 (259)
T ss_dssp HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECS-CGGGGGG----
T ss_pred HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEEC-cHHHhhh----
Confidence 344556677 8899999999999999999987445999999999999999999999999889999999 9988752
Q ss_pred ccCCCcccEEEEchhhHhh------------------ChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 254 ELFLGNFSTVFICGMIEAV------------------GHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~------------------~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+..++||+|+++-.+.+. ....+..+++.+.++|||||++++..+.
T Consensus 114 ~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 114 LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 1346899999996433221 1124578999999999999998886644
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-15 Score=129.79 Aligned_cols=112 Identities=11% Similarity=0.094 Sum_probs=93.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.++.+|||+|||+|.++..+++....+|+++|+|+.+++.|++++...++ +++++..+ |+.+..+ .+..++||+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~-d~~~~~~----~~~~~~fD~ 116 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRG-AVAAVVA----AGTTSPVDL 116 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEES-CHHHHHH----HCCSSCCSE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEc-cHHHHHh----hccCCCccE
Confidence 57889999999999999988886445899999999999999999999888 58999999 9887641 123578999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHh--ccccCceEEEEcCCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCES--LLAENGLSCSTVPDQ 301 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~--~LkpgG~~~i~~~~~ 301 (381)
|++...+++. .++...+++.+.+ +|+|||.+++..+..
T Consensus 117 i~~~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 117 VLADPPYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp EEECCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred EEECCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 9998776653 2467899999999 999999998877543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.60 E-value=9e-15 Score=132.03 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=91.3
Q ss_pred cCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 180 VKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 180 l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
..++++.+|||+||| +|.++..+++..+.+|+|+|+|+.+++.|++++...++ ++++..+ |+..+. .+.++
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~-d~~~~~-----~~~~~ 122 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKS-NGGIIK-----GVVEG 122 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEEC-SSCSST-----TTCCS
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeC-Cchhhh-----hcccC
Confidence 345789999999999 99999999986578999999999999999999998887 7999999 975543 13458
Q ss_pred cccEEEEchhhHhhCh-----------------hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 259 NFSTVFICGMIEAVGH-----------------DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~-----------------~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+||+|+++..+.+.+. ..+..+++++.++|||||++++..+.
T Consensus 123 ~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp CEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred ceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 8999999855443321 12478999999999999998887643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-15 Score=133.14 Aligned_cols=137 Identities=17% Similarity=0.097 Sum_probs=104.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++.+|||||||+|.++..+++. +++|+|+.+++.++++ ++++..+ |+.+++ +..++||+|
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~-d~~~~~------~~~~~fD~v 106 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKG-TAENLP------LKDESFDFA 106 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEEC-BTTBCC------SCTTCEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEc-ccccCC------CCCCCeeEE
Confidence 3789999999999999888763 9999999999999876 4889999 998876 456789999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhh-----ccCCCCCCCHHHHHHHHHhcCC
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEY-----IFPSGCLPSLRRVTSAMTSSSR 338 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~y-----i~pgg~lp~~~~~~~~l~~~~G 338 (381)
++..+++|+ .++..+++++.++|+|||.++++.++.... ...+.... ........+..++.+.+. ++|
T Consensus 107 ~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~G 179 (219)
T 1vlm_A 107 LMVTTICFV--DDPERALKEAYRILKKGGYLIVGIVDRESF----LGREYEKNKEKSVFYKNARFFSTEELMDLMR-KAG 179 (219)
T ss_dssp EEESCGGGS--SCHHHHHHHHHHHEEEEEEEEEEEECSSSH----HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHH-HTT
T ss_pred EEcchHhhc--cCHHHHHHHHHHHcCCCcEEEEEEeCCccH----HHHHHHHHhcCcchhcccccCCHHHHHHHHH-HCC
Confidence 999999999 467999999999999999999887654311 01111110 111234567788865555 589
Q ss_pred cEEEEEEec
Q 047022 339 LCVEHLENI 347 (381)
Q Consensus 339 f~v~~~~~~ 347 (381)
|+++++...
T Consensus 180 f~~~~~~~~ 188 (219)
T 1vlm_A 180 FEEFKVVQT 188 (219)
T ss_dssp CEEEEEEEE
T ss_pred CeEEEEecc
Confidence 999887654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.4e-16 Score=140.06 Aligned_cols=107 Identities=15% Similarity=0.030 Sum_probs=88.6
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
..+|.+|||||||+|..+.+++++.+.++++||+|+.+++.|+++....+. ++++..+ |+.++.. .+++++||
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~-~a~~~~~----~~~~~~FD 130 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKG-LWEDVAP----TLPDGHFD 130 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEES-CHHHHGG----GSCTTCEE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEee-hHHhhcc----cccccCCc
Confidence 467899999999999999999887567899999999999999999877653 5888888 8876532 24668899
Q ss_pred EEEE-----chhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 262 TVFI-----CGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 262 ~Ivs-----~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.|+. ...++|+ .+...+++++.|+|||||++++.
T Consensus 131 ~i~~D~~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 131 GILYDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp EEEECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eEEEeeeecccchhhh--cchhhhhhhhhheeCCCCEEEEE
Confidence 9974 5566676 56899999999999999997764
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=135.79 Aligned_cols=148 Identities=9% Similarity=0.130 Sum_probs=105.9
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
++.+.++||++|||+|||+|.++.++++. +..+|+++|+|++|++.+++++... .++..+.. |....... .
T Consensus 70 l~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~-d~~~p~~~---~ 142 (233)
T 4df3_A 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILG-DARFPEKY---R 142 (233)
T ss_dssp CSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEES-CTTCGGGG---T
T ss_pred hhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEE-eccCcccc---c
Confidence 34577899999999999999999999987 5579999999999999998887543 37888888 87654210 1
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHH
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMT 334 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~ 334 (381)
+..+++|+|++.. .|. .+...++.++.+.|||||+++++....... .. -|. -....+.++.+.
T Consensus 143 ~~~~~vDvVf~d~--~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d-------~~----~p~--~~~~~~ev~~L~ 205 (233)
T 4df3_A 143 HLVEGVDGLYADV--AQP--EQAAIVVRNARFFLRDGGYMLMAIKARSID-------VT----TEP--SEVYKREIKTLM 205 (233)
T ss_dssp TTCCCEEEEEECC--CCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHH-------HH----TCC--CHHHHHHHHHHH
T ss_pred cccceEEEEEEec--cCC--hhHHHHHHHHHHhccCCCEEEEEEecccCC-------CC----CCh--HHHHHHHHHHHH
Confidence 3457899998752 232 457889999999999999988875322110 00 000 001223345555
Q ss_pred hcCCcEEEEEEecch
Q 047022 335 SSSRLCVEHLENIET 349 (381)
Q Consensus 335 ~~~Gf~v~~~~~~~~ 349 (381)
++||++++..++.+
T Consensus 206 -~~GF~l~e~i~L~p 219 (233)
T 4df3_A 206 -DGGLEIKDVVHLDP 219 (233)
T ss_dssp -HTTCCEEEEEECTT
T ss_pred -HCCCEEEEEEccCC
Confidence 48999988877654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=130.94 Aligned_cols=115 Identities=14% Similarity=0.142 Sum_probs=93.7
Q ss_pred HcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 179 KVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
...++++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++...++.+++++..+ |+.+++ .+.
T Consensus 17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~-----~~~ 90 (197)
T 3eey_A 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD-GHQNMD-----KYI 90 (197)
T ss_dssp HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECS-CGGGGG-----GTC
T ss_pred HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC-CHHHHh-----hhc
Confidence 344678999999999999999999987 347999999999999999999999888678999999 988775 124
Q ss_pred CCcccEEEEchhhHh-------hChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 257 LGNFSTVFICGMIEA-------VGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~-------~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.++||+|++...+.. ....+...+++++.++|||||++++...
T Consensus 91 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 91 DCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp CSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 578999998764410 0112456799999999999999887753
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=135.00 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=111.3
Q ss_pred cccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHH
Q 047022 143 FFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKY 222 (381)
Q Consensus 143 y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~ 222 (381)
+...+++.+.|..+... .. +.....+... ++++.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.
T Consensus 89 ~~~~l~p~~~fgtg~~~--------tt-~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~ 157 (254)
T 2nxc_A 89 IPLVIEPGMAFGTGHHE--------TT-RLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQ 157 (254)
T ss_dssp EEEECCCC-----CCSH--------HH-HHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHH
T ss_pred eEEEECCCccccCCCCH--------HH-HHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHH
Confidence 45567777766544331 11 1222333333 468899999999999999999885 7799999999999999
Q ss_pred HHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 223 AEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 223 a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
+++++..+++. +++..+ |..+.. +.++||+|+++...++ ...+++.+.++|||||+++++....
T Consensus 158 a~~n~~~~~~~--v~~~~~-d~~~~~-------~~~~fD~Vv~n~~~~~-----~~~~l~~~~~~LkpgG~lils~~~~- 221 (254)
T 2nxc_A 158 AEANAKRNGVR--PRFLEG-SLEAAL-------PFGPFDLLVANLYAEL-----HAALAPRYREALVPGGRALLTGILK- 221 (254)
T ss_dssp HHHHHHHTTCC--CEEEES-CHHHHG-------GGCCEEEEEEECCHHH-----HHHHHHHHHHHEEEEEEEEEEEEEG-
T ss_pred HHHHHHHcCCc--EEEEEC-ChhhcC-------cCCCCCEEEECCcHHH-----HHHHHHHHHHHcCCCCEEEEEeecc-
Confidence 99999988875 899999 886632 2378999999865554 4789999999999999988864211
Q ss_pred CCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 303 YDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 303 ~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
....++.+.+. ++||+++.....+
T Consensus 222 ---------------------~~~~~v~~~l~-~~Gf~~~~~~~~~ 245 (254)
T 2nxc_A 222 ---------------------DRAPLVREAMA-GAGFRPLEEAAEG 245 (254)
T ss_dssp ---------------------GGHHHHHHHHH-HTTCEEEEEEEET
T ss_pred ---------------------CCHHHHHHHHH-HCCCEEEEEeccC
Confidence 12445545554 4899998776543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=135.87 Aligned_cols=168 Identities=7% Similarity=0.050 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHcC-CCCCCEEEEecCCc---hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe
Q 047022 167 VGQIRKVSVLIEKVK-LVKGQEVLEIGCGW---GTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241 (381)
Q Consensus 167 ~aq~~~~~~l~~~l~-~~~~~~VLDiGcG~---G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~ 241 (381)
..++..+..+++.+. ..+..+|||||||+ |.++..+.+. ++.+|+++|+|+.|++.|++++.. .++++++.+
T Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~ 135 (274)
T 2qe6_A 59 IENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTA 135 (274)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEEC
T ss_pred HHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEe
Confidence 344556666666664 23457999999999 9887666654 678999999999999999998743 257999999
Q ss_pred cCccccCcC----Cc-cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhh
Q 047022 242 ITVNCLKPT----NM-TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEY 316 (381)
Q Consensus 242 ~d~~~l~~~----~l-~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~y 316 (381)
|+.+.... .+ ..+..++||+|++..+++|+++++...+++++.++|+|||+++++........ ........|
T Consensus 136 -D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~--~~~~~~~~~ 212 (274)
T 2qe6_A 136 -DVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLP--AQQKLARIT 212 (274)
T ss_dssp -CTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCH--HHHHHHHHH
T ss_pred -eCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchH--HHHHHHHHH
Confidence 98763200 00 00223589999999999999876789999999999999999888765432100 011112222
Q ss_pred c--cCCCCCCCHHHHHHHHHhcCCcEEEE
Q 047022 317 I--FPSGCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 317 i--~pgg~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
. .......+..++.+ +. .||++++
T Consensus 213 ~~~~~~~~~~s~~ei~~-~l--~G~~l~~ 238 (274)
T 2qe6_A 213 RENLGEGWARTPEEIER-QF--GDFELVE 238 (274)
T ss_dssp HHHHSCCCCBCHHHHHH-TT--TTCEECT
T ss_pred HhcCCCCccCCHHHHHH-Hh--CCCeEcc
Confidence 1 11235567877744 44 4898764
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=135.59 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=91.4
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC-CCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF-LGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~-~~~f 260 (381)
+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..++++..+ |+.+++... .+. ...|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~-d~~~~~~~~--~~~~~~~~ 125 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENT----AANISYRLL-DGLVPEQAA--QIHSEIGD 125 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSC----CTTEEEEEC-CTTCHHHHH--HHHHHHCS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCc----ccCceEEEC-ccccccccc--ccccccCc
Confidence 467889999999999999999986 5699999999999999998862 237999999 998764110 000 1249
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+|++..+++|+++++...+++++.++|||||++++....
T Consensus 126 d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 126 ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp CEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999999999998778999999999999999997776543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=140.20 Aligned_cols=163 Identities=12% Similarity=0.028 Sum_probs=122.0
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+++.+...+..+|||||||+|.++..++++ ++.+++..|+ |.+++.|+++....+ .++|++..+ |+.+.+
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~g-D~~~~~---- 241 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEG-DFFKDP---- 241 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEES-CTTTSC----
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecC-ccccCC----
Confidence 45666777778889999999999999999998 7889999998 789999998876444 579999999 987654
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC-chhh--hhhhccCCCCCCCHHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL-GPGF--IKEYIFPSGCLPSLRRV 329 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~-~~~~--i~~yi~pgg~lp~~~~~ 329 (381)
...+|+|++..+++++++++...+++++++.|+|||+++|...--....... ...+ +.-....+|...+..++
T Consensus 242 ----~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~ 317 (353)
T 4a6d_A 242 ----LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHY 317 (353)
T ss_dssp ----CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHH
T ss_pred ----CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 2458999999999999988888999999999999999777543211111011 0111 11223456778889998
Q ss_pred HHHHHhcCCcEEEEEEecc
Q 047022 330 TSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 330 ~~~l~~~~Gf~v~~~~~~~ 348 (381)
.+. .+++||+.+++...+
T Consensus 318 ~~l-l~~AGf~~v~v~~~~ 335 (353)
T 4a6d_A 318 HML-LSSAGFRDFQFKKTG 335 (353)
T ss_dssp HHH-HHHHTCEEEEEECCS
T ss_pred HHH-HHHCCCceEEEEEcC
Confidence 554 456999998876543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-14 Score=138.81 Aligned_cols=157 Identities=11% Similarity=0.050 Sum_probs=115.4
Q ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+++.+. +.++.+|||||||+|.++..++++ ++.+++++|+ +.+++.+++. +++++..+ |+.+ +
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~-d~~~-~-- 258 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGG-DMFD-G-- 258 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEEC-CTTT-C--
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEec-CCCC-C--
Confidence 345666665 667889999999999999999987 6789999999 8888776542 47999999 9876 4
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCc-------hhhhhhhccCCCCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLG-------PGFIKEYIFPSGCL 323 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~-------~~~i~~yi~pgg~l 323 (381)
++ .. |+|++..+++|+++++...++++++++|||||+++|............. .++......+++..
T Consensus 259 ----~p-~~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 332 (368)
T 3reo_A 259 ----VP-KG-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKE 332 (368)
T ss_dssp ----CC-CC-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCC
T ss_pred ----CC-CC-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCcc
Confidence 23 23 9999999999998877889999999999999998776433221111110 11111112357778
Q ss_pred CCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 324 PSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 324 p~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
.+..++.+.+. ++||+++++....
T Consensus 333 rt~~e~~~ll~-~AGF~~v~~~~~~ 356 (368)
T 3reo_A 333 RTEKEFQALAM-ASGFRGFKVASCA 356 (368)
T ss_dssp CCHHHHHHHHH-HTTCCEEEEEEEE
T ss_pred CCHHHHHHHHH-HCCCeeeEEEEeC
Confidence 88888855554 5999998876653
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=131.14 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCcc
Q 047022 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVN 245 (381)
Q Consensus 169 q~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~ 245 (381)
+...+..++.....+++.+|||||||+|..++.+++. .+++|+++|+|+++++.|++++...++. +++++..+ |+.
T Consensus 41 ~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g-da~ 119 (221)
T 3dr5_A 41 TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS-RPL 119 (221)
T ss_dssp HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS-CHH
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc-CHH
Confidence 3455666676666566679999999999999999986 3789999999999999999999999997 79999999 987
Q ss_pred ccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+..+ .+..++||+|++... ..++..+++.+.++|||||++++.
T Consensus 120 ~~l~----~~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 120 DVMS----RLANDSYQLVFGQVS-----PMDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp HHGG----GSCTTCEEEEEECCC-----TTTHHHHHHHHHHHEEEEEEEEET
T ss_pred HHHH----HhcCCCcCeEEEcCc-----HHHHHHHHHHHHHHcCCCcEEEEe
Confidence 6531 123588999998743 245678999999999999998874
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-15 Score=128.43 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=95.3
Q ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
.+.+++.+. ..++.+|||+|||+|.++..+++....+|+++|+|+.+++.|++++...++.+++++..+ |+.+..+
T Consensus 19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~-- 95 (177)
T 2esr_A 19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKM-EAERAID-- 95 (177)
T ss_dssp HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECS-CHHHHHH--
T ss_pred HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC-cHHHhHH--
Confidence 345556665 567889999999999999999987446999999999999999999998888778999999 9877321
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHH--hccccCceEEEEcCCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCE--SLLAENGLSCSTVPDQ 301 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~--~~LkpgG~~~i~~~~~ 301 (381)
...++||+|++...+.. ......++.+. ++|+|||.+++..+..
T Consensus 96 ---~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 96 ---CLTGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp ---HBCSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ---hhcCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 12367999999866532 23566777777 9999999988877653
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-14 Score=137.60 Aligned_cols=157 Identities=12% Similarity=0.029 Sum_probs=116.5
Q ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+++.+. ..+..+|||||||+|.++..++++ ++.+++++|+ +.+++.+++. +++++..+ |+.+ +
T Consensus 189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~-D~~~-~-- 256 (364)
T 3p9c_A 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGG-DMFK-E-- 256 (364)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEEC-CTTT-C--
T ss_pred HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeC-CcCC-C--
Confidence 455677776 677899999999999999999987 6789999999 8888776542 58999999 9876 4
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCc-------hhhhhhhccCCCCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLG-------PGFIKEYIFPSGCL 323 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~-------~~~i~~yi~pgg~l 323 (381)
++ .. |+|++..+++++++++...++++++++|||||+++|............. .++...-..+++..
T Consensus 257 ----~p-~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~ 330 (364)
T 3p9c_A 257 ----VP-SG-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRE 330 (364)
T ss_dssp ----CC-CC-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCC
T ss_pred ----CC-CC-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCcc
Confidence 23 23 9999999999998888889999999999999998775432111110010 11111112467778
Q ss_pred CCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 324 PSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 324 p~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
.+..++.+.+ +++||+++++....
T Consensus 331 rt~~e~~~ll-~~AGF~~v~~~~~~ 354 (364)
T 3p9c_A 331 RYEREFQALA-RGAGFTGVKSTYIY 354 (364)
T ss_dssp CBHHHHHHHH-HHTTCCEEEEEEEE
T ss_pred CCHHHHHHHH-HHCCCceEEEEEcC
Confidence 8888885555 46999998877654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=129.00 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=92.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||+|||+|.++..+++. +. +++++|+|+.+++.++++... ..++++..+ |+.+++ +..++||
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~-d~~~~~------~~~~~fD 109 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETM-DVRKLD------FPSASFD 109 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEEC-CTTSCC------SCSSCEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEc-chhcCC------CCCCccc
Confidence 67889999999999999999986 44 899999999999999998753 247999999 998876 4568899
Q ss_pred EEEEchhhHhhC-------------hhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 262 TVFICGMIEAVG-------------HDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 262 ~Ivs~~~l~~~~-------------~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+|++..+++++. ..+...+++++.++|||||.+++..+..
T Consensus 110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 110 VVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp EEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 999999998875 3467899999999999999988877653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=131.17 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=88.6
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
+.++.+|||||||+|..+..++.. ++.+|+++|+|+.+++.|++++...++. ++++..+ |+.+++.. ....++|
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~-d~~~~~~~---~~~~~~f 142 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHD-RAETFGQR---KDVRESY 142 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEES-CHHHHTTC---TTTTTCE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEec-cHHHhccc---ccccCCc
Confidence 357889999999999999999864 6789999999999999999999988886 6999999 99887510 0014789
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+|++.. + .++..+++.+.++|||||.+++.
T Consensus 143 D~V~~~~----~--~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 143 DIVTARA----V--ARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp EEEEEEC----C--SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred cEEEEec----c--CCHHHHHHHHHHhcCCCCEEEEE
Confidence 9999976 2 45789999999999999998775
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-14 Score=121.42 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.....+++.+...++.+|||+|||+|.++..+++ .+.+++++|+|+.+++.+++++...++ +++++..+ |+.+ +
T Consensus 22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~-d~~~-~-- 95 (183)
T 2yxd_A 22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKG-RAED-V-- 95 (183)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEES-CHHH-H--
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEC-Cccc-c--
Confidence 3344667777788899999999999999999998 688999999999999999999998887 47999999 9877 3
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++.++||+|++..+ .+...+++++.++ |||.+++..+.
T Consensus 96 ----~~~~~~D~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 96 ----LDKLEFNKAFIGGT------KNIEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp ----GGGCCCSEEEECSC------SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred ----ccCCCCcEEEECCc------ccHHHHHHHHhhC--CCCEEEEEecc
Confidence 23478999999877 3568899999998 99998888643
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-14 Score=126.53 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=90.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.|++++...++ +++++..+ |+.+++. .+..++||
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~-d~~~~~~----~~~~~~~D 113 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWV-DGSDLTD----YFEDGEID 113 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEEC-CSSCGGG----TSCTTCCS
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeC-CHHHHHh----hcCCCCCC
Confidence 46789999999999999999987 578999999999999999999998888 58999999 9987541 13457899
Q ss_pred EEEEchhhHhhChh------cHHHHHHHHHhccccCceEEEEcC
Q 047022 262 TVFICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+|+++....+.... ....+++++.++|||||.+++.+.
T Consensus 114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 99998543221100 236799999999999999888764
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=126.29 Aligned_cols=122 Identities=15% Similarity=0.072 Sum_probs=94.8
Q ss_pred HHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
+.+++.+. ..++.+|||+|||+|.++..+++....+|+++|+|+.+++.|++++...++.+++++..+ |+.+..+. +
T Consensus 33 ~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~-~ 110 (187)
T 2fhp_A 33 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKM-DANRALEQ-F 110 (187)
T ss_dssp HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHHHH-H
T ss_pred HHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEEC-cHHHHHHH-H
Confidence 34555553 457889999999999999998886447999999999999999999998888778999999 98774210 0
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHH--HhccccCceEEEEcCCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCC--ESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~--~~~LkpgG~~~i~~~~~ 301 (381)
....++||+|++...+.. ......++.+ .++|+|||.+++..+..
T Consensus 111 -~~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 111 -YEEKLQFDLVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp -HHTTCCEEEEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred -HhcCCCCCEEEECCCCCc---hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 011478999999876442 3456777777 88999999998887654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=124.62 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=96.5
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~ 251 (381)
...+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++.+++++..+ |+.+ ++
T Consensus 22 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~--- 96 (192)
T 1l3i_A 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-DAPEALC--- 96 (192)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-CHHHHHT---
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHh-cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-CHHHhcc---
Confidence 345667778889999999999999999999986 58999999999999999999998888668999999 9876 23
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|++...+++ ...+++++.++|+|||.+++..+
T Consensus 97 ----~~~~~D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 97 ----KIPDIDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp ----TSCCEEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ----cCCCCCEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 1258999999877654 48899999999999999888764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=139.94 Aligned_cols=152 Identities=13% Similarity=0.179 Sum_probs=110.6
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC--CeEEEEecCccccCcCC
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQD--TSDYIFVITVNCLKPTN 251 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~--~i~~~~~~d~~~l~~~~ 251 (381)
.+++.+...++.+|||+|||+|.+++.+++. ++.+|+++|+|+.+++.+++++..+++.+ ++++..+ |..+..
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~-D~~~~~--- 288 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN-NALSGV--- 288 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEEC-STTTTC---
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEec-hhhccC---
Confidence 4577777777789999999999999999997 47899999999999999999999888754 4788999 887633
Q ss_pred ccccCCCcccEEEEchhhHh---hChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHH
Q 047022 252 MTELFLGNFSTVFICGMIEA---VGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRR 328 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~---~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~ 328 (381)
..++||+|+++..+++ +.......+++++.++|||||++++..+... .....+.+. |..
T Consensus 289 ----~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~-----~~~~~l~~~-fg~-------- 350 (375)
T 4dcm_A 289 ----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL-----DYFHKLKKI-FGN-------- 350 (375)
T ss_dssp ----CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS-----CHHHHHHHH-HSC--------
T ss_pred ----CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc-----CHHHHHHHh-cCC--------
Confidence 4578999999887765 3333345789999999999999888654322 112233222 211
Q ss_pred HHHHHHhcCCcEEEEEEecch
Q 047022 329 VTSAMTSSSRLCVEHLENIET 349 (381)
Q Consensus 329 ~~~~l~~~~Gf~v~~~~~~~~ 349 (381)
.+.+.++.||.|........
T Consensus 351 -~~~~a~~~~F~V~~~~~~~~ 370 (375)
T 4dcm_A 351 -CTTIATNNKFVVLKAVKLEH 370 (375)
T ss_dssp -CEEEEECSSEEEEEEECCC-
T ss_pred -EEEEeeCCCEEEEEEcCccc
Confidence 12234467899887665543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=8.7e-15 Score=131.68 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=89.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.++.+|||||||+|..+..+++. .+++|+++|+++.+++.|++++...++.+++++..+ |+.+..+..-..+..++|
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG-ASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHGGGTTTTSCCCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEEC-CHHHHHHHHHHhcCCCce
Confidence 36789999999999999999986 378999999999999999999999999878999999 986632110000112689
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|+|++....++. .....+++.+ ++|||||++++..
T Consensus 136 D~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 136 DMVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp SEEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESC
T ss_pred EEEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeC
Confidence 999998776666 2345677777 9999999988754
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=140.95 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHH-------HHcCC-CCCeEEEE
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKV-------KEAGL-QDTSDYIF 240 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~-------~~~gl-~~~i~~~~ 240 (381)
...+..+++.+.++++++|||||||+|.+++.++...++ +|+|||+|+.+++.|+++. ...|+ .++|+|+.
T Consensus 159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 456678899999999999999999999999999977566 5999999999999998754 34565 36899999
Q ss_pred ecCccccCcCCccccCC--CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 241 VITVNCLKPTNMTELFL--GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 241 ~~d~~~l~~~~l~~~~~--~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+ |+.+++ +.. ..||+|+++..+. . .+....|+++.++|||||+++++.
T Consensus 239 G-D~~~lp------~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 239 G-DFLSEE------WRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp C-CTTSHH------HHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESS
T ss_pred C-cccCCc------cccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEee
Confidence 9 998876 222 4799999976652 2 467888999999999999988753
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-14 Score=136.52 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=94.2
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+.+.+.+.+.++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++..+++.+++++..+ |+.+++
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~----- 126 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKG-KIEEVH----- 126 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEES-CTTTSC-----
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEe-eHHHhc-----
Confidence 45555566678899999999999999999986334999999996 99999999999998789999999 998876
Q ss_pred ccCCCcccEEEEchh---hHhhChhcHHHHHHHHHhccccCceEE
Q 047022 254 ELFLGNFSTVFICGM---IEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~---l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
++.++||+|++..+ +.+. ..+..+++++.++|||||.++
T Consensus 127 -~~~~~~D~Ivs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 127 -LPVEKVDVIISEWMGYFLLFE--SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp -CSCSCEEEEEECCCBTTBTTT--CHHHHHHHHHHHHEEEEEEEE
T ss_pred -CCCCcEEEEEEcCchhhccCH--HHHHHHHHHHHhhcCCCcEEE
Confidence 45578999999774 4333 457889999999999999976
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=128.92 Aligned_cols=106 Identities=12% Similarity=0.154 Sum_probs=86.1
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc----cCcCC
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC----LKPTN 251 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~----l~~~~ 251 (381)
++.+.+.++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.+++++... +++.+..+ |+.+ .+
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~-d~~~~~~~~~--- 139 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILG-DANKPQEYAN--- 139 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEEC-CTTCGGGGTT---
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEEC-CCCCcccccc---
Confidence 5556677899999999999999999998743 79999999999999999886543 58999999 9887 44
Q ss_pred ccccCCCcccEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEEEEc
Q 047022 252 MTELFLGNFSTVFICGMIEAVGH-DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+. ++||+|+. +++. .....+++++.++|||||.++++.
T Consensus 140 ---~~-~~~D~v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 178 (230)
T 1fbn_A 140 ---IV-EKVDVIYE-----DVAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp ---TS-CCEEEEEE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---cC-ccEEEEEE-----ecCChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence 23 78999993 3432 223778999999999999988763
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-14 Score=126.06 Aligned_cols=116 Identities=19% Similarity=0.129 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.....+++.+.+.++.+|||||||+|.++..+++..+ .+|+++|+|+.+++.+++++...++. ++++..+ |.....
T Consensus 64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~-d~~~~~ 141 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVG-DGTLGY 141 (215)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEES-CGGGCC
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEEC-CcccCC
Confidence 3445677778888999999999999999999998743 79999999999999999999888775 6999999 885433
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
+ ..++||+|++..+++|++ +++.++|||||++++.++...
T Consensus 142 ~------~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~~~ 181 (215)
T 2yxe_A 142 E------PLAPYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVGRYL 181 (215)
T ss_dssp G------GGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEESSSS
T ss_pred C------CCCCeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEECCCC
Confidence 1 247899999999999885 378999999999988877643
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=130.84 Aligned_cols=106 Identities=17% Similarity=0.212 Sum_probs=89.9
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
..++.+|||||||+|..+..+++. ++.+|+++|+++.+++.|++++...++.+++++..+ |+.+..++ ...++|
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~----~~~~~f 143 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG-NALEQFEN----VNDKVY 143 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES-CGGGCHHH----HTTSCE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-CHHHHHHh----hccCCc
Confidence 346789999999999999999985 478999999999999999999999999889999999 99775310 124789
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+|++... ..++..+++.+.++|||||++++.
T Consensus 144 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 144 DMIFIDAA-----KAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp EEEEEETT-----SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred cEEEEcCc-----HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99998743 245688999999999999998874
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=137.85 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=113.1
Q ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+++.+. +.++.+|||||||+|.++..++++ ++.+++++|+ +.+++.+++. .++++..+ |+.+ +
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~-d~~~-~-- 264 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGG-DMFA-S-- 264 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEEC-CTTT-C--
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeC-Cccc-C--
Confidence 356677775 677889999999999999999987 5789999999 8988877642 36999999 9876 4
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc---CCCCCCCCCC-chhhhhh--hccCCCCCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV---PDQCYDEHSL-GPGFIKE--YIFPSGCLP 324 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~---~~~~~~~~~~-~~~~i~~--yi~pgg~lp 324 (381)
++ . ||+|++..+++|+++.....+++++.++|||||+++|.. +......... ...+... ...+++...
T Consensus 265 ----~~-~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 338 (372)
T 1fp1_D 265 ----VP-Q-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRER 338 (372)
T ss_dssp ----CC-C-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred ----CC-C-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccC
Confidence 22 3 999999999999987666699999999999999987763 2221110000 0111111 113456677
Q ss_pred CHHHHHHHHHhcCCcEEEEEEec
Q 047022 325 SLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
+..++.+.+. ++||+++++...
T Consensus 339 t~~e~~~ll~-~aGf~~~~~~~~ 360 (372)
T 1fp1_D 339 TEKQYEKLSK-LSGFSKFQVACR 360 (372)
T ss_dssp EHHHHHHHHH-HTTCSEEEEEEE
T ss_pred CHHHHHHHHH-HCCCceEEEEEc
Confidence 8888855554 599998887653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-14 Score=129.45 Aligned_cols=117 Identities=10% Similarity=0.154 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.++.+++.+. .++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.+++++...++. ++++..+ |+.+..
T Consensus 98 l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~-d~~~~~-- 172 (276)
T 2b3t_A 98 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQS-DWFSAL-- 172 (276)
T ss_dssp HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECC-STTGGG--
T ss_pred HHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEc-chhhhc--
Confidence 3445666665 57789999999999999999976 5789999999999999999999988876 7999999 987643
Q ss_pred CccccCCCcccEEEEc-------------hhhHhhCh----------hcHHHHHHHHHhccccCceEEEEc
Q 047022 251 NMTELFLGNFSTVFIC-------------GMIEAVGH----------DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~-------------~~l~~~~~----------~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..++||+|+++ .+++|.|. ..+..+++.+.++|||||++++..
T Consensus 173 -----~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 173 -----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp -----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred -----ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 34789999997 23333321 346789999999999999988874
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=138.16 Aligned_cols=108 Identities=23% Similarity=0.242 Sum_probs=91.9
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.+.++.+|||||||+|.++..+++....+|+|+|+| ++++.|++++...++.+++++..+ |+.+++ ++.++|
T Consensus 63 ~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~~------~~~~~f 134 (349)
T 3q7e_A 63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKG-KVEEVE------LPVEKV 134 (349)
T ss_dssp HHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEES-CTTTCC------CSSSCE
T ss_pred ccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEEC-cHHHcc------CCCCce
Confidence 345788999999999999999999733499999999 599999999999999888999999 999886 456899
Q ss_pred cEEEEchhhHhh-ChhcHHHHHHHHHhccccCceEEE
Q 047022 261 STVFICGMIEAV-GHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 261 D~Ivs~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
|+|++..+..++ ....+..+++.+.++|||||+++.
T Consensus 135 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 135 DIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 999997654443 224688999999999999999763
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=128.10 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=89.5
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCc-cc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGN-FS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~-fD 261 (381)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++. +++++..+ |+.+..+. ...++ ||
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-d~~~~~~~----~~~~~~fD 127 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ-SSLDFLKQ----PQNQPHFD 127 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS-CHHHHTTS----CCSSCCEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEEC-CHHHHHHh----hccCCCCC
Confidence 67899999999999999877763459999999999999999999998874 58999999 98776411 12468 99
Q ss_pred EEEEchhhHhhChhcHHHHHHHH--HhccccCceEEEEcCCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCC--ESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~--~~~LkpgG~~~i~~~~~ 301 (381)
+|++...++ . .+...+++.+ .++|||||.++++....
T Consensus 128 ~I~~~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 128 VVFLDPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EEEECCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EEEECCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 999987643 3 4577888888 66899999988876543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.1e-14 Score=130.04 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=88.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++++.+|||+|||+|.+++.+++....+|+|+|+|+.+++.|++++..+++.+++++..+ |+.++. ..++||
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~-D~~~~~-------~~~~fD 194 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM-DNRDFP-------GENIAD 194 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-CTTTCC-------CCSCEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC-CHHHhc-------ccCCcc
Confidence 357899999999999999999987323799999999999999999999999878999999 998887 357899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+|++... .....+++++.++|||||.+++...
T Consensus 195 ~Vi~~~p------~~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 195 RILMGYV------VRTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp EEEECCC------SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCc------hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence 9999622 2346788999999999999877653
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-14 Score=127.95 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
......+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+|+.+++.++++....+ ++++..+ |..+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~-d~~~~~- 129 (231)
T 1vbf_A 56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN---NIKLILG-DGTLGY- 129 (231)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS---SEEEEES-CGGGCC-
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEEC-Cccccc-
Confidence 345567788888889999999999999999999986 6899999999999999999987654 7999999 987733
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
...++||+|++..+++|+. +++.++|||||++++..+...
T Consensus 130 -----~~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 130 -----EEEKPYDRVVVWATAPTLL--------CKPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp -----GGGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEECSSS
T ss_pred -----ccCCCccEEEECCcHHHHH--------HHHHHHcCCCcEEEEEEcCCC
Confidence 1347899999999999885 258899999999988877654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=123.75 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=82.5
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 180 VKLVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+.++++.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.+.+..... .++.+..+ |....... . ...+
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~-d~~~~~~~--~-~~~~ 125 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLF-DASKPWKY--S-GIVE 125 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECS-CTTCGGGT--T-TTCC
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEc-CCCCchhh--c-cccc
Confidence 456789999999999999999999873 369999999999887776665543 36888888 88764100 0 0237
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+||+|++.. .. +.+...+++++.++|||||+++++.+
T Consensus 126 ~fD~V~~~~-~~---~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 126 KVDLIYQDI-AQ---KNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp CEEEEEECC-CS---TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEEec-cC---hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 899999972 11 12345669999999999999888753
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.1e-14 Score=127.41 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=95.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEecCccccCcC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEA-GLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~-gl~~~i~~~~~~d~~~l~~~ 250 (381)
..++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++... + .+++++..+ |+.+.+
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~-d~~~~~-- 161 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLG-KLEEAE-- 161 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEES-CGGGCC--
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEEC-chhhcC--
Confidence 46778888899999999999999999999987 2689999999999999999999887 7 458999999 998874
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++.++||+|++. .+ +...+++++.++|+|||.+++..+.
T Consensus 162 ----~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 162 ----LEEAAYDGVALD-----LM--EPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp ----CCTTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred ----CCCCCcCEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 345789999984 43 4568899999999999998887653
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=128.14 Aligned_cols=91 Identities=20% Similarity=0.129 Sum_probs=79.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCccccC-CCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMTELF-LGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~~~~-~~~f 260 (381)
.++.+|||||||+|.++..+++. +.+|+++|+|+.+++.++++ ..++++..+ |+. .++ +. +++|
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~-d~~~~~~------~~~~~~f 112 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN------APHADVYEW-NGKGELP------AGLGAPF 112 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH------CTTSEEEEC-CSCSSCC------TTCCCCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh------CCCceEEEc-chhhccC------CcCCCCE
Confidence 57889999999999999999996 88999999999999999988 247999999 994 444 34 6899
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
|+|++. .++..+++++.++|||||.++
T Consensus 113 D~v~~~--------~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 113 GLIVSR--------RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp EEEEEE--------SCCSGGGGGHHHHEEEEEEEE
T ss_pred EEEEeC--------CCHHHHHHHHHHHcCCCcEEE
Confidence 999997 245788999999999999988
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-14 Score=126.80 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=89.0
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.|++++...++. ++++..+ |+.+++. .++.++||.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~-d~~~l~~----~~~~~~~d~ 111 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNI-DADTLTD----VFEPGEVKR 111 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECC-CGGGHHH----HCCTTSCCE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeC-CHHHHHh----hcCcCCcCE
Confidence 5779999999999999999987 5789999999999999999999988874 7999999 9987531 134578999
Q ss_pred EEEchhhHhhChh------cHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|++.....+.... ....+++++.++|||||.+++.+..
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9886432211100 1368999999999999999887643
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-14 Score=128.66 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=97.4
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...++..+.+.++.+|||+|||+|.++..+++. ++.+++++|+|+.+++.|++++...++.+++++..+ |+.+..
T Consensus 82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~-- 158 (255)
T 3mb5_A 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK-DIYEGI-- 158 (255)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS-CGGGCC--
T ss_pred HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC-chhhcc--
Confidence 346778888899999999999999999999987 278999999999999999999999998877999999 998653
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+.++||+|++. .+ +...+++++.++|+|||++++..+.
T Consensus 159 -----~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 159 -----EEENVDHVILD-----LP--QPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp -----CCCSEEEEEEC-----SS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred -----CCCCcCEEEEC-----CC--CHHHHHHHHHHHcCCCCEEEEEECC
Confidence 45789999984 43 4577899999999999998887643
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-14 Score=146.51 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=89.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..+...+ ..+.+|||||||+|.++..+|+. |++|+|||+|+.+++.|+.++...|.. ++++.++ +++++..
T Consensus 58 ~~~~~~~--~~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~-~~~~~~~---- 128 (569)
T 4azs_A 58 DNLSRAL--GRPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPDF-AAEFRVG-RIEEVIA---- 128 (569)
T ss_dssp HHHHHHH--TSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEEC-CHHHHHH----
T ss_pred HHHHhhc--CCCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEEC-CHHHHhh----
Confidence 3444444 35679999999999999999996 999999999999999999999877643 6999999 9988731
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.+.+++||+|+|.+++||+++.+....+..+.+.|+++|..+
T Consensus 129 ~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~ 170 (569)
T 4azs_A 129 ALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAV 170 (569)
T ss_dssp HCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEE
T ss_pred hccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhcccccee
Confidence 134578999999999999965432344556777889998844
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-14 Score=137.12 Aligned_cols=114 Identities=19% Similarity=0.227 Sum_probs=96.4
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
+.+...+...++.+|||||||+|.++..+++. +. +|+|+|+| .+++.|++++..+++.++++++.+ |+.+++
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~---- 125 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEG-SVEDIS---- 125 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEES-CGGGCC----
T ss_pred HHHHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEEC-chhhcC----
Confidence 34555566778999999999999999999996 65 99999999 999999999999999888999999 999887
Q ss_pred cccCCCcccEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGH-DYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
++ ++||+|++..+.+++.. ..+..+++.+.++|||||.++++
T Consensus 126 --~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 126 --LP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp --CS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred --cC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 23 88999999765555432 35788999999999999997653
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=131.33 Aligned_cols=124 Identities=13% Similarity=0.150 Sum_probs=95.1
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH---cCCCCCeEEEEecCccccCcCC
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKE---AGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~---~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+...+...++.+|||+|||+|.+++.++++ ++.+|+++|+++.+++.|++++.. .++.+++++..+ |+.+..+..
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~-D~~~~~~~~ 106 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEA-DVTLRAKAR 106 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEEC-CTTCCHHHH
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeC-CHHHHhhhh
Confidence 445566678889999999999999999987 467999999999999999999987 788778999999 998762100
Q ss_pred c-cccCCCcccEEEEchhh----------------HhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 M-TELFLGNFSTVFICGMI----------------EAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l-~~~~~~~fD~Ivs~~~l----------------~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
. ..+..++||+|+++-.+ .|.....+..+++.+.++|||||++++..+.
T Consensus 107 ~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 107 VEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp HHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred hhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 0 00245789999997222 1222234788999999999999998887654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-15 Score=137.53 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=90.4
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++.+++++..+ |+.+++ ..++||+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~-------~~~~~D~v 148 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICG-DFLLLA-------SFLKADVV 148 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHG-------GGCCCSEE
T ss_pred CCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEEC-ChHHhc-------ccCCCCEE
Confidence 7889999999999999999996 79999999999999999999999888668999999 998876 34789999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
++...+++.. +....+.++.++|+|||.+++.
T Consensus 149 ~~~~~~~~~~--~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 149 FLSPPWGGPD--YATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp EECCCCSSGG--GGGSSSBCTTTSCSSCHHHHHH
T ss_pred EECCCcCCcc--hhhhHHHHHHhhcCCcceeHHH
Confidence 9999888874 3444677899999999996654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-14 Score=129.41 Aligned_cols=106 Identities=11% Similarity=0.123 Sum_probs=89.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
..++.+|||||||+|..++.++.. ++.+|+++|+|+.+++.|++++...++. ++++..+ |+++++.. ....++|
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~-d~~~~~~~---~~~~~~f 152 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWG-RAEVLARE---AGHREAY 152 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEEC-CHHHHTTS---TTTTTCE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEEC-cHHHhhcc---cccCCCc
Confidence 356889999999999999999887 6789999999999999999999999986 5999999 99887621 0123789
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|+|+|..+ .++..+++.+.++|||||++++..
T Consensus 153 D~I~s~a~------~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 153 ARAVARAV------APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp EEEEEESS------CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred eEEEECCc------CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 99999743 346889999999999999977654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-14 Score=131.20 Aligned_cols=111 Identities=17% Similarity=0.156 Sum_probs=90.5
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEecCccccCcC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEA-GLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~-gl~~~i~~~~~~d~~~l~~~ 250 (381)
..+++.+.+.++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.|++++... +. +++++..+ |+.+..
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~-d~~~~~-- 175 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRS-DIADFI-- 175 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECS-CTTTCC--
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEEC-chhccC--
Confidence 46677788889999999999999999999986 3789999999999999999999877 64 48999999 987732
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+.++||+|++ +++ ++..+++++.++|||||++++..+.
T Consensus 176 -----~~~~fD~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 176 -----SDQMYDAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp -----CSCCEEEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred -----cCCCccEEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 4578999998 353 4578999999999999999888753
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-14 Score=126.98 Aligned_cols=112 Identities=11% Similarity=0.097 Sum_probs=87.7
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
++.+.++++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+.+.+... .++++..+ |+.+.... .
T Consensus 70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~-d~~~~~~~---~ 142 (233)
T 2ipx_A 70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIE-DARHPHKY---R 142 (233)
T ss_dssp CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECS-CTTCGGGG---G
T ss_pred HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEc-ccCChhhh---c
Confidence 345667889999999999999999999873 479999999999888888777664 47999999 98773200 0
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+..++||+|++... .......+++++.++|||||.++++..
T Consensus 143 ~~~~~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 143 MLIAMVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp GGCCCEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCcEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 23578999999643 223345678899999999999888754
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-13 Score=122.24 Aligned_cols=145 Identities=13% Similarity=0.114 Sum_probs=96.5
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 180 VKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
+.++||.+|||+|||+|..+.++++. +..+|+++|+|+.|++...+..... .++.+..+ |++..... ....
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~-Da~~~~~~---~~~~ 144 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLA-DARFPQSY---KSVV 144 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEEC-CTTCGGGT---TTTC
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEc-ccccchhh---hccc
Confidence 44889999999999999999999986 3579999999999876555544433 47999999 98764310 0123
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcC
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSS 337 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~ 337 (381)
++||+|++.... + .....+.+.+.+.|||||+++++......+.. +.|... ..+....+.+ +
T Consensus 145 ~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~t----------~~~~e~---~~~~~~~L~~-~ 206 (232)
T 3id6_C 145 ENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVT----------KDPKEI---YKTEVEKLEN-S 206 (232)
T ss_dssp CCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC-----------------CCSSSS---TTHHHHHHHH-T
T ss_pred cceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCcccC----------CCHHHH---HHHHHHHHHH-C
Confidence 689999998443 1 22344556677799999999888643221110 111111 1233455554 7
Q ss_pred CcEEEEEEecch
Q 047022 338 RLCVEHLENIET 349 (381)
Q Consensus 338 Gf~v~~~~~~~~ 349 (381)
||++.+..++.+
T Consensus 207 gf~~~~~~~l~p 218 (232)
T 3id6_C 207 NFETIQIINLDP 218 (232)
T ss_dssp TEEEEEEEECTT
T ss_pred CCEEEEEeccCC
Confidence 999998877643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=127.16 Aligned_cols=106 Identities=14% Similarity=0.071 Sum_probs=89.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-CCCc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-T-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL-FLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~-~~~~ 259 (381)
.++.+|||||||+|..+..+++. + +.+|+++|+|+.+++.|++++...++.+++++..+ |+.+..+. . ..++
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~l~~----~~~~~~ 136 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG-PALQSLES----LGECPA 136 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHT----CCSCCC
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHh----cCCCCC
Confidence 46789999999999999999987 3 68999999999999999999999999889999999 98763211 1 1358
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
||+|++... ..+...+++++.++|||||++++..
T Consensus 137 fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 137 FDLIFIDAD-----KPNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp CSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred eEEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 999998643 3456889999999999999988764
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=134.96 Aligned_cols=155 Identities=16% Similarity=0.224 Sum_probs=113.4
Q ss_pred HHHHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 170 IRKVSVLIEKVK--LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
...++.+.+.+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++..+++. +++..+ |..+.
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~-D~~~~ 292 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANALK--AQALHS-DVDEA 292 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEEC-STTTT
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEc-chhhc
Confidence 334445544442 346789999999999999999996 889999999999999999999988764 899999 99887
Q ss_pred CcCCccccCCCcccEEEEchhhHh---hChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEA---VGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLP 324 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~---~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp 324 (381)
. ...++||+|+++..+++ ........+++++.++|||||.+++...... ....++.+. |..
T Consensus 293 ~------~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l-----~~~~~l~~~-f~~---- 356 (381)
T 3dmg_A 293 L------TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL-----KYEPLLEEK-FGA---- 356 (381)
T ss_dssp S------CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS-----CHHHHHHHH-HSC----
T ss_pred c------ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC-----ChHHHHHHh-hcc----
Confidence 6 23479999999988877 2235678999999999999999888764432 112333332 111
Q ss_pred CHHHHHHHHHhcCCcEEEEEEecchh
Q 047022 325 SLRRVTSAMTSSSRLCVEHLENIETH 350 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~~~~~~ 350 (381)
. +.+ ++.||+|........+
T Consensus 357 -v----~~l-~~~gF~Vl~a~~~~~~ 376 (381)
T 3dmg_A 357 -F----QTL-KVAEYKVLFAEKRGRH 376 (381)
T ss_dssp -C----EEE-EESSSEEEEEECC---
T ss_pred -E----EEE-eCCCEEEEEEEEeccc
Confidence 1 223 4689999877655443
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.7e-14 Score=132.92 Aligned_cols=113 Identities=20% Similarity=0.289 Sum_probs=92.9
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+.+.+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++..+++.+++++..+ |+.+++
T Consensus 29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~------ 100 (328)
T 1g6q_1 29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRG-KLEDVH------ 100 (328)
T ss_dssp HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEES-CTTTSC------
T ss_pred HHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEEC-chhhcc------
Confidence 344444455788999999999999999998633499999999 599999999999999889999999 998876
Q ss_pred cCCCcccEEEEchhhHhhC-hhcHHHHHHHHHhccccCceEE
Q 047022 255 LFLGNFSTVFICGMIEAVG-HDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
++.++||+|++..+..++. ...+..++..+.++|||||.++
T Consensus 101 ~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 3457899999986544432 2457889999999999999976
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-14 Score=123.51 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=87.0
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||+|||+|.++..+++. ++.+++++|+|+.+++.+++++...++. ++++..+ |+.+.+ +.++||+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~-d~~~~~-------~~~~~D~ 135 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQS-RVEEFP-------SEPPFDG 135 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEEC-CTTTSC-------CCSCEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEec-chhhCC-------ccCCcCE
Confidence 4789999999999999999986 5789999999999999999999988876 4999999 998765 3478999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|++... .++..+++.+.++|+|||.+++..
T Consensus 136 i~~~~~------~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 136 VISRAF------ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp EECSCS------SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEEecc------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 998642 346899999999999999988864
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=125.82 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=90.3
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcC-CHHHHHHHHHHH-----HHcCCC----CCeEEEE
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITL-SELQLKYAEIKV-----KEAGLQ----DTSDYIF 240 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDi-s~~~~~~a~~~~-----~~~gl~----~~i~~~~ 240 (381)
..+.+.......++.+|||+|||+|.+++.+++. +. +|+++|+ |+.+++.|++++ ...++. +++++..
T Consensus 67 l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~ 145 (281)
T 3bzb_A 67 LADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVP 145 (281)
T ss_dssp HHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEE
T ss_pred HHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEE
Confidence 3344555444567889999999999999999885 55 9999999 899999999998 555554 4788887
Q ss_pred ecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccc---c--CceEEEEc
Q 047022 241 VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLA---E--NGLSCSTV 298 (381)
Q Consensus 241 ~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lk---p--gG~~~i~~ 298 (381)
. ++.+........+..++||+|++..+++|. .+...+++.+.++|+ | ||++++..
T Consensus 146 ~-~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 146 Y-RWGDSPDSLQRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp C-CTTSCTHHHHHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred e-cCCCccHHHHhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 7 765432000000024789999999999887 568999999999999 9 99976654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.7e-14 Score=126.29 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=95.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.....+++.+.+.++.+|||||||+|.++..+++..+.+|+++|+++.+++.|++++...++. ++++..+ |.....+
T Consensus 78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~-d~~~~~~- 154 (235)
T 1jg1_A 78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILG-DGSKGFP- 154 (235)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEES-CGGGCCG-
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEC-CcccCCC-
Confidence 344567777788899999999999999999999874489999999999999999999988875 5999999 8732110
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
...+||+|++..+++++++ ++.++|||||++++++++..
T Consensus 155 -----~~~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 155 -----PKAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp -----GGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECSSS
T ss_pred -----CCCCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEecCC
Confidence 2245999999998888742 67899999999999887654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.8e-14 Score=125.30 Aligned_cols=110 Identities=17% Similarity=0.104 Sum_probs=89.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.++.+|||||||+|..+..+++.. +++|+++|+++.+++.|++++...++.+++++..+ |+.+..+. +.....++|
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~-~~~~~~~~f 134 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTG-LALDSLQQ-IENEKYEPF 134 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHH-HHHTTCCCC
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHH-HHhcCCCCc
Confidence 467899999999999999999873 68999999999999999999999999888999999 98654210 000012579
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
|+|++.... .....+++.+.++|||||++++...
T Consensus 135 D~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 135 DFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp SEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred CEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999987542 3568899999999999998887643
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-13 Score=120.46 Aligned_cols=106 Identities=18% Similarity=0.137 Sum_probs=89.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
++++.+|||||||+|.+++.+++. +..+|+++|+++.+++.|++++..+++.+++++..+ |..+... +.++|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~g-D~l~~~~------~~~~~ 91 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLA-NGLSAFE------EADNI 91 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEEC-SGGGGCC------GGGCC
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-chhhccc------ccccc
Confidence 357899999999999999999997 245899999999999999999999999989999999 9877651 22379
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|+|+..+|...+ ...++....+.|+++|+++++.
T Consensus 92 D~IviaGmGg~l----I~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 92 DTITICGMGGRL----IADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp CEEEEEEECHHH----HHHHHHHTGGGGTTCCEEEEEE
T ss_pred CEEEEeCCchHH----HHHHHHHHHHHhCcCCEEEEEC
Confidence 998877655433 6788889999999999877764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=125.52 Aligned_cols=125 Identities=12% Similarity=0.004 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHc---CCCCC---------
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEA---GLQDT--------- 235 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~---gl~~~--------- 235 (381)
..+..+++.+...++.+|||+|||+|.++..+++. .+.+|+|+|+|+.+++.|++++... ++..+
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~ 117 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE 117 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence 44555666665456789999999999999999875 3579999999999999999887654 43222
Q ss_pred ----------------eE-------------EEEecCccccCcCCcccc-CCCcccEEEEchhhHhhCh-------hcHH
Q 047022 236 ----------------SD-------------YIFVITVNCLKPTNMTEL-FLGNFSTVFICGMIEAVGH-------DYME 278 (381)
Q Consensus 236 ----------------i~-------------~~~~~d~~~l~~~~l~~~-~~~~fD~Ivs~~~l~~~~~-------~~~~ 278 (381)
++ +..+ |+.+..+. ... ..++||+|+++..+.+... +...
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-D~~~~~~~--~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~ 194 (250)
T 1o9g_A 118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTA-DVFDPRAL--SAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVA 194 (250)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEEC-CTTCGGGH--HHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred hcccccchhhhhhhhhhhhhccccccccccceeec-cccccccc--ccccCCCCceEEEeCCCeeccccccccccccHHH
Confidence 66 9999 88764200 000 2248999999865554432 3467
Q ss_pred HHHHHHHhccccCceEEEEc
Q 047022 279 ELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 279 ~~l~~~~~~LkpgG~~~i~~ 298 (381)
.+++++.++|||||+++++.
T Consensus 195 ~~l~~~~~~LkpgG~l~~~~ 214 (250)
T 1o9g_A 195 GLLRSLASALPAHAVIAVTD 214 (250)
T ss_dssp HHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEeC
Confidence 89999999999999988843
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=133.60 Aligned_cols=122 Identities=10% Similarity=0.147 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHH-------HHHHHHcCCC-CCeEEEEe
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYA-------EIKVKEAGLQ-DTSDYIFV 241 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a-------~~~~~~~gl~-~~i~~~~~ 241 (381)
..+..+++.+.+.++.+|||||||+|.++..+++..+ .+|+|+|+++.+++.| ++++...|+. .++++..+
T Consensus 229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g 308 (433)
T 1u2z_A 229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence 4455778888889999999999999999999998744 5899999999999988 8888888853 68999987
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|....+.. + ....++||+|+++..+ +. .++..+++++.++|||||++++..
T Consensus 309 -D~~~~~~~-~-~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 309 -KSFVDNNR-V-AELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp -SCSTTCHH-H-HHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred -Cccccccc-c-ccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEee
Confidence 64321100 0 0013689999987655 22 467888999999999999988863
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=125.20 Aligned_cols=109 Identities=23% Similarity=0.311 Sum_probs=91.1
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-CC
Q 047022 180 VKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL-FL 257 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~-~~ 257 (381)
+...++.+|||||||+|..+..+++. ++.+|+++|+++.+++.|++++...++.+++++..+ |+.+..+. . ..
T Consensus 50 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~----~~~~ 124 (233)
T 2gpy_A 50 LKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG-DALQLGEK----LELY 124 (233)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-CGGGSHHH----HTTS
T ss_pred HhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-CHHHHHHh----cccC
Confidence 33457789999999999999999987 368999999999999999999999888778999999 98774210 1 14
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++||+|++.... .+...+++.+.++|+|||++++..
T Consensus 125 ~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 125 PLFDVLFIDAAK-----GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp CCEEEEEEEGGG-----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCccEEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 789999997653 356899999999999999988864
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.5e-14 Score=123.61 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=87.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++.+|||+|||+|.+++.++++...+|+++|+|+.+++.|++++...++ +++++..+ |+.+..+ ...++||+|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~-D~~~~~~-----~~~~~fD~V 126 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNS-NAMSFLA-----QKGTPHNIV 126 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECS-CHHHHHS-----SCCCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEC-CHHHHHh-----hcCCCCCEE
Confidence 6789999999999999998876335999999999999999999998887 58999999 9877321 234789999
Q ss_pred EEchhhHhhChhcHHHHHHHHHh--ccccCceEEEEcCC
Q 047022 264 FICGMIEAVGHDYMEELFSCCES--LLAENGLSCSTVPD 300 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~--~LkpgG~~~i~~~~ 300 (381)
++...++ . .....+++.+.+ +|+|||+++++...
T Consensus 127 ~~~~p~~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 127 FVDPPFR-R--GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp EECCSSS-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred EECCCCC-C--CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 9976633 2 356778888866 59999998887643
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=122.32 Aligned_cols=112 Identities=16% Similarity=0.136 Sum_probs=91.8
Q ss_pred HHHHHcC--CCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEecCccc
Q 047022 175 VLIEKVK--LVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGL----QDTSDYIFVITVNC 246 (381)
Q Consensus 175 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl----~~~i~~~~~~d~~~ 246 (381)
.+++.+. ++++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++...++ .+++++..+ |...
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~ 144 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-DGRM 144 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES-CGGG
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC-Cccc
Confidence 4555554 67899999999999999999998643 6999999999999999999887664 357999999 9876
Q ss_pred cCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 247 LKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 247 l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
.. ...++||+|++...++++. +++.++|||||+++++++..
T Consensus 145 ~~------~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 145 GY------AEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp CC------GGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESCT
T ss_pred Cc------ccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEecC
Confidence 54 2347899999998776663 57889999999998887653
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7e-13 Score=119.32 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=87.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCccccCCCc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTELFLGN 259 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~~~~~ 259 (381)
++++.+|||||||+|.+++.+++. +..+|+++|+++.+++.|++++..+++.+++++..+ |..+ ++ ..++
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~-d~l~~l~-------~~~~ 84 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLA-NGLAAFE-------ETDQ 84 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEEC-SGGGGCC-------GGGC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC-chhhhcc-------cCcC
Confidence 357889999999999999999987 345899999999999999999999999889999999 9854 33 1136
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
||+|+..++-.. -...++..+...|+|+|+++++.
T Consensus 85 ~D~IviaG~Gg~----~i~~Il~~~~~~L~~~~~lVlq~ 119 (225)
T 3kr9_A 85 VSVITIAGMGGR----LIARILEEGLGKLANVERLILQP 119 (225)
T ss_dssp CCEEEEEEECHH----HHHHHHHHTGGGCTTCCEEEEEE
T ss_pred CCEEEEcCCChH----HHHHHHHHHHHHhCCCCEEEEEC
Confidence 999988765332 35788999999999999988754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=126.74 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=97.1
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc-C-CCCCeEEEEecCccccC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEA-G-LQDTSDYIFVITVNCLK 248 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~-g-l~~~i~~~~~~d~~~l~ 248 (381)
...++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.|++++... + +.+++++..+ |+.+.+
T Consensus 88 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~-d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS-DLADSE 166 (280)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS-CGGGCC
T ss_pred HHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEEC-chHhcC
Confidence 456778888899999999999999999999986 3689999999999999999999877 4 4568999999 998875
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+..++||+|++. ++ ++..+++++.++|+|||.+++..+.
T Consensus 167 ------~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 167 ------LPDGSVDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp ------CCTTCEEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred ------CCCCceeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 345789999984 42 3568899999999999999888764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-13 Score=120.98 Aligned_cols=111 Identities=19% Similarity=0.151 Sum_probs=85.8
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
++.+.+.++.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.+++++... .++++..+ |+.+.... .
T Consensus 66 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~-d~~~~~~~---~ 138 (227)
T 1g8a_A 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILG-DATKPEEY---R 138 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEEC-CTTCGGGG---T
T ss_pred HHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEc-cCCCcchh---h
Confidence 444457789999999999999999999873 479999999999999998887643 58999999 98763200 0
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...++||+|++... .......+++++.++|||||.+++..
T Consensus 139 ~~~~~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 139 ALVPKVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp TTCCCEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 12368999998643 11233456999999999999988764
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-14 Score=128.19 Aligned_cols=121 Identities=16% Similarity=0.073 Sum_probs=84.6
Q ss_pred HHHHHHHHcCC--CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc-
Q 047022 172 KVSVLIEKVKL--VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL- 247 (381)
Q Consensus 172 ~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l- 247 (381)
.+..++..+.. .++.+|||+|||+|.++..++++ ++.+|+|+|+|+.+++.|++++...++.+++++..+ |+.+.
T Consensus 51 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~ 129 (254)
T 2h00_A 51 WVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKV-PQKTLL 129 (254)
T ss_dssp HHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-CTTCSS
T ss_pred HHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEc-chhhhh
Confidence 33444443332 25779999999999999998876 578999999999999999999999998878999999 97652
Q ss_pred CcCCccccC---CCcccEEEEchhhHhhCh-------------hcHHHHHHHHHhccccCceEEEE
Q 047022 248 KPTNMTELF---LGNFSTVFICGMIEAVGH-------------DYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 248 ~~~~l~~~~---~~~fD~Ivs~~~l~~~~~-------------~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.. .+. +++||+|+++-.+.+.+. .....++.++.++|||||.+.+.
T Consensus 130 ~~----~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 130 MD----ALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp TT----TSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hh----hhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 10 022 258999999844333220 01235678899999999986543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-14 Score=120.63 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=86.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++.+|||+|||+|.++..+++. +..|+|+|+|+.+++.|++++...++ ++++..+ |+.+..+. . ....++||+|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~-d~~~~~~~-~-~~~~~~~D~i 114 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVAL-PVEVFLPE-A-KAQGERFTVA 114 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECS-CHHHHHHH-H-HHTTCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEec-cHHHHHHh-h-hccCCceEEE
Confidence 6789999999999999999986 77799999999999999999988877 7999999 98764210 0 0012479999
Q ss_pred EEchhhHhhChhcHHHHHHHHH--hccccCceEEEEcCCCC
Q 047022 264 FICGMIEAVGHDYMEELFSCCE--SLLAENGLSCSTVPDQC 302 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~--~~LkpgG~~~i~~~~~~ 302 (381)
++...++ . .....++.+. ++|||||.++++.+...
T Consensus 115 ~~~~~~~--~--~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 115 FMAPPYA--M--DLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp EECCCTT--S--CTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred EECCCCc--h--hHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 9987654 1 2355666666 99999999888876543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-13 Score=121.78 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=96.3
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..++..+.+.++.+|||+|||+|.++..+++. +.+++++|+++.+++.|+++....++.+++++..+ |+.+..
T Consensus 81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~----- 153 (248)
T 2yvl_A 81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNV-DFKDAE----- 153 (248)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECS-CTTTSC-----
T ss_pred HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEc-Chhhcc-----
Confidence 46777888889999999999999999999997 88999999999999999999998888778999999 887643
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
...++||+|++. .+ ++..+++++.++|+|||++++..+.
T Consensus 154 -~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 154 -VPEGIFHAAFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp -CCTTCBSEEEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred -cCCCcccEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 134689999984 32 4568899999999999999888754
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=124.65 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=88.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-T-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|++++...++.+++++..+ |+.+..+........++|
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS-PAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHHHTTTCTTCE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeC-CHHHHHHHhhhccCCCCc
Confidence 36779999999999999999986 2 68999999999999999999999999888999999 986542100000011789
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|+|++... ..++..+++.+.++|||||++++..
T Consensus 142 D~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 142 DLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99997643 2457889999999999999988764
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-13 Score=125.19 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=95.6
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++...++.+++++..+ |+.+..
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~--- 177 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR-DISEGF--- 177 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC-CGGGCC---
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC-CHHHcc---
Confidence 46778888899999999999999999999987 268999999999999999999998888668999999 987653
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+.++||+|++. .+ ++..+++++.++|+|||.+++..+
T Consensus 178 ----~~~~~D~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 178 ----DEKDVDALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp ----SCCSEEEEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ----cCCccCEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 34689999984 32 456889999999999999888764
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-14 Score=128.06 Aligned_cols=124 Identities=18% Similarity=0.130 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCC-CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKL-VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~-~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..++.+++.+.. .++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.|++++...++ ++++..+ |+.+..
T Consensus 16 ~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~-d~~~~~ 92 (215)
T 4dzr_A 16 VLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAA-DGIEWL 92 (215)
T ss_dssp HHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHH-HHHHHH
T ss_pred HHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEc-chHhhh
Confidence 445566777665 68899999999999999999987 366999999999999999999887766 6888888 887622
Q ss_pred cCCccccCCCcccEEEEch------hhHhhChhc------------------HHHHHHHHHhccccCce-EEEEcC
Q 047022 249 PTNMTELFLGNFSTVFICG------MIEAVGHDY------------------MEELFSCCESLLAENGL-SCSTVP 299 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~------~l~~~~~~~------------------~~~~l~~~~~~LkpgG~-~~i~~~ 299 (381)
+.. ....++||+|+++. .++++.... +..+++++.++|||||+ +++..+
T Consensus 93 ~~~--~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 93 IER--AERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHH--HHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hhh--hhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 000 00127899999953 223322111 27888999999999999 666654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=117.44 Aligned_cols=120 Identities=12% Similarity=0.114 Sum_probs=90.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.++.+|||+|||+|.++..+++. + +|+|+|+|+.+++. ..++++..+ |+.+.. ..++||+
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~----------~~~~~~~~~-d~~~~~-------~~~~fD~ 81 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES----------HRGGNLVRA-DLLCSI-------NQESVDV 81 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT----------CSSSCEEEC-STTTTB-------CGGGCSE
T ss_pred CCCCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc----------ccCCeEEEC-Chhhhc-------ccCCCCE
Confidence 46679999999999999999986 5 99999999999887 247999999 987732 4488999
Q ss_pred EEEchhhHhhChh-------cHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHh
Q 047022 263 VFICGMIEAVGHD-------YMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTS 335 (381)
Q Consensus 263 Ivs~~~l~~~~~~-------~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~ 335 (381)
|+++..+.+.++. +...+++++.+.| |||.+++..+.. ....++.+.+.
T Consensus 82 i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~----------------------~~~~~l~~~l~- 137 (170)
T 3q87_B 82 VVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA----------------------NRPKEVLARLE- 137 (170)
T ss_dssp EEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG----------------------GCHHHHHHHHH-
T ss_pred EEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC----------------------CCHHHHHHHHH-
Confidence 9998877754332 3467888888888 999988765321 12344444444
Q ss_pred cCCcEEEEEEe
Q 047022 336 SSRLCVEHLEN 346 (381)
Q Consensus 336 ~~Gf~v~~~~~ 346 (381)
++||.++.+..
T Consensus 138 ~~gf~~~~~~~ 148 (170)
T 3q87_B 138 ERGYGTRILKV 148 (170)
T ss_dssp HTTCEEEEEEE
T ss_pred HCCCcEEEEEe
Confidence 58998876554
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=128.75 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=89.0
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD-TSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~-~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
..++.+|||+|||+|.+++.+++. +++|+++|+|+.+++.|++++..+++.+ +++++.+ |+.+..+.. ....++|
T Consensus 151 ~~~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~-D~~~~l~~~--~~~~~~f 226 (332)
T 2igt_A 151 ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE-DAMKFIQRE--ERRGSTY 226 (332)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECS-CHHHHHHHH--HHHTCCB
T ss_pred cCCCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC-cHHHHHHHH--HhcCCCc
Confidence 346789999999999999999985 7799999999999999999999988875 5999999 987753100 0013689
Q ss_pred cEEEEchh----------hHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 261 STVFICGM----------IEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 261 D~Ivs~~~----------l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+|++.-. +.+. +++..+++.+.++|+|||.++++...
T Consensus 227 D~Ii~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 227 DIILTDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp SEEEECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred eEEEECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 99999421 1222 35788999999999999997776543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=131.48 Aligned_cols=147 Identities=9% Similarity=0.011 Sum_probs=106.0
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
.+.++.+|||||||+|.++..++++ ++.+++++|+ +.+++.+++. .++++..+ |+.+ + ++ .
T Consensus 185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~-d~~~-~------~p--~ 246 (352)
T 1fp2_A 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGG-DMFT-S------IP--N 246 (352)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEEC-CTTT-C------CC--C
T ss_pred ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEec-cccC-C------CC--C
Confidence 3456789999999999999999987 5789999999 9998877642 35999999 9865 3 22 3
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhcccc---CceEEEEcCCCCCCCCC----Cchhhhhh--hccCCCCCCCHHHHH
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAE---NGLSCSTVPDQCYDEHS----LGPGFIKE--YIFPSGCLPSLRRVT 330 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~~i~~~~~~~~~~~----~~~~~i~~--yi~pgg~lp~~~~~~ 330 (381)
||+|++..+++|+++.....+++++.++||| ||++++........... ....+... ... ++...+..++.
T Consensus 247 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~g~~~t~~e~~ 325 (352)
T 1fp2_A 247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL-NGKERNEEEWK 325 (352)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGG-TCCCEEHHHHH
T ss_pred ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhc-cCCCCCHHHHH
Confidence 9999999999999876666999999999999 99987765332111100 00001110 112 25566788875
Q ss_pred HHHHhcCCcEEEEEEec
Q 047022 331 SAMTSSSRLCVEHLENI 347 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~ 347 (381)
+.+. ++||+++++...
T Consensus 326 ~ll~-~aGf~~~~~~~~ 341 (352)
T 1fp2_A 326 KLFI-EAGFQHYKISPL 341 (352)
T ss_dssp HHHH-HTTCCEEEEEEE
T ss_pred HHHH-HCCCCeeEEEec
Confidence 5554 599998877653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=125.51 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=83.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||||||+|.++..+++. ++.+|+++|+|+.+++.|+++. .++.+..+ |+.+++ +.+++||
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~-d~~~~~------~~~~~fD 150 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVA-SSHRLP------FSDTSMD 150 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEEC-CTTSCS------BCTTCEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEc-chhhCC------CCCCcee
Confidence 57889999999999999999987 4789999999999999998763 36899999 998876 4568999
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
+|++..+ ..+++++.++|||||++++..+...
T Consensus 151 ~v~~~~~---------~~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 151 AIIRIYA---------PCKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp EEEEESC---------CCCHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEeCC---------hhhHHHHHHhcCCCcEEEEEEcCHH
Confidence 9999754 2357889999999999988877643
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-13 Score=119.84 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=88.7
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
++++.+|||||||+|.+++.+++. +..+|+++|+++.+++.|++++..+|+.++|++..+ |..+... +..+|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~g-D~l~~~~------~~~~~ 91 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKG-NGLAVIE------KKDAI 91 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEEC-SGGGGCC------GGGCC
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEec-chhhccC------ccccc
Confidence 357899999999999999999997 245899999999999999999999999889999999 9877651 22359
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|+|++.++--. -...++....+.|+++|+++++.
