Citrus Sinensis ID: 047051

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLCTRA
Secondary Structure (PSIPRED)
cccEEEEEEEEEcccHHHHHHHHHHccccccccccccccEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEEEccccEEEEEEEEcccccccEEEEEEEEEEEEcccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcEEEEcccHHHHHHHHcccHHHHHHHHccccccEEEEEEcccccccEEEEEcccccccccEEEEEEEEEcHHccEEEEEEEEccccHHHHEEEEEEEEEEEcccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEccc
Coil and Loop (DISEMBL)
MVLGSIVGEYKSPIAVERLWKALICDahnfmpkalpQVISSIdllegdggvgtikkFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADvtftsssdgdcFAKLKIEYESlgdsllseedVRNIKQGILTMVKAAERFLLanpqclctra
Flexible Loop (DISEMBL)
MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFtsssdgdcFAKLKIEYESlgdsllseedVRNIKQGILTMVKAAERFllanpqclctra
Low Complexity Region (SEG)
MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLCTRA
Disordered region (IsUnstruct)
****SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC***
Disordered Region (DISOPRED)
***GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLCT**
Disordered Region (DISEMBL)
MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLCTRA
Disordered Region (DISPRO)
*VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLCTR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLCTRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
P43177	160	Major pollen allergen Bet	N/A	no	0.896	0.918	0.398	1e-25
P43180	160	Major pollen allergen Bet	N/A	no	0.896	0.918	0.391	4e-25
P43185	160	Major pollen allergen Bet	N/A	no	0.896	0.918	0.385	1e-24
O50001	160	Major allergen Pru ar 1 O	N/A	no	0.914	0.937	0.384	1e-24
P15494	160	Major pollen allergen Bet	N/A	no	0.896	0.918	0.391	2e-24
P43186	160	Major pollen allergen Bet	N/A	no	0.896	0.918	0.385	2e-24
P43183	160	Major pollen allergen Bet	N/A	no	0.896	0.918	0.378	1e-23
P43179	160	Major pollen allergen Bet	N/A	no	0.896	0.918	0.378	1e-23
P43178	160	Major pollen allergen Bet	N/A	no	0.896	0.918	0.371	3e-23
P43176	160	Major pollen allergen Bet	N/A	no	0.896	0.918	0.371	3e-23

>sp|P43177|BEV1D_BETPN Major pollen allergen Bet v 1-D/H OS=Betula pendula GN=BETV1D PE=1 SV=2

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 1/148 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N +PK  PQ ISS++ +EG+GG GTIKK NF E    F+Y
Sbjct: 9   ETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFP-FKY 67

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG C  K+  +Y + G+ 
Sbjct: 68  VKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNH 127

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E V+  K+   T+++A E +LLA+
Sbjct: 128 EVKAEQVKASKEMGETLLRAVESYLLAH 155

May be a general steroid carrier protein.
Betula pendula (taxid: 3505)

>sp|P43180|BEV1G_BETPN Major pollen allergen Bet v 1-G OS=Betula pendula GN=BETV1G PE=1 SV=2

 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 1/148 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I +  N +PK  PQ ISS++ +EG+GG GTIKK NF E    F+Y
Sbjct: 9   ETTSVIPAARLFKAFILEGDNLIPKVAPQAISSVENIEGNGGPGTIKKINFPEGFP-FKY 67

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG C  K+  +Y + G+ 
Sbjct: 68  VKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNH 127

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E V+  K+   T+++A E +LLA+
Sbjct: 128 EVKAEQVKASKEMGETLLRAVESYLLAH 155

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P43185|BEV1L_BETPN Major pollen allergen Bet v 1-L OS=Betula pendula GN=BETV1L PE=1 SV=2

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 1/148 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   R++KA I D    +PK  PQ ISS++ +EG+GG GTIKK NF E    F+Y
Sbjct: 9   EATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFP-FKY 67

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG C  K+  +Y + G+ 
Sbjct: 68  VKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNH 127

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E V+  K+   T+++A E +LLA+
Sbjct: 128 EVKAEQVKASKEMGETLLRAVESYLLAH 155

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|O50001|PRU1_PRUAR Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 84/151 (55%), Gaps = 1/151 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E+ S I  E+L+KA I DA N +PK  P  +   ++LEGDGGVGTIKK  F E   ++ Y
Sbjct: 9   EFTSVIPPEKLFKAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFGEG-SQYAY 67

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VK RV+ +D +N  + Y+++EG  L   + +   D+   +S DG    K    Y + GD 
Sbjct: 68  VKHRVDGIDKDNLSYSYTLIEGDALSDVIENIAYDIKLVASPDGGSIVKTTSHYHTKGDV 127

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQC 159
            + EE V+  K+    + K  E +LLANP  
Sbjct: 128 EIKEEQVKAGKEKAAGLFKLVEAYLLANPDA 158

Prunus armeniaca (taxid: 36596)

>sp|P15494|BEV1A_BETPN Major pollen allergen Bet v 1-A OS=Betula pendula GN=BETVIA PE=1 SV=2

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N  PK  PQ ISS++ +EG+GG GTIKK +F E    F+Y
Sbjct: 9   ETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 67

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG    K+  +Y + GD 
Sbjct: 68  VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDH 127

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E V+  K+   T+++A E +LLA+
Sbjct: 128 EVKAEQVKASKEMGETLLRAVESYLLAH 155

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P43186|BEV1M_BETPN Major pollen allergen Bet v 1-M/N OS=Betula pendula GN=BETV1M PE=1 SV=2

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 88/148 (59%), Gaps = 1/148 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N +PK  PQ ISS++ +EG+GG GTIKK  F E    F+Y
Sbjct: 9   ETTSVIPAARLFKAFILDGDNLIPKVAPQAISSVENIEGNGGPGTIKKITFPEG-SPFKY 67

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VK+RV+ +D+ N  + YS++EGG LG  +     ++   ++ DG    K+  +Y + GD 
Sbjct: 68  VKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDH 127

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E ++ IK+    +++A E +LLA+
Sbjct: 128 EMKAEHMKAIKEKGEALLRAVESYLLAH 155

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P43183|BEV1J_BETPN Major pollen allergen Bet v 1-J OS=Betula pendula GN=BETV1J PE=1 SV=2

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 1/148 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N  PK  PQ ISS++ +EG+GG GTIKK +F E    F+Y
Sbjct: 9   EATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 67

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ +G    K+  +Y + GD 
Sbjct: 68  VKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDH 127

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E ++  K+   T+++A E +LLA+
Sbjct: 128 EVKAEQIKASKEMGETLLRAVESYLLAH 155

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P43179|BEV1F_BETPN Major pollen allergen Bet v 1-F/I OS=Betula pendula GN=BETV1F PE=1 SV=2

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 1/148 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N  PK  PQ ISS++ +EG+GG GTIKK +F E    F+Y
Sbjct: 9   EATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 67

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ +G    K+  +Y + GD 
Sbjct: 68  VKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDH 127

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E ++  K+   T+++A E +LLA+
Sbjct: 128 EVKAEQIKASKEMGETLLRAVESYLLAH 155

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P43178|BEV1E_BETPN Major pollen allergen Bet v 1-E OS=Betula pendula GN=BETV1E PE=1 SV=2

 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 1/148 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N  PK  PQ ISS++ +EG+GG GTIKK +F E +  F+Y
Sbjct: 9   EATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGIP-FKY 67

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VK RV+ +D+ N  + YS++EGG +G  +     ++   ++ +G    K+  +Y + GD 
Sbjct: 68  VKGRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDH 127

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E ++  K+   T+++A E +LLA+
Sbjct: 128 EVKAEQIKASKEMGETLLRAVESYLLAH 155

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P43176|BEV1C_BETPN Major pollen allergen Bet v 1-C OS=Betula pendula GN=BETV1C PE=1 SV=2

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 1/148 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I +    +PK  PQ ISS++ +EG+GG GTIKK  F E    F+Y
Sbjct: 9   ETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEG-SPFKY 67

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VK+RV+ +D+ N  + YS++EGG LG  +     ++   ++ DG    K+  +Y + GD 
Sbjct: 68  VKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDQ 127

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E ++ IK+    +++A E +LLA+
Sbjct: 128 EMKAEHMKAIKEKGEALLRAVESYLLAH 155

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
224076763	162	predicted protein [Populus trichocarpa]	0.969	0.981	0.587	2e-53
224076771	162	predicted protein [Populus trichocarpa]	0.957	0.969	0.582	2e-52
224076756	162	predicted protein [Populus trichocarpa]	0.957	0.969	0.575	9e-52
255551881	133	Major pollen allergen Bet v 1-D/H, putat	0.780	0.962	0.7	4e-46
116791230	161	unknown [Picea sitchensis]	0.981	1.0	0.428	2e-33
116782190	161	unknown [Picea sitchensis]	0.981	1.0	0.409	2e-32
32165476	161	PR10 protein [Pinus monticola]	0.981	1.0	0.416	6e-32
32165478	161	PR10 protein [Pinus monticola]	0.981	1.0	0.416	7e-32
32165474	161	PR10 protein [Pinus monticola]	0.981	1.0	0.403	9e-32
32165472	161	PR10 protein [Pinus monticola]	0.981	1.0	0.409	1e-31

>gi|224076763|ref|XP_002304993.1| predicted protein [Populus trichocarpa] gi|222847957|gb|EEE85504.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/160 (58%), Positives = 125/160 (78%), Gaps = 1/160 (0%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNF 59
           MV G+I+ EY S +  +RLWKA  CD HN +PK LP +ISSID+LEGDG GVG++KKFNF
Sbjct: 1   MVSGTILAEYTSAVPADRLWKASFCDGHNLIPKLLPGIISSIDILEGDGAGVGSVKKFNF 60

Query: 60  TEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLK 119
           T+ +K++ YVKDRVE+MD ENH+ RYS +EGG++G KV SY  +++ TS+S+G C +K+K
Sbjct: 61  TDVIKDYSYVKDRVEVMDQENHIVRYSTLEGGVIGVKVKSYSVEISLTSTSEGGCLSKMK 120

Query: 120 IEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQC 159
           IEYES+GDSLLSEED  +++QGI  MVKA +  L+ NP  
Sbjct: 121 IEYESIGDSLLSEEDANDMQQGIFAMVKAIDAHLVENPTA 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076771|ref|XP_002304994.1| predicted protein [Populus trichocarpa] gi|222847958|gb|EEE85505.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 92/158 (58%), Positives = 124/158 (78%), Gaps = 1/158 (0%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGG-VGTIKKFNF 59
           MV G+I+ E+ S +  +RLWKA  CD HN +PK LP +ISSID+LEGDG  VG++KKFNF
Sbjct: 1   MVSGTILAEHTSAVPADRLWKASFCDGHNLIPKLLPGIISSIDILEGDGAAVGSVKKFNF 60

Query: 60  TEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLK 119
           T+ +K++ YVKDRVE+MD ENH+ RYS +EGG++G KV SY  +++ TS+S+G C +K+K
Sbjct: 61  TDVIKDYSYVKDRVEVMDQENHIVRYSTLEGGVIGVKVKSYSVEISLTSTSEGGCLSKMK 120

Query: 120 IEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANP 157
           IEYES+GDSLLSEED  +++QGI  MVKA +  L+ NP
Sbjct: 121 IEYESIGDSLLSEEDANDMQQGIFAMVKAVDAHLVENP 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076756|ref|XP_002304992.1| predicted protein [Populus trichocarpa] gi|222847956|gb|EEE85503.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 124/158 (78%), Gaps = 1/158 (0%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGG-VGTIKKFNF 59
           MV G+I+ E+ S +  +RLWKA  CD HN +PK LP +ISSID+LEGDG  VG++KKFNF
Sbjct: 1   MVSGTILAEHTSAVPADRLWKASFCDGHNLIPKLLPGIISSIDILEGDGAAVGSVKKFNF 60

Query: 60  TEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLK 119
           T+ +K++ YVKDRVE+MD ENH+ RYS +EGG++G KV SY  +++ TS+++G C +K+K
Sbjct: 61  TDVIKDYSYVKDRVEVMDQENHIVRYSTLEGGVIGVKVKSYSVEISLTSTNEGGCLSKMK 120

Query: 120 IEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANP 157
           IEYES+GDSLLSEED  +++QGI  MVKA +  L+ NP
Sbjct: 121 IEYESIGDSLLSEEDANDMQQGIFAMVKAIDAHLVENP 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551881|ref|XP_002516986.1| Major pollen allergen Bet v 1-D/H, putative [Ricinus communis] gi|223544074|gb|EEF45600.1| Major pollen allergen Bet v 1-D/H, putative [Ricinus communis]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 108/130 (83%), Gaps = 2/130 (1%)

Query: 31  MPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90
           MPK LP +ISSID+LEGDGGVGTIKKFNFT AVKE  YVKDRVE+MD EN +F YSIVEG
Sbjct: 1   MPKLLPGIISSIDILEGDGGVGTIKKFNFTNAVKECSYVKDRVEVMDEENRIFTYSIVEG 60

Query: 91  GILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG--DSLLSEEDVRNIKQGILTMVKA 148
           GILG KV SY+A+V+FTS+++G C AKLKI+YES+   + LLSEED++NIK+G L MVK 
Sbjct: 61  GILGLKVKSYIAEVSFTSTNEGGCLAKLKIQYESMSHRNDLLSEEDIKNIKKGFLAMVKV 120

Query: 149 AERFLLANPQ 158
            + FLLANP 
Sbjct: 121 VDAFLLANPS 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116791230|gb|ABK25903.1| unknown [Picea sitchensis]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 103/161 (63%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT 60
           MV G+ + E    +   RLW A+  D+HN +PK LP++ +S+ LL+GDGGVGTIK+ NFT
Sbjct: 1   MVSGTAITEDVCQVEARRLWNAMSKDSHNLLPKVLPEIFASVTLLQGDGGVGTIKQLNFT 60

Query: 61  EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKI 120
            A K+F +VK+RV+ +D E  V++Y+ +EGG LG KV++   +V F    +G C A    
Sbjct: 61  PANKDFSFVKERVDEIDEEKMVYKYTTIEGGSLGEKVSAASFEVKFVPRKEGGCVASWIC 120

Query: 121 EYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC 161
            YE+L  + L E  V+ IK+  + M+K  E++LL+NP   C
Sbjct: 121 NYETLPGAQLDEGKVKEIKENSIAMLKKIEQYLLSNPNLYC 161

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782190|gb|ABK22402.1| unknown [Picea sitchensis]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 103/161 (63%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT 60
           MV G+ + E    +  +RLW A+  D+HN +PKALP++ +S+ LL+GDGGVGTIK+ NFT
Sbjct: 1   MVSGTAITEDVCQVEAKRLWNAISKDSHNLLPKALPEIFASVTLLQGDGGVGTIKQLNFT 60

Query: 61  EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKI 120
            A K+F ++K+RV+ +D E  V++Y+ +EGG LG K+++   +V      +G C A    
Sbjct: 61  PANKDFSFIKERVDEIDEEKMVYKYTTIEGGSLGEKLSAASFEVKLVPRKEGGCVASWIC 120

Query: 121 EYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC 161
            YE+L  + L E   + IK+  + M+K  E++LL+NP   C
Sbjct: 121 NYETLPGAQLDEGKTKEIKENSIAMLKKIEQYLLSNPNLYC 161

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32165476|gb|AAL49999.1| PR10 protein [Pinus monticola]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 98/161 (60%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT 60
           MV G+   E    +   RLW A   D+HNF+PK LP+V +S+ LL+GDGGVGT+K+ NFT
Sbjct: 1   MVSGTSSTEEVVQVEARRLWNATTKDSHNFLPKVLPEVFTSVTLLQGDGGVGTVKQLNFT 60

Query: 61  EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKI 120
              K+F ++K+RV+ +D EN V++Y+ +EGG LG K++S   +V      +G C AK   
Sbjct: 61  PGKKDFSFIKERVDELDEENFVYKYTAIEGGPLGKKLSSACFEVKLVPRKEGGCVAKWTC 120