T Consensus 92 D~IviagmGg~----lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 92 DTIVIAGMGGT----LIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp CEEEEEEECHH----HHHHHHHHTGGGGTTCCEEEEEE
T ss_pred cEEEEeCCchH----HHHHHHHHHHHHhCCCCEEEEEc
Confidence 99987665443 36788899999999999988764
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=123.74 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=91.3
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
..++.+|||||||+|.++..+ +.+++++|+|+. ++++..+ |+.+++ ++.++||
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~----------------~~~~~~~-d~~~~~------~~~~~fD 117 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSI----RNPVHCFDLASL----------------DPRVTVC-DMAQVP------LEDESVD 117 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS----------------STTEEES-CTTSCS------CCTTCEE
T ss_pred cCCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC----------------CceEEEe-ccccCC------CCCCCEe
Confidence 357789999999999998776 368999999987 4678889 998876 4568899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCV 341 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v 341 (381)
+|++..++++ .++..+++++.++|+|||.++++.+... .++..++.+.+. ++||++
T Consensus 118 ~v~~~~~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~--------------------~~~~~~~~~~l~-~~Gf~~ 173 (215)
T 2zfu_A 118 VAVFCLSLMG---TNIRDFLEEANRVLKPGGLLKVAEVSSR--------------------FEDVRTFLRAVT-KLGFKI 173 (215)
T ss_dssp EEEEESCCCS---SCHHHHHHHHHHHEEEEEEEEEEECGGG--------------------CSCHHHHHHHHH-HTTEEE
T ss_pred EEEEehhccc---cCHHHHHHHHHHhCCCCeEEEEEEcCCC--------------------CCCHHHHHHHHH-HCCCEE
Confidence 9999999953 5689999999999999999888753311 126667755555 589999
Q ss_pred EEEEecc
Q 047022 342 EHLENIE 348 (381)
Q Consensus 342 ~~~~~~~ 348 (381)
+......
T Consensus 174 ~~~~~~~ 180 (215)
T 2zfu_A 174 VSKDLTN 180 (215)
T ss_dssp EEEECCS
T ss_pred EEEecCC
Confidence 8765443
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=127.61 Aligned_cols=118 Identities=10% Similarity=0.084 Sum_probs=93.7
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...+.++++.+|||+|||+|..+.++++.. +.+|+++|+|+.+++.+++++...|+. ++++..+ |+.+++
T Consensus 109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~-D~~~~~---- 182 (315)
T 1ixk_A 109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHS-SSLHIG---- 182 (315)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESS-CGGGGG----
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEEC-Chhhcc----
Confidence 44556678899999999999999999999863 479999999999999999999998885 7999999 998875
Q ss_pred cccCCCcccEEEEc------hhhHhhCh--------------hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 253 TELFLGNFSTVFIC------GMIEAVGH--------------DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~------~~l~~~~~--------------~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
...++||+|++. +++.+.++ .....+++++.++|||||++++++..
T Consensus 183 --~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 183 --ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp --GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred --cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 134689999983 22322211 11258899999999999998887654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-13 Score=123.78 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=88.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-----
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-T-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL----- 255 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~----- 255 (381)
.++.+|||||||+|..++.+++. + +.+|+++|+|+.+++.|++++...++.+++++..+ |+.+..+ .+
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~g-da~~~l~----~l~~~~~ 152 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG-PALPVLD----EMIKDEK 152 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHH----HHHHSGG
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC-CHHHHHH----HHHhccC
Confidence 35679999999999999999987 3 68999999999999999999999998778999999 9876421 01
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..++||+|++... ..++..+++.+.++|||||++++..
T Consensus 153 ~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 153 NHGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp GTTCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CCCCEEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 1478999998743 2457899999999999999988753
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=125.71 Aligned_cols=116 Identities=9% Similarity=0.063 Sum_probs=91.3
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.+...++.+|||+|||+|.+++.+++.++.+|+++|+|+.+++.|++++...++.+++++..+ |+.+..
T Consensus 114 ~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~-D~~~~~------ 186 (284)
T 1nv8_A 114 LALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG-EFLEPF------ 186 (284)
T ss_dssp HHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES-STTGGG------
T ss_pred HHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC-cchhhc------
Confidence 3444443346679999999999999999986578999999999999999999999998878999999 987632
Q ss_pred cCCCcc---cEEEEch------------hhHhhCh------hcHHHHHHHHH-hccccCceEEEEcCC
Q 047022 255 LFLGNF---STVFICG------------MIEAVGH------DYMEELFSCCE-SLLAENGLSCSTVPD 300 (381)
Q Consensus 255 ~~~~~f---D~Ivs~~------------~l~~~~~------~~~~~~l~~~~-~~LkpgG~~~i~~~~ 300 (381)
. ++| |+|+++- +. |-+. .+...+++++. +.|+|||.+++..+.
T Consensus 187 -~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 187 -K-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp -G-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred -c-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 1 578 9999961 11 2211 12237899999 999999999987654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-13 Score=126.92 Aligned_cols=118 Identities=18% Similarity=0.154 Sum_probs=97.6
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..++..+...++.+|||+|||+|.+++.++... +.+++|+|+++.+++.|++++...|+. ++++.++ |+.+++
T Consensus 193 ~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~-D~~~~~--- 267 (354)
T 3tma_A 193 QALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRA-DARHLP--- 267 (354)
T ss_dssp HHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEEC-CGGGGG---
T ss_pred HHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeC-ChhhCc---
Confidence 356677778889999999999999999999863 489999999999999999999999987 8999999 999886
Q ss_pred ccccCCCcccEEEEchhh-------HhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 MTELFLGNFSTVFICGMI-------EAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l-------~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
...+.||+|+++-.+ .++. ..+..+++++.++|||||.+++.+++
T Consensus 268 ---~~~~~~D~Ii~npPyg~r~~~~~~~~-~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 268 ---RFFPEVDRILANPPHGLRLGRKEGLF-HLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp ---GTCCCCSEEEECCCSCC----CHHHH-HHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred ---cccCCCCEEEECCCCcCccCCcccHH-HHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 234679999995322 1111 23578999999999999998887764
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-13 Score=131.51 Aligned_cols=103 Identities=21% Similarity=0.282 Sum_probs=86.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+|++|||||||+|.+++.+|+. | .+|+++|.|+ +++.|++.++.+++.++|+++.+ +.+++. .+++||
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~-~~~~~~-------lpe~~D 151 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPG-PVETVE-------LPEQVD 151 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEES-CTTTCC-------CSSCEE
T ss_pred cCCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEee-eeeeec-------CCcccc
Confidence 47889999999999999998885 6 4899999996 88999999999999999999999 999887 337899
Q ss_pred EEEEchhhHhhCh-hcHHHHHHHHHhccccCceEE
Q 047022 262 TVFICGMIEAVGH-DYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 262 ~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~ 295 (381)
+|||-.+-..+.. ..+..++....++|||||.++
T Consensus 152 vivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 152 AIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp EEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred EEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 9999544333322 357889999999999999954
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-13 Score=123.65 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=84.7
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH------cCCCCCeEEEEecCccc-cCcCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKE------AGLQDTSDYIFVITVNC-LKPTNMT 253 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~------~gl~~~i~~~~~~d~~~-l~~~~l~ 253 (381)
..++.+|||||||+|.++..+++. ++..|+|+|+|+.+++.|++++.. .++ .++++..+ |+.+ ++.
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~-d~~~~l~~---- 117 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRS-NAMKHLPN---- 117 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEEC-CTTTCHHH----
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEEC-cHHHhhhh----
Confidence 346679999999999999999987 578999999999999999988764 344 48999999 9876 320
Q ss_pred ccCCCcccEEEEchhhHhhChh------cHHHHHHHHHhccccCceEEEEcCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+..++||.|++...-.+.... ....+++++.++|||||.+++.+..
T Consensus 118 ~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 118 FFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp HCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 1345889999876432221100 0147999999999999999887654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=7e-13 Score=123.82 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=84.2
Q ss_pred HHHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE-EecCccccC
Q 047022 171 RKVSVLIEKVKLV-KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYI-FVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~-~~~d~~~l~ 248 (381)
.++..+++.+.+. ++.+|||||||+|.++..+++....+|+|+|+|++|++.+.+.- .++... .. |++.++
T Consensus 71 ~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~-ni~~l~ 143 (291)
T 3hp7_A 71 LKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQY-NFRYAE 143 (291)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSC-CGGGCC
T ss_pred HHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceeccc-Cceecc
Confidence 4667778888765 57799999999999999999863359999999999998854321 234332 34 666555
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++. ++..+||+|++..++.++ ..++.++.++|||||.+++.+
T Consensus 144 ~~~---l~~~~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv 185 (291)
T 3hp7_A 144 PVD---FTEGLPSFASIDVSFISL-----NLILPALAKILVDGGQVVALV 185 (291)
T ss_dssp GGG---CTTCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE
T ss_pred hhh---CCCCCCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE
Confidence 321 233459999998777655 778999999999999977753
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=131.88 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=94.7
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+++.+...++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.+++++...++. +++..+ |..+..
T Consensus 187 ~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~-d~~~~~----- 258 (343)
T 2pjd_A 187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFAS-NVFSEV----- 258 (343)
T ss_dssp HHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEEC-STTTTC-----
T ss_pred HHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEc-cccccc-----
Confidence 5566675566789999999999999999987 4469999999999999999999888764 677888 876543
Q ss_pred ccCCCcccEEEEchhhHh---hChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 254 ELFLGNFSTVFICGMIEA---VGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~---~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.++||+|+++..+++ ........+++++.++|||||.+++..+.
T Consensus 259 ---~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 259 ---KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp ---CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred ---cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 378999999987764 22245789999999999999998887654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-14 Score=126.95 Aligned_cols=109 Identities=17% Similarity=0.077 Sum_probs=89.1
Q ss_pred CCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.+|||||||+|..++.+++. .+++|+++|+++++++.|++++...++.+++++..+ |+.+..+........++||
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-da~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG-PALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEES-CHHHHHHHHHHHHCSSCEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHhhccCCCCEe
Confidence 5679999999999999999986 268999999999999999999999999889999999 9876531000000037899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|++... ..++..+++++.++|||||++++..
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 9998754 3457889999999999999988853
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-13 Score=118.43 Aligned_cols=103 Identities=16% Similarity=0.076 Sum_probs=86.9
Q ss_pred CCCEEEEecCCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-T-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.+|||||||+|..+..+++. + +.+|+++|+|+.+++.|++++...++.+++++..+ |..+..+ ...+ ||
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~-----~~~~-fD 128 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG-DPLGIAA-----GQRD-ID 128 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEES-CHHHHHT-----TCCS-EE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEe-cHHHHhc-----cCCC-CC
Confidence 5679999999999999999987 3 68999999999999999999998888778999999 9876421 1235 99
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|++... ..+...+++++.++|||||++++..
T Consensus 129 ~v~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 129 ILFMDCD-----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEEEETT-----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred EEEEcCC-----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 9998732 2467899999999999999988753
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=123.21 Aligned_cols=170 Identities=8% Similarity=0.047 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHcCCC-CCCEEEEecCCc--hHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe
Q 047022 167 VGQIRKVSVLIEKVKLV-KGQEVLEIGCGW--GTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241 (381)
Q Consensus 167 ~aq~~~~~~l~~~l~~~-~~~~VLDiGcG~--G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~ 241 (381)
.+.+..+.+.++.+... ...+|||||||+ +..+..++++ ++++|+++|.|+.|++.|++++...+ ..+++++..
T Consensus 60 ~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~a 138 (277)
T 3giw_A 60 RANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEA 138 (277)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEEC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEe
Confidence 34456666677766532 346899999997 4455555554 78999999999999999999886432 247999999
Q ss_pred cCccccCcCCcc-ccCCCccc-----EEEEchhhHhhChhc-HHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhh
Q 047022 242 ITVNCLKPTNMT-ELFLGNFS-----TVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIK 314 (381)
Q Consensus 242 ~d~~~l~~~~l~-~~~~~~fD-----~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~ 314 (381)
|+++.... +. ....+.|| .|+++.++||+++.+ +..+++++.+.|+|||+++++......... .......
T Consensus 139 -D~~~~~~~-l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~-~~~~~~~ 215 (277)
T 3giw_A 139 -DMLDPASI-LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQ-EVGRVAR 215 (277)
T ss_dssp -CTTCHHHH-HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHH-HHHHHHH
T ss_pred -cccChhhh-hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHH-HHHHHHH
Confidence 99875200 00 00013455 688999999998754 689999999999999999888654332110 0112222
Q ss_pred hhccCC--CCCCCHHHHHHHHHhcCCcEEEE
Q 047022 315 EYIFPS--GCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 315 ~yi~pg--g~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
.|-..+ ..+.+.+++ ..+. .||++++
T Consensus 216 ~~~~~g~p~~~rs~~ei-~~~f--~Glelve 243 (277)
T 3giw_A 216 EYAARNMPMRLRTHAEA-EEFF--EGLELVE 243 (277)
T ss_dssp HHHHTTCCCCCCCHHHH-HHTT--TTSEECT
T ss_pred HHHhcCCCCccCCHHHH-HHHh--CCCcccC
Confidence 232211 245577777 4444 3999753
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-13 Score=120.79 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=91.1
Q ss_pred HHHHHc--CCCCCCEEEEecCCchHHHHHHHHhcC------CEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEec
Q 047022 175 VLIEKV--KLVKGQEVLEIGCGWGTLAIEIVRQTG------CKYTGITLSELQLKYAEIKVKEAGL----QDTSDYIFVI 242 (381)
Q Consensus 175 ~l~~~l--~~~~~~~VLDiGcG~G~~~~~la~~~~------~~v~gvDis~~~~~~a~~~~~~~gl----~~~i~~~~~~ 242 (381)
.+++.+ .++++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...++ .+++++..+
T Consensus 69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~- 147 (227)
T 2pbf_A 69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK- 147 (227)
T ss_dssp HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC-
T ss_pred HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC-
Confidence 445555 467899999999999999999998643 5999999999999999999988773 358999999
Q ss_pred CccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 243 TVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 243 d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|..+..+.. ....++||+|++...++++ ++.+.++|||||++++.++.
T Consensus 148 d~~~~~~~~--~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 148 NIYQVNEEE--KKELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CGGGCCHHH--HHHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred ChHhccccc--CccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 987642000 0023689999999887765 36788999999998888764
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-13 Score=123.46 Aligned_cols=111 Identities=15% Similarity=0.116 Sum_probs=89.0
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC--------C
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT--------N 251 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~--------~ 251 (381)
..++.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++.+++++..+ |..+..+. .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG-SALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHCSSCCG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC-CHHHHHHHHHhhccccc
Confidence 3467899999999999999999873 68999999999999999999998888767999999 87653110 0
Q ss_pred c-cccCC--CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 252 M-TELFL--GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l-~~~~~--~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+ ..++. ++||+|++.... .++..+++.+.++|+|||++++..
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 0 01222 789999998543 345789999999999999988864
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=122.33 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=90.9
Q ss_pred HHHHHHc--CCCCCCEEEEecCCchHHHHHHHHhcC-------CEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEE
Q 047022 174 SVLIEKV--KLVKGQEVLEIGCGWGTLAIEIVRQTG-------CKYTGITLSELQLKYAEIKVKEAGL----QDTSDYIF 240 (381)
Q Consensus 174 ~~l~~~l--~~~~~~~VLDiGcG~G~~~~~la~~~~-------~~v~gvDis~~~~~~a~~~~~~~gl----~~~i~~~~ 240 (381)
..+++.+ .++++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...++ ..++++..
T Consensus 72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 151 (227)
T 1r18_A 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 151 (227)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 3556666 467899999999999999999998643 5999999999999999999876551 24799999
Q ss_pred ecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 241 VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 241 ~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+ |..+..+ ..++||+|++...++++. +++.+.|||||++++.+..
T Consensus 152 ~-d~~~~~~------~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 152 G-DGRKGYP------PNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp S-CGGGCCG------GGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred C-CcccCCC------cCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence 9 9876321 227899999998888774 5789999999999988764
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-13 Score=124.97 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=86.5
Q ss_pred CCCEEEEecCCchH----HHHHHHHh-c----CCEEEEEcCCHHHHHHHHHHHHH-----------------------cC
Q 047022 184 KGQEVLEIGCGWGT----LAIEIVRQ-T----GCKYTGITLSELQLKYAEIKVKE-----------------------AG 231 (381)
Q Consensus 184 ~~~~VLDiGcG~G~----~~~~la~~-~----~~~v~gvDis~~~~~~a~~~~~~-----------------------~g 231 (381)
++.+|||+|||+|. +++.+++. . +.+|+|+|+|+.+++.|++.+-. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 66666665 2 36999999999999999986310 00
Q ss_pred -------CCCCeEEEEecCccccCcCCccccC-CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 232 -------LQDTSDYIFVITVNCLKPTNMTELF-LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 232 -------l~~~i~~~~~~d~~~l~~~~l~~~~-~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+..+|+|... |+.+.+ ++ .++||+|+|.+++.|+.++....+++++++.|+|||.+++..
T Consensus 185 ~~~v~~~lr~~V~F~~~-dl~~~~------~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSV-NLLEKQ------YNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEEC-CTTCSS------CCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEec-ccCCCC------CCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 1136999999 988754 22 478999999999999987777899999999999999998854
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.5e-13 Score=119.82 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=88.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc--ccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-T-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT--ELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~--~~~~~ 258 (381)
.++.+|||||||+|..+..+++. + +.+++++|+++.+++.|++++...++.+++++..+ |..+..+. +. ....+
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-da~~~l~~-l~~~~~~~~ 146 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIES-DAMLALDN-LLQGQESEG 146 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHH-HHHSTTCTT
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHH-HHhccCCCC
Confidence 35679999999999999999987 3 68999999999999999999999998778999999 98764210 00 00147
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+||+|++... ..++..+++.+.++|+|||++++..
T Consensus 147 ~fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 147 SYDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp CEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CcCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 8999998732 3467899999999999999988753
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=123.86 Aligned_cols=115 Identities=15% Similarity=0.118 Sum_probs=85.5
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH---cCCCCCeEEEEecCccccCcCCccccC
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKE---AGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~---~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
..+++.+|||||||+|.++..+++. ...+|+++|+|+.+++.|++++.. .....++++..+ |+.+.... ..
T Consensus 92 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~-D~~~~~~~----~~ 166 (304)
T 3bwc_A 92 SHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVG-DGLAFVRQ----TP 166 (304)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-CHHHHHHS----SC
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEEC-cHHHHHHh----cc
Confidence 3456789999999999999999987 357999999999999999998742 122358999999 98776410 12
Q ss_pred CCcccEEEEchhhHhhChhcH--HHHHHHHHhccccCceEEEEcCC
Q 047022 257 LGNFSTVFICGMIEAVGHDYM--EELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~--~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.++||+|++.....+.+.... ..+++++.++|||||++++....
T Consensus 167 ~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 167 DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp TTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 478999999765544322222 68999999999999998887543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=120.42 Aligned_cols=106 Identities=10% Similarity=0.044 Sum_probs=89.0
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
++.+. +++|.+|||+|||+|.+++.+|++..++|+++|+|+.+++.++++++.+++.+++++..+ |.+++.
T Consensus 118 ri~~~--~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~-D~~~~~------ 188 (278)
T 3k6r_A 118 RMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM-DNRDFP------ 188 (278)
T ss_dssp HHHHH--CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-CTTTCC------
T ss_pred HHHHh--cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeC-cHHHhc------
Confidence 34444 358999999999999999999987457999999999999999999999999999999999 999887
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+.||.|+... + .....++..+.++|||||.+.+
T Consensus 189 -~~~~~D~Vi~~~-----p-~~~~~~l~~a~~~lk~gG~ih~ 223 (278)
T 3k6r_A 189 -GENIADRILMGY-----V-VRTHEFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp -CCSCEEEEEECC-----C-SSGGGGHHHHHHHEEEEEEEEE
T ss_pred -cccCCCEEEECC-----C-CcHHHHHHHHHHHcCCCCEEEE
Confidence 457899999862 2 2235677788899999999543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.3e-13 Score=127.15 Aligned_cols=153 Identities=7% Similarity=0.023 Sum_probs=109.9
Q ss_pred HHHHHc--CCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 175 VLIEKV--KLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 175 ~l~~~l--~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
.+++.+ .+.++.+|||||||+|.++..++++ ++.+++++|+ +.+++.+++ . .++++..+ |+.+ +
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~-d~~~-~--- 248 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGG-DMFK-S--- 248 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEEC-CTTT-C---
T ss_pred HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeC-ccCC-C---
Confidence 345555 3456789999999999999999987 5789999999 788876654 2 36999999 9877 4
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhcccc---CceEEEEcCCCCCCCCC-------CchhhhhhhccCCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAE---NGLSCSTVPDQCYDEHS-------LGPGFIKEYIFPSG 321 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~~i~~~~~~~~~~~-------~~~~~i~~yi~pgg 321 (381)
++ +||+|++..+++|+++.....+++++.++||| ||+++|........... ...++.. ...+++
T Consensus 249 ---~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~g 322 (358)
T 1zg3_A 249 ---IP--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVM-LTMFLG 322 (358)
T ss_dssp ---CC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHH-HHHHSC
T ss_pred ---CC--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHH-hccCCC
Confidence 22 49999999999999876666999999999999 99987754321111000 0011111 113456
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 322 CLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 322 ~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
...+..++.+.+. ++||+++++...
T Consensus 323 ~~~t~~e~~~ll~-~aGf~~~~~~~~ 347 (358)
T 1zg3_A 323 KERTKQEWEKLIY-DAGFSSYKITPI 347 (358)
T ss_dssp CCEEHHHHHHHHH-HTTCCEEEEEEE
T ss_pred CCCCHHHHHHHHH-HcCCCeeEEEec
Confidence 7778888865555 599998887653
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=118.93 Aligned_cols=107 Identities=21% Similarity=0.352 Sum_probs=85.6
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc--------CCCCCeEEEEecCccc-cCcCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEA--------GLQDTSDYIFVITVNC-LKPTN 251 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~--------gl~~~i~~~~~~d~~~-l~~~~ 251 (381)
++++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.+++++... ++. ++++..+ |+.+ ++.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~-D~~~~l~~-- 122 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRG-NAMKFLPN-- 122 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEEC-CTTSCGGG--
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEec-cHHHHHHH--
Confidence 357789999999999999999987 4579999999999999999988765 664 7999999 9876 331
Q ss_pred ccccCCCcccEEEEchhhHhhChhcH-----------HHHHHHHHhccccCceEEEEcC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYM-----------EELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~-----------~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.+..+++|.|+.. +++... ..+++++.++|+|||.+++.+.
T Consensus 123 --~~~~~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 123 --FFEKGQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp --TSCTTCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred --hccccccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 1346789999865 232211 5899999999999999888653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=7.9e-13 Score=126.54 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=90.0
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcC----------CCCCeEEEE
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAG----------LQDTSDYIF 240 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~g----------l~~~i~~~~ 240 (381)
...++..+.+.++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|++++...+ +.+++++..
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 44667777888999999999999999999998633 799999999999999999987632 335899999
Q ss_pred ecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 241 VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 241 ~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+ |+.+... .+..++||+|++. ++ .+..+++++.++|||||.+++..+.
T Consensus 174 ~-d~~~~~~----~~~~~~fD~V~~~-----~~--~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 174 K-DISGATE----DIKSLTFDAVALD-----ML--NPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp S-CTTCCC-----------EEEEEEC-----SS--STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred C-ChHHccc----ccCCCCeeEEEEC-----CC--CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9 9887631 1345689999985 22 2344789999999999998887654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=122.21 Aligned_cols=121 Identities=11% Similarity=0.061 Sum_probs=93.1
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
...+.++++.+|||+|||+|..+..+++. .+ .+|+++|+|+.+++.+++++...|+. ++++..+ |+.+++.. + .
T Consensus 76 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~-D~~~~~~~-~-~ 151 (274)
T 3ajd_A 76 PIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINA-DMRKYKDY-L-L 151 (274)
T ss_dssp HHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEES-CHHHHHHH-H-H
T ss_pred HHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeC-ChHhcchh-h-h
Confidence 44566789999999999999999999986 34 79999999999999999999998886 8999999 98876510 0 0
Q ss_pred cCCCcccEEEEc------hhhHh--------hC--hhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 255 LFLGNFSTVFIC------GMIEA--------VG--HDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 255 ~~~~~fD~Ivs~------~~l~~--------~~--~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
...++||+|++. +++.+ +. ......+++.+.++|||||++++++...
T Consensus 152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 014789999986 22221 10 0245789999999999999988877543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.2e-12 Score=110.25 Aligned_cols=106 Identities=8% Similarity=0.028 Sum_probs=85.0
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
+......++.+|||+|||+|.++..+++....+|+|+|+|+.+++.+++++...++ ++++..+ |+.+++
T Consensus 42 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~-d~~~~~-------- 110 (207)
T 1wy7_A 42 AYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIG-DVSEFN-------- 110 (207)
T ss_dssp HHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEES-CGGGCC--------
T ss_pred HHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEEC-chHHcC--------
Confidence 33344567889999999999999999986334899999999999999999887776 6999999 998876
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
++||+|+++..+++........+++.+.++| ||.+++
T Consensus 111 -~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 111 -SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp -CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred -CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence 5899999987766554334567888899888 554433
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.8e-13 Score=118.46 Aligned_cols=106 Identities=12% Similarity=0.167 Sum_probs=88.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC----
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-T-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF---- 256 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~---- 256 (381)
.++.+|||||||+|..+..+++. + +.+|+++|+++.+++.|++++...++.+++++..+ |+.+..+. +.
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~~~----~~~~~~ 142 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK-PALETLDE----LLAAGE 142 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHH----HHHTTC
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEc-CHHHHHHH----HHhcCC
Confidence 46789999999999999999986 2 67999999999999999999999998789999999 98654210 11
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.++||+|++... ..++..+++.+.++|+|||.+++..
T Consensus 143 ~~~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 143 AGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp TTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 168999999643 3457889999999999999988753
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.4e-13 Score=114.11 Aligned_cols=128 Identities=13% Similarity=0.037 Sum_probs=93.4
Q ss_pred HHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 178 EKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
..+.+++|.+|||+|||. +++|+|+.|++.|+++.. .++++..+ |+.+++.. .+++
T Consensus 6 ~~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~-d~~~~~~~---~~~~ 61 (176)
T 2ld4_A 6 ADFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG-----NEGRVSVE-NIKQLLQS---AHKE 61 (176)
T ss_dssp TTTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT-----TTSEEEEE-EGGGGGGG---CCCS
T ss_pred hccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc-----cCcEEEEe-chhcCccc---cCCC
Confidence 345678999999999996 239999999999998853 25899999 99887610 0156
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcC
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSS 337 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~ 337 (381)
++||+|++..+++|+. .+...++++++++|||||++++..+..... . +.....+..++.+.+. ++
T Consensus 62 ~~fD~V~~~~~l~~~~-~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~---~----------~~~~~~~~~~~~~~l~-~a 126 (176)
T 2ld4_A 62 SSFDIILSGLVPGSTT-LHSAEILAEIARILRPGGCLFLKEPVETAV---D----------NNSKVKTASKLCSALT-LS 126 (176)
T ss_dssp SCEEEEEECCSTTCCC-CCCHHHHHHHHHHEEEEEEEEEEEEEESSS---C----------SSSSSCCHHHHHHHHH-HT
T ss_pred CCEeEEEECChhhhcc-cCHHHHHHHHHHHCCCCEEEEEEccccccc---c----------cccccCCHHHHHHHHH-HC
Confidence 8999999999999982 246899999999999999988864421110 0 0112345677766665 48
Q ss_pred CcEEEEEEe
Q 047022 338 RLCVEHLEN 346 (381)
Q Consensus 338 Gf~v~~~~~ 346 (381)
|| +. +..
T Consensus 127 Gf-i~-~~~ 133 (176)
T 2ld4_A 127 GL-VE-VKE 133 (176)
T ss_dssp TC-EE-EEE
T ss_pred CC-cE-eec
Confidence 99 55 444
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.2e-13 Score=119.44 Aligned_cols=107 Identities=17% Similarity=0.124 Sum_probs=87.4
Q ss_pred CCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC--Cc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL--GN 259 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~--~~ 259 (381)
++.+|||||||+|..+..+++.. +++|+++|+|+.+++.|++++...++.+++++..+ |+.+..+. + .... ++
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~l~~-l-~~~~~~~~ 148 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLG-PALATLEQ-L-TQGKPLPE 148 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHHHH-H-HTSSSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHH-H-HhcCCCCC
Confidence 56799999999999999999873 67999999999999999999998888778999999 87543100 0 0112 68
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
||+|++... ..++..+++++.++|+|||++++..
T Consensus 149 fD~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 149 FDLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred cCEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 999998743 2457889999999999999988864
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=119.93 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=89.0
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
.+.++.+|||+|||+|.+++.+++. .+++|+++|+|+.+++.|++++..+++. ++.+..+ |+.+.+ ..++
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~-d~~~~~-------~~~~ 186 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILA-DNRDVE-------LKDV 186 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEES-CGGGCC-------CTTC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEEC-ChHHcC-------ccCC
Confidence 3568899999999999999999987 3569999999999999999999998886 7899999 998874 2468
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
||+|++.... ....++..+.+.|+|||+++++..
T Consensus 187 ~D~Vi~d~p~------~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 187 ADRVIMGYVH------KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp EEEEEECCCS------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEEECCcc------cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9999997432 457789999999999999887653
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.1e-15 Score=135.59 Aligned_cols=134 Identities=14% Similarity=0.132 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
..++.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..+++++..+ |+.+++
T Consensus 16 ~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~-D~~~~~-- 88 (245)
T 1yub_A 16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQ-DILQFQ-- 88 (245)
T ss_dssp TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCS-CCTTTT--
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc---cCCceEEEEC-ChhhcC--
Confidence 34557888888889999999999999999999986 7899999999999999887764 2357999999 998876
Q ss_pred CccccC-CCcccEEEEc-------hh----hHhhChhcHHHHH----HHHHhccccCceEEEEcCCCCCCCCCCchhhhh
Q 047022 251 NMTELF-LGNFSTVFIC-------GM----IEAVGHDYMEELF----SCCESLLAENGLSCSTVPDQCYDEHSLGPGFIK 314 (381)
Q Consensus 251 ~l~~~~-~~~fD~Ivs~-------~~----l~~~~~~~~~~~l----~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~ 314 (381)
+. .++| .|+++ .+ ++|. .....++ +.+.++|+|||.+++..+... ...+.
T Consensus 89 ----~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~--~~~~~~lm~q~e~a~rll~~~G~l~v~~~~~~-------~~~~~ 154 (245)
T 1yub_A 89 ----FPNKQRY-KIVGNIPYHLSTQIIKKVVFES--RASDIYLIVEEGFYKRTLDIHRTLGLLLHTQV-------SIQQL 154 (245)
T ss_dssp ----CCCSSEE-EEEEECCSSSCHHHHHHHHHHC--CCEEEEEEEESSHHHHHHCGGGSHHHHTTTTB-------CCCEE
T ss_pred ----cccCCCc-EEEEeCCccccHHHHHHHHhCC--CCCeEEEEeeHHHHHHHhCCCCchhhhheehe-------eEEEE
Confidence 23 2678 66664 12 2232 1233445 779999999999776654321 11233
Q ss_pred hhccCCCCCCC
Q 047022 315 EYIFPSGCLPS 325 (381)
Q Consensus 315 ~yi~pgg~lp~ 325 (381)
.++.|++..|.
T Consensus 155 ~~v~~~~f~P~ 165 (245)
T 1yub_A 155 LKLPAECFHPK 165 (245)
T ss_dssp EEECCTTSBSS
T ss_pred EEECchhccCC
Confidence 45666666665
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.8e-14 Score=127.57 Aligned_cols=152 Identities=15% Similarity=0.170 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLV-KGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.++..+++.+.+. ++.+|||||||+|.++..+++. + .+|+|+|+|++|++.++++.. ++......++..+.
T Consensus 23 ~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~ 95 (232)
T 3opn_A 23 LKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAV 95 (232)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCC
T ss_pred HHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeC
Confidence 3566777777765 4679999999999999999997 6 499999999999998776532 22221110222222
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCC-----
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCL----- 323 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~l----- 323 (381)
... +....||.+.+..++.++ ..+++++.++|||||.+++.+ .+.+.. .. ..+..+|.+
T Consensus 96 ~~~---~~~~~~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~-~p~~e~---~~----~~~~~~G~~~d~~~ 159 (232)
T 3opn_A 96 LAD---FEQGRPSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI-KPQFEA---GR----EQVGKNGIIRDPKV 159 (232)
T ss_dssp GGG---CCSCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE-CHHHHS---CH----HHHC-CCCCCCHHH
T ss_pred HhH---cCcCCCCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE-Cccccc---CH----HHhCcCCeecCcch
Confidence 110 111124544444333333 678999999999999987754 111111 01 111112221
Q ss_pred --CCHHHHHHHHHhcCCcEEEEEEe
Q 047022 324 --PSLRRVTSAMTSSSRLCVEHLEN 346 (381)
Q Consensus 324 --p~~~~~~~~l~~~~Gf~v~~~~~ 346 (381)
.+..++.+.+. ++||.+..++.
T Consensus 160 ~~~~~~~l~~~l~-~aGf~v~~~~~ 183 (232)
T 3opn_A 160 HQMTIEKVLKTAT-QLGFSVKGLTF 183 (232)
T ss_dssp HHHHHHHHHHHHH-HHTEEEEEEEE
T ss_pred hHHHHHHHHHHHH-HCCCEEEEEEE
Confidence 13456655554 58999887754
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=119.18 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=79.2
Q ss_pred CCCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc---CcCCcccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL---KPTNMTEL 255 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l---~~~~l~~~ 255 (381)
++.+|||||||+|..+..+++. ++++|+++|+|+.+++.|+ ++.++++++.+ |..+. + ..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~g-D~~~~~~l~-----~~ 148 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQG-DCSDLTTFE-----HL 148 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEEC-CSSCSGGGG-----GG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEEC-cchhHHHHH-----hh
Confidence 4679999999999999999885 3789999999999988886 22358999999 99874 3 11
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHh-ccccCceEEEEc
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCES-LLAENGLSCSTV 298 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~-~LkpgG~~~i~~ 298 (381)
...+||+|++... | .++..+++++.+ +|||||++++..
T Consensus 149 ~~~~fD~I~~d~~--~---~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 149 REMAHPLIFIDNA--H---ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SSSCSSEEEEESS--C---SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred ccCCCCEEEECCc--h---HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 2247999998654 3 257889999997 999999998864
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-12 Score=110.78 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=85.7
Q ss_pred HHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 172 KVSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 172 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
++..+++.+. ++++.+|||+|||+|.++..+++.. +.+++++|+|+ +++. .++++..+ |..+.+
T Consensus 9 ~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~-d~~~~~ 75 (180)
T 1ej0_A 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQG-DFRDEL 75 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEES-CTTSHH
T ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEc-ccccch
Confidence 3445666655 5788999999999999999999873 58999999999 6532 47999999 987652
Q ss_pred cC-Ccc-ccCCCcccEEEEchhhHhhChhc---------HHHHHHHHHhccccCceEEEEcCC
Q 047022 249 PT-NMT-ELFLGNFSTVFICGMIEAVGHDY---------MEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 249 ~~-~l~-~~~~~~fD~Ivs~~~l~~~~~~~---------~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.. .+. .+..++||+|++...+++.+... ...+++++.++|+|||.++++.+.
T Consensus 76 ~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 76 VMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 00 000 02347899999987766654321 168899999999999998887654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-11 Score=118.37 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=104.8
Q ss_pred hhhhhcCCCcccccccccCCC---CceeecccC-CCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh
Q 047022 130 HVSRLYDPSNELFFFLFLDKS---MTYSCAIFK-SKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ 205 (381)
Q Consensus 130 ~i~~~Yd~~~~~~y~~~l~~~---~~ys~~~~~-~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~ 205 (381)
++.-++++.++. +...++.. ..+..+|-. .....+.+...+ .++..+ ..++.+|||+|||+|.+++.++..
T Consensus 164 ~~~i~~~~~~d~-~~~~ld~~g~~~l~~rgyr~~~~~a~l~~~la~---~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~ 238 (373)
T 3tm4_A 164 AVIFRAELIKDV-FFLGIDTTGDSSLHKRPWRVYDHPAHLKASIAN---AMIELA-ELDGGSVLDPMCGSGTILIELALR 238 (373)
T ss_dssp SEEEEEEEETTE-EEEEEESSCSSCTTCCTTCCSCCTTCCCHHHHH---HHHHHH-TCCSCCEEETTCTTCHHHHHHHHT
T ss_pred CeEEEEEEECCE-EEEEEEccCCcccccCCcccccCCCCccHHHHH---HHHHhh-cCCCCEEEEccCcCcHHHHHHHHh
Confidence 344455666666 66666543 122223211 122334333333 334444 678899999999999999999986
Q ss_pred cCC--EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhh-C-----hhcH
Q 047022 206 TGC--KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAV-G-----HDYM 277 (381)
Q Consensus 206 ~~~--~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~-~-----~~~~ 277 (381)
+. +|+|+|+|+.+++.|++++...|+.+++++.++ |+.+++ ...++||+|+++-.+..- + ..-+
T Consensus 239 -~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~-D~~~~~------~~~~~fD~Ii~npPyg~r~~~~~~~~~ly 310 (373)
T 3tm4_A 239 -RYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQG-DATQLS------QYVDSVDFAISNLPYGLKIGKKSMIPDLY 310 (373)
T ss_dssp -TCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEEC-CGGGGG------GTCSCEEEEEEECCCC------CCHHHHH
T ss_pred -CCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC-ChhhCC------cccCCcCEEEECCCCCcccCcchhHHHHH
Confidence 44 899999999999999999999999778999999 999887 345789999996432110 0 0124
Q ss_pred HHHHHHHHhccccCceEEEE
Q 047022 278 EELFSCCESLLAENGLSCST 297 (381)
Q Consensus 278 ~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+++.+.++| +|+.++++
T Consensus 311 ~~~~~~l~r~l-~g~~~~i~ 329 (373)
T 3tm4_A 311 MKFFNELAKVL-EKRGVFIT 329 (373)
T ss_dssp HHHHHHHHHHE-EEEEEEEE
T ss_pred HHHHHHHHHHc-CCeEEEEE
Confidence 77889999988 33334443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=122.20 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=88.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQD-TSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~-~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.++.+|||+|||+|.+++.+++. ++ +|+++|+|+.+++.|++++..+++.+ ++++..+ |+.+..+. + .....+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~-D~~~~l~~-~-~~~~~~f 286 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM-DVFDYFKY-A-RRHHLTY 286 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES-CHHHHHHH-H-HHTTCCE
T ss_pred cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC-CHHHHHHH-H-HHhCCCc
Confidence 57889999999999999999985 54 89999999999999999999999876 8999999 98763210 0 0013589
Q ss_pred cEEEEchhh-----HhhC--hhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 261 STVFICGMI-----EAVG--HDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 261 D~Ivs~~~l-----~~~~--~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
|+|++.-.. .+.. .+.+..+++.+.++|+|||.++++....
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999984211 1111 1345678889999999999998887543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-12 Score=117.40 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...++.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+|+.+++.++++....++.+++++..+ |+.+++
T Consensus 14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-D~~~~~- 90 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVG-DVLKTD- 90 (285)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEES-CTTTSC-
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc-ceeccc-
Confidence 355668888898889999999999999999999996 78999999999999999999876666568999999 998776
Q ss_pred CCccccCCCcccEEEEch
Q 047022 250 TNMTELFLGNFSTVFICG 267 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~ 267 (381)
+ .+||+|+++.
T Consensus 91 -----~--~~fD~vv~nl 101 (285)
T 1zq9_A 91 -----L--PFFDTCVANL 101 (285)
T ss_dssp -----C--CCCSEEEEEC
T ss_pred -----c--hhhcEEEEec
Confidence 2 3799999964
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.9e-12 Score=109.89 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=73.5
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++.. ++++..+ |+.+++ ++|
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~-d~~~~~---------~~~ 111 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVA-DVSEIS---------GKY 111 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEEC-CGGGCC---------CCE
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEEC-cHHHCC---------CCe
Confidence 456788999999999999999998623479999999999999998853 6899999 998865 689
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhcc
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLL 288 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~L 288 (381)
|+|+++..++|........+++++.+++
T Consensus 112 D~v~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 112 DTWIMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp EEEEECCCC-------CHHHHHHHHHHE
T ss_pred eEEEECCCchhccCchhHHHHHHHHHhc
Confidence 9999999988885433457888888888
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=118.28 Aligned_cols=116 Identities=13% Similarity=0.206 Sum_probs=87.4
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEecCccccCcCCcccc
Q 047022 180 VKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEA--GL-QDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~--gl-~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+...++.+|||||||+|..+..++++ ...+|+++|+|+.+++.|++++... ++ .+++++..+ |+.+..+ ..
T Consensus 116 ~~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~-D~~~~l~----~~ 190 (334)
T 1xj5_A 116 CSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG-DGVAFLK----NA 190 (334)
T ss_dssp TTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES-CHHHHHH----TS
T ss_pred hhCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEC-CHHHHHH----hc
Confidence 33456789999999999999999987 3579999999999999999987642 44 358999999 9876421 02
Q ss_pred CCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEEEcCC
Q 047022 256 FLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|++...-..-+.. ....+++.+.++|+|||++++....
T Consensus 191 ~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 191 AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 34789999985431111111 1478999999999999999886433
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=122.01 Aligned_cols=121 Identities=14% Similarity=0.108 Sum_probs=95.4
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...+.+.++.+|||+|||+|..+..+++. .+ .+|+++|+|+.+++.+++++...|+. ++++..+ |..++++.
T Consensus 250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~-D~~~~~~~-- 325 (450)
T 2yxl_A 250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVK-DARKAPEI-- 325 (450)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECS-CTTCCSSS--
T ss_pred HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEc-Chhhcchh--
Confidence 4455667889999999999999999999987 33 79999999999999999999998885 7999999 98876521
Q ss_pred cccCCCcccEEEE------chhhHhhChh-------c-------HHHHHHHHHhccccCceEEEEcCCC
Q 047022 253 TELFLGNFSTVFI------CGMIEAVGHD-------Y-------MEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 253 ~~~~~~~fD~Ivs------~~~l~~~~~~-------~-------~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+..++||+|++ .+++.+.++. + ...+++++.++|||||++++++...
T Consensus 326 --~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 326 --IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp --SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred --hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 23368999996 3344333221 1 1578999999999999988876543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-12 Score=109.69 Aligned_cols=115 Identities=18% Similarity=0.180 Sum_probs=82.0
Q ss_pred HHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhc---CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 172 KVSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQT---GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 172 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~---~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
++..+.+... ++++.+|||+|||+|.++..++++. +.+|+|+|+|+.+ .. .++++..+ |+.+.
T Consensus 9 kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~-d~~~~ 75 (201)
T 2plw_A 9 KLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQG-EIGKD 75 (201)
T ss_dssp HHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEEC-CTTTT
T ss_pred HHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEc-cccch
Confidence 4445666655 5788999999999999999999873 4799999999831 12 46899999 98765
Q ss_pred CcCCc------------------c-ccCCCcccEEEEchhhHhhChh--c-------HHHHHHHHHhccccCceEEEEcC
Q 047022 248 KPTNM------------------T-ELFLGNFSTVFICGMIEAVGHD--Y-------MEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 248 ~~~~l------------------~-~~~~~~fD~Ivs~~~l~~~~~~--~-------~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+...+ . .+..++||+|++..++++.+.. + ...+++++.++|||||.+++.+.
T Consensus 76 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 76 NMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp SSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 30000 0 0234689999998766543211 1 12478999999999999888653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=121.96 Aligned_cols=121 Identities=14% Similarity=0.135 Sum_probs=94.2
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...+.+.++.+|||+|||+|..+.++++.. ..+|+++|+|+.+++.+++++...|+. ++.+..+ |..++..
T Consensus 96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~-Da~~l~~--- 170 (456)
T 3m4x_A 96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNH-APAELVP--- 170 (456)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECC-CHHHHHH---
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeC-CHHHhhh---
Confidence 34556678899999999999999999999862 369999999999999999999999986 7999999 9877641
Q ss_pred cccCCCcccEEEEch------hhHhhCh--------------hcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 253 TELFLGNFSTVFICG------MIEAVGH--------------DYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
...++||+|++.. ++.+-++ .....+++.+.++|||||++++++....
T Consensus 171 --~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 171 --HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp --HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred --hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 1347899999732 2221110 1123789999999999999888776543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-12 Score=123.14 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCC------chHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEec
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCG------WGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG------~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~ 242 (381)
..++.++..+. .++.+||||||| +|..++.++++ ++++|+|+|+|+.|.. ..+++++.++
T Consensus 204 ~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~G- 271 (419)
T 3sso_A 204 PHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQG- 271 (419)
T ss_dssp HHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEEC-
T ss_pred HHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEe-
Confidence 34456666665 345799999999 77777777765 5789999999999721 2358999999
Q ss_pred CccccCcCCccccC------CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 243 TVNCLKPTNMTELF------LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 243 d~~~l~~~~l~~~~------~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
|..+++ +. .++||+|++..+ +++ .+...+|+++.++|||||++++...
T Consensus 272 Da~dlp------f~~~l~~~d~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 272 DQNDAE------FLDRIARRYGPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CTTCHH------HHHHHHHHHCCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred cccccc------hhhhhhcccCCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEec
Confidence 998875 33 488999999754 444 4678999999999999999888643
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.6e-12 Score=117.74 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=85.0
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEecCccccCcCCcccc
Q 047022 180 VKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKE--AGL-QDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~--~gl-~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+...++.+|||||||+|.++..++++ ...+|+++|+++.+++.|++++.. .++ .++++++.+ |..+..+ .
T Consensus 91 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~-Da~~~l~-----~ 164 (304)
T 2o07_A 91 CSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG-DGFEFMK-----Q 164 (304)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-CHHHHHH-----T
T ss_pred hhCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEEC-cHHHHHh-----h
Confidence 33456689999999999999999987 347999999999999999998765 344 468999999 9876321 1
Q ss_pred CCCcccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEcC
Q 047022 256 FLGNFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|++.......+. .....+++++.++|+|||++++...
T Consensus 165 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 165 NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 3478999998643221111 1235789999999999999888653
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=122.41 Aligned_cols=119 Identities=11% Similarity=0.119 Sum_probs=93.4
Q ss_pred HHHHcCCC--CCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 176 LIEKVKLV--KGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 176 l~~~l~~~--~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+...+.+. ++.+|||+|||+|..+.++++.. +..|+++|+|+.+++.+++++...|+. ++++..+ |..+++.
T Consensus 107 ~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~-D~~~~~~-- 182 (479)
T 2frx_A 107 PVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHF-DGRVFGA-- 182 (479)
T ss_dssp HHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECC-CSTTHHH--
T ss_pred HHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeC-CHHHhhh--
Confidence 34455666 89999999999999999999873 479999999999999999999998885 7999999 9887641
Q ss_pred ccccCCCcccEEEEc------hhhHhhCh--------------hcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 252 MTELFLGNFSTVFIC------GMIEAVGH--------------DYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~------~~l~~~~~--------------~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
...++||+|++. +++.+.++ .....+++++.++|||||++++++...
T Consensus 183 ---~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 183 ---AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp ---HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ---hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 134789999972 33333221 013478999999999999988877653
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=121.18 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=91.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+++.+|||+|||+|.+++.+++. ++ +|+++|+|+.+++.|++++..+++.+++++..+ |+.+..+.. ....++||
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~-d~~~~~~~~--~~~~~~fD 291 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG-SAFEEMEKL--QKKGEKFD 291 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHH--HHTTCCEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEC-CHHHHHHHH--HhhCCCCC
Confidence 47889999999999999999986 54 999999999999999999999988668999999 987653100 00146899
Q ss_pred EEEEch---------hhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 262 TVFICG---------MIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 262 ~Ivs~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
+|++.- ..++. ..+..++..+.++|+|||.++++.....
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGL--RAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHH--HHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred EEEECCCCCCCCHHHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 999942 22332 4578899999999999999887765543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.2e-12 Score=113.49 Aligned_cols=106 Identities=7% Similarity=0.104 Sum_probs=89.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+..+|||||||+|.++..++.. +..+|+++|+++.+++.+++++..+|+. .++.+. |+..-+ +.++||
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~-D~~~~~-------p~~~~D 200 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVA-DLLEDR-------LDEPAD 200 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEEC-CTTTSC-------CCSCCS
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEe-eecccC-------CCCCcc
Confidence 34679999999999999999877 6789999999999999999999998875 788888 887655 458899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+|++.-+++|+.++.....+ ++.+.|+|+|.+ |+.|.
T Consensus 201 vaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vv-VSfp~ 237 (281)
T 3lcv_B 201 VTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIV-VTFPT 237 (281)
T ss_dssp EEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEE-EEEEC
T ss_pred hHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEE-Eeccc
Confidence 99999999999765555677 899999999874 45554
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=122.82 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=93.6
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...+.+.++.+|||+|||+|..+.++++.. ..+|+++|+|+.+++.+++++...|+. +.+..+ |..+++.
T Consensus 92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~-Da~~l~~--- 165 (464)
T 3m6w_A 92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQA-PPRALAE--- 165 (464)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECS-CHHHHHH---
T ss_pred HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEEC-CHHHhhh---
Confidence 34455677899999999999999999999873 369999999999999999999999986 999999 9877641
Q ss_pred cccCCCcccEEEE------chhhHhhCh-------h-------cHHHHHHHHHhccccCceEEEEcCCC
Q 047022 253 TELFLGNFSTVFI------CGMIEAVGH-------D-------YMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 253 ~~~~~~~fD~Ivs------~~~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
...++||+|++ .+++.+-++ + ....+++.+.++|||||++++++...
T Consensus 166 --~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 166 --AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp --HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred --hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 13478999995 223322221 1 12678999999999999988877653
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=115.39 Aligned_cols=115 Identities=10% Similarity=0.127 Sum_probs=87.5
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEecCccccCcCCcccc
Q 047022 180 VKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAG--L-QDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~g--l-~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+...++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++...+ + .+++++..+ |..+..+ .
T Consensus 74 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~-D~~~~l~-----~ 147 (283)
T 2i7c_A 74 TVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE-DASKFLE-----N 147 (283)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES-CHHHHHH-----H
T ss_pred hcCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEEC-ChHHHHH-----h
Confidence 34456789999999999999999987 35799999999999999999875421 2 358999999 9876421 1
Q ss_pred CCCcccEEEEchhhHhhChhcH--HHHHHHHHhccccCceEEEEcCC
Q 047022 256 FLGNFSTVFICGMIEAVGHDYM--EELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~--~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|++.....+.+.... ..+++.+.++|+|||++++...+
T Consensus 148 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 148 VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 2478999999543222221222 78999999999999999887644
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.26 E-value=9e-12 Score=117.60 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=83.4
Q ss_pred CEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
.+|||||||+|.++..+++. ++.+++++|+++.+++.|++++.... .++++++.+ |..+... .+..++||+|+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~-Da~~~l~----~~~~~~fDvIi 164 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVD-DARMVAE----SFTPASRDVII 164 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEES-CHHHHHH----TCCTTCEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEEC-cHHHHHh----hccCCCCCEEE
Confidence 49999999999999999985 68899999999999999999875322 358999999 9876521 12347899999
Q ss_pred EchhhHhhChh--cHHHHHHHHHhccccCceEEEEcC
Q 047022 265 ICGMIEAVGHD--YMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 265 s~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+.......... ....+++.++++|+|||++++...
T Consensus 165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 85322211111 127899999999999999887654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=119.49 Aligned_cols=114 Identities=17% Similarity=0.089 Sum_probs=90.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC-CCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL-QDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl-~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||+|||+|.+++.+++....+|+++|+|+.+++.|++++..+++ .+++++..+ |+.+..+. + .....+||
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~-D~~~~~~~-~-~~~~~~fD 295 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRD-DVFKLLRT-Y-RDRGEKFD 295 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEES-CHHHHHHH-H-HHTTCCEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC-CHHHHHHH-H-HhcCCCCC
Confidence 47889999999999999999986335999999999999999999999988 668999999 98775310 0 00136899
Q ss_pred EEEEchhh---------HhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 262 TVFICGMI---------EAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 262 ~Ivs~~~l---------~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+|++.--. .+. ..+..++..+.++|+|||.++++....
T Consensus 296 ~Ii~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 296 VIVMDPPKFVENKSQLMGAC--RGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp EEEECCSSTTTCSSSSSCCC--THHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99996311 111 357789999999999999988876543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=108.16 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 170 IRKVSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 170 ~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.-|+..+.++.. ++++.+|||+|||+|.++..++++ +.+|+|+|+++.. .+ .++++.++ |+.+.+
T Consensus 10 ~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~-~~v~~~~~-D~~~~~ 75 (191)
T 3dou_A 10 AFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI-AGVRFIRC-DIFKET 75 (191)
T ss_dssp HHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC-TTCEEEEC-CTTSSS
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC-CCeEEEEc-cccCHH
Confidence 345666777665 468999999999999999999997 8899999999751 12 47999999 987753
Q ss_pred cCC-ccc-cC---CCcccEEEEchhh--------HhhC-hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 249 PTN-MTE-LF---LGNFSTVFICGMI--------EAVG-HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 249 ~~~-l~~-~~---~~~fD~Ivs~~~l--------~~~~-~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
... +.. +. .++||+|+|.... .+.. ......+++.+.++|||||.+++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 76 IFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 100 000 01 1489999996422 2210 01245788999999999999887654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=117.17 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=85.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH--cC-C-CCCeEEEEecCccccCcCCccccCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKE--AG-L-QDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~--~g-l-~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
.++.+|||||||+|.++..++++ .+.+|+++|+++.+++.|++++.. .+ + .++++++.+ |+.+..+ ...
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~-D~~~~l~-----~~~ 149 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID-DARAYLE-----RTE 149 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES-CHHHHHH-----HCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEc-hHHHHHH-----hcC
Confidence 45689999999999999999987 457999999999999999998764 22 2 358999999 9876421 134
Q ss_pred CcccEEEEchhhHh---hChhc--HHHHHHHHHhccccCceEEEEc
Q 047022 258 GNFSTVFICGMIEA---VGHDY--MEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~---~~~~~--~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++||+|++....+. -+... ...+++.+.++|||||++++..
T Consensus 150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 78999999754422 11111 4789999999999999988764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=119.33 Aligned_cols=111 Identities=18% Similarity=0.113 Sum_probs=89.5
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++.+|||+|||+|.+++.+++. ..+|+++|+|+.+++.|++++..+++. ++++..+ |+.+..+.. ....++||+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~-d~~~~~~~~--~~~~~~fD~I 283 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEA-NAFDLLRRL--EKEGERFDLV 283 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEES-CHHHHHHHH--HHTTCCEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEEC-CHHHHHHHH--HhcCCCeeEE
Confidence 7789999999999999999997 779999999999999999999999886 4999999 987753100 0014689999
Q ss_pred EEch---------hhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 264 FICG---------MIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 264 vs~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
++.- ...+. ..+..++..+.++|+|||.++++....
T Consensus 284 i~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 284 VLDPPAFAKGKKDVERAY--RAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp EECCCCSCCSTTSHHHHH--HHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9842 22222 456789999999999999988887543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.7e-12 Score=119.46 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=82.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEecCccccCcCCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEA--GL-QDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~--gl-~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
.++.+|||||||+|..+..++++ +..+|+++|+++.+++.|++++... ++ .+++++..+ |+.+..+ ...+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~-D~~~~l~-----~~~~ 180 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG-DGFEFLK-----NHKN 180 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS-CHHHHHH-----HCTT
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEC-hHHHHHH-----hcCC
Confidence 45679999999999999999987 4579999999999999999987543 33 458999999 9876321 1347
Q ss_pred cccEEEEchhhHhhCh-hcH--HHHHHHHHhccccCceEEEEcC
Q 047022 259 NFSTVFICGMIEAVGH-DYM--EELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~-~~~--~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+||+|++... .+++. ... ..+++.+.++|+|||++++...
T Consensus 181 ~fD~Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 181 EFDVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp CEEEEEECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred CceEEEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 8999998643 33321 111 7899999999999999988763
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.2e-12 Score=117.44 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=82.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc--CC--------CCCeEEEEecCccccCcCCc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA--GL--------QDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~--gl--------~~~i~~~~~~d~~~l~~~~l 252 (381)
.++.+|||||||+|.++..++++...+|+++|+++.+++.|++++ .. ++ .+++++..+ |..+..+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~-D~~~~l~--- 148 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIG-DGFEFIK--- 148 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEES-CHHHHHH---
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEEC-chHHHhc---
Confidence 456899999999999999999874469999999999999999987 33 32 358999999 9866420
Q ss_pred cccCCCcccEEEEchhhHhhCh-hc--HHHHHHHHHhccccCceEEEEcC
Q 047022 253 TELFLGNFSTVFICGMIEAVGH-DY--MEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~-~~--~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
. .++||+|++.... +.+. .. ...+++.+.++|+|||++++...
T Consensus 149 --~-~~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 149 --N-NRGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp --H-CCCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --c-cCCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 1 3789999986432 1111 11 37889999999999999887643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=127.29 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=90.4
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+|.+|||+|||+|.+++.+++. ++ +|+++|+|+.+++.|++++..+++. ++++++.+ |+.+..+ ...++||
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~-D~~~~l~-----~~~~~fD 611 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQA-DCLAWLR-----EANEQFD 611 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEES-CHHHHHH-----HCCCCEE
T ss_pred CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEec-CHHHHHH-----hcCCCcc
Confidence 6889999999999999999985 54 6999999999999999999999987 68999999 9877421 1347899
Q ss_pred EEEEch-----------hhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 262 TVFICG-----------MIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 262 ~Ivs~~-----------~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+|++.- ++.+. .++..+++.+.++|+|||+++++....
T Consensus 612 ~Ii~DPP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 612 LIFIDPPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp EEEECCCSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred EEEECCccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 999843 12222 467889999999999999999887553
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=104.86 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=86.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+..+|||||||.|.++..+. .+.+|+++|+++.+++.+++++...+. +..+.++ |....+ ..++||+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~-D~~~~~-------~~~~~Dv 171 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQ-DVLCAP-------PAEAGDL 171 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEEC-CTTTSC-------CCCBCSE
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEe-ecccCC-------CCCCcch
Confidence 456799999999999999887 588999999999999999999888774 5889999 987766 4479999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|++.-+++|+.+......+ ++...|+++|. +|+.|.
T Consensus 172 vLllk~lh~LE~q~~~~~~-~ll~aL~~~~v-vVsfPt 207 (253)
T 3frh_A 172 ALIFKLLPLLEREQAGSAM-ALLQSLNTPRM-AVSFPT 207 (253)
T ss_dssp EEEESCHHHHHHHSTTHHH-HHHHHCBCSEE-EEEEEC
T ss_pred HHHHHHHHHhhhhchhhHH-HHHHHhcCCCE-EEEcCh
Confidence 9999888888655555566 77778999865 556663
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=117.96 Aligned_cols=111 Identities=13% Similarity=0.217 Sum_probs=85.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEecCccccCcCCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKE--AGL-QDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~--~gl-~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
.++.+|||||||+|.++..++++ ++.+|+++|+|+.+++.|++++.. .++ .+++++..+ |+.+..+ ...+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~-D~~~~l~-----~~~~ 188 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE-DASKFLE-----NVTN 188 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES-CHHHHHH-----HCCS
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEc-cHHHHHh-----hcCC
Confidence 45689999999999999999987 467999999999999999998764 223 358999999 9876421 1247
Q ss_pred cccEEEEchhhHhhCh-hc--HHHHHHHHHhccccCceEEEEcCC
Q 047022 259 NFSTVFICGMIEAVGH-DY--MEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~-~~--~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+||+|++... .+++. .. ...+++.+.++|||||++++...+
T Consensus 189 ~fDvIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 189 TYDVIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp CEEEEEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CceEEEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 8999998642 11111 11 178999999999999998887543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=117.24 Aligned_cols=107 Identities=20% Similarity=0.146 Sum_probs=85.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++|.+|||+|||+|.+++.+++. |+.|+++|+|+.+++.|++++..+++.. ++..+ |+.+..+. . .+.||+
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~-D~~~~l~~----~-~~~fD~ 283 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHG-EALPTLRG----L-EGPFHH 283 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEES-CHHHHHHT----C-CCCEEE
T ss_pred cCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEc-cHHHHHHH----h-cCCCCE
Confidence 46899999999999999999996 8889999999999999999999998863 56688 88775311 1 244999
Q ss_pred EEEchhh---------HhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICGMI---------EAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l---------~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|++.-.. ... ..+..+++.+.++|||||.+++.+..
T Consensus 284 Ii~dpP~f~~~~~~~~~~~--~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 284 VLLDPPTLVKRPEELPAMK--RHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp EEECCCCCCSSGGGHHHHH--HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEECCCcCCCCHHHHHHHH--HHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9985321 111 35678999999999999998866544
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=115.72 Aligned_cols=112 Identities=21% Similarity=0.314 Sum_probs=84.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEecCccccCcCCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKE--AGL-QDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~--~gl-~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
..+.+|||||||+|..+..++++ ...+|+++|+++.+++.|++++.. .++ .+++++..+ |+.+..+ ...+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~-D~~~~l~-----~~~~ 162 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIA-NGAEYVR-----KFKN 162 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-CHHHHGG-----GCSS
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEEC-cHHHHHh-----hCCC
Confidence 45579999999999999999987 457999999999999999998754 233 358999999 9876421 1347
Q ss_pred cccEEEEchhhHhhChh---cHHHHHHHHHhccccCceEEEEcCC
Q 047022 259 NFSTVFICGMIEAVGHD---YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~---~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+||+|++...-.+++.. ....+++.+.++|||||++++...+
T Consensus 163 ~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 163 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 89999985322112111 2378999999999999999887644
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-12 Score=120.59 Aligned_cols=117 Identities=15% Similarity=0.036 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHH-HHcCCCCCeEEE--EecCcccc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKV-KEAGLQDTSDYI--FVITVNCL 247 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~-~~~gl~~~i~~~--~~~d~~~l 247 (381)
.++..+.+...++++.+|||+|||+|.++..++++ .+|+|+|+|+ |+..+++.. .......++.+. ++ |++++
T Consensus 69 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~-D~~~l 144 (276)
T 2wa2_A 69 AKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKV-DVTKM 144 (276)
T ss_dssp HHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSC-CGGGC
T ss_pred HHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccC-cHhhC
Confidence 44556666655678999999999999999999986 6899999998 533322110 000111268888 88 98876
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChh---cH--HHHHHHHHhccccCc--eEEEEcCC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHD---YM--EELFSCCESLLAENG--LSCSTVPD 300 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~---~~--~~~l~~~~~~LkpgG--~~~i~~~~ 300 (381)
+ +++||+|+|..+ ++.+.. .. ..+++.+.++||||| .+++.+..
T Consensus 145 ~--------~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 145 E--------PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp C--------CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred C--------CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 5 368999999766 332211 11 137899999999999 87776644
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=112.20 Aligned_cols=106 Identities=11% Similarity=0.094 Sum_probs=86.7
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCccccCCCc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTELFLGN 259 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~~~~~ 259 (381)
..++.+|||+| |+|.+++.+++. ++.+|+++|+|+.+++.|++++...|+. +++++.+ |+.+ ++. ...++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~-D~~~~l~~-----~~~~~ 241 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTF-DLRKPLPD-----YALHK 241 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECC-CTTSCCCT-----TTSSC
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEC-hhhhhchh-----hccCC
Confidence 34688999999 999999999886 3369999999999999999999998886 8999999 9988 551 12468
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCce-EEEEc
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGL-SCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~-~~i~~ 298 (381)
||+|+++..+... ....+++++.++|||||+ +++++
T Consensus 242 fD~Vi~~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 242 FDTFITDPPETLE---AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp BSEEEECCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred ccEEEECCCCchH---HHHHHHHHHHHHcccCCeEEEEEE
Confidence 9999997544333 248899999999999995 45554
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=114.67 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=85.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEecCccccCcCCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEA--GL-QDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~--gl-~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
..+.+|||||||+|.++..++++. ..+|+++|+++.+++.|++++... ++ .++++++.+ |+.+.-+ ...+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~-D~~~~l~-----~~~~ 147 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD-DGFMHIA-----KSEN 147 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES-CSHHHHH-----TCCS
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEEC-cHHHHHh-----hCCC
Confidence 356799999999999999999873 479999999999999999987542 33 358999999 9876321 1247
Q ss_pred cccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEEEcCC
Q 047022 259 NFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+||+|++.......+.. ....+++.+.++|+|||++++...+
T Consensus 148 ~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 89999996432211111 1368999999999999999887643
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=116.05 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=92.1
Q ss_pred HHHHHHc-CCCCCCEEEEecCCchHHHHHHHHhc-C-----CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 174 SVLIEKV-KLVKGQEVLEIGCGWGTLAIEIVRQT-G-----CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 174 ~~l~~~l-~~~~~~~VLDiGcG~G~~~~~la~~~-~-----~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
..++..+ ...++.+|||+|||+|.++..+++.. . .+++|+|+++.+++.|+.++...++ ++.+..+ |...
T Consensus 119 ~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~-D~l~ 195 (344)
T 2f8l_A 119 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQ-DGLA 195 (344)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEES-CTTS
T ss_pred HHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEEC-CCCC
Confidence 3444444 44567899999999999999998763 2 7899999999999999999888776 5889999 8765
Q ss_pred cCcCCccccCCCcccEEEEchhhHhhChhc---------------H-HHHHHHHHhccccCceEEEEcCCC
Q 047022 247 LKPTNMTELFLGNFSTVFICGMIEAVGHDY---------------M-EELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 247 l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~---------------~-~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
.. ..++||+|+++-.+.+++..+ . ..+++.+.+.|+|||++++.+|+.
T Consensus 196 ~~-------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 196 NL-------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp CC-------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred cc-------ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 43 347899999987665543221 1 258999999999999988877654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-12 Score=119.80 Aligned_cols=117 Identities=11% Similarity=-0.022 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHH-HHcCCCCCeEEE--EecCcccc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKV-KEAGLQDTSDYI--FVITVNCL 247 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~-~~~gl~~~i~~~--~~~d~~~l 247 (381)
.++..+.++..++++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++.. .......++.+. .+ |+.++
T Consensus 61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~-D~~~l 136 (265)
T 2oxt_A 61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRV-DIHTL 136 (265)
T ss_dssp HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSC-CTTTS
T ss_pred HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEeccc-CHhHC
Confidence 44556666655678999999999999999999986 7899999998 532221110 000011168888 88 88876
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhc---H--HHHHHHHHhccccCc--eEEEEcCC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDY---M--EELFSCCESLLAENG--LSCSTVPD 300 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~---~--~~~l~~~~~~LkpgG--~~~i~~~~ 300 (381)
+ +++||+|+|..+ ++.+... . ..+++.+.++||||| .+++.+..
T Consensus 137 ~--------~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 137 P--------VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp C--------CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred C--------CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 5 368999999766 3332211 1 137899999999999 88876644
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-11 Score=112.21 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=83.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.+++++...++ +++++..+ |+.+++
T Consensus 29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~-D~~~~~-- 103 (299)
T 2h1r_A 29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEG-DAIKTV-- 103 (299)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC-----CCSSC--
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEEC-chhhCC--
Confidence 45667888888889999999999999999999986 78999999999999999999887776 48999999 998776
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHH---------------HHHHhccccCce
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELF---------------SCCESLLAENGL 293 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l---------------~~~~~~LkpgG~ 293 (381)
..+||+|+++.... +.......++ +.+.++++|+|.
T Consensus 104 ------~~~~D~Vv~n~py~-~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~ 154 (299)
T 2h1r_A 104 ------FPKFDVCTANIPYK-ISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD 154 (299)
T ss_dssp ------CCCCSEEEEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred ------cccCCEEEEcCCcc-cccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence 24799999964433 2222222333 446788888774
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=113.56 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=95.0
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cC--------------------------------------CEEEEEc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TG--------------------------------------CKYTGIT 214 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~gvD 214 (381)
..++......++..|||.+||+|++++.++.. .+ .+|+|+|
T Consensus 191 a~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD 270 (393)
T 3k0b_A 191 AALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGD 270 (393)
T ss_dssp HHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred HHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEE
Confidence 45677788888999999999999999998875 22 4699999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh-HhhCh-hcHHHHHHHHHhcccc--
Q 047022 215 LSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI-EAVGH-DYMEELFSCCESLLAE-- 290 (381)
Q Consensus 215 is~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l-~~~~~-~~~~~~l~~~~~~Lkp-- 290 (381)
+++.+++.|++++..+|+.+++++.++ |+.+++ ..++||+|+++--+ +.++. .+...+++.+.+.||+
T Consensus 271 id~~al~~Ar~Na~~~gl~~~I~~~~~-D~~~~~-------~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~ 342 (393)
T 3k0b_A 271 IDARLIEIAKQNAVEAGLGDLITFRQL-QVADFQ-------TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMP 342 (393)
T ss_dssp SCHHHHHHHHHHHHHTTCTTCSEEEEC-CGGGCC-------CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEEC-ChHhCC-------CCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCC
Confidence 999999999999999999888999999 999887 33689999998322 11211 3456677777777776
Q ss_pred CceEEEEcCCCC
Q 047022 291 NGLSCSTVPDQC 302 (381)
Q Consensus 291 gG~~~i~~~~~~ 302 (381)
||.+++.+++..
T Consensus 343 g~~~~iit~~~~ 354 (393)
T 3k0b_A 343 TWSVYVLTSYEL 354 (393)
T ss_dssp TCEEEEEECCTT
T ss_pred CCEEEEEECCHH
Confidence 888777666544
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-11 Score=118.35 Aligned_cols=120 Identities=12% Similarity=0.098 Sum_probs=93.9
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+...+..+++.+|||+|||+|..+.++++.. +.+|+++|+++.+++.+++++...|+. +++..+ |..+++.
T Consensus 237 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~-D~~~~~~---- 309 (429)
T 1sqg_A 237 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQG-DGRYPSQ---- 309 (429)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEEC-CTTCTHH----
T ss_pred HHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeC-chhhchh----
Confidence 45566778899999999999999999999873 479999999999999999999988873 889999 9877641
Q ss_pred ccCCCcccEEEE------chhhHhhChh--------------cHHHHHHHHHhccccCceEEEEcCCC
Q 047022 254 ELFLGNFSTVFI------CGMIEAVGHD--------------YMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 254 ~~~~~~fD~Ivs------~~~l~~~~~~--------------~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
.+..++||+|++ .+++.+.++. ....+++.+.++|||||++++++...
T Consensus 310 ~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 310 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 123468999996 2334333221 12578999999999999988877543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-10 Score=110.78 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=96.4
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cC--------------------------------------CEEEEEc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TG--------------------------------------CKYTGIT 214 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~gvD 214 (381)
..++......++..|||.+||+|++++.++.. .+ .+++|+|
T Consensus 184 aall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvD 263 (384)
T 3ldg_A 184 AAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFD 263 (384)
T ss_dssp HHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred HHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 35677777888999999999999999998865 22 4699999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh-HhhC-hhcHHHHHHHHHhcccc--
Q 047022 215 LSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI-EAVG-HDYMEELFSCCESLLAE-- 290 (381)
Q Consensus 215 is~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l-~~~~-~~~~~~~l~~~~~~Lkp-- 290 (381)
+++.+++.|++++..+|+.+++++..+ |+.+++ ..++||+|+++--+ +.++ ..+...+++.+.+.||+
T Consensus 264 id~~al~~Ar~Na~~~gl~~~I~~~~~-D~~~l~-------~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~ 335 (384)
T 3ldg_A 264 FDGRMVEIARKNAREVGLEDVVKLKQM-RLQDFK-------TNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLK 335 (384)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTEEEEEC-CGGGCC-------CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEEC-ChHHCC-------ccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999888999999 999887 33689999997322 1122 23567778888888876
Q ss_pred CceEEEEcCCCC
Q 047022 291 NGLSCSTVPDQC 302 (381)
Q Consensus 291 gG~~~i~~~~~~ 302 (381)
||.+++.+++..
T Consensus 336 g~~~~iit~~~~ 347 (384)
T 3ldg_A 336 TWSQFILTNDTD 347 (384)
T ss_dssp TSEEEEEESCTT
T ss_pred CcEEEEEECCHH
Confidence 888777776544
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-10 Score=113.82 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 169 q~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
....++.+++.+.+.++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++++..+++. +++|..+ |+.+..
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~-d~~~~l 347 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHE-NLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEEC-CTTSCC
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEC-CHHHHh
Confidence 3455667778887788899999999999999999986 889999999999999999999988886 8999999 987732
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+. + .+..++||+|++. .|......+++.+.+ ++|++.++++.
T Consensus 348 ~~-~-~~~~~~fD~Vv~d-----PPr~g~~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 348 TK-Q-PWAKNGFDKVLLD-----PARAGAAGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp SS-S-GGGTTCCSEEEEC-----CCTTCCHHHHHHHHH-HCCSEEEEEES
T ss_pred hh-h-hhhcCCCCEEEEC-----CCCccHHHHHHHHHh-cCCCeEEEEEC
Confidence 10 0 0234689999986 222222345555543 78998888875
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.7e-11 Score=113.69 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=84.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.++.+|||+|||+|.+++. ++ .+.+|+++|+|+.+++.+++++..+++.+++++..+ |+.+.. ++||+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~-D~~~~~---------~~fD~ 261 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILS-DVREVD---------VKGNR 261 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CGGGCC---------CCEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-ChHHhc---------CCCcE
Confidence 4789999999999999999 87 478999999999999999999999998778999999 987754 78999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|++.-. .....+++.+.++|+|||.+++..
T Consensus 262 Vi~dpP------~~~~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 262 VIMNLP------KFAHKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp EEECCT------TTGGGGHHHHHHHEEEEEEEEEEE
T ss_pred EEECCc------HhHHHHHHHHHHHcCCCCEEEEEE
Confidence 998621 223478889999999999977654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=6e-11 Score=103.86 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=78.7
Q ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhcC----------CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE-E
Q 047022 173 VSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQTG----------CKYTGITLSELQLKYAEIKVKEAGLQDTSDYI-F 240 (381)
Q Consensus 173 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~----------~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~-~ 240 (381)
+..+.+... ++++.+|||+|||+|.++..+++..+ .+|+++|+|+.. .+ .++++. .
T Consensus 10 l~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~ 77 (196)
T 2nyu_A 10 LLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCP 77 (196)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECS
T ss_pred HHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEe
Confidence 334444444 57889999999999999999998743 799999999841 12 368888 8
Q ss_pred ecCccccCcCC-c-cccCCCcccEEEEchhhHhhCh--hc-------HHHHHHHHHhccccCceEEEEcCC
Q 047022 241 VITVNCLKPTN-M-TELFLGNFSTVFICGMIEAVGH--DY-------MEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 241 ~~d~~~l~~~~-l-~~~~~~~fD~Ivs~~~l~~~~~--~~-------~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+ |+....... + ..+..++||+|++..+++..+. .+ ...+++++.++|||||.+++....
T Consensus 78 ~-d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 78 A-DVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp C-CTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred c-cCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 8 876542000 0 0012358999999654332111 11 147899999999999998887643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-10 Score=110.62 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=95.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cC--------------------------------------CEEEEEc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TG--------------------------------------CKYTGIT 214 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~--------------------------------------~~v~gvD 214 (381)
..++......++.+|||++||+|.+++.++.. .+ .+|+|+|
T Consensus 185 a~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD 264 (385)
T 3ldu_A 185 AGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYD 264 (385)
T ss_dssp HHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEE
T ss_pred HHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence 35677777888999999999999999999875 11 5799999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh-HhhC-hhcHHHHHHHHHhcccc--
Q 047022 215 LSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI-EAVG-HDYMEELFSCCESLLAE-- 290 (381)
Q Consensus 215 is~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l-~~~~-~~~~~~~l~~~~~~Lkp-- 290 (381)
+++.+++.|++++..+|+.+++++.++ |+.+++ ..++||+|+++--+ +.++ .++...+++.+.+.||+
T Consensus 265 id~~ai~~Ar~Na~~~gl~~~i~~~~~-D~~~l~-------~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~ 336 (385)
T 3ldu_A 265 IDEESIDIARENAEIAGVDEYIEFNVG-DATQFK-------SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK 336 (385)
T ss_dssp SCHHHHHHHHHHHHHHTCGGGEEEEEC-CGGGCC-------CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEEC-ChhhcC-------cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999878999999 999887 34689999996432 1222 13466778888888877
Q ss_pred CceEEEEcCCCC
Q 047022 291 NGLSCSTVPDQC 302 (381)
Q Consensus 291 gG~~~i~~~~~~ 302 (381)
||.+++.+++..
T Consensus 337 g~~~~iit~~~~ 348 (385)
T 3ldu_A 337 NWSYYLITSYED 348 (385)
T ss_dssp SCEEEEEESCTT
T ss_pred CCEEEEEECCHH
Confidence 888776666543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-10 Score=111.22 Aligned_cols=100 Identities=17% Similarity=0.283 Sum_probs=81.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+.++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++++..+++. +++..+ |+.++. . .+||
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~-d~~~~~-------~-~~fD 355 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVA-SDREVS-------V-KGFD 355 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEEC-CTTTCC-------C-TTCS
T ss_pred cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEEC-ChHHcC-------c-cCCC
Confidence 457889999999999999999986 789999999999999999999988875 999999 998865 2 2899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|++.-.-... ...+++.+. .|+|+|.++++.
T Consensus 356 ~Vv~dPPr~g~----~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 356 TVIVDPPRAGL----HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp EEEECCCTTCS----CHHHHHHHH-HHCCSEEEEEES
T ss_pred EEEEcCCccch----HHHHHHHHH-hcCCCcEEEEEC
Confidence 99996321111 134555554 489999999885
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.5e-11 Score=109.34 Aligned_cols=101 Identities=12% Similarity=-0.047 Sum_probs=80.6
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH--cCC-CCCeEEEEecCccccCcCCccccCCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE--AGL-QDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~--~gl-~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
...+.+|||||||+|.++..++++ +.+|+++|+++.+++.|++++.. .++ .+++++..+ |..+.. +
T Consensus 70 ~~~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~-D~~~~~---------~ 138 (262)
T 2cmg_A 70 KKELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDI---------K 138 (262)
T ss_dssp SSCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESS-GGGSCC---------C
T ss_pred CCCCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEec-hHHHHH---------h
Confidence 345679999999999999999987 58999999999999999886532 112 247999999 887643 6
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+||+|++. .. ++..+++.+.++|+|||++++....
T Consensus 139 ~fD~Ii~d-----~~--dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 139 KYDLIFCL-----QE--PDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp CEEEEEES-----SC--CCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred hCCEEEEC-----CC--ChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 89999987 22 2345899999999999998886543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=115.71 Aligned_cols=122 Identities=11% Similarity=0.145 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--------------cCCEEEEEcCCHHHHHHHHHHHHHcCCCC-C
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--------------TGCKYTGITLSELQLKYAEIKVKEAGLQD-T 235 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--------------~~~~v~gvDis~~~~~~a~~~~~~~gl~~-~ 235 (381)
...+.+++.+...++.+|||.|||+|.++..+++. .+..++|+|+++.+++.|+.++...|+.. +
T Consensus 158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 34556777777778899999999999999998875 24689999999999999999988888753 6
Q ss_pred eEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChh---------------cHHHHHHHHHhccccCceEEEEcCC
Q 047022 236 SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD---------------YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 236 i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~---------------~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+.+..+ |....+ ..++||+|+++-.+.+.... ....+++.+.+.|||||++++.+|+
T Consensus 238 ~~i~~g-D~l~~~-------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 238 SPIVCE-DSLEKE-------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp CSEEEC-CTTTSC-------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCEeeC-CCCCCc-------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 788999 887765 23589999998655443211 1247899999999999998777764
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.9e-10 Score=105.00 Aligned_cols=88 Identities=24% Similarity=0.195 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+++.+++.+++++... ++++++.+ |+.+++
T Consensus 36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~g-D~l~~~- 109 (295)
T 3gru_A 36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWG-DALKVD- 109 (295)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEES-CTTTSC-
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC---CCeEEEEC-chhhCC-
Confidence 355678899999999999999999999999999996 889999999999999999998732 48999999 999876
Q ss_pred CCccccCCCcccEEEEchh
Q 047022 250 TNMTELFLGNFSTVFICGM 268 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~ 268 (381)
++..+||+|+++..
T Consensus 110 -----~~~~~fD~Iv~NlP 123 (295)
T 3gru_A 110 -----LNKLDFNKVVANLP 123 (295)
T ss_dssp -----GGGSCCSEEEEECC
T ss_pred -----cccCCccEEEEeCc
Confidence 34467999998743
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.5e-10 Score=101.99 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
....+.+++.+.+.++.+|||||||+|.++..++++ +.+|+++|+|+.+++.++++.... +++++..+ |+.+++
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~-D~~~~~- 89 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNK-DILQFK- 89 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECC-CGGGCC-
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEC-hHHhCC-
Confidence 355668888888889999999999999999999986 789999999999999999887532 48999999 998886
Q ss_pred CCccccCC-CcccEEEEch-----------hhHhhChhcHHHHH----HHHHhccccCce
Q 047022 250 TNMTELFL-GNFSTVFICG-----------MIEAVGHDYMEELF----SCCESLLAENGL 293 (381)
Q Consensus 250 ~~l~~~~~-~~fD~Ivs~~-----------~l~~~~~~~~~~~l----~~~~~~LkpgG~ 293 (381)
+.. ..| .|+++- .++|.+ ....++ +.+.++++|+|.
T Consensus 90 -----~~~~~~~-~vv~nlPy~~~~~~l~~~l~~~~--~~~~~lm~q~e~a~rll~~~G~ 141 (244)
T 1qam_A 90 -----FPKNQSY-KIFGNIPYNISTDIIRKIVFDSI--ADEIYLIVEYGFAKRLLNTKRS 141 (244)
T ss_dssp -----CCSSCCC-EEEEECCGGGHHHHHHHHHHSCC--CSEEEEEEEHHHHHHHTCTTSH
T ss_pred -----cccCCCe-EEEEeCCcccCHHHHHHHHhcCC--CCeEEEEEEHHHHHHHhcCCcc
Confidence 232 345 455542 122211 111223 447888999987
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.1e-11 Score=111.91 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcC----CHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITL----SELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDi----s~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
++..+.++..++++.+|||+|||+|.++..++++ .+|+|+|+ ++.+++.+. ....+. +++++..+.|+..+
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l 144 (305)
T 2p41_A 70 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFI 144 (305)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTS
T ss_pred HHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccC
Confidence 3445555544678899999999999999999986 58999999 554432111 011111 35676654245444
Q ss_pred CcCCccccCCCcccEEEEchhhH---hhChh-cHHHHHHHHHhccccCceEEEEcCCC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIE---AVGHD-YMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~---~~~~~-~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+ .++||+|+|..++. +..+. ....+++.+.++|||||.+++.+...
T Consensus 145 ~--------~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 145 P--------PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp C--------CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred C--------cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 3 36899999976542 11111 01157899999999999988876543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-10 Score=112.45 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
...+.+++.+...++.+|||+|||+|.++..++++ .+.+++|+|+++.+++.| .++++..+ |+.+..
T Consensus 26 ~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~-D~~~~~ 94 (421)
T 2ih2_A 26 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILA-DFLLWE 94 (421)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEES-CGGGCC
T ss_pred HHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeC-ChhhcC
Confidence 34456677776556779999999999999999986 457999999999988766 36899999 998765
Q ss_pred cCCccccCCCcccEEEEchhhHh----------hChh-----------------cHHHHHHHHHhccccCceEEEEcCCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEA----------VGHD-----------------YMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~----------~~~~-----------------~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
..++||+|+++--+.. +..+ ....+++.+.++|+|||++++.+|..
T Consensus 95 -------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 95 -------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp -------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred -------ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 3478999999521100 1110 12367999999999999988877753
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.6e-09 Score=99.89 Aligned_cols=120 Identities=9% Similarity=0.019 Sum_probs=87.3
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+...+.++++.+|||+|||+|+.+.++++.. ..+|+++|+++.+++.+++++...|+. ++++..+ |+.++.+..
T Consensus 94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~-D~~~~~~~~-- 169 (309)
T 2b9e_A 94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEE-DFLAVSPSD-- 169 (309)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEEC-CGGGSCTTC--
T ss_pred HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeC-ChHhcCccc--
Confidence 4456678899999999999999999999862 479999999999999999999999885 7999999 998875210
Q ss_pred ccCCCcccEEEEc------hhhHhhCh---------hc-------HHHHHHHHHhccccCceEEEEcCCC
Q 047022 254 ELFLGNFSTVFIC------GMIEAVGH---------DY-------MEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 254 ~~~~~~fD~Ivs~------~~l~~~~~---------~~-------~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
...++||+|++. +++..-++ ++ ...+++.+.++|+ ||+++.++...
T Consensus 170 -~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 170 -PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp -GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred -cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 001579999962 23322111 11 1346777777786 99988776553
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=101.75 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=70.8
Q ss_pred cCCCCCCEEEEecC------CchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE-EEecCccccCcC
Q 047022 180 VKLVKGQEVLEIGC------GWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDY-IFVITVNCLKPT 250 (381)
Q Consensus 180 l~~~~~~~VLDiGc------G~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~-~~~~d~~~l~~~ 250 (381)
+.++++.+|||+|| |+|. ..+++.. +.+|+|+|+|+. + .++++ +++ |+.+++
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~g-D~~~~~-- 119 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIG-DCATVH-- 119 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEES-CGGGCC--
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEEC-ccccCC--
Confidence 46789999999999 5587 4445442 579999999987 1 26889 999 998876
Q ss_pred CccccCCCcccEEEEchhhHhhC---------hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVG---------HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~---------~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|+|....+..+ ......+++++.++|||||.+++...
T Consensus 120 -----~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 120 -----TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp -----CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -----ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 237899999964321100 11246889999999999999888653
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-09 Score=110.01 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=78.9
Q ss_pred CCEEEEecCCchHHH---HHHHHhcCC--EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 185 GQEVLEIGCGWGTLA---IEIVRQTGC--KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~---~~la~~~~~--~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
+..|||+|||+|.++ +.++++.+. +|.+||.|+ +...+++....+++.++|+++.+ |.+++. .+++
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~g-d~eev~-------LPEK 428 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSS-DMREWV-------APEK 428 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEES-CTTTCC-------CSSC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeC-cceecc-------CCcc
Confidence 457999999999994 444444343 789999997 67788999999999999999999 999987 3478
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
+|+|||-.|=..+..+...+.+....+.|||||.+
T Consensus 429 VDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGim 463 (637)
T 4gqb_A 429 ADIIVSELLGSFADNELSPECLDGAQHFLKDDGVS 463 (637)
T ss_dssp EEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred cCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEE
Confidence 99999955432222244567888889999999993
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=105.66 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...+..+++.+... +.+|||+|||+|.+++.+++. ..+|+++|+|+.+++.|++++..+++. ++++..+ |+.+..+
T Consensus 200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~-d~~~~~~ 275 (369)
T 3bt7_A 200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRM-AAEEFTQ 275 (369)
T ss_dssp HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECC-CSHHHHH
T ss_pred HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEC-CHHHHHH
Confidence 44556777777654 578999999999999999884 679999999999999999999999884 8999999 9876521
Q ss_pred CCccccCC--------------CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 250 TNMTELFL--------------GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 250 ~~l~~~~~--------------~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
. +.. .+||+|+..- |. ..+..++.+.|+|+|.+++...
T Consensus 276 ~----~~~~~~~~~l~~~~~~~~~fD~Vv~dP-----Pr---~g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 276 A----MNGVREFNRLQGIDLKSYQCETIFVDP-----PR---SGLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp H----HSSCCCCTTGGGSCGGGCCEEEEEECC-----CT---TCCCHHHHHHHTTSSEEEEEES
T ss_pred H----HhhccccccccccccccCCCCEEEECc-----Cc---cccHHHHHHHHhCCCEEEEEEC
Confidence 0 111 3799999751 11 1234556777778888665543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=99.75 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
..++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++.+ |+.+++.+
T Consensus 16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~-D~~~~~~~ 90 (255)
T 3tqs_A 16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQN-DALQFDFS 90 (255)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEES-CTTTCCGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEc-chHhCCHH
Confidence 45668889999999999999999999999999986 78999999999999999998764 358999999 99988622
Q ss_pred CccccCCCcccEEEEc
Q 047022 251 NMTELFLGNFSTVFIC 266 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~ 266 (381)
.+ ...++|| |+++
T Consensus 91 ~~--~~~~~~~-vv~N 103 (255)
T 3tqs_A 91 SV--KTDKPLR-VVGN 103 (255)
T ss_dssp GS--CCSSCEE-EEEE
T ss_pred Hh--ccCCCeE-EEec
Confidence 11 1135688 6665
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-08 Score=94.38 Aligned_cols=174 Identities=9% Similarity=0.075 Sum_probs=104.6
Q ss_pred HHHHHHHHHHcCCCC-----CCEEEEecCCchHHHHHHHHh----------------cCCEEEEEcCCHHHHHHHHHHHH
Q 047022 170 IRKVSVLIEKVKLVK-----GQEVLEIGCGWGTLAIEIVRQ----------------TGCKYTGITLSELQLKYAEIKVK 228 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~-----~~~VLDiGcG~G~~~~~la~~----------------~~~~v~gvDis~~~~~~a~~~~~ 228 (381)
...++..++.+.+.+ ..+|+|+|||+|..++.++.. +..+|...|+..+.....-+.+.
T Consensus 33 ~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~ 112 (374)
T 3b5i_A 33 LHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP 112 (374)
T ss_dssp HHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred HHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence 445555666666553 478999999999999887431 23567777776665544433322
Q ss_pred HcC-----------CCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhCh-----------------------
Q 047022 229 EAG-----------LQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH----------------------- 274 (381)
Q Consensus 229 ~~g-----------l~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~----------------------- 274 (381)
... ...+-.|..+ .....-. .-+++++||+|+|+.++|++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~f~~g-vpgSFy~---rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~ 188 (374)
T 3b5i_A 113 PLVSNTCMEECLAADGNRSYFVAG-VPGSFYR---RLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGA 188 (374)
T ss_dssp CBCCCC--CCC---CCCBCSEEEE-EESCTTS---CCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSC
T ss_pred hhhhhcchhhhccccCCCceEEEe-cChhhhc---ccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCC
Confidence 110 0001112222 1111100 0156799999999999999861
Q ss_pred -------------hcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCc----h---hh----hhh--------------h
Q 047022 275 -------------DYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLG----P---GF----IKE--------------Y 316 (381)
Q Consensus 275 -------------~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~----~---~~----i~~--------------y 316 (381)
+|+..+++..++.|+|||+++++............ . +. ++. +
T Consensus 189 ~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f 268 (374)
T 3b5i_A 189 GEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGF 268 (374)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccC
Confidence 15567899999999999998887664432211100 0 00 111 1
Q ss_pred ccCCCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 317 IFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 317 i~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
-.| -+.|+.+|+...++++.||.+..++.+.
T Consensus 269 ~~P-~y~ps~~E~~~~l~~~~~F~I~~le~~~ 299 (374)
T 3b5i_A 269 NIP-VYAPSLQDFKEVVDANGSFAIDKLVVYK 299 (374)
T ss_dssp CCC-BCCCCHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred Ccc-ccCCCHHHHHHHHHhcCCcEEEEEEEEe
Confidence 223 2568999998888766899998877653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-09 Score=99.59 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...++.+++.+.+.++ +|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. ++++++.+ |+.+++.
T Consensus 33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~-D~l~~~~ 105 (271)
T 3fut_A 33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQ-DALLYPW 105 (271)
T ss_dssp HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT----SSEEEEES-CGGGSCG
T ss_pred HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC----CCEEEEEC-ChhhCCh
Confidence 3556788999999999 9999999999999999996 78999999999999999998752 48999999 9988872
Q ss_pred CCccccCCCcccEEEEch
Q 047022 250 TNMTELFLGNFSTVFICG 267 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~ 267 (381)
+ ....+|.|+++-
T Consensus 106 ~-----~~~~~~~iv~Nl 118 (271)
T 3fut_A 106 E-----EVPQGSLLVANL 118 (271)
T ss_dssp G-----GSCTTEEEEEEE
T ss_pred h-----hccCccEEEecC
Confidence 1 113689998874
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-09 Score=102.72 Aligned_cols=102 Identities=15% Similarity=-0.012 Sum_probs=83.9
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc---------------CCCCCeEEEEecCcccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEA---------------GLQDTSDYIFVITVNCL 247 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~---------------gl~~~i~~~~~~d~~~l 247 (381)
++.+|||+|||+|..++.++++ .+.+|+++|+++..++.+++++..+ ++. ++++..+ |+.++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~-Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHD-DANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEES-CHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcC-cHHHH
Confidence 6789999999999999999997 4578999999999999999999988 775 4999999 98776
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.. ...++||+|+..- . .....+++.+.+.|||||.++++.
T Consensus 125 ~~-----~~~~~fD~I~lDP-~-----~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 125 MA-----ERHRYFHFIDLDP-F-----GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HH-----HSTTCEEEEEECC-S-----SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HH-----hccCCCCEEEeCC-C-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 31 1135799999642 1 123678899999999999988775
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.91 E-value=7e-10 Score=102.11 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=83.2
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCH-------HHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSE-------LQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~-------~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
+...+...++.+|||+|||+|.+++.+++. +++|+++|+|+ .+++.|+++...+++..++++..+ |..+..
T Consensus 75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~-d~~~~l 152 (258)
T 2r6z_A 75 IAKAVNHTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFG-NAAEQM 152 (258)
T ss_dssp HHHHTTGGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEES-CHHHHH
T ss_pred HHHHhCcCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEEC-CHHHHH
Confidence 334445557789999999999999999996 88999999999 999999988877776657999999 987752
Q ss_pred cCCccccCC--CcccEEEEchhhHhhCh------------------hcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 249 PTNMTELFL--GNFSTVFICGMIEAVGH------------------DYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 249 ~~~l~~~~~--~~fD~Ivs~~~l~~~~~------------------~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+ .+.+ ++||+|++.-++.+... .+...+++.+.++.+. .+++..|..
T Consensus 153 ~----~~~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p~~ 219 (258)
T 2r6z_A 153 P----ALVKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRPRL 219 (258)
T ss_dssp H----HHHHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEETT
T ss_pred H----hhhccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcCCC
Confidence 1 1222 68999999765544211 1344555666666532 466665543
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=104.62 Aligned_cols=104 Identities=12% Similarity=0.023 Sum_probs=86.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEecCccccCc-CCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TG-CKYTGITLSELQLKYAEIKVKEAGLQDT-SDYIFVITVNCLKP-TNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~-i~~~~~~d~~~l~~-~~l~~~~~~ 258 (381)
+++.+|||++||+|.+++.++++ .| .+|+++|+++..++.++++++.+++.++ +++..+ |+.+... . ..+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~-Da~~~l~~~-----~~~ 124 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGM-EANFFLRKE-----WGF 124 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS-CHHHHHHSC-----CSS
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeC-CHHHHHHHh-----hCC
Confidence 46889999999999999999986 34 5899999999999999999999999766 999999 9876531 1 136
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+||+|+..- . .....+++.+.+.|+|||+++++.
T Consensus 125 ~fD~V~lDP----~--g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 125 GFDYVDLDP----F--GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CEEEEEECC----S--SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcEEEECC----C--cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 799999874 1 123568889999999999988775
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-09 Score=100.29 Aligned_cols=91 Identities=23% Similarity=0.273 Sum_probs=72.8
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
++.+++.+.++++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+ +++++..+ |+.+++..
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~-d~~~l~~~- 90 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKV-SYREADFL- 90 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEEC-CGGGHHHH-
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEC-CHHHHHHH-
Confidence 3456777788899999999999999999999873 6899999999999999999988776 58999999 99876410
Q ss_pred ccccCCCcccEEEEch
Q 047022 252 MTELFLGNFSTVFICG 267 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~ 267 (381)
+......+||.|++..
T Consensus 91 l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 91 LKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHTTCSCEEEEEEEC
T ss_pred HHhcCCCCCCEEEEcC
Confidence 0001115799999853
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-08 Score=104.34 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=90.8
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-------------------------------------------cCCEE
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-------------------------------------------TGCKY 210 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-------------------------------------------~~~~v 210 (381)
..++......++..|||.+||+|.+++.++.. ...++
T Consensus 180 a~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i 259 (703)
T 3v97_A 180 AAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHF 259 (703)
T ss_dssp HHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred HHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccE
Confidence 35667777788899999999999999988764 12589
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhH-hhC-hhcHHHHHHHHHhc-
Q 047022 211 TGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIE-AVG-HDYMEELFSCCESL- 287 (381)
Q Consensus 211 ~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~-~~~-~~~~~~~l~~~~~~- 287 (381)
+|+|+++.+++.|++++..+|+.+.+++.++ |+.++.+. ...++||+|+++--+. .++ ..+...+++.+.+.
T Consensus 260 ~G~Did~~av~~A~~N~~~agv~~~i~~~~~-D~~~~~~~----~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l 334 (703)
T 3v97_A 260 YGSDSDARVIQRARTNARLAGIGELITFEVK-DVAQLTNP----LPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM 334 (703)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCGGGEEEEEC-CGGGCCCS----CTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEEC-ChhhCccc----cccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999 99887521 1234899999973221 111 12345555555444
Q ss_pred --cccCceEEEEcCCC
Q 047022 288 --LAENGLSCSTVPDQ 301 (381)
Q Consensus 288 --LkpgG~~~i~~~~~ 301 (381)
+.|||.+++.+++.
T Consensus 335 k~~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 335 KNQFGGWNLSLFSASP 350 (703)
T ss_dssp HHHCTTCEEEEEESCH
T ss_pred HhhCCCCeEEEEeCCH
Confidence 45799977766653
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.1e-09 Score=104.41 Aligned_cols=123 Identities=14% Similarity=0.057 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc-------------------CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT-------------------GCKYTGITLSELQLKYAEIKVKEAGL 232 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~-------------------~~~v~gvDis~~~~~~a~~~~~~~gl 232 (381)
....+++.+...++.+|||.+||+|.++..+++.. ...++|+|+++.+++.|+.++...++
T Consensus 157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi 236 (541)
T 2ar0_A 157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 236 (541)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence 34456777777888999999999999999887651 24799999999999999999887777
Q ss_pred CC----CeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhCh------------hcHHHHHHHHHhccccCceEEE
Q 047022 233 QD----TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH------------DYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 233 ~~----~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~------------~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.. ++.+..+ |....+. ...++||+|+++--+..... .....+++.+.+.|||||++++
T Consensus 237 ~~~~~~~~~I~~g-DtL~~~~-----~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~ 310 (541)
T 2ar0_A 237 EGNLDHGGAIRLG-NTLGSDG-----ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 310 (541)
T ss_dssp CCBGGGTBSEEES-CTTSHHH-----HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccccccCCeEeC-CCccccc-----ccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence 53 2788888 8755431 13468999999754332211 1123789999999999999777
Q ss_pred EcCC
Q 047022 297 TVPD 300 (381)
Q Consensus 297 ~~~~ 300 (381)
.+|+
T Consensus 311 V~p~ 314 (541)
T 2ar0_A 311 VVPD 314 (541)
T ss_dssp EEEH
T ss_pred EecC
Confidence 7665
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.3e-08 Score=87.17 Aligned_cols=104 Identities=8% Similarity=0.026 Sum_probs=77.6
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEecCccccCc----------CC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL--QDTSDYIFVITVNCLKP----------TN 251 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl--~~~i~~~~~~d~~~l~~----------~~ 251 (381)
+..+||||||| .-++.+|+..+.+|+++|.+++..+.|+++++..|+ .++|+++.+ |+.+... +.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~g-da~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWT-DIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEEC-CCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEe-Cchhhhcccccccchhhhh
Confidence 55799999995 566777764478999999999999999999999998 789999999 8644200 00
Q ss_pred ccc-------c-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTE-------L-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~-------~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.. . ..++||+|+.-+-. ...++..+.+.|+|||++++.
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEET
T ss_pred HHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEe
Confidence 000 1 23789999997531 235666677999999998663
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-08 Score=94.04 Aligned_cols=71 Identities=13% Similarity=0.227 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCE----EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCK----YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~----v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
..++.+++.+.+.++.+|||||||+|.++..+++. +.+ |+++|+++.+++.++++. .++++++.+ |+.+
T Consensus 29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~-D~~~ 101 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIAR-LATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAG-DALT 101 (279)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHH-HCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEES-CGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHh-CCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEEC-Chhc
Confidence 45567888998899999999999999999999986 445 999999999999999883 247999999 9998
Q ss_pred cC
Q 047022 247 LK 248 (381)
Q Consensus 247 l~ 248 (381)
++
T Consensus 102 ~~ 103 (279)
T 3uzu_A 102 FD 103 (279)
T ss_dssp CC
T ss_pred CC
Confidence 87
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-08 Score=90.64 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
...++.+++.+.+.++.+|||||||+|.++..+++....+|+++|+++.+++.++++ . ..+++++.+ |+.+++
T Consensus 17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~-D~~~~~ 89 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINE-DASKFP 89 (249)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECS-CTTTCC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEc-chhhCC
Confidence 355668899999889999999999999999999986348999999999999999877 1 247999999 998886
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-08 Score=103.23 Aligned_cols=106 Identities=8% Similarity=0.000 Sum_probs=75.3
Q ss_pred CCEEEEecCCchHHHHH---HHHhcC-----------CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 185 GQEVLEIGCGWGTLAIE---IVRQTG-----------CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~---la~~~~-----------~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
+..|||+|||+|.++.. +++..+ .+|++||.|+......+.+.. +++.++|+++.+ |.+++...
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~g-d~eev~lp 487 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIES-DMRSLPGI 487 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEES-CGGGHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeC-chhhcccc
Confidence 45899999999999643 332122 389999999977765555554 789899999999 99988610
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 293 (381)
......+++|+|||-.+=.....+-.++.+..+.+.|||||+
T Consensus 488 -~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi 529 (745)
T 3ua3_A 488 -AKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTI 529 (745)
T ss_dssp -HHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCE
T ss_pred -cccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcE
Confidence 000014789999996653322223456788888999999998
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-08 Score=101.25 Aligned_cols=125 Identities=12% Similarity=-0.021 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc----------------CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT----------------GCKYTGITLSELQLKYAEIKVKEAGLQ 233 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~----------------~~~v~gvDis~~~~~~a~~~~~~~gl~ 233 (381)
+...+.+++.+...++ +|||.+||+|+++..+++.. ...++|+|+++.++..|+.++...|+.
T Consensus 231 ~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~ 309 (544)
T 3khk_A 231 KSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID 309 (544)
T ss_dssp HHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 3445577777776666 99999999999998876531 468999999999999999999888887
Q ss_pred CCeEEEEecCccccCcCCccccCCCcccEEEEchhhHh-------------------------hChh--cHHHHHHHHHh
Q 047022 234 DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEA-------------------------VGHD--YMEELFSCCES 286 (381)
Q Consensus 234 ~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~-------------------------~~~~--~~~~~l~~~~~ 286 (381)
.++.+..+ |....+ .+...+||+|+++--+.. +++. .--.+++.+.+
T Consensus 310 ~~i~i~~g-DtL~~~-----~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~ 383 (544)
T 3khk_A 310 FNFGKKNA-DSFLDD-----QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLY 383 (544)
T ss_dssp CBCCSSSC-CTTTSC-----SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHH
T ss_pred cccceecc-chhcCc-----ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHH
Confidence 66655777 765544 134578999999643321 1110 11268999999
Q ss_pred ccccCceEEEEcCCC
Q 047022 287 LLAENGLSCSTVPDQ 301 (381)
Q Consensus 287 ~LkpgG~~~i~~~~~ 301 (381)
.|+|||++.+.+|+.
T Consensus 384 ~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 384 HLAPTGSMALLLANG 398 (544)
T ss_dssp TEEEEEEEEEEEETH
T ss_pred HhccCceEEEEecch
Confidence 999999988777763
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.67 E-value=8.2e-09 Score=94.78 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=75.7
Q ss_pred HHHHHHcCCCCC--CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-------C-CCCCeEEEEecC
Q 047022 174 SVLIEKVKLVKG--QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-------G-LQDTSDYIFVIT 243 (381)
Q Consensus 174 ~~l~~~l~~~~~--~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-------g-l~~~i~~~~~~d 243 (381)
+.+++.+.++++ .+|||+|||+|..++.++.. +++|+++|+++.+.+.+++.+... + +..+++++.+ |
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~-D 153 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA-S 153 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES-C
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC-C
Confidence 456777777788 99999999999999999996 889999999999877776665432 1 2247999999 9
Q ss_pred ccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCc
Q 047022 244 VNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG 292 (381)
Q Consensus 244 ~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG 292 (381)
..+.-+ .+ .++||+|++.-++.+-.. ...+++..++|++.+
T Consensus 154 ~~~~L~----~~-~~~fDvV~lDP~y~~~~~---saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 154 SLTALT----DI-TPRPQVVYLDPMFPHKQK---SALVKKEMRVFQSLV 194 (258)
T ss_dssp HHHHST----TC-SSCCSEEEECCCCCCCCC--------HHHHHHHHHS
T ss_pred HHHHHH----hC-cccCCEEEEcCCCCCccc---chHHHHHHHHHHHhh
Confidence 877431 12 247999999877755321 234444445554443
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.8e-08 Score=96.84 Aligned_cols=77 Identities=10% Similarity=0.052 Sum_probs=65.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc--CCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA--GLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~--gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.+|.+|||+|||+|..++.+++. +.+|+++|+|+.+++.|++++... |+ ++++++.+ |+.+.-+ ....++|
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~-Da~~~L~----~~~~~~f 164 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTG-DFKEYLP----LIKTFHP 164 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEES-CGGGSHH----HHHHHCC
T ss_pred CCCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEEC-cHHHhhh----hccCCCc
Confidence 45899999999999999999985 889999999999999999999987 77 58999999 9887420 0112579
Q ss_pred cEEEEc
Q 047022 261 STVFIC 266 (381)
Q Consensus 261 D~Ivs~ 266 (381)
|+|++.
T Consensus 165 DvV~lD 170 (410)
T 3ll7_A 165 DYIYVD 170 (410)
T ss_dssp SEEEEC
T ss_pred eEEEEC
Confidence 999984
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-07 Score=89.84 Aligned_cols=155 Identities=15% Similarity=0.077 Sum_probs=96.7
Q ss_pred CCEEEEecCCchHHHHHHHHh------------------cCCEEEEEcCC-----------HHHHHHHHHHHHHcCCCCC
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ------------------TGCKYTGITLS-----------ELQLKYAEIKVKEAGLQDT 235 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~------------------~~~~v~gvDis-----------~~~~~~a~~~~~~~gl~~~ 235 (381)
..+|+|+||++|..++.+... +..+|...|+. +.+.+.+++ ..|-..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 478999999999999887654 23568888987 433333222 2222123
Q ss_pred eEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChh-------------------------------------cHH
Q 047022 236 SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD-------------------------------------YME 278 (381)
Q Consensus 236 i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~-------------------------------------~~~ 278 (381)
.-|..+ .....-.. -++.+++|+|+|+.++|++.+. |+.
T Consensus 130 ~~f~~g-vpgSFy~r---lfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~ 205 (384)
T 2efj_A 130 SCLIGA-MPGSFYSR---LFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFT 205 (384)
T ss_dssp SEEEEE-CCSCTTSC---CSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHH
T ss_pred ceEEEe-cchhhhhc---cCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHH
Confidence 455555 43332100 1567999999999999997532 122
Q ss_pred HHHHHHHhccccCceEEEEcCCCCCC--CCC---Cchh--------------hhhhhccCCCCCCCHHHHHHHHHhcCCc
Q 047022 279 ELFSCCESLLAENGLSCSTVPDQCYD--EHS---LGPG--------------FIKEYIFPSGCLPSLRRVTSAMTSSSRL 339 (381)
Q Consensus 279 ~~l~~~~~~LkpgG~~~i~~~~~~~~--~~~---~~~~--------------~i~~yi~pgg~lp~~~~~~~~l~~~~Gf 339 (381)
.+|+...+.|+|||+++++....... ... .... -+..+..|. +.|+.+|+...++++.+|
T Consensus 206 ~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~-y~ps~~E~~~~le~~g~F 284 (384)
T 2efj_A 206 TFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPI-YAPSTEEVKRIVEEEGSF 284 (384)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSB-CCCCHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcc-cCCCHHHHHHHHHHcCCc
Confidence 34777799999999988887665433 100 0000 011122343 679999998777765578
Q ss_pred EEEEEEec
Q 047022 340 CVEHLENI 347 (381)
Q Consensus 340 ~v~~~~~~ 347 (381)
.+..++.+
T Consensus 285 ~i~~le~~ 292 (384)
T 2efj_A 285 EILYLETF 292 (384)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 98877654
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-07 Score=94.88 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=91.7
Q ss_pred HHHHHHHHcC----CCCCCEEEEecCCchHHHHHHHHhc----CCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEec
Q 047022 172 KVSVLIEKVK----LVKGQEVLEIGCGWGTLAIEIVRQT----GCKYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVI 242 (381)
Q Consensus 172 ~~~~l~~~l~----~~~~~~VLDiGcG~G~~~~~la~~~----~~~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~ 242 (381)
..+.+++.+. ..++.+|||.+||+|+++..+++.. ...++|+|+++.++..|+.++...|+. +++.+..+
T Consensus 205 Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~g- 283 (542)
T 3lkd_A 205 VAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNA- 283 (542)
T ss_dssp HHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEES-
T ss_pred HHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEec-
Confidence 3344555544 3578899999999999999888762 578999999999999999999888875 46889999
Q ss_pred Ccccc--CcCCccccCCCcccEEEEchhhHh-------------------hCh-h-cHHHHHHHHHhccc-cCceEEEEc
Q 047022 243 TVNCL--KPTNMTELFLGNFSTVFICGMIEA-------------------VGH-D-YMEELFSCCESLLA-ENGLSCSTV 298 (381)
Q Consensus 243 d~~~l--~~~~l~~~~~~~fD~Ivs~~~l~~-------------------~~~-~-~~~~~l~~~~~~Lk-pgG~~~i~~ 298 (381)
|.... + .....+||+|+++--+.. +++ . .--.++..+.+.|+ |||++.+.+
T Consensus 284 DtL~~d~p-----~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 284 DTLDEDWP-----TQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp CTTTSCSC-----CSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred ceeccccc-----ccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 87665 2 124578999998632210 110 0 01258999999999 999988777
Q ss_pred CCC
Q 047022 299 PDQ 301 (381)
Q Consensus 299 ~~~ 301 (381)
|+.
T Consensus 359 P~g 361 (542)
T 3lkd_A 359 PHG 361 (542)
T ss_dssp ETH
T ss_pred cch
Confidence 764
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.6e-08 Score=87.30 Aligned_cols=120 Identities=16% Similarity=0.073 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..|+..+.++..++++.+|||+|||+|+++..++++.++ .++++|++..+....... ...+ .++..... +.....
T Consensus 60 A~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~-~~dv~~ 135 (277)
T 3evf_A 60 TAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKD-KTDIHR 135 (277)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEEC-SCCTTT
T ss_pred HHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEec-cceehh
Confidence 456777888877889999999999999999999876443 688888874421000000 0001 13444555 543332
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhc-----HHHHHHHHHhccccC-ceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDY-----MEELFSCCESLLAEN-GLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~-----~~~~l~~~~~~Lkpg-G~~~i~~~~ 300 (381)
+..++||+|+|..+.. .+... ...+++.+.++|+|| |.+++.+..
T Consensus 136 ------l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 136 ------LEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp ------SCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred ------cCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 4567899999976444 33211 123478889999999 998887654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-08 Score=91.45 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCE--EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCK--YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~--v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
...+.+++.+.+.++++|||||||+|.++. +++ +.+ |+++|+++.+++.++++.... ++++++.+ |+.+++
T Consensus 8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~-D~~~~~ 80 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQ-DAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECS-CGGGCC
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEEC-chhhCC
Confidence 456688888888999999999999999999 654 466 999999999999999876432 47999999 998876
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-07 Score=86.17 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=84.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHc--C-C-CCCeEEEEecCccccCcCCccccCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEA--G-L-QDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~--g-l-~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
+...+||-||.|.|..+.++++++ ..+|+.+||+++.++.+++.+... + + .+|++++.+ |....-. ...
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~-Dg~~~l~-----~~~ 155 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVID-DGVNFVN-----QTS 155 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES-CTTTTTS-----CSS
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEec-hHHHHHh-----hcc
Confidence 455799999999999999999874 468999999999999999987542 2 1 358999999 9887642 245
Q ss_pred CcccEEEEchh-----hHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 258 GNFSTVFICGM-----IEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 258 ~~fD~Ivs~~~-----l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
++||+|+.-.. -.++ .-.++++.|+++|+|||+++....
T Consensus 156 ~~yDvIi~D~~dp~~~~~~L---~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 156 QTFDVIISDCTDPIGPGESL---FTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp CCEEEEEESCCCCCCTTCCS---SCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCEEEEeCCCcCCCchhh---cCHHHHHHHHHHhCCCCEEEEecC
Confidence 78999997521 1111 236899999999999999877543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.1e-07 Score=85.61 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=90.9
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCC-----CCeEEEEecCccccC
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQ-----DTSDYIFVITVNCLK 248 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~-----~~i~~~~~~d~~~l~ 248 (381)
.....+.++||++|||++||.|+-+.++++. .+..|+++|+++.-++..++++...+.. .++.+... |.+.++
T Consensus 139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~-D~~~~~ 217 (359)
T 4fzv_A 139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSW-DGRKWG 217 (359)
T ss_dssp HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECC-CGGGHH
T ss_pred HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeC-chhhcc
Confidence 3455678899999999999999999999886 2347999999999999999999877653 46788888 887764
Q ss_pred cCCccccCCCcccEEEE----chh----hHh-------hChh-------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 249 PTNMTELFLGNFSTVFI----CGM----IEA-------VGHD-------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs----~~~----l~~-------~~~~-------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
....+.||.|++ ++. +.. ...+ -...+++.+.++|||||+++.++..-.
T Consensus 218 -----~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 218 -----ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp -----HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred -----hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 124578999995 221 110 0000 123678889999999999888776644
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.7e-08 Score=87.72 Aligned_cols=120 Identities=14% Similarity=0.055 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.-|+..+.++..++++.+|||+|||+|+++.+++++.+ ..|+|+|++..+...+... . ....++..... +.....
T Consensus 76 AfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~--~~g~~ii~~~~-~~dv~~ 151 (282)
T 3gcz_A 76 SAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-T--TLGWNLIRFKD-KTDVFN 151 (282)
T ss_dssp HHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-C--BTTGGGEEEEC-SCCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-c--cCCCceEEeeC-Ccchhh
Confidence 35677778887888999999999999999999987534 3689999986532211100 0 01123333333 322111
Q ss_pred cCCccccCCCcccEEEEchhhHhhChh-----cHHHHHHHHHhccccC--ceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHD-----YMEELFSCCESLLAEN--GLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~-----~~~~~l~~~~~~Lkpg--G~~~i~~~~ 300 (381)
+...++|+|+|..+.. .+.. ....+++-+.++|+|| |.+++-+..
T Consensus 152 ------l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 152 ------MEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp ------SCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred ------cCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 3457899999975544 3321 1123577788999999 998887654
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-06 Score=80.74 Aligned_cols=109 Identities=19% Similarity=0.138 Sum_probs=71.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHh--------cC-----CEEEEEcCCH---HHHH-----------HHHHHHHHc-----
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ--------TG-----CKYTGITLSE---LQLK-----------YAEIKVKEA----- 230 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~--------~~-----~~v~gvDis~---~~~~-----------~a~~~~~~~----- 230 (381)
++..+|||||||+|..++.+++. +. .+++++|..| +++. .+++.+...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 45579999999999988876542 21 4899999876 4443 555555431
Q ss_pred -----CCC---CCeEEEEecCccccCcCCccccCC---CcccEEEEchh-hHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 231 -----GLQ---DTSDYIFVITVNCLKPTNMTELFL---GNFSTVFICGM-IEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 231 -----gl~---~~i~~~~~~d~~~l~~~~l~~~~~---~~fD~Ivs~~~-l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.+. .++++..+ |+.+.-+. ... ..||+|+.... -...++-....+|+.+.++|+|||+++.
T Consensus 139 g~~r~~~~~~~~~l~l~~G-Da~~~l~~----~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFG-DINELISQ----LDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEES-CHHHHGGG----SCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEEC-cHHHHHhh----cccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 011 35778999 98774211 111 37999998532 1111111246899999999999999763
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.35 E-value=5.3e-07 Score=86.33 Aligned_cols=158 Identities=11% Similarity=0.102 Sum_probs=98.8
Q ss_pred CCEEEEecCCchHHHHHHHHh-----------------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ-----------------TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~-----------------~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
..+|+|+||++|..++.+... +..+|...|+..+....+-+.+....-..+..|..+ .....
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~g-vpgSF 130 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFING-VPGSF 130 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEE-EESCS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEe-cchhh
Confidence 367999999999877655432 235789999998888877766542110002344444 32221
Q ss_pred CcCCccccCCCcccEEEEchhhHhhCh-------------------------------hcHHHHHHHHHhccccCceEEE
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGH-------------------------------DYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~~~i 296 (381)
-.. -++.+++|+|+|+.++|++.+ +|+..+|+...+.|+|||++++
T Consensus 131 y~r---lfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl 207 (359)
T 1m6e_X 131 YGR---LFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SSC---CSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hhc---cCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 100 157799999999999998753 1355679999999999999887
Q ss_pred EcCCCCCCCC-CC----chhhhh------------------hhccCCCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 297 TVPDQCYDEH-SL----GPGFIK------------------EYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 297 ~~~~~~~~~~-~~----~~~~i~------------------~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
+......... .. ..+.+. .+..| .+.|+.+|+...++++.+|.+...+.+
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P-~y~ps~~E~~~~ie~~G~F~i~~~e~~ 280 (359)
T 1m6e_X 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIP-QYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCC-CBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCC-ccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 7654332210 00 011111 12233 257899999877776546777766543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-06 Score=79.05 Aligned_cols=121 Identities=8% Similarity=-0.005 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHh------cCCEEEEEcCCHH-----------------------
Q 047022 169 QIRKVSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQ------TGCKYTGITLSEL----------------------- 218 (381)
Q Consensus 169 q~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~------~~~~v~gvDis~~----------------------- 218 (381)
+...+..+++.+. ......|||+|+..|..++.++.. .+.+|+++|..+.
T Consensus 90 r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~ 169 (282)
T 2wk1_A 90 RLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSV 169 (282)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccccccc
Confidence 3444555555543 123349999999999999888754 2678999996421
Q ss_pred ---HHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 219 ---QLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 219 ---~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
.++.++++++..|+. ++|+++.+ |+.+.-+ ....++||+|+.-.-.. +....+++.+...|+|||++
T Consensus 170 ~~~~~~~ar~n~~~~gl~~~~I~li~G-da~etL~----~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiI 240 (282)
T 2wk1_A 170 LAVSEEEVRRNFRNYDLLDEQVRFLPG-WFKDTLP----TAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYV 240 (282)
T ss_dssp HCCCHHHHHHHHHHTTCCSTTEEEEES-CHHHHST----TCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEE
T ss_pred chhHHHHHHHHHHHcCCCcCceEEEEe-CHHHHHh----hCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEE
Confidence 367789999999984 89999999 9876432 23457899999874321 23467899999999999998
Q ss_pred EEEc
Q 047022 295 CSTV 298 (381)
Q Consensus 295 ~i~~ 298 (381)
++..
T Consensus 241 v~DD 244 (282)
T 2wk1_A 241 IVDD 244 (282)
T ss_dssp EESS
T ss_pred EEcC
Confidence 8753
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=80.87 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=69.9
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
++.+++.+.++++..+||.+||.|+.+..++++ +++|+|+|.++.+++.|++ +.. ++++++.+ ++.++... +
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~-~f~~l~~~-L 82 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQG-NFRHLKRH-L 82 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEES-CGGGHHHH-H
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEEC-CcchHHHH-H
Confidence 456788888899999999999999999999997 8899999999999999988 533 48999999 99887410 1
Q ss_pred cccCCCcccEEEEc
Q 047022 253 TELFLGNFSTVFIC 266 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~ 266 (381)
.....+++|.|++.
T Consensus 83 ~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 83 AALGVERVDGILAD 96 (285)
T ss_dssp HHTTCSCEEEEEEE
T ss_pred HHcCCCCcCEEEeC
Confidence 11223579999974
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.6e-06 Score=88.63 Aligned_cols=113 Identities=14% Similarity=0.142 Sum_probs=77.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcC----CEEEEEcCCHHHHHHHH--HHHHHcCCCC---CeEEEEecCccccCcCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTG----CKYTGITLSELQLKYAE--IKVKEAGLQD---TSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~----~~v~gvDis~~~~~~a~--~~~~~~gl~~---~i~~~~~~d~~~l~~~~l~ 253 (381)
.++.+|||.|||+|.++..++++.+ .+++|+|+++.+++.|+ .++..+++.. ...+... |+.....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~d-D~L~~~~---- 394 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGE-DVCSLNP---- 394 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECC-CGGGCCG----
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEec-chhcccc----
Confidence 4688999999999999999988642 47999999999999994 3333212211 2345555 6655331
Q ss_pred ccCCCcccEEEEchhhHh------------------hC---h------hcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 254 ELFLGNFSTVFICGMIEA------------------VG---H------DYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~------------------~~---~------~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
...++||+|+++--+.. .+ . .-...+++.+.+.|+|||++++.+|+.
T Consensus 395 -~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 395 -EDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp -GGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred -cccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 23478999999543200 00 0 013457899999999999988887764
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.4e-06 Score=69.60 Aligned_cols=94 Identities=7% Similarity=0.007 Sum_probs=63.7
Q ss_pred HHHHHHcCCCCCCEEEEecCCch-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWG-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
+.+.+.. .++.+|||||||.| ..+..++++.|..|+++|+++..++ ++.. |+.+...+
T Consensus 27 eYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~d-DiF~P~~~-- 85 (153)
T 2k4m_A 27 VYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRD-DITSPRME-- 85 (153)
T ss_dssp HHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECC-CSSSCCHH--
T ss_pred HHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEc-cCCCCccc--
Confidence 3444444 35679999999999 6999999856999999999987443 6666 88764410
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.-+.||+|.+. =|+.++...+.++.+.. |.-++|..
T Consensus 86 ---~Y~~~DLIYsi-----rPP~El~~~i~~lA~~v--~adliI~p 121 (153)
T 2k4m_A 86 ---IYRGAALIYSI-----RPPAEIHSSLMRVADAV--GARLIIKP 121 (153)
T ss_dssp ---HHTTEEEEEEE-----SCCTTTHHHHHHHHHHH--TCEEEEEC
T ss_pred ---ccCCcCEEEEc-----CCCHHHHHHHHHHHHHc--CCCEEEEc
Confidence 01489999887 33445566665555543 44466543
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=7.6e-06 Score=73.75 Aligned_cols=114 Identities=15% Similarity=0.100 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE----ecCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIF----VITV 244 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~----~~d~ 244 (381)
.-|+..|-++--++|+.+|||+||+.|+++.++++..+. .|.|.++.... . ..+....+..+.++. . |+
T Consensus 59 ayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P~~~~~~Gv~~i~~~~G~-Df 132 (269)
T 2px2_A 59 TAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEPMLMQSYGWNIVTMKSGV-DV 132 (269)
T ss_dssp HHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCCCCCCSTTGGGEEEECSC-CG
T ss_pred HHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCCCcccCCCceEEEeeccC-Cc
Confidence 355666777666789999999999999999999886332 34455444320 0 000000001233333 5 77
Q ss_pred cccCcCCccccCCCcccEEEEch-------hhHhhChhcHHHHHHHHHhccccCc-eEEEEcCC
Q 047022 245 NCLKPTNMTELFLGNFSTVFICG-------MIEAVGHDYMEELFSCCESLLAENG-LSCSTVPD 300 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~-------~l~~~~~~~~~~~l~~~~~~LkpgG-~~~i~~~~ 300 (381)
.++. ..++|+|+|-. ..+|. ... .++.-+.++|+||| .+++-+..
T Consensus 133 ~~~~--------~~~~DvVLSDMAPnSG~~~vD~~--Rs~-~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 133 FYKP--------SEISDTLLCDIGESSPSAEIEEQ--RTL-RILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp GGSC--------CCCCSEEEECCCCCCSCHHHHHH--HHH-HHHHHHHHHHTTCCSEEEEEESC
T ss_pred cCCC--------CCCCCEEEeCCCCCCCccHHHHH--HHH-HHHHHHHHHhhcCCcEEEEEECC
Confidence 7654 35799999953 22332 112 26777889999999 77777655
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=7.7e-06 Score=78.42 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=78.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc--C-C----CCCeEEEEecCccccCcCCccccC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA--G-L----QDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~--g-l----~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
+..+||-||.|.|..+.++.+++..+|+.+||+++.++.|++.+... + + .++++++.+ |....-... ...
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~-Da~~fl~~~--~~~ 281 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE-DCIPVLKRY--AKE 281 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES-CHHHHHHHH--HHH
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH-HHHHHHHhh--hhc
Confidence 56799999999999999999876679999999999999999975321 1 1 135889999 886532000 002
Q ss_pred CCcccEEEEchh-------hHhhC-hhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGM-------IEAVG-HDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~-------l~~~~-~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.++||+|+.-.. ..... .....++++.++++|+|||+++.-
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 367999997521 11111 013468899999999999997764
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=4.5e-06 Score=76.85 Aligned_cols=119 Identities=18% Similarity=0.072 Sum_probs=72.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
-|+..+.++--++++.+|||+||++|+++..++++.+ ..|+|+|+...+...... .. ....++..... +.....
T Consensus 68 ~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~--~~~~~iv~~~~-~~di~~- 142 (300)
T 3eld_A 68 AKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQ--TLGWNIVKFKD-KSNVFT- 142 (300)
T ss_dssp HHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CC--BTTGGGEEEEC-SCCTTT-
T ss_pred HHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cc--ccCCceEEeec-Cceeee-
Confidence 4566666663356899999999999999999997634 378899997542110000 00 00112332222 222111
Q ss_pred CCccccCCCcccEEEEchhhHhhChhc-----HHHHHHHHHhccccC-ceEEEEcCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDY-----MEELFSCCESLLAEN-GLSCSTVPD 300 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~-----~~~~l~~~~~~Lkpg-G~~~i~~~~ 300 (381)
+..+.+|+|+|..+.. .+... ...+++-+.++|+|| |.+++.+..
T Consensus 143 -----l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 143 -----MPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp -----SCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred -----cCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 3347899999965443 33211 134477788999999 998887654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.1e-05 Score=72.07 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..|+..+.++..++++.+|||+||++|+++.+++...++ +|.|+|+...-.+.= ..+...++. -|.+..+.|++.++
T Consensus 80 ~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~-lV~~~~~~Dv~~l~ 157 (321)
T 3lkz_A 80 TAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWN-IVTMKSGVDVFYRP 157 (321)
T ss_dssp HHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGG-GEEEECSCCTTSSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCc-ceEEEeccCHhhCC
Confidence 456777888877889999999999999999998887665 599999976511000 000011221 36666654776666
Q ss_pred cCCccccCCCcccEEEEchhhHhhChh-----cHHHHHHHHHhccccC-ceEEEEcCCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHD-----YMEELFSCCESLLAEN-GLSCSTVPDQ 301 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~-----~~~~~l~~~~~~Lkpg-G~~~i~~~~~ 301 (381)
+ .++|.|+|.-. +.-+.. ..-.+|+-+.+.|++| |-+++-+..+
T Consensus 158 ~--------~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 158 S--------ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp C--------CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred C--------CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 2 56999998533 333221 1223677778999999 7777766543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-05 Score=76.21 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=65.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+++|++|||+||++|+++..++++ +++|++||+.+- -... .. .++|++..+ |.....+ ..++||
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~l-~~~l----~~---~~~V~~~~~-d~~~~~~------~~~~~D 272 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGPM-AQSL----MD---TGQVTWLRE-DGFKFRP------TRSNIS 272 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSCC-CHHH----HT---TTCEEEECS-CTTTCCC------CSSCEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhhc-Chhh----cc---CCCeEEEeC-ccccccC------CCCCcC
Confidence 579999999999999999999996 889999998742 1211 11 147999999 9888763 347899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAEN 291 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg 291 (381)
.|+|-.+ .++....+.+.+.|..+
T Consensus 273 ~vvsDm~------~~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 273 WMVCDMV------EKPAKVAALMAQWLVNG 296 (375)
T ss_dssp EEEECCS------SCHHHHHHHHHHHHHTT
T ss_pred EEEEcCC------CChHHhHHHHHHHHhcc
Confidence 9999633 23456666666666655
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=6.1e-05 Score=66.93 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..|+..+.++..++++.+|||+||++|+++.+++...++ +|.++|+-..-.+.= ......|++ .++|..+.|+..++
T Consensus 64 ~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn-~v~fk~gvDv~~~~ 141 (267)
T 3p8z_A 64 SAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWN-IVKLMSGKDVFYLP 141 (267)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTT-SEEEECSCCGGGCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcC-ceEEEeccceeecC
Confidence 456777788778899999999999999999999887565 699999976522100 001123443 68888876766665
Q ss_pred cCCccccCCCcccEEEEchhhHhhCh-----hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGH-----DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~-----~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++|.|+|.-. +.-+. ...-.+|+-+.+.|++ |-+++-+-.
T Consensus 142 --------~~~~DtllcDIg-eSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 142 --------PEKCDTLLCDIG-ESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp --------CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred --------CccccEEEEecC-CCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence 267999999521 11111 1122367777899998 676666544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.91 E-value=3.6e-05 Score=71.91 Aligned_cols=59 Identities=22% Similarity=0.208 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG 231 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~g 231 (381)
..+..+++... .+++.|||++||+|..+..+++ .|.+++|+|+++.+++.|++++....
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~-~g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAAR-WGRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 44556666665 6899999999999999999887 59999999999999999999987653
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.88 E-value=8.7e-05 Score=74.94 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=89.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--------------CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--------------GCKYTGITLSELQLKYAEIKVKEAGLQDT 235 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--------------~~~v~gvDis~~~~~~a~~~~~~~gl~~~ 235 (381)
+..++.+++.+...++.+|+|-+||+|++...+.++. ...+.|+|+++.+...|+-++.-.|.. .
T Consensus 203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~ 281 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-Y 281 (530)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-C
T ss_pred HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-c
Confidence 4556678888888899999999999999998876531 246999999999999999888777764 4
Q ss_pred eEEEEecCccccCcCCccccCCCcccEEEEchhhH---------h----hChhc-HHHHHHHHHhccc-------cCceE
Q 047022 236 SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIE---------A----VGHDY-MEELFSCCESLLA-------ENGLS 294 (381)
Q Consensus 236 i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~---------~----~~~~~-~~~~l~~~~~~Lk-------pgG~~ 294 (381)
..+..+ |....+... .....+||+|+++--+. . .+..+ -..++..+.+.|| |||++
T Consensus 282 ~~I~~~-dtL~~~~~~--~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~ 358 (530)
T 3ufb_A 282 PRIDPE-NSLRFPLRE--MGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRA 358 (530)
T ss_dssp CEEECS-CTTCSCGGG--CCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEE
T ss_pred cccccc-ccccCchhh--hcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceE
Confidence 566777 765433110 01235799999964331 0 11011 2346777888886 79998
Q ss_pred EEEcCC
Q 047022 295 CSTVPD 300 (381)
Q Consensus 295 ~i~~~~ 300 (381)
.+.+|+
T Consensus 359 avVlP~ 364 (530)
T 3ufb_A 359 AVVVPN 364 (530)
T ss_dssp EEEEEH
T ss_pred EEEecc
Confidence 777765
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0004 Score=63.38 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG 231 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~g 231 (381)
..+..+++... .+++.|||..||+|+.+..+.+ .|.+++|+|+++.+++.+++++...+
T Consensus 200 ~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~-~gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 34456666554 7899999999999999999887 59999999999999999999987654
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0037 Score=59.19 Aligned_cols=162 Identities=12% Similarity=0.101 Sum_probs=102.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC--------------------CCCCeEEEEe
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAG--------------------LQDTSDYIFV 241 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~g--------------------l~~~i~~~~~ 241 (381)
.+...|+.+|||.......+... .+.+++-||. |+.++.-++.+...+ .+++.+++.+
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 35578999999999999888764 4677888888 778877777766542 1357889988
Q ss_pred cCccccCc-CC-cccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE-EEcCCCCCCCCCCchhhh----
Q 047022 242 ITVNCLKP-TN-MTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC-STVPDQCYDEHSLGPGFI---- 313 (381)
Q Consensus 242 ~d~~~l~~-~~-l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~-i~~~~~~~~~~~~~~~~i---- 313 (381)
|+++..- +. +... ..+...++++-.++.+++.+....+++.+.+.. |+|.++ +..... ..........+
T Consensus 175 -DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~-~~~~~~fg~~m~~~l 251 (334)
T 1rjd_A 175 -DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG-SQPNDRFGAIMQSNL 251 (334)
T ss_dssp -CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC-CSTTCCHHHHHHHHH
T ss_pred -CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC-CCCcchHHHHHHHHh
Confidence 9887420 00 0111 235678899999999999888999999999887 677654 332111 00000111111
Q ss_pred hh---hccCCC-CCCCHHHHHHHHHhcCCcEEEEEEecchhH
Q 047022 314 KE---YIFPSG-CLPSLRRVTSAMTSSSRLCVEHLENIETHY 351 (381)
Q Consensus 314 ~~---yi~pgg-~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y 351 (381)
.+ -.+++. ..|++.+..+.+. ++||. ...++..-|
T Consensus 252 ~~~rg~~l~~~~~y~s~~~~~~rl~-~~Gf~--~a~d~~~~y 290 (334)
T 1rjd_A 252 KESRNLEMPTLMTYNSKEKYASRWS-AAPNV--IVNDMWEIF 290 (334)
T ss_dssp HHHHCCCCTTTTTTCSHHHHHGGGT-TSSEE--EEEEHHHHH
T ss_pred hcccCCcccccccCCCHHHHHHHHH-HCCCC--cccCHHHHH
Confidence 11 122332 3578887755554 68997 455554444
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00085 Score=64.35 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=71.7
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCC
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTN 251 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~ 251 (381)
.+.+...+++|++||-+|||. |.++..+++..|+ +|+++|.+++.++.+++. |.. .+. |+.+.. .+.
T Consensus 181 al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi---~~~~~~~~~~ 250 (371)
T 1f8f_A 181 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVI---NSKTQDPVAA 250 (371)
T ss_dssp HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEE---ETTTSCHHHH
T ss_pred HHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEe---cCCccCHHHH
Confidence 344667788999999999986 8899999988888 799999999988888654 321 112 221110 000
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.....+.+|+|+.. ++. ...++.+.++|+|+|++++.
T Consensus 251 ~~~~~~gg~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 251 IKEITDGGVNFALES-----TGS---PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp HHHHTTSCEEEEEEC-----SCC---HHHHHHHHHTEEEEEEEEEC
T ss_pred HHHhcCCCCcEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEe
Confidence 001122379999876 332 45678889999999997654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0015 Score=59.98 Aligned_cols=109 Identities=14% Similarity=0.150 Sum_probs=70.0
Q ss_pred HHHHHHHHHc-----CCCCCCEEEEecC------CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE
Q 047022 171 RKVSVLIEKV-----KLVKGQEVLEIGC------GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYI 239 (381)
Q Consensus 171 ~~~~~l~~~l-----~~~~~~~VLDiGc------G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~ 239 (381)
.|+.++|+.+ .++.+++|||+|+ -+|...+.-....|+.|+++|+.+-.. +.-.++
T Consensus 91 ~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-------------da~~~I 157 (344)
T 3r24_A 91 AKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-------------DADSTL 157 (344)
T ss_dssp HHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-------------SSSEEE
T ss_pred HHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-------------CCCeEE
Confidence 4455666655 3457899999996 678743222211246999999987421 112458
Q ss_pred EecCccccCcCCccccCCCcccEEEEchhhH---hhChh------cHHHHHHHHHhccccCceEEEEcCC
Q 047022 240 FVITVNCLKPTNMTELFLGNFSTVFICGMIE---AVGHD------YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 240 ~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~---~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++ |..... ..++||+|+|-..-. +.... -.+.++.-+.+.|+|||.+++-+..
T Consensus 158 qG-D~~~~~-------~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQ 219 (344)
T 3r24_A 158 IG-DCATVH-------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 219 (344)
T ss_dssp ES-CGGGEE-------ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred Ec-cccccc-------cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEec
Confidence 89 987654 348899999943211 11111 1456677788999999999887643
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00051 Score=64.60 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=67.5
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
++.+++.+.++||..++|..||.|+.+..+++. +.++|+|+|.++++++.++ ++ ..++++++.+ ++.++...
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~-nF~~l~~~ 119 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHG-PFSALGEY 119 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEES-CGGGHHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeC-CHHHHHHH
Confidence 457788899999999999999999999999987 4579999999999999884 43 1368999999 98876310
Q ss_pred CccccC-CCcccEEEEch
Q 047022 251 NMTELF-LGNFSTVFICG 267 (381)
Q Consensus 251 ~l~~~~-~~~fD~Ivs~~ 267 (381)
+.... .+++|.|+...
T Consensus 120 -L~~~g~~~~vDgILfDL 136 (347)
T 3tka_A 120 -VAERDLIGKIDGILLDL 136 (347)
T ss_dssp -HHHTTCTTCEEEEEEEC
T ss_pred -HHhcCCCCcccEEEECC
Confidence 00001 13689988643
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.001 Score=63.34 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCCC------CCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEec
Q 047022 170 IRKVSVLIEKVKLVK------GQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~------~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~ 242 (381)
.+.++.|++.+.+.+ ++.|||||.|.|.++..++++ ...+|+++++++..+...++.. . .++++++.+
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~- 112 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKR- 112 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECS-
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEEC-
Confidence 355678888888764 589999999999999999986 3569999999999999888876 2 258999999
Q ss_pred Ccccc
Q 047022 243 TVNCL 247 (381)
Q Consensus 243 d~~~l 247 (381)
|+.++
T Consensus 113 D~l~~ 117 (353)
T 1i4w_A 113 DPYDW 117 (353)
T ss_dssp CTTCH
T ss_pred Cccch
Confidence 98554
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0011 Score=62.85 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=71.2
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+....+++|++||-+|+|. |.++..+++..|++|++++.+++.++.+++. |.. .+. . +...+.
T Consensus 168 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v~-~-~~~~~~------ 232 (348)
T 3two_A 168 PLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM----GVK---HFY-T-DPKQCK------ 232 (348)
T ss_dssp HHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT----TCS---EEE-S-SGGGCC------
T ss_pred HHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc----CCC---eec-C-CHHHHh------
Confidence 34556888999999999986 8899999988899999999999988877653 432 122 4 544433
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+|+|+.. ++. ...++.+.++|+|+|++++.
T Consensus 233 ---~~~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 233 ---EELDFIIST-----IPT---HYDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp ---SCEEEEEEC-----CCS---CCCHHHHHTTEEEEEEEEEC
T ss_pred ---cCCCEEEEC-----CCc---HHHHHHHHHHHhcCCEEEEE
Confidence 379999975 332 22466778999999997654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0013 Score=62.72 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=70.1
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecC---ccccCcCC
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT---VNCLKPTN 251 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d---~~~l~~~~ 251 (381)
++...+++|++||-+|+|. |.++..+++..|+ +|+++|.+++.++.+++. |.. .+... + ..+.. +.
T Consensus 164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~-~~~~~~~~~-~~ 234 (356)
T 1pl8_A 164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQI-SKESPQEIA-RK 234 (356)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEEC-SSCCHHHHH-HH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEEcC-cccccchHH-HH
Confidence 3667888999999999986 8899999988888 999999999888877643 432 22221 1 00110 00
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.....+.+|+|+.. ++. ...++...++|+|+|+++..
T Consensus 235 i~~~~~~g~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 235 VEGQLGCKPEVTIEC-----TGA---EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHHHTSCCSEEEEC-----SCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHhCCCCCEEEEC-----CCC---hHHHHHHHHHhcCCCEEEEE
Confidence 000111569999976 432 44577788999999997654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0027 Score=61.49 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=70.9
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc--CCc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP--TNM 252 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~--~~l 252 (381)
++...+++|++||-+|||. |.++..+++..|+ +|+++|.+++.++.+++. |. +++ |+.+... +.+
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga----~~i---~~~~~~~~~~~~ 246 (398)
T 2dph_A 178 CVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----GF----ETI---DLRNSAPLRDQI 246 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----TC----EEE---ETTSSSCHHHHH
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CC----cEE---cCCCcchHHHHH
Confidence 3667889999999999987 8999999988888 999999999988877542 32 222 2222110 000
Q ss_pred ccc-CCCcccEEEEchhhHhhC------hhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TEL-FLGNFSTVFICGMIEAVG------HDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~-~~~~fD~Ivs~~~l~~~~------~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
... ....+|+|+-.-.-.... .......++.+.++|+|+|++++.
T Consensus 247 ~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 247 DQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp HHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred HHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 001 123699998763211000 001234688889999999996643
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0036 Score=60.03 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=72.4
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~ 253 (381)
++...+++|++||-+|+|. |.++..+++..|+ +|+++|.+++..+.+++. |.. .+ . |+.+... +.+.
T Consensus 175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~v--i-~~~~~~~~~~i~ 244 (370)
T 4ej6_A 175 VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT---AT--V-DPSAGDVVEAIA 244 (370)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EE--E-CTTSSCHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EE--E-CCCCcCHHHHHH
Confidence 4677889999999999986 8899999988888 999999999988877764 432 11 1 2221110 0000
Q ss_pred c---cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 E---LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~---~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
. ...+.+|+|+-. ++. ...++.+.++|+|||++++..
T Consensus 245 ~~~~~~~gg~Dvvid~-----~G~---~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 245 GPVGLVPGGVDVVIEC-----AGV---AETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp STTSSSTTCEEEEEEC-----SCC---HHHHHHHHHHEEEEEEEEECS
T ss_pred hhhhccCCCCCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEEe
Confidence 0 123579999976 432 456788899999999976643
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00044 Score=65.89 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=71.4
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~ 253 (381)
++...+++|++||-+|+|. |.++..+++..|+ +|+++|.+++.++.+++. |.. .+ . |+.+... +.+.
T Consensus 159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~v--i-~~~~~~~~~~v~ 228 (352)
T 3fpc_A 159 AELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT---DI--I-NYKNGDIVEQIL 228 (352)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC---EE--E-CGGGSCHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---eE--E-cCCCcCHHHHHH
Confidence 4777889999999999986 8899999988888 899999999988887764 432 11 2 3322110 0000
Q ss_pred cc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 EL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.. ....+|+|+.. ++. ...++.+.++|+|+|+++..