Query: 121 EYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC 161
            YE+L      E   + IK+    M+K  E++LL+NP   C
Sbjct: 121 NYETLPGVQPDEGKFKEIKEDSFGMLKKVEQYLLSNPNLYC 161

Source: Pinus monticola

Species: Pinus monticola

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32165478|gb|AAL50000.1| PR10 protein [Pinus monticola]

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 98/161 (60%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT 60
           MV G+   E    +   RLW A   D+HNF+PK LP+V +S+ LL+GDGGVGT+K+ NFT
Sbjct: 1   MVSGTSSTEEVVQVEARRLWNATAKDSHNFLPKVLPEVFTSVTLLQGDGGVGTVKQLNFT 60

Query: 61  EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKI 120
              K+F ++K+RV+ +D EN V++Y+ +EGG LG K++S   +V      +G C AK   
Sbjct: 61  PGKKDFSFIKERVDELDEENFVYKYTAIEGGPLGKKLSSACFEVKLVPRKEGGCVAKWTC 120

Query: 121 EYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC 161
            YE+L      E   + IK+    M+K  E++LL+NP   C
Sbjct: 121 NYETLPGVQPDEGKFKEIKEDSFGMLKKVEQYLLSNPNLYC 161

Source: Pinus monticola

Species: Pinus monticola

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32165474|gb|AAL49998.1| PR10 protein [Pinus monticola]

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 99/161 (61%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT 60
           MV G+   E    +   RLW A   D+HNF+PK LP+V +S+ LL+GDGGVGT+K+ NFT
Sbjct: 1   MVSGTSTTEEVVQVEARRLWNATTKDSHNFLPKVLPEVFTSVTLLQGDGGVGTVKQLNFT 60

Query: 61  EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKI 120
              K+F ++K+RV+ +D EN V++Y+ +EGG LG K++S   +V      +G C A+   
Sbjct: 61  PGKKDFSFIKERVDELDEENFVYKYTAIEGGPLGKKLSSACFEVKLVPRKEGGCVARWTC 120

Query: 121 EYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC 161
            YE+L      E  ++ +K+    M+K  E++LL+NP   C
Sbjct: 121 NYETLPGVQPDEGKLKEMKEDSFGMLKKVEQYLLSNPNLYC 161

Source: Pinus monticola

Species: Pinus monticola

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32165472|gb|AAL49997.1| PR10 protein [Pinus monticola]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 98/161 (60%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT 60
           MV G+   E    +   RLW A   D+HNF+PK LP+V +S+ LL+GDGGVGT+K+ NFT
Sbjct: 1   MVSGTSSTEEVVQVEARRLWNATTKDSHNFLPKVLPEVFTSVTLLQGDGGVGTVKQLNFT 60

Query: 61  EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKI 120
              K+F ++K+RV+ +D EN V++Y+ +EGG LG K++S   +V      +G C A+   
Sbjct: 61  PGKKDFSFIKERVDELDEENFVYKYTAIEGGPLGKKLSSACFEVKLVPRKEGGCVARWTC 120

Query: 121 EYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC 161
            YE+L      E   + IK+    M+K  E++LL+NP   C
Sbjct: 121 NYETLPGVQPDEGKFKEIKEDSFGMLKKVEQYLLSNPNLYC 161

Source: Pinus monticola

Species: Pinus monticola

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2199932	155	MLP423 "MLP-like protein 423"	0.841	0.890	0.299	6.6e-10
TAIR|locus:2143804	164	AT5G28000 "AT5G28000" [Arabido	0.847	0.847	0.255	1.6e-08
TAIR|locus:2143809	166	AT5G28010 "AT5G28010" [Arabido	0.847	0.837	0.241	3.3e-08
TAIR|locus:2013920	159	AT1G70880 "AT1G70880" [Arabido	0.731	0.754	0.299	4.8e-07
TAIR|locus:2006832	153	AT1G14960 "AT1G14960" [Arabido	0.841	0.901	0.270	7.8e-07
TAIR|locus:2013950	158	MLP43 "AT1G70890" [Arabidopsis	0.890	0.924	0.237	2.2e-06
TAIR|locus:2013930	316	MLP34 "AT1G70850" [Arabidopsis	0.719	0.373	0.288	4.3e-06
TAIR|locus:2013970	171	MLP31 "AT1G70840" [Arabidopsis	0.603	0.578	0.291	9.9e-06
TAIR|locus:2079226	152	AT3G26460 "AT3G26460" [Arabido	0.737	0.796	0.264	0.00018
TAIR|locus:2014000	335	MLP28 "AT1G70830" [Arabidopsis	0.908	0.444	0.220	0.00019

TAIR|locus:2199932 MLP423 "MLP-like protein 423" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 44/147 (29%), Positives = 66/147 (44%)

Query:     9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGV-GTIKKFNFTEAVKEFR 67
             E KSP   E+ W AL  D  N  PKA P    +I +L GDG   G+I+   + E     +
Sbjct:    12 EVKSP--AEKFWVAL-GDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITYGEGSPLVK 68

Query:    68 YVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGD 127
                +R+E +D EN    YSI+ G +L +   ++   +T     DG    K   E+E    
Sbjct:    69 ISAERIEAVDLENKSMSYSIIGGEMLEY-YKTFKGTITVIPK-DGGSLLKWSGEFEKTAH 126

Query:   128 SLLSEEDVRNIKQGILTMVKAAERFLL 154
              +   +D   IK   +   K  + +LL
Sbjct:   127 EI---DDPHVIKDFAVKNFKEIDEYLL 150

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2143804 AT5G28000 "AT5G28000" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 38/149 (25%), Positives = 74/149 (49%)

Query:     9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGG-VGTIKKFNFTEAVKEFR 67
             + KSP   E+ ++  +    + + KA    + + DLLEG+ G + +I  +N+  A K  +
Sbjct:    22 DIKSP--AEKFYQVYV-GRPDHVAKATSSKVQACDLLEGEWGTISSIVNWNYVYAGKA-K 77

Query:    68 YVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDG-DCFAKLKIEYESLG 126
               K+R+E+++ E  + ++ ++EG +L    N ++  ++ T    G    AK  +EYE   
Sbjct:    78 VAKERIELVEPEKKLIKFRVIEGDVLAVYKNFFIT-ISVTPKEGGVGSVAKWHLEYEK-N 135

Query:   127 DSLLSEEDVRNIKQGILTMVKAAERFLLA 155
             D  ++  D  N    +  M K  +  LL+
Sbjct:   136 D--VNVPDPENFLPFLAEMTKEIDEHLLS 162

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2143809 AT5G28010 "AT5G28010" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 36/149 (24%), Positives = 74/149 (49%)

Query:     9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGG-VGTIKKFNFTEAVKEFR 67
             E K+P A+   +  +     + + KA P+ + S DL +G+ G VG+I  +N+     + +
Sbjct:    24 EIKAPAAI---FYHIYAGRPHHVAKATPRNVQSCDLHDGEWGTVGSIVYWNYVHE-GQAK 79

Query:    68 YVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGD-CFAKLKIEYESLG 126
               K+R+E+++ E  + ++ ++EG ++  +  S++  +  T    G     K  IEYE + 
Sbjct:    80 VAKERIELVEPEKKLIKFRVIEGDVMA-EYKSFLITIQVTPKEGGTGSVVKWHIEYEKID 138

Query:   127 DSLLSEEDVRNIKQGILTMVKAAERFLLA 155
             +++   E   N+      M K  +  LL+
Sbjct:   139 ENVPHPE---NLLPFFAEMTKEIDEHLLS 164

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2013920 AT1G70880 "AT1G70880" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 38/127 (29%), Positives = 59/127 (46%)

Query:     9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTEAVKEFR 67
             E KS  +VE+    L+   H+ M  A P  I S +L EG+ G VG +  +N+     E +
Sbjct:    17 ELKS--SVEKFHDLLVGRPHH-MSNATPSNIQSAELQEGEMGQVGAVILWNYVHD-GEAK 72

Query:    68 YVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFT-SSSDGDCFAKLKIEYESLG 126
               K R+E +D E +   Y +VEG +L  +  S+V     T    +    A    EYE + 
Sbjct:    73 SAKQRIESLDPEKNRITYRVVEGDLLK-EYTSFVTTFQVTPKEGEPGSVAHWHFEYEKIN 131

Query:   127 DSLLSEE 133
             + +   E
Sbjct:   132 EEVAHPE 138

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2006832 AT1G14960 "AT1G14960" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 39/144 (27%), Positives = 72/144 (50%)

Query:     4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTEA 62
             G+ V +     + E+ +K    + H  +P+A+  +I  + + +GD    GTIK +N+T  
Sbjct:     5 GTYVTDVPLKGSAEKHYKRWRSENH-LVPEAIGHLIQGVTVHDGDWDSHGTIKIWNYTRD 63

Query:    63 VKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEY 122
              KE   +K+R+E MD+EN     + ++G ++   +  YV  + F   S   C  K+ + +
Sbjct:    64 GKE-EVLKERIE-MDDENMAVTINGLDGHVMEV-LKVYVTTLHFIPESKDGCVCKITMVW 120

Query:   123 ES-LGDSLLSEEDVRNIKQGILTM 145
             E    DS    E ++ ++Q I  M
Sbjct:   121 EKRTEDSPEPIEFMKFVEQMIAHM 144

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:2013950 MLP43 "AT1G70890" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 37/156 (23%), Positives = 74/156 (47%)

Query:     5 SIVGEYKSPIAVERLWKA---LICDAHNFMPKALPQVISSIDLLEGDGG-VGTIKKFNFT 60
             S+VG+ ++ + ++   K    +  +  + + KA P  I   +L EGD G VG+I  + + 
Sbjct:     6 SLVGKLETEVEIKASAKKFHHMFTERPHHVSKATPDKIHGCELHEGDWGKVGSIVIWKYV 65

Query:    61 EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILG-FKVNSYVADVTFTSSSDGDCFAKLK 119
                K     K+++E +D E ++  + ++EG ++  +K  ++   VT      G   A   
Sbjct:    66 HDGK-LTVGKNKIEAVDPEKNLITFKVLEGDLMNEYKSFAFTLQVTPKQGESGS-IAHWH 123

Query:   120 IEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA 155
             +EYE + + +   E    + Q  + + K  +  LLA
Sbjct:   124 LEYEKISEEVAHPE---TLLQFCVEISKEIDEHLLA 156

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2013930 MLP34 "AT1G70850" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 36/125 (28%), Positives = 60/125 (48%)

Query:    33 KALPQVISSIDLLEGDGG-VGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGG 91
             KA P  I S DL EGD G VG+I  +N+     E +  K+R+E +D E ++  + ++EG 
Sbjct:   195 KATPGNIQSCDLHEGDWGTVGSIVFWNYVHD-GEAKVAKERIEAVDPEKNLITFRVIEGD 253

Query:    92 ILGFKVNSYVADVTFTSSSDGD-CFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAE 150
             ++  +  S+V  +  T    G         EYE + + +   E    + Q  + + K  +
Sbjct:   254 LMK-EYKSFVITIQVTPKHGGSGSVVHWHFEYEKINEEVAHPE---TLLQFAVEVSKEID 309

Query:   151 RFLLA 155
               LLA
Sbjct:   310 EHLLA 314

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2013970 MLP31 "AT1G70840" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 9.9e-06, P = 9.9e-06
 Identities = 30/103 (29%), Positives = 51/103 (49%)

Query:    33 KALPQVISSIDLLEGDGG-VGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGG 91
             KA P  I   +L EGD G VG+I  +N+     E +  K+R+E ++ E ++  + ++EG 
Sbjct:    50 KATPGKIQGCELHEGDWGKVGSIVFWNYVHD-GEAKVAKERIEAVEPEKNLITFRVIEGD 108

Query:    92 ILGFKVNSYVADVTFTSSSDGD-CFAKLKIEYESLGDSLLSEE 133
             +L  +  S+V  +  T    G        +EYE + D +   E
Sbjct:   109 LLK-EYKSFVITIQVTPKRGGPGSVVHWHVEYEKIDDKVAHPE 150

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2079226 AT3G26460 "AT3G26460" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 0.00018, P = 0.00018
 Identities = 33/125 (26%), Positives = 60/125 (48%)

Query:     4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGV-GTIKKFNFTEA 62
             G+ V E       E+ ++    + H F P A+   I  + + +G+    G+IK +N+T  
Sbjct:     5 GTYVTEVPLKGTAEKHFQRWRNENHLF-PDAVGHHIQGVSVHDGEWDTHGSIKIWNYTLG 63

Query:    63 VKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEY 122
               +    K+R E MD+EN+  +   +EG ++  ++  Y  D  F   S+ DC  K+ + +
Sbjct:    64 DGKQEEFKERRE-MDDENNTMKVVGLEGHVME-QLKVYEIDFQFIPKSEEDCICKITMIW 121

Query:   123 ESLGD 127
             E   D
Sbjct:   122 EKRND 126

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2014000 MLP28 "AT1G70830" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00019, P = 0.00019
 Identities = 35/159 (22%), Positives = 75/159 (47%)

Query:     5 SIVGEYKSPIAVERL---WKALICDAHNFMPKALPQVISSIDLLEGDGG-VGTIKKFNFT 60
             S+VG+ ++ + ++     +  +     + + KA P  I   DL EGD G VG+I  +N+ 
Sbjct:    21 SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 80

Query:    61 EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGD-CFAKLK 119
                 E +  K+R+E ++ + ++  + ++EG ++  +  S++  +  T    G        
Sbjct:    81 HD-GEAKVAKERIEAVEPDKNLITFRVIEGDLMK-EYKSFLLTIQVTPKPGGPGSIVHWH 138

Query:   120 IEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
             +EYE + + +   E    + Q  + + K  +  LLA  +
Sbjct:   139 LEYEKISEEVAHPE---TLLQFCVEVSKEIDEHLLAEEE 174

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	7e-52
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	3e-27
smart01037	151	smart01037, Bet_v_1, Pathogenesis-related protein	3e-14
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	1e-11

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score =  161 bits (411), Expect = 7e-52
 Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 2/150 (1%)

Query: 4   GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAV 63
           G++  E +  +  E+LWKA + D+H   PK  P VI S++LLEGDGG G+IK   F    
Sbjct: 1   GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGG 59

Query: 64  KEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYE 123
           K  +YVK+R++ +D EN  ++Y+++EG +L     SY  ++ F    DG C  K  IEYE
Sbjct: 60  K-VKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYE 118

Query: 124 SLGDSLLSEEDVRNIKQGILTMVKAAERFL 153
             GD+   EE+++  K+  L M KA E +L
Sbjct: 119 KKGDAEPPEEEIKAGKEKALKMFKAVEAYL 148

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 99.2 bits (248), Expect = 3e-27
 Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 7/154 (4%)

Query: 4   GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGG-VGTIKKFNFTEA 62
           G +  E +  ++ ++ +KA      + +PKA+P  I  +++ EG+ G  G+IKK+ +TE 
Sbjct: 3   GKLETEVEIKVSADKFYKAF-KLEDHLIPKAIPHHIQGVEVHEGEWGTGGSIKKWTYTED 61

Query: 63  VKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEY 122
            K  + VK+R+E  D +N    YS++EG +L     S++  +     S+G    K  IEY
Sbjct: 62  GK-PKVVKERIEADDEKNKTITYSVLEGDVLE-DYKSFITTLQVIPKSNGGSIVKWTIEY 119

Query: 123 ESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN 156
           E +GD      +     + ++ + K  E  LLAN
Sbjct: 120 EKIGD---DVPEPEKYLKFVVKLTKDIEAHLLAN 150

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 12/130 (9%)

Query: 5   SIVGEY------KSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGG-VGTIKKF 57
           ++ G        K     E+ +K  +   H+F PKA    I  +DL EGD G  G+IK +
Sbjct: 1   ALSGTLETEVPIKGS--AEKFFKRFVSRNHHF-PKATGHHIQGVDLHEGDWGSHGSIKIW 57