T Consensus 229 ~~t~g~g~D~v~d~-----~g~---~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 229 KATDGKGVDKVVIA-----GGD---VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp HHTTTCCEEEEEEC-----SSC---TTHHHHHHHHEEEEEEEEEC
T ss_pred HHcCCCCCCEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEe
Confidence 01 22469999975 432 34677788999999997654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0034 Score=59.82 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=72.3
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc--cccCcCCc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV--NCLKPTNM 252 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~--~~l~~~~l 252 (381)
++...+++|++||-+|+|. |.++..+++..|++ |+++|.+++.++.+++. .. .-+.+... +. .++. +.+
T Consensus 172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~-~~~~~~~~-~~v 244 (363)
T 3m6i_A 172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVE-RLSAEESA-KKI 244 (363)
T ss_dssp HHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECC-SCCHHHHH-HHH
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hccccccc-ccchHHHH-HHH
Confidence 4677889999999999986 89999999988887 99999999999988875 21 11222211 10 0110 000
Q ss_pred cc-cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TE-LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~-~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.. .....+|+|+-. ++. ...++.+.++|++||++++.
T Consensus 245 ~~~t~g~g~Dvvid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 245 VESFGGIEPAVALEC-----TGV---ESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp HHHTSSCCCSEEEEC-----SCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred HHHhCCCCCCEEEEC-----CCC---hHHHHHHHHHhcCCCEEEEE
Confidence 00 123579999986 432 45677888999999997654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0048 Score=59.09 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=71.0
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc--C-cC
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL--K-PT 250 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l--~-~~ 250 (381)
+.+...+++|++||-+|+|. |.++..+|+..|+ +|++++.+++.++.+++. |.. . .. |+.+. . .+
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~--vi-~~~~~~~~~~~ 252 (373)
T 1p0f_A 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT---E--CL-NPKDYDKPIYE 252 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS---E--EE-CGGGCSSCHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---E--EE-ecccccchHHH
Confidence 44567788999999999985 8888999988888 899999999988877643 432 1 12 33321 0 00
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i~ 297 (381)
.+.....+.+|+|+-. ++. ...++.+.++|+|+ |+++..
T Consensus 253 ~i~~~t~gg~Dvvid~-----~g~---~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 253 VICEKTNGGVDYAVEC-----AGR---IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HHHHHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHhCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCCEEEEE
Confidence 0001122479999976 432 45677889999999 996654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0011 Score=63.60 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=68.4
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+..+.+++|++||-+|+|. |.++..+++..|++|++++.+++.++.+++. |.. .+. |+.+.. .....
T Consensus 187 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l----Ga~---~vi---~~~~~~--~~~~~ 254 (369)
T 1uuf_A 187 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD---EVV---NSRNAD--EMAAH 254 (369)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEE---ETTCHH--HHHTT
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEe---ccccHH--HHHHh
Confidence 4456788999999999985 8888999988899999999999988888753 432 111 222110 00001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. +.+|+|+.. ++. ...++.+.++|+|+|+++..
T Consensus 255 ~-~g~Dvvid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 255 L-KSFDFILNT-----VAA---PHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp T-TCEEEEEEC-----CSS---CCCHHHHHTTEEEEEEEEEC
T ss_pred h-cCCCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEe
Confidence 1 579999876 332 22356678999999996653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00069 Score=64.14 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=71.0
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCcc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~ 253 (381)
.++...+++|++||-+|+|. |.++..+++..|++|+++|.+++.++.+++. |.. .+. |+.+... +.+.
T Consensus 158 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~i---~~~~~~~~~~~~ 227 (340)
T 3s2e_A 158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL----GAE---VAV---NARDTDPAAWLQ 227 (340)
T ss_dssp HHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---EEE---ETTTSCHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc----CCC---EEE---eCCCcCHHHHHH
Confidence 34566788999999999986 9999999998899999999999988877653 432 111 2222110 0000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. ..+.+|.|+.. .+. ...++.+.++|+|+|++++.
T Consensus 228 ~-~~g~~d~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 228 K-EIGGAHGVLVT-----AVS---PKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp H-HHSSEEEEEES-----SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred H-hCCCCCEEEEe-----CCC---HHHHHHHHHHhccCCEEEEe
Confidence 0 11468988875 221 45678889999999997654
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0052 Score=58.86 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=70.8
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC---cC
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK---PT 250 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~---~~ 250 (381)
+.+...+++|++||-+|+|. |.++..+++..|+ +|+++|.+++.++.+++. |.. . .. |+.+.. .+
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~--vi-~~~~~~~~~~~ 256 (376)
T 1e3i_A 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT---D--CL-NPRELDKPVQD 256 (376)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---E--EE-CGGGCSSCHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc---E--EE-ccccccchHHH
Confidence 44567788999999999985 8888999988888 899999999988877643 432 1 12 333210 00
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i~ 297 (381)
.+.....+.+|+|+-. ++. ...++.+.++|+++ |++++.
T Consensus 257 ~v~~~~~~g~Dvvid~-----~G~---~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 257 VITELTAGGVDYSLDC-----AGT---AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHHHHHTSCBSEEEES-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHhCCCccEEEEC-----CCC---HHHHHHHHHHhhcCCCEEEEE
Confidence 0001112479999876 432 45678889999999 996654
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0073 Score=57.75 Aligned_cols=104 Identities=17% Similarity=0.283 Sum_probs=71.1
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc--C-cC
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL--K-PT 250 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l--~-~~ 250 (381)
+.+...+++|++||-+|+|. |.++..+++..|+ +|++++.+++.++.+++. |.. .+ . |+.+. . .+
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~v--i-~~~~~~~~~~~ 251 (373)
T 2fzw_A 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---EC--I-NPQDFSKPIQE 251 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EE--E-CGGGCSSCHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eE--e-ccccccccHHH
Confidence 34566788999999999985 8888899988888 899999999988887653 432 11 2 33221 0 00
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i~ 297 (381)
.+.....+.+|+|+.. ++. ...++.+.++|+|+ |++++.
T Consensus 252 ~v~~~~~~g~D~vid~-----~g~---~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 252 VLIEMTDGGVDYSFEC-----IGN---VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp HHHHHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHhCCCCCEEEEC-----CCc---HHHHHHHHHhhccCCcEEEEE
Confidence 0001122479999876 432 45678889999999 997654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0058 Score=57.99 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=69.9
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cC-cCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LK-PTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~-~~~l~ 253 (381)
++...+++|++||-+|+|. |.++..+++..|++|++++.+++.++.+++. |.. .+. |+.+ .. .+.+.
T Consensus 161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~~---~~~~~~~~~~~i~ 230 (352)
T 1e3j_A 161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GAD---VTL---VVDPAKEEESSII 230 (352)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---EEE---ECCTTTSCHHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CCC---EEE---cCcccccHHHHHH
Confidence 3667788999999999985 8888899888899999999999988877643 432 122 2221 00 00000
Q ss_pred cc-C---CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 EL-F---LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~-~---~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.. . .+.+|+|+.. ++. ...++.+.++|+|+|+++..
T Consensus 231 ~~~~~~~g~g~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 231 ERIRSAIGDLPNVTIDC-----SGN---EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHHHHSSSCCSEEEEC-----SCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred HHhccccCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 00 1 2469999976 332 34577788999999997654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0044 Score=59.51 Aligned_cols=104 Identities=20% Similarity=0.311 Sum_probs=71.8
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc--C-cC
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL--K-PT 250 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l--~-~~ 250 (381)
+.+...+++|++||-+|+|. |.++..+++..|+ +|+++|.+++.++.+++. |.. . .. |+.+. . .+
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~--vi-~~~~~~~~~~~ 254 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----GVN---E--FV-NPKDHDKPIQE 254 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----TCC---E--EE-CGGGCSSCHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---E--EE-ccccCchhHHH
Confidence 44667888999999999985 8899999988888 899999999988877643 432 1 12 33210 0 00
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i~ 297 (381)
.+.....+.+|+|+-. ++. ...++.+.++|+|| |++++.
T Consensus 255 ~i~~~~~gg~D~vid~-----~g~---~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 255 VIVDLTDGGVDYSFEC-----IGN---VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHHHHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHhcCCCCCEEEEC-----CCC---HHHHHHHHHHhhccCCEEEEE
Confidence 0011123479999976 432 45678889999997 996654
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0061 Score=58.34 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=70.8
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc--C-cC
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL--K-PT 250 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l--~-~~ 250 (381)
+.+...+++|++||-+|+|. |.++..+++..|+ +|++++.+++.++.+++. |.. . .. |+.+. . .+
T Consensus 184 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~--vi-~~~~~~~~~~~ 253 (374)
T 1cdo_A 184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GAT---D--FV-NPNDHSEPISQ 253 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCC---E--EE-CGGGCSSCHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---e--EE-eccccchhHHH
Confidence 34566788999999999975 8888999988888 899999999988877643 432 1 12 33321 0 00
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i~ 297 (381)
.+.....+.+|+|+.. ++. ...++.+.++|+|+ |++++.
T Consensus 254 ~~~~~~~~g~D~vid~-----~g~---~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 254 VLSKMTNGGVDFSLEC-----VGN---VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHHHHTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHhCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCcEEEEE
Confidence 0001112479999976 432 45678889999999 997654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0053 Score=57.30 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=65.6
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
+...+++|++||-+|+|. |.++..+++..|++|++++ +++.++.+++. |. +.... |...+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----Ga----~~v~~-d~~~v--------- 196 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----GV----RHLYR-EPSQV--------- 196 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----TE----EEEES-SGGGC---------
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----CC----CEEEc-CHHHh---------
Confidence 777889999999999974 8999999988899999999 98888887663 32 22223 42222
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.+|+|+-. ++. . .+..+.++|+|+|+++..
T Consensus 197 ~~g~Dvv~d~-----~g~---~-~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 197 TQKYFAIFDA-----VNS---Q-NAAALVPSLKANGHIICI 228 (315)
T ss_dssp CSCEEEEECC----------------TTGGGEEEEEEEEEE
T ss_pred CCCccEEEEC-----CCc---h-hHHHHHHHhcCCCEEEEE
Confidence 3689999875 332 1 225578999999996654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.023 Score=53.13 Aligned_cols=126 Identities=11% Similarity=0.084 Sum_probs=87.1
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEecCccccCc
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL--QDTSDYIFVITVNCLKP 249 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl--~~~i~~~~~~d~~~l~~ 249 (381)
.++..++..--.....||++|||-=..+..+....+++++-+| .|..++..++.+...+. .++..++.+ |+++ .-
T Consensus 90 ~~d~~v~~~~~~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~-Dl~d-~~ 166 (310)
T 2uyo_A 90 FFDTYFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPI-DLRQ-DW 166 (310)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEEC-CTTS-CH
T ss_pred HHHHHHHHHHHhCCCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEec-chHh-hH
Confidence 4444444431112246999999986666555421257999999 59999998888875442 356788888 8876 20
Q ss_pred -CCc--cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 250 -TNM--TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 250 -~~l--~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+.+ ..+..+.--++++-+++.+++++....+++.+...+.||+.+++....
T Consensus 167 ~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 167 PPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp HHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred HHHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 000 012224456788888999999888999999999999999998887644
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0078 Score=57.45 Aligned_cols=104 Identities=18% Similarity=0.272 Sum_probs=70.5
Q ss_pred HHHHcCCC-----CCCEEEEec-CCc-hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 176 LIEKVKLV-----KGQEVLEIG-CGW-GTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 176 l~~~l~~~-----~~~~VLDiG-cG~-G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
+.+...++ +|++||-+| +|. |.++..+++. .+++|++++.+++.++.+++. |.. .+ . |+.+.
T Consensus 158 l~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----Gad---~v--i-~~~~~ 227 (363)
T 4dvj_A 158 FFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----GAH---HV--I-DHSKP 227 (363)
T ss_dssp HHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----TCS---EE--E-CTTSC
T ss_pred HHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----CCC---EE--E-eCCCC
Confidence 34556666 889999998 664 9999999987 589999999999988887652 432 11 2 33221
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+.+.....+.+|+|+.. ++ -...++.+.++|+|+|++++.
T Consensus 228 ~~~~v~~~~~~g~Dvvid~-----~g---~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 228 LAAEVAALGLGAPAFVFST-----TH---TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp HHHHHHTTCSCCEEEEEEC-----SC---HHHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHhcCCCceEEEEC-----CC---chhhHHHHHHHhcCCCEEEEE
Confidence 0011111233579999876 33 245678889999999997654
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0081 Score=57.47 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=70.6
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc--C-cC
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL--K-PT 250 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l--~-~~ 250 (381)
+.+...+++|++||-+|+|. |.++..+++..|+ +|++++.+++.++.+++. |.. . .. |+.+. . .+
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~--vi-~~~~~~~~~~~ 252 (374)
T 2jhf_A 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT---E--CV-NPQDYKKPIQE 252 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---E--EE-CGGGCSSCHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc---e--Ee-cccccchhHHH
Confidence 34566788999999999986 8888899988888 899999999988877643 432 1 12 33321 0 00
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i~ 297 (381)
.+.....+.+|+|+.. ++. ...++.+.++|+++ |++++.
T Consensus 253 ~~~~~~~~g~D~vid~-----~g~---~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 253 VLTEMSNGGVDFSFEV-----IGR---LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HHHHHTTSCBSEEEEC-----SCC---HHHHHHHHHHBCTTTCEEEEC
T ss_pred HHHHHhCCCCcEEEEC-----CCC---HHHHHHHHHHhhcCCcEEEEe
Confidence 0001122479999876 432 45677888999999 997654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0087 Score=56.64 Aligned_cols=105 Identities=14% Similarity=0.208 Sum_probs=70.8
Q ss_pred HHHHHcCCC------CCCEEEEe-cCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 175 VLIEKVKLV------KGQEVLEI-GCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 175 ~l~~~l~~~------~~~~VLDi-GcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
.+.+...++ +|++||-+ |+| .|..+..+++..|++|++++.+++.++.+++. |.. .+ . |+.+
T Consensus 135 ~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v--i-~~~~ 204 (346)
T 3fbg_A 135 TLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----GAD---IV--L-NHKE 204 (346)
T ss_dssp HHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----TCS---EE--E-CTTS
T ss_pred HHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc---EE--E-ECCc
Confidence 344566777 89999999 566 48889999988899999999999988888763 321 11 1 2221
Q ss_pred cCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 247 LKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 247 l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
-..+.+.....+.+|+|+.. ++ -...++.+.++|+|+|+++..
T Consensus 205 ~~~~~~~~~~~~g~Dvv~d~-----~g---~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 205 SLLNQFKTQGIELVDYVFCT-----FN---TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp CHHHHHHHHTCCCEEEEEES-----SC---HHHHHHHHHHHEEEEEEEEES
T ss_pred cHHHHHHHhCCCCccEEEEC-----CC---chHHHHHHHHHhccCCEEEEE
Confidence 10001111223579999986 33 255678888999999997643
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0025 Score=61.60 Aligned_cols=108 Identities=14% Similarity=0.052 Sum_probs=71.7
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC--cCCc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK--PTNM 252 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~--~~~l 252 (381)
+....+++|++||-+|||. |.++..+|+..|+ +|+++|.+++.++.+++. |. +.+ |+.+.. .+.+
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----Ga----~~i---~~~~~~~~~~~v 246 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF----EIA---DLSLDTPLHEQI 246 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC----EEE---ETTSSSCHHHHH
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----CC----cEE---ccCCcchHHHHH
Confidence 3467788999999999986 8999999998888 799999999988887653 43 222 222111 0000
Q ss_pred ccc-CCCcccEEEEchhhH---------hhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TEL-FLGNFSTVFICGMIE---------AVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~-~~~~fD~Ivs~~~l~---------~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
... ....+|+|+-.-.-. |. .+....++.+.++|++||++++.
T Consensus 247 ~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 247 AALLGEPEVDCAVDAVGFEARGHGHEGAKH--EAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp HHHHSSSCEEEEEECCCTTCBCSSTTGGGS--BCTTHHHHHHHHHEEEEEEEEEC
T ss_pred HHHhCCCCCCEEEECCCCcccccccccccc--cchHHHHHHHHHHHhcCCEEEEe
Confidence 001 124699999753211 11 12345788899999999997654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00047 Score=81.23 Aligned_cols=103 Identities=16% Similarity=0.048 Sum_probs=53.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcC------CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTG------CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~------~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
.|..+|||||.|+|..+..+.+..+ .+++.+|+|+...+.++++++.. +++.... |..+.. .+.
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~-d~~~~~-----~~~ 1308 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQW-DPANPA-----PGS 1308 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECC-CSSCCC-----C--
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccc-cccccc-----cCC
Confidence 3567999999999987666554422 37899999998888888776542 2333222 322210 023
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.++||+|++..+++.. .+....+++++++|||||.+++.
T Consensus 1309 ~~~ydlvia~~vl~~t--~~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A 1309 LGKADLLVCNCALATL--GDPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp ---CCEEEEECC----------------------CCEEEEE
T ss_pred CCceeEEEEccccccc--ccHHHHHHHHHHhcCCCcEEEEE
Confidence 4679999999999766 45788999999999999997664
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0033 Score=60.99 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=64.9
Q ss_pred CCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCcccc-C
Q 047022 181 KLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTEL-F 256 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~~-~ 256 (381)
.+++|++||-+|+|. |.++..+++..|+ +|+++|.+++.++.+++. |.. .+ - |+.+.. .+.+... .
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~v--i-~~~~~~~~~~i~~~t~ 279 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HV--I-DPTKENFVEAVLDYTN 279 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EE--E-CTTTSCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EE--E-cCCCCCHHHHHHHHhC
Confidence 678999999999985 8888999988888 999999999988888764 422 11 1 222111 0000001 2
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHH----hccccCceEEEEc
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCE----SLLAENGLSCSTV 298 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~----~~LkpgG~~~i~~ 298 (381)
...+|+|+-. ++.. ...+..+. +.++++|++++..
T Consensus 280 g~g~D~vid~-----~g~~--~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 280 GLGAKLFLEA-----TGVP--QLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp TCCCSEEEEC-----SSCH--HHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCCCCEEEEC-----CCCc--HHHHHHHHHHHHhccCCCcEEEEeC
Confidence 2479999976 4321 22334444 4449999976643
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0011 Score=62.84 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=68.2
Q ss_pred HHHHHcCCCCCCEEEEecCC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CC
Q 047022 175 VLIEKVKLVKGQEVLEIGCG--WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TN 251 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG--~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~ 251 (381)
.+.+...+++|++||-+||| .|..+..+++..|++|++++.+++.++.+++. |.. .+. |+.+... +.
T Consensus 135 ~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga~---~~~---~~~~~~~~~~ 204 (340)
T 3gms_A 135 TCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GAA---YVI---DTSTAPLYET 204 (340)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEE---ETTTSCHHHH
T ss_pred HHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CCc---EEE---eCCcccHHHH
Confidence 44567788999999999987 58888888888899999999999888887763 322 111 2221110 00
Q ss_pred ccc-cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTE-LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~-~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.. .....+|+|+.. .+. ... ....++|+|+|+++..
T Consensus 205 ~~~~~~~~g~Dvvid~-----~g~---~~~-~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 205 VMELTNGIGADAAIDS-----IGG---PDG-NELAFSLRPNGHFLTI 242 (340)
T ss_dssp HHHHTTTSCEEEEEES-----SCH---HHH-HHHHHTEEEEEEEEEC
T ss_pred HHHHhCCCCCcEEEEC-----CCC---hhH-HHHHHHhcCCCEEEEE
Confidence 000 122479999986 332 122 2344899999997654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=63.02 Aligned_cols=103 Identities=18% Similarity=0.094 Sum_probs=69.4
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL- 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~- 255 (381)
+...+++|++||-+|+|. |..+..+++..|++|++++.+++.++.+++. |.. .+... +..++. +.+...
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~-~~~~~~-~~v~~~~ 253 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GAD---HGINR-LEEDWV-ERVYALT 253 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEEET-TTSCHH-HHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CCC---EEEcC-CcccHH-HHHHHHh
Confidence 567788999999999986 8888999988899999999999988887654 432 11112 211110 000001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
....+|+|+.. ++. ..++.+.++|+|+|++++..
T Consensus 254 ~g~g~D~vid~-----~g~----~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 254 GDRGADHILEI-----AGG----AGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp TTCCEEEEEEE-----TTS----SCHHHHHHHEEEEEEEEEEC
T ss_pred CCCCceEEEEC-----CCh----HHHHHHHHHhhcCCEEEEEe
Confidence 22479999976 331 24566788999999976543
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0098 Score=55.31 Aligned_cols=180 Identities=13% Similarity=0.088 Sum_probs=93.7
Q ss_pred hhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHH--HHHHcCCCCCCEEEEecCCchHHHHHHHH---
Q 047022 130 HVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSV--LIEKVKLVKGQEVLEIGCGWGTLAIEIVR--- 204 (381)
Q Consensus 130 ~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~--l~~~l~~~~~~~VLDiGcG~G~~~~~la~--- 204 (381)
.|..-=|-+..+ |..-+++ .|++.....+.+++...+.. +.+...-++.-+|||+|-|+|...+...+
T Consensus 47 eIi~T~DGS~Tl-~s~~f~e------~YhS~~~GAl~Es~hVFi~~~~L~~r~~~~~~~~IlE~GFGTGLNfl~t~~~~~ 119 (308)
T 3vyw_A 47 EIADTADGSKTL-IHKTYGE------PYHSQTAGAIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLW 119 (308)
T ss_dssp EEEECTTSCEEE-EETTTTE------ESSCTTTCHHHHHHHHTHHHHTHHHHHHHCSEEEEEEECCTTSHHHHHHHHHHH
T ss_pred eeEECCCCCcCc-ccCccCC------ccCCCCCcHHHHHHHHHhccCCchHHhcCCCCcEEEEeCCCccHHHHHHHHHHH
Confidence 344444444455 5444443 23332233477776655432 22333223446899999999986644332
Q ss_pred h--cCCE--EEEEcCCH--------H-HHHHHHHHHHHcC--CCCC--eEEEEecCccccCcCCccccCCCcccEEEEch
Q 047022 205 Q--TGCK--YTGITLSE--------L-QLKYAEIKVKEAG--LQDT--SDYIFVITVNCLKPTNMTELFLGNFSTVFICG 267 (381)
Q Consensus 205 ~--~~~~--v~gvDis~--------~-~~~~a~~~~~~~g--l~~~--i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~ 267 (381)
+ +..+ ++.++..+ + ..+..+....... -..+ +++..+ |+.+.-+ .+...+||+|+--+
T Consensus 120 ~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G-Da~~~l~----~l~~~~~Da~flDg 194 (308)
T 3vyw_A 120 EVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG-DARKRIK----EVENFKADAVFHDA 194 (308)
T ss_dssp HHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES-CHHHHGG----GCCSCCEEEEEECC
T ss_pred HhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec-hHHHHHh----hhcccceeEEEeCC
Confidence 1 3444 45665311 1 1122222222110 0123 456778 8766431 23345799999864
Q ss_pred hhHhhChh-cHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 047022 268 MIEAVGHD-YMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLEN 346 (381)
Q Consensus 268 ~l~~~~~~-~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~ 346 (381)
--....++ --..+|+.+.++++|||+++ |.. +...+.+.|. ++||+|..+..
T Consensus 195 FsP~kNPeLWs~e~f~~l~~~~~pgg~la-TYt-------------------------aag~VRR~L~-~aGF~V~k~~G 247 (308)
T 3vyw_A 195 FSPYKNPELWTLDFLSLIKERIDEKGYWV-SYS-------------------------SSLSVRKSLL-TLGFKVGSSRE 247 (308)
T ss_dssp SCTTTSGGGGSHHHHHHHHTTEEEEEEEE-ESC-------------------------CCHHHHHHHH-HTTCEEEEEEC
T ss_pred CCcccCcccCCHHHHHHHHHHhCCCcEEE-EEe-------------------------CcHHHHHHHH-HCCCEEEecCC
Confidence 22111111 12689999999999999865 211 1123344555 48999988776
Q ss_pred cc
Q 047022 347 IE 348 (381)
Q Consensus 347 ~~ 348 (381)
++
T Consensus 248 ~g 249 (308)
T 3vyw_A 248 IG 249 (308)
T ss_dssp C-
T ss_pred CC
Confidence 54
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0078 Score=56.88 Aligned_cols=96 Identities=22% Similarity=0.146 Sum_probs=66.8
Q ss_pred CCCCCCEEEEecCCc-hHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCcccc-
Q 047022 181 KLVKGQEVLEIGCGW-GTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTEL- 255 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~-G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~- 255 (381)
.+ +|++||-+|+|. |.++..+++.. |++|++++.|++.++.+++. |.. .+ . |+.+ ... ....
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v--i-~~~~~~~~--~~~~~ 234 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GAD---YV--S-EMKDAESL--INKLT 234 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TCS---EE--E-CHHHHHHH--HHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CCC---EE--e-ccccchHH--HHHhh
Confidence 67 999999999975 88888999887 99999999999988887653 422 11 1 3221 000 0001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+.. ++. ...++.+.++|+|+|+++..
T Consensus 235 ~g~g~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 235 DGLGASIAIDL-----VGT---EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp TTCCEEEEEES-----SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred cCCCccEEEEC-----CCC---hHHHHHHHHHhhcCCEEEEe
Confidence 12379999986 432 44677888999999996654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0095 Score=57.20 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=68.7
Q ss_pred HHHcC-CCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecC---ccccCcC
Q 047022 177 IEKVK-LVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT---VNCLKPT 250 (381)
Q Consensus 177 ~~~l~-~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d---~~~l~~~ 250 (381)
++.+. +++|++||-+|+|. |.++..+++..| .+|++++.+++.++.+++. |.. .+... + -.+.. +
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~-~~~~~~~~~-~ 257 (380)
T 1vj0_A 187 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTLNR-RETSVEERR-K 257 (380)
T ss_dssp HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEEET-TTSCHHHHH-H
T ss_pred HHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----CCc---EEEec-cccCcchHH-H
Confidence 35667 88999999999875 888899998888 5999999999988877642 432 12221 1 00100 0
Q ss_pred Ccccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 251 NMTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 251 ~l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+... ....+|+|+.. ++. ...++.+.++|+|+|+++..
T Consensus 258 ~v~~~~~g~g~Dvvid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 258 AIMDITHGRGADFILEA-----TGD---SRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHHHHTTTSCEEEEEEC-----SSC---TTHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHhCCCCCcEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 00001 12369999976 332 24567788999999996654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.018 Score=54.25 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=69.2
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~ 254 (381)
+....++++++||-+|+|. |..+..+++..|++|++++.+++.++.+++ .|.. ... |+.+... +.+..
T Consensus 157 l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~-----~~~-d~~~~~~~~~~~~ 226 (339)
T 1rjw_A 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD-----LVV-NPLKEDAAKFMKE 226 (339)
T ss_dssp HHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS-----EEE-CTTTSCHHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC-----EEe-cCCCccHHHHHHH
Confidence 3445788999999999974 888888888889999999999998887754 2432 123 4432110 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.. +.+|+|+.. .+. ...++.+.++|+++|+++..
T Consensus 227 ~~-~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 227 KV-GGVHAAVVT-----AVS---KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp HH-SSEEEEEES-----SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred Hh-CCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEe
Confidence 11 469999876 332 35677888999999996654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.011 Score=51.07 Aligned_cols=101 Identities=18% Similarity=0.122 Sum_probs=65.1
Q ss_pred HHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccc
Q 047022 178 EKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~ 254 (381)
+...++++++||.+|+ |.|..+..+++..|++|++++.+++..+.+++ .|.. . .. |+.+... +.+..
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~--~---~~-d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE--Y---VG-DSRSVDFADEILE 101 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS--E---EE-ETTCSTHHHHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC--E---Ee-eCCcHHHHHHHHH
Confidence 4467889999999994 45777777777678999999999887766543 2321 1 12 3322110 00000
Q ss_pred -cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 -LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 -~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+.+|+|+.+. + ...++.+.++|+|+|+++..
T Consensus 102 ~~~~~~~D~vi~~~-----g----~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 102 LTDGYGVDVVLNSL-----A----GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp HTTTCCEEEEEECC-----C----THHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCCeEEEECC-----c----hHHHHHHHHHhccCCEEEEE
Confidence 1124699999762 2 23577888999999997654
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0029 Score=59.41 Aligned_cols=103 Identities=21% Similarity=0.200 Sum_probs=68.5
Q ss_pred HHHHcCCCCCCEEEEec-CC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCc
Q 047022 176 LIEKVKLVKGQEVLEIG-CG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNM 252 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiG-cG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l 252 (381)
+.+...+++|++||-+| +| .|..+..+++..|++|++++.+++.++.+++. |.. .+. |+.+... +.+
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~---~~~---~~~~~~~~~~~ 201 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----GAW---ETI---DYSHEDVAKRV 201 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEE---ETTTSCHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEE---eCCCccHHHHH
Confidence 34456788999999999 44 58888888888899999999999988887753 321 111 2221110 000
Q ss_pred cc-cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TE-LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~-~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.. .....+|+|+.. ++. ..+..+.++|+|+|+++..
T Consensus 202 ~~~~~~~g~Dvvid~-----~g~----~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 202 LELTDGKKCPVVYDG-----VGQ----DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp HHHTTTCCEEEEEES-----SCG----GGHHHHHTTEEEEEEEEEC
T ss_pred HHHhCCCCceEEEEC-----CCh----HHHHHHHHHhcCCCEEEEE
Confidence 00 122479999986 332 3466778999999996654
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.012 Score=55.52 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=68.5
Q ss_pred CCCCCCEEEEecCCc-hHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-CC
Q 047022 181 KLVKGQEVLEIGCGW-GTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL-FL 257 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~-G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~-~~ 257 (381)
.++++++||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++. |.. .+... +- +.. +.+... ..
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----Ga~---~~i~~-~~-~~~-~~v~~~t~g 237 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----GAD---AAVKS-GA-GAA-DAIRELTGG 237 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----TCS---EEEEC-ST-THH-HHHHHHHGG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC---EEEcC-CC-cHH-HHHHHHhCC
Confidence 578999999999986 88899999875 78999999999988887653 432 12211 11 110 000001 12
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..+|+|+-. ++. ...++.+.++|+|+|++++..
T Consensus 238 ~g~d~v~d~-----~G~---~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 238 QGATAVFDF-----VGA---QSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp GCEEEEEES-----SCC---HHHHHHHHHHEEEEEEEEECS
T ss_pred CCCeEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEEC
Confidence 379999986 443 457788899999999976643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0038 Score=59.01 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=65.8
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.++...+++|++||=+|+|. |.++..+++. .+++|+++|.+++.++.+++. |...-+..... |..+. +.
T Consensus 155 ~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~~~i~~~~~-~~~~~----v~ 225 (348)
T 4eez_A 155 AIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GADVTINSGDV-NPVDE----IK 225 (348)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCSEEEEC-CC-CHHHH----HH
T ss_pred eecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCeEEEeCCCC-CHHHH----hh
Confidence 35666788999999999986 5666666665 578999999999877766654 33211111111 21110 00
Q ss_pred cc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 EL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.. ....+|.++.. .+ -...+....+.|+++|++++..
T Consensus 226 ~~t~g~g~d~~~~~-----~~---~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 226 KITGGLGVQSAIVC-----AV---ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp HHTTSSCEEEEEEC-----CS---CHHHHHHHHHTEEEEEEEEECC
T ss_pred hhcCCCCceEEEEe-----cc---CcchhheeheeecCCceEEEEe
Confidence 01 22356666654 22 1556778889999999966543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0026 Score=60.35 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=68.3
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~ 253 (381)
++...+ +|++||-+|+|. |..+..+++..|+ +|++++.+++.++.+++. |.. .+ . |+.+... +.+.
T Consensus 161 l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~---~~--~-~~~~~~~~~~v~ 229 (348)
T 2d8a_A 161 VLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD---YV--I-NPFEEDVVKEVM 229 (348)
T ss_dssp HTTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS---EE--E-CTTTSCHHHHHH
T ss_pred HHhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EE--E-CCCCcCHHHHHH
Confidence 356677 999999999975 8888888888888 899999999888877643 321 11 2 3322110 0000
Q ss_pred cc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 EL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.. ....+|+|+.. ++. ...++.+.++|+++|+++..
T Consensus 230 ~~~~g~g~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 230 DITDGNGVDVFLEF-----SGA---PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp HHTTTSCEEEEEEC-----SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred HHcCCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 01 12469999986 332 45677888999999996654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0088 Score=56.27 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=70.3
Q ss_pred HHHHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-C
Q 047022 174 SVLIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-T 250 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~ 250 (381)
..+.+...+++|++||-+|| |.|..+..+++..|++|++++.+++.++.+.+. .|.. .. . |+.+... +
T Consensus 139 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~---~~--~-~~~~~~~~~ 209 (336)
T 4b7c_A 139 FALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGFD---GA--I-DYKNEDLAA 209 (336)
T ss_dssp HHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCCS---EE--E-ETTTSCHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCC---EE--E-ECCCHHHHH
Confidence 34446778899999999998 458888888888899999999999877776332 2321 11 1 2222110 0
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.....+.+|+|+.+ .+. ..++.+.+.|+++|++++.
T Consensus 210 ~~~~~~~~~~d~vi~~-----~g~----~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 210 GLKRECPKGIDVFFDN-----VGG----EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHHHHCTTCEEEEEES-----SCH----HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHhcCCCceEEEEC-----CCc----chHHHHHHHHhhCCEEEEE
Confidence 0001113579999886 331 3677888999999997653
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.017 Score=54.01 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHcCCCCCC-EEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 178 EKVKLVKGQ-EVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~-~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
..+.+++++ +||-+|+ | .|.++..+++..|++|++++.+++.++.+++. |.. .+. |+.+... ...
T Consensus 139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi---~~~~~~~--~~~ 206 (324)
T 3nx4_A 139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----GAN---RIL---SRDEFAE--SRP 206 (324)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TCS---EEE---EGGGSSC--CCS
T ss_pred hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEE---ecCCHHH--HHh
Confidence 455566632 4999997 4 59999999998899999999999988888763 432 111 2222210 112
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+.+|+|+-. ++. ..++.+.++|+|+|+++..
T Consensus 207 ~~~~~~d~v~d~-----~g~----~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 207 LEKQLWAGAIDT-----VGD----KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp SCCCCEEEEEES-----SCH----HHHHHHHHTEEEEEEEEEC
T ss_pred hcCCCccEEEEC-----CCc----HHHHHHHHHHhcCCEEEEE
Confidence 234679998875 442 2778889999999997654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0092 Score=55.81 Aligned_cols=97 Identities=21% Similarity=0.218 Sum_probs=65.0
Q ss_pred HHHcCCCCCCEEEEec-CC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCcc
Q 047022 177 IEKVKLVKGQEVLEIG-CG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiG-cG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~ 253 (381)
++...+++|++||-+| +| .|.++..+++..|++|++++ +++..+.+++ .|.. .+. |+.+.. ..
T Consensus 145 l~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~---~~i---~~~~~~~~~--- 210 (321)
T 3tqh_A 145 LNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAE---QCI---NYHEEDFLL--- 210 (321)
T ss_dssp HHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCS---EEE---ETTTSCHHH---
T ss_pred HHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCC---EEE---eCCCcchhh---
Confidence 3778889999999997 66 49999999998899999887 5554665554 3432 122 222211 00
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+-. ++. .. +..+.++|+|+|+++..
T Consensus 211 -~~~~g~D~v~d~-----~g~---~~-~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 211 -AISTPVDAVIDL-----VGG---DV-GIQSIDCLKETGCIVSV 244 (321)
T ss_dssp -HCCSCEEEEEES-----SCH---HH-HHHHGGGEEEEEEEEEC
T ss_pred -hhccCCCEEEEC-----CCc---HH-HHHHHHhccCCCEEEEe
Confidence 012579999876 432 22 37788999999997654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.014 Score=55.15 Aligned_cols=103 Identities=20% Similarity=0.325 Sum_probs=68.5
Q ss_pred HHHcCCCCCCEEEEecCC--chHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCc
Q 047022 177 IEKVKLVKGQEVLEIGCG--WGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNM 252 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG--~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l 252 (381)
+....++++++||-+|+| .|..+..+++.. |++|++++.+++.++.+++. |.. .+ . |+.+... +.+
T Consensus 163 l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~--~-~~~~~~~~~~~ 232 (347)
T 1jvb_A 163 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YV--I-NASMQDPLAEI 232 (347)
T ss_dssp HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EE--E-ETTTSCHHHHH
T ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC---EE--e-cCCCccHHHHH
Confidence 345778899999999998 577788888877 99999999999888877543 321 11 1 2222110 000
Q ss_pred cccCC-CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFL-GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~-~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..... +.+|+|+.. .+. ...++.+.++|+|+|+++..
T Consensus 233 ~~~~~~~~~d~vi~~-----~g~---~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 233 RRITESKGVDAVIDL-----NNS---EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp HHHTTTSCEEEEEES-----CCC---HHHHTTGGGGEEEEEEEEEC
T ss_pred HHHhcCCCceEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 01112 479999986 332 34677788999999996653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0047 Score=58.14 Aligned_cols=101 Identities=20% Similarity=0.242 Sum_probs=66.5
Q ss_pred HHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccc
Q 047022 178 EKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~ 254 (381)
+...+++|++||-+|+ |.|..+..+++..|++|++++.+++.++.+++. |.. .+. |+.+... +.+..
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~---~~~---~~~~~~~~~~~~~ 211 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----GAE---YLI---NASKEDILRQVLK 211 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEE---ETTTSCHHHHHHH
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEE---eCCCchHHHHHHH
Confidence 3457889999999994 458888888888899999999999888877653 321 111 2221110 00000
Q ss_pred -cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 -LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 -~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+.. .+. ..++.+.++|+|+|+++..
T Consensus 212 ~~~~~g~D~vid~-----~g~----~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 212 FTNGKGVDASFDS-----VGK----DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp HTTTSCEEEEEEC-----CGG----GGHHHHHHHEEEEEEEEEC
T ss_pred HhCCCCceEEEEC-----CCh----HHHHHHHHHhccCCEEEEE
Confidence 123579999986 321 3466778899999996654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.019 Score=53.78 Aligned_cols=104 Identities=19% Similarity=0.259 Sum_probs=68.0
Q ss_pred HHHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCc-C
Q 047022 175 VLIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKP-T 250 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~-~ 250 (381)
.+.+...++++++||-.|| |.|..+..+++..|++|++++.+++.++.+++. |.. ... |+.+ ... +
T Consensus 136 al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~~-----~~~-d~~~~~~~~~ 205 (333)
T 1v3u_A 136 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD-----AAF-NYKTVNSLEE 205 (333)
T ss_dssp HHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS-----EEE-ETTSCSCHHH
T ss_pred HHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCc-----EEE-ecCCHHHHHH
Confidence 3345667889999999998 468888888877899999999999887776332 321 122 3322 100 0
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.....+.+|+|+.+ .+. ..++.+.++|+|||++++.
T Consensus 206 ~~~~~~~~~~d~vi~~-----~g~----~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 206 ALKKASPDGYDCYFDN-----VGG----EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHHHHCTTCEEEEEES-----SCH----HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHhCCCCeEEEEC-----CCh----HHHHHHHHHHhcCCEEEEE
Confidence 0001112579999987 332 2467788999999997654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.023 Score=53.56 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=69.1
Q ss_pred HHHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc-C-cC
Q 047022 175 VLIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL-K-PT 250 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l-~-~~ 250 (381)
.+.+...+++|++||-+|| |.|..+..+++..|++|++++.+++.++.+++. .|.. . .. |+.+. . .+
T Consensus 146 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~~---~--~~-d~~~~~~~~~ 216 (345)
T 2j3h_A 146 GFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGFD---D--AF-NYKEESDLTA 216 (345)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCCS---E--EE-ETTSCSCSHH
T ss_pred HHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCc---e--EE-ecCCHHHHHH
Confidence 3345667889999999997 468888888887899999999999877776532 2321 1 12 33221 0 00
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.....+.+|+|+.+ .+. ..++.+.++|+|+|++++.
T Consensus 217 ~~~~~~~~~~d~vi~~-----~g~----~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 217 ALKRCFPNGIDIYFEN-----VGG----KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HHHHHCTTCEEEEEES-----SCH----HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHhCCCCcEEEEC-----CCH----HHHHHHHHHHhcCCEEEEE
Confidence 0001112569999886 331 3677888999999997653
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0028 Score=60.03 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=68.7
Q ss_pred HHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+.+...+++|++||-+|+ |.|..+..+++..|++|++++.+++.++.+++. |.. .+... + .+.. +.+.
T Consensus 151 l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~---~v~~~-~-~~~~-~~v~ 220 (342)
T 4eye_A 151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GAD---IVLPL-E-EGWA-KAVR 220 (342)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEES-S-TTHH-HHHH
T ss_pred HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc---EEecC-c-hhHH-HHHH
Confidence 336677889999999997 458899999988899999999999888877763 322 12222 2 1110 0000
Q ss_pred cc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 EL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.. ....+|+|+.. ++. ..++.+.++|+++|++++.
T Consensus 221 ~~~~~~g~Dvvid~-----~g~----~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 221 EATGGAGVDMVVDP-----IGG----PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp HHTTTSCEEEEEES-----CC------CHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCceEEEEC-----Cch----hHHHHHHHhhcCCCEEEEE
Confidence 01 22379999976 332 2466788999999996653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.016 Score=55.01 Aligned_cols=100 Identities=13% Similarity=0.182 Sum_probs=66.7
Q ss_pred HHcCCCCC------CEEEEecCCc-hHHH-HHHH-HhcCCE-EEEEcCCHH---HHHHHHHHHHHcCCCCCeEEEEecCc
Q 047022 178 EKVKLVKG------QEVLEIGCGW-GTLA-IEIV-RQTGCK-YTGITLSEL---QLKYAEIKVKEAGLQDTSDYIFVITV 244 (381)
Q Consensus 178 ~~l~~~~~------~~VLDiGcG~-G~~~-~~la-~~~~~~-v~gvDis~~---~~~~a~~~~~~~gl~~~i~~~~~~d~ 244 (381)
+...+++| ++||-+|+|. |.++ ..++ +..|++ |++++.+++ .++.+++. |. +.... +-
T Consensus 160 ~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l----Ga----~~v~~-~~ 230 (357)
T 2b5w_A 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL----DA----TYVDS-RQ 230 (357)
T ss_dssp HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT----TC----EEEET-TT
T ss_pred HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc----CC----cccCC-Cc
Confidence 44556788 9999999975 8888 8999 777886 999999987 77777642 42 11111 11
Q ss_pred cccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.. + +... .+.+|+|+-. ++. ...++.+.++|+|+|+++..
T Consensus 231 ~~~~-~-i~~~-~gg~Dvvid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 231 TPVE-D-VPDV-YEQMDFIYEA-----TGF---PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp SCGG-G-HHHH-SCCEEEEEEC-----SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred cCHH-H-HHHh-CCCCCEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEE
Confidence 1111 0 1112 2479999876 432 34677889999999996654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.031 Score=53.22 Aligned_cols=103 Identities=21% Similarity=0.304 Sum_probs=68.5
Q ss_pred HHHHcCCCCCCEEEEec-C-CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCc
Q 047022 176 LIEKVKLVKGQEVLEIG-C-GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNM 252 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiG-c-G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l 252 (381)
+.+...+++|++||-+| + |.|..+..+++..|++|++++.+++.++.+++ .|.. .+. |+.+.. .+.+
T Consensus 155 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~---~~~~~~~~~~~ 224 (362)
T 2c0c_A 155 LKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD---RPI---NYKTEPVGTVL 224 (362)
T ss_dssp HHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEE---ETTTSCHHHHH
T ss_pred HHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc---EEE---ecCChhHHHHH
Confidence 33456788999999999 3 46999999998889999999999888877765 2432 111 222110 0000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+.+|+|+.. ++. ..++.+.++|+++|+++..
T Consensus 225 ~~~~~~g~D~vid~-----~g~----~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 225 KQEYPEGVDVVYES-----VGG----AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp HHHCTTCEEEEEEC-----SCT----HHHHHHHHHEEEEEEEEEC
T ss_pred HHhcCCCCCEEEEC-----CCH----HHHHHHHHHHhcCCEEEEE
Confidence 01112569999986 332 4677888999999996653
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.028 Score=53.22 Aligned_cols=103 Identities=20% Similarity=0.179 Sum_probs=68.4
Q ss_pred HHHHcCCCCCCEEEEec-CC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCc
Q 047022 176 LIEKVKLVKGQEVLEIG-CG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNM 252 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiG-cG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l 252 (381)
+.+...++++++||-+| +| .|..+..+++..|++|++++.+++.++.+++. |.. .+. |+.+... +.+
T Consensus 159 l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~~---~~~~~~~~~~~ 228 (353)
T 4dup_A 159 LFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GAK---RGI---NYRSEDFAAVI 228 (353)
T ss_dssp HTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEE---ETTTSCHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEE---eCCchHHHHHH
Confidence 33567788999999994 44 58888888888899999999999988887753 322 111 2222110 000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+.+|+|+.. .+. ..++.+.+.|+|+|++++.
T Consensus 229 ~~~~~~g~Dvvid~-----~g~----~~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 229 KAETGQGVDIILDM-----IGA----AYFERNIASLAKDGCLSII 264 (353)
T ss_dssp HHHHSSCEEEEEES-----CCG----GGHHHHHHTEEEEEEEEEC
T ss_pred HHHhCCCceEEEEC-----CCH----HHHHHHHHHhccCCEEEEE
Confidence 00113579999986 332 2466778899999996654
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.043 Score=51.80 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=67.5
Q ss_pred HHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC--cCCc
Q 047022 177 IEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK--PTNM 252 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~--~~~l 252 (381)
+....++++++||-+|+ |.|..+..+++..|++|++++.+++.++.+++ .|.. ... |+.+.. .+.+
T Consensus 162 l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~~-----~~~-d~~~~~~~~~~~ 231 (347)
T 2hcy_A 162 LKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGGE-----VFI-DFTKEKDIVGAV 231 (347)
T ss_dssp HHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTCC-----EEE-ETTTCSCHHHHH
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCCc-----eEE-ecCccHhHHHHH
Confidence 44557889999999998 46888888887778999999999887776654 2321 112 332110 0000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+.+|+|+.. .+. ...++.+.+.|+++|+++..
T Consensus 232 ~~~~~~~~D~vi~~-----~g~---~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 232 LKATDGGAHGVINV-----SVS---EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HHHHTSCEEEEEEC-----SSC---HHHHHHHTTSEEEEEEEEEC
T ss_pred HHHhCCCCCEEEEC-----CCc---HHHHHHHHHHHhcCCEEEEE
Confidence 00111269999886 322 35678889999999996654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0072 Score=57.19 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=66.9
Q ss_pred HHHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+...+++|++||-+|+ | .|..+..+++..|++|+++ .+++.++.+++. |... +. ... +..+.-. ..
T Consensus 143 ~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----Ga~~-i~-~~~-~~~~~~~---~~ 211 (343)
T 3gaz_A 143 VDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----GATP-ID-ASR-EPEDYAA---EH 211 (343)
T ss_dssp TTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----TSEE-EE-TTS-CHHHHHH---HH
T ss_pred HHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----CCCE-ec-cCC-CHHHHHH---HH
Confidence 36677889999999994 4 5889999998889999999 888887777653 4321 11 011 1111000 00
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+.. ++. ..+..+.++|+|+|+++..
T Consensus 212 ~~~~g~D~vid~-----~g~----~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 212 TAGQGFDLVYDT-----LGG----PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp HTTSCEEEEEES-----SCT----HHHHHHHHHEEEEEEEEES
T ss_pred hcCCCceEEEEC-----CCc----HHHHHHHHHHhcCCeEEEE
Confidence 122479999876 432 3567788899999997654
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.029 Score=54.51 Aligned_cols=61 Identities=8% Similarity=0.135 Sum_probs=49.5
Q ss_pred CCCCCCEEEEecCCchHHHHHHH-HhcC--CEEEEEcCCHHHHHHHHHHHHH--c-CCCCCeEEEEe
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIV-RQTG--CKYTGITLSELQLKYAEIKVKE--A-GLQDTSDYIFV 241 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la-~~~~--~~v~gvDis~~~~~~a~~~~~~--~-gl~~~i~~~~~ 241 (381)
.++++..|+||||+.|..+..++ +..+ .+|++++++|...+..++++.. + +..++++++..
T Consensus 223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~ 289 (409)
T 2py6_A 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 289 (409)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Confidence 35789999999999999999988 4322 6999999999999999999987 3 23157777765
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0089 Score=56.92 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=67.4
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc-CcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL-KPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l-~~~~l~~ 254 (381)
+...++++|++||-+|+|. |.++..+++..|++|++++.+++.++.+++. |.. .+ . |+.+. .. ...
T Consensus 172 l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v--~-~~~~~~~~--~~~ 239 (360)
T 1piw_A 172 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HY--I-ATLEEGDW--GEK 239 (360)
T ss_dssp HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EE--E-EGGGTSCH--HHH
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc----CCC---EE--E-cCcCchHH--HHH
Confidence 3447788999999999975 8888888888899999999999888887753 422 12 2 33221 10 000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.. +.+|+|+..-.- . ....++.+.++|+|+|+++..
T Consensus 240 ~~-~~~D~vid~~g~-----~-~~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 240 YF-DTFDLIVVCASS-----L-TDIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp SC-SCEEEEEECCSC-----S-TTCCTTTGGGGEEEEEEEEEC
T ss_pred hh-cCCCEEEECCCC-----C-cHHHHHHHHHHhcCCCEEEEe
Confidence 11 579999876221 0 012345567899999996653
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0051 Score=58.57 Aligned_cols=101 Identities=22% Similarity=0.199 Sum_probs=65.9
Q ss_pred HHHcCCC-CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLV-KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~-~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
+....++ +|++||-+|+|. |.++..+++..|++|++++.+++.++.+++. .|.. . +. |+.+.. .+..
T Consensus 172 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~---lGa~-~--vi---~~~~~~--~~~~ 240 (357)
T 2cf5_A 172 LSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQD---LGAD-D--YV---IGSDQA--KMSE 240 (357)
T ss_dssp HHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTT---SCCS-C--EE---ETTCHH--HHHH
T ss_pred HHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH---cCCc-e--ee---ccccHH--HHHH
Confidence 4556777 999999999975 8888888888899999999998877666522 2432 1 11 222110 0001
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. .+.+|+|+.. ++. ...++...++|+|+|+++..
T Consensus 241 ~-~~g~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 241 L-ADSLDYVIDT-----VPV---HHALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp S-TTTEEEEEEC-----CCS---CCCSHHHHTTEEEEEEEEEC
T ss_pred h-cCCCCEEEEC-----CCC---hHHHHHHHHHhccCCEEEEe
Confidence 1 1469999875 332 12345567899999997654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.025 Score=52.89 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=66.7
Q ss_pred HHcCCCCCC-EEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 178 EKVKLVKGQ-EVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~-~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
....+++++ +||-+|+ | .|..+..+++..|++|++++.+++.++.+++. |.. .+. |+.+...+.+..
T Consensus 143 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~l----Ga~---~v~---~~~~~~~~~~~~ 212 (330)
T 1tt7_A 143 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS---EVI---SREDVYDGTLKA 212 (330)
T ss_dssp HHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS---EEE---EHHHHCSSCCCS
T ss_pred HhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEE---ECCCchHHHHHH
Confidence 445678886 9999997 4 58888899888899999999998877777653 432 111 221110000011
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+.+|+|+.. ++. ..+..+.++|+|+|+++..
T Consensus 213 ~~~~~~d~vid~-----~g~----~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 213 LSKQQWQGAVDP-----VGG----KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp SCCCCEEEEEES-----CCT----HHHHHHHTTEEEEEEEEEC
T ss_pred hhcCCccEEEEC-----CcH----HHHHHHHHhhcCCCEEEEE
Confidence 223579999876 432 2577888999999997654
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0094 Score=55.83 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=66.3
Q ss_pred HHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccc
Q 047022 178 EKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~ 254 (381)
+...++++++||-.|+ |.|..+..+++..|++|++++.+++.++.+++. |.. .. . |+.+... +.+..
T Consensus 134 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g~~---~~--~-~~~~~~~~~~~~~ 203 (327)
T 1qor_A 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QV--I-NYREEDLVERLKE 203 (327)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EE--E-ETTTSCHHHHHHH
T ss_pred HhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EE--E-ECCCccHHHHHHH
Confidence 3567889999999993 468888888877799999999999888877652 321 11 2 3222110 00000
Q ss_pred -cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 -LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 -~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+.+. + ...++.+.++|+++|+++..
T Consensus 204 ~~~~~~~D~vi~~~-----g----~~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 204 ITGGKKVRVVYDSV-----G----RDTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp HTTTCCEEEEEECS-----C----GGGHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCceEEEECC-----c----hHHHHHHHHHhcCCCEEEEE
Confidence 1124699999873 2 23467788999999996654
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=56.04 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=70.0
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.......++++++||-+|+|. |.++..+++..|+ .++++|.+++.++.+++. |.. .+. |+.+....+.
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga~---~~i---~~~~~~~~~~ 220 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GAM---QTF---NSSEMSAPQM 220 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEE---ETTTSCHHHH
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CCe---EEE---eCCCCCHHHH
Confidence 456677888999999999986 7778888887776 568999999988877654 432 222 2222110000
Q ss_pred -cc-cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 253 -TE-LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 253 -~~-~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.. -....+|+|+.. ++. ...++.+.++|++||.+++..
T Consensus 221 ~~~~~~~~g~d~v~d~-----~G~---~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 221 QSVLRELRFNQLILET-----AGV---PQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp HHHHGGGCSSEEEEEC-----SCS---HHHHHHHHHHCCTTCEEEECC
T ss_pred HHhhcccCCccccccc-----ccc---cchhhhhhheecCCeEEEEEe
Confidence 00 022568888765 332 556778889999999976543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.048 Score=51.61 Aligned_cols=102 Identities=20% Similarity=0.137 Sum_probs=66.7
Q ss_pred HHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccc
Q 047022 178 EKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~ 254 (381)
+..+++++++||-+|+ |.|..+..+++..|++|++++.+++.++.+++. |.. . .. |+.+... +.+..
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~---~--~~-d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GAH---E--VF-NHREVNYIDKIKK 233 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---E--EE-ETTSTTHHHHHHH
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc----CCC---E--EE-eCCCchHHHHHHH
Confidence 4567889999999997 458888888887899999999999887766432 321 1 12 3322110 00000
Q ss_pred -cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 255 -LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 255 -~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.....+|+|+.+.. ...+..+.++|+|+|+++...
T Consensus 234 ~~~~~~~D~vi~~~G---------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 234 YVGEKGIDIIIEMLA---------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHCTTCEEEEEESCH---------HHHHHHHHHHEEEEEEEEECC
T ss_pred HcCCCCcEEEEECCC---------hHHHHHHHHhccCCCEEEEEe
Confidence 11247999998732 124567789999999976543
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0048 Score=56.60 Aligned_cols=106 Identities=14% Similarity=0.002 Sum_probs=76.1
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~~~~~fD~I 263 (381)
+..+||+=+|+|.+++.+.+. +.+++.+|.++..++..++++.. .+++++... |... +.. + .-+..+||+|
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~-D~~~~L~~--l-~~~~~~fdLV 163 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHT-DGVSKLNA--L-LPPPEKRGLI 163 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECS-CHHHHHHH--H-CSCTTSCEEE
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeC-cHHHHHHH--h-cCCCCCccEE
Confidence 457899999999999999884 78999999999999988888754 357999999 8643 210 0 0023579999
Q ss_pred EEchhhHhhChhcHHHHHHHHHh--ccccCceEEEEcCC
Q 047022 264 FICGMIEAVGHDYMEELFSCCES--LLAENGLSCSTVPD 300 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~--~LkpgG~~~i~~~~ 300 (381)
+.---.+.- .++...++.+.+ .+.|+|++++-.|-
T Consensus 164 fiDPPYe~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 164 FIDPSYERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp EECCCCCST--THHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred EECCCCCCC--cHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 997444321 245666666655 45689998887653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.021 Score=53.67 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=54.1
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
+..+++.. ..+|+.|||.-||+|+.+..+.+ .|.+.+|+|+++...+.+++++...+.. ...... |+.++.
T Consensus 242 ~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~-~gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~-~~~~i~ 312 (323)
T 1boo_A 242 PEFFIRML-TEPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLDNNIS--EEKITD-IYNRIL 312 (323)
T ss_dssp HHHHHHHH-CCTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHH-HHHHHH
T ss_pred HHHHHHHh-CCCCCEEEECCCCCCHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHH-HHHHHH
Confidence 44555544 47899999999999999988777 5999999999999999999998665532 444444 555543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.016 Score=57.00 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=67.2
Q ss_pred cCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc--------
Q 047022 180 VKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-------- 249 (381)
Q Consensus 180 l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-------- 249 (381)
..+++|++||-+|+ | .|.++..+++..|+++++++.+++.++.+++. |.. .++ |+.+.+.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l----Ga~---~vi---~~~~~d~~~~~~~~~ 293 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM----GAE---AII---DRNAEGYRFWKDENT 293 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCC---EEE---ETTTTTCCSEEETTE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh----CCc---EEE---ecCcCcccccccccc
Confidence 57789999999998 5 58999999988899999999999888888653 432 111 2211110
Q ss_pred ----------CCcccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 250 ----------TNMTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 250 ----------~~l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.+... ....+|+|+-. ++ ...++.+.++|+|+|++++.
T Consensus 294 ~~~~~~~~~~~~i~~~t~g~g~Dvvid~-----~G----~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 294 QDPKEWKRFGKRIRELTGGEDIDIVFEH-----PG----RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp ECHHHHHHHHHHHHHHHTSCCEEEEEEC-----SC----HHHHHHHHHHEEEEEEEEES
T ss_pred cchHHHHHHHHHHHHHhCCCCCcEEEEc-----CC----chhHHHHHHHhhCCcEEEEE
Confidence 000000 12579999875 43 14577788999999997764
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.049 Score=49.32 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=73.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh--------cCCEEEEEc-----CCHH-------------------HHHH
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--------TGCKYTGIT-----LSEL-------------------QLKY 222 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--------~~~~v~gvD-----is~~-------------------~~~~ 222 (381)
.+.+++.--|| .|+|+||-.|..+..++.. ...+|.++| +.+. ..+.
T Consensus 61 ~l~~~i~~vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~ 139 (257)
T 3tos_A 61 ALYRQVLDVPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAY 139 (257)
T ss_dssp HHHHHTTTSCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHH
T ss_pred HHHHHhhCCCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHH
Confidence 44555443455 8999999999888776542 246899998 3210 0111
Q ss_pred HHHHH------HHcCC-CCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 223 AEIKV------KEAGL-QDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 223 a~~~~------~~~gl-~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.++.+ ...+. .++|+++.+ ++.+.-+.-+...+..+||+|..-.-. + .....+++.+...|+|||+++
T Consensus 140 l~~~l~~~~~~~~~g~~~~~i~li~G-~~~dTL~~~l~~~~~~~~dlv~ID~D~-Y---~~t~~~le~~~p~l~~GGvIv 214 (257)
T 3tos_A 140 LKEVLDAHECSDFFGHVTQRSVLVEG-DVRETVPRYLAENPQTVIALAYFDLDL-Y---EPTKAVLEAIRPYLTKGSIVA 214 (257)
T ss_dssp HHHHHHHHHTTSTTTTSCCSEEEEES-CHHHHHHHHHHHCTTCCEEEEEECCCC-H---HHHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHhhhhhcCCCCCcEEEEEe-cHHHHHHHHHHhCCCCceEEEEEcCcc-c---chHHHHHHHHHHHhCCCcEEE
Confidence 22211 12344 478999999 986642110011234579999987532 1 235678999999999999988
Q ss_pred EEc
Q 047022 296 STV 298 (381)
Q Consensus 296 i~~ 298 (381)
+..
T Consensus 215 ~DD 217 (257)
T 3tos_A 215 FDE 217 (257)
T ss_dssp ESS
T ss_pred EcC
Confidence 864
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0044 Score=58.60 Aligned_cols=99 Identities=18% Similarity=0.145 Sum_probs=66.0
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCcccc
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTEL 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~~ 255 (381)
..++ +|++||-+|+|. |..+..+++..|+ +|++++.+++.++.+++. . + . .. |+.+... +.+...
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~--v~-~~~~~~~~~~~~~~ 227 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--R--LV-NPLEEDLLEVVRRV 227 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--E--EE-CTTTSCHHHHHHHH
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--h--cc-CcCccCHHHHHHHh
Confidence 6677 999999999975 8888888888888 899999998877766542 1 1 1 12 3322110 000001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+.. ++. ...++.+.++|+++|+++..
T Consensus 228 ~~~g~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 228 TGSGVEVLLEF-----SGN---EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp HSSCEEEEEEC-----SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 12469999876 332 35677888999999996654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.023 Score=53.63 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=66.5
Q ss_pred cCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCcccc-
Q 047022 180 VKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTEL- 255 (381)
Q Consensus 180 l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~~- 255 (381)
..++++++||-+|+ |.|..+..+++..|++|++++.+++.++.+++. |.. .+ . |+.+... +.+...
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----ga~---~~--~-d~~~~~~~~~~~~~~ 231 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL----GAD---ET--V-NYTHPDWPKEVRRLT 231 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EE--E-ETTSTTHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCC---EE--E-cCCcccHHHHHHHHh
Confidence 47789999999998 568899998888899999999999988877642 321 11 2 3322110 000001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+... + ...++.+.++|+++|+++..
T Consensus 232 ~~~~~d~vi~~~-----g----~~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 232 GGKGADKVVDHT-----G----ALYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TTTCEEEEEESS-----C----SSSHHHHHHHEEEEEEEEES
T ss_pred CCCCceEEEECC-----C----HHHHHHHHHhhccCCEEEEE
Confidence 124799999873 2 12466778899999996654
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.011 Score=56.24 Aligned_cols=101 Identities=20% Similarity=0.111 Sum_probs=66.0
Q ss_pred HHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccc
Q 047022 178 EKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~ 254 (381)
+...+++|++||-+|+ |.|..+..+++..|++|++++.+++.++.+++. |.. . .. |+.+... +.+..
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~~--~---~~-~~~~~~~~~~~~~ 225 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GAA--A---GF-NYKKEDFSEATLK 225 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS--E---EE-ETTTSCHHHHHHH
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc--E---EE-ecCChHHHHHHHH
Confidence 5567889999999984 468888888887899999999999888877443 321 1 12 2222110 00000
Q ss_pred -cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 -LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 -~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+.+ .+. ..++.+.++|+++|+++..
T Consensus 226 ~~~~~~~d~vi~~-----~G~----~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 226 FTKGAGVNLILDC-----IGG----SYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp HTTTSCEEEEEES-----SCG----GGHHHHHHHEEEEEEEEEC
T ss_pred HhcCCCceEEEEC-----CCc----hHHHHHHHhccCCCEEEEE
Confidence 112469999886 332 1456678899999997654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.032 Score=52.29 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCH---HHHHHHHHHHHHcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSE---LQLKYAEIKVKEAG 231 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~---~~~~~a~~~~~~~g 231 (381)
..+..++... ..+|+.|||.-||+|+.+..+.+ .|.+.+|+|+++ ..++.+++++...+
T Consensus 230 ~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~-~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 230 AVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHH-cCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 3344566555 37899999999999999988877 599999999999 99999999987654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.015 Score=54.58 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=66.9
Q ss_pred HHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccc
Q 047022 178 EKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~ 254 (381)
+...++++++||-+|+ |.|..+..+++..|++|++++.+++.++.+++. |.. . .. |+.+... +.+..
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g~~--~---~~-d~~~~~~~~~i~~ 208 (333)
T 1wly_A 139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----GCH--H---TI-NYSTQDFAEVVRE 208 (333)
T ss_dssp TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS--E---EE-ETTTSCHHHHHHH
T ss_pred HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC--E---EE-ECCCHHHHHHHHH
Confidence 4567889999999995 568888888887899999999999888777652 321 1 12 3222110 00000
Q ss_pred -cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 -LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 -~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+.+ .+. ..++.+.++|+|+|+++..
T Consensus 209 ~~~~~~~d~vi~~-----~g~----~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 209 ITGGKGVDVVYDS-----IGK----DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp HHTTCCEEEEEEC-----SCT----TTHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCCeEEEEC-----CcH----HHHHHHHHhhccCCEEEEE
Confidence 112469999976 331 3467788999999996654
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.015 Score=54.53 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=65.1
Q ss_pred HHcCCCCCC-EEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 178 EKVKLVKGQ-EVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~-~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
....+++++ +||-+|+ | .|..+..+++..|++|++++.+++.++.+++ .|.. .+. |+.+...+.+..
T Consensus 142 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~---~~i---~~~~~~~~~~~~ 211 (328)
T 1xa0_A 142 EEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK---EVL---AREDVMAERIRP 211 (328)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS---EEE---ECC---------
T ss_pred hhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc---EEE---ecCCcHHHHHHH
Confidence 445678886 9999997 4 5889999998889999999999887777754 2432 111 211110000001
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+.+|+|+.. ++. ..++.+.++|+++|++++.
T Consensus 212 ~~~~~~d~vid~-----~g~----~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 212 LDKQRWAAAVDP-----VGG----RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp CCSCCEEEEEEC-----STT----TTHHHHHHTEEEEEEEEEC
T ss_pred hcCCcccEEEEC-----CcH----HHHHHHHHhhccCCEEEEE
Confidence 223579999876 332 2466778899999997654
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.066 Score=52.36 Aligned_cols=105 Identities=17% Similarity=0.132 Sum_probs=66.8
Q ss_pred cCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc-C--------
Q 047022 180 VKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL-K-------- 248 (381)
Q Consensus 180 l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l-~-------- 248 (381)
..+++|++||-+|+ | .|..+..+++..|+++++++.+++.++.+++. |...-+..... |+.+. .
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~l----Ga~~~i~~~~~-~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRAL----GCDLVINRAEL-GITDDIADDPRRVVE 290 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCCCEEEHHHH-TCCTTGGGCHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCCEEEecccc-cccccccccccccch
Confidence 67889999999997 4 48888899988899999999999888877542 43211111111 11000 0
Q ss_pred -----cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 249 -----PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 249 -----~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.+.+.......+|+|+.. ++. ..++...++|+++|+++...
T Consensus 291 ~~~~~~~~v~~~~g~g~Dvvid~-----~G~----~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 291 TGRKLAKLVVEKAGREPDIVFEH-----TGR----VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEEC-----SCH----HHHHHHHHHSCTTCEEEESC
T ss_pred hhhHHHHHHHHHhCCCceEEEEC-----CCc----hHHHHHHHHHhcCCEEEEEe
Confidence 000000113569999986 332 35677788999999976643
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.031 Score=53.25 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=65.3
Q ss_pred HHHcCCC-CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLV-KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~-~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
+....+. +|++||-+|+|. |..+..+++..|++|++++.+++.++.+++. .|.. .+ . |+.+.. .+..
T Consensus 179 l~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---lGa~---~v--~-~~~~~~--~~~~ 247 (366)
T 1yqd_A 179 LKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN---FGAD---SF--L-VSRDQE--QMQA 247 (366)
T ss_dssp HHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT---SCCS---EE--E-ETTCHH--HHHH
T ss_pred HHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cCCc---eE--E-eccCHH--HHHH
Confidence 4456777 999999999975 8888888888899999999998877766532 2321 11 2 222210 0001
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. .+.+|+|+.. ++. ...++.+.++|+++|+++..
T Consensus 248 ~-~~~~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 248 A-AGTLDGIIDT-----VSA---VHPLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp T-TTCEEEEEEC-----CSS---CCCSHHHHHHEEEEEEEEEC
T ss_pred h-hCCCCEEEEC-----CCc---HHHHHHHHHHHhcCCEEEEE
Confidence 1 1479999876 332 11245567889999996653
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.18 Score=40.73 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=59.8
Q ss_pred CCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
..+|+=+|||. |......+...|..|+++|.+++.++.+++. .+.+..+ |..+.. .+....-..+|.|
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~--------g~~~i~g-d~~~~~--~l~~a~i~~ad~v 75 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER--------GVRAVLG-NAANEE--IMQLAHLECAKWL 75 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEES-CTTSHH--HHHHTTGGGCSEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc--------CCCEEEC-CCCCHH--HHHhcCcccCCEE
Confidence 35899999985 5444433333688999999999987766542 3667888 775432 0101122578998
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++. +++......+-...+.+.|+..++...
T Consensus 76 i~~-----~~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 76 ILT-----IPNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp EEC-----CSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred EEE-----CCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 876 443222333334556677887755443
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.087 Score=49.81 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=68.4
Q ss_pred HHHHHcCCCCC--CEEEEecC--CchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 175 VLIEKVKLVKG--QEVLEIGC--GWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 175 ~l~~~l~~~~~--~~VLDiGc--G~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
.+.+...++++ ++||-.|+ |.|..+..+++..|+ +|++++.+++.++.+++. .|.. ... |+.+...
T Consensus 149 al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~-----~~~-d~~~~~~ 219 (357)
T 2zb4_A 149 GIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD-----AAI-NYKKDNV 219 (357)
T ss_dssp HHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS-----EEE-ETTTSCH
T ss_pred HHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc-----eEE-ecCchHH
Confidence 33466778899 99999998 457888888877888 999999998877766542 2321 122 3322110
Q ss_pred -CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 250 -TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 250 -~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.+.....+.+|+|+.+ .+ ...++.+.++|+++|++++.
T Consensus 220 ~~~~~~~~~~~~d~vi~~-----~G----~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 220 AEQLRESCPAGVDVYFDN-----VG----GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHHHHHHCTTCEEEEEES-----CC----HHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHhcCCCCCEEEEC-----CC----HHHHHHHHHHhccCcEEEEE
Confidence 00000112369999986 33 24577888999999997653
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.019 Score=54.65 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=62.9
Q ss_pred cCCCCCCEEEEecCCc-hHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC-
Q 047022 180 VKLVKGQEVLEIGCGW-GTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF- 256 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~-G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~- 256 (381)
..+++|++||-+|+|. |.++..+++.. |++|++++.+++.++.+++. |.. .+. |+.+...+.+....
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi---~~~~~~~~~v~~~~~ 251 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD---HVV---DARRDPVKQVMELTR 251 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS---EEE---ETTSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCC---EEE---eccchHHHHHHHHhC
Confidence 6788999999999974 78888888887 99999999999888877642 422 112 22211000000111
Q ss_pred CCcccEEEEchhhHhhChhcHHH--HHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEE--LFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~--~l~~~~~~LkpgG~~~i~ 297 (381)
...+|+|+-. ++. .. .++...++ ++|+++..
T Consensus 252 g~g~Dvvid~-----~G~---~~~~~~~~~~~~--~~G~~v~~ 284 (359)
T 1h2b_A 252 GRGVNVAMDF-----VGS---QATVDYTPYLLG--RMGRLIIV 284 (359)
T ss_dssp TCCEEEEEES-----SCC---HHHHHHGGGGEE--EEEEEEEC
T ss_pred CCCCcEEEEC-----CCC---chHHHHHHHhhc--CCCEEEEE
Confidence 2379999976 432 22 45555565 99986653
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.15 Score=48.59 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=63.2
Q ss_pred CCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCccccCCCc
Q 047022 183 VKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTELFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~~~~~~ 259 (381)
++|++||-+|+ | .|.++..+++..|++|+++. +++.++.+++. |.. .++ |+.+.. .+.+.....+.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~l----Ga~---~vi---~~~~~~~~~~v~~~t~g~ 231 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSR----GAE---EVF---DYRAPNLAQTIRTYTKNN 231 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHT----TCS---EEE---ETTSTTHHHHHHHHTTTC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHc----CCc---EEE---ECCCchHHHHHHHHccCC
Confidence 78999999998 3 69999999998899998885 88777766543 432 122 222211 00001112345
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhcc-ccCceEEEEc
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLL-AENGLSCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~L-kpgG~~~i~~ 298 (381)
+|+|+-. ++. ...++.+.+.| +++|+++...
T Consensus 232 ~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 232 LRYALDC-----ITN---VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp CCEEEES-----SCS---HHHHHHHHHHSCTTCEEEEESS
T ss_pred ccEEEEC-----CCc---hHHHHHHHHHhhcCCCEEEEEe
Confidence 9999976 432 45567778888 6999976543
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.18 Score=47.60 Aligned_cols=102 Identities=23% Similarity=0.236 Sum_probs=59.9
Q ss_pred cCCCCC-CEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-----cCcCC
Q 047022 180 VKLVKG-QEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-----LKPTN 251 (381)
Q Consensus 180 l~~~~~-~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-----l~~~~ 251 (381)
..+++| ++||-+|+ | .|.++..+|+..|++++++.-+++.+...++.++..|.. .+. |+.+ +. +.
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi---~~~~~~~~~~~-~~ 234 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVI---TEDQNNSREFG-PT 234 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEE---EHHHHHCGGGH-HH
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe---EEE---ecCccchHHHH-HH
Confidence 478899 99999997 5 588999999888999888865544311111222233432 112 2211 10 00
Q ss_pred cccc---CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTEL---FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~---~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+... ..+.+|+|+-. ++. .... .+.++|+++|+++..
T Consensus 235 i~~~t~~~~~g~Dvvid~-----~G~---~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 235 IKEWIKQSGGEAKLALNC-----VGG---KSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHHHHHHTCCEEEEEES-----SCH---HHHH-HHHHTSCTTCEEEEC
T ss_pred HHHHhhccCCCceEEEEC-----CCc---hhHH-HHHHHhccCCEEEEe
Confidence 0001 12479999876 432 2233 567999999997654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.046 Score=52.16 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=61.0
Q ss_pred CCCCCEEEEec-CC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccccCCC
Q 047022 182 LVKGQEVLEIG-CG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTELFLG 258 (381)
Q Consensus 182 ~~~~~~VLDiG-cG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~~~~~ 258 (381)
+++|++||-+| || .|..+..+++..|++|++++ +++..+.+++ .|.. .+ . |+.+... +.+. ...
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~---~v--~-~~~~~~~~~~~~--~~~ 247 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRK----LGAD---DV--I-DYKSGSVEEQLK--SLK 247 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS---EE--E-ETTSSCHHHHHH--TSC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHH----cCCC---EE--E-ECCchHHHHHHh--hcC
Confidence 78999999999 45 58889999988899999988 6666665543 3432 11 1 2222110 0000 124
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+|+|+.. ++.. ...+....++|+++|+++..
T Consensus 248 g~D~vid~-----~g~~--~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 248 PFDFILDN-----VGGS--TETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp CBSEEEES-----SCTT--HHHHGGGGBCSSSCCEEEES
T ss_pred CCCEEEEC-----CCCh--hhhhHHHHHhhcCCcEEEEe
Confidence 69999876 3321 13456677899999997654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.07 E-value=0.035 Score=51.28 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=62.6
Q ss_pred CCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc---cCcCCccccC
Q 047022 182 LVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC---LKPTNMTELF 256 (381)
Q Consensus 182 ~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~---l~~~~l~~~~ 256 (381)
+++|++||-+|+ |.|..+..+++..|++|++++.+++.++.+++ .|.. .+ . |+.+ .. + ..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~--~-~~~~~~~~~-~---~~- 187 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EA--A-TYAEVPERA-K---AW- 187 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EE--E-EGGGHHHHH-H---HT-
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC---EE--E-ECCcchhHH-H---Hh-
Confidence 789999999998 45888888888889999999999888777754 2421 11 2 3322 11 0 01
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.+|+|+. -.- ..++.+.++|+|+|+++..
T Consensus 188 -~~~d~vid-~g~---------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 188 -GGLDLVLE-VRG---------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp -TSEEEEEE-CSC---------TTHHHHHTTEEEEEEEEEC
T ss_pred -cCceEEEE-CCH---------HHHHHHHHhhccCCEEEEE
Confidence 56999887 321 2456788999999996643
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.21 Score=47.18 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=58.3
Q ss_pred HHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEE-cCCHH---HHHHHHHHHHHcCCCCCeEEEEecC--ccccCc
Q 047022 178 EKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGI-TLSEL---QLKYAEIKVKEAGLQDTSDYIFVIT--VNCLKP 249 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gv-Dis~~---~~~~a~~~~~~~gl~~~i~~~~~~d--~~~l~~ 249 (381)
+...+++|++||-+|+ | .|.++..+|+..|++++++ +.++. ..+.++ ..|.. .+....+ ...+.
T Consensus 161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~- 232 (357)
T 1zsy_A 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAE---HVITEEELRRPEMK- 232 (357)
T ss_dssp HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCS---EEEEHHHHHSGGGG-
T ss_pred HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCc---EEEecCcchHHHHH-
Confidence 4457889999999997 4 5899999998888876655 44332 233333 33432 1221101 01111
Q ss_pred CCccccCC--CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 250 TNMTELFL--GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 250 ~~l~~~~~--~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.... +.+|+|+-. ++. ... ....++|+|+|+++..
T Consensus 233 ----~~~~~~~~~Dvvid~-----~g~---~~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 233 ----NFFKDMPQPRLALNC-----VGG---KSS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp ----GTTSSSCCCSEEEES-----SCH---HHH-HHHHTTSCTTCEEEEC
T ss_pred ----HHHhCCCCceEEEEC-----CCc---HHH-HHHHHhhCCCCEEEEE
Confidence 0111 259999876 432 222 3567999999997654
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.39 Score=46.07 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=37.8
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--------cCCEEEEEcCCHHHHHHHHHHH
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--------TGCKYTGITLSELQLKYAEIKV 227 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--------~~~~v~gvDis~~~~~~a~~~~ 227 (381)
....+.+.....-.|+|+|+|.|.++..+.+. ...+++.||+|+...+.=++++
T Consensus 70 ~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L 131 (387)
T 1zkd_A 70 ASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 131 (387)
T ss_dssp HHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence 33444555444557999999999998877653 1248999999998776444443
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.17 Score=48.47 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=53.5
Q ss_pred CEEEEecCCchHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc--ccCCCcccE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT--ELFLGNFST 262 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~--~~~~~~fD~ 262 (381)
.+|+|+-||.|++++-+.+. |.+ +.++|+++..++..+.+. ....+..+ |+.++..+.+. ......+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~------~~~~~~~~-DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINF------PRSLHVQE-DVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHC------TTSEEECC-CGGGCCHHHHHHHHCSCCCCCE
T ss_pred CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhC------CCCceEec-ChhhcCHHHHHhhcccCCCeeE
Confidence 58999999999999998875 776 569999999887777664 24677788 98887532210 002367999
Q ss_pred EEEc
Q 047022 263 VFIC 266 (381)
Q Consensus 263 Ivs~ 266 (381)
|+..
T Consensus 75 i~gg 78 (376)
T 3g7u_A 75 IIGG 78 (376)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9863
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.4 Score=40.37 Aligned_cols=97 Identities=19% Similarity=0.128 Sum_probs=55.4
Q ss_pred CCEEEEecCCc-hHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-CCCccc
Q 047022 185 GQEVLEIGCGW-GTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL-FLGNFS 261 (381)
Q Consensus 185 ~~~VLDiGcG~-G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~-~~~~fD 261 (381)
+.+|+=+|||. |......+... |.+|+++|.+++.++.+++ .| +.+..+ |..+.. .+... ....+|
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~g-d~~~~~--~l~~~~~~~~ad 107 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISG-DATDPD--FWERILDTGHVK 107 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEEC-CTTCHH--HHHTBCSCCCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEc-CCCCHH--HHHhccCCCCCC
Confidence 56899999985 44444434446 8899999999987665543 23 456667 664321 00011 135689
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+.. +++......+-...+.+.|++.++..
T Consensus 108 ~vi~~-----~~~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 108 LVLLA-----MPHHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp EEEEC-----CSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEEEe-----CCChHHHHHHHHHHHHHCCCCEEEEE
Confidence 99885 33222222223344555666665554
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.2 Score=47.57 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=64.4
Q ss_pred HcCCC--C-------CCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCH---HHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 179 KVKLV--K-------GQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSE---LQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 179 ~l~~~--~-------~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~---~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
...++ + |++||-+|+|. |..+..+++..|++|++++.++ +.++.+++. |.. .+ . . +
T Consensus 166 ~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~----ga~-~v--~-~-~-- 234 (366)
T 2cdc_A 166 QKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET----KTN-YY--N-S-S-- 234 (366)
T ss_dssp GGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH----TCE-EE--E-C-T--
T ss_pred ccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh----CCc-ee--c-h-H--
Confidence 56677 7 99999999954 7777778877889999999988 777766543 321 12 1 3 3
Q ss_pred ccCcCCccccCCCcccEEEEchhhHhhChhcHHHHH-HHHHhccccCceEEEE
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELF-SCCESLLAENGLSCST 297 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l-~~~~~~LkpgG~~~i~ 297 (381)
++. +.+.. ..+.+|+|+.. ++. ...+ +.+.+.|+++|+++..
T Consensus 235 ~~~-~~~~~-~~~~~d~vid~-----~g~---~~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 235 NGY-DKLKD-SVGKFDVIIDA-----TGA---DVNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp TCS-HHHHH-HHCCEEEEEEC-----CCC---CTHHHHHHGGGEEEEEEEEEC
T ss_pred HHH-HHHHH-hCCCCCEEEEC-----CCC---hHHHHHHHHHHHhcCCEEEEE
Confidence 211 00000 11569999876 332 2245 7788999999997654
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.62 Score=43.29 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=59.8
Q ss_pred CCEEEEecCCc-h-HHHHHHHHhcCC--EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCccccCCCc
Q 047022 185 GQEVLEIGCGW-G-TLAIEIVRQTGC--KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTELFLGN 259 (381)
Q Consensus 185 ~~~VLDiGcG~-G-~~~~~la~~~~~--~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~~~~~ 259 (381)
..+|.=||+|. | .++..+.+ .|. +|+++|.+++.++.+.+ .|.. .-... |..+ .- ..
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~-~G~~~~V~~~dr~~~~~~~a~~----~G~~---~~~~~-~~~~~~~---------~~ 94 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRR-SGFKGKIYGYDINPESISKAVD----LGII---DEGTT-SIAKVED---------FS 94 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHH----TTSC---SEEES-CTTGGGG---------GC
T ss_pred CCEEEEEeeCHHHHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHH----CCCc---chhcC-CHHHHhh---------cc
Confidence 36899999996 3 45555555 476 99999999987766553 3432 11223 4433 22 45
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.|+|+.. ++......+++++...|+|+..++
T Consensus 95 aDvVila-----vp~~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 95 PDFVMLS-----SPVRTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp CSEEEEC-----SCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred CCEEEEe-----CCHHHHHHHHHHHhhccCCCcEEE
Confidence 7999987 666667888899999999887654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.55 Score=37.54 Aligned_cols=70 Identities=21% Similarity=0.151 Sum_probs=44.5
Q ss_pred CCEEEEecCCc-hHHH-HHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 185 GQEVLEIGCGW-GTLA-IEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 185 ~~~VLDiGcG~-G~~~-~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
..+|+-+|||. |... ..+.+ .|.+|+++|.+++.++.+++. .+.+..+ |..+.. .+.......+|.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~-~g~~V~~id~~~~~~~~~~~~--------~~~~~~g-d~~~~~--~l~~~~~~~~d~ 73 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTA-AGKKVLAVDKSKEKIELLEDE--------GFDAVIA-DPTDES--FYRSLDLEGVSA 73 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHT--------TCEEEEC-CTTCHH--HHHHSCCTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHC--------CCcEEEC-CCCCHH--HHHhCCcccCCE
Confidence 45899999975 4322 23333 588999999999877665532 3667788 776532 111112357899
Q ss_pred EEEc
Q 047022 263 VFIC 266 (381)
Q Consensus 263 Ivs~ 266 (381)
|+..
T Consensus 74 vi~~ 77 (141)
T 3llv_A 74 VLIT 77 (141)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8875
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.18 Score=47.70 Aligned_cols=70 Identities=11% Similarity=0.161 Sum_probs=52.0
Q ss_pred CEEEEecCCchHHHHHHHHhcC--C-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTG--C-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~--~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+|||+.||.|++++.+.+. | . .|.++|+++..++..+.+.. ...+..+ |+.++.+.. +....+|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~-Di~~~~~~~---~~~~~~D~ 71 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAK-TIEGITLEE---FDRLSFDM 71 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECS-CGGGCCHHH---HHHHCCSE
T ss_pred CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhcc------ccccccC-CHHHccHhH---cCcCCcCE
Confidence 48999999999999999875 6 3 58999999998888887753 3456678 888775221 11125888
Q ss_pred EEEc
Q 047022 263 VFIC 266 (381)
Q Consensus 263 Ivs~ 266 (381)
|+..
T Consensus 72 l~~g 75 (343)
T 1g55_A 72 ILMS 75 (343)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8864
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=92.62 E-value=0.26 Score=46.19 Aligned_cols=67 Identities=9% Similarity=0.154 Sum_probs=50.7
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+.+|+|+.||.|++++.+.+. |.+ +.++|+++..++..+.+.... . .+ |+.++.+.. ...+|+|
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~-Di~~~~~~~-----~~~~D~l 75 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK-----P---EG-DITQVNEKT-----IPDHDIL 75 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC-----C---BS-CGGGSCGGG-----SCCCSEE
T ss_pred CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCC-----C---cC-CHHHcCHhh-----CCCCCEE
Confidence 469999999999999998875 765 678999999888888776321 1 57 888776321 2358988
Q ss_pred EEc
Q 047022 264 FIC 266 (381)
Q Consensus 264 vs~ 266 (381)
+..
T Consensus 76 ~~g 78 (327)
T 2c7p_A 76 CAG 78 (327)
T ss_dssp EEE
T ss_pred EEC
Confidence 864
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=4.9 Score=37.54 Aligned_cols=161 Identities=9% Similarity=0.023 Sum_probs=95.4
Q ss_pred CCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcC----------------------CCCCeEEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAG----------------------LQDTSDYI 239 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~g----------------------l~~~i~~~ 239 (381)
+...|+-+|||.=.....+... .+.++.=||. |+.++.=++.+...+ -.++.+++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4568999999988777777653 3567888887 444544333333210 13567888
Q ss_pred EecCccccCc--CCc--cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhh
Q 047022 240 FVITVNCLKP--TNM--TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKE 315 (381)
Q Consensus 240 ~~~d~~~l~~--~~l--~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~ 315 (381)
.+ |+++... +.| ..+..+.--++++-+++.+++++....+++.+.+...++..++..... .... ....+.+
T Consensus 169 ~~-DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE~i~-p~d~---fg~~M~~ 243 (334)
T 3iei_A 169 GA-DLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVN-MGDR---FGQIMIE 243 (334)
T ss_dssp EC-CTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEECC-TTSH---HHHHHHH
T ss_pred cc-ccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEeccC-CCCH---HHHHHHH
Confidence 88 8876320 000 012334556888888999999888999999999877544334332221 1111 1111111
Q ss_pred hc-cCCC------CCCCHHHHHHHHHhcCCcEEEEEEecchhH
Q 047022 316 YI-FPSG------CLPSLRRVTSAMTSSSRLCVEHLENIETHY 351 (381)
Q Consensus 316 yi-~pgg------~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y 351 (381)
.+ .-|. ..|++++..+.+. ++||......++..-|
T Consensus 244 ~l~~~g~pl~sl~~y~t~~~~~~r~~-~~Gw~~~~~~d~~~~~ 285 (334)
T 3iei_A 244 NLRRRQCDLAGVETCKSLESQKERLL-SNGWETASAVDMMELY 285 (334)
T ss_dssp HHHTTTCCCTTGGGGGCHHHHHHHHH-TTTCSEEEEEEHHHHH
T ss_pred HHHHhCCCCcccccCCCHHHHHHHHH-HcCCCcceeecHHHHH
Confidence 11 1122 2356677766665 5899988777776555
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.34 Score=39.69 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=55.1
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|+=+|||. |......+...|.+|+++|.+++.++.+++ . ..+.+..+ |..+.. .+.......+|
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~-d~~~~~--~l~~~~~~~ad 86 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVG-DAAEFE--TLKECGMEKAD 86 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEES-CTTSHH--HHHTTTGGGCS
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEe-cCCCHH--HHHHcCcccCC
Confidence 3678999999985 544444444468899999999875543321 1 13455666 654311 00001124689
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|+.. ++.......+..+.+.+.|...++...
T Consensus 87 ~Vi~~-----~~~~~~~~~~~~~~~~~~~~~~iv~~~ 118 (155)
T 2g1u_A 87 MVFAF-----TNDDSTNFFISMNARYMFNVENVIARV 118 (155)
T ss_dssp EEEEC-----SSCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred EEEEE-----eCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence 99886 433223333344444444544444443
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.42 Score=44.83 Aligned_cols=96 Identities=11% Similarity=0.064 Sum_probs=59.4
Q ss_pred CCC-CEEEEe-cCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCcccc-CC
Q 047022 183 VKG-QEVLEI-GCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTEL-FL 257 (381)
Q Consensus 183 ~~~-~~VLDi-GcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~~-~~ 257 (381)
+++ .+||=. |+| .|..+..+++..|++|++++.+++.++.+++. |.. .+. |+.+... +.+... ..
T Consensus 162 ~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~---~~~---~~~~~~~~~~v~~~~~~ 231 (349)
T 3pi7_A 162 QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDI----GAA---HVL---NEKAPDFEATLREVMKA 231 (349)
T ss_dssp HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHH----TCS---EEE---ETTSTTHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEE---ECCcHHHHHHHHHHhcC
Confidence 455 567655 555 48888888888899999999999888887653 421 122 2222110 000000 11
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+|+|+.. ++. ..+..+.++|+|+|++++.
T Consensus 232 ~g~D~vid~-----~g~----~~~~~~~~~l~~~G~iv~~ 262 (349)
T 3pi7_A 232 EQPRIFLDA-----VTG----PLASAIFNAMPKRARWIIY 262 (349)
T ss_dssp HCCCEEEES-----SCH----HHHHHHHHHSCTTCEEEEC
T ss_pred CCCcEEEEC-----CCC----hhHHHHHhhhcCCCEEEEE
Confidence 369999986 332 1236678899999997654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.54 E-value=3.5 Score=32.22 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=53.0
Q ss_pred CCEEEEecCCc-hHHH-HHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 185 GQEVLEIGCGW-GTLA-IEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 185 ~~~VLDiGcG~-G~~~-~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
+.+|+=+|||. |... ..+.+ .|.+|+++|.+++.++..++. . .+.+..+ |..+.. .+.......+|+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~---~----~~~~~~~-d~~~~~--~l~~~~~~~~d~ 72 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE-KGHDIVLIDIDKDICKKASAE---I----DALVING-DCTKIK--TLEDAGIEDADM 72 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHH---C----SSEEEES-CTTSHH--HHHHTTTTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHh---c----CcEEEEc-CCCCHH--HHHHcCcccCCE
Confidence 46899999875 3332 23333 588999999998766544332 1 3556666 654321 000011256899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+.. .+.......+..+.+.+.++ .+++.
T Consensus 73 vi~~-----~~~~~~~~~~~~~~~~~~~~-~ii~~ 101 (140)
T 1lss_A 73 YIAV-----TGKEEVNLMSSLLAKSYGIN-KTIAR 101 (140)
T ss_dssp EEEC-----CSCHHHHHHHHHHHHHTTCC-CEEEE
T ss_pred EEEe-----eCCchHHHHHHHHHHHcCCC-EEEEE
Confidence 8887 33222334445555667765 44443
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.26 Score=48.84 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=57.9
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
..+|++|+-+|+|. |......++..|++|+++|.++...+.+++ .|. + .. +..+.- ...
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~----~Ga----~--~~-~l~e~l---------~~a 330 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM----EGF----D--VV-TVEEAI---------GDA 330 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC----E--EC-CHHHHG---------GGC
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC----E--Ee-cHHHHH---------hCC
Confidence 46899999999986 666666666678999999999986655543 232 2 23 433322 458
Q ss_pred cEEEEchhhHhhChhcHHHHH-HHHHhccccCceEEEE
Q 047022 261 STVFICGMIEAVGHDYMEELF-SCCESLLAENGLSCST 297 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l-~~~~~~LkpgG~~~i~ 297 (381)
|+|+.. .+... .+ .+..+.+||||+++..
T Consensus 331 DvVi~a-----tgt~~---~i~~~~l~~mk~ggilvnv 360 (494)
T 3ce6_A 331 DIVVTA-----TGNKD---IIMLEHIKAMKDHAILGNI 360 (494)
T ss_dssp SEEEEC-----SSSSC---SBCHHHHHHSCTTCEEEEC
T ss_pred CEEEEC-----CCCHH---HHHHHHHHhcCCCcEEEEe
Confidence 998885 22211 12 2456778999986643
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.5 Score=43.60 Aligned_cols=74 Identities=18% Similarity=0.162 Sum_probs=53.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCE---EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCK---YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~---v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
+...+|+|+-||.|+++..+.+. |.+ |.++|+++...+..+.+.. ...+..+ |+.++.+..+.. .+.
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~-DI~~i~~~~i~~--~~~ 83 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVG-DVRSVTQKHIQE--WGP 83 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT------TCEEEEC-CGGGCCHHHHHH--TCC
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC------CCceeCC-ChHHccHHHhcc--cCC
Confidence 35579999999999999988774 654 5899999987776665531 3467788 998886432211 146
Q ss_pred ccEEEEc
Q 047022 260 FSTVFIC 266 (381)
Q Consensus 260 fD~Ivs~ 266 (381)
+|+++..
T Consensus 84 ~Dll~gg 90 (295)
T 2qrv_A 84 FDLVIGG 90 (295)
T ss_dssp CSEEEEC
T ss_pred cCEEEec
Confidence 8999874
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.97 E-value=1.5 Score=41.66 Aligned_cols=95 Identities=12% Similarity=0.132 Sum_probs=65.1
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD-TSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~-~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+.+||.|+.+.|.+++.++.. + ++.++=|--.....+.++..+++.. .+++.. ....++ ..||+
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~-~--~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~--~~~~~~---------~~~~~ 103 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH-K--PYSIGDSYISELATRENLRLNGIDESSVKFLD--STADYP---------QQPGV 103 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG-C--CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEE--TTSCCC---------SSCSE
T ss_pred CCCCEEEECCCCCHHHHhhccC-C--ceEEEhHHHHHHHHHHHHHHcCCCccceEecc--cccccc---------cCCCE
Confidence 5568999999999999988753 3 3444335555566777888888764 356543 333434 77999
Q ss_pred EEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEE
Q 047022 263 VFICGMIEAVGH--DYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 263 Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+.. +|+ ......+..+...|+||+.+++.
T Consensus 104 v~~~-----lpk~~~~l~~~L~~l~~~l~~~~~i~~~ 135 (375)
T 4dcm_A 104 VLIK-----VPKTLALLEQQLRALRKVVTSDTRIIAG 135 (375)
T ss_dssp EEEE-----CCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred EEEE-----cCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 8885 432 23566778888888999887654
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.79 E-value=1.8 Score=39.04 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=55.2
Q ss_pred EEEEecCCc-hH-HHHHHHHhcCC--EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC-ccc
Q 047022 187 EVLEIGCGW-GT-LAIEIVRQTGC--KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG-NFS 261 (381)
Q Consensus 187 ~VLDiGcG~-G~-~~~~la~~~~~--~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~-~fD 261 (381)
+|.=||+|. |. ++..+++ .|. +|+++|.+++.++.+++ .|... . ... |..+.. . ..|
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~-~g~~~~V~~~d~~~~~~~~~~~----~g~~~--~-~~~-~~~~~~---------~~~aD 64 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRR-SGFKGKIYGYDINPESISKAVD----LGIID--E-GTT-SIAKVE---------DFSPD 64 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHH----TTSCS--E-EES-CGGGGG---------GTCCS
T ss_pred EEEEEecCHHHHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHH----CCCcc--c-ccC-CHHHHh---------cCCCC
Confidence 688899985 43 3334444 465 89999999887765543 34321 1 123 333322 3 689
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+|+.. ++......+++++...++|+..++.
T Consensus 65 vVila-----vp~~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 65 FVMLS-----SPVRTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp EEEEC-----SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEc-----CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 99887 5555566778888888888875443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=0.71 Score=44.70 Aligned_cols=99 Identities=7% Similarity=0.013 Sum_probs=64.4
Q ss_pred CCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+.+|+=+|||. |......+...|..|+++|.+++.++.+++. .+.++.+ |..+.. -|....-...|+|
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~--------g~~vi~G-Dat~~~--~L~~agi~~A~~v 72 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF--------GMKVFYG-DATRMD--LLESAGAAKAEVL 72 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT--------TCCCEES-CTTCHH--HHHHTTTTTCSEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC--------CCeEEEc-CCCCHH--HHHhcCCCccCEE
Confidence 45799999975 4444443434688999999999988877642 3567888 876642 1111123678998
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
++. +++......+-...+.+.|+..++.-..
T Consensus 73 iv~-----~~~~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 73 INA-----IDDPQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp EEC-----CSSHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred EEC-----CCChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 886 4443445555666777788877666543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.77 E-value=1.8 Score=35.07 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=58.5
Q ss_pred CCEEEEecCCchHHHHHHHHh---cCCEEEEEcCC-HHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLS-ELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis-~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
..+|+=+|||. .+..+++. .|.+|+.+|.+ ++..+...+.. +..+.+..+ |..+.. .+....-...
T Consensus 3 ~~~vlI~G~G~--vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~g-d~~~~~--~l~~a~i~~a 72 (153)
T 1id1_A 3 KDHFIVCGHSI--LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPG-DSNDSS--VLKKAGIDRC 72 (153)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEES-CTTSHH--HHHHHTTTTC
T ss_pred CCcEEEECCCH--HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEc-CCCCHH--HHHHcChhhC
Confidence 45788888763 33333332 58899999997 45444333322 124788888 876432 1111123578
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
|.|++. .++...........+.+.|...++....
T Consensus 73 d~vi~~-----~~~d~~n~~~~~~a~~~~~~~~ii~~~~ 106 (153)
T 1id1_A 73 RAILAL-----SDNDADNAFVVLSAKDMSSDVKTVLAVS 106 (153)
T ss_dssp SEEEEC-----SSCHHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred CEEEEe-----cCChHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 999886 4433345555566666777777666543
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.54 E-value=1.5 Score=41.49 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=58.9
Q ss_pred CCEEEEecCCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH------cCCCCCeEEEEecCccccCcCCccccC
Q 047022 185 GQEVLEIGCGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKE------AGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 185 ~~~VLDiGcG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~------~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
..+|.=||+|. |. ++..+++ .|.+|+.++.+++.++..++.-.. ..++.++.+. . |..+.-
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~-~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~-d~~ea~-------- 97 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLAR-KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-C-DLKASL-------- 97 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-S-CHHHHH--------
T ss_pred CCeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-C-CHHHHH--------
Confidence 35899999994 54 4445555 478999999999877766553110 0111122221 2 332211
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
...|+|+.. ++......+++++...++|+..++
T Consensus 98 -~~aDvVila-----Vp~~~~~~vl~~i~~~l~~~~ivv 130 (356)
T 3k96_A 98 -EGVTDILIV-----VPSFAFHEVITRMKPLIDAKTRIA 130 (356)
T ss_dssp -TTCCEEEEC-----CCHHHHHHHHHHHGGGCCTTCEEE
T ss_pred -hcCCEEEEC-----CCHHHHHHHHHHHHHhcCCCCEEE
Confidence 457998887 665567888899988888876544
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=89.07 E-value=4.9 Score=36.35 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=55.0
Q ss_pred CEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE------ecCccccCcCCccccCC
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIF------VITVNCLKPTNMTELFL 257 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~------~~d~~~l~~~~l~~~~~ 257 (381)
.+|.=||+|. | .++..+++ .|.+|+.+|.+++.++..++. ++ .... . ......+..+. ..-
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~----g~----~~~~~~~~~~~-~~~~~~~~~~~-~~~ 72 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQ-GGNDVTLIDQWPAHIEAIRKN----GL----IADFNGEEVVA-NLPIFSPEEID-HQN 72 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHH----CE----EEEETTEEEEE-CCCEECGGGCC-TTS
T ss_pred CeEEEECcCHHHHHHHHHHHh-CCCcEEEEECCHHHHHHHHhC----CE----EEEeCCCeeEe-cceeecchhhc-ccC
Confidence 4799999985 4 33444555 488999999998877665543 32 1111 1 11100100000 001
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
..+|+|+.. ++......+++.+...++|+..++
T Consensus 73 ~~~d~vi~~-----v~~~~~~~v~~~l~~~l~~~~~iv 105 (316)
T 2ew2_A 73 EQVDLIIAL-----TKAQQLDAMFKAIQPMITEKTYVL 105 (316)
T ss_dssp CCCSEEEEC-----SCHHHHHHHHHHHGGGCCTTCEEE
T ss_pred CCCCEEEEE-----eccccHHHHHHHHHHhcCCCCEEE
Confidence 268999987 554456778888888888876544
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=1.6 Score=44.82 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=65.2
Q ss_pred CCCEEEEecCCchHHHHHHHHhc-----------C--CEEEEEcC---CHHHHHHHHH-----------HHHHcCCC---
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQT-----------G--CKYTGITL---SELQLKYAEI-----------KVKEAGLQ--- 233 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~-----------~--~~v~gvDi---s~~~~~~a~~-----------~~~~~gl~--- 233 (381)
+.-+|||+|-|+|...+...+.. . .++++++. +++.+..+-+ ........
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34589999999998777664431 1 35899998 7777763332 22221110
Q ss_pred ----------CCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChh-cHHHHHHHHHhccccCceEE
Q 047022 234 ----------DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD-YMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 234 ----------~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~~ 295 (381)
-.+++..+ |+.+.-+. +.......||+|+.-..-....++ --..+|+.+.++++|||.+.
T Consensus 146 ~~~~~~~~~~~~l~l~~g-d~~~~l~~-~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFG-DINELTSQ-LDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp EEEEEEGGGTEEEEEEES-CHHHHGGG-BCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecC-CHHHHHHh-cccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 12445667 76554211 000013679999985532222111 23678999999999999865
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=88.91 E-value=2.1 Score=41.57 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh---c---CCEEEEEcCCHHHHHHHHHHHHH
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ---T---GCKYTGITLSELQLKYAEIKVKE 229 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~---~---~~~v~gvDis~~~~~~a~~~~~~ 229 (381)
+..+.+.+. ..+|+|+|+|.|.++..+.+. . ..+++.||+|+...+.=++++..
T Consensus 129 ~~~~~~~~g---~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 129 VAQALDASG---TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp HHHHHHHHT---CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred HHHHHHhcC---CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 344444443 369999999999998887654 1 24899999999877766666653
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=88.66 E-value=2.5 Score=37.61 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=55.8
Q ss_pred CCEEEEecCCc-hH-HHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 185 GQEVLEIGCGW-GT-LAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 185 ~~~VLDiGcG~-G~-~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+.+|.=||||. |. ++..+++ .|.+ |..+|.+++..+.+.+.. + +.. .. +..+.. ...|
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~-~g~~~v~~~~~~~~~~~~~~~~~---g----~~~-~~-~~~~~~---------~~~D 70 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYR-KGFRIVQVYSRTEESARELAQKV---E----AEY-TT-DLAEVN---------PYAK 70 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSHHHHHHHHHHT---T----CEE-ES-CGGGSC---------SCCS
T ss_pred CCeEEEEcCCHHHHHHHHHHHH-CCCeEEEEEeCCHHHHHHHHHHc---C----Cce-eC-CHHHHh---------cCCC
Confidence 35799999985 43 3344444 4776 899999988766554432 2 222 23 444433 4579
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+|+.. +++.....+++.+...+++|..++.
T Consensus 71 vvi~a-----v~~~~~~~v~~~l~~~~~~~~ivv~ 100 (266)
T 3d1l_A 71 LYIVS-----LKDSAFAELLQGIVEGKREEALMVH 100 (266)
T ss_dssp EEEEC-----CCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred EEEEe-----cCHHHHHHHHHHHHhhcCCCcEEEE
Confidence 99987 5544456777888887877765443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=88.40 E-value=6.5 Score=40.47 Aligned_cols=163 Identities=11% Similarity=0.055 Sum_probs=91.5
Q ss_pred CCCEEEEecCCchHHHHHHHHh-c--------CCEEEEEcCCHHHHHHHHHHHHHcC-------------C-C-------
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-T--------GCKYTGITLSELQLKYAEIKVKEAG-------------L-Q------- 233 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~--------~~~v~gvDis~~~~~~a~~~~~~~g-------------l-~------- 233 (381)
+...|+-+|||.=.....+... . +.++.=+|.. +.++.=++.+.... + .
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p-~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYS-DLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECH-HHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccH-HHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 4568999999988888777653 2 4466667764 44443333333211 0 0
Q ss_pred --CCeEEEEecCccccCc--CCcc--cc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCC
Q 047022 234 --DTSDYIFVITVNCLKP--TNMT--EL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEH 306 (381)
Q Consensus 234 --~~i~~~~~~d~~~l~~--~~l~--~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~ 306 (381)
++..++.. |+++... +.+. .+ ..+.--++++-.++.+++.+....+++.+.+. |+|.+++-..-......
T Consensus 186 ~s~~y~~v~~-Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~ 262 (695)
T 2zwa_A 186 TTPKYLARPC-DLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKGPF 262 (695)
T ss_dssp ECSSEEEEEC-CTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTT
T ss_pred cCCCeeEEeC-cCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCC
Confidence 36778888 8887420 0000 11 22444567788899999988899999999864 66654432211110000
Q ss_pred CCchhh-hhhhc-----cCC-CCCCCHHHHHHHHHhcCCcEEEEEEecchhH
Q 047022 307 SLGPGF-IKEYI-----FPS-GCLPSLRRVTSAMTSSSRLCVEHLENIETHY 351 (381)
Q Consensus 307 ~~~~~~-i~~yi-----~pg-g~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y 351 (381)
...... ++..- +++ ...|++.+..+.+.+ .||..+...++..-|
T Consensus 263 d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~-~Gw~~v~~~~~~~~y 313 (695)
T 2zwa_A 263 EPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNK-LGFAYVNVGDMFQLW 313 (695)
T ss_dssp SHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHH-TTCCEEEEEEHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHH-CCCCCcceeeHHHHH
Confidence 000111 11111 111 135678777666664 899987777766544
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=0.65 Score=48.00 Aligned_cols=110 Identities=24% Similarity=0.255 Sum_probs=65.1
Q ss_pred CCCEEEEecCCchHHHHHHHHhc-----------C--CEEEEEcC---CHHHHHHHH-----------HHHHHc-----C
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQT-----------G--CKYTGITL---SELQLKYAE-----------IKVKEA-----G 231 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~-----------~--~~v~gvDi---s~~~~~~a~-----------~~~~~~-----g 231 (381)
+.-+|+|+|.|+|...+.+.+.. . .+++.++. +.+.+..+- +.+... |
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 44689999999998887765531 1 46899998 555554432 222211 1
Q ss_pred -----CCC---CeEEEEecCccccCcCCccccCCCcccEEEEchhhHhh-ChhcHHHHHHHHHhccccCceEE
Q 047022 232 -----LQD---TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAV-GHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 232 -----l~~---~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
+.+ .+++..+ |+.+.-+. +.......+|+++.-..-..- ++--...+|..+.++++|||.+.
T Consensus 138 ~~r~~~~~~~~~l~l~~g-d~~~~l~~-~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 208 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFG-DVNTLLPT-LDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFS 208 (689)
T ss_dssp EEEEEETTTTEEEEEEES-CHHHHGGG-CCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEcc-CHHHHHhh-cccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 111 4567778 87654311 000014689999985422111 11113688999999999999854
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=87.92 E-value=3.6 Score=37.15 Aligned_cols=84 Identities=11% Similarity=0.131 Sum_probs=54.6
Q ss_pred CEEEEecC-Cc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 186 QEVLEIGC-GW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 186 ~~VLDiGc-G~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+|.=||| |. | .++..+++ .|.+|+++|.+++.++.+.+ .|+. . . +..+.. ...|+
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~----~g~~----~--~-~~~~~~---------~~aDv 70 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHD-SAHHLAAIEIAPEGRDRLQG----MGIP----L--T-DGDGWI---------DEADV 70 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH-SSSEEEEECCSHHHHHHHHH----TTCC----C--C-CSSGGG---------GTCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHh----cCCC----c--C-CHHHHh---------cCCCE
Confidence 48999999 85 4 34444554 48899999999887665544 2321 1 2 222221 45899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
|+.. +++.....+++++...++|+..++
T Consensus 71 Vi~a-----v~~~~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 71 VVLA-----LPDNIIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp EEEC-----SCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred EEEc-----CCchHHHHHHHHHHHhCCCCCEEE
Confidence 9987 555556777888877888776543
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=87.83 E-value=0.37 Score=46.13 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=33.8
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHH
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEI 225 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~ 225 (381)
++.+|+=+|+|. |..+..+++..|++|+++|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 678999999996 667777777789999999999876665543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=87.81 E-value=3.2 Score=37.52 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=59.4
Q ss_pred CEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-------c--CCC--------CCeEEEEecCccc
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-------A--GLQ--------DTSDYIFVITVNC 246 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-------~--gl~--------~~i~~~~~~d~~~ 246 (381)
.+|.=||+|. | .++..+++ .|.+|+.+|.+++.++.+.+.+.. . ++. .+++. .. |..+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~-~~~~ 81 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAF-HGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SD-DLAQ 81 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ES-CHHH
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eC-CHHH
Confidence 4788899986 3 34444555 589999999999988887765321 1 111 01222 22 4333
Q ss_pred cCcCCccccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEE
Q 047022 247 LKPTNMTELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 247 l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~ 295 (381)
.- ...|+|+.. ++.. ....+++++...++|+..++
T Consensus 82 ~~---------~~aDlVi~a-----v~~~~~~~~~v~~~l~~~~~~~~il~ 118 (283)
T 4e12_A 82 AV---------KDADLVIEA-----VPESLDLKRDIYTKLGELAPAKTIFA 118 (283)
T ss_dssp HT---------TTCSEEEEC-----CCSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred Hh---------ccCCEEEEe-----ccCcHHHHHHHHHHHHhhCCCCcEEE
Confidence 22 457998876 4432 45678889999999887654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.43 E-value=2.2 Score=36.89 Aligned_cols=95 Identities=15% Similarity=-0.035 Sum_probs=56.7
Q ss_pred EEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+|+=+|+| .++..+++. .|..|+.+|.+++.++...+. ..+.+..+ |..+.. .+....-..+|.|
T Consensus 2 ~iiIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-------~~~~~i~g-d~~~~~--~l~~a~i~~ad~v 69 (218)
T 3l4b_C 2 KVIIIGGE--TTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-------LKATIIHG-DGSHKE--ILRDAEVSKNDVV 69 (218)
T ss_dssp CEEEECCH--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-------SSSEEEES-CTTSHH--HHHHHTCCTTCEE
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------cCCeEEEc-CCCCHH--HHHhcCcccCCEE
Confidence 57777875 444444433 588999999999877654432 13677888 876532 1111123578999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++. .++......+....+.+.|...++...
T Consensus 70 i~~-----~~~d~~n~~~~~~a~~~~~~~~iia~~ 99 (218)
T 3l4b_C 70 VIL-----TPRDEVNLFIAQLVMKDFGVKRVVSLV 99 (218)
T ss_dssp EEC-----CSCHHHHHHHHHHHHHTSCCCEEEECC
T ss_pred EEe-----cCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 886 444334445555555556666555433
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=87.28 E-value=0.61 Score=43.76 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=49.4
Q ss_pred CEEEEecCCchHHHHHHHHhcCC---EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGC---KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~---~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+++|+-||.|+++.-+.+. |. .+.++|+++...+.-+.+.. ...+..+ |+.++.++. ++...+|+
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~-DI~~~~~~~---~~~~~~D~ 72 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP------ETNLLNR-NIQQLTPQV---IKKWNVDT 72 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECC-CGGGCCHHH---HHHTTCCE
T ss_pred CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC------CCceecc-ccccCCHHH---hccCCCCE
Confidence 47999999999999988775 63 47899999998777766642 3445677 888776322 11235888
Q ss_pred EEE
Q 047022 263 VFI 265 (381)
Q Consensus 263 Ivs 265 (381)
++.
T Consensus 73 l~g 75 (333)
T 4h0n_A 73 ILM 75 (333)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=87.24 E-value=0.38 Score=45.93 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=59.1
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|+=+|+|. |..+...++..|++|+++|.+++.++.+++.. +. .+..... +..++. . .-...|+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~-~~~~l~-----~-~l~~aDv 234 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---CG--RIHTRYS-SAYELE-----G-AVKRADL 234 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SSEEEEC-CHHHHH-----H-HHHHCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---CC--eeEeccC-CHHHHH-----H-HHcCCCE
Confidence 578999999975 66666666667899999999998777665532 21 2222222 222221 0 0135899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+..-..... +...-+.++..+.+||||.++..
T Consensus 235 Vi~~~~~p~~--~t~~li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 235 VIGAVLVPGA--KAPKLVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp EEECCCCTTS--CCCCCBCHHHHTTSCTTCEEEEG
T ss_pred EEECCCcCCC--CCcceecHHHHhcCCCCcEEEEE
Confidence 9874221110 01111245567889999986644
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=87.17 E-value=0.36 Score=45.81 Aligned_cols=99 Identities=10% Similarity=0.096 Sum_probs=59.3
Q ss_pred CCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+.+|+=+|+|. |..+..+++..|++|+++|.+++.++.+++.... .+..... +..++.. .-..+|+|
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~-~~~~~~~------~~~~~DvV 234 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYS-NSAEIET------AVAEADLL 234 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEEC-CHHHHHH------HHHTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeC-CHHHHHH------HHcCCCEE
Confidence 48999999975 6666666666789999999999888777655421 2322222 2222210 01358999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+..-...... .+.-+.+...+.++|||.++..
T Consensus 235 I~~~~~~~~~--~~~li~~~~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 235 IGAVLVPGRR--APILVPASLVEQMRTGSVIVDV 266 (361)
T ss_dssp EECCCCTTSS--CCCCBCHHHHTTSCTTCEEEET
T ss_pred EECCCcCCCC--CCeecCHHHHhhCCCCCEEEEE
Confidence 8753322110 0011134566789999986654
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=87.15 E-value=4.6 Score=36.11 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=54.2
Q ss_pred EEEEecCCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 187 EVLEIGCGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 187 ~VLDiGcG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
+|.=||||. |. ++..+.+ .|.+|+++|.+++.++.+.+ .+... . ... +..+. ...|+|+
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~----~g~~~--~-~~~-~~~~~----------~~~D~vi 62 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVE----RQLVD--E-AGQ-DLSLL----------QTAKIIF 62 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHH----TTSCS--E-EES-CGGGG----------TTCSEEE
T ss_pred EEEEEcCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHh----CCCCc--c-ccC-CHHHh----------CCCCEEE
Confidence 678899985 33 3344444 47899999999887665532 34321 1 122 33221 4579998
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.. +++.....+++++...++|+..++
T Consensus 63 ~a-----v~~~~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 63 LC-----TPIQLILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp EC-----SCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred EE-----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 87 555556778888888888876543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=87.04 E-value=0.4 Score=44.09 Aligned_cols=61 Identities=11% Similarity=-0.012 Sum_probs=40.9
Q ss_pred CeEEEEecCccccCcCCccccCCCcccEEEEchhhHhh------------------ChhcHHHHHHHHHhccccCceEEE
Q 047022 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAV------------------GHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 235 ~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~------------------~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+++++.+ |..+... .+++++||+|++.--.... ....+..+++++.++|||||.+++
T Consensus 21 ~~~i~~g-D~~~~l~----~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i 95 (297)
T 2zig_A 21 VHRLHVG-DAREVLA----SFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVI 95 (297)
T ss_dssp CEEEEES-CHHHHHT----TSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEEC-cHHHHHh----hCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 6789999 9877321 2345789999985322100 001235678899999999999888
Q ss_pred EcCC
Q 047022 297 TVPD 300 (381)
Q Consensus 297 ~~~~ 300 (381)
..++
T Consensus 96 ~~~d 99 (297)
T 2zig_A 96 VVGD 99 (297)
T ss_dssp EECC
T ss_pred EECC
Confidence 7654
|
| >3cnu_A Predicted coding region AF_1534; structural GE MCSG, PSI-2, protein structure initiative, midwest center F structural genomics; 1.90A {Archaeoglobus fulgidus dsm 4304} PDB: 3bn8_A* | Back alignment and structure |
|---|
Probab=86.69 E-value=1.6 Score=33.70 Aligned_cols=64 Identities=9% Similarity=0.103 Sum_probs=42.7
Q ss_pred EEe-cCCeEEEecCCCCCCCCceEEEEeChHHHHHhhhcCCcchhHhhhcCceEeccchhhHHHHHHHH
Q 047022 12 FLE-ESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLNLFPIV 79 (381)
Q Consensus 12 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~~~ 79 (381)
+.+ .+|......+.. ..++++|++....+ .+++ .|.++...+||.|...++||...+..+..++
T Consensus 43 l~l~~~G~~~~~~~~~--~~ad~tl~~~~~~~-~~l~-~g~~~~~~a~~~gklki~Gd~~~~~~l~~ll 107 (116)
T 3cnu_A 43 VEYKSDGTCEFKEGVH--SSPTFTVVAPPDFW-LAVL-KGQEDPVSGFMMGKYRIEGNIMEAQRLAGVI 107 (116)
T ss_dssp EEECTTSCEEEEESCC--SSCSEEEECCHHHH-HHHH-TTSSCHHHHHHHTSSEEECCHHHHHHHHHHH
T ss_pred EEEccCCeEEEcCCCC--CCCCEEEEEeHHHH-HHHH-cCCCCHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence 344 677654333322 23678888766554 4444 6999999999999999999765555555443
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=86.69 E-value=0.81 Score=42.82 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=50.6
Q ss_pred CCEEEEecCCchHHHHHHHHhcC--C-EE-EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTG--C-KY-TGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~--~-~v-~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
..+++|+.||.|+++.-+.+. | . .+ .++|+++...+..+.+... . +..+ |+.++.++.+ +...+
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~------~-~~~~-DI~~~~~~~i---~~~~~ 77 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKE------E-VQVK-NLDSISIKQI---ESLNC 77 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCC------C-CBCC-CTTTCCHHHH---HHTCC
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCC------C-cccC-ChhhcCHHHh---ccCCC
Confidence 458999999999999988774 6 2 45 6999999988887777632 1 4567 8887763321 12368
Q ss_pred cEEEEc
Q 047022 261 STVFIC 266 (381)
Q Consensus 261 D~Ivs~ 266 (381)
|+++..
T Consensus 78 Dil~gg 83 (327)
T 3qv2_A 78 NTWFMS 83 (327)
T ss_dssp CEEEEC
T ss_pred CEEEec
Confidence 998864
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.51 E-value=5.2 Score=35.76 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=64.6
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCC------------HHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLS------------ELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis------------~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.+.+||-.|++.| .++..+++ .|++|+.+|.+ ...++.+.+.+...+ .++.+..+ |..+..
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-D~~~~~ 84 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAE-EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEV-DVRDRA 84 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEEC-CTTCHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHH-CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEc-cCCCHH
Confidence 4678998888654 34444555 48999999987 666666665555544 46888998 887642
Q ss_pred cCCcccc------CCCcccEEEEchhhHh----hChhcHH-----------HHHHHHHhccccCceEEEE
Q 047022 249 PTNMTEL------FLGNFSTVFICGMIEA----VGHDYME-----------ELFSCCESLLAENGLSCST 297 (381)
Q Consensus 249 ~~~l~~~------~~~~fD~Ivs~~~l~~----~~~~~~~-----------~~l~~~~~~LkpgG~~~i~ 297 (381)
.+... ..+..|++|.+..+.. ...+++. .+.+.+...++++|.++..
T Consensus 85 --~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 85 --AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp --HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred --HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 00000 0147899998654322 1122222 2345556666778885543
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.51 E-value=0.33 Score=45.63 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=58.6
Q ss_pred HHHHcCCCCCCEEEEecC-C-chHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 176 LIEKVKLVKGQEVLEIGC-G-WGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
+.+...+++|++||-+|+ | .|.++..+++.. +.+|++++ +++..+.++ .|.. .+... +. +.. +.+
T Consensus 134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~---~~~~~-~~-~~~-~~~ 201 (349)
T 4a27_A 134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVT---HLFDR-NA-DYV-QEV 201 (349)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSS---EEEET-TS-CHH-HHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCc---EEEcC-Cc-cHH-HHH
Confidence 345677889999999998 4 488888888875 57888887 555444443 2322 11111 11 100 000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+.+|+|+-. ++. . .++.+.++|+|+|++++.
T Consensus 202 ~~~~~~g~Dvv~d~-----~g~---~-~~~~~~~~l~~~G~~v~~ 237 (349)
T 4a27_A 202 KRISAEGVDIVLDC-----LCG---D-NTGKGLSLLKPLGTYILY 237 (349)
T ss_dssp HHHCTTCEEEEEEE-----CC-----------CTTEEEEEEEEEE
T ss_pred HHhcCCCceEEEEC-----CCc---h-hHHHHHHHhhcCCEEEEE
Confidence 01123579999976 332 1 236678999999997654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.48 E-value=0.68 Score=43.98 Aligned_cols=100 Identities=17% Similarity=0.136 Sum_probs=57.5
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|+=+|+|. |..+...++..|++|+++|.+++.++.+.+.. +. .+..... +..++. . .-..+|+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~-~~~~l~-----~-~~~~~Dv 232 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GG--RVITLTA-TEANIK-----K-SVQHADL 232 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SEEEEEC-CHHHHH-----H-HHHHCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---Cc--eEEEecC-CHHHHH-----H-HHhCCCE
Confidence 458999999974 55555555557999999999998776665432 22 2322222 222221 0 0146899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+..-..... ..+.-+.+.+.+.+||||.++..
T Consensus 233 Vi~~~g~~~~--~~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 233 LIGAVLVPGA--KAPKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp EEECCC---------CCSCHHHHTTSCTTCEEEEC
T ss_pred EEECCCCCcc--ccchhHHHHHHHhhcCCCEEEEE
Confidence 9876332210 00111246677888999986543
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=86.21 E-value=5 Score=37.18 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=55.7
Q ss_pred CEEEEecCCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeE------EEEecCccccCcCCccc
Q 047022 186 QEVLEIGCGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ---DTSD------YIFVITVNCLKPTNMTE 254 (381)
Q Consensus 186 ~~VLDiGcG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~---~~i~------~~~~~d~~~l~~~~l~~ 254 (381)
.+|.=||+|. |. ++..+++ .|.+|+.+|.+++.++..++.. ++. .... .... |..+.
T Consensus 5 mki~iiG~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~------- 72 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQRIKEIQDRG---AIIAEGPGLAGTAHPDLLTS-DIGLA------- 72 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHT---SEEEESSSCCEEECCSEEES-CHHHH-------
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcC---CeEEeccccccccccceecC-CHHHH-------
Confidence 5899999986 43 3444554 4889999999988776655431 110 0000 0111 22111
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+|+|+.. ++......+++.+...++++..++.
T Consensus 73 --~~~~D~vi~~-----v~~~~~~~~~~~l~~~l~~~~~vv~ 107 (359)
T 1bg6_A 73 --VKDADVILIV-----VPAIHHASIAANIASYISEGQLIIL 107 (359)
T ss_dssp --HTTCSEEEEC-----SCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred --HhcCCEEEEe-----CCchHHHHHHHHHHHhCCCCCEEEE
Confidence 1468998887 5545567788888888888765443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=86.16 E-value=0.36 Score=46.18 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=34.7
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHH
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEI 225 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~ 225 (381)
++.+|+=||+|. |..+...++..|++|+++|.+++.++.+++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 578999999996 667777777789999999999987776654
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=86.15 E-value=8.8 Score=35.25 Aligned_cols=94 Identities=20% Similarity=0.225 Sum_probs=56.9
Q ss_pred CCEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeEEEEecCc-cccCcCCccccCCC
Q 047022 185 GQEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ---DTSDYIFVITV-NCLKPTNMTELFLG 258 (381)
Q Consensus 185 ~~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~---~~i~~~~~~d~-~~l~~~~l~~~~~~ 258 (381)
..+|.-||+|. | .++..+++ .|..|+.+ .+++.++..++. |+. ....+...... .+.. ...
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~-~G~~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~~~~~-------~~~ 85 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLAR-AGHEVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSASSDPS-------AVQ 85 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHH-TTCEEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEESCGG-------GGT
T ss_pred CCcEEEECcCHHHHHHHHHHHH-CCCeEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeeeCCHH-------HcC
Confidence 46899999994 4 44455555 48899999 888877766543 321 00111100000 0111 125
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.+|+|+.. ++......+++.+...++|+..++.
T Consensus 86 ~~D~vila-----vk~~~~~~~l~~l~~~l~~~~~iv~ 118 (318)
T 3hwr_A 86 GADLVLFC-----VKSTDTQSAALAMKPALAKSALVLS 118 (318)
T ss_dssp TCSEEEEC-----CCGGGHHHHHHHHTTTSCTTCEEEE
T ss_pred CCCEEEEE-----cccccHHHHHHHHHHhcCCCCEEEE
Confidence 68998887 6555678889999999988866443
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=86.11 E-value=4.9 Score=36.23 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=54.6
Q ss_pred CEEEEecCCc-h-HHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+|.=||||. | .++..+++. .+.+|+++|.+++..+.+.+ .|.. ..... |..+.. ...|+
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~---~~~~~-~~~~~~---------~~aDv 69 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIV---DEATA-DFKVFA---------ALADV 69 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSC---SEEES-CTTTTG---------GGCSE
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCc---ccccC-CHHHhh---------cCCCE
Confidence 5799999996 3 344445543 26799999999887665543 2332 11223 333222 45799
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhc-cccCceEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESL-LAENGLSC 295 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~-LkpgG~~~ 295 (381)
|+.. ++......+++++... ++|+..++
T Consensus 70 Vila-----vp~~~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 70 IILA-----VPIKKTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp EEEC-----SCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred EEEc-----CCHHHHHHHHHHHHhcCCCCCCEEE
Confidence 8887 5554556777777777 77765544
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=85.63 E-value=1.1 Score=53.11 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=67.9
Q ss_pred HHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-
Q 047022 178 EKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE- 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~- 254 (381)
...++++|++||-.|+ |.|..++.+|+..|++|++++.+++..+.+++.....+.. .+... .-.+.. +.+..
T Consensus 1661 ~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~---~v~~~-~~~~~~-~~i~~~ 1735 (2512)
T 2vz8_A 1661 VRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDET---CFANS-RDTSFE-QHVLRH 1735 (2512)
T ss_dssp TTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCST---TEEES-SSSHHH-HHHHHT
T ss_pred HHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCce---EEecC-CCHHHH-HHHHHh
Confidence 4456789999999974 4589999999988999999999988877777643212221 11111 100000 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+.. ++ ...++...++|+|+|+++..
T Consensus 1736 t~g~GvDvVld~-----~g----~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1736 TAGKGVDLVLNS-----LA----EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp TTSCCEEEEEEC-----CC----HHHHHHHHTTEEEEEEEEEC
T ss_pred cCCCCceEEEEC-----CC----chHHHHHHHhcCCCcEEEEe
Confidence 022469999875 32 34578889999999996543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=85.54 E-value=7.3 Score=38.01 Aligned_cols=93 Identities=19% Similarity=0.238 Sum_probs=59.1
Q ss_pred CEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-------cC-C------CCCeEEEEecCccccCc
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-------AG-L------QDTSDYIFVITVNCLKP 249 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-------~g-l------~~~i~~~~~~d~~~l~~ 249 (381)
.+|.-||+|. | .++..+++ .|..|+.+|.+++.++.+++.+.. .| + .....+ .. |+..+
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~-~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~-~~~~~-- 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFAR-VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SS-STKEL-- 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ES-CGGGG--
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cC-CHHHH--
Confidence 5799999997 3 34555555 488999999999988877664321 11 0 001222 34 44322
Q ss_pred CCccccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEE
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i 296 (381)
...|+|+.. ++.. -...+++++...++|+.+++.
T Consensus 113 --------~~aDlVIea-----Vpe~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 113 --------STVDLVVEA-----VFEDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp --------TTCSEEEEC-----CCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --------CCCCEEEEc-----CCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 357998876 4321 136788889999988876554
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.50 E-value=8 Score=34.73 Aligned_cols=83 Identities=11% Similarity=0.080 Sum_probs=53.1
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc-Cc-CCc-ccc--
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL-KP-TNM-TEL-- 255 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l-~~-~~l-~~~-- 255 (381)
.+.+||=.|++.| .++..+++ .|++|+.++.++...+.+.+.+...+- .++.+..+ |..+. .. ..+ ...
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~-Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSS-NGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQL-DVTDPIATMSSLADFIKT 87 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEEC-CTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEc-cCCCcHHHHHHHHHHHHH
Confidence 4678888887654 23444454 489999999998877777666655432 47899999 88764 20 000 000
Q ss_pred CCCcccEEEEchhh
Q 047022 256 FLGNFSTVFICGMI 269 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l 269 (381)
..+..|++|.+..+
T Consensus 88 ~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 88 HFGKLDILVNNAGV 101 (311)
T ss_dssp HHSSCCEEEECCCC
T ss_pred hCCCCCEEEECCcc
Confidence 01479999987643
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=85.38 E-value=1.9 Score=39.92 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=50.3
Q ss_pred CEEEEecCCchHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
.+|||+-||-|+++.-+-+. |.+ +.++|+++...+.-+.+. .-.+..+ |+.++.+.. -...|+++
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~-------~~~~~~~-DI~~i~~~~-----~~~~D~l~ 66 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-------SAKLIKG-DISKISSDE-----FPKCDGII 66 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHC-------CSEEEES-CGGGCCGGG-----SCCCSEEE
T ss_pred CeEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-------CCCcccC-ChhhCCHhh-----CCcccEEE
Confidence 47999999999999888764 775 569999998777666553 2367788 999887432 24689888
Q ss_pred Ec
Q 047022 265 IC 266 (381)
Q Consensus 265 s~ 266 (381)
..
T Consensus 67 gg 68 (331)
T 3ubt_Y 67 GG 68 (331)
T ss_dssp CC
T ss_pred ec
Confidence 63
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=84.49 E-value=7.7 Score=35.21 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=58.2
Q ss_pred CEEEEecCCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH-------HcCCC--------------CCeEEEEec
Q 047022 186 QEVLEIGCGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVK-------EAGLQ--------------DTSDYIFVI 242 (381)
Q Consensus 186 ~~VLDiGcG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~-------~~gl~--------------~~i~~~~~~ 242 (381)
.+|.=||+|. |. ++..+++ .|.+|+.+|.+++.++.+++.+. ..|.- .++++ ..
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-~~- 92 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-ST- 92 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-ES-
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-ec-
Confidence 5799999996 43 5566666 48899999999998887655432 12211 02332 22
Q ss_pred CccccCcCCccccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEE
Q 047022 243 TVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 243 d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~ 295 (381)
|..+.- ...|+|+.. ++.. ....+++++...++|+..++
T Consensus 93 ~~~~~~---------~~aD~Vi~a-----vp~~~~~~~~v~~~l~~~~~~~~iv~ 133 (302)
T 1f0y_A 93 DAASVV---------HSTDLVVEA-----IVENLKVKNELFKRLDKFAAEHTIFA 133 (302)
T ss_dssp CHHHHT---------TSCSEEEEC-----CCSCHHHHHHHHHHHTTTSCTTCEEE
T ss_pred CHHHhh---------cCCCEEEEc-----CcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 333221 457998876 4421 13567888888888876543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=84.03 E-value=3.7 Score=37.48 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=53.2
Q ss_pred CCEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 185 GQEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 185 ~~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
..+|.=||+|. | .++..+++ .|.+|++.|.+++.++.+.+. |.. .... +..+.. ...|+
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~----g~~----~~~~-~~~e~~---------~~aDv 67 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLR-AGLSTWGADLNPQACANLLAE----GAC----GAAA-SAREFA---------GVVDA 67 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT----TCS----EEES-SSTTTT---------TTCSE
T ss_pred CCeEEEECCCHHHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHc----CCc----cccC-CHHHHH---------hcCCE
Confidence 35899999986 3 34445555 488999999999877665442 321 1233 444433 45799
Q ss_pred EEEchhhHhhChh-cHHHHH---HHHHhccccCceEE
Q 047022 263 VFICGMIEAVGHD-YMEELF---SCCESLLAENGLSC 295 (381)
Q Consensus 263 Ivs~~~l~~~~~~-~~~~~l---~~~~~~LkpgG~~~ 295 (381)
|+.. ++.. .....+ +.+...|+||..++
T Consensus 68 vi~~-----vp~~~~~~~v~~~~~~l~~~l~~g~ivv 99 (303)
T 3g0o_A 68 LVIL-----VVNAAQVRQVLFGEDGVAHLMKPGSAVM 99 (303)
T ss_dssp EEEC-----CSSHHHHHHHHC--CCCGGGSCTTCEEE
T ss_pred EEEE-----CCCHHHHHHHHhChhhHHhhCCCCCEEE
Confidence 8887 5432 234444 45556677766544
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=83.69 E-value=0.13 Score=54.39 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=59.8
Q ss_pred HcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccc-
Q 047022 179 KVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTE- 254 (381)
Q Consensus 179 ~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~- 254 (381)
..++++|++||-.|+ |.|..++.+++..|++|++++.++ ..+..+ .|.. .+ . |.++... +.+..
T Consensus 340 ~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~l~-----lga~---~v--~-~~~~~~~~~~i~~~ 407 (795)
T 3slk_A 340 LAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQAVE-----LSRE---HL--A-SSRTCDFEQQFLGA 407 (795)
T ss_dssp CTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGGSC-----SCGG---GE--E-CSSSSTHHHHHHHH
T ss_pred HhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhhhh-----cChh---he--e-ecCChhHHHHHHHH
Confidence 346789999999995 469999999999999999988554 222111 1211 11 1 2222110 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+.. ++. ..++...++|+|+|+++..
T Consensus 408 t~g~GvDvVld~-----~gg----~~~~~~l~~l~~~Gr~v~i 441 (795)
T 3slk_A 408 TGGRGVDVVLNS-----LAG----EFADASLRMLPRGGRFLEL 441 (795)
T ss_dssp SCSSCCSEEEEC-----CCT----TTTHHHHTSCTTCEEEEEC
T ss_pred cCCCCeEEEEEC-----CCc----HHHHHHHHHhcCCCEEEEe
Confidence 123579999986 332 2456788999999996654
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=82.93 E-value=2.8 Score=32.88 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=40.3
Q ss_pred CCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+.+|+=+|||. |......+...|.+|+.+|.+++..+.+++ . ...+..+ |..+.. .+.......+|+|
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~----~~~~~~~-d~~~~~--~l~~~~~~~~d~v 74 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y----ATHAVIA-NATEEN--ELLSLGIRNFEYV 74 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----T----CSEEEEC-CTTCHH--HHHTTTGGGCSEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----h----CCEEEEe-CCCCHH--HHHhcCCCCCCEE
Confidence 45799999864 433333333357889999998765443321 1 2455666 664321 1111112568999
Q ss_pred EEc
Q 047022 264 FIC 266 (381)
Q Consensus 264 vs~ 266 (381)
+..
T Consensus 75 i~~ 77 (144)
T 2hmt_A 75 IVA 77 (144)
T ss_dssp EEC
T ss_pred EEC
Confidence 876
|
| >3bkr_A Sterol carrier protein-2 like-3; mosquito, fatty acid, palmitic acid, cholesterol, lipid binding protein; HET: PLM; 1.40A {Aedes aegypti} PDB: 3bks_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=2.7 Score=33.23 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=36.4
Q ss_pred CCceEEEEeChHHHHHhhhcCCcchhHhhhcCceEeccchhhHHHHHHH
Q 047022 30 TLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLNLFPI 78 (381)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~~ 78 (381)
.++++|++.+..+. +++ .|.+.+-++||.|...++|+...+..+...
T Consensus 76 ~ad~tlt~~~~d~~-~l~-~G~l~~~~a~~~Gklki~Gd~~~a~kL~~~ 122 (126)
T 3bkr_A 76 RIDASITIDDNDFY-LVA-TKETSFAALIEQGKVDITGNKQAFLTLDEK 122 (126)
T ss_dssp GCCEEEEEEHHHHH-HHH-TTSSCHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred CCCEEEEEeHHHHH-HHH-cCCCCHHHHHHcCCEEEEcCHHHHHHHhhh
Confidence 47889999887654 454 699999999999999999976555555543
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.50 E-value=4.8 Score=35.96 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=52.1
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-----
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL----- 255 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~----- 255 (381)
.+.+||-.|++.| .++..+++ .|++|++++.++..++...+.+...+...++.+..+ |+.+.. .+...
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~~~~--~v~~~~~~~~ 106 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQ-QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRC-DLSNEE--DILSMFSAIR 106 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEEC-CTTCHH--HHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEe-cCCCHH--HHHHHHHHHH
Confidence 4568888887543 23334444 489999999998877766666666555456888888 886542 00000
Q ss_pred -CCCcccEEEEchh
Q 047022 256 -FLGNFSTVFICGM 268 (381)
Q Consensus 256 -~~~~fD~Ivs~~~ 268 (381)
..+.+|+||.+..
T Consensus 107 ~~~g~iD~vi~~Ag 120 (279)
T 1xg5_A 107 SQHSGVDICINNAG 120 (279)
T ss_dssp HHHCCCSEEEECCC
T ss_pred HhCCCCCEEEECCC
Confidence 0136899998654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=82.48 E-value=4.4 Score=39.50 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=56.6
Q ss_pred CEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc---CC---------CCCeEEEEecCccccCcCC
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA---GL---------QDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~---gl---------~~~i~~~~~~d~~~l~~~~ 251 (381)
.+|.=||+|. | .++..+++ .|.+|+++|.+++.++..++..... ++ ..++++. . |..+.-
T Consensus 3 mkI~VIG~G~vG~~lA~~La~-~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~-d~~ea~--- 76 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAE-LGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-T-EIEQAV--- 76 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-S-CHHHHG---
T ss_pred CEEEEECcCHHHHHHHHHHHh-cCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-C-CHHHHH---
Confidence 4788899985 3 34444555 4889999999998777665421000 00 1233322 2 333321
Q ss_pred ccccCCCcccEEEEchhhHhhChh----------cHHHHHHHHHhccccCceEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHD----------YMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~----------~~~~~l~~~~~~LkpgG~~~i 296 (381)
...|+|+.. ++.. ....+++.+...|++|-.++.
T Consensus 77 ------~~aDvViia-----Vptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~ 120 (450)
T 3gg2_A 77 ------PEADIIFIA-----VGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVT 120 (450)
T ss_dssp ------GGCSEEEEC-----CCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred ------hcCCEEEEE-----cCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEE
Confidence 356888876 4332 467788888888988766544
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=81.97 E-value=2.6 Score=34.77 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcC
Q 047022 167 VGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITL 215 (381)
Q Consensus 167 ~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDi 215 (381)
.+|+.-+...+....-.+| -|||+|-|.|..--++.+. ++.+|.++|-
T Consensus 24 taQR~~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR 72 (174)
T 3iht_A 24 VSQRACLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFER 72 (174)
T ss_dssp HHHHHHHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred HHHHHHHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence 4788888888888876665 7999999999999999887 7888999885
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=81.93 E-value=7.7 Score=34.25 Aligned_cols=109 Identities=12% Similarity=0.125 Sum_probs=64.7
Q ss_pred CCCEEEEecCC----ch-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc---
Q 047022 184 KGQEVLEIGCG----WG-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL--- 255 (381)
Q Consensus 184 ~~~~VLDiGcG----~G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~--- 255 (381)
.+.+||-.|++ -| .++..+++ .|++|+.++.++...+.+.+.....+- .++.+..+ |..+.. .+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~-D~~~~~--~v~~~~~~ 80 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHE-AGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPC-DVTNDA--EIETCFAS 80 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEEC-CCSSSH--HHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH-CCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeC-CCCCHH--HHHHHHHH
Confidence 46789999876 33 24555565 499999999887655655555544332 26889999 887643 10000
Q ss_pred ---CCCcccEEEEchhhHh----------hChhcHH-----------HHHHHHHhccccCceEEEE
Q 047022 256 ---FLGNFSTVFICGMIEA----------VGHDYME-----------ELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ---~~~~fD~Ivs~~~l~~----------~~~~~~~-----------~~l~~~~~~LkpgG~~~i~ 297 (381)
..+..|.++.+..+.. ...+++. .+.+.+...++++|.++..
T Consensus 81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 146 (266)
T 3oig_A 81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL 146 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 0146899887654321 2222222 2445666777778885543
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=81.74 E-value=3.2 Score=40.82 Aligned_cols=96 Identities=13% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCCEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH---cCC---------CCCeEEEEecCccccCc
Q 047022 184 KGQEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE---AGL---------QDTSDYIFVITVNCLKP 249 (381)
Q Consensus 184 ~~~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~---~gl---------~~~i~~~~~~d~~~l~~ 249 (381)
...+|.-||+|. | .++..+++ .|.+|+++|.+++.++..++.... .++ ..++.+. . |..+.-
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~-~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-t-d~~~a~- 82 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLAD-IGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-T-DIEAAV- 82 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-C-CHHHHH-
T ss_pred CCceEEEECcCHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-C-CHHHHh-
Confidence 457899999995 4 34455665 488999999999887766543100 000 0122221 2 322111
Q ss_pred CCccccCCCcccEEEEchhhHhhCh----------hcHHHHHHHHHhccccCceEEE
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGH----------DYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~----------~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...|+|+.. ++. .....+++.+...|+||..++.
T Consensus 83 --------~~aDvviia-----Vptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~ 126 (478)
T 2y0c_A 83 --------AHGDVQFIA-----VGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD 126 (478)
T ss_dssp --------HHCSEEEEC-----CCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred --------hcCCEEEEE-----eCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE
Confidence 346888876 443 4567788888899998766543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=81.43 E-value=13 Score=33.56 Aligned_cols=110 Identities=18% Similarity=0.188 Sum_probs=62.8
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHH-HHHHHHHHHHHcCCCCCeEEEEecCccccCcC-Cc-cc--c
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSEL-QLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT-NM-TE--L 255 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~-~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~-~l-~~--~ 255 (381)
.+++||-.|++.| .++..+++ .|++|+.++.++. ..+...+.....+ .++.+..+ |..+...- .+ .. .
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~-Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAK-EGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPG-DLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEES-CTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEEC-CCCCHHHHHHHHHHHHH
Confidence 4678999988654 34444555 4899999998765 3344444444333 46888998 88764200 00 00 0
Q ss_pred CCCcccEEEEchhh-------HhhChhcHH-----------HHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMI-------EAVGHDYME-----------ELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l-------~~~~~~~~~-----------~~l~~~~~~LkpgG~~~i~ 297 (381)
..+..|++|.+... +.+..+++. .+.+.+.+.++++|.++..
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 11468999976432 112222222 3455666777788886554
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=81.18 E-value=4.8 Score=35.00 Aligned_cols=97 Identities=9% Similarity=0.076 Sum_probs=58.6
Q ss_pred CCCEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
...+|+=+||| ..+..+++. .|. |+++|.+++.++.+. . .+.+..+ |..+.. .+....-...