Query: 58  NFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAK 117
           N+T   KE    K+R+E +D+E     + ++EG ++  +  S+   +  T  S G    K
Sbjct: 58  NYTVDGKE-EVFKERIEAVDDEKKTITFRVLEGDVME-EYKSFKGTIQVTPKSGGGSVVK 115

Query: 118 LKIEYESLGD 127
             +EYE + +
Sbjct: 116 WTLEYEKINE 125

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 151

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 12/129 (9%)

Query: 16  VERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEI 75
            +++W AL+ D    + K  P V S  +L  G  GVG ++        K+   V++R+  
Sbjct: 13  ADKVW-ALLSDFGG-LHKWHPAVASC-ELEGGGPGVGAVRTVTL----KDGGTVRERLLA 65

Query: 76  MDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV 135
           +D+    + Y IVE G L  K  +YVA +  T   DG        E++      L++E  
Sbjct: 66  LDDAERRYSYRIVE-GPLPVK--NYVATIRVTPEGDGGTRVTWTAEFDPPE--GLTDELA 120

Query: 136 RNIKQGILT 144
           R    G+  
Sbjct: 121 RAFLTGVYR 129

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	100.0
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	100.0
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.81
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.7
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.67
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.6
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.57
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.55
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.53
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.48
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.45
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.45
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.41
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.35
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.35
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.34
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.33
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.3
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	99.29
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.26
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.25
PRK10724	158	hypothetical protein; Provisional	99.24
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	99.14
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	99.01
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.81
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.81
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.73
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	98.65
COG5637	217	Predicted integral membrane protein [Function unkn	98.59
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.54
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.54
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.54
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	98.52
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.5
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.48
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.42
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	98.35
COG3832	149	Uncharacterized conserved protein [Function unknow	98.28
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	98.27
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	98.26
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	98.06
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	98.06
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	97.74
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	97.64
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	97.47
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	97.28
cd08874	205	START_STARD9-like C-terminal START domain of mamma	97.24
cd08905	209	START_STARD1-like Cholesterol-binding START domain	97.22
COG4276	153	Uncharacterized conserved protein [Function unknow	96.94
cd08913	240	START_STARD14-like Lipid-binding START domain of m	96.81
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	96.74
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	96.66
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	96.22
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	96.12
cd08906	209	START_STARD3-like Cholesterol-binding START domain	95.8
cd08914	236	START_STARD15-like Lipid-binding START domain of m	95.46
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	95.45
cd00177	193	START Lipid-binding START domain of mammalian STAR	95.42
cd08871	222	START_STARD10-like Lipid-binding START domain of m	95.26
smart00234	206	START in StAR and phosphatidylcholine transfer pro	92.43
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	91.95
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	91.5
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	88.63
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	88.28
cd08872	235	START_STARD11-like Ceramide-binding START domain o	86.18

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=100.00  E-value=1.8e-40  Score=249.02  Aligned_cols=150  Identities=37%  Similarity=0.691  Sum_probs=138.8

Q ss_pred             CccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcc-cEEEEEeecCCcceeEEEEEEEEeeCC
Q 047051            1 MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVG-TIKKFNFTEAVKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G-~vR~~~~~~g~~~~~~~kErl~~~D~~   79 (164)
                      |++++++.|+++++||+++|+++ ++.++++|+++|++|++++++||||++| |||.|+|.++ ++..++|||++.+|++
T Consensus         1 m~~~~~~~E~~~~~~a~k~~ka~-~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~-~~~~~~Kekve~~D~~   78 (151)
T PF00407_consen    1 MGVGKLEVEVEVKVSADKLWKAF-KSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPG-GPFKYVKEKVEAIDEE   78 (151)
T ss_dssp             SCEEEEEEEEEESS-HHHHHHHH-TTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETT-SSEEEEEEEEEEEETT
T ss_pred             CCcEEEEEEEEecCCHHHHHHHH-hcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCC-CCcceeEEEEEeecCC
Confidence            99999999999999999999998 5677899999999999999999999887 9999999988 6789999999999999


Q ss_pred             CcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC
Q 047051           80 NHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      +++++|+++||+++ ..+.+|..++++.|.++|+|+++|+++|++.++..++|+..   .+++.+|+|++|+||++|
T Consensus        79 ~~~~~y~viEGd~l-~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~---~~~~~~~~K~ieayLlan  151 (151)
T PF00407_consen   79 NKTITYTVIEGDVL-GDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKY---LDFAVGMFKAIEAYLLAN  151 (151)
T ss_dssp             TTEEEEEEEEETTG-TTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEEEecccc-ccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHH---HHHHHHHHHHHHHHHhcC
Confidence            99999999999987 57899999999999999899999999999999888778766   677999999999999997

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=100.00  E-value=2.3e-35  Score=220.29  Aligned_cols=146  Identities=36%  Similarity=0.676  Sum_probs=129.9

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccc-cccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMP-KALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p-~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      ++++++++|++|||+||+++ +||.+.+| .|+| +|++|++++|+|++||+|.|+|.+| ++.+.++|||+.+|+++|+
T Consensus         1 ~~~~~e~~i~a~ad~vW~~~-~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~-~~~~~~kE~l~~~D~~~~~   77 (148)
T cd07816           1 GTLEHEVELKVPAEKLWKAF-VLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPG-GKVKYVKERIDAVDEENKT   77 (148)
T ss_pred             CcEEEEEEecCCHHHHHHHH-hcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCC-CcceEEEEEEEEEcccccE
Confidence            47899999999999999996 89984344 5666 7999999999999999999999988 4667899999999999999


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  155 (164)
                      ++|++++|+++..+|++|+++++|.|.++++|+++|+++|++.+++.++|+.+   ++.+..+++.++.|++.
T Consensus        78 ~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~  147 (148)
T cd07816          78 YKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEI---KAGKEKALKMFKAVEAY  147 (148)
T ss_pred             EEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHH---HhHHHHHHHHHHHHHhc
Confidence            99999999986337999999999999988899999999999999988888877   67788888999888865

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.81  E-value=4.3e-18  Score=122.72  Aligned_cols=138  Identities=22%  Similarity=0.377  Sum_probs=114.1

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      .++.+++|++|+++||+++ .|+.+ +++|.|. ++++++.++..++|+++.+.+..|    ..+++++..+|+.+++++
T Consensus         2 ~i~~~~~i~a~~~~V~~~l-~d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g----~~~~~~i~~~~~~~~~i~   74 (140)
T cd07821           2 KVTVSVTIDAPADKVWALL-SDFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG----GTVRERLLALDDAERRYS   74 (140)
T ss_pred             cEEEEEEECCCHHHHHHHH-hCcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC----CEEEEEehhcCccCCEEE
Confidence            4678999999999999997 79997 8999997 778888765446899999988765    368999999999878899


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFL  153 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l  153 (164)
                      |++.+++.   ++.++.++++|+|.++|+|.++|+..|++.+. .+.+.....+.+.+...++.|++++
T Consensus        75 ~~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~  139 (140)
T cd07821          75 YRIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL  139 (140)
T ss_pred             EEecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence            99998743   67889999999999887899999999999865 3344322456777888888888876

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.70  E-value=1.1e-14  Score=104.89  Aligned_cols=107  Identities=23%  Similarity=0.397  Sum_probs=88.2

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      .+++.++.|++|+++||+++ .|+.+ +++|.|+ +.++++.++ +++|..+.++....    ..+++++..+|++.+.+
T Consensus         2 ~~~~~~~~v~a~~e~V~~~l-~d~~~-~~~w~~~-~~~~~~~~~-~~~~~~~~~~~~g~----~~~~~~i~~~~~~~~~~   73 (139)
T PF10604_consen    2 FKVEVSIEVPAPPEAVWDLL-SDPEN-WPRWWPG-VKSVELLSG-GGPGTERTVRVAGR----GTVREEITEYDPEPRRI   73 (139)
T ss_dssp             EEEEEEEEESS-HHHHHHHH-TTTTG-GGGTSTT-EEEEEEEEE-CSTEEEEEEEECSC----SEEEEEEEEEETTTTEE
T ss_pred             EEEEEEEEECCCHHHHHHHH-hChhh-hhhhhhc-eEEEEEccc-cccceeEEEEeccc----cceeEEEEEecCCCcEE
Confidence            46888999999999999996 89997 8999996 889998653 34566566665431    36999999999889999


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEE
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYES  124 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~  124 (164)
                      .|++. .    .++.++.++++|+|.++| |.+.|+.+|++
T Consensus        74 ~~~~~-~----~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~  108 (139)
T PF10604_consen   74 TWRFV-P----SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP  108 (139)
T ss_dssp             EEEEE-S----SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred             EEEEE-e----cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence            99996 2    367899999999999875 99999999998

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.67  E-value=1.2e-14  Score=106.25  Aligned_cols=137  Identities=18%  Similarity=0.206  Sum_probs=96.9

Q ss_pred             EEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCC---cceeEEEEEEEEeeCCCcEE
Q 047051            7 VGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAV---KEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         7 ~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~---~~~~~~kErl~~~D~~~~~~   83 (164)
                      +.++.|++|+++||+++ .|+++ +|+|+|+ +++++++++.+ .+.........+.   .-...+..++...++..+.+
T Consensus         2 ~~~~~i~a~~~~Vw~~l-~D~~~-~~~w~p~-v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i   77 (144)
T cd08866           2 VARVRVPAPPETVWAVL-TDYDN-LAEFIPN-LAESRLLERNG-NRVVLEQTGKQGILFFKFEARVVLELREREEFPREL   77 (144)
T ss_pred             eEEEEECCCHHHHHHHH-hChhh-HHhhCcC-ceEEEEEEcCC-CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceE
Confidence            57899999999999996 89997 8999997 88999887643 1211111100000   00023455666667667899


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCC-CceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHHh
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSD-GDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFLL  154 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~d-g~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l~  154 (164)
                      +|++++|+     +..+.++++++|.++ |+|+++|+.++++...  ++....+ ..++.+..++++|.+.+.
T Consensus        78 ~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~ae  143 (144)
T cd08866          78 DFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEAE  143 (144)
T ss_pred             EEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998774     678999999999988 6899999999999762  2222233 366677788888877653

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.60  E-value=9.2e-14  Score=101.32  Aligned_cols=139  Identities=18%  Similarity=0.188  Sum_probs=96.0

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY   85 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   85 (164)
                      +++++.|++|+++||+++ .|+.+ +|+|+|.  .+++.++++++...++.+....+.... .+ +....+|++.+.+.|
T Consensus         1 ~~~s~~i~ap~~~V~~~l-~D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~i~~   74 (142)
T cd08861           1 VEHSVTVAAPAEDVYDLL-ADAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVH-TW-TSRRVLDPEGRRIVF   74 (142)
T ss_pred             CeEEEEEcCCHHHHHHHH-HhHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEE-EE-EEEEEEcCCCCEEEE
Confidence            368899999999999996 89997 9999996  455555543322245555554221222 23 334457887888999


Q ss_pred             EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHH
Q 047051           86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFL  153 (164)
Q Consensus        86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l  153 (164)
                      ..+++..   .+..+.++++|+|.++++|.|+|+.+|++........... +.+.+.+..++++|.+++
T Consensus        75 ~~~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  140 (142)
T cd08861          75 RQEEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAA  140 (142)
T ss_pred             EEeeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHh
Confidence            9987643   5789999999999987789999999999986433222222 234445666777766654

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.57  E-value=9.2e-13  Score=95.13  Aligned_cols=112  Identities=15%  Similarity=0.171  Sum_probs=82.0

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecC-CCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEG-DGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG-dg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      .+++.++.|++|+++||+++ .|+.+ +|+|+|. +.+++++++ +++.+....+++..+ +-...+.-+++ .++ .+.
T Consensus         2 ~~v~~s~~i~ap~e~V~~~l-~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~~   75 (140)
T cd07819           2 IKVSREFEIEAPPAAVMDVL-ADVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAY-GIKDTYALEYT-WDG-AGS   75 (140)
T ss_pred             ceEEEEEEEeCCHHHHHHHH-hChhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeee-eEEEEEEEEEE-EcC-CCc
Confidence            47899999999999999996 89997 9999997 889998654 333333344555433 11111222222 233 677


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG  126 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~  126 (164)
                      ++|+..++.    +...+.++++|+|.++ +|.++|+.++++..
T Consensus        76 i~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~  114 (140)
T cd07819          76 VSWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTV  114 (140)
T ss_pred             EEEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecC
Confidence            999998775    4678899999999987 79999999999865

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.55  E-value=9.1e-13  Score=94.57  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=94.3

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +++++.|++|+++||+++ .|+.+ +++|.|+ +.+++.+.+. .++|+...+....+ +..-.++++++.+|+ .+.++
T Consensus         1 ~~~~~~i~ap~~~Vw~~l-~d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~-g~~~~~~~~v~~~~p-~~~~~   75 (140)
T cd08865           1 VEESIVIERPVEEVFAYL-ADFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFL-GRRIELTYEITEYEP-GRRVV   75 (140)
T ss_pred             CceEEEEcCCHHHHHHHH-HCccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEec-CceEEEEEEEEEecC-CcEEE
Confidence            367899999999999997 89997 8999997 6778876433 36788888876533 222357899998885 46788


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHH
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFL  153 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l  153 (164)
                      |...++.     + .+..++++.|.++ +|.++|+.+|+...-........+ ..+..+..+++++.+++
T Consensus        76 ~~~~~~~-----~-~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  138 (140)
T cd08865          76 FRGSSGP-----F-PYEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL  138 (140)
T ss_pred             EEecCCC-----c-ceEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            9876542     2 4689999999876 699999999997321111111111 23444556666665554

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.53  E-value=7.3e-13  Score=96.54  Aligned_cols=134  Identities=16%  Similarity=0.205  Sum_probs=97.5

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY   85 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   85 (164)
                      ++.++.|++|++.||+++ .|+.+ +|+|+|+ +.+++++++++ -+....+...-+ +-...+..++. +++ .+++++
T Consensus         1 ~~~s~~i~ap~~~v~~~i-~D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~~i~~   73 (138)
T cd07813           1 YSKSRLVPYSAEQMFDLV-ADVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFG-GIRESFTSRVT-LVP-PESIEA   73 (138)
T ss_pred             CeEEEEcCCCHHHHHHHH-HHHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeec-cccEEEEEEEE-ecC-CCEEEE
Confidence            367899999999999996 89997 9999997 88999988654 234444555422 21234555655 666 667889


Q ss_pred             EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-H-HHHHHHHHHHHHHHHHHh
Q 047051           86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-R-NIKQGILTMVKAAERFLL  154 (164)
Q Consensus        86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~k~ie~~l~  154 (164)
                      ..++|     +++.+.+++++.|.++|+|.++|..+|++.+.   -+..+ . .+.+....+++++++.+.
T Consensus        74 ~~~~g-----~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~---l~~~l~~~~~~~~~~~~l~~f~~~~~  136 (138)
T cd07813          74 ELVDG-----PFKHLEGEWRFKPLGENACKVEFDLEFEFKSR---LLEALAGLVFDEVAKKMVDAFEKRAK  136 (138)
T ss_pred             EecCC-----ChhhceeEEEEEECCCCCEEEEEEEEEEECCH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88877     46789999999999988999999999999852   22222 2 245566677777766543

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.48  E-value=5.7e-12  Score=90.86  Aligned_cols=135  Identities=15%  Similarity=0.102  Sum_probs=92.1

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +++.++.|++|+++||+++ .|+.+ +|+|+|+ +.+++...+..++|+...++...+    ..+..++..+++.+ +++
T Consensus         2 ~~~~~~~i~Ap~~~Vw~~~-~d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~----~~~~~~i~~~~p~~-~~~   73 (138)
T cd08862           2 KFEATIVIDAPPERVWAVL-TDVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGL----VRSTFTVTELRPGH-SFT   73 (138)
T ss_pred             EEEEEEEEcCCHHHHHHHH-Hhhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCC----CceEEEEEEecCCC-EEE
Confidence            5788999999999999996 89997 8999997 788888654326777666655433    24677888888655 577