T Consensus 8 ~~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~----~~~~i~g-d~~~~~--~l~~a~i~~a 72 (234)
T 2aef_A 8 KSRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR-----S----GANFVHG-DPTRVS--DLEKANVRGA 72 (234)
T ss_dssp --CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----T----TCEEEES-CTTCHH--HHHHTTCTTC
T ss_pred CCCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----c----CCeEEEc-CCCCHH--HHHhcCcchh
Confidence 44689999885 455555544 456 999999988665443 1 3778888 876432 1101123578
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|.|++. .+++..........+.+.|+..++....+
T Consensus 73 d~vi~~-----~~~d~~n~~~~~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 73 RAVIVD-----LESDSETIHCILGIRKIDESVRIIAEAER 107 (234)
T ss_dssp SEEEEC-----CSCHHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred cEEEEc-----CCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 998886 34333344455556667787676665543
|
| >1ikt_A Estradiol 17 beta-dehydrogenase 4; ALFA-beta fold, protein-triton X-100 complex, hydrophobic tunnel; HET: OXN; 1.75A {Homo sapiens} SCOP: d.106.1.1 | Back alignment and structure |
|---|
Probab=81.12 E-value=4.1 Score=31.53 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=36.4
Q ss_pred CCceEEEEeChHHHHHhhhcCCcchhHhhhcCceEeccchhhHHHHHHH
Q 047022 30 TLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLNLFPI 78 (381)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~~ 78 (381)
.++++|++.... |.+++ .|.+....+||.|...++||..-+..+..+
T Consensus 67 ~ad~tl~~~~~~-~~~l~-~G~~~~~~a~~~gklki~Gd~~~~~~l~~l 113 (120)
T 1ikt_A 67 AADTTIILSDED-FMEVV-LGKLDPQKAFFSGRLKARGNIMLSQKLQMI 113 (120)
T ss_dssp CCSEEEEEEHHH-HHHHH-TTSSCHHHHHHTTSSEEEESHHHHHHHHHH
T ss_pred CCCEEEEEEHHH-HHHHH-cCCCCHHHHHHcCCEEEECCHHHHHHHHHH
Confidence 478899988766 44555 589999999999999999976555555543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=80.78 E-value=10 Score=36.61 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=58.1
Q ss_pred HHHHHHcC-CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVK-LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~-~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+-+.+... .-.|.+|+-+|+|. |......++..|++|+++|+++.....+. ..| . ... +..+.-
T Consensus 208 ~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~----~~G----~--~v~-~Leeal--- 273 (435)
T 3gvp_A 208 DGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC----MDG----F--RLV-KLNEVI--- 273 (435)
T ss_dssp HHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTT----C--EEC-CHHHHT---
T ss_pred HHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH----HcC----C--Eec-cHHHHH---
Confidence 33444333 23789999999997 65555566658999999999986433332 222 1 223 444433
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...|+|+....-.++ +-.+..+.+|||++++-.
T Consensus 274 ------~~ADIVi~atgt~~l-------I~~e~l~~MK~gailINv 306 (435)
T 3gvp_A 274 ------RQVDIVITCTGNKNV-------VTREHLDRMKNSCIVCNM 306 (435)
T ss_dssp ------TTCSEEEECSSCSCS-------BCHHHHHHSCTTEEEEEC
T ss_pred ------hcCCEEEECCCCccc-------CCHHHHHhcCCCcEEEEe
Confidence 467998885211121 112456778999875543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=80.72 E-value=4.3 Score=35.72 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=49.4
Q ss_pred CCCEEEEecCCchHHHHHH----HHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC---
Q 047022 184 KGQEVLEIGCGWGTLAIEI----VRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF--- 256 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~l----a~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~--- 256 (381)
.+.+||=.|++ |.++..+ ++..|.+|+.++.++...+...+.+...+ .++.+..+ |..+.. .+..+.
T Consensus 3 ~~k~vlITGas-ggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~-Dl~~~~--~~~~~~~~~ 76 (276)
T 1wma_A 3 GIHVALVTGGN-KGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQL-DIDDLQ--SIRALRDFL 76 (276)
T ss_dssp CCCEEEESSCS-SHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEEC-CTTCHH--HHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEEC-CCCCHH--HHHHHHHHH
Confidence 45678877764 4444444 44148899999999877766666665543 46888998 887642 000000
Q ss_pred ---CCcccEEEEchh
Q 047022 257 ---LGNFSTVFICGM 268 (381)
Q Consensus 257 ---~~~fD~Ivs~~~ 268 (381)
.+..|+||.+..
T Consensus 77 ~~~~g~id~li~~Ag 91 (276)
T 1wma_A 77 RKEYGGLDVLVNNAG 91 (276)
T ss_dssp HHHHSSEEEEEECCC
T ss_pred HHhcCCCCEEEECCc
Confidence 136899987653
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=80.71 E-value=12 Score=33.20 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=46.8
Q ss_pred CEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++||=.|| |.++.++++. .|.+|++++-++........ .++++..+ |..++. ...+|.
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~-D~~d~~--------~~~~d~ 66 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLW-PGEEPS--------LDGVTH 66 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEES-SSSCCC--------CTTCCE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEe-cccccc--------cCCCCE
Confidence 58999996 6666665554 58899999998765433322 25899999 988743 256899
Q ss_pred EEEchhhH
Q 047022 263 VFICGMIE 270 (381)
Q Consensus 263 Ivs~~~l~ 270 (381)
|+......
T Consensus 67 vi~~a~~~ 74 (286)
T 3ius_A 67 LLISTAPD 74 (286)
T ss_dssp EEECCCCB
T ss_pred EEECCCcc
Confidence 99876543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=80.46 E-value=5.6 Score=33.84 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=51.4
Q ss_pred EEEEec-CCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCcccE
Q 047022 187 EVLEIG-CGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 187 ~VLDiG-cG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
+|+=+| +|. |. ++..+++ .+.+|+++|.+++..+...+..... +. .++. .. +..+.. ...|+
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~-~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~--~~-~~~~~~---------~~~D~ 67 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLAT-LGHEIVVGSRREEKAEAKAAEYRRI-AGDASIT--GM-KNEDAA---------EACDI 67 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHT-TTCEEEEEESSHHHHHHHHHHHHHH-HSSCCEE--EE-EHHHHH---------HHCSE
T ss_pred eEEEEcCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhccc-cccCCCC--hh-hHHHHH---------hcCCE
Confidence 678888 775 33 3334444 4789999999987766554432210 00 1233 23 333222 35799
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
|+.. ++......+++++...+ + |.++++..
T Consensus 68 Vi~~-----~~~~~~~~~~~~l~~~~-~-~~~vi~~~ 97 (212)
T 1jay_A 68 AVLT-----IPWEHAIDTARDLKNIL-R-EKIVVSPL 97 (212)
T ss_dssp EEEC-----SCHHHHHHHHHHTHHHH-T-TSEEEECC
T ss_pred EEEe-----CChhhHHHHHHHHHHHc-C-CCEEEEcC
Confidence 9886 44334456666666666 4 55555543
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.30 E-value=11 Score=34.67 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=50.7
Q ss_pred CEEEEecCCc-hH-HHHHHHHhcC-CEEEEEcCCHH---HHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 186 QEVLEIGCGW-GT-LAIEIVRQTG-CKYTGITLSEL---QLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 186 ~~VLDiGcG~-G~-~~~~la~~~~-~~v~gvDis~~---~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
.+|-=||+|. |. ++..+++ .| .+|++.|.+++ ..+...+.+...|. ... +..+.. ..
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~-~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~------~~~-s~~e~~---------~~ 87 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGG-RNAARLAAYDLRFNDPAASGALRARAAELGV------EPL-DDVAGI---------AC 87 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-TTCSEEEEECGGGGCTTTHHHHHHHHHHTTC------EEE-SSGGGG---------GG
T ss_pred CeEEEECccHHHHHHHHHHHH-cCCCeEEEEeCCCccccchHHHHHHHHHCCC------CCC-CHHHHH---------hc
Confidence 5899999985 43 4444554 48 89999999873 11112222233332 221 222222 34
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.|+|+.. ++.......++.+...|+||..++
T Consensus 88 aDvVi~a-----vp~~~~~~~~~~i~~~l~~~~ivv 118 (317)
T 4ezb_A 88 ADVVLSL-----VVGAATKAVAASAAPHLSDEAVFI 118 (317)
T ss_dssp CSEEEEC-----CCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred CCEEEEe-----cCCHHHHHHHHHHHhhcCCCCEEE
Confidence 6888886 555445556677777777776543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=80.22 E-value=7.7 Score=35.62 Aligned_cols=89 Identities=13% Similarity=0.155 Sum_probs=53.0
Q ss_pred CEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC------CCeEEE----EecCccccCcCCcc
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ------DTSDYI----FVITVNCLKPTNMT 253 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~------~~i~~~----~~~d~~~l~~~~l~ 253 (381)
.+|+=||+|. | .++..+++ .|..|+.++-++ .+..+ ..|+. ...++. .. |..+.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~-~g~~V~~~~r~~--~~~i~----~~Gl~~~~~~~g~~~~~~~~~~~-~~~~~------ 68 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAK-TGHCVSVVSRSD--YETVK----AKGIRIRSATLGDYTFRPAAVVR-SAAEL------ 68 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHH-TTCEEEEECSTT--HHHHH----HHCEEEEETTTCCEEECCSCEES-CGGGC------
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCh--HHHHH----hCCcEEeecCCCcEEEeeeeeEC-CHHHc------
Confidence 4799999995 4 34445555 488999999876 23332 22321 112210 01 11111
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+|+|+.. ++......+++.+...++|+..++.
T Consensus 69 ---~~~~DlVila-----vK~~~~~~~l~~l~~~l~~~t~Iv~ 103 (320)
T 3i83_A 69 ---ETKPDCTLLC-----IKVVEGADRVGLLRDAVAPDTGIVL 103 (320)
T ss_dssp ---SSCCSEEEEC-----CCCCTTCCHHHHHTTSCCTTCEEEE
T ss_pred ---CCCCCEEEEe-----cCCCChHHHHHHHHhhcCCCCEEEE
Confidence 1478999887 5544556788888888888876543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=80.13 E-value=7.8 Score=34.60 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=55.4
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC-c-c--ccC
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN-M-T--ELF 256 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~-l-~--~~~ 256 (381)
+|+.+|--|++.| ..+..+++ .|++|+.+|.+++.++.+.+.+...| .++.+..+ |..+...-. + . ...
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~-~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~-Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFAL-NDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKA-DVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEEC-CTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEc-cCCCHHHHHHHHHHHHHH
Confidence 4678888888776 34455555 49999999999999888888887765 46888888 887642000 0 0 001
Q ss_pred CCcccEEEEch
Q 047022 257 LGNFSTVFICG 267 (381)
Q Consensus 257 ~~~fD~Ivs~~ 267 (381)
-++.|++|.+.
T Consensus 82 ~G~iDiLVNNA 92 (254)
T 4fn4_A 82 YSRIDVLCNNA 92 (254)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 26789999765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 381 | ||||
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 2e-37 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 5e-35 | |
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 2e-34 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-16 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 3e-13 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 5e-10 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-09 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-08 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 2e-07 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-07 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 4e-07 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 5e-07 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 1e-06 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 2e-06 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 3e-06 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 5e-06 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-06 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 1e-05 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-05 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 5e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 8e-05 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 7e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 8e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 0.001 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 0.002 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 0.003 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 0.003 |
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 134 bits (337), Expect = 2e-37
Identities = 69/271 (25%), Positives = 109/271 (40%), Gaps = 24/271 (8%)
Query: 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVK 181
+ L +V YD S++ FF LFLD + TYSCA F+ L+ QI K+ + + K+
Sbjct: 1 DELKPHFANVQAHYDLSDD-FFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLG 59
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241
L G +L++GCGWG + V + G+TLS+ Q + + V + + +
Sbjct: 60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL- 118
Query: 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTV 298
E F + G E GH+ + FS LL +G L T
Sbjct: 119 ---------AGWEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 169
Query: 299 PDQCYDEHSLGP---------GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIET 349
P FI IFP G LPS+ V +++ ++++
Sbjct: 170 LHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRV-QSLQP 228
Query: 350 HYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
HY + L W + + +AL E + R
Sbjct: 229 HYAKTLDLWSAALQANKGQAIALQSEEVYER 259
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 128 bits (321), Expect = 5e-35
Identities = 66/258 (25%), Positives = 103/258 (39%), Gaps = 24/258 (9%)
Query: 135 YDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCG 194
YD S++ FF LF D + TYSCA F+ LE Q KV + ++K+ L G +L+IGCG
Sbjct: 4 YDVSDD-FFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCG 62
Query: 195 WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254
WGT V + G+TLS+ Q E + + + E
Sbjct: 63 WGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLL----------QGWE 112
Query: 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC--STVPDQCYD-------- 304
F + E GH+ ++ F C +++ +G S+V Y+
Sbjct: 113 DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKL 172
Query: 305 --EHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKF 362
E + FI IFP G LPS + + V ++ HY + LR W
Sbjct: 173 SFETARFIKFIVTEIFPGGRLPSTEMMVE-HGEKAGFTVPEPLSLRPHYIKTLRIWGDTL 231
Query: 363 REKHSEILALGFNEKFVR 380
+ + + + E + R
Sbjct: 232 QSNKDKAIEVTSEEVYNR 249
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 126 bits (317), Expect = 2e-34
Identities = 71/269 (26%), Positives = 107/269 (39%), Gaps = 18/269 (6%)
Query: 124 LTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLV 183
L V YD SNE FF L+LD SMTYSCA F+ LE Q K + ++K+ L
Sbjct: 2 LKPPVEAVRSHYDKSNE-FFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLE 60
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT 243
G +L+IGCGWG+ V + G+TLSE Q + + E D+ V
Sbjct: 61 PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDE---VDSPRRKEVRI 117
Query: 244 VNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPD 300
+ + + + G + + F +L ++G L T+PD
Sbjct: 118 QGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 177
Query: 301 QCYDEHSLGP---------GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHY 351
+ + FI IFP G LP + +V +S++ VE I +Y
Sbjct: 178 KEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVD-YYSSNAGWKVERYHRIGANY 236
Query: 352 YQKLRRWRQKFREKHSEILALGFNEKFVR 380
L W + E +AL ++
Sbjct: 237 VPTLNAWADALQAHKDEAIALKG-QETCD 264
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 75.4 bits (184), Expect = 3e-16
Identities = 32/228 (14%), Positives = 63/228 (27%), Gaps = 15/228 (6%)
Query: 157 IFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLS 216
I +S+H K + L +++ G +L++G G G + R G TGI +S
Sbjct: 6 ISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMS 65
Query: 217 ELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDY 276
L A+ + +E G+ + +I + G G
Sbjct: 66 SLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE--------KCDVAACVGATWIAGG-- 115
Query: 277 MEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSS 336
L G+ P + + + +L + A
Sbjct: 116 FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQAC-GVSSTSDFLTLPGLVGAFDDL 174
Query: 337 ----SRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
+ + E + + K R+ + A +
Sbjct: 175 GYDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNI 222
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (165), Expect = 3e-13
Identities = 32/274 (11%), Positives = 82/274 (29%), Gaps = 32/274 (11%)
Query: 35 LRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLNLFPIVIANQDLDSSTSKLKK 94
LR+ +P + L + D + + + + P DL +
Sbjct: 3 LRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIP------DLKLAME---- 52
Query: 95 SWGPSQNTSWLKPKKTKKYFFRHISRKN----TLTQARRHVSRLYDPSNELFFFLFLDKS 150
K+ + R + N ++ Q + ++ + L
Sbjct: 53 -----NYVLIDYDTKSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPST-GLLRHI 106
Query: 151 MTYSCAIFKSKHEDLEVG-----------QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLA 199
+ + E L V+ +I+++K+ +++G G G +
Sbjct: 107 LQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVV 166
Query: 200 IEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258
+++ T C + G+ +++ KYAE +E + ++E +
Sbjct: 167 LQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE 226
Query: 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENG 292
+ + + ++ + + E G
Sbjct: 227 RIANTSVIFVNNFAFGPEVDHQLKERFANMKEGG 260
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 57.5 bits (137), Expect = 5e-10
Identities = 35/252 (13%), Positives = 82/252 (32%), Gaps = 21/252 (8%)
Query: 136 DPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVK----LVKGQEVLEI 191
D S+ +F ++ + + +++ +R L ++ L + + L++
Sbjct: 15 DDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDL 74
Query: 192 GCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251
G G+G A +VR+ G + ++ +Q K + + + N
Sbjct: 75 GAGYGGAARFLVRKFGVSIDCLNIAPVQNKR----------NEEYNNQAGLADNITVKYG 124
Query: 252 MTELFLGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCSTVP--DQCYDEHSL 308
++ +A H ++F C +L G+ T P + D+ S+
Sbjct: 125 SFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI 184
Query: 309 GPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSE 368
P + + SL S + + + + + + ++ SE
Sbjct: 185 QP-ILDRIKLHD--MGSLGLYRSLAKECGLVTLRT-FSRPDSLVHHYSKVKAELIKRSSE 240
Query: 369 ILALGFNEKFVR 380
I + E
Sbjct: 241 IASFCSPEFQAN 252
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 54.3 bits (129), Expect = 3e-09
Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 13/191 (6%)
Query: 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTS 236
+ +V G VL CG + Q G G LSE ++ + E +
Sbjct: 13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQ 71
Query: 237 D-----YIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN 291
I + C +T +G+ + + + A+ D E E+L+ +
Sbjct: 72 GDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131
Query: 292 GLSCSTVPDQCYDEHS-----LGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLEN 346
+ + ++ + + + + + SS+R LE
Sbjct: 132 CSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGG-QDTLHSSARGLKAGLER 190
Query: 347 IETHYYQKLRR 357
++ H Y L R
Sbjct: 191 MDEHVYV-LER 200
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.2 bits (127), Expect = 2e-08
Identities = 12/103 (11%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAG 231
+S + ++ +L KG +++G G G ++ + GC G + + ++ +E
Sbjct: 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELK 264
Query: 232 LQDTSDYIFVITVNCLKPTNMTEL-----FLGNFSTVFICGMI 269
+ + + V + + + + + +
Sbjct: 265 KRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL 307
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (119), Expect = 2e-07
Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 10/129 (7%)
Query: 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
+ + + K + VL++GCG G L++ + K G+ SE L A ++ L+
Sbjct: 25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLE 83
Query: 234 DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293
DT I + E+ L I + L S +
Sbjct: 84 DTITLI---------KGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAK 134
Query: 294 SCSTVPDQC 302
S PD C
Sbjct: 135 GGSVYPDIC 143
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.9 bits (118), Expect = 2e-07
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 6/133 (4%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT 235
L+ ++ VL++ CG G +I +V + G T + S+ LKYA + +
Sbjct: 48 LLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPA 106
Query: 236 SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAV-----GHDYMEELFSCCESLLAE 290
D + N L G + + + + S++
Sbjct: 107 FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP 166
Query: 291 NGLSCSTVPDQCY 303
GL + Y
Sbjct: 167 GGLLVIDHRNYDY 179
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 4e-07
Identities = 28/253 (11%), Positives = 58/253 (22%), Gaps = 41/253 (16%)
Query: 142 FFFLFLDKSMTYSCAIFKSKHEDLEVGQIRK--VSVLIEKVK--LVKGQEVLEIGCGWGT 197
+ Y + ++ K + L + ++G +++IG G
Sbjct: 6 EYQKHFL-PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTI 64
Query: 198 LAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYI------------------ 239
+ + T ++ + E +K+
Sbjct: 65 YQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE 124
Query: 240 --------FVITVNCLKPTNMTELFLGNFSTVFICGMIEAVG--HDYMEELFSCCESLLA 289
V+ + + L V +E D SLL
Sbjct: 125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK 184
Query: 290 ENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIET 349
G +TV + P ++ S V A+ + +E L +
Sbjct: 185 PGGHLVTTVTLRL-------PSYMVGKREFSCVALEKGEVEQAVLDAG-FDIEQLLHSPQ 236
Query: 350 HYYQKLRRWRQKF 362
Y
Sbjct: 237 SYSVTNAANNGVC 249
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (115), Expect = 5e-07
Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 10/127 (7%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT 235
+I+ L K + VL++GCG G L++ + G+ +S ++ A+ V+ G D
Sbjct: 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDK 88
Query: 236 SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295
+ + ++ L I Y + + +
Sbjct: 89 ITLL---------RGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGG 139
Query: 296 STVPDQC 302
PD+C
Sbjct: 140 LIFPDKC 146
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 46.6 bits (109), Expect = 1e-06
Identities = 29/202 (14%), Positives = 52/202 (25%), Gaps = 20/202 (9%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT 235
L++ L +EVL++ G G +A K L+E LK
Sbjct: 7 LMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKV----------ARA 55
Query: 236 SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295
+ ++ + + I A S +L + G
Sbjct: 56 FIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL 115
Query: 296 STVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEH-LENIETHYYQK 354
+ D E+ Y+ R + ++ E E E H + K
Sbjct: 116 --LVDNSAPENDAFD-VFYNYVEKERDYSHHRAWKKSDW--LKMLEEAGFELEELHCFHK 170
Query: 355 ---LRRWRQKFREKHSEILALG 373
W + + L
Sbjct: 171 TFIFEDWCDRMNVTTEKKQELS 192
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 46.5 bits (109), Expect = 2e-06
Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 5/127 (3%)
Query: 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
+ LI +G VL++GCG G ++ R +Y G+ ++E+ + A ++ + +
Sbjct: 15 ACLIRLY-TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 73
Query: 234 DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293
+ + + + + + G
Sbjct: 74 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLR----PGGY 129
Query: 294 SCSTVPD 300
TVP
Sbjct: 130 FIMTVPS 136
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.9 bits (108), Expect = 3e-06
Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 10/129 (7%)
Query: 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
+ + L K + VL++G G G L + + K GI S + +I K L
Sbjct: 23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV-KANKLD 81
Query: 234 DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293
I + E+ L I Y L + +
Sbjct: 82 HVVTII---------KGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAP 132
Query: 294 SCSTVPDQC 302
PD+
Sbjct: 133 DGLIFPDRA 141
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 44.4 bits (104), Expect = 5e-06
Identities = 19/164 (11%), Positives = 49/164 (29%), Gaps = 21/164 (12%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL 232
+++ + K +++GCG G + +E+ + I + + E+ ++ GL
Sbjct: 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLEL-AGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 233 QDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG 292
D + + E + + G ++E+ + L G
Sbjct: 81 GDNVTLM---------EGDAPEALCKIPDIDIAV-VGGSGGE--LQEILRIIKDKLKPGG 128
Query: 293 ---LSCSTVPD-----QCYDEHSLGPGFIKEYIFPSGCLPSLRR 328
++ + +C + + I L
Sbjct: 129 RIIVTAILLETKFEAMECLRDLGFDVNITELNIARGRALDRGTM 172
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 44.6 bits (104), Expect = 8e-06
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSE 217
+ ++I+ + VL+IG G G A+ + G+ ++
Sbjct: 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATK 48
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 19/153 (12%), Positives = 39/153 (25%), Gaps = 12/153 (7%)
Query: 146 FLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLV--KGQEVLEIGCGWGTLAIEIV 203
+ Y A + V + + + KG VLE+G G A ++
Sbjct: 13 WGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQ 72
Query: 204 RQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263
++ I ++ + + V P G+F +
Sbjct: 73 EAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD-------GHFDGI 125
Query: 264 FICGMIEAVGH---DYMEELFSCCESLLAENGL 293
+ + + LL G+
Sbjct: 126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV 158
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 3e-05
Identities = 24/172 (13%), Positives = 57/172 (33%), Gaps = 11/172 (6%)
Query: 160 SKHEDLEVGQIRKVSVLIEKVKLVK-GQEVLEIGCGWGTLAIEIVRQT-------GCKYT 211
++H+ ++ +K+ +I ++ K ++L IG G G + ++I+ +
Sbjct: 15 TEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNE 74
Query: 212 GITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN-FSTVFICGMIE 270
+ S Q+ + V + + + + + + M E + + + M+
Sbjct: 75 VVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLY 134
Query: 271 AVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGC 322
V + SLL N V L + + C
Sbjct: 135 YV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLC 184
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 5e-05
Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 35/209 (16%)
Query: 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC--KYTGITLSELQLKYAEIKVKEAGLQ 233
++ + + G VLE G G G +++ + + G + + + A+ K
Sbjct: 90 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149
Query: 234 DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293
++ N FI I D F +
Sbjct: 150 WKLSHVEEWPDNV----------------DFIHKDISGATEDIKSLTFDAVALDMLN--- 190
Query: 294 SCSTVPDQCYDE--HSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHY 351
P L G + + + + + + L + + E
Sbjct: 191 -----PHVTLPVFYPHLKHGGV--CAVYVVNITQVIELLDGI-RTCELALSCEKISEV-- 240
Query: 352 YQKLRRWRQKFREKHSEILALGFNEKFVR 380
+R W ++ + ILA K
Sbjct: 241 --IVRDWLVCLAKQKNGILAQKVESKINT 267
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 41.2 bits (96), Expect = 8e-05
Identities = 22/193 (11%), Positives = 55/193 (28%), Gaps = 39/193 (20%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEA 230
S +I + L G ++LE+G G G ++ I+ T + E LK A + E
Sbjct: 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 133
Query: 231 GLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAE 290
+ + ++++++ S++
Sbjct: 134 YDIGNVRTSRSDIADFISDQM-----------YDAVIADIPDPWNHVQKIA----SMMKP 178
Query: 291 NGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETH 350
++ +P + ++++S +E +E ++
Sbjct: 179 GSVATFYLP----------------------NFDQSEKTVLSLSASGMHHLETVELMKRR 216
Query: 351 YYQKLRRWRQKFR 363
+ R
Sbjct: 217 ILVREGATRPASD 229
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 10/126 (7%)
Query: 168 GQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKV 227
G R S ++ K+V L++GCG G ++ + IK
Sbjct: 14 GLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIK- 72
Query: 228 KEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESL 287
+ + T F G + + ++ + + L + +
Sbjct: 73 ---------AAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRC 123
Query: 288 LAENGL 293
G
Sbjct: 124 TKPGGY 129
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 38.6 bits (89), Expect = 7e-04
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKE 229
S + + + +G +++ G G G + + R G K E K AE + +
Sbjct: 91 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 150
Query: 230 AGLQD 234
GL +
Sbjct: 151 WGLIE 155
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 38.3 bits (88), Expect = 8e-04
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 15/131 (11%)
Query: 173 VSVLIEKV-KLVKGQEVLEIGCGWGTLAIEIVR--QTGCKYTGITLSELQLKYAEIKVKE 229
VS L+ V K+ K +++ GCG+G L + ++ G KYTGI E L
Sbjct: 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE------- 67
Query: 230 AGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLA 289
+ L+ + + E + +
Sbjct: 68 ---ARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLH--MTTPETMLQKMIHSVK 122
Query: 290 ENGLSCSTVPD 300
+ G P
Sbjct: 123 KGGKIICFEPH 133
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 37.6 bits (86), Expect = 0.001
Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 15/120 (12%)
Query: 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIF 240
+ +LE+G G + ++ T + SE + + +
Sbjct: 17 PFFRPGNLLELGSFKGDFTSRL-QEHFNDITCVEASEEAISH-------------AQGRL 62
Query: 241 VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300
+ + + + + ++E + D + L + LAE G P+
Sbjct: 63 KDGITYIHSRFEDAQLPRRYDNIVLTHVLEHI-DDPVALLKRINDDWLAEGGRLFLVCPN 121
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.3 bits (86), Expect = 0.002
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 14/129 (10%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC--KYTGITLSELQLKYAEIKVKEA 230
+ ++ + + G VLE G G G L + ++R G + ++A V
Sbjct: 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC 144
Query: 231 GLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAE 290
Q + + M+ + ++ LL
Sbjct: 145 YGQPPD------NWRLVVSDLADSELPDGSVDRAVLDMLAP--WEVLDA----VSRLLVA 192
Query: 291 NGLSCSTVP 299
G+ V
Sbjct: 193 GGVLMVYVA 201
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 36.4 bits (83), Expect = 0.003
Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 29/187 (15%)
Query: 188 VLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246
+E+G G G + +Q Y GI + + L YA + ++V +
Sbjct: 35 HVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYA-LDKVLEVGVPNIKLLWVDGSDL 93
Query: 247 LKPTNMTELFLGNFSTVFI-CGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDE 305
E+ + + + +L ENG ++ E
Sbjct: 94 TDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFE 153
Query: 306 HSLG----PGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRR---- 357
+SL G ++ N+ T Y QK
Sbjct: 154 YSLVSFSQYGMKLNGVWLDLHASDFE-----------------GNVMTEYEQKFSNKGQV 196
Query: 358 -WRQKFR 363
+R +
Sbjct: 197 IYRVEAE 203
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.2 bits (83), Expect = 0.003
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAE 224
I + G+ V++ G G G LA T + ++ A+
Sbjct: 41 IYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAK 88
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 381 | |||
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 100.0 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.96 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.9 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.9 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.89 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.83 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.82 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.82 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.81 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.81 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.8 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.79 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.79 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.79 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.79 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.78 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.78 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.77 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.76 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.75 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.75 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.74 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.73 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.71 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.7 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.67 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.65 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.65 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.64 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.64 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.63 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.63 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.62 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.61 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.6 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.6 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.59 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.54 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.52 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.5 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.49 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.48 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.47 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.46 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.46 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.45 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.44 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.4 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.4 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.37 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.31 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.31 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.28 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.27 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.27 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.23 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.22 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.2 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.15 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.13 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.12 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.1 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.09 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.08 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.07 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.06 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.03 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.0 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.91 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.85 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.77 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.7 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.61 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.6 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.59 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.59 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.52 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.5 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.49 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.49 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.44 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.42 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.41 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.4 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.36 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.34 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.34 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.24 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.21 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.19 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.17 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.14 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.95 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.95 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.93 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.82 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.8 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.76 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.74 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.72 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.71 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.65 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.6 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.59 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.59 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.57 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.48 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.47 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.47 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.45 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.3 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.15 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.11 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.06 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.95 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.94 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.92 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.89 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.87 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.86 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.79 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.55 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.39 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.18 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.16 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.88 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.77 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.73 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.71 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.7 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.65 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.63 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.4 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 94.88 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.84 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.78 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 93.68 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.69 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.94 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 91.43 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.77 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 89.92 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 89.6 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 87.55 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 87.55 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 86.44 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 86.22 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 86.2 | |
| d1ikta_ | 115 | SCP2-like domain of MFE-2 {Human (Homo sapiens) [T | 85.99 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 85.72 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 85.09 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 84.47 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 83.92 | |
| d2cfua1 | 126 | Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI | 83.9 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.07 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 81.69 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 81.35 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 81.25 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 81.19 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.37 |
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=4.1e-53 Score=394.88 Aligned_cols=247 Identities=26% Similarity=0.453 Sum_probs=222.2
Q ss_pred CChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHH
Q 047022 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIE 201 (381)
Q Consensus 122 ~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~ 201 (381)
|+.+++.+||++|||++|+| |++++|++|+|||+||+.+.++|++||.++++.+++++.++||++|||||||||+++++
T Consensus 1 ~~~~~~~~~i~~HYD~~~~f-y~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~ 79 (285)
T d1kpga_ 1 DELKPHFANVQAHYDLSDDF-FRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMR 79 (285)
T ss_dssp CCSCCCHHHHHHHHTSCHHH-HTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHH
T ss_pred CCCCccHHHHHHhcCCcHHH-HHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHH
Confidence 45567788999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHH
Q 047022 202 IVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELF 281 (381)
Q Consensus 202 la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l 281 (381)
++++.|++|+|+++|++|++.|++++...|+.+++++..+ |+.+++ ++||.|+|+++++|++..+...++
T Consensus 80 ~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~-d~~~~~---------~~fD~i~si~~~eh~~~~~~~~~~ 149 (285)
T d1kpga_ 80 AVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-GWEQFD---------EPVDRIVSIGAFEHFGHERYDAFF 149 (285)
T ss_dssp HHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-CGGGCC---------CCCSEEEEESCGGGTCTTTHHHHH
T ss_pred HHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHh-hhhccc---------ccccceeeehhhhhcCchhHHHHH
Confidence 9999999999999999999999999999999999999999 998877 789999999999999988899999
Q ss_pred HHHHhccccCceEEEEcC---CCCC--C-------CCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecch
Q 047022 282 SCCESLLAENGLSCSTVP---DQCY--D-------EHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIET 349 (381)
Q Consensus 282 ~~~~~~LkpgG~~~i~~~---~~~~--~-------~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~ 349 (381)
+++.++|||||++++.+- .... . ......+||++||||||.+|++.++...++ .+||+|+++++++.
T Consensus 150 ~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e-~agf~v~~~~~~~~ 228 (285)
T d1kpga_ 150 SLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECAS-ANGFTVTRVQSLQP 228 (285)
T ss_dssp HHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHH-TTTCEEEEEEECHH
T ss_pred HHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHH-Hhchhhcccccchh
Confidence 999999999999665321 1110 0 111235799999999999999999977665 58999999999999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHhcCCCccccc
Q 047022 350 HYYQKLRRWRQKFREKHSEILALGFNEKFVR 380 (381)
Q Consensus 350 ~y~~tl~~W~~~f~~~~~~~~~~g~~~~f~r 380 (381)
||++|++.|+++|.++++++.++++++.|.|
T Consensus 229 hYarTl~~W~~~f~~~~~ei~~~~~~~~~rr 259 (285)
T d1kpga_ 229 HYAKTLDLWSAALQANKGQAIALQSEEVYER 259 (285)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999966665544
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3e-52 Score=390.11 Aligned_cols=243 Identities=27% Similarity=0.401 Sum_probs=217.6
Q ss_pred HHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh
Q 047022 126 QARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ 205 (381)
Q Consensus 126 ~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~ 205 (381)
++.++|++|||++|+| |++|+|++|+|||+||+.+.++|++||.++++.+++++++++|++|||||||||++++++|++
T Consensus 4 ~~~~~i~~HYD~~~~f-y~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~ 82 (291)
T d1kpia_ 4 PPVEAVRSHYDKSNEF-FKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAE 82 (291)
T ss_dssp CCHHHHHHHHTSCHHH-HHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred CcHhHHHHhcCCCHHH-HHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHh
Confidence 4568999999999999 999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhCh-------hcHH
Q 047022 206 TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH-------DYME 278 (381)
Q Consensus 206 ~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~-------~~~~ 278 (381)
.|++|+|+|+|++|++.+++++...++.+++++... |+...+ ++||.|+|++|++|+++ ++++
T Consensus 83 ~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~-d~~~~~---------~~fD~i~sie~~eH~~~~~~~~~~~~~~ 152 (291)
T d1kpia_ 83 YDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-GWEEFD---------EPVDRIVSLGAFEHFADGAGDAGFERYD 152 (291)
T ss_dssp HCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEEC-CGGGCC---------CCCSEEEEESCGGGTTCCSSCCSTTHHH
T ss_pred cCcceeeccchHHHHHHHHHHHHhhccchhhhhhhh-cccccc---------cccceEeechhHHhcchhhhhhHHHHHH
Confidence 899999999999999999999999999999999999 886544 88999999999999975 5789
Q ss_pred HHHHHHHhccccCceEEEE---cCCCCCC---------CCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 047022 279 ELFSCCESLLAENGLSCST---VPDQCYD---------EHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLEN 346 (381)
Q Consensus 279 ~~l~~~~~~LkpgG~~~i~---~~~~~~~---------~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~ 346 (381)
.+|+++.++|||||++++. .++..+. ......+|+++||||||.+|++.++...++ ++||+|+++++
T Consensus 153 ~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e-~~gl~v~~~~~ 231 (291)
T d1kpia_ 153 TFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSS-NAGWKVERYHR 231 (291)
T ss_dssp HHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHH-HHTCEEEEEEE
T ss_pred HHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhc-ccccccceeee
Confidence 9999999999999996653 3322111 112234699999999999999999977765 48999999999
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHhcCCCcccccC
Q 047022 347 IETHYYQKLRRWRQKFREKHSEILALGFNEKFVRT 381 (381)
Q Consensus 347 ~~~~y~~tl~~W~~~f~~~~~~~~~~g~~~~f~r~ 381 (381)
++.||++||+.|+++|.++++++.++ ++++|+||
T Consensus 232 ~~~hYa~TL~~W~~~f~~~~~ei~~l-~g~~~~r~ 265 (291)
T d1kpia_ 232 IGANYVPTLNAWADALQAHKDEAIAL-KGQETCDI 265 (291)
T ss_dssp CGGGHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHh-cChHHHHH
Confidence 99999999999999999999999999 55667775
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.2e-51 Score=384.88 Aligned_cols=237 Identities=25% Similarity=0.430 Sum_probs=214.8
Q ss_pred hhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEE
Q 047022 132 SRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYT 211 (381)
Q Consensus 132 ~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~ 211 (381)
++|||++|+| |++|+|++|+|||+||+++.++|++||.++++.+++++.++||++|||||||||.++.+++++.|++|+
T Consensus 1 qaHYD~~~~f-y~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~ 79 (280)
T d2fk8a1 1 QAHYDVSDDF-FALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVI 79 (280)
T ss_dssp GGGGCCCHHH-HTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEE
T ss_pred CCCccCcHHH-HHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEE
Confidence 4799999999 999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC
Q 047022 212 GITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN 291 (381)
Q Consensus 212 gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg 291 (381)
|+|+|++|++.|++++...++..++.+... |+++++ ++||.|++++|++|++++++..+|+++.++||||
T Consensus 80 gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~-d~~~~~---------~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg 149 (280)
T d2fk8a1 80 GLTLSKNQHARCEQVLASIDTNRSRQVLLQ-GWEDFA---------EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD 149 (280)
T ss_dssp EEESCHHHHHHHHHHHHTSCCSSCEEEEES-CGGGCC---------CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred EecchHHHHHHHHHHHHhhccccchhhhhh-hhhhhc---------cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC
Confidence 999999999999999999999889999999 988776 7899999999999999889999999999999999
Q ss_pred ceEEEEcC--CCCCCC----------CCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHHH
Q 047022 292 GLSCSTVP--DQCYDE----------HSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWR 359 (381)
Q Consensus 292 G~~~i~~~--~~~~~~----------~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~ 359 (381)
|++++... ...+.. .....+||++|||||+.+|+.+++.+.+++ +||+++++++++.||++||+.|+
T Consensus 150 G~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~-aGf~v~~~~~~~~hYa~TL~~W~ 228 (280)
T d2fk8a1 150 GRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEK-AGFTVPEPLSLRPHYIKTLRIWG 228 (280)
T ss_dssp CEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHH-TTCBCCCCEECHHHHHHHHHHHH
T ss_pred ceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhhhHHh-hccccceeeecccCHHHHHHHHH
Confidence 99776431 111110 112347999999999999999999877765 89999999999999999999999
Q ss_pred HHHHHhHHHHHhcCCCccccc
Q 047022 360 QKFREKHSEILALGFNEKFVR 380 (381)
Q Consensus 360 ~~f~~~~~~~~~~g~~~~f~r 380 (381)
++|+++++++.++++++.|.|
T Consensus 229 ~~f~~~~~~i~~~~~~~~~r~ 249 (280)
T d2fk8a1 229 DTLQSNKDKAIEVTSEEVYNR 249 (280)
T ss_dssp HHHHHTHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999987776654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.96 E-value=4.2e-29 Score=232.26 Aligned_cols=232 Identities=16% Similarity=0.214 Sum_probs=185.3
Q ss_pred HHHHhhhhhcCC--Cccccccccc-CCCCceeecccCCC--CCCHHHHHHHHHHHHHHHc----CCCCCCEEEEecCCch
Q 047022 126 QARRHVSRLYDP--SNELFFFLFL-DKSMTYSCAIFKSK--HEDLEVGQIRKVSVLIEKV----KLVKGQEVLEIGCGWG 196 (381)
Q Consensus 126 ~~~~~i~~~Yd~--~~~~~y~~~l-~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l----~~~~~~~VLDiGcG~G 196 (381)
..++++..+||. .+.| |+..+ +++++ .++|..+ ..++.+++.+..+.+++.+ .++++.+|||||||+|
T Consensus 3 ~~~~~~~~~y~~~~~~~f-y~~~w~g~~~h--~G~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G 79 (282)
T d2o57a1 3 TVKDNAEIYYDDDDSDRF-YFHVWGGEDIH--VGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG 79 (282)
T ss_dssp HHHHHHHHTHHHHHHHHH-HHHHHTTSCCC--SCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTS
T ss_pred hHHHHHHHhcCCchhHHH-HHHHcCCCCce--eeecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCc
Confidence 456778899997 7788 86655 55555 5889754 4567888877766665554 6889999999999999
Q ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhc
Q 047022 197 TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDY 276 (381)
Q Consensus 197 ~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~ 276 (381)
.++..++++++++|+|+|+|+.|++.|+++....|+.+++++..+ |+.+++ +++++||+|++..+++|++ +
T Consensus 80 ~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~-d~~~l~------~~~~sfD~V~~~~~l~h~~--d 150 (282)
T d2o57a1 80 GAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG-SFLEIP------CEDNSYDFIWSQDAFLHSP--D 150 (282)
T ss_dssp HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC-CTTSCS------SCTTCEEEEEEESCGGGCS--C
T ss_pred HHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccc-cccccc------ccccccchhhccchhhhcc--C
Confidence 999999987889999999999999999999999999999999999 999988 6679999999999999994 6
Q ss_pred HHHHHHHHHhccccCceEEEEcCCCCCCC-CCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecchhHHHHH
Q 047022 277 MEELFSCCESLLAENGLSCSTVPDQCYDE-HSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKL 355 (381)
Q Consensus 277 ~~~~l~~~~~~LkpgG~~~i~~~~~~~~~-~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl 355 (381)
+..+++++.++|||||+++++.+...... ......+...+..+ .+++..++.+.+. ++||+.+.+.+...++..++
T Consensus 151 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~l~-~~Gf~~i~~~d~~~~~~~~~ 227 (282)
T d2o57a1 151 KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLH--DMGSLGLYRSLAK-ECGLVTLRTFSRPDSLVHHY 227 (282)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCS--SCCCHHHHHHHHH-HTTEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccC--CCCCHHHHHHHHH-HcCCceEEEEECcHhHHHHH
Confidence 89999999999999999888754322111 11223344444333 4567777755554 59999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhc
Q 047022 356 RRWRQKFREKHSEILAL 372 (381)
Q Consensus 356 ~~W~~~f~~~~~~~~~~ 372 (381)
..|...+.++..++...
T Consensus 228 ~~~~~~~~~~~~~~~~~ 244 (282)
T d2o57a1 228 SKVKAELIKRSSEIASF 244 (282)
T ss_dssp HHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999888887766554
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.90 E-value=2.8e-24 Score=192.90 Aligned_cols=163 Identities=15% Similarity=0.075 Sum_probs=126.3
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
+.++++.+.++++++|||||||+|.++..++++ +.+|+|+|+|++|++.|++++...+.+ ++++.++ |+++++
T Consensus 4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~-d~~~l~---- 76 (231)
T d1vl5a_ 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQG-DAEQMP---- 76 (231)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEEC-CC-CCC----
T ss_pred HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhcccccccc-ccccccc-cccccc----
Confidence 457888999999999999999999999999986 889999999999999999999888875 8999999 999987
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCC-CCCCchhhhhhhcc-CCCCCCCHHHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYD-EHSLGPGFIKEYIF-PSGCLPSLRRVT 330 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~-~~~~~~~~i~~yi~-pgg~lp~~~~~~ 330 (381)
+++++||+|+|..+++|+ .++..+++++.++|||||++++..+..... .......++.+... +.....+..++.
T Consensus 77 --~~~~~fD~v~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (231)
T d1vl5a_ 77 --FTDERFHIVTCRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWL 152 (231)
T ss_dssp --SCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred --cccccccccccccccccc--CCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHH
Confidence 667999999999999999 468999999999999999988765432111 11111122222222 222345667775
Q ss_pred HHHHhcCCcEEEEEEec
Q 047022 331 SAMTSSSRLCVEHLENI 347 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~ 347 (381)
+.+. ++||++++++.+
T Consensus 153 ~~l~-~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 153 KMLE-EAGFELEELHCF 168 (231)
T ss_dssp HHHH-HHTCEEEEEEEE
T ss_pred HHHH-HCCCEEEEEEEe
Confidence 5555 589998877654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2.1e-23 Score=189.36 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=131.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
..+++.+.+.+.++||++|||||||+|.++..++++.+++|+|+|+|+.|++.|+++....|+.++++|..+ |+.++.
T Consensus 19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~-d~~~~~- 96 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN-DAAGYV- 96 (245)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CCTTCC-
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhh-HHhhcc-
Confidence 566778999999999999999999999999999987789999999999999999999999999989999999 998876
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhc--cCCCCCCCHH
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYI--FPSGCLPSLR 327 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi--~pgg~lp~~~ 327 (381)
.+++||+|+|.++++|++ ++..++++++++|||||+++++.+........ .-+.... .+.....+..
T Consensus 97 ------~~~~fD~v~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 165 (245)
T d1nkva_ 97 ------ANEKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQLPAT---EEIAQACGVSSTSDFLTLP 165 (245)
T ss_dssp ------CSSCEEEEEEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSS---HHHHHTTTCSCGGGSCCHH
T ss_pred ------ccCceeEEEEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEeccccCCCCh---HHHHHHhccCCCcccCCHH
Confidence 458999999999999994 57999999999999999998876543322111 1111111 1222345667
Q ss_pred HHHHHHHhcCCcEEEEEEec
Q 047022 328 RVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 328 ~~~~~l~~~~Gf~v~~~~~~ 347 (381)
++...+. ++||+++.....
T Consensus 166 ~~~~~~~-~aG~~~v~~~~~ 184 (245)
T d1nkva_ 166 GLVGAFD-DLGYDVVEMVLA 184 (245)
T ss_dssp HHHHHHH-TTTBCCCEEEEC
T ss_pred HHHHHHH-HcCCEEEEEEeC
Confidence 7766665 589998766544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=3.3e-23 Score=186.73 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=126.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+.+++.+.++||++|||||||+|.++..++++ +.+|+|+|+|+.|++.|++++...++. ++.+.++ |+.+++
T Consensus 3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~-d~~~~~-- 77 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQG-TAESLP-- 77 (234)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEEC-BTTBCC--
T ss_pred hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccc-ccccccc-cccccc--
Confidence 44567889999999999999999999999999986 789999999999999999999988874 7999999 999987
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCC-CCchhhhhhhccCCC-CCCCHHH
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEH-SLGPGFIKEYIFPSG-CLPSLRR 328 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~-~~~~~~i~~yi~pgg-~lp~~~~ 328 (381)
+++++||+|+|..+++|++ ++..+++++.++|||||+++++......... ....+.+.++..|.. ...+..+
T Consensus 78 ----~~~~~fD~v~~~~~l~~~~--d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T d1xxla_ 78 ----FPDDSFDIITCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSE 151 (234)
T ss_dssp ----SCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred ----ccccccceeeeeceeeccc--CHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHH
Confidence 6779999999999999994 5899999999999999998776432211110 011111222223322 2334555
Q ss_pred HHHHHHhcCCcEEEEEEec
Q 047022 329 VTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 329 ~~~~l~~~~Gf~v~~~~~~ 347 (381)
+... .+++||.+.+++.+
T Consensus 152 ~~~~-~~~~gf~~~~~~~~ 169 (234)
T d1xxla_ 152 WQAM-FSANQLAYQDIQKW 169 (234)
T ss_dssp HHHH-HHHTTEEEEEEEEE
T ss_pred HHHH-HHHCCCceeEEEEe
Confidence 6444 44589988776654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=2.3e-20 Score=165.93 Aligned_cols=120 Identities=20% Similarity=0.264 Sum_probs=103.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...+..++.+. ++++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|+++....+. ++.+..+ |+.+++
T Consensus 24 ~~~~~~~~~~~-l~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~-d~~~l~- 97 (226)
T d1ve3a1 24 IETLEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVG-DARKLS- 97 (226)
T ss_dssp HHHHHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEEC-CTTSCC-
T ss_pred HHHHHHHHHHh-cCCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccccc--ccccccc-cccccc-
Confidence 34445555553 467889999999999999999985 89999999999999999999888764 5788999 999987
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+++++||+|+|..+++|+++.++..+++++.++|||||++++..++
T Consensus 98 -----~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 98 -----FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp -----SCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----ccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 5679999999999999998778899999999999999998887654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=3.5e-20 Score=167.80 Aligned_cols=121 Identities=24% Similarity=0.367 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 169 q~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
+...+..++.....++..+|||||||+|.++..++++ +.+|+|+|+|+.|++.|++++...++ ++++.++ |+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~-d~~~l~ 101 (251)
T d1wzna1 26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQG-DVLEIA 101 (251)
T ss_dssp HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEES-CGGGCC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc-ceEEEEEeeccccccccccccccccc--cchheeh-hhhhcc
Confidence 3455667778888888899999999999999999985 88999999999999999999988775 5999999 999998
Q ss_pred cCCccccCCCcccEEEEc-hhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFIC-GMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~-~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|+|. .+++|+..++...++++++++|||||++++..++
T Consensus 102 -------~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 102 -------FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp -------CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 34789999996 5788887677889999999999999998887654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.2e-20 Score=168.51 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=114.7
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
...++.+|||||||+|.++..++++.+.+|+|+|+|++|++.|++++...+.. +++|.++ |+++++ ++.++|
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~-d~~~~~------~~~~~f 128 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCC-GLQDFT------PEPDSY 128 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEEC-CGGGCC------CCSSCE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc-ccccccc-cccccc------cccccc
Confidence 44577899999999999999987665679999999999999999998776653 7899999 999987 456899
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLC 340 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~ 340 (381)
|+|++..+++|+++++...++++++++|||||.++++.+......... . .......+..++.+.+ +++||+
T Consensus 129 D~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~------~--~~~~~~~~~~~~~~l~-~~aGf~ 199 (222)
T d2ex4a1 129 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD------D--VDSSVCRDLDVVRRII-CSAGLS 199 (222)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEE------T--TTTEEEEBHHHHHHHH-HHTTCC
T ss_pred cccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccc------c--CCceeeCCHHHHHHHH-HHcCCE
Confidence 999999999999877778999999999999999888754322111000 0 0111234566665444 458999
Q ss_pred EEEEEe
Q 047022 341 VEHLEN 346 (381)
Q Consensus 341 v~~~~~ 346 (381)
+++.+.
T Consensus 200 ii~~~~ 205 (222)
T d2ex4a1 200 LLAEER 205 (222)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987664
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=6.6e-22 Score=186.99 Aligned_cols=243 Identities=13% Similarity=0.091 Sum_probs=161.2
Q ss_pred eEEEEeChHHHHHhhhcCCcchhHhhhcCceEeccchhhHHHHHHHHHhcCCCCccccccccCCCCCCcccccccchhhh
Q 047022 33 TILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLNLFPIVIANQDLDSSTSKLKKSWGPSQNTSWLKPKKTKK 112 (381)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (381)
++|++++|....+++....+++||+||+|.+++.+ ++..++.+...... ................ ...
T Consensus 1 ~~lrl~sP~~~~~~~~~~~l~~~e~~~d~~~ei~~-------~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~ 68 (328)
T d1nw3a_ 1 LELRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIE-------TIRWVCEEIPDLKL--AMENYVLIDYDTKSFE---SMQ 68 (328)
T ss_dssp CEEEECCTTSCCCEEEESSCCEEETTEEHHHHHHH-------HHHHHHHHCHHHHH--HHSSSCCSCCCTTCHH---HHH
T ss_pred CeEEEeCCccccceeecCCccchhhcCCcHHHHHH-------HHHHHHHhchhhhH--HHHHHHHHhcCCccHH---HHH
Confidence 47999999999999999999999999999877644 33333222110000 0000000000000000 000
Q ss_pred HHhhhh-cccCChhHHHHhhhhhcCCCcccccccccCCC--Cceeec---------ccCCCCCCHHHHHHHHHHHHHHHc
Q 047022 113 YFFRHI-SRKNTLTQARRHVSRLYDPSNELFFFLFLDKS--MTYSCA---------IFKSKHEDLEVGQIRKVSVLIEKV 180 (381)
Q Consensus 113 ~~~~~~-~~~~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~--~~ys~~---------~~~~~~~~l~~aq~~~~~~l~~~l 180 (381)
..+... ..-+...+..+++..|++..++. +..+++.- +.|+++ |......++.+++...+..+++++
T Consensus 69 ~~~~~~n~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~~~~e~~~~~~~~~~~~~ 147 (328)
T d1nw3a_ 69 RLCDKYNRAIDSIHQLWKGTTQPMKLNTRP-STGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEI 147 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCSSCCC-CHHHHHHHHHHHHHHHCSCGGGGGCSCSSSTTCCCCCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHhcccc-cHHHHHHHHhhhhhhccCCHHHhccccCCCCCchhhhHHHHHHHHHHHc
Confidence 111000 00123345667888899988887 77666553 334333 233345567777888899999999
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHc-------CC-CCCeEEEEecCccccCcCC
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEA-------GL-QDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~-------gl-~~~i~~~~~~d~~~l~~~~ 251 (381)
.++++++|||||||+|.++..+|+..++ +++|+|+|+.+++.|++..+.. |+ ..++++..+ |+.+.+
T Consensus 148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g-d~~~~~--- 223 (328)
T d1nw3a_ 148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG-DFLSEE--- 223 (328)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC-CTTSHH---
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC-cccccc---
Confidence 9999999999999999999999987555 7999999999999998876542 22 247999999 998775
Q ss_pred ccccCCCc--ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 252 MTELFLGN--FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~~--fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+.+.. .|+|++. .+.|. .++...+.++.+.|||||++++..
T Consensus 224 ---~~~~~~~advi~~~-~~~f~--~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 224 ---WRERIANTSVIFVN-NFAFG--PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp ---HHHHHHHCSEEEEC-CTTTC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ---cccccCcceEEEEc-ceecc--hHHHHHHHHHHHhCCCCcEEEEec
Confidence 23333 4666664 44455 467899999999999999988754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.81 E-value=3.7e-19 Score=161.93 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=128.7
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
+.+++.+.+.+..+|||||||+|.++..++++ ++.+++++|+ +++++.+++++...++.+++++..+ |+.+..
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~-D~~~~~---- 143 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEG-DFFEPL---- 143 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEEC-CTTSCC----
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccc-cchhhc----
Confidence 46778888888899999999999999999988 6789999998 6789999999999999999999999 986533
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC-chhh--hhhhccCCCCCCCHHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL-GPGF--IKEYIFPSGCLPSLRRV 329 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~-~~~~--i~~yi~pgg~lp~~~~~ 329 (381)
..+||+|++..+++|+++++...++++++++|||||+++|............ .... +.-+...+|..++.+++
T Consensus 144 ----~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~ 219 (253)
T d1tw3a2 144 ----PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKW 219 (253)
T ss_dssp ----SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHH
T ss_pred ----ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHH
Confidence 2679999999999999887788999999999999999887643221111111 0111 12234457778889888
Q ss_pred HHHHHhcCCcEEEEEEecc
Q 047022 330 TSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 330 ~~~l~~~~Gf~v~~~~~~~ 348 (381)
.+.+ +++||+++++..+.
T Consensus 220 ~~ll-~~AGf~~~~v~~~~ 237 (253)
T d1tw3a2 220 DGLA-ASAGLVVEEVRQLP 237 (253)
T ss_dssp HHHH-HHTTEEEEEEEEEE
T ss_pred HHHH-HHCCCeEEEEEECC
Confidence 5554 46999998887654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.80 E-value=6.6e-19 Score=154.16 Aligned_cols=113 Identities=17% Similarity=0.258 Sum_probs=98.7
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
++.+...++.+|||||||+|..+..++++ +.+|+|+|+|+.+++.++++....++. ++++... |...++ .
T Consensus 23 ~~~~~~~~~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~-d~~~~~-------~ 92 (198)
T d2i6ga1 23 LAAAKVVAPGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLV-DLNTLT-------F 92 (198)
T ss_dssp HHHHTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEEC-CTTTCC-------C
T ss_pred HHHcccCCCCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhcccc-chhhhhe-eccccc-------c
Confidence 33333333459999999999999999996 899999999999999999999988885 7999999 998877 4
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+++||+|++..+++|+++.+...+++++.++|+|||++++...
T Consensus 93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 93 DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5889999999999999888889999999999999999777654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.79 E-value=2.3e-19 Score=163.41 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc
Q 047022 165 LEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV 244 (381)
Q Consensus 165 l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~ 244 (381)
+..+.......+++.+...++.+|||+|||+|.++..++.+...+|+++|+|+.|++.|+++.... .++++..+ |+
T Consensus 74 ~~~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~-d~ 149 (254)
T d1xtpa_ 74 VHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILA-SM 149 (254)
T ss_dssp GHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEES-CG
T ss_pred cchhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEc-cc
Confidence 445555666788888888888999999999999999988765679999999999999999886532 36899999 99
Q ss_pred cccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCC
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLP 324 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp 324 (381)
.+++ ++.++||+|++.++++|+++++...++++++++|||||.++|..+....... .... ..+....
T Consensus 150 ~~~~------~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~-----~~d~--~d~~~~r 216 (254)
T d1xtpa_ 150 ETAT------LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF-----LVDK--EDSSLTR 216 (254)
T ss_dssp GGCC------CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE-----EEET--TTTEEEB
T ss_pred cccc------cCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc-----eecc--cCCceeC
Confidence 9887 4568999999999999998877889999999999999998886543221110 0000 0111223
Q ss_pred CHHHHHHHHHhcCCcEEEEEEe
Q 047022 325 SLRRVTSAMTSSSRLCVEHLEN 346 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~~ 346 (381)
+..++. .+.+++||+++..+.
T Consensus 217 s~~~~~-~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 217 SDIHYK-RLFNESGVRVVKEAF 237 (254)
T ss_dssp CHHHHH-HHHHHHTCCEEEEEE
T ss_pred CHHHHH-HHHHHcCCEEEEEEe
Confidence 556664 444568999877543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.79 E-value=7.6e-19 Score=156.82 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=97.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
++|+.+|||+|||+|..+..+++. ++++|+|+|+|+.|++.|+++++..+...++++... |+.+.+ ..
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~-d~~~~~--------~~ 107 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN-DIRHVE--------IK 107 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS-CTTTCC--------CC
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccc-hhhccc--------cc
Confidence 468899999999999999999975 578999999999999999999988777777888888 877665 36
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+|+|++..+++|++.+++..++++++++|||||.+++..+.
T Consensus 108 ~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 108 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp SEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 799999999999998889999999999999999998876443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.79 E-value=5.6e-19 Score=157.82 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=109.6
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++. .+++++..+ |+.+++ .+++||+|
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~-~~~~~~-------~~~~fD~I 85 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRL-----KDGITYIHS-RFEDAQ-------LPRRYDNI 85 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHS-----CSCEEEEES-CGGGCC-------CSSCEEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhccc-----ccccccccc-cccccc-------cccccccc
Confidence 4668999999999999999885 789999999999999998774 247999999 998877 35889999
Q ss_pred EEchhhHhhChhcHHHHHHHHH-hccccCceEEEEcCCCCCCC---------CCCchhhhhh-hccCCCCCCCHHHHHHH
Q 047022 264 FICGMIEAVGHDYMEELFSCCE-SLLAENGLSCSTVPDQCYDE---------HSLGPGFIKE-YIFPSGCLPSLRRVTSA 332 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~-~~LkpgG~~~i~~~~~~~~~---------~~~~~~~i~~-yi~pgg~lp~~~~~~~~ 332 (381)
++.++++|+ +++..+++++. ++|||||.+++++|+..... ......+... ...+.....+..++. .
T Consensus 86 ~~~~vleh~--~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~-~ 162 (225)
T d2p7ia1 86 VLTHVLEHI--DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE-R 162 (225)
T ss_dssp EEESCGGGC--SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHH-H
T ss_pred cccceeEec--CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHH-H
Confidence 999999999 56899999998 79999999999988743210 0000011111 111222344566664 4
Q ss_pred HHhcCCcEEEEEEec
Q 047022 333 MTSSSRLCVEHLENI 347 (381)
Q Consensus 333 l~~~~Gf~v~~~~~~ 347 (381)
+.+++||++++.+.+
T Consensus 163 ~l~~~Gf~i~~~~~~ 177 (225)
T d2p7ia1 163 DASRAGLQVTYRSGI 177 (225)
T ss_dssp HHHHTTCEEEEEEEE
T ss_pred HHHHCCCEEEEEEEE
Confidence 445699999887653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.79 E-value=3.7e-19 Score=154.53 Aligned_cols=121 Identities=17% Similarity=0.115 Sum_probs=103.2
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC-----------CCCeEEEEe
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL-----------QDTSDYIFV 241 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl-----------~~~i~~~~~ 241 (381)
+..++..+.++|+.+|||+|||+|..+.++|++ |.+|+|+|+|+.|++.|+++.+..+. ...+++..+
T Consensus 9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 456688888999999999999999999999996 99999999999999999999865432 135688888
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+.++++ .....||+|++..+++|+++++...+++++.++|||||.+++....
T Consensus 88 -d~~~l~~-----~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 88 -DFFALTA-----RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp -CCSSSTH-----HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred -ccccccc-----ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 8888762 2347899999999999999888899999999999999997765543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.78 E-value=1.3e-18 Score=158.08 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=97.4
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+++.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++....+...++.+.++ |....+. ...++||
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~-D~~~~~~-----~~~~~fD 95 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ-DSYGRHM-----DLGKEFD 95 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEES-CTTTSCC-----CCSSCEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEc-chhhhcc-----cccccce
Confidence 578899999999999999999886446899999999999999999988777778999999 9866551 1457899
Q ss_pred EEEEchhhHhhC--hhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVG--HDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~--~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+|+|..+++|+. .++...+++++.++|||||++++++++
T Consensus 96 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 96 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 999999999984 346788999999999999999888765
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=3.4e-19 Score=156.88 Aligned_cols=141 Identities=16% Similarity=0.085 Sum_probs=106.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.|+.+|||||||+|.++..++ +++|+|+|+.|++.|+++ ++++.++ |.++++ +++++||+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~-d~~~l~------~~~~~fD~ 94 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKG-TAENLP------LKDESFDF 94 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEEC-BTTBCC------SCTTCEEE
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------ccccccc-cccccc------cccccccc
Confidence 356799999999999887763 458999999999999874 5899999 999987 56789999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC-CchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS-LGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCV 341 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~-~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v 341 (381)
|+|..+++|++ ++..+++++.++|+|||.+++..++....... ............+...++..++.+.+. ++||++
T Consensus 95 I~~~~~l~h~~--d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~-~~Gf~~ 171 (208)
T d1vlma_ 95 ALMVTTICFVD--DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMR-KAGFEE 171 (208)
T ss_dssp EEEESCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHH-HTTCEE
T ss_pred ccccccccccc--ccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHH-HcCCeE
Confidence 99999999994 68999999999999999999988764321100 001111111223445678888865555 589998
Q ss_pred EEEEe
Q 047022 342 EHLEN 346 (381)
Q Consensus 342 ~~~~~ 346 (381)
+++..
T Consensus 172 i~v~~ 176 (208)
T d1vlma_ 172 FKVVQ 176 (208)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.77 E-value=3.9e-19 Score=160.75 Aligned_cols=117 Identities=18% Similarity=0.236 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
..+..++.... .++.+|||||||+|.++..++++ +.+|+|+|+|++|++.|+++....++ ++++.++ |+.+++
T Consensus 25 ~~~~~~~~~~~-~~~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~-d~~~~~-- 97 (246)
T d1y8ca_ 25 DFIIEKCVENN-LVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQ-DISNLN-- 97 (246)
T ss_dssp HHHHHHHHTTT-CCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECC-CGGGCC--
T ss_pred HHHHHHHHHhC-CCCCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccccCc--cceeecc-chhhhc--
Confidence 33444444443 34579999999999999999985 88999999999999999999988775 5999999 999887
Q ss_pred CccccCCCcccEEEEc-hhhHhhC-hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 251 NMTELFLGNFSTVFIC-GMIEAVG-HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~-~~l~~~~-~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|+|. .+++|+. .+++..++++++++|||||.+++.+.
T Consensus 98 -----~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 98 -----INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp -----CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -----ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 34789999986 6788874 45788899999999999999887653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1.7e-18 Score=155.62 Aligned_cols=113 Identities=22% Similarity=0.299 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
.+.+..++... ++++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++. . ..+..+ |+++++
T Consensus 29 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~----~---~~~~~~-~~~~l~- 97 (246)
T d2avna1 29 HRLIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKG----V---KNVVEA-KAEDLP- 97 (246)
T ss_dssp HHHHHHHHHHH-CCSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHT----C---SCEEEC-CTTSCC-
T ss_pred HHHHHHHHHHh-cCCCCEEEEECCCCchhccccccc-ceEEEEeeccccccccccccc----c---cccccc-cccccc-
Confidence 34444555544 346789999999999999999985 899999999999999999862 2 246678 998887
Q ss_pred CCccccCCCcccEEEEc-hhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 250 TNMTELFLGNFSTVFIC-GMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~-~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+++++||+|+|. .+++|+ .++..+++++.++|||||.+++++++
T Consensus 98 -----~~~~~fD~ii~~~~~~~~~--~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 98 -----FPSGAFEAVLALGDVLSYV--ENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp -----SCTTCEEEEEECSSHHHHC--SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred -----cccccccceeeecchhhhh--hhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 677999999986 589999 45789999999999999999998865
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.75 E-value=5.9e-18 Score=154.14 Aligned_cols=164 Identities=14% Similarity=0.090 Sum_probs=125.5
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+++.+++.+..+|||||||+|.++..++++ ++.+++++|+ +++++.+++++...++.+++++..+ |..+..
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~-d~~~~~---- 144 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEG-DFFKPL---- 144 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC-CTTSCC----
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeee-eccccc----
Confidence 35677777788889999999999999999998 6889999998 7889999999999999999999999 876532
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCC-CCCCC-chhh--hhhhccCCCCCCCHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCY-DEHSL-GPGF--IKEYIFPSGCLPSLRR 328 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~-~~~~~-~~~~--i~~yi~pgg~lp~~~~ 328 (381)
..+||+|++..+++|+++++...++++++++|||||+++|....... ..... .... +.-....+|...+..+
T Consensus 145 ----p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e 220 (256)
T d1qzza2 145 ----PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDE 220 (256)
T ss_dssp ----SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHH
T ss_pred ----cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHH
Confidence 25699999999999999888889999999999999998776432110 10000 0111 1111234667778888
Q ss_pred HHHHHHhcCCcEEEEEEecc
Q 047022 329 VTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 329 ~~~~l~~~~Gf~v~~~~~~~ 348 (381)
+. .+.+++||+++++...+
T Consensus 221 ~~-~ll~~AGf~~~~~~~~~ 239 (256)
T d1qzza2 221 VV-DLAGSAGLALASERTSG 239 (256)
T ss_dssp HH-HHHHTTTEEEEEEEEEC
T ss_pred HH-HHHHHCCCceeEEEEeC
Confidence 85 45556999998887654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.75 E-value=2.1e-18 Score=159.23 Aligned_cols=116 Identities=21% Similarity=0.329 Sum_probs=98.8
Q ss_pred HHHHHHHc-CCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 173 VSVLIEKV-KLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 173 ~~~l~~~l-~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+..+++.+ .+.++.+|||||||+|.++..+++. .+.+|+|+|+|+.+++.|+++....+. +++|..+ |+.+++
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~-d~~~~~- 90 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEG-DATEIE- 90 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEES-CTTTCC-
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccc-cccccc-
Confidence 44555544 4567789999999999999999886 357999999999999999999887654 6999999 998877
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|+|..+++|++ ++..+++++.++|||||.+++..|+
T Consensus 91 ------~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 91 ------LNDKYDIAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp ------CSSCEEEEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ------ccCCceEEEEehhhhcCC--CHHHHHHHHHHHcCcCcEEEEEECC
Confidence 346899999999999994 6899999999999999998887764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.1e-19 Score=162.08 Aligned_cols=201 Identities=13% Similarity=0.086 Sum_probs=124.8
Q ss_pred cccccccccCCCCceeecccCCCCCCHHHHHH-H-HHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEc
Q 047022 139 NELFFFLFLDKSMTYSCAIFKSKHEDLEVGQI-R-KVSVLIEKVK--LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGIT 214 (381)
Q Consensus 139 ~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~-~-~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD 214 (381)
.++ |+.++++. .|...||..........+. + ....+.+.+. ..++.+|||||||+|.++..++.....+|+|+|
T Consensus 4 ~~~-y~~~f~~~-~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD 81 (257)
T d2a14a1 4 GDE-YQKHFLPR-DYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSD 81 (257)
T ss_dssp HHH-HHHHCCHH-HHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEE
T ss_pred cch-HHhhcChH-HHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEec
Confidence 345 66655543 4555556554443333322 2 2233333332 346789999999999988877765344799999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC----------------------------e-EEEEecCccccCcCCccccCCCcccEEEE
Q 047022 215 LSELQLKYAEIKVKEAGLQDT----------------------------S-DYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 215 is~~~~~~a~~~~~~~gl~~~----------------------------i-~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+|+.|++.|++++........ + ..... +...... +..+..++||+|++
T Consensus 82 ~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~fD~i~~ 158 (257)
T d2a14a1 82 FTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKC-DVHLGNP--LAPAVLPLADCVLT 158 (257)
T ss_dssp SCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEEC-CTTSSST--TTTCCCCCEEEEEE
T ss_pred CCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhccccc-ccccccc--cccccCCcccEEee
Confidence 999999999999876543210 1 11111 1111100 01245688999999
Q ss_pred chhhHhhCh--hcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 047022 266 CGMIEAVGH--DYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 266 ~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
..+++|++. +++..+++++.++|||||.++++.+..... +.. ....++ ....+.+++.+.+. ++||++++
T Consensus 159 ~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~-~~~-----~~~~~~-~~~~~~~~~~~~l~-~aGf~v~~ 230 (257)
T d2a14a1 159 LLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-YMV-----GKREFS-CVALEKGEVEQAVL-DAGFDIEQ 230 (257)
T ss_dssp ESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-EEE-----TTEEEE-CCCCCHHHHHHHHH-HTTEEEEE
T ss_pred hhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccc-cee-----cccccc-ccCCCHHHHHHHHH-HCCCEEEE
Confidence 999999963 367889999999999999988876542210 000 001111 23446777766655 59999999
Q ss_pred EEecchhHH
Q 047022 344 LENIETHYY 352 (381)
Q Consensus 344 ~~~~~~~y~ 352 (381)
++....+|.
T Consensus 231 ~~~~~~~~~ 239 (257)
T d2a14a1 231 LLHSPQSYS 239 (257)
T ss_dssp EEEECCCCC
T ss_pred EEEeccccc
Confidence 887665553
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.73 E-value=8.9e-18 Score=145.57 Aligned_cols=112 Identities=14% Similarity=0.215 Sum_probs=99.6
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..++.++.+.++++|||+|||+|.+++.+++. +.+|+++|+++++++.|+++++..++.+++++..+ |+.+..
T Consensus 23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g-da~~~~----- 95 (186)
T d1l3ia_ 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-DAPEAL----- 95 (186)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-CHHHHH-----
T ss_pred HHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC-chhhcc-----
Confidence 47788899999999999999999999999985 77999999999999999999999999889999999 988765
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.....||.|++....++ ...+++.+.+.|||||++++..
T Consensus 96 -~~~~~~D~v~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 96 -CKIPDIDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp -TTSCCEEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEE
T ss_pred -cccCCcCEEEEeCcccc-----chHHHHHHHHHhCcCCEEEEEe
Confidence 34578999999876544 4788999999999999988764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=2.8e-17 Score=148.91 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=112.2
Q ss_pred cccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHH
Q 047022 139 NELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSEL 218 (381)
Q Consensus 139 ~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~ 218 (381)
+.- +...+++.|.|.+|..++ .+-.++.+ ... .++|++|||+|||+|.+++.+++ .|++|+|+|+|+.
T Consensus 86 ~~~-~~i~i~pg~aFGTG~H~T--------T~l~l~~l-~~~-~~~g~~VLDiGcGsG~l~i~aa~-~g~~V~gvDis~~ 153 (254)
T d2nxca1 86 GAE-IPLVIEPGMAFGTGHHET--------TRLALKAL-ARH-LRPGDKVLDLGTGSGVLAIAAEK-LGGKALGVDIDPM 153 (254)
T ss_dssp SSS-EEEECCCC-----CCSHH--------HHHHHHHH-HHH-CCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCGG
T ss_pred Ccc-eEEEEccccccCccccch--------hhHHHHHH-Hhh-cCccCEEEEcccchhHHHHHHHh-cCCEEEEEECChH
Confidence 345 677888988886664432 12222233 222 36899999999999999998887 5899999999999
Q ss_pred HHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 219 QLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 219 ~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+++.|+++++.+++. +++..+ |..+.. +.++||+|+++...+. ...+++.+.++|||||+++++.
T Consensus 154 av~~A~~na~~n~~~--~~~~~~-d~~~~~-------~~~~fD~V~ani~~~~-----l~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 154 VLPQAEANAKRNGVR--PRFLEG-SLEAAL-------PFGPFDLLVANLYAEL-----HAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp GHHHHHHHHHHTTCC--CEEEES-CHHHHG-------GGCCEEEEEEECCHHH-----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCc--eeEEec-cccccc-------cccccchhhhcccccc-----HHHHHHHHHHhcCCCcEEEEEe
Confidence 999999999999885 678888 876543 4578999999855444 4778899999999999988863
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEe
Q 047022 299 PDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLEN 346 (381)
Q Consensus 299 ~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~ 346 (381)
.- . ....++.+.+. +.||.+++...
T Consensus 219 il-------------~---------~~~~~v~~~~~-~~Gf~~~~~~~ 243 (254)
T d2nxca1 219 IL-------------K---------DRAPLVREAMA-GAGFRPLEEAA 243 (254)
T ss_dssp EE-------------G---------GGHHHHHHHHH-HTTCEEEEEEE
T ss_pred cc-------------h---------hhHHHHHHHHH-HCCCEEEEEEE
Confidence 10 0 11334444554 48999877654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.8e-17 Score=144.44 Aligned_cols=120 Identities=17% Similarity=0.075 Sum_probs=100.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC----------------CCCCeE
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG----------------LQDTSD 237 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~g----------------l~~~i~ 237 (381)
+.+.+.+.+.++.+|||+|||+|..+.++|++ |.+|+|+|+|+.+++.|+++..... ...+++
T Consensus 35 ~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 113 (229)
T d2bzga1 35 KHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS 113 (229)
T ss_dssp HHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence 34445567788999999999999999999995 9999999999999999988764321 124789
Q ss_pred EEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 238 YIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 238 ~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+.++ |+.++++ ...+.||+|+...+++|+++++...+++++.++|||||++++....
T Consensus 114 ~~~~-d~~~l~~-----~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~ 170 (229)
T d2bzga1 114 LYCC-SIFDLPR-----TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS 170 (229)
T ss_dssp EEES-CGGGGGG-----SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEc-chhhccc-----cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence 9999 9988763 3568999999999999999889999999999999999997666543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.67 E-value=1.2e-16 Score=142.82 Aligned_cols=148 Identities=12% Similarity=0.061 Sum_probs=108.9
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
++.+.++||++|||+|||+|..+.++++. ++..|+|+|+|+.|++.+++++... +++..+.. |..... ..
T Consensus 67 l~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~-d~~~~~-----~~ 137 (230)
T d1g8sa_ 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILG-DANKPQ-----EY 137 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEEC-CTTCGG-----GG
T ss_pred HHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEE-eeccCc-----cc
Confidence 35677899999999999999999999987 5679999999999999999886543 47888888 877654 13
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHh
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTS 335 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~ 335 (381)
....+|++++...+.|. .+...+++++.+.|||||.++++........... . . ....+..+.+.
T Consensus 138 ~~~~~~v~~i~~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~---~-~---------~~~~e~~~~L~- 201 (230)
T d1g8sa_ 138 ANIVEKVDVIYEDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD---P-K---------EIFKEQKEILE- 201 (230)
T ss_dssp TTTCCCEEEEEECCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC---H-H---------HHHHHHHHHHH-
T ss_pred ccccceeEEeeccccch--HHHHHHHHHHHHhcccCceEEEEeeccccCCCCC---H-H---------HHHHHHHHHHH-
Confidence 45678887777777776 5688999999999999999877653221110000 0 0 01234445555
Q ss_pred cCCcEEEEEEecch
Q 047022 336 SSRLCVEHLENIET 349 (381)
Q Consensus 336 ~~Gf~v~~~~~~~~ 349 (381)
++||++++..++.+
T Consensus 202 ~aGF~ive~idL~p 215 (230)
T d1g8sa_ 202 AGGFKIVDEVDIEP 215 (230)
T ss_dssp HHTEEEEEEEECTT
T ss_pred HcCCEEEEEecCCC
Confidence 48999998887753
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.65 E-value=2e-16 Score=142.71 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=93.0
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...++..++++||++|||+|||+|.++..+++. ++.+|+++|.++++++.|+++++..+..+++++..+ |+.+..
T Consensus 74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~-Di~~~~-- 150 (250)
T d1yb2a1 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS-DIADFI-- 150 (250)
T ss_dssp -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS-CTTTCC--
T ss_pred HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEe-eeeccc--
Confidence 346889999999999999999999999999986 567999999999999999999998777779999999 987764
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.++.||+|+.. ++ ++..+++++.++|||||++++..|+
T Consensus 151 -----~~~~fD~V~ld-----~p--~p~~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 151 -----SDQMYDAVIAD-----IP--DPWNHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp -----CSCCEEEEEEC-----CS--CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred -----ccceeeeeeec-----CC--chHHHHHHHHHhcCCCceEEEEeCC
Confidence 45789999974 53 4578899999999999998886653
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=3.6e-16 Score=136.11 Aligned_cols=115 Identities=18% Similarity=0.310 Sum_probs=97.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD-TSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~-~i~~~~~~d~~~l~~~~l~ 253 (381)
.+++.+...++.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.+++++..+++.. ++++..+ |..+..
T Consensus 43 lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~-d~~~~~----- 115 (194)
T d1dusa_ 43 ILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS-DLYENV----- 115 (194)
T ss_dssp HHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC-STTTTC-----
T ss_pred HHHHhCCcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCccceEEEEEc-chhhhh-----
Confidence 5677888889999999999999999999885 7899999999999999999999888864 6899999 886633
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.+++||+|+++.++++. .+....+++++.++|||||.+++...
T Consensus 116 --~~~~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 116 --KDRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp --TTSCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --ccCCceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 45899999998877654 33467899999999999999877553
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=4.5e-16 Score=143.09 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=105.9
Q ss_pred HHHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHh-----c--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEec
Q 047022 171 RKVSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQ-----T--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242 (381)
Q Consensus 171 ~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~-----~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~ 242 (381)
+.+..++..+. .++..+|||||||+|.++..+++. . +..++|+|+|+.|++.+++++.......++.+....
T Consensus 26 ~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 105 (280)
T d1jqea_ 26 KKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHK 105 (280)
T ss_dssp HTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEEC
T ss_pred HHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchh
Confidence 33444444443 345568999999999998887654 1 347899999999999999998654433355543320
Q ss_pred -CccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhh--ccC
Q 047022 243 -TVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEY--IFP 319 (381)
Q Consensus 243 -d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~y--i~p 319 (381)
++.+..........+++||+|++..+++|+ .++..+++++.++|+|||.++++.++.... ......++ .++
T Consensus 106 ~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~--~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~----~~~l~~~~~~~~~ 179 (280)
T d1jqea_ 106 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSG----WDKLWKKYGSRFP 179 (280)
T ss_dssp SCHHHHHHHHTTSSSCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEECTTSH----HHHHHHHHGGGSC
T ss_pred hhhhhhcchhcccCCCCceeEEEEccceecC--CCHHHHHHHHHhhCCCCCEEEEEEecCcch----HHHHHHHHHHhcC
Confidence 332210000001356899999999999999 468999999999999999988887654321 11112221 112
Q ss_pred C---CCCCCHHHHHHHHHhcCCcEEEE
Q 047022 320 S---GCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 320 g---g~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
. ....+..++.+.+ ++.||..+.
T Consensus 180 ~~~~~~~~~~~~~~~~L-~~~G~~~~~ 205 (280)
T d1jqea_ 180 QDDLCQYITSDDLTQML-DNLGLKYEC 205 (280)
T ss_dssp CCTTSCCCCHHHHHHHH-HHHTCCEEE
T ss_pred CCcccccCCHHHHHHHH-HHCCCceEE
Confidence 1 2245566665544 457997543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=4.9e-16 Score=137.29 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..+..+++.+.+++|++|||||||+|..+..+++. ...+|+++|+++++++.|++++...++. ++.+..+ |..+..
T Consensus 62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~-d~~~~~ 139 (213)
T d1dl5a1 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCG-DGYYGV 139 (213)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEES-CGGGCC
T ss_pred hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccC-chHHcc
Confidence 44557899999999999999999999999999987 3579999999999999999999988875 8889999 987765
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...++||+|++..+++++++ .+.+.|||||++++.+.
T Consensus 140 ------~~~~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv~ 176 (213)
T d1dl5a1 140 ------PEFSPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVPIN 176 (213)
T ss_dssp ------GGGCCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEEBC
T ss_pred ------ccccchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEEEC
Confidence 24578999999999998853 35678999999887653
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=6.9e-16 Score=140.03 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc--CCCCCeEEEEecCccc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEA--GLQDTSDYIFVITVNC 246 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~--gl~~~i~~~~~~d~~~ 246 (381)
.....++..++++||++|||+|||+|.++..+|+. ++.+|+++|+++++++.|++++... +..+++++..+ |..+
T Consensus 83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~-d~~~ 161 (264)
T d1i9ga_ 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS-DLAD 161 (264)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS-CGGG
T ss_pred HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec-cccc
Confidence 34568899999999999999999999999999987 5679999999999999999998764 44578999999 9987
Q ss_pred cCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 247 LKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 247 l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+ +++++||.|+. +++ ++..+++++.++|||||++++..|+
T Consensus 162 ~~------~~~~~fDaV~l-----dlp--~P~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 162 SE------LPDGSVDRAVL-----DML--APWEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp CC------CCTTCEEEEEE-----ESS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred cc------ccCCCcceEEE-----ecC--CHHHHHHHHHhccCCCCEEEEEeCc
Confidence 76 56789999987 464 4688999999999999998887654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=4.5e-16 Score=142.41 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=89.1
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+.+.+ ..++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.|+++. .++++.++ |+.+++
T Consensus 75 ~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~-d~~~l~---- 142 (268)
T d1p91a_ 75 AQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVA-SSHRLP---- 142 (268)
T ss_dssp HHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEEC-CTTSCS----
T ss_pred HHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceee-ehhhcc----
Confidence 3444444 456779999999999999999987 5789999999999999998763 47999999 999998
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
+.+++||+|++..+++|+ +++.|+|||||.+++++|+..
T Consensus 143 --~~~~sfD~v~~~~~~~~~---------~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 143 --FSDTSMDAIIRIYAPCKA---------EELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp --BCTTCEEEEEEESCCCCH---------HHHHHHEEEEEEEEEEEECTT
T ss_pred --CCCCCEEEEeecCCHHHH---------HHHHHHhCCCcEEEEEeeCCc
Confidence 678999999998776653 568999999999999988754
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=1.2e-15 Score=139.06 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.....++..++++||++|||+|||+|.++..+|+. ++++|+++|+++++++.|+++++..++.+++.+... |.....
T Consensus 90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~-d~~~~~ 168 (266)
T d1o54a_ 90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR-DISEGF 168 (266)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC-CGGGCC
T ss_pred HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEec-cccccc
Confidence 34557899999999999999999999999999987 468999999999999999999999999888999988 875433
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
....||.|+. +++ ++..+++++.++|||||++++..|.
T Consensus 169 -------~~~~~D~V~~-----d~p--~p~~~l~~~~~~LKpGG~lv~~~P~ 206 (266)
T d1o54a_ 169 -------DEKDVDALFL-----DVP--DPWNYIDKCWEALKGGGRFATVCPT 206 (266)
T ss_dssp -------SCCSEEEEEE-----CCS--CGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred -------cccceeeeEe-----cCC--CHHHHHHHHHhhcCCCCEEEEEeCc
Confidence 4578999876 364 5788999999999999998887653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.1e-15 Score=141.30 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=90.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC---CeEEEEecCccccCcCC
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD---TSDYIFVITVNCLKPTN 251 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~---~i~~~~~~d~~~l~~~~ 251 (381)
.+++.+..+++.+|||+|||+|.++..++++ |.+|+|+|+|++|++.|+++....+... +..+... ++..++..
T Consensus 47 ~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 123 (292)
T d1xvaa_ 47 WLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA-NWLTLDKD- 123 (292)
T ss_dssp HHHHHHHHTTCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC-CGGGHHHH-
T ss_pred HHHHHhhhcCCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeec-cccccccc-
Confidence 3444455556789999999999999999996 8999999999999999999987765431 2344445 55332100
Q ss_pred ccccCCCcccEEEEch-hhHhhCh-----hcHHHHHHHHHhccccCceEEEEcC
Q 047022 252 MTELFLGNFSTVFICG-MIEAVGH-----DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~-~l~~~~~-----~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
....++||.|+|.. +++|+++ ++...+++++.++|||||+++++..
T Consensus 124 --~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 124 --VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp --SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 01347899999864 8999864 3577899999999999999988764
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.60 E-value=2.3e-15 Score=132.42 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=85.5
Q ss_pred HcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 179 KVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
.+.++||++|||+|||+|..+.++++. +..+|+|+|+|+.|++.+++++... +++.+... |....... ....
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~-d~~~~~~~---~~~~ 123 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLF-DASKPWKY---SGIV 123 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECS-CTTCGGGT---TTTC
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEe-eccCcccc---cccc
Confidence 578899999999999999999999987 4569999999999999999998775 37999999 88775411 0112
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..+|+|++ .+.|. .+...+++++.++|||||.+++..
T Consensus 124 ~~vd~v~~--~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 124 EKVDLIYQ--DIAQK--NQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CCEEEEEE--CCCST--THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEe--cccCh--hhHHHHHHHHHHHhccCCeEEEEE
Confidence 33444443 34444 457889999999999999987764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.7e-15 Score=138.20 Aligned_cols=157 Identities=15% Similarity=-0.003 Sum_probs=103.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCC--------------------------
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT-------------------------- 235 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~-------------------------- 235 (381)
...|.+|||||||+|.++...+.....+|+|+|+|+.|++.+++++......-.
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 346789999999999887655554466999999999999999987754321100
Q ss_pred ---eEEEEecCccccCcCCccccCCCcccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCch
Q 047022 236 ---SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGP 310 (381)
Q Consensus 236 ---i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~ 310 (381)
..+..+ |.....+........++||+|++..+++|++. +++..+++++.++|||||.+++............
T Consensus 132 ~~~~~~~~~-Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~-- 208 (263)
T d2g72a1 132 ARVKRVLPI-DVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG-- 208 (263)
T ss_dssp HHEEEEECC-CTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET--
T ss_pred hhhhccccc-cccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC--
Confidence 123334 54432211111234578999999999999963 3688999999999999999877654322100001
Q ss_pred hhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 311 GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 311 ~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
..-++ ....+.+++.+.+. ++||++++.+..
T Consensus 209 ----~~~~~-~~~~t~e~v~~~l~-~aGf~v~~~~~~ 239 (263)
T d2g72a1 209 ----EARLT-VVPVSEEEVREALV-RSGYKVRDLRTY 239 (263)
T ss_dssp ----TEEEE-CCCCCHHHHHHHHH-HTTEEEEEEEEE
T ss_pred ----Ccccc-cCCCCHHHHHHHHH-HCCCeEEEEEEe
Confidence 11111 12346777766655 599999877643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7.5e-16 Score=137.62 Aligned_cols=114 Identities=15% Similarity=0.060 Sum_probs=90.6
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..+.+.+. .+|.+|||||||+|..+..++++.+.+|+++|+|+.+++.|+++....+ .++.+... ++.....
T Consensus 44 ~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~-~~~~~~~---- 115 (229)
T d1zx0a1 44 HALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKG-LWEDVAP---- 115 (229)
T ss_dssp HHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEES-CHHHHGG----
T ss_pred HHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccc-ccccccc----
Confidence 34444443 6788999999999999999998755789999999999999999987654 35777777 7665431
Q ss_pred ccCCCcccEEE-----EchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVF-----ICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Iv-----s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.++.++||.|+ +...++|+ .+...+++++.++|||||++++.
T Consensus 116 ~~~~~~fD~i~fD~~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 116 TLPDGHFDGILYDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccceeecccccccccccc--cCHHHHHHHHHHHcCCCcEEEEE
Confidence 14568898887 56777887 56889999999999999998763
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.4e-14 Score=128.76 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=93.5
Q ss_pred HHHHHHHc--CCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCC----CCeEEEEecCc
Q 047022 173 VSVLIEKV--KLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQ----DTSDYIFVITV 244 (381)
Q Consensus 173 ~~~l~~~l--~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~----~~i~~~~~~d~ 244 (381)
...+++.+ .++||++|||||||+|..+..+++. +..+|+++|+++++++.|++++...++. .++.+..+ |.
T Consensus 63 ~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g-D~ 141 (224)
T d1i1na_ 63 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-DG 141 (224)
T ss_dssp HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES-CG
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe-ec
Confidence 44677777 6789999999999999999988876 4579999999999999999998876542 47899999 98
Q ss_pred cccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.... ...++||+|++...+++++. .+.+.|||||++++.+..
T Consensus 142 ~~~~------~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv~~ 183 (224)
T d1i1na_ 142 RMGY------AEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILPVGP 183 (224)
T ss_dssp GGCC------GGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEESC
T ss_pred cccc------chhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEEEcc
Confidence 7765 24578999999999888853 367899999998886644
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.52 E-value=1.4e-14 Score=126.66 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=92.6
Q ss_pred CCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+..|||||||+|..+..+|+. ++..++|+|+++.++..|.+++...++. |+.+..+ |+..+.. .++++++|.|
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~-Da~~l~~----~~~~~~~d~v 103 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNI-DADTLTD----VFEPGEVKRV 103 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECC-CGGGHHH----HCCTTSCCEE
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-Cchhccc-chhhhhc----ccCchhhhcc
Confidence 458999999999999999988 7899999999999999999999999985 8999999 9987641 2567899999
Q ss_pred EEchhhHhhChhc------HHHHHHHHHhccccCceEEEEcCCC
Q 047022 264 FICGMIEAVGHDY------MEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 264 vs~~~l~~~~~~~------~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
++.....+..... .+.+++.++++|||||.+++.+...
T Consensus 104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~ 147 (204)
T d2fcaa1 104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR 147 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECCh
Confidence 9887665542211 2589999999999999988876443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.7e-14 Score=132.38 Aligned_cols=118 Identities=14% Similarity=0.223 Sum_probs=94.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHc----------CCCCCeEE
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEA----------GLQDTSDY 238 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~----------gl~~~i~~ 238 (381)
.....|+..++++||++|||+|||+|.++..+|+. ++.+|+++|+++++++.|+++++.. +..+++++
T Consensus 85 kD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~ 164 (324)
T d2b25a1 85 KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 164 (324)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred ccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence 34568899999999999999999999999999987 5679999999999999999998753 44578999
Q ss_pred EEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 239 IFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 239 ~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..+ |+.+... .+....||.|+.. ++ ++..++.++.++|||||++++-.|+
T Consensus 165 ~~~-di~~~~~----~~~~~~fD~V~LD-----~p--~P~~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 165 IHK-DISGATE----DIKSLTFDAVALD-----ML--NPHVTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp EES-CTTCCC-----------EEEEEEC-----SS--STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred Eec-chhhccc----ccCCCCcceEeec-----Cc--CHHHHHHHHHHhccCCCEEEEEeCC
Confidence 999 9876541 1345789999873 53 3567899999999999998876543
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.49 E-value=6.7e-14 Score=123.90 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=89.9
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
...+++.+.++++++|||||||+|.++..+++. +.+|+++|+++++++.|+++.... .++.+..+ |.....+
T Consensus 59 ~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~-d~~~g~~--- 130 (224)
T d1vbfa_ 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY---NNIKLILG-DGTLGYE--- 130 (224)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEES-CGGGCCG---
T ss_pred HHHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc---cccccccC-chhhcch---
Confidence 346788999999999999999999999999885 889999999999999999886542 58999999 8766442
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|++..+++++++ .+.+.|||||++++-+.
T Consensus 131 ---~~~pfD~Iiv~~a~~~ip~--------~l~~qLk~GGrLV~pvg 166 (224)
T d1vbfa_ 131 ---EEKPYDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIG 166 (224)
T ss_dssp ---GGCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred ---hhhhHHHHHhhcchhhhhH--------HHHHhcCCCCEEEEEEc
Confidence 3478999999998888853 35678999999877543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=7.3e-14 Score=131.19 Aligned_cols=112 Identities=21% Similarity=0.290 Sum_probs=93.0
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+.+.....++++|||||||+|.+++.+++....+|+++|.|+ ++..|++.....++.+++++..+ |..+++ +
T Consensus 30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~-~~~~l~------~ 101 (328)
T d1g6q1_ 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRG-KLEDVH------L 101 (328)
T ss_dssp HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEES-CTTTSC------C
T ss_pred HHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEe-ehhhcc------C
Confidence 333334457899999999999999999986335899999996 67889999999999999999999 999887 5
Q ss_pred CCCcccEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEE
Q 047022 256 FLGNFSTVFICGMIEAVGH-DYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~ 295 (381)
++.+||+|++..+.+++.. .....++..+.++|||||+++
T Consensus 102 ~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred cccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 6689999999877766643 357888999999999999954
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.47 E-value=1.5e-13 Score=122.01 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=87.3
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
++.+.++||++|||+|||+|..+.++++. ++.+|+++|+|+.+++.++++++.. .++..... |....... .
T Consensus 66 l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~-d~~~~~~~---~ 138 (227)
T d1g8aa_ 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILG-DATKPEEY---R 138 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEEC-CTTCGGGG---T
T ss_pred ccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEE-ECCCcccc---c
Confidence 35567899999999999999999999997 4579999999999999999987654 36777777 77654310 1
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.....+|+|++. +.|. .+...+++++.+.|||||.++++.
T Consensus 139 ~~~~~vD~i~~d--~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 139 ALVPKVDVIFED--VAQP--TQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp TTCCCEEEEEEC--CCST--THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceEEEEEE--cccc--chHHHHHHHHHHhcccCCeEEEEE
Confidence 234678888774 3333 457889999999999999988765
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.46 E-value=1.3e-13 Score=120.52 Aligned_cols=112 Identities=20% Similarity=0.255 Sum_probs=91.7
Q ss_pred CCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
...|||||||+|.++..+|+. ++..++|+|+++.++..|.+++...+++ ++.+..+ |+.++.. .++.+++|.|
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~-da~~l~~----~~~~~~~~~i 105 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWV-DGSDLTD----YFEDGEIDRL 105 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEEC-CSSCGGG----TSCTTCCSEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeec-CHHHHhh----hccCCceehh
Confidence 348999999999999999988 7899999999999999999999999986 8999999 9988752 2567899999
Q ss_pred EEchhhHhhChhc------HHHHHHHHHhccccCceEEEEcCCCC
Q 047022 264 FICGMIEAVGHDY------MEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 264 vs~~~l~~~~~~~------~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
++...-.+..... ...+++.+.++|||||.+.+.+....
T Consensus 106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~ 150 (204)
T d1yzha1 106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG 150 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCcc
Confidence 9875433221111 26899999999999999988775433
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=8.1e-14 Score=130.17 Aligned_cols=105 Identities=25% Similarity=0.279 Sum_probs=89.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
+.+|++|||||||+|.+++.+++. | .+|+++|.|+. ...+++.+..+++.+++++..+ |..+++ ++.++|
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~-~~~~~~------~~~~~~ 101 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKG-KVEEVE------LPVEKV 101 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEES-CTTTCC------CSSSCE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEec-cHHHcc------ccccee
Confidence 447899999999999999999986 6 58999999975 5677888888899999999999 999987 456899
Q ss_pred cEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEE
Q 047022 261 STVFICGMIEAVGH-DYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 261 D~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~ 295 (381)
|+|++..+.+++.. ..++.++..+.++|||||.++
T Consensus 102 D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 102 DIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 99999776665543 357899999999999999954
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.45 E-value=1.6e-13 Score=120.67 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=96.2
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
.+..+++.+.++++++|||||||+|+.+..+++..+.+|+++|.++.+++.|++++...++. ++.+..+ |.....+
T Consensus 66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~g-d~~~g~~-- 141 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILG-DGSKGFP-- 141 (215)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEES-CGGGCCG--
T ss_pred hHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEEC-ccccCCc--
Confidence 44578899999999999999999999999998866778999999999999999999999885 9999999 9877542
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|++..++++++. . +.+.|||||++++-..
T Consensus 142 ----~~~pfD~Iiv~~a~~~ip~----~----l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 142 ----PKAPYDVIIVTAGAPKIPE----P----LIEQLKIGGKLIIPVG 177 (215)
T ss_dssp ----GGCCEEEEEECSBBSSCCH----H----HHHTEEEEEEEEEEEC
T ss_pred ----ccCcceeEEeecccccCCH----H----HHHhcCCCCEEEEEEc
Confidence 4588999999999988863 2 4667999999877553
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.9e-13 Score=125.99 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=90.7
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
+.+.....++++|||||||+|.+++.+|+. | .+|+++|.|+.+. .+++.....+..+++++..+ |..+++
T Consensus 27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~-~~~~l~------ 97 (311)
T d2fyta1 27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKG-KIEEVH------ 97 (311)
T ss_dssp HHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEES-CTTTSC------
T ss_pred HHhccccCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEe-eHHHhc------
Confidence 444445568899999999999999999986 6 5899999999875 46667777888889999999 999987
Q ss_pred cCCCcccEEEEchhhHhhChh-cHHHHHHHHHhccccCceEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHD-YMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~~ 295 (381)
++..+||+|++..+.+++..+ .++.++....++|||||+++
T Consensus 98 ~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 98 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 456899999997776666544 36677888899999999954
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=6.2e-13 Score=120.43 Aligned_cols=106 Identities=10% Similarity=0.044 Sum_probs=89.0
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
++.+. +++|.+|||+|||+|.+++.+|++..++|+++|+|+.+++.++++++.+++.+++++..+ |+.++.
T Consensus 100 ri~~~--~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~-D~~~~~------ 170 (260)
T d2frna1 100 RMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM-DNRDFP------ 170 (260)
T ss_dssp HHHHH--CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-CTTTCC------
T ss_pred HHHhh--cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEc-chHHhc------
Confidence 34444 368999999999999999999987557999999999999999999999999999999999 999887
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+.||.|++.. + .....++..+.++|+|||.+.+
T Consensus 171 -~~~~~D~Ii~~~-----p-~~~~~~l~~a~~~l~~gG~lh~ 205 (260)
T d2frna1 171 -GENIADRILMGY-----V-VRTHEFIPKALSIAKDGAIIHY 205 (260)
T ss_dssp -CCSCEEEEEECC-----C-SSGGGGHHHHHHHEEEEEEEEE
T ss_pred -cCCCCCEEEECC-----C-CchHHHHHHHHhhcCCCCEEEE
Confidence 447899999762 1 2235677788899999999644
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.40 E-value=1.6e-12 Score=116.68 Aligned_cols=156 Identities=12% Similarity=0.070 Sum_probs=111.7
Q ss_pred HHHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.....+++.+. .....+|||||||+|.++..++++ ++.+++..|+. +.+ ...+..+++++..+ |+.+..
T Consensus 67 ~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi-------~~~~~~~ri~~~~g-d~~~~~ 137 (244)
T d1fp1d2 67 TEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVI-------ENAPPLSGIEHVGG-DMFASV 137 (244)
T ss_dssp HHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHH-------TTCCCCTTEEEEEC-CTTTCC
T ss_pred HHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhh-------hccCCCCCeEEecC-Cccccc
Confidence 33456777777 456689999999999999999988 88999999984 332 33455679999999 986533
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc---CCCCCCCCCC-chhh--hhhhccCCCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV---PDQCYDEHSL-GPGF--IKEYIFPSGC 322 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~---~~~~~~~~~~-~~~~--i~~yi~pgg~ 322 (381)
...|+++...+++++++++...+++++++.|+|||+++|.. +......... .... +.-....+|.
T Consensus 138 ---------p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ 208 (244)
T d1fp1d2 138 ---------PQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGR 208 (244)
T ss_dssp ---------CCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCC
T ss_pred ---------ccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCc
Confidence 24599999999999999899999999999999999977653 2222111100 0000 1111234667
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEE
Q 047022 323 LPSLRRVTSAMTSSSRLCVEHLE 345 (381)
Q Consensus 323 lp~~~~~~~~l~~~~Gf~v~~~~ 345 (381)
..+..++.+ +.+++||+.+++.
T Consensus 209 ert~~e~~~-ll~~AGF~~v~v~ 230 (244)
T d1fp1d2 209 ERTEKQYEK-LSKLSGFSKFQVA 230 (244)
T ss_dssp CEEHHHHHH-HHHHTTCSEEEEE
T ss_pred CCCHHHHHH-HHHHcCCCceEEE
Confidence 778888855 4456999987764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=1.2e-12 Score=125.14 Aligned_cols=121 Identities=10% Similarity=0.134 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcC-------CC-CCeEEE-
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAG-------LQ-DTSDYI- 239 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~g-------l~-~~i~~~- 239 (381)
...+..+++.+.++++++|||||||+|.+++.+|+..++ +++|||+|+.|++.|+++....+ .. ..+.+.
T Consensus 202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~ 281 (406)
T d1u2za_ 202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 281 (406)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence 345678999999999999999999999999999988665 89999999999999999876532 11 123332
Q ss_pred EecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 240 FVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 240 ~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+ +....+.. ...-..+|+|++.. +.|. .++...+.++.+.|||||+++++
T Consensus 282 ~~-~f~~~~~~---d~~~~~adVV~inn-~~f~--~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 282 KK-SFVDNNRV---AELIPQCDVILVNN-FLFD--EDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp SS-CSTTCHHH---HHHGGGCSEEEECC-TTCC--HHHHHHHHHHHTTCCTTCEEEES
T ss_pred ee-chhhcccc---ccccccceEEEEec-ccCc--hHHHHHHHHHHHhcCCCcEEEEe
Confidence 22 33222100 00114578888654 3344 56889999999999999998764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.31 E-value=1.5e-12 Score=115.08 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=88.7
Q ss_pred HHHHHHHc--CCCCCCEEEEecCCchHHHHHHHHhc-------CCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEE
Q 047022 173 VSVLIEKV--KLVKGQEVLEIGCGWGTLAIEIVRQT-------GCKYTGITLSELQLKYAEIKVKEAGL----QDTSDYI 239 (381)
Q Consensus 173 ~~~l~~~l--~~~~~~~VLDiGcG~G~~~~~la~~~-------~~~v~gvDis~~~~~~a~~~~~~~gl----~~~i~~~ 239 (381)
...+++.+ .++|+++|||||||+|+.+..+++.. +.+|+++|+++++++.|++++...++ ..++.+.
T Consensus 67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~ 146 (223)
T d1r18a_ 67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 146 (223)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence 34677776 68899999999999999998887652 24899999999999999988654321 1479999
Q ss_pred EecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 240 FVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 240 ~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.+ |..+..+ ..++||+|++...+++++. .+.+.|||||++++-+.
T Consensus 147 ~~-d~~~~~~------~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 147 EG-DGRKGYP------PNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVPVG 191 (223)
T ss_dssp ES-CGGGCCG------GGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred ec-ccccccc------cccceeeEEEEeechhchH--------HHHHhcCCCcEEEEEEe
Confidence 99 9877652 3478999999999888753 35789999999877554
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=7.7e-12 Score=113.61 Aligned_cols=115 Identities=9% Similarity=0.125 Sum_probs=90.4
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..+.... ..+.+|||+|||+|..++.++.. +..+|+++|+|+..++.|++++...++. ++++..+ |+.+..
T Consensus 100 ~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~-d~~~~~----- 171 (274)
T d2b3ta1 100 QALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQS-DWFSAL----- 171 (274)
T ss_dssp HHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECC-STTGGG-----
T ss_pred hHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-cceeeec-cccccc-----
Confidence 3444443 45578999999999999999887 7889999999999999999999999984 7999999 886533
Q ss_pred ccCCCcccEEEEchh-------------hHhhCh----------hcHHHHHHHHHhccccCceEEEEcC
Q 047022 254 ELFLGNFSTVFICGM-------------IEAVGH----------DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~-------------l~~~~~----------~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|+|+-- ..|-|. ..+..+++.+.+.|+|||.+++...
T Consensus 172 --~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 172 --AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp --TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred --CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4578999999621 111110 2356788999999999999988753
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.28 E-value=6.7e-12 Score=117.28 Aligned_cols=117 Identities=16% Similarity=0.089 Sum_probs=90.3
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+++|.+|||+|||+|.+++.++.....+|+++|+|+.+++.+++++..+|+.+++++..+ |+.+.... + .....+||
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~-d~~~~~~~-~-~~~~~~fD 219 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG-SAFEEMEK-L-QKKGEKFD 219 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHH-H-HHTTCCEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeec-hhhhhhHH-H-HhccCCCC
Confidence 468999999999999999999986334899999999999999999999999889999999 97653100 0 01347899
Q ss_pred EEEEchhhHhhC-------hhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 262 TVFICGMIEAVG-------HDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 262 ~Ivs~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+|++.-....-. ..++..++..+.++|+|||+++.++...
T Consensus 220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 999842110000 1246778999999999999988877554
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.27 E-value=1.2e-11 Score=110.76 Aligned_cols=146 Identities=9% Similarity=0.046 Sum_probs=104.6
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
...+|||||||+|.++..++++ ++.++++.|+. +.+ ...+..+++++..+ |+.+.. ..+|+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi-------~~~~~~~rv~~~~g-D~f~~~---------p~aD~ 141 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVV-------ENLSGSNNLTYVGG-DMFTSI---------PNADA 141 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHH-------TTCCCBTTEEEEEC-CTTTCC---------CCCSE
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHH-------HhCcccCceEEEec-CcccCC---------CCCcE
Confidence 3468999999999999999988 78899999984 333 23456689999999 987643 35899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccC---ceEEEEc---CCCCCCCCCCchhhh--hhhccCCCCCCCHHHHHHHHH
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAEN---GLSCSTV---PDQCYDEHSLGPGFI--KEYIFPSGCLPSLRRVTSAMT 334 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg---G~~~i~~---~~~~~~~~~~~~~~i--~~yi~pgg~lp~~~~~~~~l~ 334 (381)
++...++|++++++...+++++++.|+|| |+++|.. +.............+ ......+|...+.+++.+ +.
T Consensus 142 ~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~-ll 220 (244)
T d1fp2a2 142 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKK-LF 220 (244)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHH-HH
T ss_pred EEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHH-HH
Confidence 99999999999988999999999999999 5555532 221111100001111 111124677788888855 45
Q ss_pred hcCCcEEEEEEecc
Q 047022 335 SSSRLCVEHLENIE 348 (381)
Q Consensus 335 ~~~Gf~v~~~~~~~ 348 (381)
+++||+++++...+
T Consensus 221 ~~AGf~~~~i~~~~ 234 (244)
T d1fp2a2 221 IEAGFQHYKISPLT 234 (244)
T ss_dssp HHTTCCEEEEEEEE
T ss_pred HHcCCceEEEEECC
Confidence 56999998876654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.27 E-value=1.7e-11 Score=109.79 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=111.1
Q ss_pred HHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 172 KVSVLIEKVKLV-KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 172 ~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
....++...... ...+|||||||.|.++..++++ ++.+++++|+.+. + ......+++++..+ |+.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~-d~~~~~- 137 (243)
T d1kyza2 68 TMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDAPSYPGVEHVGG-DMFVSI- 137 (243)
T ss_dssp HHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTCCCCTTEEEEEC-CTTTCC-
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhcccCCceEEecc-cccccC-
Confidence 344566666543 3578999999999999999998 7899999999653 2 23344578999999 986532
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC---CCCCCCCCC----chhhhhhhccCCCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP---DQCYDEHSL----GPGFIKEYIFPSGC 322 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~---~~~~~~~~~----~~~~i~~yi~pgg~ 322 (381)
...|.++...++++.++++...+++++++.|+|||+++|... ......... ..++..--..++|.
T Consensus 138 --------P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ 209 (243)
T d1kyza2 138 --------PKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGK 209 (243)
T ss_dssp --------CCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCC
T ss_pred --------CCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCC
Confidence 235778888999999988999999999999999999776532 111111000 01111112356777
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 323 LPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 323 lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
..+.+++. .+.+++||+.+++....
T Consensus 210 ert~~e~~-~ll~~AGf~~vkv~~~~ 234 (243)
T d1kyza2 210 ERTQKEFE-DLAKGAGFQGFKVHCNA 234 (243)
T ss_dssp CEEHHHHH-HHHHHHCCSCEEEEEEE
T ss_pred cCCHHHHH-HHHHHcCCCcEEEEEeC
Confidence 78888885 55556999988876543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.23 E-value=1.1e-11 Score=115.47 Aligned_cols=112 Identities=18% Similarity=0.117 Sum_probs=88.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+|.+|||++||+|.++++++. .+.+|+++|+|+.+++.|++++..+|+. +++++.+ |..+.... + ....++||+
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~-d~~~~~~~-~-~~~~~~fD~ 218 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEA-NAFDLLRR-L-EKEGERFDL 218 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEES-CHHHHHHH-H-HHTTCCEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCC-Ccceeec-cHHHHhhh-h-HhhhcCCCE
Confidence 3689999999999999999987 4779999999999999999999999985 7999999 98664200 0 013478999
Q ss_pred EEEchh---------hHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 263 VFICGM---------IEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 263 Ivs~~~---------l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
|++.-- .... ..+..+++.+.++|||||.++.++...
T Consensus 219 Vi~DpP~~~~~~~~~~~~~--~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 219 VVLDPPAFAKGKKDVERAY--RAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp EEECCCCSCCSTTSHHHHH--HHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEcCCccccchHHHHHHH--HHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 997421 1111 346778999999999999988877553
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.22 E-value=1.9e-11 Score=101.56 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=85.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
.|.+|||+|||+|.+++.++.+...+|+++|.++.+++.+++++...++.++++++.+ |..... ....++||+|
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~-D~~~~l-----~~~~~~fDiI 87 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKM-EAERAI-----DCLTGRFDLV 87 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECS-CHHHHH-----HHBCSCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcc-cccccc-----ccccccccee
Confidence 6889999999999999998886234999999999999999999999999889999999 987642 1245889999
Q ss_pred EEchhhHhhChhcHHHHHHHHH--hccccCceEEEEcCC
Q 047022 264 FICGMIEAVGHDYMEELFSCCE--SLLAENGLSCSTVPD 300 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~--~~LkpgG~~~i~~~~ 300 (381)
++.--... ......+..+. ++|+|+|.+++..+.
T Consensus 88 f~DPPy~~---~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 88 FLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp EECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred Eechhhcc---chHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 98632111 22345555554 579999999887543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=3e-11 Score=106.23 Aligned_cols=119 Identities=11% Similarity=0.127 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
-+.+..+++..+ .++|||||||+|.-++.+++. .+++++++|++++..+.|++.+...|+.+++++..+ |+.+.
T Consensus 48 g~lL~~L~~~~~---~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~G-da~e~ 123 (219)
T d2avda1 48 AQLLANLARLIQ---AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK-PALET 123 (219)
T ss_dssp HHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES-CHHHH
T ss_pred HHHHHHHHHccC---CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEe-ehhhc
Confidence 445555555553 469999999999999999987 368999999999999999999999999999999999 87654
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+..+.....++||+|+.. ...+++..+++.+.++|+|||.+++.
T Consensus 124 l~~~~~~~~~~~fD~ifiD-----~dk~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVVD-----ADKENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp HHHHHHTTCTTCEEEEEEC-----SCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhhhhcccCCccEEEEe-----CCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 2111111235789999997 34456788999999999999998875
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=5.1e-11 Score=104.50 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc
Q 047022 167 VGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV 244 (381)
Q Consensus 167 ~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~ 244 (381)
..+-+.+..+++..+ ..+|||||||+|..++.+++. .+++++++|+++++.+.|++++...|+.++|+++.+ |.
T Consensus 42 ~~~G~lL~~lv~~~k---pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~G-d~ 117 (214)
T d2cl5a1 42 DAKGQIMDAVIREYS---PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNG-AS 117 (214)
T ss_dssp HHHHHHHHHHHHHHC---CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CH
T ss_pred HHHHHHHHHHHHhhC---CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeec-cc
Confidence 334456666776664 359999999999999999986 468999999999999999999999999999999999 88
Q ss_pred cccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.+.-++-...+..++||+|+....-... .....+.++.++|||||++++
T Consensus 118 ~e~l~~l~~~~~~~~~D~ifiD~~~~~~---~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 118 QDLIPQLKKKYDVDTLDMVFLDHWKDRY---LPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp HHHGGGHHHHSCCCCEEEEEECSCGGGH---HHHHHHHHHTTCEEEEEEEEE
T ss_pred cccccchhhcccccccceeeeccccccc---ccHHHHHHHhCccCCCcEEEE
Confidence 7652111011234689999987332211 122346777889999998765
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.13 E-value=7.7e-10 Score=101.54 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEecCccccCc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD-TSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~-~i~~~~~~d~~~l~~ 249 (381)
+.+...+... .++.+|||++||+|.++++++.. |++|++||.|+.+++.|++++..+++.+ +++++.+ |+.+.-.
T Consensus 121 ~~~~~~~~~~--~~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~-D~~~~l~ 196 (309)
T d2igta1 121 EWLKNAVETA--DRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE-DAMKFIQ 196 (309)
T ss_dssp HHHHHHHHHS--SSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECS-CHHHHHH
T ss_pred HHHHHHHhhc--cCCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeC-CHHHhHH
Confidence 3334444443 46889999999999999999985 8899999999999999999999998865 6899999 9865420
Q ss_pred CCccccCCCcccEEEEchh---------hHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 250 TNMTELFLGNFSTVFICGM---------IEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~---------l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.. .....+||+||+.-- ...+ ..+...+++.+.++|+|||.+++.+
T Consensus 197 ~~--~~~~~~fD~IilDPP~f~~~~~~~~~~~-~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 197 RE--ERRGSTYDIILTDPPKFGRGTHGEVWQL-FDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp HH--HHHTCCBSEEEECCCSEEECTTCCEEEH-HHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HH--hhcCCCCCEEEECCCcccccccchhHHH-HHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 00 012478999997310 0011 1245667788999999999855543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=7.1e-11 Score=101.66 Aligned_cols=122 Identities=21% Similarity=0.251 Sum_probs=94.2
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
++.+++.+.+.++..+||++||+|+.+..++++ ++++|+|+|.++++++.|++++...+ +++.+..+ ++.++.. .
T Consensus 12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~-~f~~~~~-~ 87 (192)
T d1m6ya2 12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKV-SYREADF-L 87 (192)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEEC-CGGGHHH-H
T ss_pred HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhH-HHhhHHH-H
Confidence 456788888999999999999999999999987 67899999999999999999987654 68999999 9877530 0
Q ss_pred ccccCCCcccEEEEchhh--Hhh-----ChhcHHHHHHHHHhccccCceEEEEc
Q 047022 252 MTELFLGNFSTVFICGMI--EAV-----GHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l--~~~-----~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+..+..++||.|+....+ .++ +-......+..+.++|+|||.+++..
T Consensus 88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 011335789999864322 111 11346788999999999999976654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.10 E-value=1.3e-10 Score=107.75 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=88.4
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
+.+|.+|||++||+|.++++++.. |+ +|+++|+|+..++.+++++..+++. .+++++.+ |+.+.-.. + .....+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~-d~~~~l~~-~-~~~~~~ 217 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM-DVFDYFKY-A-RRHHLT 217 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES-CHHHHHHH-H-HHTTCC
T ss_pred hhCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEc-cHHHHHHH-H-HhhcCC
Confidence 347899999999999999998875 55 8999999999999999999999985 57999999 98653100 0 012468
Q ss_pred ccEEEEchh--------hHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 260 FSTVFICGM--------IEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 260 fD~Ivs~~~--------l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
||+|++.-- .... ..++..+++.+.++|+|||.+++++...
T Consensus 218 fD~Ii~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 218 YDIIIIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp EEEEEECCCCC-----CCCCH-HHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCEEEEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999997411 1111 1346788999999999999998887553
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.09 E-value=9.1e-11 Score=99.26 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=77.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+.+|.+|||+|||+|.+++.++.+ |++++++|.++.+++.++++++..++.+++..... |...... .....+||
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~-d~~~~~~----~~~~~~fD 112 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPV-EVFLPEA----KAQGERFT 112 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH-HHHHHHH----HHTTCCEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeeh-hcccccc----cccCCccc
Confidence 357889999999999999998886 89999999999999999999999998765555444 3211100 12347899
Q ss_pred EEEEchhhHhhChhcHHHHHHHH--HhccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCC--ESLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~--~~~LkpgG~~~i~~~~ 300 (381)
+|++.--+. . +....+..+ ..+|+|||++++..+.
T Consensus 113 ~If~DPPY~-~---~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 113 VAFMAPPYA-M---DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp EEEECCCTT-S---CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred eeEEccccc-c---CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 999853221 1 122333333 3579999998887644
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.08 E-value=2.6e-10 Score=98.94 Aligned_cols=83 Identities=12% Similarity=0.092 Sum_probs=67.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+.....--.|.+|||+|||+|.+++.++.....+|+|+|+++.+++.+++++...+. +.++... |...++
T Consensus 37 ~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~-d~~~~~------ 107 (201)
T d1wy7a1 37 WLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIG-DVSEFN------ 107 (201)
T ss_dssp HHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEES-CGGGCC------
T ss_pred HHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEEC-chhhhC------
Confidence 3344454456889999999999999998886335999999999999999999887764 5889999 987766
Q ss_pred cCCCcccEEEEchhh
Q 047022 255 LFLGNFSTVFICGMI 269 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l 269 (381)
++||+|+++--+
T Consensus 108 ---~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 108 ---SRVDIVIMNPPF 119 (201)
T ss_dssp ---CCCSEEEECCCC
T ss_pred ---CcCcEEEEcCcc
Confidence 789999997543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.07 E-value=6.6e-10 Score=97.95 Aligned_cols=119 Identities=14% Similarity=0.153 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
-+.+..+++..+ ..+|||||++.|.-++.+++. .+++++++|.+++..+.|++.+...|+.++|+++.+ ++.+.
T Consensus 48 g~~L~~L~~~~~---~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g-~a~~~ 123 (227)
T d1susa1 48 GQFLSMLLKLIN---AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG-PALPV 123 (227)
T ss_dssp HHHHHHHHHHHT---CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES-CHHHH
T ss_pred HHHHHHHHHhcC---CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeeh-HHHHH
Confidence 345556666654 469999999999999999986 368999999999999999999999999999999999 88654
Q ss_pred CcCCcc-ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 248 KPTNMT-ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 248 ~~~~l~-~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
-++.+. ....++||+|+.- ....++..+++.+.++|+|||.+++.
T Consensus 124 L~~l~~~~~~~~~fD~iFiD-----a~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIFVD-----ADKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHHHCGGGTTCBSEEEEC-----SCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHhccccCCceeEEEec-----cchhhhHHHHHHHHhhcCCCcEEEEc
Confidence 211000 0124689999997 33456889999999999999998875
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.2e-09 Score=96.09 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=67.2
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
+..+|||+|||+|..++.++.+ ++.+++|+|+|+++++.|++++..+++.+++.+... +........+.....++||+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~-~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKV-PQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-CTTCSSTTTSTTCCSCCBSE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeee-ccHHhhhhhhhhcccCceeE
Confidence 3468999999999999999887 789999999999999999999999999999999887 65432211111123578999
Q ss_pred EEEch
Q 047022 263 VFICG 267 (381)
Q Consensus 263 Ivs~~ 267 (381)
|+|+-
T Consensus 140 ivsNP 144 (250)
T d2h00a1 140 CMCNP 144 (250)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.03 E-value=1.1e-09 Score=98.83 Aligned_cols=111 Identities=9% Similarity=0.024 Sum_probs=84.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+..+|+|+|||+|..+..+++.++++|+++|+|+..++.|+++++..++.+++.+..+ |+.+..+ ...++||+|
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~-~~~~~~~-----~~~~~fDlI 183 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG-EFLEPFK-----EKFASIEMI 183 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES-STTGGGG-----GGTTTCCEE
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeec-ccccccc-----cccCcccEE
Confidence 4468999999999999999887889999999999999999999999999888999998 8876531 133789999
Q ss_pred EEchh----hHhhC--------------hhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 264 FICGM----IEAVG--------------HDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 264 vs~~~----l~~~~--------------~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+|+-- -+..+ .+.+.-+-+-+.+.|+|||.+++....
T Consensus 184 VsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~ 238 (271)
T d1nv8a_ 184 LSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 238 (271)
T ss_dssp EECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred EEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence 99621 00110 011222223366889999998887653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.00 E-value=6.3e-10 Score=95.83 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=59.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
-.|++|||+|||+|.+++.++.....+|+++|+++.+++.|++++ .++++..+ |+.+++ ++||+
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~-D~~~l~---------~~fD~ 110 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVA-DVSEIS---------GKYDT 110 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEEC-CGGGCC---------CCEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEE-ehhhcC---------CcceE
Confidence 368999999999999999888853358999999999999999874 36899999 998877 78999
Q ss_pred EEEch
Q 047022 263 VFICG 267 (381)
Q Consensus 263 Ivs~~ 267 (381)
|+++-
T Consensus 111 Vi~NP 115 (197)
T d1ne2a_ 111 WIMNP 115 (197)
T ss_dssp EEECC
T ss_pred EEeCc
Confidence 99973
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.91 E-value=5.6e-09 Score=89.71 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=77.5
Q ss_pred CCCEEEEecCCchH----HHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHH--------------H----HcCC----
Q 047022 184 KGQEVLEIGCGWGT----LAIEIVRQ-----TGCKYTGITLSELQLKYAEIKV--------------K----EAGL---- 232 (381)
Q Consensus 184 ~~~~VLDiGcG~G~----~~~~la~~-----~~~~v~gvDis~~~~~~a~~~~--------------~----~~gl---- 232 (381)
+..+|+++|||+|. +++.+.+. ...+++|+|+|+..++.|++-. . ..+.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 45699999999997 44444433 1247999999999999987421 0 0000
Q ss_pred --------CCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 233 --------QDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 233 --------~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...+.+... +.....+ ...++||+|+|.+++.++.++....+++++++.|+|||.+++..
T Consensus 104 ~~~~~~~~~~~v~~~~~-~~~~~~~-----~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 104 LVRVRQELANYVEFSSV-NLLEKQY-----NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp EEEECHHHHTTEEEEEC-CTTCSSC-----CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeehHHHHHHHHHHhhh-hcccccc-----CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 022445555 4433221 13478999999999999988888899999999999999988764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.85 E-value=6.2e-09 Score=88.55 Aligned_cols=117 Identities=16% Similarity=0.108 Sum_probs=88.0
Q ss_pred HHHHcC-CCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+...+. ...|.+|||++||+|.+++.++.+ |+ +|+++|.++..++.+++++...+..+++++..+ |+.+.-.. +
T Consensus 32 lFn~l~~~~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~-D~~~~l~~-~- 107 (182)
T d2fhpa1 32 IFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKM-DANRALEQ-F- 107 (182)
T ss_dssp HHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHHHH-H-
T ss_pred HHHHHHHhcCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccc-cchhhhhh-h-
Confidence 344443 347899999999999999999997 55 799999999999999999998888889999999 98653100 0
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHh--ccccCceEEEEcC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCES--LLAENGLSCSTVP 299 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~--~LkpgG~~~i~~~ 299 (381)
.....+||+|++.--.. .......+..+.+ +|+|+|.+++..+
T Consensus 108 ~~~~~~fDlIflDPPY~---~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 108 YEEKLQFDLVLLDPPYA---KQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHTTCCEEEEEECCCGG---GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccCCCcceEEechhhh---hhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 01236899999863221 1345677777754 6999999888654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=6.8e-09 Score=88.39 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=82.3
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
.+.+|||++||+|.++++++.+...+|+.||.++..++.+++++...+.. ++++..+ |+.+... ....+||+|
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~-d~~~~l~-----~~~~~fDlI 115 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNS-NAMSFLA-----QKGTPHNIV 115 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECS-CHHHHHS-----SCCCCEEEE
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc-ceeeeee-ccccccc-----ccccccCEE
Confidence 56799999999999999998873348999999999999999999887764 7899988 8765431 235789999
Q ss_pred EEchhhHhhChhcHHHHHHHHHh--ccccCceEEEEcC
Q 047022 264 FICGMIEAVGHDYMEELFSCCES--LLAENGLSCSTVP 299 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~--~LkpgG~~~i~~~ 299 (381)
++.--.. .......+..+.+ +|+|+|.+++..+
T Consensus 116 f~DPPY~---~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 116 FVDPPFR---RGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp EECCSSS---TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EEcCccc---cchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 9963221 1235666777665 6999999888643
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.77 E-value=1.2e-08 Score=90.21 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
.+.++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+++.+++.++++.... ++++++.+ |+.+.+
T Consensus 7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~-D~l~~~- 80 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNK-DILQFK- 80 (235)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECC-CGGGCC-
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhcc---cchhhhhh-hhhhcc-
Confidence 355678999999999999999999999999999986 889999999999999999876532 58999999 999876
Q ss_pred CCccccCCCcccEEEEc
Q 047022 250 TNMTELFLGNFSTVFIC 266 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~ 266 (381)
++......|+++
T Consensus 81 -----~~~~~~~~vv~N 92 (235)
T d1qama_ 81 -----FPKNQSYKIFGN 92 (235)
T ss_dssp -----CCSSCCCEEEEE
T ss_pred -----ccccccceeeee
Confidence 233444566765
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=5.1e-08 Score=84.23 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=85.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
-++.+|+|+|||.|-.++.+|-. ++.+++.+|.+..-+...++.....++. ++++... ..++.. ...+||
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~-R~E~~~-------~~~~fD 134 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQS-RVEEFP-------SEPPFD 134 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEEC-CTTTSC-------CCSCEE
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeecc-chhhhc-------cccccc
Confidence 35679999999999888888765 7899999999999999999999998985 8999999 888876 346899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|+|..+ ..+..+++-+...++++|.+++--
T Consensus 135 ~V~sRA~------~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 135 GVISRAF------ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp EEECSCS------SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred eehhhhh------cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 9999743 246888899999999999976654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.61 E-value=4.7e-08 Score=90.61 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=83.9
Q ss_pred HcCCCCCCEEEEecCCchHHHHHHHHh------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 179 KVKLVKGQEVLEIGCGWGTLAIEIVRQ------TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~G~~~~~la~~------~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+..+++.+|||.|||+|.++..+..+ ....++|+|+++.+++.|+.+....+. ...+..+ |.....
T Consensus 112 ~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~-d~~~~~---- 184 (328)
T d2f8la1 112 VIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQ-DGLANL---- 184 (328)
T ss_dssp HHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEES-CTTSCC----
T ss_pred HhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcc-cccccc----
Confidence 345667889999999999999988754 234799999999999999988877664 4677777 665443
Q ss_pred cccCCCcccEEEEchhhHhhCh---------------h-cHHHHHHHHHhccccCceEEEEcCCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGH---------------D-YMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~---------------~-~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
...+||+|+++--+..... . -...++..+.+.|+|||++++.+|..
T Consensus 185 ---~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 185 ---LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp ---CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ---ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 4578999999743321110 0 12347899999999999987777653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.60 E-value=2.8e-08 Score=89.94 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=81.7
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc---------CCCCCeEEEEecCccccCcCCc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA---------GLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~---------gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.....+||.||+|.|..+..+.++...+|+++|+++.+++.|++.+... .-.++++++.+ |+...-.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~-Da~~~l~--- 145 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIG-DGFEFIK--- 145 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEES-CHHHHHH---
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEC-hHHHHHh---
Confidence 3456799999999999999988775569999999999999999865321 22468999999 9876531
Q ss_pred cccCCCcccEEEEchhhHhhCh---hcHHHHHHHHHhccccCceEEEEc
Q 047022 253 TELFLGNFSTVFICGMIEAVGH---DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~---~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..++||+|++...- ..+. -.-.++++.+++.|+|||++++..
T Consensus 146 ---~~~~yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 146 ---NNRGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp ---HCCCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---ccCCCCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 24789999974221 1110 123689999999999999987754
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.59 E-value=3.5e-08 Score=90.78 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=82.6
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc--C--CCCCeEEEEecCccccCcCCccccC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEA--G--LQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~--g--l~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
.+...+||.||+|.|..+..+++. ...+|+++|++++.++.|++.+... + -.++++++.+ |+.+.-. ..
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~-Da~~~l~-----~~ 148 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID-DARAYLE-----RT 148 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES-CHHHHHH-----HC
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEc-hHHHHhh-----hc
Confidence 345679999999999999999887 4569999999999999999987432 1 1358999999 9987531 13
Q ss_pred CCcccEEEEchh--h-HhhCh--hcHHHHHHHHHhccccCceEEEEc
Q 047022 257 LGNFSTVFICGM--I-EAVGH--DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 257 ~~~fD~Ivs~~~--l-~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.++||+|++-.. . ...+. -.-.++++.|.+.|+|||++++..
T Consensus 149 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 478999996431 1 00000 123689999999999999977644
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=3.3e-07 Score=85.80 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 169 q~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
....++.+++.+...++.+|||+-||.|.+++.++++ ..+|+|+|+++..++.|++++..+++. +++|..+ +..+.-
T Consensus 197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~-~~~~~~ 273 (358)
T d1uwva2 197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHE-NLEEDV 273 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEEC-CTTSCC
T ss_pred hhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccc-cceeeec-chhhhh
Confidence 3456677888888889999999999999999999985 789999999999999999999999986 8999999 876643
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
... .....++|+|+.. -|.......++.+.+. +|.-+++|+.
T Consensus 274 ~~~--~~~~~~~d~vilD-----PPR~G~~~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 274 TKQ--PWAKNGFDKVLLD-----PARAGAAGVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp SSS--GGGTTCCSEEEEC-----CCTTCCHHHHHHHHHH-CCSEEEEEES
T ss_pred hhh--hhhhccCceEEeC-----CCCccHHHHHHHHHHc-CCCEEEEEeC
Confidence 111 1234679999885 3333334556666553 6665677764
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.52 E-value=3.5e-09 Score=94.31 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
.++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+++.+++.++++... .+++++..+ |+.+++
T Consensus 17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~-D~l~~~--- 88 (245)
T d1yuba_ 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQ-DILQFQ--- 88 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT---CSEEEECCS-CCTTTT---
T ss_pred HHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhh---ccchhhhhh-hhhccc---
Confidence 3568899999999999999999999999999996 88999999999998888776542 258999999 998887
Q ss_pred ccccCCCcccEEEEch
Q 047022 252 MTELFLGNFSTVFICG 267 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~ 267 (381)
++...++.|+++-
T Consensus 89 ---~~~~~~~~vv~NL 101 (245)
T d1yuba_ 89 ---FPNKQRYKIVGNI 101 (245)
T ss_dssp ---CCCSSEEEEEEEC
T ss_pred ---cccceeeeEeeee
Confidence 4456667777763
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.50 E-value=1e-07 Score=86.79 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=84.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEecCccccCcCCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAG--L-QDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~g--l-~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+...+||-||.|.|..+..++++. ..+|+++|+++++++.|++.+.... + .++++++.+ |+...-. ...+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~-Da~~~l~-----~~~~ 161 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIA-NGAEYVR-----KFKN 161 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-CHHHHGG-----GCSS
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhh-hHHHHHh-----cCCC
Confidence 445799999999999999999874 4689999999999999999765321 1 358999999 9877641 2347
Q ss_pred cccEEEEchhhHhhCh---hcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 259 NFSTVFICGMIEAVGH---DYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~---~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+||+|++...-...+. -.-.++++.+++.|+|||.+++.....
T Consensus 162 ~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp 207 (295)
T d1inla_ 162 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 207 (295)
T ss_dssp CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred CCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence 8999997532211110 124789999999999999988866543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.49 E-value=8.8e-08 Score=83.19 Aligned_cols=111 Identities=18% Similarity=0.248 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
..+.+++.+...++.+|||.|||+|.++..+.++ ....++|+|+++..+. +..+..+..+ |.....
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----------~~~~~~~~~~-~~~~~~- 74 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----------LPPWAEGILA-DFLLWE- 74 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----------CCTTEEEEES-CGGGCC-
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----------hcccceeeee-ehhccc-
Confidence 3457888888889999999999999999888765 3468999999987433 2235677888 877665
Q ss_pred CCccccCCCcccEEEEchhhHhhC--------------------------hh-cHHHHHHHHHhccccCceEEEEcCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVG--------------------------HD-YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~--------------------------~~-~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
...+||+|+++--+.... .. -...++..+.+.|+|||++++.+|.
T Consensus 75 ------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 75 ------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp ------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 457899999874331110 00 1345678899999999997777665
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.3e-07 Score=83.55 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
+.++.+++.+.+.+++.|||||||+|.++..++++ +.+|+++++++.+++..++.+......++++++.+ |+.+.+.
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~-D~l~~~~- 84 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVG-DVLKTDL- 84 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEES-CTTTSCC-
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHH-HHhhhhh-
Confidence 55678899999999999999999999999999986 78999999999999999998876666678999999 9987651
Q ss_pred CccccCCCcccEEEEc
Q 047022 251 NMTELFLGNFSTVFIC 266 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~ 266 (381)
..++.||++
T Consensus 85 -------~~~~~vV~N 93 (278)
T d1zq9a1 85 -------PFFDTCVAN 93 (278)
T ss_dssp -------CCCSEEEEE
T ss_pred -------hhhhhhhcc
Confidence 346778886
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.44 E-value=3e-07 Score=83.49 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=84.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHc---CCCCCeEEEEecCccccCcCCccccCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEA---GLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~---gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
.+...+||-||.|.|..+..+.++.+ .+++++|+++++++.+++..... .-.++++++.+ |....-. ....
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~-Da~~~l~----~~~~ 152 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG-DGVAFLK----NAAE 152 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES-CHHHHHH----TSCT
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEc-cHHHHHh----hccc
Confidence 34557999999999999999998744 58999999999999999976432 12468999999 8765421 0134
Q ss_pred CcccEEEEch-----hhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 258 GNFSTVFICG-----MIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 258 ~~fD~Ivs~~-----~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
++||+|+... ...++ .-.++++.+++.|+|||.+++..+..
T Consensus 153 ~~yDvIi~D~~dp~~~~~~L---~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 153 GSYDAVIVDSSDPIGPAKEL---FEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp TCEEEEEECCCCTTSGGGGG---GSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred cCccEEEEcCCCCCCcchhh---CCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 6899999742 12222 34789999999999999988876543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.9e-07 Score=84.65 Aligned_cols=115 Identities=13% Similarity=0.067 Sum_probs=83.6
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHc---CCCCCeEEEEecCccccCcCCcccc
Q 047022 180 VKLVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEA---GLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~---gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+..+..++||-||.|.|..+..+.+++ ..+++++|+++++++.|++.+... --.++++++.+ |++..-. .
T Consensus 74 ~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~-Da~~~l~-----~ 147 (285)
T d2o07a1 74 CSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG-DGFEFMK-----Q 147 (285)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-CHHHHHH-----T
T ss_pred hhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEc-cHHHHHh-----c
Confidence 334556799999999999999999873 569999999999999999986531 12368999999 9876531 1
Q ss_pred CCCcccEEEEchhhHh-hC-hhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 256 FLGNFSTVFICGMIEA-VG-HDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~-~~-~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|++-..-.. .+ .-...++++.+++.|+|||.+++....
T Consensus 148 ~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 148 NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 3478999998532110 00 012457899999999999998876543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.41 E-value=7.2e-07 Score=75.28 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=87.9
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
++.+++.+.+++|..++|..||.|+.+..+.++ +++|+|+|.++++++.+++. ...++.+... ++.++.. .+
T Consensus 7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~-~f~~~~~-~l 78 (182)
T d1wg8a2 7 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQG-NFRHLKR-HL 78 (182)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-----CCTTEEEEES-CGGGHHH-HH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhc-----cccceeEeeh-HHHHHHH-HH
Confidence 456778888999999999999999999999986 78999999999999988764 2358999999 8877641 11
Q ss_pred cccCCCcccEEEEchhhH--hhCh-----hcHHHHHHHHHhccccCceEEEEc
Q 047022 253 TELFLGNFSTVFICGMIE--AVGH-----DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~--~~~~-----~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.....+++|.|+....+. ++.+ ......+......|+|||.+++..
T Consensus 79 ~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 79 AALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 122347799999743221 1110 124457888899999999976654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.40 E-value=7.3e-07 Score=81.85 Aligned_cols=120 Identities=10% Similarity=0.073 Sum_probs=90.6
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.....+..++|++|||++||.|+=+.+++.. ....++++|+++.-+...++++...|+. ++.+... |...++
T Consensus 107 l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~-d~~~~~---- 180 (313)
T d1ixka_ 107 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHS-SSLHIG---- 180 (313)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESS-CGGGGG----
T ss_pred chhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-ccccccc-cccccc----
Confidence 4455677889999999999999999998876 3568999999999999999999999885 6777777 776664
Q ss_pred cccCCCcccEEEEc------hhhHhhCh--------------hcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 253 TELFLGNFSTVFIC------GMIEAVGH--------------DYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~------~~l~~~~~--------------~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
.....||.|+.- +++..-++ .-..+.+..+.+.|||||+++.++..-.
T Consensus 181 --~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 181 --ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp --GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred --cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 235789999972 22211111 1233678899999999999888876643
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.36 E-value=2.3e-07 Score=84.75 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=81.4
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEecCccccCcCCccccCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAG--L-QDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~g--l-~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
.+...+||-||.|.|..+..+.++.+ .+|+++|+++++++.|++.+.... + .++++++.+ |....-. ...
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~-Da~~~l~-----~~~ 177 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG-DGFEFLK-----NHK 177 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS-CHHHHHH-----HCT
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEc-hHHHHHH-----hCC
Confidence 34557999999999999999998744 689999999999999999864321 1 258999999 9876531 134
Q ss_pred CcccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 258 GNFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++||+|++...-..-+. -...++++.+++.|+|||+++.....
T Consensus 178 ~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 178 NEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp TCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred CCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 78999998532211111 13468999999999999998886544
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.34 E-value=3.7e-07 Score=82.21 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=84.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHc-C--CCCCeEEEEecCccccCcCCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEA-G--LQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~-g--l~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
....+||-||.|.|..+..+.++. ..+|+++|++++.++.|++..... + -.++++++.+ |....-. ...+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~-D~~~~l~-----~~~~ 147 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD-DGFMHIA-----KSEN 147 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES-CSHHHHH-----TCCS
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEec-hHHHHHh-----hcCC
Confidence 455799999999999999999874 469999999999999999986532 1 1358999999 9876431 1347
Q ss_pred cccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 259 NFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+||+|+.-..-..-+. -.-.++++.+.++|+|||.++.....
T Consensus 148 ~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence 8999998532110000 12478999999999999998876544
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.34 E-value=1e-06 Score=74.49 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=80.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQD-TSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~-~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+.+|||+.||+|.++++++.+ |+ .|+.||.+...++..+++++..+..+ ...+... |..+.... .....+||
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~-d~~~~l~~---~~~~~~fD 117 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ-SSLDFLKQ---PQNQPHFD 117 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS-CHHHHTTS---CCSSCCEE
T ss_pred ccceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhhcccccccccccc-cccccccc---cccCCccc
Confidence 5679999999999999999997 55 89999999999999999999887754 3555655 65432200 01235799
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHh--ccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCES--LLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~--~LkpgG~~~i~~~~ 300 (381)
+|++.--... ......+..+.. +|+++|.+++..+.
T Consensus 118 lIFlDPPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 118 VVFLDPPFHF---NLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp EEEECCCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred EEEechhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 9998632211 235667777654 79999999987643
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=1.8e-06 Score=78.17 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=87.7
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..+..+..+++.+|||+++|.|+=+.+++.. .+..|+++|+++.-++..+++++..|+. ++..... |.....
T Consensus 93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~-~~~~~~----- 165 (284)
T d1sqga2 93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGD-GRYPSQ----- 165 (284)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECC-TTCTHH-----
T ss_pred ccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeecc-ccccch-----
Confidence 4455678889999999999999999999876 4478999999999999999999999875 3444433 433221
Q ss_pred ccCCCcccEEEE------chhhHhhCh-------h-------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 254 ELFLGNFSTVFI------CGMIEAVGH-------D-------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 254 ~~~~~~fD~Ivs------~~~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
....+.||.|+. .+++..-++ . -....++.+.+.|||||+++.++..-.
T Consensus 166 ~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 166 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred hcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 113468999996 223321111 1 134678889999999999888876643
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.21 E-value=4.4e-06 Score=73.18 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=84.0
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+.+|+|||+|.|-.++-++-. ++.+++.+|.+..-+...+......++. ++.++.. .++++.... ...++||+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~-R~E~~~~~~---~~~~~~D~ 144 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHD-RAETFGQRK---DVRESYDI 144 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEES-CHHHHTTCT---TTTTCEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEee-hhhhccccc---cccccceE
Confidence 5679999999999888887754 7899999999999999999988888996 8898888 887664210 12368999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|+|.. + ..+..+++-+...+++||.+++--
T Consensus 145 v~sRA----v--a~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 145 VTARA----V--ARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp EEEEC----C--SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEhh----h--hCHHHHHHHHhhhcccCCEEEEEC
Confidence 99974 3 346888999999999999966543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=3.2e-06 Score=71.09 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=80.4
Q ss_pred HHHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 171 RKVSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 171 ~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
-|+.+|.++.+ ++++.+|||+||++|+++.++.++ ....++++|+.+- ..+ +++.+..+ |+.+.
T Consensus 8 fKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~-d~~~~ 74 (180)
T d1ej0a_ 8 FKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQG-DFRDE 74 (180)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEES-CTTSH
T ss_pred HHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeec-ccccc
Confidence 45566667665 478999999999999999999886 4468999998762 122 47888998 87653
Q ss_pred CcCC-c-cccCCCcccEEEEchhhHhhChh---------cHHHHHHHHHhccccCceEEEEcCC
Q 047022 248 KPTN-M-TELFLGNFSTVFICGMIEAVGHD---------YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 248 ~~~~-l-~~~~~~~fD~Ivs~~~l~~~~~~---------~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.... . .....+++|+|+|-.+..--+.. -....+.-+.++|++||.+++-...
T Consensus 75 ~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 75 LVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 2000 0 01234789999997653322221 1235677788999999998886643
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.1e-05 Score=73.10 Aligned_cols=121 Identities=10% Similarity=0.071 Sum_probs=84.9
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+..+...+|++|||++||.|+-+.+++.. ...+++++|+++.-++.+++++...|+. ++.+... |...+.+..
T Consensus 86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~-d~~~~~~~~-- 161 (293)
T d2b9ea1 86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEE-DFLAVSPSD-- 161 (293)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEEC-CGGGSCTTC--
T ss_pred cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeeh-hhhhhcccc--
Confidence 445567889999999999999999998875 3578999999999999999999999986 7999998 988765210
Q ss_pred ccCCCcccEEEEc------hhhHhhCh---------h-------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 254 ELFLGNFSTVFIC------GMIEAVGH---------D-------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 254 ~~~~~~fD~Ivs~------~~l~~~~~---------~-------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
-..++||.|+.. +++..-++ . .....+..+. .|+|||.++.++..-.
T Consensus 162 -~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 162 -PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp -GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred -cccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 112679999963 22222111 0 0122344444 4799999877776533
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=6.6e-07 Score=79.49 Aligned_cols=74 Identities=15% Similarity=0.071 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.+.++.+++.+.+.+++.|||||||.|.++..+++. +.+|+++|+++.+++..+++... .++++++.+ |+.+.+
T Consensus 7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~-D~l~~~ 80 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQ-DAMTFN 80 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT---GGGEEEECS-CGGGCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh---ccchhHHhh-hhhhhc
Confidence 355678899999999999999999999999999985 78999999999999988875432 258999999 998775
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.14 E-value=4.3e-06 Score=79.92 Aligned_cols=123 Identities=11% Similarity=0.142 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--------------CCEEEEEcCCHHHHHHHHHHHHHcCCCC-
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--------------GCKYTGITLSELQLKYAEIKVKEAGLQD- 234 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--------------~~~v~gvDis~~~~~~a~~~~~~~gl~~- 234 (381)
+...+.+++.+...++.+|+|.+||+|++...+.++. ...+.|+|+++.....|+.++.-.+...