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFL  153 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l  153 (164)
                      |+... +     ...+..++.|++.++++|.+.|+.+|.........+...+.+...+...++.|.+.+
T Consensus        74 ~~~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  136 (138)
T cd08862          74 WTGPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAA  136 (138)
T ss_pred             EEecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            77532 1     235568999999876789999999887542111111111234455556666665543

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.45  E-value=1.4e-11  Score=91.73  Aligned_cols=138  Identities=11%  Similarity=0.114  Sum_probs=90.3

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      ..+++++|++||+.||+++ .|..+ +|.|+|. +.++++++.++ +.|..-.+....+ +....+.-+.. +|...+++
T Consensus         2 ~~~~si~i~a~~~~v~~lv-aDv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~-g~~~~w~s~~~-~~~~~~~i   76 (146)
T cd08860           2 RTDNSIVIDAPLDLVWDMT-NDIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDAN-GTVWSWVSERT-LDPVNRTV   76 (146)
T ss_pred             cceeEEEEcCCHHHHHHHH-Hhhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccC-CEEEEEEEEEE-ecCCCcEE
Confidence            4679999999999999996 89997 9999997 77889887543 4442211222112 22233433323 78888888


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHH
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERF  152 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~  152 (164)
                      .++-. .++   |+....++++|+|.++| |.+++..+|+..++......-+ +.....+...++.|.+.
T Consensus        77 ~~~~~-~~~---p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~  141 (146)
T cd08860          77 RARRV-ETG---PFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKK  141 (146)
T ss_pred             EEEEe-cCC---CcceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHH
Confidence            77411 122   68999999999999764 9999999999886554333223 22333344444444433

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.45  E-value=1.8e-11  Score=88.07  Aligned_cols=138  Identities=17%  Similarity=0.118  Sum_probs=92.1

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY   85 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   85 (164)
                      ++.++.|++|+++||+++ .|+.+ +|+|+|. +..++...  .++|+...+.+..+.+....+.+++..+|+. +++.|
T Consensus         2 v~~~~~i~ap~~~Vw~~~-~d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~   75 (141)
T cd07822           2 ISTEIEINAPPEKVWEVL-TDFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW   75 (141)
T ss_pred             eEEEEEecCCHHHHHHHH-hcccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence            678999999999999997 79996 8999986 55554321  4567777777653212224578888988875 46889


Q ss_pred             EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 047051           86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERF  152 (164)
Q Consensus        86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~  152 (164)
                      +...++.   ..-....++.|+|.++++|++.|+..|............-..+.+.+..+++.|.++
T Consensus        76 ~~~~~~~---~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~  139 (141)
T cd07822          76 RGGLPFP---GLLDGEHSFELEPLGDGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKAR  139 (141)
T ss_pred             EecCCCC---cEeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHh
Confidence            9866653   233567899999987778999999888654221111110112344455555555544

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.41  E-value=3.8e-11  Score=84.05  Aligned_cols=135  Identities=19%  Similarity=0.301  Sum_probs=95.9

Q ss_pred             EEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051            7 VGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY   85 (164)
Q Consensus         7 ~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   85 (164)
                      +.++.|++|+++||+.+ .|+.+ +++|.|+ +.++++.++. ...|....+.+..+  .....+.++..+++ ...++|
T Consensus         2 ~~~~~i~a~~~~v~~~l-~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~-~~~~~~   75 (141)
T cd07812           2 EASIEIPAPPEAVWDLL-SDPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG--RRLTLTSEVTEVDP-PRPGRF   75 (141)
T ss_pred             cEEEEeCCCHHHHHHHH-hChhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC--ccccceEEEEEecC-CCceEE
Confidence            57889999999999997 79996 8999997 7888876543 35666666665422  22357888887777 567889


Q ss_pred             EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC--CChHHHHHHHHHHHHHHHHHHH
Q 047051           86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL--LSEEDVRNIKQGILTMVKAAER  151 (164)
Q Consensus        86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~ie~  151 (164)
                      +...++.   + ..+..++++.+.++++|.+.|+.++.+.....  ..+...+...+.+..+++.++.
T Consensus        76 ~~~~~~~---~-~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T cd07812          76 RVTGGGG---G-VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA  139 (141)
T ss_pred             EEecCCC---C-cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence            9887664   2 68899999999987589999999999986442  2222112234444555555544

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.35  E-value=6.5e-11  Score=85.27  Aligned_cols=136  Identities=15%  Similarity=0.125  Sum_probs=93.4

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY   85 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   85 (164)
                      ++.++.|++|+++||+++ .|+.+ +|+|.|+ +..++.....|  |+.+.+....+ +....+..++..+|+. +.+.|
T Consensus         2 i~~s~~I~a~~~~Vw~~l-~d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~-g~~~~~~~~i~~~~~~-~~i~~   74 (139)
T cd07814           2 ITIEREFDAPPELVWRAL-TDPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPD-GEEGWVSGEVLEVEPP-RRLVF   74 (139)
T ss_pred             eEEEEEecCCHHHHHHHc-CCHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCC-CCEEeccEEEEEEcCC-CeEEE
Confidence            678899999999999997 79996 8999985 22333211223  66665544332 2224578889988866 56999


Q ss_pred             EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 047051           86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFL  153 (164)
Q Consensus        86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l  153 (164)
                      +...++.  .+......+++|.|.+ ++|.++|+.++.+....  .+.....+......++..|.+++
T Consensus        75 ~~~~~~~--~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~  137 (139)
T cd07814          75 TWAFSDE--TPGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALL  137 (139)
T ss_pred             EecccCC--CCCCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHh
Confidence            9877643  1345678899999998 47999999999986421  22223345566667777777665

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.35  E-value=5.2e-11  Score=86.87  Aligned_cols=140  Identities=8%  Similarity=0.050  Sum_probs=93.2

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC--CCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD--GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd--g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      ++.++.|++|+++||+++ .|+.+ +|+|.|..... ....++  -++|+...+......++. .+..+++.+++..+ +
T Consensus         2 i~~~~~i~ap~e~Vw~~l-~d~~~-~~~W~~~~~~~-~~~~~~~~~~~G~~~~~~~~~~g~~~-~~~~~v~~~~p~~~-l   76 (144)
T cd07825           2 VSVSRTVDAPAEAVFAVL-ADPRR-HPEIDGSGTVR-EAIDGPRILAVGDVFRMAMRLDGGPY-RITNHVVAFEENRL-I   76 (144)
T ss_pred             eEEEEEEeCCHHHHHHHH-hCccc-cceeCCCCccc-cccCCCccCCCCCEEEEEEEcCCCce-EEEEEEEEECCCCE-E
Confidence            678899999999999997 89996 89999852222 222333  267887777765421333 46677887777665 8


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFL  153 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l  153 (164)
                      +|+..-.+.   +......++++++.++|+|+++++.+|...+....-+.............+..|++++
T Consensus        77 ~~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~  143 (144)
T cd07825          77 AWRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA  143 (144)
T ss_pred             EEEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence            898531111   2345667899999988889999999988764211111101123556778888888876

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.34  E-value=1.3e-10  Score=85.38  Aligned_cols=140  Identities=14%  Similarity=0.036  Sum_probs=91.2

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCccee--eEEE--ecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCC
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVIS--SIDL--LEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~--s~e~--~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~   79 (164)
                      -+++.++.|++|+++||+++ .|+.+ +|+|.|....  .++.  .+++.++|+...++...+.+   ....++..+++ 
T Consensus         2 ~~~~~s~~I~ap~e~V~~~i-~D~~~-~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~~~v~~~~p-   75 (150)
T cd07818           2 YRVERSIVINAPPEEVFPYV-NDLKN-WPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVG---EGEMEITESVP-   75 (150)
T ss_pred             eEEEEEEEEeCCHHHHHHHH-hCccc-CcccCchhhcCcceEEEecCCCCCCCeEEEEecCCccc---ceEEEEEecCC-
Confidence            36889999999999999996 89997 9999995321  1221  12334678877776554211   34456676665 


Q ss_pred             CcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCC--ChHHH-HHHHHHHHHHHHHHHHHH
Q 047051           80 NHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLL--SEEDV-RNIKQGILTMVKAAERFL  153 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~k~ie~~l  153 (164)
                      .+++.|++..++++  + ..+.++++|+|.+ +||.++|+.+|+.......  ..... ..+++.+...+.++.+++
T Consensus        76 ~~~i~~~~~~~~~~--~-~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~  148 (150)
T cd07818          76 NERIEYELRFIKPF--E-ATNDVEFTLEPVG-GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVL  148 (150)
T ss_pred             CcEEEEEEEecCCc--c-ccceEEEEEEEcC-CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            55699999765432  1 3778999999995 5799999999997642210  00111 123445555566665554

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.33  E-value=2e-10  Score=83.19  Aligned_cols=139  Identities=16%  Similarity=0.168  Sum_probs=86.2

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +++.++.+++|+++||+++ .|+.+ +++|+|+ +++++.+++++ ......+.+... +..-..+-++..+|+. +.+.
T Consensus         2 ~~~~~~~i~a~~e~v~~~l-~D~~~-~~~w~p~-~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~   75 (144)
T cd05018           2 KISGEFRIPAPPEEVWAAL-NDPEV-LARCIPG-CESLEKIGPNE-YEATVKLKVGPV-KGTFKGKVELSDLDPP-ESYT   75 (144)
T ss_pred             eeeeEEEecCCHHHHHHHh-cCHHH-HHhhccc-hhhccccCCCe-EEEEEEEEEccE-EEEEEEEEEEEecCCC-cEEE
Confidence            4788999999999999997 89996 8999997 77777654321 111111222111 1011124455544544 5677


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCC-ChHHH-HHHHHHHHHHHHHHHHH
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLL-SEEDV-RNIKQGILTMVKAAERF  152 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~k~ie~~  152 (164)
                      ++....+.  .....+.++++++|. +++|.++|+.+|++.+.... ....+ +...+.+..+++.+.++
T Consensus        76 ~~~~~~~~--~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~  142 (144)
T cd05018          76 ITGEGKGG--AGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASK  142 (144)
T ss_pred             EEEEEcCC--CceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            77654332  135689999999998 66899999999998753211 22222 23444555666665554

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.30  E-value=1.6e-10  Score=83.39  Aligned_cols=107  Identities=18%  Similarity=0.243  Sum_probs=78.5

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +++.++.|++|+++||+++ .|+.+ +|+|.|+ +++++++.+.   +....+.+..| .. ..+..++...++.. .+.
T Consensus         1 ~v~~~i~I~ap~e~V~~~~-~D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g-~~-~~~~~~v~~~~~~~-~i~   71 (139)
T cd07817           1 TVEKSITVNVPVEEVYDFW-RDFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAG-LS-VEWDAEITEQVPNE-RIA   71 (139)
T ss_pred             CeeEEEEeCCCHHHHHHHH-hChhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCC-Cc-EEEEEEEeccCCCC-EEE
Confidence            3678999999999999997 89997 9999997 7888876441   22222333324 22 35666666555544 588


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG  126 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~  126 (164)
                      |....|.     + .+.+++.|+|.++++|.++++..|++..
T Consensus        72 ~~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~  107 (139)
T cd07817          72 WRSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPG  107 (139)
T ss_pred             EEECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence            9875542     3 5679999999887789999999999875

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=99.29  E-value=3.6e-10  Score=81.12  Aligned_cols=125  Identities=20%  Similarity=0.355  Sum_probs=84.0

Q ss_pred             ecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEEEEecc
Q 047051           12 SPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGG   91 (164)
Q Consensus        12 i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i~eg~   91 (164)
                      |++|+++||+++ .|+.+ +|+|+|. ++++++++.++. +..-.+....+..+ ..+..++. .+...+ +.+..++| 
T Consensus         1 V~ap~~~V~~~i-~D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~g-   72 (130)
T PF03364_consen    1 VNAPPEEVWSVI-TDYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIK-RSWTSRVT-EDPPER-IRFEQISG-   72 (130)
T ss_dssp             ESS-HHHHHHHH-TTGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTC-EEEEEEEE-EECTTT-EEEESSET-
T ss_pred             CCCCHHHHHHHH-HHHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEE-EEEEEEEE-EEEeee-eeeeecCC-
Confidence            689999999996 89997 9999997 889999886543 33334555544233 45677776 344444 77777777 


Q ss_pred             ccccceeEEEEEEEEeeCCC--CceeEEEEEEEEEcCCCCCChHHH-H-HHHHHHHHHHHHH
Q 047051           92 ILGFKVNSYVADVTFTSSSD--GDCFAKLKIEYESLGDSLLSEEDV-R-NIKQGILTMVKAA  149 (164)
Q Consensus        92 ~~~~~~~~y~~ti~v~~~~d--g~s~v~w~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~k~i  149 (164)
                          +++.+.+++++.|.++  |+|.++++.+|+...... .+..+ . ...+....++++|
T Consensus        73 ----~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  129 (130)
T PF03364_consen   73 ----PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGP-LPGFLARQFFRRDLRQMLEAF  129 (130)
T ss_dssp             ----TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcH-hHHHHHHHHHHHHHHHHHHhh
Confidence                5799999999999985  367777777777754333 34333 2 2344445555554

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.26  E-value=1.1e-09  Score=80.71  Aligned_cols=109  Identities=18%  Similarity=0.338  Sum_probs=76.4

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEec-CC-CCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLE-GD-GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~e-Gd-g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      ++.+..|++|+++||+++ .|+.+ +|+|.|+ +.++++++ +. .++|+.-++......+....+.-++...+ ..+.+
T Consensus         3 ~~~~~~i~ap~e~Vw~~~-tD~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~-p~~~~   78 (146)
T cd07824           3 FHTVWRIPAPPEAVWDVL-VDAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIE-PLSLL   78 (146)
T ss_pred             ceEEEEecCCHHHHHHHH-hChhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeec-CCcEE
Confidence            567789999999999996 89996 9999996 88888876 23 36676644443221111123455555544 45568


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG  126 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~  126 (164)
                      +|+. +|+.     . ...+++|+|.++ ||.++++.+++..+
T Consensus        79 ~~~~-~g~~-----~-~~~~~~~~~~~~-gt~vt~~~~~~~~~  113 (146)
T cd07824          79 EVRA-SGDL-----E-GVGRWTLAPDGS-GTVVRYDWEVRTTK  113 (146)
T ss_pred             EEEE-EEee-----e-EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence            8875 5542     2 368899999765 69999999999754

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.25  E-value=2.9e-10  Score=83.01  Aligned_cols=109  Identities=13%  Similarity=0.160  Sum_probs=84.8

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-C--CcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-G--GVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g--~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      ++.++.|++|+++||+.+ .|+.+ +|+|+|+ +.++++++.+ |  .+|+.-.+.+.....+. .++-+++.+++. +.
T Consensus         1 ~~~s~~I~ap~e~V~~~~-~d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~p~-~~   75 (137)
T cd07820           1 LERSTVIPAPIEEVFDFH-SRPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVEPP-RR   75 (137)
T ss_pred             CeEEEEcCCCHHHHHHHH-cCcch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEcCC-Ce
Confidence            467899999999999996 89997 9999997 7788887433 2  55788778777552233 467777766654 45


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEc
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESL  125 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~  125 (164)
                      +++....|     ++.++..+..++|.++ +|.++++++|+..
T Consensus        76 f~~~~~~G-----~~~~w~h~~~f~~~~~-gT~vt~~v~~~~p  112 (137)
T cd07820          76 FVDEQVSG-----PFRSWRHTHRFEAIGG-GTLMTDRVEYRLP  112 (137)
T ss_pred             EEEEeccC-----CchhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence            88887766     4567888999999876 6999999999984

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PRK10724 hypothetical protein; Provisional

Probab=99.24  E-value=8.2e-10  Score=83.42  Aligned_cols=133  Identities=18%  Similarity=0.258  Sum_probs=93.6

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +++.++.+++|++++|+++ .|..+ +|+|+|. .+++++++.++. +.+..++.+-+ +-...+..|.. +++.+ ++.
T Consensus        16 ~i~~~~~v~~s~~~v~~lv-~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~-g~~~~f~srv~-~~~~~-~I~   88 (158)
T PRK10724         16 QISRTALVPYSAEQMYQLV-NDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKA-GISKTFTTRNQ-LTSNQ-SIL   88 (158)
T ss_pred             eEEEEEEecCCHHHHHHHH-HHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeC-CccEEEEEEEE-ecCCC-EEE
Confidence            5778899999999999995 89996 9999997 667788765432 23444444422 22245666666 45544 799


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-H-HHHHHHHHHHHHHHHH
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-R-NIKQGILTMVKAAERF  152 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~k~ie~~  152 (164)
                      +++++|     |++.+.+.|+|.|.++++|.|++..+|+...   +-.+.+ + -..+.+..|.+++++.
T Consensus        89 ~~~~~G-----pF~~l~g~W~f~p~~~~~t~V~~~l~fef~s---~l~~~~~~~~~~~~~~~mv~AF~~R  150 (158)
T PRK10724         89 MQLVDG-----PFKKLIGGWKFTPLSQEACRIEFHLDFEFTN---KLIELAFGRVFKELASNMVQAFTVR  150 (158)
T ss_pred             EEecCC-----ChhhccceEEEEECCCCCEEEEEEEEEEEch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987     4789999999999987789999999999775   222222 1 1334445566566553

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.14  E-value=3.4e-09  Score=78.09  Aligned_cols=139  Identities=13%  Similarity=0.151  Sum_probs=81.6

Q ss_pred             EEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEE--EEEEEEeeCCCcEEE
Q 047051            7 VGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYV--KDRVEIMDNENHVFR   84 (164)
Q Consensus         7 ~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~--kErl~~~D~~~~~~~   84 (164)
                      +.++.+++|+++||+++ .|+.+ ++.|+|+ +++++.+ |++..  .-.+++.-+..+ ..+  +=++..++...+.++
T Consensus         2 ~~~~~v~a~pe~vw~~l-~D~~~-~~~~~pg-~~~~~~~-~~~~~--~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~   74 (146)
T cd07823           2 ENEFTVPAPPDRVWALL-LDIER-VAPCLPG-ASLTEVE-GDDEY--KGTVKVKLGPIS-ASFKGTARLLEDDEAARRAV   74 (146)
T ss_pred             CceEEecCCHHHHHHHh-cCHHH-HHhcCCC-ceecccc-CCCeE--EEEEEEEEccEE-EEEEEEEEEEeccCCCcEEE
Confidence            57889999999999997 89996 8999997 7777653 32221  122333322011 112  124555554677787


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC-CChHHHH-HHHHHHHHHHHHHHHHH
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL-LSEEDVR-NIKQGILTMVKAAERFL  153 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~k~ie~~l  153 (164)
                      ++.-..+.....--....++++.|. +++|.+.|+.+++..+... +....++ ..++.+..+++.+.+.+
T Consensus        75 ~~~~g~~~~~~g~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~  144 (146)
T cd07823          75 LEATGKDARGQGTAEATVTLRLSPA-GGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL  144 (146)
T ss_pred             EEEEEecCCCcceEEEEEEEEEEec-CCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence            7754321110111256778888884 4689999999998776321 1112222 23444555555555543

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=99.01  E-value=1.6e-08  Score=75.19  Aligned_cols=140  Identities=17%  Similarity=0.220  Sum_probs=95.7

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCC--cceeEEEEEEEEeeCCCcE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAV--KEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~--~~~~~~kErl~~~D~~~~~   82 (164)
                      .++.+..|++|+++||+.| .|+.. +-..+|+ ++|++. +||.   ..-.+.+.-|.  +.+ .-+=++..+|+..++
T Consensus         2 ~~~G~f~V~~p~e~Vw~~L-~dpe~-~a~ciPG-~qs~e~-~g~e---~~~~v~l~ig~l~~~~-~g~~~~~~v~~~~~~   73 (146)
T COG3427           2 DYEGTFRVAAPPEAVWEFL-NDPEQ-VAACIPG-VQSVET-NGDE---YTAKVKLKIGPLKGTF-SGRVRFVNVDEPPRS   73 (146)
T ss_pred             cccceEEecCCHHHHHHHh-cCHHH-HHhhcCC-cceeee-cCCe---EEEEEEEeecceeEEE-EEEEEEccccCCCcE
Confidence            3678899999999999997 79995 7899998 999987 5662   12222232221  111 234456666788888


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCC-CCChHHHH-HHHHHHHHHHHHHHHHHhh
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS-LLSEEDVR-NIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~k~ie~~l~~  155 (164)
                      ++.+--+|..  ..+-+..+.+.++|.+++ |++.|.++-+..+.. .+-+..++ .+++....+++.|..+|.+
T Consensus        74 ~~i~g~G~~~--~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~  145 (146)
T COG3427          74 ITINGSGGGA--AGFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA  145 (146)
T ss_pred             EEEEeecccc--cceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777655333  467788999999999886 999999998877522 12223332 3556667777777777643

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.81  E-value=1.5e-07  Score=68.29  Aligned_cols=139  Identities=16%  Similarity=0.194  Sum_probs=82.3

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +++.++.|++|+++||+++ .|+.. +++|.|...  .....|.+..|   .+.+.+.  ......-++..+++..+ +.
T Consensus         2 ~i~~~i~i~a~~e~Vw~~~-td~~~-~~~W~~~~~--~~~~~~~~~~g---~~~~~~~--~~~~~~~~i~~~~p~~~-l~   71 (145)
T cd08898           2 RIERTILIDAPRERVWRAL-TDPEH-FGQWFGVKL--GPFVVGEGATG---EITYPGY--EHGVFPVTVVEVDPPRR-FS   71 (145)
T ss_pred             eeEEEEEecCCHHHHHHHh-cChhh-hhhcccccC--CCcccCCccee---EEecCCC--CccceEEEEEEeCCCcE-EE
Confidence            5789999999999999997 79995 899988532  11111222222   3334322  11134456666666554 77


Q ss_pred             EEEEeccc---c-ccceeEEEEEEEEeeCCCCceeEEEEEE-EEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051           85 YSIVEGGI---L-GFKVNSYVADVTFTSSSDGDCFAKLKIE-YESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        85 Y~i~eg~~---~-~~~~~~y~~ti~v~~~~dg~s~v~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  155 (164)
                      |+......   . .........+++|++.++ +|.++++.. |...++.. .........+....++..|++||.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gT~vt~~~~~~~~~~~~~-~~~~~~~~~~gw~~~l~~L~~~le~  145 (145)
T cd08898          72 FRWHPPAIDPGEDYSAEPSTLVEFTLEPIAG-GTLLTVTESGFDALPAER-RAEAYRMNEGGWDEQLENLVAYVEA  145 (145)
T ss_pred             EEecCCCcccccccCCCCceEEEEEEEecCC-cEEEEEEEcCCCCCChHH-HHHHHHhhhhhHHHHHHHHHHHhcC
Confidence            87643320   0 001234568899999864 699999887 43221000 0112233556777888888888753

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.81  E-value=5.5e-07  Score=66.27  Aligned_cols=136  Identities=21%  Similarity=0.279  Sum_probs=79.1

Q ss_pred             EEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEEEE
Q 047051            9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIV   88 (164)
Q Consensus         9 e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i~   88 (164)
                      +.+|++|+++||+.| .|+.+ +-+.+|+ +++.+.+. +.--+.++ +.+.+=.+.+ ..+=++..+|+.++.. .++-
T Consensus         2 s~~v~a~~~~vw~~l-~D~~~-l~~ciPG-~~~~e~~~-~~~~~~~~-v~vG~i~~~~-~g~~~~~~~~~~~~~~-~~~~   74 (140)
T PF06240_consen    2 SFEVPAPPEKVWAFL-SDPEN-LARCIPG-VESIEKVG-DEYKGKVK-VKVGPIKGTF-DGEVRITEIDPPESYT-LEFE   74 (140)
T ss_dssp             EEEECS-HHHHHHHH-T-HHH-HHHHSTT-EEEEEEEC-TEEEEEEE-EESCCCEEEE-EEEEEEEEEETTTEEE-EEEE
T ss_pred             cEEecCCHHHHHHHh-cCHHH-HHhhCCC-cEEeeecC-cEEEEEEE-EEeccEEEEE-EEEEEEEEcCCCcceE-eeee
Confidence            678999999999997 89996 7899998 88888754 31111111 2221111112 2344566677777653 4443


Q ss_pred             eccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC-CChHHHH-HHHHHHHHHHHHHHHHH
Q 047051           89 EGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL-LSEEDVR-NIKQGILTMVKAAERFL  153 (164)
Q Consensus        89 eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~k~ie~~l  153 (164)
                      ..+..  .-.+..+.+++...++++|.+.|+++++..+-.. .....++ .+++.+..+++.++..|
T Consensus        75 g~g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l  139 (140)
T PF06240_consen   75 GRGRG--GGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL  139 (140)
T ss_dssp             EEECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33322  2345566777777666669999999999876211 2222232 24445566666666544

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.73  E-value=4.7e-07  Score=67.75  Aligned_cols=131  Identities=15%  Similarity=0.190  Sum_probs=89.1

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      ..++..+..|++|+++||+++ .|+.+ +++|.|..       ..+-.+|....+.+... +. ....-++..+|+.. .
T Consensus        10 ~~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~-~~-~~~~~~v~e~~p~~-~   77 (157)
T cd08899          10 GATLRFERLLPAPIEDVWAAL-TDPER-LARWFAPG-------TGDLRVGGRVEFVMDDE-EG-PNATGTILACEPPR-L   77 (157)
T ss_pred             CeEEEEEEecCCCHHHHHHHH-cCHHH-HHhhcCCC-------CCCcccCceEEEEecCC-CC-CccceEEEEEcCCc-E
Confidence            356889999999999999997 79995 89999842       12223455555555431 11 24567777777664 5


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCch
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ  158 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~  158 (164)
                      +.|+...++      .....++.|++.+ ++|.++.+.++.+..      +......+....++..+.+|+-+.+-
T Consensus        78 l~~~~~~~~------~~~~~~~~l~~~~-~gT~v~~~~~~~~~~------~~~~~~~~GW~~~L~~Lk~~~e~~~~  140 (157)
T cd08899          78 LAFTWGEGG------GESEVRFELAPEG-DGTRLTLTHRLLDER------FGAGAVGAGWHLCLDVLEAALEGGPP  140 (157)
T ss_pred             EEEEecCCC------CCceEEEEEEEcC-CCEEEEEEEeccCch------hhhhhhcccHHHHHHHHHHHHcCCCC
Confidence            788875433      2335678888875 579998888886543      12233466778888999998887663

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.65  E-value=2.5e-06  Score=62.68  Aligned_cols=140  Identities=14%  Similarity=0.057  Sum_probs=80.7

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCcEEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      ++.+..+++|+++||+++ .|+.. +.+|++..--.+...+.|-.+|..-.+.+. ++ +....+.=++..+|+..+ +.
T Consensus         2 l~i~r~~~ap~e~Vw~a~-Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~-g~~~~~~g~~~ei~p~~~-l~   77 (142)
T cd07826           2 IVITREFDAPRELVFRAH-TDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPD-GEEMGFHGVYHEVTPPER-IV   77 (142)
T ss_pred             EEEEEEECCCHHHHHHHh-CCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCC-CCEecceEEEEEEcCCCE-EE
Confidence            566779999999999997 79994 777765421122222334334433344443 22 222223445666776544 55


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  155 (164)
                      |+-.-.+.   +-.....++.+.+.+ ++|+++.+..|....  .........+.++...++.+|++||.+
T Consensus        78 ~t~~~~~~---~~~~s~v~~~l~~~~-~gT~l~l~~~~~~~~--~~~~~~~~~~~~Gw~~~l~~L~~~l~~  142 (142)
T cd07826          78 QTEEFEGL---PDGVALETVTFTELG-GRTRLTATSRYPSKE--ARDGVLASGMEEGMEESYDRLDELLAS  142 (142)
T ss_pred             EEeEecCC---CCCceEEEEEEEECC-CCEEEEEEEEeCCHH--HHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            55322221   113456788999886 579999886653211  000011123567888999999999863

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=98.59  E-value=3.8e-07  Score=69.75  Aligned_cols=109  Identities=14%  Similarity=0.221  Sum_probs=86.5

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCcE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      ..++++++|+.|++.||..+ +|+.+ +|.|+.+ +.|+++.+.+-     -+|+.. ++...+ .++-+|+ -|..+..
T Consensus        70 i~v~~~V~I~kPae~vy~~W-~dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v-~Wea~it-~d~~~e~  139 (217)
T COG5637          70 IEVEVQVTIDKPAEQVYAYW-RDLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEV-EWEAEIT-KDIPGER  139 (217)
T ss_pred             eEEEEEEEeCChHHHHHHHH-Hhhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceE-EEeehhh-ccCCCcE
Confidence            46889999999999999998 89998 9999986 99999976541     345554 342343 5788888 6888999


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCC
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGD  127 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~  127 (164)
                      +.|+=++|.-    +.| ++.++|.+..+..|.|+.+++|.+-++
T Consensus       140 I~W~Sl~Ga~----v~N-sG~VrF~~~pg~~t~V~v~lsY~~Pgg  179 (217)
T COG5637         140 IQWESLPGAR----VEN-SGAVRFYDAPGDSTEVKVTLSYRPPGG  179 (217)
T ss_pred             EeeecCCCCc----CCC-CccEEeeeCCCCceEEEEEEEecCCcc
Confidence            9999888853    233 577999999877889999999998763

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.54  E-value=2.3e-05  Score=57.36  Aligned_cols=137  Identities=18%  Similarity=0.111  Sum_probs=79.4

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcc-eeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCcEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQV-ISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~-v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      +..+..+++|+++||+++ .|.. .+.+|+.+. --.+...+.|-.+|..-.+.+. .+ +......=++..+|+.++ +
T Consensus         2 ~~i~r~~~ap~e~Vw~a~-tdp~-~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~-g~~~~~~g~~~~~~p~~~-l   77 (143)
T cd08900           2 FTLERTYPAPPERVFAAW-SDPA-ARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKG-GPEITVEARYHDIVPDER-I   77 (143)
T ss_pred             EEEEEEeCCCHHHHHHHh-cCHH-HHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCC-CCEEeeeEEEEEecCCce-E
Confidence            456678999999999997 7999 478887430 1112222233223333333332 22 222233445666776555 6


Q ss_pred             EEEEE--eccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051           84 RYSIV--EGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        84 ~Y~i~--eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~  154 (164)
                      .|+-.  .++.   +......++.|.+.+ ++|.++.+...-...+.    +......+.-..++..|+++|.
T Consensus        78 ~~t~~~~~~~~---~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~l~  142 (143)
T cd08900          78 VYTYTMHIGGT---LLSASLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAALLDNLAAELE  142 (143)
T ss_pred             EEEEeeccCCc---cccceEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHHHHHHHHHHHh
Confidence            66642  2221   222345788888886 57999998876433211    1233346677888888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.54  E-value=3.7e-06  Score=60.20  Aligned_cols=134  Identities=13%  Similarity=0.039  Sum_probs=81.7

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +++.++.|++|+++||+++ .|+.. ++.|.++..  +   +++-.+|..-.+...+. .. ..+.=++..+++ .+.++
T Consensus         1 ~~~~~~~i~ap~e~Vw~~~-td~~~-~~~W~~~~~--~---~~~~~~G~~~~~~~~~~-~~-~~~~~~v~~~~~-~~~l~   70 (136)
T cd08893           1 KFVYVTYIRATPEKVWQAL-TDPEF-TRQYWGGTT--V---ESDWKVGSAFEYRRGDD-GT-VDVEGEVLESDP-PRRLV   70 (136)
T ss_pred             CeEEEEEecCCHHHHHHHH-cCchh-hhheecccc--c---ccCCcCCCeEEEEeCCC-cc-cccceEEEEecC-CCeEE
Confidence            4678999999999999997 89995 899987622  1   23323343323333321 11 124455666664 44477