T Consensus 148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~ 227 (425)
T d2okca1 148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence 4566788888888889999999999999999887651 1348999999999999999888777642
Q ss_pred CeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhCh---------------hcHHHHHHHHHhccccCceEEEEcC
Q 047022 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH---------------DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 235 ~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~---------------~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...+... |..... ...+||+|+++--+..-.. .....++..+.+.|+|||++++.+|
T Consensus 228 ~~~i~~~-d~l~~~-------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 228 RSPIVCE-DSLEKE-------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CCSEEEC-CTTTSC-------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceeecC-chhhhh-------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 4567777 766544 4578999999754421100 0123589999999999999877776
Q ss_pred C
Q 047022 300 D 300 (381)
Q Consensus 300 ~ 300 (381)
+
T Consensus 300 ~ 300 (425)
T d2okca1 300 D 300 (425)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.95 E-value=4.9e-05 Score=62.62 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=73.5
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC----
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT---- 250 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~---- 250 (381)
.+++.+++++++||-+|||. |.++..+++..|++|+++|.+++-++.|++. |.. ..+ .. +.......
T Consensus 18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga~--~~~-~~-~~~~~~~~~~~~ 89 (170)
T d1e3ja2 18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GAD--VTL-VV-DPAKEEESSIIE 89 (170)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS--EEE-EC-CTTTSCHHHHHH
T ss_pred HHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CCc--EEE-ec-cccccccchhhh
Confidence 45677889999999999995 8888888888899999999999988888775 221 222 21 21111000
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.+.....+.+|+|+-. ++. +..++.+.++|+|+|++++..
T Consensus 90 ~~~~~~g~g~D~vid~-----~g~---~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 90 RIRSAIGDLPNVTIDC-----SGN---EKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp HHHHHSSSCCSEEEEC-----SCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred hhhcccccCCceeeec-----CCC---hHHHHHHHHHHhcCCceEEEe
Confidence 0001123568999876 432 566788889999999977643
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=9.4e-06 Score=79.60 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc-------------------CCEEEEEcCCHHHHHHHHHHHHHc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT-------------------GCKYTGITLSELQLKYAEIKVKEA 230 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~-------------------~~~v~gvDis~~~~~~a~~~~~~~ 230 (381)
+..++.+++.+...++.+|+|-+||+|++...+.++. ...+.|+|+++.+...|+-++.-.
T Consensus 150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~ 229 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 229 (524)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence 4556678888888899999999999999998876641 125899999999999999888766
Q ss_pred CCCCCe----EEEEecCccccCcCCccccCCCcccEEEEchhhHhhCh-----------h-cHHHHHHHHHhccccCceE
Q 047022 231 GLQDTS----DYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH-----------D-YMEELFSCCESLLAENGLS 294 (381)
Q Consensus 231 gl~~~i----~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~-----------~-~~~~~l~~~~~~LkpgG~~ 294 (381)
+....+ .+... +....+ .....+||+|+++--+.--.. . .--.++..+.+.|+|||++
T Consensus 230 ~~~~~i~~~~~~~~~-~~l~~d-----~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ 303 (524)
T d2ar0a1 230 DIEGNLDHGGAIRLG-NTLGSD-----GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA 303 (524)
T ss_dssp TCCCBGGGTBSEEES-CTTSHH-----HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred cccccccccchhhhh-hhhhhc-----ccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence 543221 23333 332211 123468999999753321100 0 1235899999999999997
Q ss_pred EEEcCC
Q 047022 295 CSTVPD 300 (381)
Q Consensus 295 ~i~~~~ 300 (381)
.+.+|+
T Consensus 304 aiIlP~ 309 (524)
T d2ar0a1 304 AVVVPD 309 (524)
T ss_dssp EEEEEH
T ss_pred EEEEeh
Confidence 777665
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.93 E-value=1.6e-06 Score=72.07 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=69.9
Q ss_pred HHHHcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 176 LIEKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.++...++||++||-+||| .|.++..+++..|++|+++|.|++.++.+++. |.. .++. ..+.+ ....
T Consensus 19 al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~---~~~~~--~~~~ 86 (168)
T d1piwa2 19 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIA---TLEEG--DWGE 86 (168)
T ss_dssp HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEE---GGGTS--CHHH
T ss_pred HHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc---EEee---ccchH--HHHH
Confidence 3456788999999999999 58888888888899999999999988888765 432 2221 11111 0001
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+.+|.|+..-.-.+ ...+....++|+|+|++++.
T Consensus 87 ~~~~~~d~vi~~~~~~~------~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 87 KYFDTFDLIVVCASSLT------DIDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp HSCSCEEEEEECCSCST------TCCTTTGGGGEEEEEEEEEC
T ss_pred hhhcccceEEEEecCCc------cchHHHHHHHhhccceEEEe
Confidence 12367999887522111 11245578899999996654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.82 E-value=4.3e-06 Score=69.88 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=72.4
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNM 252 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l 252 (381)
.++...++||++||=+|||. |.++..+++..|+ +|+++|.+++-++.+++. |.. .++ |+.+-+. +.+
T Consensus 19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~---~~i---~~~~~~~~~~v 88 (174)
T d1jqba2 19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT---DIL---NYKNGHIEDQV 88 (174)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS---EEE---CGGGSCHHHHH
T ss_pred HHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc---ccc---cccchhHHHHH
Confidence 46778899999999999997 8899999998886 799999999988888764 322 222 2222110 000
Q ss_pred ccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+. ....+|+|+-. ++. ...++...++++|+|++++.
T Consensus 89 ~~~t~g~G~D~vid~-----~g~---~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 89 MKLTNGKGVDRVIMA-----GGG---SETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp HHHTTTSCEEEEEEC-----SSC---TTHHHHHHHHEEEEEEEEEC
T ss_pred HHHhhccCcceEEEc-----cCC---HHHHHHHHHHHhcCCEEEEE
Confidence 011 23459998876 432 45567788999999997664
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.80 E-value=3.4e-05 Score=72.03 Aligned_cols=105 Identities=16% Similarity=-0.018 Sum_probs=80.4
Q ss_pred CCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCC--------------CeEEEEecCccccC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQD--------------TSDYIFVITVNCLK 248 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~--------------~i~~~~~~d~~~l~ 248 (381)
.+.+|||..||+|..++.++...+ .+|++.|+|+..++.++++++.+++.. .+.+... |+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~-Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHD-DANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEES-CHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehh-hhhhhh
Confidence 567999999999999998877634 489999999999999999999887642 2455556 654432
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
. .....||+|..-- .+ .+..++..+.+.++.||.+.+|.-+
T Consensus 124 ~-----~~~~~fDvIDiDP----fG--s~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 124 A-----ERHRYFHFIDLDP----FG--SPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp H-----HSTTCEEEEEECC----SS--CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred H-----hhcCcCCcccCCC----CC--CcHHHHHHHHHHhccCCEEEEEecC
Confidence 1 1236799888753 32 2577999999999999999988544
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.76 E-value=1.2e-05 Score=67.32 Aligned_cols=103 Identities=19% Similarity=0.162 Sum_probs=69.7
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC----
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT---- 250 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~---- 250 (381)
.+...+++|++||-+|||. |.++..+++..|+ +|+++|.+++.++.+++. |.. .++ |..+....
T Consensus 21 ~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi---~~~~~~~~~~~~ 90 (182)
T d1vj0a2 21 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTL---NRRETSVEERRK 90 (182)
T ss_dssp HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEE---ETTTSCHHHHHH
T ss_pred HHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---EEE---eccccchHHHHH
Confidence 3445678999999999985 8899999988887 899999999999888764 321 111 11111100
Q ss_pred Cccc-cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 251 NMTE-LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 251 ~l~~-~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.+ .....+|+|+.. ++. +..++...++|+|||++++.
T Consensus 91 ~i~~~~~~~g~Dvvid~-----vG~---~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 91 AIMDITHGRGADFILEA-----TGD---SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHHHTTTSCEEEEEEC-----SSC---TTHHHHHHHHEEEEEEEEEC
T ss_pred HHHHhhCCCCceEEeec-----CCc---hhHHHHHHHHhcCCCEEEEE
Confidence 0000 123469998865 432 44577788999999997654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.0002 Score=58.91 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=73.1
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC--cC
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK--PT 250 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~--~~ 250 (381)
+.+++.+++++++||=+|||. |.++..+++..|+ +|+++|.++..++.|++. |.. .+... +-.+.. ..
T Consensus 17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~-~~~~~~~~~~ 88 (171)
T d1pl8a2 17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQI-SKESPQEIAR 88 (171)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEEC-SSCCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc---ccccc-cccccccccc
Confidence 346677889999999999987 6777777777787 899999999999988765 322 12222 111110 00
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.+.......+|+|+.. ++. +..++...++++|||++++..
T Consensus 89 ~~~~~~g~g~Dvvid~-----~G~---~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 89 KVEGQLGCKPEVTIEC-----TGA---EASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp HHHHHHTSCCSEEEEC-----SCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred cccccCCCCceEEEec-----cCC---chhHHHHHHHhcCCCEEEEEe
Confidence 0000123578998886 443 567888999999999976643
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.72 E-value=1.9e-05 Score=68.78 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..|+..+.++..++|+.+|+|+|||.|+++.+++.+ ....+.|+|+--...+. -......+. +-+++....|+..+
T Consensus 52 ~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~l- 128 (257)
T d2p41a1 52 SAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFFI- 128 (257)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTTS-
T ss_pred HHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHhc-
Confidence 456677777777889999999999999999999976 23578888884221000 000000011 12344444233333
Q ss_pred cCCccccCCCcccEEEEchhhHhhCh-----hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGH-----DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~-----~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..+..|.|+|--. ++.+. .....+++-+.+.|+|||-+++-+..
T Consensus 129 -------~~~~~D~vlcDm~-ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 129 -------PPERCDTLLCDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp -------CCCCCSEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred -------CCCcCCEEEeeCC-CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 3478999999632 11111 12236778888999999998877654
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.71 E-value=2.6e-05 Score=67.99 Aligned_cols=112 Identities=12% Similarity=0.066 Sum_probs=71.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
..+..++..++ | .+|||||++.|+-+..++.. ..++++++|+.+........ ..+++++..+ |..
T Consensus 70 ~~~~eli~~~K--P-k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~g-Ds~ 139 (232)
T d2bm8a1 70 AVYHDMLWELR--P-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQG-DCS 139 (232)
T ss_dssp HHHHHHHHHHC--C-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEEC-CSS
T ss_pred HHHHHHHHHhC--C-CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeec-ccc
Confidence 33456777764 3 59999999999877766542 35799999998754332211 1258999999 876
Q ss_pred ccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+.. .+..+....+|.|+.-.. |........ + .+..+|+|||++++..
T Consensus 140 ~~~--~~~~l~~~~~dlIfID~~--H~~~~v~~~-~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 140 DLT--TFEHLREMAHPLIFIDNA--HANTFNIMK-W-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp CSG--GGGGGSSSCSSEEEEESS--CSSHHHHHH-H-HHHHTCCTTCEEEECS
T ss_pred cHH--HHHHHHhcCCCEEEEcCC--cchHHHHHH-H-HHhcccCcCCEEEEEc
Confidence 543 111234456888876543 322112222 2 3568999999988753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=5.7e-05 Score=62.20 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=70.5
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.++..+++||++||=+|||. |.++..+++..|++++++|.+++.++.+++. |.. .+. |+.+.... .
T Consensus 22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Gad---~~i---~~~~~~~~---~ 88 (168)
T d1uufa2 22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD---EVV---NSRNADEM---A 88 (168)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEE---ETTCHHHH---H
T ss_pred HHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CCc---EEE---ECchhhHH---H
Confidence 35678899999999999986 8899999998899999999999887777654 432 222 22211100 0
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+.+|.++.. ++. ...++...++|+|+|++++.
T Consensus 89 ~~~~~~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 89 AHLKSFDFILNT-----VAA---PHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp TTTTCEEEEEEC-----CSS---CCCHHHHHTTEEEEEEEEEC
T ss_pred HhcCCCceeeee-----eec---chhHHHHHHHHhcCCEEEEe
Confidence 123679998875 332 23456678899999997654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.60 E-value=0.00016 Score=59.78 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=73.0
Q ss_pred HHHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+++..+++||++||-+|||. |.++..+++..|+ .++++|.+++-++.+++. |.. ++... +-.+.. +.
T Consensus 18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~---~~i~~-~~~~~~-~~ 88 (174)
T d1f8fa2 18 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINS-KTQDPV-AA 88 (174)
T ss_dssp HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEET-TTSCHH-HH
T ss_pred HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe---EEEeC-CCcCHH-HH
Confidence 3456777899999999999986 6677778877665 678889999988888765 432 23322 211110 01
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.++.++.||+|+-. ++. ...++.+.++++|+|++++.
T Consensus 89 i~~~t~gg~D~vid~-----~G~---~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 89 IKEITDGGVNFALES-----TGS---PEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp HHHHTTSCEEEEEEC-----SCC---HHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHcCCCCcEEEEc-----CCc---HHHHHHHHhcccCceEEEEE
Confidence 111234679999876 443 56778889999999997654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.59 E-value=1.4e-05 Score=65.87 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=68.0
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++..+++|++||=+|||. |.++..+++..|++|+++|.+++.++.+++. |.. .+... +-.+.. +.+..
T Consensus 19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga~---~~i~~-~~~~~~-~~~~~ 89 (166)
T d1llua2 19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GAS---LTVNA-RQEDPV-EAIQR 89 (166)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---EEEET-TTSCHH-HHHHH
T ss_pred HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Ccc---ccccc-cchhHH-HHHHH
Confidence 34667889999999999986 8888888888899999999999988887754 422 22222 111110 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+.+|.|++... ...++...++|+|+|++++.
T Consensus 90 ~~~g~~~~i~~~~~---------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 90 DIGGAHGVLVTAVS---------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp HHSSEEEEEECCSC---------HHHHHHHHTTEEEEEEEEEC
T ss_pred hhcCCccccccccc---------chHHHHHHHHhcCCcEEEEE
Confidence 11234455554321 34577788999999997654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.59 E-value=8.6e-05 Score=60.79 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=68.2
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCcc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~ 253 (381)
.++...++|+++||=+|||. |..+..+++..|++|++++.+++.++.+++. |.. .. . ++.+.+. ..+.
T Consensus 19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~----~~-~-~~~~~~~~~~~~ 88 (168)
T d1rjwa2 19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GAD----LV-V-NPLKEDAAKFMK 88 (168)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCS----EE-E-CTTTSCHHHHHH
T ss_pred HHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccc----ee-c-ccccchhhhhcc
Confidence 35567789999999999986 7777888888889999999999988887663 432 11 1 2222110 0000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
....+.+|.|++. .+ ...++...++|+|+|++++..
T Consensus 89 ~~~~~~~~~v~~~-----~~----~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 89 EKVGGVHAAVVTA-----VS----KPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp HHHSSEEEEEESS-----CC----HHHHHHHHHHEEEEEEEEECC
T ss_pred cccCCCceEEeec-----CC----HHHHHHHHHHhccCCceEecc
Confidence 1122444545443 21 456788899999999977653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.57 E-value=1.7e-05 Score=67.32 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=72.2
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC-Ccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT-NMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~-~l~ 253 (381)
++...+++|++||-+|||. |.++..+++..++ +|+++|.+++.++.|++. |. +.. - +..+.+.. .+.
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga----~~~-~-~~~~~~~~~~i~ 87 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF----EIA-D-LSLDTPLHEQIA 87 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC----EEE-E-TTSSSCHHHHHH
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc----cEE-E-eCCCcCHHHHHH
Confidence 5678899999999999998 6677777776555 899999999988888765 32 111 1 22221100 000
Q ss_pred c-cCCCcccEEEEchhhH-------hhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 E-LFLGNFSTVFICGMIE-------AVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~-~~~~~fD~Ivs~~~l~-------~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+ .....+|+++-.-..+ .+........++.+.++++|||++++.
T Consensus 88 ~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 88 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 0 1235689988642211 111112357899999999999997665
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00018 Score=59.33 Aligned_cols=104 Identities=21% Similarity=0.181 Sum_probs=71.2
Q ss_pred HHHHHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CC
Q 047022 175 VLIEKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TN 251 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~ 251 (381)
.+.+..++++|++||-.|+ | .|..+..+++..|++|++++-+++..+.+++. |.. .++ |+.+... +.
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~---~vi---~~~~~~~~~~ 88 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GAH---EVF---NHREVNYIDK 88 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEE---ETTSTTHHHH
T ss_pred HHHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccccc----Ccc---ccc---ccccccHHHH
Confidence 4556677899999999996 4 58899999998999999999998877777653 432 121 3322110 00
Q ss_pred c-cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 M-TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l-~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+ .......+|+|+.. ++ ...++...++|+|+|+++..
T Consensus 89 i~~~t~~~g~d~v~d~-----~g----~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 89 IKKYVGEKGIDIIIEM-----LA----NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHHHCTTCEEEEEES-----CH----HHHHHHHHHHEEEEEEEEEC
T ss_pred hhhhhccCCceEEeec-----cc----HHHHHHHHhccCCCCEEEEE
Confidence 0 00134679999986 32 34577788999999997654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.47 E-value=0.00024 Score=58.32 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=69.7
Q ss_pred HHHHcCCCCCCEEEEecC-C-chHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 176 LIEKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.++..+++++++||=+|| | .|.++..+++..+ .+|+++|.+++.++.+++. |.. .+... +-.+......
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~-~~~~~~~~~~ 90 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINA-SMQDPLAEIR 90 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEET-TTSCHHHHHH
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeecc-CCcCHHHHHH
Confidence 456778999999999997 4 4677777777656 6999999999988888765 322 22222 2111100000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+.||+|+.. .+. ...++...+.++|||++++.
T Consensus 91 ~~~~~~~~d~vid~-----~g~---~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 91 RITESKGVDAVIDL-----NNS---EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp HHTTTSCEEEEEES-----CCC---HHHHTTGGGGEEEEEEEEEC
T ss_pred HHhhcccchhhhcc-----ccc---chHHHhhhhhcccCCEEEEe
Confidence 00123669999986 332 55667788999999997654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.47 E-value=0.00016 Score=59.95 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=74.1
Q ss_pred HHHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc--
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-- 249 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-- 249 (381)
..+++...+++|++||=+|||. |.++..+++..|+ +|+.+|.+++-++.+++. |.. .+. +....+.
T Consensus 18 ~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~---~~i---~~~~~~~~~ 87 (174)
T d1e3ia2 18 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT---DCL---NPRELDKPV 87 (174)
T ss_dssp HHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEE---CGGGCSSCH
T ss_pred HHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC---ccc---CCccchhhh
Confidence 3456677889999999999997 8889999988786 799999999988887765 332 111 2211110
Q ss_pred CC-ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEEE
Q 047022 250 TN-MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCST 297 (381)
Q Consensus 250 ~~-l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i~ 297 (381)
.. ......+.+|+|+-. ++. +..++...+.|+|| |++++.
T Consensus 88 ~~~~~~~~~~G~d~vie~-----~G~---~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 88 QDVITELTAGGVDYSLDC-----AGT---AQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHHHHHHHTSCBSEEEES-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred hhhHhhhhcCCCcEEEEe-----ccc---chHHHHHHHHhhcCCeEEEec
Confidence 00 001124679999876 443 66788899999996 897664
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.45 E-value=0.00045 Score=63.61 Aligned_cols=170 Identities=11% Similarity=0.099 Sum_probs=99.7
Q ss_pred CEEEEecCCchHHHHHHHHh-----------------cCCEEEEEcCCHHHHHHHHHHHHHcCC-CCCe--EEEEecCcc
Q 047022 186 QEVLEIGCGWGTLAIEIVRQ-----------------TGCKYTGITLSELQLKYAEIKVKEAGL-QDTS--DYIFVITVN 245 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~-----------------~~~~v~gvDis~~~~~~a~~~~~~~gl-~~~i--~~~~~~d~~ 245 (381)
-+|.|+||..|..++.+... +..+|.--|+-.+=....-+.+....- ..++ ....+ .+.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpG-SFY 131 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG-SFY 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES-CSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCC-chh
Confidence 57999999999887543321 123455556544433332222211110 0111 11223 332
Q ss_pred ccCcCCccccCCCcccEEEEchhhHhhCh-------------------------------hcHHHHHHHHHhccccCceE
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIEAVGH-------------------------------DYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~~ 294 (381)
.-- ++.++.++++|..++|++.. +|+..+|+.=.+-|+|||++
T Consensus 132 ~rL------fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~m 205 (359)
T d1m6ex_ 132 GRL------FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRM 205 (359)
T ss_dssp SCC------SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEE
T ss_pred hhc------CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 222 56799999999999988742 25567888888999999997
Q ss_pred EEEcCCCCCCC-CCC----------------------chhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecc---
Q 047022 295 CSTVPDQCYDE-HSL----------------------GPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE--- 348 (381)
Q Consensus 295 ~i~~~~~~~~~-~~~----------------------~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~--- 348 (381)
+++........ ... ...-+..+.+|- +.|+.+|+...++++..|++..++.+.
T Consensus 206 vl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~-Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~ 284 (359)
T d1m6ex_ 206 VLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQ-YTPSPTEVEAEILKEGSFLIDHIEASEIYW 284 (359)
T ss_dssp EEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCC-BCCCSHHHHHHHHHTTTBCCEEEEEEEEET
T ss_pred EEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCcc-ccCCHHHHHHHhccCCCeeeeeeEeeeccc
Confidence 66543221111 100 001122333453 579999998888887789888776432
Q ss_pred -----------------hhHHHHHHHHHHHHH
Q 047022 349 -----------------THYYQKLRRWRQKFR 363 (381)
Q Consensus 349 -----------------~~y~~tl~~W~~~f~ 363 (381)
..++.++|.|.+.+.
T Consensus 285 ~~~~~~~~~~~d~~~~~~~~a~~~RA~~e~~l 316 (359)
T d1m6ex_ 285 SSCTKDGDGGGSVEEEGYNVARCMRAVAEPLL 316 (359)
T ss_dssp TCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 357889999987543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.30 E-value=0.00017 Score=59.97 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=72.4
Q ss_pred HHHHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+.+.-..++|++||-.|+ |-|.+++++++..|++|+++.-|++-.+.+++. |...-+ |+.+...+.
T Consensus 21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi------~~~~~~~~~ 90 (176)
T d1xa0a2 21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVL------AREDVMAER 90 (176)
T ss_dssp HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEE------ECC------
T ss_pred HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceee------ecchhHHHH
Confidence 34555566778999999986 458999999999999999999998888877754 432111 111111110
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
......+.+|+|+-. ++ ...+....++|+|||+++......
T Consensus 91 ~~~~~~~gvD~vid~-----vg----g~~~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 91 IRPLDKQRWAAAVDP-----VG----GRTLATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp ---CCSCCEEEEEEC-----ST----TTTHHHHHHTEEEEEEEEECSCCS
T ss_pred HHHhhccCcCEEEEc-----CC----chhHHHHHHHhCCCceEEEeeccc
Confidence 111234689999886 44 234677899999999987765443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.00016 Score=59.84 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred HHHHHcCCCCCCEEEEecCC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CC
Q 047022 175 VLIEKVKLVKGQEVLEIGCG--WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TN 251 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG--~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~ 251 (381)
.+.+..+++||++||=.|+| .|.++..+++..|++|++++.|++..+.+++. |.. +++ |+.+.+. +.
T Consensus 19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~---~vi---~~~~~d~~~~ 88 (179)
T d1qora2 19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVI---NYREEDLVER 88 (179)
T ss_dssp HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEE---ETTTSCHHHH
T ss_pred HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe---EEE---ECCCCCHHHH
Confidence 34455678999999999665 58889999998999999999999988888764 432 122 3322110 00
Q ss_pred cccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.+. ....+|+|+.. ++. +.+.....+|+|+|++++.
T Consensus 89 v~~~t~g~g~d~v~d~-----~g~----~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 89 LKEITGGKKVRVVYDS-----VGR----DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp HHHHTTTCCEEEEEEC-----SCG----GGHHHHHHTEEEEEEEEEC
T ss_pred HHHHhCCCCeEEEEeC-----ccH----HHHHHHHHHHhcCCeeeec
Confidence 0001 24679998886 332 2456778999999996654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.11 E-value=0.00021 Score=62.46 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=68.6
Q ss_pred HHHHHHcCCCCC--CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC--------CCCCeEEEEecC
Q 047022 174 SVLIEKVKLVKG--QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG--------LQDTSDYIFVIT 243 (381)
Q Consensus 174 ~~l~~~l~~~~~--~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~g--------l~~~i~~~~~~d 243 (381)
+.+.+.+.++++ .+|||.-||.|..+..++.. |++|+++|-++......+..+.... +..+++++.+ |
T Consensus 76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~-D 153 (250)
T d2oyra1 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA-S 153 (250)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES-C
T ss_pred hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecC-c
Confidence 356677776655 48999999999999999985 9999999999988776665544321 1237899999 8
Q ss_pred ccccCcCCccccCCCcccEEEEchhhHhh
Q 047022 244 VNCLKPTNMTELFLGNFSTVFICGMIEAV 272 (381)
Q Consensus 244 ~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~ 272 (381)
..+.-. -..++||+|+.--|+.+-
T Consensus 154 s~~~L~-----~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 154 SLTALT-----DITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp HHHHST-----TCSSCCSEEEECCCCCCC
T ss_pred HHHHHh-----ccCCCCCEEEECCCCccc
Confidence 766431 124679999998887654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.06 E-value=0.00087 Score=55.49 Aligned_cols=107 Identities=19% Similarity=0.227 Sum_probs=72.4
Q ss_pred HHHHHHcCCCCCCEEEEecCC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCG--WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG--~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+.+..++++|++||-.|++ -|..+..+++..|++|++++-+++..+.+++. |.. .++.. +-.+.....
T Consensus 19 ~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~---~vi~~-~~~~~~~~~ 90 (182)
T d1v3va2 19 FGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD---AAFNY-KTVNSLEEA 90 (182)
T ss_dssp HHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEET-TSCSCHHHH
T ss_pred HHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh---hhccc-ccccHHHHH
Confidence 355667788999999998885 47888999998999999999999877776654 322 22211 111110000
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.....+.+|+|+-. ++ .+.++.+.++|+|+|.+++.
T Consensus 91 ~~~~~~~Gvd~v~D~-----vG----~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 91 LKKASPDGYDCYFDN-----VG----GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHHHCTTCEEEEEES-----SC----HHHHHHHGGGEEEEEEEEEC
T ss_pred HHHhhcCCCceeEEe-----cC----chhhhhhhhhccCCCeEEee
Confidence 001134679999986 54 34678899999999997754
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.95 E-value=0.00081 Score=55.43 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=67.0
Q ss_pred HHHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc--
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-- 249 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-- 249 (381)
..+++..+++||++||=+|||. |.++..+++..|+ +|+++|.+++-++.+++. |.. .++ |+.+.+.
T Consensus 17 ~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga~---~~i---~~~~~d~~~ 86 (174)
T d1p0fa2 17 GAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT---ECL---NPKDYDKPI 86 (174)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS---EEE---CGGGCSSCH
T ss_pred HHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CCc---EEE---cCCCchhHH
Confidence 3455667899999999999986 6677777777664 899999999999888764 432 222 2222110
Q ss_pred -CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhcc-ccCceEEEE
Q 047022 250 -TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLL-AENGLSCST 297 (381)
Q Consensus 250 -~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~L-kpgG~~~i~ 297 (381)
+.......+.+|.|+-. ++. ...++.....+ +++|++++.
T Consensus 87 ~~~~~~~~~~G~d~vid~-----~g~---~~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 87 YEVICEKTNGGVDYAVEC-----AGR---IETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp HHHHHHHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHhcCCCCcEEEEc-----CCC---chHHHHHHHHHHHhcCceEEE
Confidence 00001123579998876 332 44555555555 456886653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.94 E-value=0.0018 Score=53.02 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=66.3
Q ss_pred CCCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 181 KLVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
.++||++||-+|||. |.++..+++..+ ..|+++|.+++.++.+++. |. ..+... +-.... .........
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~-~~~~~~-~~~~~~~~~ 99 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVDA-RRDPVK-QVMELTRGR 99 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEET-TSCHHH-HHHHHTTTC
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeecC-cccHHH-HHHHhhCCC
Confidence 367999999999986 667677777655 5889999999988887764 32 222222 111000 000011235
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.+|+|+.. ++. ...++...+.|+|+|++++..
T Consensus 100 g~d~vid~-----~g~---~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 100 GVNVAMDF-----VGS---QATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp CEEEEEES-----SCC---HHHHHHGGGGEEEEEEEEECC
T ss_pred CceEEEEe-----cCc---chHHHHHHHHHhCCCEEEEEe
Confidence 69998876 433 456788899999999977643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.92 E-value=0.001 Score=54.89 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=44.4
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHH
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIK 226 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~ 226 (381)
.+.+..++++|++||=+|||. |.++..+++..| .+|+++|.+++.++.|++.
T Consensus 20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 456677789999999999986 677778888777 5899999999999999887
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.89 E-value=0.0014 Score=53.95 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=69.8
Q ss_pred HHHHHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CC
Q 047022 175 VLIEKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TN 251 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~ 251 (381)
-+.+...+++|++||=.|+ | .|.++..+++..|+++++++-+++..+.+++. |.. .+. |+.+.+. +.
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga~---~vi---~~~~~~~~~~ 85 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GVE---YVG---DSRSVDFADE 85 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CCS---EEE---ETTCSTHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----ccc---ccc---cCCccCHHHH
Confidence 4456667899999999873 4 58999999998999999999888877776643 432 222 2222110 00
Q ss_pred ccc-cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTE-LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~-~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.+ .....||+|+.. ++ ...++.+.++|+|+|+++..
T Consensus 86 v~~~t~~~g~d~v~d~-----~g----~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 86 ILELTDGYGVDVVLNS-----LA----GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HHHHTTTCCEEEEEEC-----CC----THHHHHHHHTEEEEEEEEEC
T ss_pred HHHHhCCCCEEEEEec-----cc----chHHHHHHHHhcCCCEEEEE
Confidence 000 123679999986 43 23567778999999996654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.87 E-value=0.003 Score=51.51 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=70.6
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC--
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT-- 250 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~-- 250 (381)
.+.+..+++||++||=+|||. |.++..+++..| ..|+++|.+++-++.+++. |.. .++ |+.+....
T Consensus 19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~---~~i---~~~~~~~~~~ 88 (176)
T d2fzwa2 19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECI---NPQDFSKPIQ 88 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEE---CGGGCSSCHH
T ss_pred HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc---EEE---eCCchhhHHH
Confidence 445667899999999999974 677788888766 5899999999988888765 432 111 22211100
Q ss_pred -CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 251 -NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 251 -~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.....+.+|+|+-. ++. ...++.+..++++||.+++.
T Consensus 89 ~~~~~~~~~g~D~vid~-----~G~---~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 89 EVLIEMTDGGVDYSFEC-----IGN---VKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HHHHHHTTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEEE
T ss_pred HHHHHHcCCCCcEeeec-----CCC---HHHHHHHHHhhcCCceeEEE
Confidence 0001123679999986 443 56778889999999885543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.86 E-value=0.00034 Score=57.62 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=67.6
Q ss_pred HHHHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.++..+++||++||-.|+ | .|.++..+++..|++|++++.+++..+.+++. |.. . .. |+.+... ..
T Consensus 19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l----Ga~---~--~i-~~~~~~~-~~- 86 (171)
T d1iz0a2 19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GAE---E--AA-TYAEVPE-RA- 86 (171)
T ss_dssp HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TCS---E--EE-EGGGHHH-HH-
T ss_pred HHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc----ccc---e--ee-ehhhhhh-hh-
Confidence 356678899999999984 4 48889999998899999999998877777653 432 1 12 3333210 00
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+|+.. .++ .+....++|+|+|+++.
T Consensus 87 -~~~~g~D~v~d~-----~G~-----~~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 87 -KAWGGLDLVLEV-----RGK-----EVEESLGLLAHGGRLVY 118 (171)
T ss_dssp -HHTTSEEEEEEC-----SCT-----THHHHHTTEEEEEEEEE
T ss_pred -hccccccccccc-----cch-----hHHHHHHHHhcCCcEEE
Confidence 123579999875 332 24567889999999664
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.79 E-value=0.0012 Score=59.98 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCC------CCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEec
Q 047022 170 IRKVSVLIEKVKLV------KGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242 (381)
Q Consensus 170 ~~~~~~l~~~l~~~------~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~ 242 (381)
...++.+++.+.+. .+++|||||+|.|.++..+.+..+ .+++++|+++...+..++... .++++++.+
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~- 97 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKR- 97 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECS-
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeC-
Confidence 34556777776654 467899999999999999988633 489999999999999887753 257899998
Q ss_pred Cccc
Q 047022 243 TVNC 246 (381)
Q Consensus 243 d~~~ 246 (381)
|...
T Consensus 98 D~l~ 101 (322)
T d1i4wa_ 98 DPYD 101 (322)
T ss_dssp CTTC
T ss_pred chhh
Confidence 8754
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.55 E-value=0.0028 Score=51.76 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=69.4
Q ss_pred HHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+.+.-..+++.+||--|+ |-|.++.++|+..|++|+++.-|++..+.+++. |.. . ++ |+.+...+.+.
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad--~-vi---~~~~~~~~~~~ 84 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS--E-VI---SREDVYDGTLK 84 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS--E-EE---EHHHHCSSCCC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----ccc--c-eE---eccchhchhhh
Confidence 344434456778888775 458999999999999999999998887777665 432 1 11 22222111111
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
....+.+|+|+-. ++ ...+.+..++|+|+|++++..
T Consensus 85 ~~~~~gvd~vid~-----vg----g~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 85 ALSKQQWQGAVDP-----VG----GKQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp SSCCCCEEEEEES-----CC----THHHHHHHTTEEEEEEEEECC
T ss_pred cccCCCceEEEec-----Cc----HHHHHHHHHHhccCceEEEee
Confidence 2344679998876 54 346677899999999976643
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.39 E-value=0.0084 Score=48.84 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=66.3
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC---c
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK---P 249 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~---~ 249 (381)
.+.+..+++||++||=+|||. |..+..+++..+ .+|+++|.+++-.+.+++. |.. ..+ ++.+.+ .
T Consensus 19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~---~~i---~~~~~~~~~~ 88 (176)
T d2jhfa2 19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT---ECV---NPQDYKKPIQ 88 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEE---CGGGCSSCHH
T ss_pred HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCe---eEE---ecCCchhHHH
Confidence 456677899999999999975 455566666655 6999999999988888765 322 111 221111 0
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce-EEEE
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL-SCST 297 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~-~~i~ 297 (381)
........+.+|+|+-. .+. ...++.....++++|. +++.
T Consensus 89 ~~~~~~~~~G~D~vid~-----~G~---~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 89 EVLTEMSNGGVDFSFEV-----IGR---LDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp HHHHHHTTSCBSEEEEC-----SCC---HHHHHHHHHHBCTTTCEEEEC
T ss_pred HHHHHHhcCCCCEEEec-----CCc---hhHHHHHHHHHhcCCcceEEe
Confidence 00001233679999886 332 4556667778888754 4443
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.18 E-value=0.0055 Score=52.74 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVK 228 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~ 228 (381)
..++.+++... .+|+.|||.-||+|+.+..+.+ .|-+.+|+|++++.++.|++|+.
T Consensus 200 ~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~-~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHc
Confidence 44556676664 7899999999999999987766 69999999999999999999874
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.16 E-value=0.0044 Score=51.36 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=66.9
Q ss_pred HHHHHcCCCCCCEEEEe--cCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc--
Q 047022 175 VLIEKVKLVKGQEVLEI--GCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-- 249 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDi--GcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-- 249 (381)
.+.+...++||++||=+ |.| .|..++.+|+..|++|+++.-+++..+...+.+++.|...-+..... +..+...
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~-~~~~~~~~v 97 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQN-NSREFGPTI 97 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHH-HCGGGHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEecccc-chhHHHHHH
Confidence 44556678899988887 323 47888899998999998886555555555555555565311111111 1111100
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+.....+.+|+|+-. ++ ...+....++|+|+|+++..
T Consensus 98 ~~~~~~~g~~vdvv~D~-----vg----~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 98 KEWIKQSGGEAKLALNC-----VG----GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHHTCCEEEEEES-----SC----HHHHHHHHHTSCTTCEEEEC
T ss_pred HHHHhhccCCceEEEEC-----CC----cchhhhhhhhhcCCcEEEEE
Confidence 00000013568998865 54 23456678999999997653
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.88 E-value=0.0047 Score=54.96 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE 229 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~ 229 (381)
..++++++.. ..+|+.|||.-||+|+.+..+.+ .|.+.+|+|++++.++.|++|+..
T Consensus 238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~-lgR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHHHh
Confidence 3455666665 46899999999999999988776 699999999999999999988754
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.77 E-value=0.014 Score=50.45 Aligned_cols=121 Identities=12% Similarity=-0.033 Sum_probs=79.3
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHh-----cC------------------------------------CEEEEEc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-----TG------------------------------------CKYTGIT 214 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-----~~------------------------------------~~v~gvD 214 (381)
.+....-..+..++|--||+|++.+.++.. +| ..+.|.|
T Consensus 42 al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D 121 (249)
T d1o9ga_ 42 ALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKP 121 (249)
T ss_dssp HHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCH
T ss_pred HhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccc
Confidence 333333345668999999999999987652 11 2356888
Q ss_pred CCHHHHHHH---HHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh-Hhh------ChhcHHHHHHHH
Q 047022 215 LSELQLKYA---EIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI-EAV------GHDYMEELFSCC 284 (381)
Q Consensus 215 is~~~~~~a---~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l-~~~------~~~~~~~~l~~~ 284 (381)
+++.+++.| ++++...|+.+.|++... |+.+..+..- .......++||++--. +-+ +.+.+..++..+
T Consensus 122 ~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~-d~f~~~~~~~-~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l 199 (249)
T d1o9ga_ 122 SYLEAAQAARRLRERLTAEGGALPCAIRTA-DVFDPRALSA-VLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 199 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCEEEEEC-CTTCGGGHHH-HHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCceeeeeec-chhccCcchh-ccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHH
Confidence 888888887 468889999999999999 9866542100 0123567999996321 111 112356777788
Q ss_pred HhccccCceEEEEc
Q 047022 285 ESLLAENGLSCSTV 298 (381)
Q Consensus 285 ~~~LkpgG~~~i~~ 298 (381)
.+++......+++.
T Consensus 200 ~~~~p~~s~~~it~ 213 (249)
T d1o9ga_ 200 ASALPAHAVIAVTD 213 (249)
T ss_dssp HHHSCTTCEEEEEE
T ss_pred HccCCCCcEEEEeC
Confidence 88885544555554
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.73 E-value=0.042 Score=43.86 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=59.3
Q ss_pred CEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++|.=||+|. +.++..+.+ .|.+|++.|.+++.++.+++. ++ +..... +...+ ...|+|
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~-~g~~V~~~d~~~~~~~~a~~~----~~---~~~~~~-~~~~~----------~~~DiI 61 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVER----QL---VDEAGQ-DLSLL----------QTAKII 61 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT----TS---CSEEES-CGGGG----------TTCSEE
T ss_pred CEEEEEeecHHHHHHHHHHHH-CCCEEEEEECCchHHHHHHHh----hc---cceeee-ecccc----------cccccc
Confidence 3678899995 345566655 589999999999877766553 33 222222 33222 467999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+.. ++......+++++...|+++-.++-
T Consensus 62 ila-----vp~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 62 FLC-----TPIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp EEC-----SCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred ccc-----CcHhhhhhhhhhhhhhcccccceee
Confidence 876 5556678899999988888876543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.71 E-value=0.011 Score=51.55 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA 230 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~ 230 (381)
..+.++++... .+|+.|||.-||+|+.+..+.+ .|-+.+|+|+++...+.|++|+...
T Consensus 195 ~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~-lgR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 195 AVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred hHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 44556777663 6899999999999999888776 6999999999999999999998754
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.014 Score=47.86 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=63.5
Q ss_pred CCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
+++.+||-.|+ |.|..++++++..|++|+++.-+++..+.+++. |. ..++ |+.+.... .......+
T Consensus 30 ~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Ga---d~vi---~~~~~~~~--~~l~~~~~ 97 (177)
T d1o89a2 30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GA---SRVL---PRDEFAES--RPLEKQVW 97 (177)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TE---EEEE---EGGGSSSC--CSSCCCCE
T ss_pred CCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----cc---cccc---ccccHHHH--HHHHhhcC
Confidence 34457887665 468999999999999999999999988777654 32 1222 33322100 01234668
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|.|+-. ++ ...+....+.|+++|+++...
T Consensus 98 ~~vvD~-----Vg----g~~~~~~l~~l~~~Griv~~G 126 (177)
T d1o89a2 98 AGAIDT-----VG----DKVLAKVLAQMNYGGCVAACG 126 (177)
T ss_dssp EEEEES-----SC----HHHHHHHHHTEEEEEEEEECC
T ss_pred CeeEEE-----cc----hHHHHHHHHHhccccceEeec
Confidence 887643 54 346788999999999977653
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.65 E-value=0.045 Score=43.87 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=59.4
Q ss_pred EEEEecCCc--hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 187 EVLEIGCGW--GTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 187 ~VLDiGcG~--G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+|+=||||. |.++..+.+. +..+|+++|.+++.++.+++. +. +..... +.... .....|+|
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~-~~~~~--------~~~~~dlI 66 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTT-SIAKV--------EDFSPDFV 66 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEES-CGGGG--------GGTCCSEE
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhh-hhhhh--------hccccccc
Confidence 588899996 3455556554 346899999999988888765 32 222222 22222 12467999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
+.. ++......+++++...++++..+.
T Consensus 67 ila-----~p~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 67 MLS-----SPVRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp EEC-----SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ccc-----CCchhhhhhhhhhhcccccccccc
Confidence 887 555567888999999998886544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.63 E-value=0.12 Score=41.32 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=64.1
Q ss_pred HHHHHcCCCCCCEEEEecCCch-HHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc--C
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWG-TLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP--T 250 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G-~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~--~ 250 (381)
.+.+..++++|++||=+|||.+ ..+..+++.. +.+|+++|.+++-++.+++. |.. .++ |+.+... .
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~----GAd---~~i---n~~~~~~~~~ 88 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GAT---DFV---NPNDHSEPIS 88 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCC---EEE---CGGGCSSCHH
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc----CCc---EEE---cCCCcchhHH
Confidence 4456678999999999999984 4445555554 45899999999988887764 432 222 2222110 0
Q ss_pred Cc-cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 251 NM-TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 251 ~l-~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.. .....+.+|.|+-. ++. ...+......+++||..++
T Consensus 89 ~~~~~~~~~G~d~vid~-----~G~---~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 89 QVLSKMTNGGVDFSLEC-----VGN---VGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp HHHHHHHTSCBSEEEEC-----SCC---HHHHHHHHHTBCTTTCEEE
T ss_pred HHHHhhccCCcceeeee-----cCC---HHHHHHHHHHhhCCCccee
Confidence 00 00123569999876 443 4556667777777655433
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.40 E-value=0.0045 Score=50.23 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=69.9
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
+..+|+-||+|. |..++..|...|+.|+.+|.+++.++..+..... +++.... +-..+. ..-...|+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~-~~~~l~------~~~~~aDi 98 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYS-NSAEIE------TAVAEADL 98 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEEC-CHHHHH------HHHHTCSE
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----cceeehh-hhhhHH------HhhccCcE
Confidence 457999999996 8888888888999999999999988887776542 4666655 443332 11256899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
||+.-.+. +.+-+.-.-+++.+.+|||..++
T Consensus 99 vI~aalip--G~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 99 LIGAVLVP--GRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp EEECCCCT--TSSCCCCBCHHHHTTSCTTCEEE
T ss_pred EEEeeecC--CcccCeeecHHHHhhcCCCcEEE
Confidence 99875432 12223344577889999998855
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.88 E-value=0.042 Score=45.00 Aligned_cols=105 Identities=21% Similarity=0.260 Sum_probs=65.2
Q ss_pred HHHHHcCCCCC--CEEEEecC--CchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 175 VLIEKVKLVKG--QEVLEIGC--GWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 175 ~l~~~l~~~~~--~~VLDiGc--G~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
-+.+..++++| ++||-.|+ |.|.++.++|+..|+ .|++++.+++......+. .|.. .++ |+.+-..
T Consensus 19 ~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~gad---~vi---~~~~~~~ 89 (187)
T d1vj1a2 19 GVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGFD---AAV---NYKTGNV 89 (187)
T ss_dssp HHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCCS---EEE---ETTSSCH
T ss_pred HHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccce---EEe---eccchhH
Confidence 44566667776 78999883 469999999998786 577777776654443322 2322 111 3322110
Q ss_pred -CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 250 -TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 250 -~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.+.....+.+|+|+-. ++ ...++...++|+|+|+++..
T Consensus 90 ~~~~~~~~~~GvDvv~D~-----vG----g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 90 AEQLREACPGGVDVYFDN-----VG----GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHHHHHCTTCEEEEEES-----SC----HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHhccCceEEEec-----CC----chhHHHHhhhccccccEEEe
Confidence 00111123679999876 54 34577889999999997653
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.84 E-value=0.056 Score=49.29 Aligned_cols=90 Identities=8% Similarity=0.086 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--------GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--------~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~ 241 (381)
.+.+..+.+.+...+...|+|+|+|.|.++..+.+.. ..+++.++.|+...+.-++.+.. . .++.+. .
T Consensus 65 a~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--~-~~i~w~-~ 140 (365)
T d1zkda1 65 GLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--I-RNIHWH-D 140 (365)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--C-SSEEEE-S
T ss_pred HHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--c-ccceec-c
Confidence 3444555666665556689999999999998776541 34789999999876666555432 1 244433 3
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhhC
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVG 273 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~ 273 (381)
+..+++ ...-+|+|++.+..+|
T Consensus 141 -~~~~~~---------~~~g~iiaNE~fDAlP 162 (365)
T d1zkda1 141 -SFEDVP---------EGPAVILANEYFDVLP 162 (365)
T ss_dssp -SGGGSC---------CSSEEEEEESSGGGSC
T ss_pred -Chhhcc---------cCCeEEEecccCcccc
Confidence 455544 2235677777665554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.78 E-value=0.33 Score=36.80 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=54.9
Q ss_pred CEEEEecCCchHHHHHHHH---hcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 186 QEVLEIGCGWGTLAIEIVR---QTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~---~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++|+=+|+|. ++..+++ ..|..|+.+|.+++.++.+.+.. .+.+..+ |..+.. -+....-...|.
T Consensus 1 M~IvI~G~G~--~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~G-d~~~~~--~l~~~~i~~a~~ 68 (132)
T d1lssa_ 1 MYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVING-DCTKIK--TLEDAGIEDADM 68 (132)
T ss_dssp CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEES-CTTSHH--HHHHTTTTTCSE
T ss_pred CEEEEECCCH--HHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccC-cccchh--hhhhcChhhhhh
Confidence 3678888764 4444443 35889999999999888765541 3678888 876542 111122367899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAEN 291 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg 291 (381)
+++. .+++..........+.+.+.
T Consensus 69 vv~~-----t~~d~~N~~~~~~~k~~~~~ 92 (132)
T d1lssa_ 69 YIAV-----TGKEEVNLMSSLLAKSYGIN 92 (132)
T ss_dssp EEEC-----CSCHHHHHHHHHHHHHTTCC
T ss_pred hccc-----CCcHHHHHHHHHHHHHcCCc
Confidence 9885 33222333444455666666
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=93.68 E-value=0.18 Score=44.44 Aligned_cols=113 Identities=13% Similarity=0.120 Sum_probs=78.2
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC--CeEEEEecCccccCcCCcc--ccCCCccc
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD--TSDYIFVITVNCLKPTNMT--ELFLGNFS 261 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~--~i~~~~~~d~~~l~~~~l~--~~~~~~fD 261 (381)
..|+.+|||-=.-...+....+.++.=+|. |++++.-++.+...+... +..+... |.++--.+.|. .+..+.--
T Consensus 91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~-Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPI-DLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEEC-CTTSCHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecc-cccchHHHHHHhcCCCCCCCE
Confidence 467779999866665553224678888885 788888788887766543 4456666 76542111111 12234455
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++++-+++.+++.+....+++.+.+...||+.+++...+
T Consensus 169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 677788899999889999999999999999998887543
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.069 Score=37.14 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=41.4
Q ss_pred HHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHH
Q 047022 176 LIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIK 226 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~ 226 (381)
+.+....+++.+||-.|. |.|.+++++++..|++|+++.-|++..+.+++.
T Consensus 23 ~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~l 75 (77)
T d1o8ca2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL 75 (77)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH
T ss_pred HHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHC
Confidence 344455678899999876 458899999998999999999999988888753
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.94 E-value=0.13 Score=39.17 Aligned_cols=92 Identities=12% Similarity=0.135 Sum_probs=59.7
Q ss_pred CCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHh
Q 047022 193 CGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEA 271 (381)
Q Consensus 193 cG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~ 271 (381)
||+|..+..+++. .+..++.+|.+++..+..+.. .+.+..+ |..+.. .|....-.+.+.+++.
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--------~~~~i~G-d~~~~~--~L~~a~i~~A~~vi~~----- 69 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS--------GANFVHG-DPTRVS--DLEKANVRGARAVIVN----- 69 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--------TCEEEES-CTTSHH--HHHHTTCTTCSEEEEC-----
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--------Ccccccc-ccCCHH--HHHHhhhhcCcEEEEe-----
Confidence 5677888888887 455688899999877655432 4788889 876532 1212234678888875
Q ss_pred hChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 272 VGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 272 ~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+++......-...+.+.|...++....+
T Consensus 70 ~~~d~~n~~~~~~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 70 LESDSETIHCILGIRKIDESVRIIAEAER 98 (129)
T ss_dssp CSSHHHHHHHHHHHHHHCSSSCEEEECSS
T ss_pred ccchhhhHHHHHHHHHHCCCceEEEEEcC
Confidence 33333344455566778888877766543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=91.43 E-value=0.37 Score=38.28 Aligned_cols=100 Identities=12% Similarity=0.015 Sum_probs=57.7
Q ss_pred CEEEEecCCchH--HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 186 QEVLEIGCGWGT--LAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 186 ~~VLDiGcG~G~--~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
.+|-=||+|..+ ++..+++ .|.+|+.+|.++..++..++.-....................... ..-...|+|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIG----LAVKDADVI 76 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHH----HHHTTCSEE
T ss_pred CEEEEECccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhH----hHhcCCCEE
Confidence 478889999633 3344555 589999999999877766554210000001111111000000000 011568998
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
+.. ++......+++++...|+++-.++
T Consensus 77 ii~-----v~~~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 77 LIV-----VPAIHHASIAANIASYISEGQLII 103 (184)
T ss_dssp EEC-----SCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred EEE-----EchhHHHHHHHHhhhccCCCCEEE
Confidence 886 555567889999999999887644
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.44 Score=40.67 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=58.8
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc------
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE------ 254 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~------ 254 (381)
+++.||-.|++.| ..+..+++ .|++|+.++.+++.++.+.+.+...+...++.++.+ |..+.. ++..
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~-~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~-Dls~~~--~v~~~v~~~~ 84 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQ-QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRC-DLSNEE--DILSMFSAIR 84 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEEC-CTTCHH--HHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEc-cCCCHH--HHHHHHHHHH
Confidence 4678999998876 34445555 499999999999999998888888777667888899 887532 1000
Q ss_pred cCCCcccEEEEchh
Q 047022 255 LFLGNFSTVFICGM 268 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~ 268 (381)
-.-+..|++|.+..
T Consensus 85 ~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 85 SQHSGVDICINNAG 98 (257)
T ss_dssp HHHCCCSEEEECCC
T ss_pred HhcCCCCEEEeccc
Confidence 01267899887653
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.39 Score=37.32 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=58.4
Q ss_pred EEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+|+=+|+| ..+..+++. .+..++.+|.+++......+.... ..+.+..+ |..+.. -|....-+..|.|
T Consensus 5 HiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~G-d~~d~~--~L~~a~i~~a~~v 75 (153)
T d1id1a_ 5 HFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPG-DSNDSS--VLKKAGIDRCRAI 75 (153)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEES-CTTSHH--HHHHHTTTTCSEE
T ss_pred EEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEc-cCcchH--HHHHhccccCCEE
Confidence 56666665 444444443 588999999998754433333322 35888999 876642 1111233678888
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++. .+++......-...+-+.|...++....+
T Consensus 76 i~~-----~~~d~~n~~~~~~~r~~~~~~~iia~~~~ 107 (153)
T d1id1a_ 76 LAL-----SDNDADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp EEC-----SSCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred EEc-----cccHHHHHHHHHHHHHhCCCCceEEEEcC
Confidence 886 33332333444455666787776665543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=89.60 E-value=0.7 Score=40.07 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=49.6
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEE-EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKY-TGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v-~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
.+|||+-||-|++..-+-+. |.++ .++|+++...+..+.+. .-.+..+ |+.++..+ .-...|+++
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~-------~~~~~~~-Di~~~~~~-----~~~~~dll~ 66 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-------SAKLIKG-DISKISSD-----EFPKCDGII 66 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHC-------CSEEEES-CTTTSCGG-----GSCCCSEEE
T ss_pred CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-------CCCCccC-ChhhCCHh-----HcccccEEe
Confidence 37999999999998877664 7765 59999998777666553 2356778 99888743 225689888
Q ss_pred Ec
Q 047022 265 IC 266 (381)
Q Consensus 265 s~ 266 (381)
..
T Consensus 67 ~g 68 (324)
T d1dcta_ 67 GG 68 (324)
T ss_dssp EC
T ss_pred ec
Confidence 64
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=87.55 E-value=0.7 Score=42.14 Aligned_cols=52 Identities=8% Similarity=0.085 Sum_probs=43.5
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHh-c--CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQ-T--GCKYTGITLSELQLKYAEIKVKEAGL 232 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~-~--~~~v~gvDis~~~~~~a~~~~~~~gl 232 (381)
.++++..++||||-.|..+..+++. . ..+|+++++++...+..++++.....
T Consensus 209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 3567889999999999988877665 2 35899999999999999999887654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=87.55 E-value=0.73 Score=34.63 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=53.6
Q ss_pred EEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 187 EVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 187 ~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+++=+|+|. |..........|..|+.+|.+++.++.++.. ......+ |..+.. -+....-...|.|++
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~--------~~~~~~g-d~~~~~--~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY--------ATHAVIA-NATEEN--ELLSLGIRNFEYVIV 70 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT--------CSEEEEC-CTTCTT--HHHHHTGGGCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh--------CCcceee-ecccch--hhhccCCccccEEEE
Confidence 456677764 4333322223589999999999987766432 2456778 876543 111112256788777
Q ss_pred chhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 266 CGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 266 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
. +++.+-...+-...+.+.|...++...
T Consensus 71 ~-----~~~~~~~~~~~~~~~~~~~~~~iiar~ 98 (134)
T d2hmva1 71 A-----IGANIQASTLTTLLLKELDIPNIWVKA 98 (134)
T ss_dssp C-----CCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred E-----cCchHHhHHHHHHHHHHcCCCcEEeec
Confidence 5 443333344444444455666655443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.44 E-value=1.4 Score=37.00 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=57.8
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC-c-c--ccC
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN-M-T--ELF 256 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~-l-~--~~~ 256 (381)
.|+.+|--|++.| .++..++++ |++|+.++.+++.++...+.+...+ .++....+ |..+...-. + . ...
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~-Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVV-DCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEEC-CTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEe-eCCCHHHHHHHHHHHHHH
Confidence 4778888898876 455666664 9999999999999988888887655 47889999 987642100 0 0 012
Q ss_pred CCcccEEEEchh
Q 047022 257 LGNFSTVFICGM 268 (381)
Q Consensus 257 ~~~fD~Ivs~~~ 268 (381)
.+..|.++.+..
T Consensus 82 ~g~idilinnag 93 (244)
T d1yb1a_ 82 IGDVSILVNNAG 93 (244)
T ss_dssp TCCCSEEEECCC
T ss_pred cCCCceeEeecc
Confidence 367899887653
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=86.22 E-value=0.48 Score=38.32 Aligned_cols=104 Identities=11% Similarity=-0.029 Sum_probs=61.4
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe--c-------CccccCcC---
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV--I-------TVNCLKPT--- 250 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~--~-------d~~~l~~~--- 250 (381)
+..+||-||+|. |..+...|...|+.|+.+|+++..++..++.... .+++... . ...+++.+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~-----~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK-----FITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE-----ECCC-----------------------C
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcc-----eEEEeccccccccccccchhhcCHHHHH
Confidence 456999999997 7788888888999999999999877777664321 1111100 0 11111100
Q ss_pred ----CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 251 ----NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 251 ----~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.+. ..-...|+|++.-.+.-- .-+.-.=+++.+.+|||..++
T Consensus 103 ~~~~~l~-~~l~~aDlVI~talipG~--~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 103 KQAEAVL-KELVKTDIAITTALIPGK--PAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp CHHHHHH-HHHTTCSEEEECCCCTTS--CCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHH-HHHHhhhhheeeeecCCc--ccceeehHHHHHhcCCCcEEE
Confidence 000 001357998886544321 223334577889999998855
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=86.20 E-value=1 Score=39.20 Aligned_cols=68 Identities=9% Similarity=0.139 Sum_probs=50.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEE-EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKY-TGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v-~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+.+|||+-||-|+++..+-+ .|.++ .++|+++..++..+.+... . ..+ |+.++... ....+|+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~-aG~~~v~a~e~d~~a~~~~~~N~~~-----~---~~~-Di~~~~~~-----~~~~~Dl 74 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALES-CGAECVYSNEWDKYAQEVYEMNFGE-----K---PEG-DITQVNEK-----TIPDHDI 74 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHH-TTCEEEEEECCCHHHHHHHHHHHSC-----C---CBS-CGGGSCGG-----GSCCCSE
T ss_pred CCCeEEEECccccHHHHHHHH-CCCeEEEEEeCCHHHHHHHHHHCCC-----C---CcC-chhcCchh-----hcceeee
Confidence 568999999999999998766 47764 6699999988888777632 1 236 88777632 2246888
Q ss_pred EEEc
Q 047022 263 VFIC 266 (381)
Q Consensus 263 Ivs~ 266 (381)
++..
T Consensus 75 l~gg 78 (327)
T d2c7pa1 75 LCAG 78 (327)
T ss_dssp EEEE
T ss_pred eecc
Confidence 8863
|
| >d1ikta_ d.106.1.1 (A:) SCP2-like domain of MFE-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SCP-like superfamily: SCP-like family: Sterol carrier protein, SCP domain: SCP2-like domain of MFE-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.99 E-value=0.94 Score=33.42 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=40.5
Q ss_pred EEecCCeEEEecCCCCCCCCceEEEEeChHHHHHhhhcCCcchhHhhhcCceEeccchhhHHHH
Q 047022 12 FLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLNL 75 (381)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~ 75 (381)
+.+.||......+... ..|+++|++.++.+. ++ ..|.+-.-.|||.|...++||..-+..+
T Consensus 45 i~l~~g~~~~~~~~~~-~~~d~tit~~~~~~~-~i-~~G~~~~~~a~~~Gklki~Gd~~~~~~l 105 (115)
T d1ikta_ 45 IDLKSGSGKVYQGPAK-GAADTTIILSDEDFM-EV-VLGKLDPQKAFFSGRLKARGNIMLSQKL 105 (115)
T ss_dssp EEESSTTCEEEESSCS-SCCSEEEEEEHHHHH-HH-HTTSSCHHHHHHTTSSEEEESHHHHHHH
T ss_pred EEEECCceEEeccCCC-CCCCEEEEEeHHHHH-HH-HCCCCCHHHHHHCCCEEEECCHHHHHHH
Confidence 4455665443332221 247899998886665 33 5689999999999999999975444433
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=85.72 E-value=1.6 Score=36.88 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=56.8
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC-c-c--ccC
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN-M-T--ELF 256 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~-l-~--~~~ 256 (381)
.|+++|--|++.| ..+..++++ |++|+.+|.+++.++.+.+.+...+...++.+..+ |..+...-. + . ...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA-DVSDEAQVEAYVTATTER 80 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEEC-CTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEec-cCCCHHHHHHHHHHHHHH
Confidence 4678888898776 355666664 99999999999988888777766655557888888 886642000 0 0 001
Q ss_pred CCcccEEEEch
Q 047022 257 LGNFSTVFICG 267 (381)
Q Consensus 257 ~~~fD~Ivs~~ 267 (381)
-++.|++|.+.
T Consensus 81 ~G~iDiLVnnA 91 (258)
T d1iy8a_ 81 FGRIDGFFNNA 91 (258)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 26799988754
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=85.09 E-value=1.1 Score=36.15 Aligned_cols=85 Identities=11% Similarity=0.187 Sum_probs=48.9
Q ss_pred CEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH------HcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 186 QEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVK------EAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 186 ~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~------~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
.+|.-||||. |.....++.+.|.+|+..+.+++.++..++.-. ...+++++.+. . |..+.- .
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t-~-~l~~a~---------~ 76 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT-S-DVEKAY---------N 76 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEE-S-CHHHHH---------T
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccc-h-hhhhcc---------C
Confidence 3799999994 543332333246689999999988876654421 11233444432 2 433322 3
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHh
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCES 286 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~ 286 (381)
..|+|+.. +|......+++++..
T Consensus 77 ~ad~iiia-----vPs~~~~~~~~~~~~ 99 (189)
T d1n1ea2 77 GAEIILFV-----IPTQFLRGFFEKSGG 99 (189)
T ss_dssp TCSCEEEC-----SCHHHHHHHHHHHCH
T ss_pred CCCEEEEc-----CcHHHHHHHHHHHHh
Confidence 45888776 554445666666554
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=84.47 E-value=0.2 Score=39.29 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=54.3
Q ss_pred CEEEEecCCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 186 QEVLEIGCGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 186 ~~VLDiGcG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++|+=||+|. |. ++..+++ .|..|+.++.++....... ..+.......... . ...+ ...+.+|+|
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~-~-~~~~------~~~~~~D~i 67 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCK-QGHEVQGWLRVPQPYCSVN----LVETDGSIFNESL-T-ANDP------DFLATSDLL 67 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCSEEEEE----EECTTSCEEEEEE-E-ESCH------HHHHTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHH-CCCceEEEEcCHHHhhhhc----cccCCcccccccc-c-cchh------hhhcccceE
Confidence 4789999996 44 4444455 5899999998765222110 0111111110000 0 0111 012578999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.. +...+....++.+...++++..++..
T Consensus 68 ii~-----vka~~~~~~~~~l~~~~~~~~~Iv~~ 96 (167)
T d1ks9a2 68 LVT-----LKAWQVSDAVKSLASTLPVTTPILLI 96 (167)
T ss_dssp EEC-----SCGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred EEe-----ecccchHHHHHhhccccCcccEEeec
Confidence 986 54456788999999999988776554
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=83.92 E-value=1.9 Score=34.48 Aligned_cols=86 Identities=12% Similarity=-0.008 Sum_probs=53.5
Q ss_pred HHHHHcCC-CCCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 175 VLIEKVKL-VKGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 175 ~l~~~l~~-~~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.+.+.... -+|++||=.|++.| .++..+++ .|++|+.++.+++.++...+.+.... ++.+... |..+..
T Consensus 12 ~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~-d~~~~~-- 84 (191)
T d1luaa1 12 LVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAG-EGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAA-ETADDA-- 84 (191)
T ss_dssp HHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEE-ECCSHH--
T ss_pred HHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHh-hccchhhcccchHHHHHHHHHHHhcc---chhhhhh-hcccHH--
Confidence 44444432 26889999997654 34445555 49999999999988888777765542 3444555 544321
Q ss_pred CccccCCCcccEEEEchh
Q 047022 251 NMTELFLGNFSTVFICGM 268 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~ 268 (381)
.+. -.-+..|+++.+..
T Consensus 85 ~~~-~~~~~iDilin~Ag 101 (191)
T d1luaa1 85 SRA-EAVKGAHFVFTAGA 101 (191)
T ss_dssp HHH-HHTTTCSEEEECCC
T ss_pred HHH-HHhcCcCeeeecCc
Confidence 000 11267899998753
|
| >d2cfua1 d.106.1.3 (A:530-655) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SCP-like superfamily: SCP-like family: Alkylsulfatase C-terminal domain-like domain: Alkylsulfatase SdsA1 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.90 E-value=0.66 Score=34.81 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=40.4
Q ss_pred eEEEecCCeEEEecCCCCCCCCceEEEEeChHHHHHhhhcCCcchhHhhhcCceEeccchhhHHHHH
Q 047022 10 HSFLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLNLF 76 (381)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~ 76 (381)
..+.+.||.....-+..+ ..++++|++.... |.+++ .|.+.+.++++.|...++||...+..++
T Consensus 45 ~~l~l~ngvl~~~~~~~~-~~ad~tit~~~~~-l~~ll-~G~~~~~~a~~~g~l~i~Gd~~~~~~~~ 108 (126)
T d2cfua1 45 YLLELKNSHLNNLRGVQS-EDAGQTVSIDRAD-LNRLL-LKEVSAVRLVFEGKLKSSGNPLLLGQLF 108 (126)
T ss_dssp EEEEEETTEEEEEETCCC-TTCSEEEEECHHH-HHHHH-TTSSCHHHHHHTTSEEEEECTTHHHHHH
T ss_pred EEEEEeCCceecccCCCC-CCCCEEEEEcHHH-HHHHH-cCCCCHHHHHHcCCEEEeCCHHHHHHHH
Confidence 345666777654433221 2356777665443 43444 5999999999999999998654443333
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=83.07 E-value=2.5 Score=35.64 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=56.0
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC-----Ccccc
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT-----NMTEL 255 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~-----~l~~~ 255 (381)
+|++||=.|++.| ..+..+++ .|++|+.++.+++.++.+.+.+...+. ++.+..+ |..+...- .+...
T Consensus 5 ~gK~alITGas~GIG~aia~~la~-~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~-D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAG-LGARVYTCSRNEKELDECLEIWREKGL--NVEGSVC-DLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEEC-CTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEe-ecCCHHHHHHHHHHHHHH
Confidence 5789999999765 34555566 499999999999998888888877663 5788888 88654200 00112
Q ss_pred CCCcccEEEEch
Q 047022 256 FLGNFSTVFICG 267 (381)
Q Consensus 256 ~~~~fD~Ivs~~ 267 (381)
..+..|+++++.
T Consensus 81 ~~g~idilinna 92 (258)
T d1ae1a_ 81 FDGKLNILVNNA 92 (258)
T ss_dssp TTSCCCEEEECC
T ss_pred hCCCcEEEeccc
Confidence 235788888754
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=81.69 E-value=2.6 Score=35.51 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=55.0
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC-Cc-c--ccC
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT-NM-T--ELF 256 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~-~l-~--~~~ 256 (381)
.|+++|-.|++.| ..+..+++ .|++|+.+|.+++.++.+.+.+...+ .++....+ |..+...- .+ . .-.
T Consensus 4 ~gK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~-Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAE-EGTAIALLDMNREALEKAEASVREKG--VEARSYVC-DVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEEC-CTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEc-cCCCHHHHHHHHHHHHHH
Confidence 5778898888765 34555666 49999999999999998888887655 36888888 88653200 00 0 001
Q ss_pred CCcccEEEEch
Q 047022 257 LGNFSTVFICG 267 (381)
Q Consensus 257 ~~~fD~Ivs~~ 267 (381)
-+..|.+|.+.
T Consensus 80 ~g~iDilVnna 90 (260)
T d1zema1 80 FGKIDFLFNNA 90 (260)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCeehhhh
Confidence 26799988754
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.35 E-value=1.7 Score=35.01 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=63.8
Q ss_pred CEEEEecCCch--HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-------CCC--------------CCeEEEEec
Q 047022 186 QEVLEIGCGWG--TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-------GLQ--------------DTSDYIFVI 242 (381)
Q Consensus 186 ~~VLDiGcG~G--~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-------gl~--------------~~i~~~~~~ 242 (381)
.+|--||+|+= +++..++. .|.+|+.+|.+++.++.+++++... +.. .++.+. .
T Consensus 5 kkvaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~- 81 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T- 81 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S-
T ss_pred EEEEEECcCHHHHHHHHHHHh-CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c-
Confidence 47889999973 34445555 5999999999999999888776431 221 012211 1
Q ss_pred CccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 243 TVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 243 d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+.+. ....|+|+-. +.|-+ +-..++|+++.+.++|+..+.-++..
T Consensus 82 d~~~a---------~~~ad~ViEa-v~E~l--~~K~~v~~~l~~~~~~~~ilasnTS~ 127 (192)
T d1f0ya2 82 DAASV---------VHSTDLVVEA-IVENL--KVKNELFKRLDKFAAEHTIFASNTSS 127 (192)
T ss_dssp CHHHH---------TTSCSEEEEC-CCSCH--HHHHHHHHHHTTTSCTTCEEEECCSS
T ss_pred hhHhh---------hcccceehhh-cccch--hHHHHHHHHHhhhcccCceeeccCcc
Confidence 22221 1456888765 22222 23568999999999999877665543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.25 E-value=1.9 Score=36.23 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=54.9
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC-Cc-cc--cC
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT-NM-TE--LF 256 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~-~l-~~--~~ 256 (381)
.|+.+|=-|++.| ..+..+++ .|++|+.++.+++.++.+.+.+....-..++.+..+ |..+...- .+ .. ..
T Consensus 2 ~GKvalITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~-Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLL-KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQC-DVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEEC-CTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEe-ecCCHHHHHHHHHHHHHH
Confidence 4678888898765 34444555 499999999999888877776654433347888888 88764200 00 00 01
Q ss_pred CCcccEEEEchhh
Q 047022 257 LGNFSTVFICGMI 269 (381)
Q Consensus 257 ~~~fD~Ivs~~~l 269 (381)
-++.|++|.+...
T Consensus 80 ~G~iDilVnnAg~ 92 (254)
T d2gdza1 80 FGRLDILVNNAGV 92 (254)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCcCeecccccc
Confidence 2679999986643
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.19 E-value=2.4 Score=36.05 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=56.7
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcC-Cc-cc--c
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPT-NM-TE--L 255 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~-~l-~~--~ 255 (381)
.|+++|=-|++.| ..+..+++ .|++|+.+|.+++.++.+.+.+...+.. .++.+..+ |..+...- .+ .. .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~-Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAK-EGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVA-DVTEASGQDDIINTTLA 80 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEEC-CTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEe-eCCCHHHHHHHHHHHHH
Confidence 4778888898776 34555566 4999999999999998888888776653 46888999 88664200 00 00 0
Q ss_pred CCCcccEEEEch
Q 047022 256 FLGNFSTVFICG 267 (381)
Q Consensus 256 ~~~~fD~Ivs~~ 267 (381)
.-++.|++|.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 125789999764
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=80.37 E-value=3.1 Score=35.00 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=55.4
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC-C----cccc
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT-N----MTEL 255 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~-~----l~~~ 255 (381)
.|+++|--|++.| ..+..+++ .|++|+.+|.+++.++.+.+.+...+ .++.+..+ |..+...- . ....
T Consensus 7 ~GK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~-Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELAS-LGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVC-DLSSRSERQELMNTVANH 82 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEEC-CTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEe-eCCCHHHHHHHHHHHHHH
Confidence 5788998898765 34555565 49999999999999988888887765 36788888 88653200 0 0001
Q ss_pred CCCcccEEEEchh
Q 047022 256 FLGNFSTVFICGM 268 (381)
Q Consensus 256 ~~~~fD~Ivs~~~ 268 (381)
..++.|+++.+..
T Consensus 83 ~~~~idilvnnAG 95 (259)
T d2ae2a_ 83 FHGKLNILVNNAG 95 (259)
T ss_dssp TTTCCCEEEECCC
T ss_pred hCCCceEEEECCc
Confidence 1247899998653
|