Q ss_pred             EEEEecccc-ccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051           85 YSIVEGGIL-GFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        85 Y~i~eg~~~-~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~  154 (164)
                      |+...+... ..+-.....++.+++.++ +|+++.+.+..+.+     ++......+....+++.|+++|-
T Consensus        71 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~Lk~~~e  135 (136)
T cd08893          71 HTWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPG-----SPTLEGVSGGWPAILSSLKTLLE  135 (136)
T ss_pred             EEEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCc-----hhHHHhhhcCHHHHHHHHHHHhc
Confidence            776433221 012335677888888765 68777776654322     12234556778888999988874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.54  E-value=1.8e-05  Score=58.15  Aligned_cols=137  Identities=13%  Similarity=0.069  Sum_probs=79.8

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccC-cceeeEEEecCCCCcccEEEE--EeecC-----CcceeEEEEEEEEe
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALP-QVISSIDLLEGDGGVGTIKKF--NFTEA-----VKEFRYVKDRVEIM   76 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P-~~v~s~e~~eGdg~~G~vR~~--~~~~g-----~~~~~~~kErl~~~   76 (164)
                      ++..+..|++|+++||+++ .|+.. +.+|.+ .-+ .+...+.+-.+|-.-.+  ++.++     .+......=++..+
T Consensus         1 ~~~~~r~i~ap~e~Vw~a~-td~~~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v   77 (146)
T cd08895           1 TDRLHRVIAAPPERVYRAF-LDPDA-LAKWLPPDGM-TGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL   77 (146)
T ss_pred             CEEEEEEECCCHHHHHHHH-cCHHH-HhhcCCCCCe-EeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence            3566778999999999997 79995 788765 222 11111222122222222  22220     01112334467777


Q ss_pred             eCCCcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051           77 DNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        77 D~~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~  154 (164)
                      ++.++ +.|+..-.+.. .+ .....++.+++.+ ++|.++++...-+..      +......+.-..++..|++||-
T Consensus        78 ~p~~~-i~~~~~~~~~~-~~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~------~~~~~~~~GW~~~l~~L~~~le  145 (146)
T cd08895          78 VPNER-IVYTDVFDDPS-LS-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG------IPPEDCELGWQESLANLAALVE  145 (146)
T ss_pred             cCCCE-EEEEEEecCCC-CC-ceEEEEEEEEecC-CCEEEEEEEeCCCch------hhhhHHHHHHHHHHHHHHHHhc
Confidence            77765 77775322221 12 2446888998886 579999888743221      1122346788889999999875

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=98.52  E-value=3.1e-05  Score=59.50  Aligned_cols=145  Identities=12%  Similarity=0.083  Sum_probs=89.3

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecC--CcceeEEEEEEEEeeCCCc
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEA--VKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g--~~~~~~~kErl~~~D~~~~   81 (164)
                      ..+..+..+++|++++|+++ .|.+. .|+|.|. +.++++++..+.-..+-.+.+...  ..+...+..+-...+.++.
T Consensus        41 ~~~k~~~~i~~s~e~v~~vi-~d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~  117 (195)
T cd08876          41 KEFKAVAEVDASIEAFLALL-RDTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG  117 (195)
T ss_pred             EEEEEEEEEeCCHHHHHHHH-hhhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence            56788889999999999996 79995 8999996 888898885432112223333211  1111233322222332233


Q ss_pred             EEEEEEEeccc--c-cc---ceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHH
Q 047051           82 VFRYSIVEGGI--L-GF---KVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFL  153 (164)
Q Consensus        82 ~~~Y~i~eg~~--~-~~---~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l  153 (164)
                      .+...+...+.  . ..   ....+.+.+.++|.++++|.+.+...+++.+.  ++.-.+. .+.+....+++++++.+
T Consensus       118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~~  194 (195)
T cd08876         118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQL  194 (195)
T ss_pred             EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333333321  1 00   15677888999999988999999999999752  3333233 35556678888877654

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.50  E-value=7.5e-06  Score=59.75  Aligned_cols=134  Identities=13%  Similarity=0.089  Sum_probs=76.6

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccC-cceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCcEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALP-QVISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P-~~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      +..+..+++|+++||+++ .|+.. +.+|++ ..+.. ...+.|..+|..-.+.+. ++ +..-...=++..+++..+ +
T Consensus         2 l~~~r~i~ap~e~Vw~a~-t~p~~-l~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~-g~~~~~~g~v~e~~p~~~-l   76 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAW-TDPEH-LAQWWGPEGFTN-TTHEFDLRPGGRWRFVMHGPD-GTDYPNRIVFLEIEPPER-I   76 (139)
T ss_pred             EEEEEEeCCCHHHHHHHh-CCHHH-HhhccCcCCCcc-eEEEEEecCCCEEEEEEECCC-CCEecceEEEEEEcCCCE-E
Confidence            566789999999999997 79984 777763 32221 111223223333233332 22 211112346677777665 7


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHHh
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l~  154 (164)
                      .|+...++    +  ....++.|+|.+ ++|.++.+..|.....   -.... ..+.+....++..|++||.
T Consensus        77 ~~t~~~~~----~--~~~v~~~~~~~~-~gT~ltl~~~~~~~~~---~~~~~~~~~~~Gw~~~l~~L~~~l~  138 (139)
T cd08894          77 VYDHGSGP----P--RFRLTVTFEEQG-GKTRLTWRQVFPTAAE---RCEKIKFGAVEGNEQTLDRLAAYLA  138 (139)
T ss_pred             EEEeccCC----C--cEEEEEEEEECC-CCEEEEEEEEcCCHHH---HHHHHHhCHHHHHHHHHHHHHHHHh
Confidence            78764331    1  245788999876 6799998876532110   00011 1245567788888888763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.48  E-value=9.5e-06  Score=58.75  Aligned_cols=129  Identities=14%  Similarity=0.192  Sum_probs=76.6

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCccee-eEEEecCCCCcccEEEEEee--cCCcceeEEEEEEEEeeCCCc
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVIS-SIDLLEGDGGVGTIKKFNFT--EAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~-s~e~~eGdg~~G~vR~~~~~--~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ++..++.+++|+++||+++ .|... +.+|+++.-. .+...+.|-.+|..-.+.+.  +| +....+.=++..+++.++
T Consensus         1 ~~~~~~~~~ap~e~Vw~a~-td~e~-~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g-~~~~~~~g~~~ei~p~~~   77 (133)
T cd08897           1 KITVETTVDAPIEKVWEAW-TTPEH-ITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDG-SMGFDFEGTYTEVEPHKL   77 (133)
T ss_pred             CEEEEEEeCCCHHHHHHHh-CCHHH-HhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCC-CcccccceEEEEECCCCE
Confidence            4677889999999999997 79994 8888543100 01111233334444333332  22 111123445555666555


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~  154 (164)
                       +.|+..++         ...++.++|.+ ++|.++.+  +.+.+.     +......+.-..++..|++||.
T Consensus        78 -l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~-----~~~~~~~~GW~~~l~~L~~~le  132 (133)
T cd08897          78 -IEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENE-----NPVEMQRQGWQAILDNFKKYVE  132 (133)
T ss_pred             -EEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCC-----CcHHHHHHHHHHHHHHHHHHhh
Confidence             78886321         25789999976 57988875  433221     1123456788889999999884

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.42  E-value=2.2e-05  Score=57.68  Aligned_cols=134  Identities=12%  Similarity=0.026  Sum_probs=76.3

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcc---eeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCc
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQV---ISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~---v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~   81 (164)
                      +..+..+++|+++||+++ .|+.. +.+|++..   +..++   .|-.+|..-.+.+. ++ +..-...=++..+|+.++
T Consensus         2 l~i~r~i~a~~e~Vw~a~-t~pe~-~~~W~~p~~~~~~~~~---~d~~~GG~~~~~~~~~~-g~~~~~~g~v~~i~p~~~   75 (146)
T cd08896           2 LVLSRTIDAPRELVWRAW-TEPEL-LKQWFCPKPWTTEVAE---LDLRPGGAFRTVMRGPD-GEEFPNPGCFLEVVPGER   75 (146)
T ss_pred             eEEEEEeCCCHHHHHHHc-CCHHH-HhccCCCCCccceEEE---EEeecCcEEEEEEECCC-CCEecceEEEEEEeCCCE
Confidence            456789999999999997 79984 77776421   22222   22222222233332 22 221223456777887765


Q ss_pred             EEEEE--EEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-----HHHHHHHHHHHHHHHHHh
Q 047051           82 VFRYS--IVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-----NIKQGILTMVKAAERFLL  154 (164)
Q Consensus        82 ~~~Y~--i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~k~ie~~l~  154 (164)
                       +.|+  +.++... ..-.....++.|++.+ ++|+++.+..+.       .++..+     .+.+....++..|++||.
T Consensus        76 -l~~t~~~~~~~~~-~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~-------~~~~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          76 -LVFTDALTPGWRP-AEKPFMTAIITFEDEG-GGTRYTARARHW-------TEADRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             -EEEEEeecCCcCC-CCCCcEEEEEEEEecC-CcEEEEEEEEeC-------CHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence             6666  3222111 0111146789999875 579998875542       122221     135778889999999875


Q ss_pred             h
Q 047051          155 A  155 (164)
Q Consensus       155 ~  155 (164)
                      +
T Consensus       146 ~  146 (146)
T cd08896         146 S  146 (146)
T ss_pred             C
Confidence            3

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=98.35  E-value=1.3e-05  Score=59.46  Aligned_cols=111  Identities=16%  Similarity=0.259  Sum_probs=82.6

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +++++.-++.+|++++++ |.|... +|+++|. -.+..+.+.++ ...+-.++.+=. +=-++..-|.. +++..+.+.
T Consensus         3 ~~~~s~lv~y~a~~mF~L-V~dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k-~i~e~F~Trv~-~~~~~~~I~   76 (146)
T COG2867           3 QIERTALVPYSASQMFDL-VNDVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFK-GIRETFTTRVT-LKPTARSID   76 (146)
T ss_pred             eeEeeeeccCCHHHHHHH-HHHHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhh-heeeeeeeeee-ecCchhhhh
Confidence            578889999999999999 589996 9999997 44556667664 234555555422 11134444544 566666777


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG  126 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~  126 (164)
                      -++++|     |++...++|+++|.++++|.|+..++|+..+
T Consensus        77 ~~l~~G-----PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s  113 (146)
T COG2867          77 MKLIDG-----PFKYLKGGWQFTPLSEDACKVEFFLDFEFKS  113 (146)
T ss_pred             hhhhcC-----ChhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence            777777     6788999999999888899999999999886

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=7.9e-05  Score=55.49  Aligned_cols=140  Identities=14%  Similarity=0.095  Sum_probs=79.4

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      ..+++.+..|++|+++||+++ .|.. ++.+|+.+-=.+.++.-|   .+....+...++  +.....-+...+++..| 
T Consensus         7 ~~~~~~er~i~aP~e~Vf~A~-Tdpe-~l~~W~~~~~~~~d~r~g---g~~~~~~~~~~g--~~~~~~~~~~~v~p~~r-   78 (149)
T COG3832           7 DRTLEIERLIDAPPEKVFEAL-TDPE-LLARWFMPGGAEFDARTG---GGERVRFRGPDG--PVHSFEGEYLEVVPPER-   78 (149)
T ss_pred             CceEEEEEeecCCHHHHHHHh-cCHH-HHHhhcCCCCCccceecC---CceEEeeecCCC--CeeecceEEEEEcCCcE-
Confidence            457888999999999999997 7999 688887521001111111   122334444433  22345666777777665 


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH--HHHHHHHHHHHHHHHHh
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN--IKQGILTMVKAAERFLL  154 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~ie~~l~  154 (164)
                      |.|+-.-.+.- .+...-..++++++..+|+   .++..........+..+..+.  +.+....++..++++|.
T Consensus        79 Iv~tw~~~~~~-~~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~  148 (149)
T COG3832          79 IVFTWDFDEDG-EPFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE  148 (149)
T ss_pred             EEEEeccCCCC-CcccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence            56665433321 1334556788888876653   222223322222122222222  26678888888888774

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=98.27  E-value=7.5e-05  Score=55.04  Aligned_cols=138  Identities=8%  Similarity=-0.026  Sum_probs=76.3

Q ss_pred             EEEEEEecCCHHHHHHHHhcCccccccccc-Ccc------eeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeC
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKAL-PQV------ISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDN   78 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~-P~~------v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~   78 (164)
                      ++.++.|+||+++||+++ .| .  +.+|+ |..      ...|++.-..|  |..+ +...+|  . ....=++..+++
T Consensus         2 ~~~~~~i~Ap~e~Vw~a~-t~-~--l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~~~g--~-~~~~g~v~~v~p   71 (149)
T cd08891           2 VRKSVTVPAPPERAFEVF-TE-G--FGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIGEDG--T-ECEWGTVLAWEP   71 (149)
T ss_pred             eEEEEEecCCHHHHHHHH-Hh-c--hhhccCCCcccccCCCccEEEcccCC--cEEE-EecCCC--c-EeceEEEEEEcC
Confidence            678999999999999997 67 3  44554 431      13444411223  3333 222223  2 223446666777


Q ss_pred             CCcEEEEEEE-eccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC-CChHHHHHHHHHHHHHHHHHHHHHh
Q 047051           79 ENHVFRYSIV-EGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL-LSEEDVRNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        79 ~~~~~~Y~i~-eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~ie~~l~  154 (164)
                      .++ ++|+-. ..+....+-..-..++.|++.++++|+++.+.......... ..........+.-..++.+|+++|-
T Consensus        72 ~~~-l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~  148 (149)
T cd08891          72 PSR-LVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE  148 (149)
T ss_pred             CCE-EEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence            665 667643 11111001012368899999874679999888875443110 1111112245566778888888874

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=98.26  E-value=9.6e-05  Score=52.00  Aligned_cols=122  Identities=14%  Similarity=0.207  Sum_probs=75.3

Q ss_pred             cCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEEEEeccc
Q 047051           13 PIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGI   92 (164)
Q Consensus        13 ~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i~eg~~   92 (164)
                      +||+++||+++ .|... +.+|.+......+.  ..|  |..+... .+|  ..-...=++..+++..+ +.|+.--++.
T Consensus         1 ~ap~e~Vw~a~-t~~~~-~~~W~~~~~~~~~~--~~G--g~~~~~~-~~g--~~~~~~~~v~~~~p~~~-i~~~~~~~~~   70 (124)
T PF08327_consen    1 DAPPERVWEAL-TDPEG-LAQWFTTSEAEMDF--RPG--GSFRFMD-PDG--GEFGFDGTVLEVEPPER-IVFTWRMPDD   70 (124)
T ss_dssp             SSSHHHHHHHH-HSHHH-HHHHSEEEEEEEEC--STT--EEEEEEE-TTS--EEEEEEEEEEEEETTTE-EEEEEEEETS
T ss_pred             CcCHHHHHHHH-CCHhH-HhhccCCCcceeee--ecC--CEEEEEe-cCC--CCceeeEEEEEEeCCEE-EEEEEEccCC
Confidence            68999999997 79984 88893221222222  223  4444422 333  22234445787888776 7788543332


Q ss_pred             cccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH-HHHHHHHHHHHHHHHH
Q 047051           93 LGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN-IKQGILTMVKAAERFL  153 (164)
Q Consensus        93 ~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~l  153 (164)
                      .  +-.....++.|++ .+++|.++.+.+-.+      ..+.... ..+....++.+|++||
T Consensus        71 ~--~~~~~~v~~~~~~-~~~~T~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~L~~~l  123 (124)
T PF08327_consen   71 P--DGPESRVTFEFEE-EGGGTRLTLTHSGFP------DDDEEEEGMEQGWEQMLDRLKAYL  123 (124)
T ss_dssp             S--SCEEEEEEEEEEE-ETTEEEEEEEEEEEH------SHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             C--CCCceEEEEEEEE-cCCcEEEEEEEEcCC------ccHHHHHHHHHHHHHHHHHHHHHh
Confidence            1  2346678899999 566898888883332      2232333 6778888889988887

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.06  E-value=0.0001  Score=53.65  Aligned_cols=129  Identities=16%  Similarity=0.131  Sum_probs=77.3

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY   85 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   85 (164)
                      ...++.+++|+++||+++ .|+.. +.+|.+. -.+.++..|    |.+ .+.+... ++  .+.=++..+++. +.+.|
T Consensus         2 ~~~~~~i~ap~e~Vw~a~-t~p~~-l~~W~~~-~~~~~~~~G----g~~-~~~~~~~-~~--~~~g~~~~~~p~-~~l~~   69 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAF-VDPEI-TTKFWFT-GSSGRLEEG----KTV-TWDWEMY-GA--SVPVNVLEIEPN-KRIVI   69 (136)
T ss_pred             eeEEEEecCCHHHHHHHh-cCHHH-hcccccc-CCCccccCC----CEE-EEEEEcc-CC--ceEEEEEEEcCC-CEEEE
Confidence            467899999999999997 79985 7776443 223333222    333 4545432 11  123355667655 44778


Q ss_pred             EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH---HHHHHHHHHHHHHHHHHHhhC
Q 047051           86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV---RNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      +-..++    +  .-..+++|++.++|+|.+..+...-+..    .++..   ..+.+....++..+++||...
T Consensus        70 ~w~~~~----~--~s~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~g  133 (136)
T cd08901          70 EWGDPG----E--PTTVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEHG  133 (136)
T ss_pred             EecCCC----C--CEEEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            764321    1  2347889999875689988886643321    12111   113356678888898888654

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=98.06  E-value=0.00039  Score=49.99  Aligned_cols=122  Identities=14%  Similarity=0.111  Sum_probs=71.5

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY   85 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   85 (164)
                      ++.+..+++|+++||+++ .|... +.+|+.. ..+.+...  |  |..+   +.+|     .+.=++..+++..+ ++|
T Consensus         2 i~~~r~i~ap~e~Vw~A~-T~~e~-l~~W~~~-~~~~d~~~--G--G~~~---~~~g-----~~~g~~~~i~p~~~-l~~   65 (126)
T cd08892           2 ISLTETFQVPAEELYEAL-TDEER-VQAFTRS-PAKVDAKV--G--GKFS---LFGG-----NITGEFVELVPGKK-IVQ   65 (126)
T ss_pred             eEEEEEECCCHHHHHHHH-CCHHH-HHhhcCC-CceecCCC--C--CEEE---EeCC-----ceEEEEEEEcCCCE-EEE
Confidence            567889999999999997 79984 7888753 33443322  2  3333   3334     13335666765544 555


Q ss_pred             EEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHH-HHHHHHHHH
Q 047051           86 SIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILT-MVKAAERFL  153 (164)
Q Consensus        86 ~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~ie~~l  153 (164)
                      +---.+.. .. ..-..++.+++. +++|.++.+....+..       ......+.-.. ++..|.++|
T Consensus        66 ~w~~~~~~-~~-~~s~v~~~l~~~-~~gT~ltl~~~g~~~~-------~~~~~~~GW~~~~~~~l~~~~  124 (126)
T cd08892          66 KWRFKSWP-EG-HYSTVTLTFTEK-DDETELKLTQTGVPAG-------EEERTREGWERYYFESIKQTF  124 (126)
T ss_pred             EEEcCCCC-CC-CcEEEEEEEEEC-CCCEEEEEEEECCCCc-------hHHHHHhhHHHHHHHHHHHHh
Confidence            54322210 11 234578888887 4579888777755432       12223455553 667777765

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=97.74  E-value=0.0047  Score=45.85  Aligned_cols=121  Identities=17%  Similarity=0.289  Sum_probs=72.0

Q ss_pred             EEEEEEecCC-------HHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeC
Q 047051            6 IVGEYKSPIA-------VERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDN   78 (164)
Q Consensus         6 ~~~e~~i~ap-------a~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~   78 (164)
                      +++.++||-|       .+++|+-|.....+ -..++|+ +.+|++++.++. -..|.++|++.     .++|++. +++
T Consensus         2 ~~~tvpIN~p~~~p~LTr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~~~-~l~Rel~f~~~-----~v~e~vt-~~~   72 (141)
T cd08863           2 FEHTVPINDPGNIPTLTRAQLWRGLVLRARE-PQLFVPG-LDRCEVLSESGT-VLERELTFGPA-----KIRETVT-LEP   72 (141)
T ss_pred             ccEEEecCCCCCCCccCHHHHHhHHHhhhCC-chhcccc-cceEEEEecCCC-EEEEEEEECCc-----eEEEEEE-ecC
Confidence            4566677654       46999988766665 2346775 899999986642 45699999876     7999998 554


Q ss_pred             CCcEEEEEEEe-ccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHH
Q 047051           79 ENHVFRYSIVE-GGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKA  148 (164)
Q Consensus        79 ~~~~~~Y~i~e-g~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  148 (164)
                      .. ++.|.+-. |+         +.++.++...+|  -+-.+..|+.......+++ .++..+...++.+.
T Consensus        73 ~~-~v~f~~~~~g~---------~l~~~iee~~~g--~L~lrf~ye~~~p~~~~~e-~~~~~~~~~~a~~~  130 (141)
T cd08863          73 PS-RVHFLQADAGG---------TLTNTIEEPEDG--ALYLRFVYETTLPEVAEEE-AKAYQEIVKQAYKE  130 (141)
T ss_pred             Cc-EEEEEecCCCC---------eEEEEeccCCCC--cEEEEEEEEecCCCcCchH-HHHHHHHHHHHHHH
Confidence            44 47788765 22         123333322233  3556667776643322232 32334444444443

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=97.64  E-value=0.0017  Score=47.28  Aligned_cols=123  Identities=16%  Similarity=0.145  Sum_probs=66.2

Q ss_pred             ecCCHHHHHHHHhcCcccccccc-cCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEEEEec
Q 047051           12 SPIAVERLWKALICDAHNFMPKA-LPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG   90 (164)
Q Consensus        12 i~apa~~vW~~~~~d~~~~~p~~-~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i~eg   90 (164)
                      +++|+++||+++ .|+. .+.+| .+. ...++...  |  |.-+.+   .+     .+.=+...+|+..+ +.|+---.
T Consensus         1 f~ap~e~Vw~A~-Tdp~-~l~~w~~~~-~~~~d~~~--G--G~f~~~---~~-----~~~G~~~ev~pp~r-lv~tw~~~   64 (132)
T PTZ00220          1 FYVPPEVLYNAF-LDAY-TLTRLSLGS-PAEMDAKV--G--GKFSLF---NG-----SVEGEFTELEKPKK-IVQKWRFR   64 (132)
T ss_pred             CCCCHHHHHHHH-cCHH-HHHHHhcCC-CccccCCc--C--CEEEEe---cC-----ceEEEEEEEcCCCE-EEEEEecC
Confidence            579999999997 7998 47777 432 21222211  2  333322   23     12235555666664 44443212


Q ss_pred             cccccceeEEEEEEEEeeCCCCceeEEEEEE-EEEcCCCCCChHHHHHHHHHHHH-HHHHHHHHH
Q 047051           91 GILGFKVNSYVADVTFTSSSDGDCFAKLKIE-YESLGDSLLSEEDVRNIKQGILT-MVKAAERFL  153 (164)
Q Consensus        91 ~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~k~ie~~l  153 (164)
                      +.. .... -..++.+++.++|+|.++.+.. +......... .......+.-.. ++..|+++|
T Consensus        65 ~~~-~~~~-s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~-~~~~~~~~GW~~~~ld~L~~~l  126 (132)
T PTZ00220         65 DWE-EDVY-SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNG-GCLERCRNGWTQNFLDRFEKIL  126 (132)
T ss_pred             CCC-CCCc-eEEEEEEEeCCCCcEEEEEEEecCccccccCCC-chhhHHHhChHHHHHHHHHHHh
Confidence            111 1111 3588899997667899998888 4332211100 001223556666 588888876

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=97.47  E-value=0.025  Score=45.48  Aligned_cols=148  Identities=14%  Similarity=0.052  Sum_probs=89.9

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeec--CCcceeEEEEEEEE--eeC
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTE--AVKEFRYVKDRVEI--MDN   78 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~--g~~~~~~~kErl~~--~D~   78 (164)
                      ..+..+..+++|++++|.++ .|..+ .++|.++ ..++++++.-+ ..+-++ +.++.  -..+-..+.-+-..  .++
T Consensus        77 l~fk~e~~vd~s~~~v~dlL-~D~~~-R~~WD~~-~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~  152 (235)
T cd08873          77 LSFCVELKVQTCASDAFDLL-SDPFK-RPEWDPH-GRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATD  152 (235)
T ss_pred             eEEEEEEEecCCHHHHHHHH-hCcch-hhhhhhc-ccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEeccCC
Confidence            35778889999999999997 79996 8999986 88999887322 223233 33321  11122233322221  222


Q ss_pred             CC-cEEEEEEEecc--ccc---cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 047051           79 EN-HVFRYSIVEGG--ILG---FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERF  152 (164)
Q Consensus        79 ~~-~~~~Y~i~eg~--~~~---~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~  152 (164)
                      .. .++..+-+.-+  +..   .-...+.+-+.+.|.++++|.+.+....+|.--.=.. ..+.-.-..+...|.+-++|
T Consensus       153 ~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~-~~~~~~~~~~~~~~~~~~~~  231 (235)
T cd08873         153 GDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVT-CNLAGLSALYCRTFHCCEQF  231 (235)
T ss_pred             CCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceee-ecchhhhHHHHHHHHHHHHH
Confidence            22 33333333311  100   1356788999999999889999999998886311111 11222345677888888888


Q ss_pred             HhhC
Q 047051          153 LLAN  156 (164)
Q Consensus       153 l~~~  156 (164)
                      |..|
T Consensus       232 ~~~~  235 (235)
T cd08873         232 LVTN  235 (235)
T ss_pred             hccC
Confidence            8764

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=97.28  E-value=0.034  Score=41.61  Aligned_cols=70  Identities=19%  Similarity=0.276  Sum_probs=41.7

Q ss_pred             EEEEEEecCCHH--------HHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEee
Q 047051            6 IVGEYKSPIAVE--------RLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMD   77 (164)
Q Consensus         6 ~~~e~~i~apa~--------~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D   77 (164)
                      ++++++||-|.+        +||+-|.....+ -..++| .+.+|++++-. +..-.|.++|++     ..++|++. +.
T Consensus         2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg~-----~~v~E~v~-~~   72 (149)
T PF08982_consen    2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFGG-----ATVRERVT-LY   72 (149)
T ss_dssp             EEEEEE------------HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEETT-----EEEEEEEE-EE
T ss_pred             ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEECC-----cEEEEEEE-Ee
Confidence            567777776655        699988655554 234677 48999998754 336789999933     37999998 55


Q ss_pred             CCCcEEEE
Q 047051           78 NENHVFRY   85 (164)
Q Consensus        78 ~~~~~~~Y   85 (164)
                      +.. ++.|
T Consensus        73 ~~~-~V~f   79 (149)
T PF08982_consen   73 PPE-RVDF   79 (149)
T ss_dssp             TTT-EEEE
T ss_pred             CCc-EEEE
Confidence            444 4667

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=97.24  E-value=0.063  Score=42.19  Aligned_cols=125  Identities=11%  Similarity=0.059  Sum_probs=76.6

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeec--CC-cceeEEEEEEEEeeCCC
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTE--AV-KEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~--g~-~~~~~~kErl~~~D~~~   80 (164)
                      .+..+..+++|++++|+++ .|..+ .++|.+ .++++++++.-+ ...-++..+-.+  .. .+-..+.-+-...+...
T Consensus        46 ~~~ge~~v~as~~~v~~ll-~D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~  122 (205)
T cd08874          46 GFLGAGVIKAPLATVWKAV-KDPRT-RFLYDT-MIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGEL  122 (205)
T ss_pred             eEEEEEEEcCCHHHHHHHH-hCcch-hhhhHH-hhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCc
Confidence            4567889999999999997 79996 899998 499999987432 222233322111  20 11123333322223333


Q ss_pred             cEEEEEEEecccc---c---cceeEEEEEEEEeeC---CCCceeEEEEEEEEEcCCCCCCh
Q 047051           81 HVFRYSIVEGGIL---G---FKVNSYVADVTFTSS---SDGDCFAKLKIEYESLGDSLLSE  132 (164)
Q Consensus        81 ~~~~Y~i~eg~~~---~---~~~~~y~~ti~v~~~---~dg~s~v~w~~~~~~~~~~~~~~  132 (164)
                      ..+.-+-+.-+..   .   .-...+.+-+.++|.   ++|.|.+......+|.+++.|..
T Consensus       123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~  183 (205)
T cd08874         123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQ  183 (205)
T ss_pred             EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHH
Confidence            3332332222111   0   134567888999998   77789999999999996565443

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=97.22  E-value=0.029  Score=44.00  Aligned_cols=146  Identities=10%  Similarity=0.095  Sum_probs=86.7

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeec-C--CcceeEEEEEEEEeeCCC
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTE-A--VKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~-g--~~~~~~~kErl~~~D~~~   80 (164)
                      .+..+..+++|+++++..+..|..+ .++|.+. +.++++++--+ .--.++.+..+. +  +.+-..+.-|....+..+
T Consensus        50 ~~k~e~~i~~~~~~l~~~l~~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~  127 (209)
T cd08905          50 VFRLEVVVDQPLDNLYSELVDRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST  127 (209)
T ss_pred             EEEEEEEecCCHHHHHHHHHhchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence            4677889999999999554468885 8999986 77877776422 111123322221 1  112233333333334444


Q ss_pred             cEEEEEEEeccccc-----cceeEEEEEEEEeeCCC--CceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHH
Q 047051           81 HVFRYSIVEGGILG-----FKVNSYVADVTFTSSSD--GDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERF  152 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~-----~~~~~y~~ti~v~~~~d--g~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~  152 (164)
                      ..+.....+-+.+.     .-...+.+-+.+.|.++  ++|.+.|.+-.+|++.  +|.--+ ..+.+.....++.+.++
T Consensus       128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~--iP~~lvN~~~~~~~~~~~~~Lr~~  205 (209)
T cd08905         128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW--LPKSIINQVLSQTQVDFANHLRQR  205 (209)
T ss_pred             EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC--CCHHHHHHHhHHhHHHHHHHHHHH
Confidence            33222222222210     12456678888999865  7899999999999974  233223 34566777888888877


Q ss_pred             Hh
Q 047051          153 LL  154 (164)
Q Consensus       153 l~  154 (164)
                      +.
T Consensus       206 ~~  207 (209)
T cd08905         206 MA  207 (209)
T ss_pred             Hh
Confidence            75

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.094  Score=38.68  Aligned_cols=140  Identities=16%  Similarity=0.129  Sum_probs=86.1

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEee-cCCcceeEEEEEEEE--eeCC
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFT-EAVKEFRYVKDRVEI--MDNE   79 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~-~g~~~~~~~kErl~~--~D~~   79 (164)
                      +++.+...|++|.+.||+.. ...++ +..+-|..+  +-.-+|+. +.|+--.+.+. -|.++.-.++-|++.  .|+.
T Consensus         2 ~tF~~~~~i~aP~E~VWafh-srpd~-lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~   77 (153)
T COG4276           2 GTFVYRTTITAPHEMVWAFH-SRPDA-LQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG   77 (153)
T ss_pred             cceEEeeEecCCHHHHhhhh-cCccH-HHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence            46778889999999999996 67785 667777543  22223432 33433333222 232333578888887  6665


Q ss_pred             CcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 047051           80 NHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERF  152 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~  152 (164)
                      .+ ++=..+.|+.   |.-+..-+-++.+.++ +|++.=++.|+...+....-=..+-..-....||+.-+..
T Consensus        78 ~~-FtDv~i~gPf---p~~~WrHtH~F~~egg-~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~  145 (153)
T COG4276          78 SR-FTDVCITGPF---PALNWRHTHNFVDEGG-GTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHST  145 (153)
T ss_pred             ce-eeeeeecCCc---cceeeEEEeeeecCCC-cEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHH
Confidence            54 5555666664   3336888889988764 7999999999987653322211221233445666654443

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=96.81  E-value=0.15  Score=41.12  Aligned_cols=145  Identities=14%  Similarity=0.061  Sum_probs=82.9

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeecC---CcceeEEEEEEEEeeCCC
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTEA---VKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~g---~~~~~~~kErl~~~D~~~   80 (164)
                      .+..+..+++|+++++.++ .|..+ .++|.++ +.++++++.-+ .- .+..++.++-   ..+-..+.-+-...+.++
T Consensus        82 ~fK~e~~vd~s~e~v~~lL-~D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~  157 (240)
T cd08913          82 SFKVEMVVHVDAAQAFLLL-SDLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDN  157 (240)
T ss_pred             EEEEEEEEcCCHHHHHHHH-hChhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence            4667889999999999997 79996 8999986 88999886422 21 2444443321   111122222211122222


Q ss_pred             c---EEEEEEEecccc--c---cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-H-HHHHHHHHHHHHH
Q 047051           81 H---VFRYSIVEGGIL--G---FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-N-IKQGILTMVKAAE  150 (164)
Q Consensus        81 ~---~~~Y~i~eg~~~--~---~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~k~ie  150 (164)
                      .   .+..+.+.-+-.  .   .-..++.+-+.+.|.+++.|.+.+...-+|  | .++.-... . ....+...+.+-.
T Consensus       158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G-~LP~~~~N~~~~~~p~~~~~~~~~  234 (240)
T cd08913         158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--G-VLPYISTDIAGLSSEFYSTFSACS  234 (240)
T ss_pred             CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--c-cccHHHhhhhhhccchhHHHHHHH
Confidence            2   133333332221  0   125567788999999888999988776665  3 33332121 1 2224556666666


Q ss_pred             HHHhhC
Q 047051          151 RFLLAN  156 (164)
Q Consensus       151 ~~l~~~  156 (164)
                      +||+++
T Consensus       235 ~~~~~~  240 (240)
T cd08913         235 QFLLDN  240 (240)
T ss_pred             HHhhcC
Confidence            666653

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=96.74  E-value=0.09  Score=39.40  Aligned_cols=110  Identities=16%  Similarity=0.249  Sum_probs=64.1

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccC---c---ceeeEEEecCCCCcccEEE-EEeec-CC--------cceeEE
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALP---Q---VISSIDLLEGDGGVGTIKK-FNFTE-AV--------KEFRYV   69 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P---~---~v~s~e~~eGdg~~G~vR~-~~~~~-g~--------~~~~~~   69 (164)
                      ++++.++++|+|+||++| .|.. .+..-+.   .   -+.+++. +|+| . +++. -.++. ..        +..-.+
T Consensus         1 f~~~~~~~~~~~~v~~~~-~d~~-y~~~r~~~~g~~~~~~~~~~~-~~~g-~-~v~~~~~v~~~~lP~~~~k~v~~~l~v   75 (159)
T PF10698_consen    1 FEHSVEYPAPVERVWAAF-TDED-YWEARCAALGADNAEVESFEV-DGDG-V-RVTVRQTVPADKLPSAARKFVGGDLRV   75 (159)
T ss_pred             CeEEEEcCCCHHHHHHHH-cCHH-HHHHHHHHcCCCCceEEEEEE-cCCe-E-EEEEEEecChhhCCHHHHHhcCCCeEE
Confidence            367889999999999997 6876 3333221   1   2334433 3443 1 1111 11211 11        111112


Q ss_pred             --EEEEEEeeCCCcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEc
Q 047051           70 --KDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESL  125 (164)
Q Consensus        70 --kErl~~~D~~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~  125 (164)
                        .|+-...++..++.+|++--.+   .| -+..+++.+.|.+ ++|++.++.+.+..
T Consensus        76 ~~~e~w~~~~~g~~~g~~~~~~~G---~P-~~~~G~~~L~~~~-~gt~~~~~g~v~v~  128 (159)
T PF10698_consen   76 TRTETWTPLDDGRRTGTFTVSIPG---AP-VSISGTMRLRPDG-GGTRLTVEGEVKVK  128 (159)
T ss_pred             EEEEEEecCCCCeEEEEEEEEecC---ce-EEEEEEEEEecCC-CCEEEEEEEEEEEE
Confidence              2333333778888888864322   24 3789999999954 47999999998875

The function is not known.

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=96.66  E-value=0.22  Score=38.94  Aligned_cols=146  Identities=11%  Similarity=0.038  Sum_probs=84.2

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee---cCCcceeEEE--EEEEEee
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT---EAVKEFRYVK--DRVEIMD   77 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~---~g~~~~~~~k--Erl~~~D   77 (164)
                      ..++..+..+++|++.+..++ .|.+ ..++|.|... +.+.++..+.--.+-.+.+.   +-+.. ..+-  -.++.++
T Consensus        45 ~~~~k~e~~i~~~~~~~~~vl-~d~~-~~~~W~p~~~-~~~~l~~~~~~~~v~y~~~~~PwPv~~R-D~v~~~~~~~~~~  120 (215)
T cd08877          45 LLSLRMEGEIDGPLFNLLALL-NEVE-LYKTWVPFCI-RSKKVKQLGRADKVCYLRVDLPWPLSNR-EAVFRGFGVDRLE  120 (215)
T ss_pred             EEEEEEEEEecCChhHeEEEE-ehhh-hHhhhcccce-eeEEEeecCCceEEEEEEEeCceEecce-EEEEEEEEEeeec
Confidence            356778889999999999996 7998 6999999754 44444433211122222221   11111 1111  1122232


Q ss_pred             CCCcEEEE--EEEecc----------cccc-----ceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHH
Q 047051           78 NENHVFRY--SIVEGG----------ILGF-----KVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIK  139 (164)
Q Consensus        78 ~~~~~~~Y--~i~eg~----------~~~~-----~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~  139 (164)
                       ++..+..  +-+..+          ....     ....+.+-+.++|.++++|.+++....+|.+.- +|.-.+. .++
T Consensus       121 -~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~-IP~~liN~~~k  198 (215)
T cd08877         121 -ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSL-VPKSLLNFVAR  198 (215)
T ss_pred             -cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCccc-CCHHHHHHHHH
Confidence             3333322  211110          1101     246778889999999999999999998887642 3332232 366


Q ss_pred             HHHHHHHHHHHHHHh
Q 047051          140 QGILTMVKAAERFLL  154 (164)
Q Consensus       140 ~~~~~~~k~ie~~l~  154 (164)
                      +....++.+|.+.+.
T Consensus       199 ~~~~~~~~~l~k~~~  213 (215)
T cd08877         199 KFAGLLFEKIQKAAK  213 (215)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            677788888877654

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=96.22  E-value=0.41  Score=37.20  Aligned_cols=146  Identities=10%  Similarity=0.028  Sum_probs=82.2

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeec--C-CcceeEEEEEEEEeeCCCc
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTE--A-VKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~--g-~~~~~~~kErl~~~D~~~~   81 (164)
                      +..+..+++|+++++..+..|.+. .++|.+. +..+++++.- +.---+.......  . ..+-..+--|....++...
T Consensus        50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~  127 (208)
T cd08868          50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY  127 (208)
T ss_pred             EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence            667889999999999754468885 8999986 6677776542 2111122222111  1 0111223223322334333


Q ss_pred             EEEEEEEecccc--c---cceeEEEEEEEEeeCCC--CceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHH
Q 047051           82 VFRYSIVEGGIL--G---FKVNSYVADVTFTSSSD--GDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFL  153 (164)
Q Consensus        82 ~~~Y~i~eg~~~--~---~~~~~y~~ti~v~~~~d--g~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l  153 (164)
                      .+...-++-+..  .   .-...+.+.+.++|.++  ++|.+.|....+|.+.. |.- -+ ..+......+++.+.+++
T Consensus       128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i-P~~-lvN~~~~~~~~~~~~~Lr~~~  205 (208)
T cd08868         128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL-PQY-LVDQALASVLLDFMKHLRKRI  205 (208)
T ss_pred             EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC-cce-eeehhhHHHHHHHHHHHHHHH
Confidence            333332331111  0   12345567788898864  57999999999998632 121 12 234566677888888776


Q ss_pred             hh
Q 047051          154 LA  155 (164)
Q Consensus       154 ~~  155 (164)
                      .+
T Consensus       206 ~~  207 (208)
T cd08868         206 AT  207 (208)
T ss_pred             hh
Confidence            53

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=96.12  E-value=0.47  Score=36.97  Aligned_cols=145  Identities=15%  Similarity=0.078  Sum_probs=84.5

Q ss_pred             EEEEEEEEe-cCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCC--cccEEE-EEee-cCCcceeEEEEEEEEee-
Q 047051            4 GSIVGEYKS-PIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGG--VGTIKK-FNFT-EAVKEFRYVKDRVEIMD-   77 (164)
Q Consensus         4 ~~~~~e~~i-~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~--~G~vR~-~~~~-~g~~~~~~~kErl~~~D-   77 (164)
                      ..+..+..+ ++|++.+.+++ .|... .++|.+. +.++++++-++.  ...++. +.++ +- .+-..+--|..-.| 
T Consensus        50 ~~~k~~~~~~~~s~~~~~~~l-~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~  125 (209)
T cd08870          50 YEYLVRGVFEDCTPELLRDFY-WDDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPL-SDREYVIARRLWESD  125 (209)
T ss_pred             eEEEEEEEEcCCCHHHHHHHH-cChhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcC-CCceEEEEEEEEEcC
Confidence            346677788 67999999997 79884 8999986 556677664431  222222 1111 11 11133433433344 


Q ss_pred             CCCcEEEEEEEecccc----ccceeEEEEEEEEeeC--CCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHH
Q 047051           78 NENHVFRYSIVEGGIL----GFKVNSYVADVTFTSS--SDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAE  150 (164)
Q Consensus        78 ~~~~~~~Y~i~eg~~~----~~~~~~y~~ti~v~~~--~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie  150 (164)
                      +....+..+-+.-+..    ...+..|.+.+.+.|.  ++++|.+.++.--+|.+.  +|.--+. .+..+.-++++.|.
T Consensus       126 ~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~  203 (209)
T cd08870         126 DRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLE  203 (209)
T ss_pred             CCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHH
Confidence            3333333322222111    0247789999999998  667888888888877442  4443332 35566677778777


Q ss_pred             HHHh
Q 047051          151 RFLL  154 (164)
Q Consensus       151 ~~l~  154 (164)
                      +.+.
T Consensus       204 ~a~~  207 (209)
T cd08870         204 NALR  207 (209)
T ss_pred             HHHh
Confidence            7664

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=95.80  E-value=0.69  Score=36.27  Aligned_cols=143  Identities=10%  Similarity=0.041  Sum_probs=79.7

Q ss_pred             EEEEEEEecCCHHHHH-HHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeec--C-CcceeEEEEEEEEeeCC
Q 047051            5 SIVGEYKSPIAVERLW-KALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTE--A-VKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW-~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~--g-~~~~~~~kErl~~~D~~   79 (164)
                      .+..+..+++|++++| .++ .|..+ .++|.+. +.++++++.-+ .---++.++.+.  + ..+-..+.-|-..-+.+
T Consensus        50 ~fk~~~~v~~~~~~l~~~ll-~D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~  126 (209)
T cd08906          50 TFILKAFMQCPAELVYQEVI-LQPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD  126 (209)
T ss_pred             EEEEEEEEcCCHHHHHHHHH-hChhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence            4678889999999998 565 79996 8999986 77888876422 101112232221  1 11223333343333333


Q ss_pred             Cc-EEEEEEEeccccccceeEE-------EEEEEEee-CCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHH
Q 047051           80 NH-VFRYSIVEGGILGFKVNSY-------VADVTFTS-SSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAA  149 (164)
Q Consensus        80 ~~-~~~Y~i~eg~~~~~~~~~y-------~~ti~v~~-~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~i  149 (164)
                      .. .+..++. -+.+ .+.++|       .+-+...+ .++++|.+.|..-.+|.+.  +|.--+ ..+.+.....+..+
T Consensus       127 ~~i~~~~sv~-~~~~-P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~--lP~~lvN~~~~~~~~~~~~~L  202 (209)
T cd08906         127 RYVSAGISTT-HSHK-PPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR--LPRYLIHQSLAATMFEFASHL  202 (209)
T ss_pred             cEEEEEEEEe-cCCC-CCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC--CCHHHHHHHHHHHHHHHHHHH
Confidence            32 2222222 2211 122222       23333333 5667899999999999973  233222 33566667777777


Q ss_pred             HHHHh
Q 047051          150 ERFLL  154 (164)
Q Consensus       150 e~~l~  154 (164)
                      .+++.
T Consensus       203 R~~~~  207 (209)
T cd08906         203 RQRIR  207 (209)
T ss_pred             HHHHh
Confidence            77664

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=95.46  E-value=1.1  Score=36.13  Aligned_cols=117  Identities=12%  Similarity=-0.010  Sum_probs=68.6

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeec--CCcceeEEEEEEEE-ee-CC
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTE--AVKEFRYVKDRVEI-MD-NE   79 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~--g~~~~~~~kErl~~-~D-~~   79 (164)
                      ..+..+..+++|+++++.+| .|..+ .++|.++ ..++++++.-+.---+..+.-.+  ...+-..+..+-.. .. +.
T Consensus        78 l~fk~e~~vdvs~~~l~~LL-~D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg  154 (236)
T cd08914          78 LSVWVEKHVKRPAHLAYRLL-SDFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDG  154 (236)
T ss_pred             EEEEEEEEEcCCHHHHHHHH-hChhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence            46788889999999999997 79996 8999986 77888876422101255544322  11111222221111 12 22


Q ss_pred             C-cEEEEEEEec-ccc-c---cceeE-EEEEEEEeeCCCCceeEEEEEEEEE
Q 047051           80 N-HVFRYSIVEG-GIL-G---FKVNS-YVADVTFTSSSDGDCFAKLKIEYES  124 (164)
Q Consensus        80 ~-~~~~Y~i~eg-~~~-~---~~~~~-y~~ti~v~~~~dg~s~v~w~~~~~~  124 (164)
                      + ..+.-+-+.. -.+ .   ..... ..|- .+.|.++++|.+.+....+|
T Consensus       155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP  205 (236)
T cd08914         155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA  205 (236)
T ss_pred             CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence            2 3332222222 111 0   12344 4444 78999888999999999998

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=95.45  E-value=0.94  Score=35.39  Aligned_cols=143  Identities=10%  Similarity=0.034  Sum_probs=79.5

Q ss_pred             EEEEEEecCCHHHHHHHHhcCccc-ccccccCcceeeEEEecC-CCCcccEEEEEee-c-C--CcceeEEEEEE-EEeeC
Q 047051            6 IVGEYKSPIAVERLWKALICDAHN-FMPKALPQVISSIDLLEG-DGGVGTIKKFNFT-E-A--VKEFRYVKDRV-EIMDN   78 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~-~~p~~~P~~v~s~e~~eG-dg~~G~vR~~~~~-~-g--~~~~~~~kErl-~~~D~   78 (164)
                      +..+..++++++++++.+ .|..+ .-++|.+. +.++++++- |+...-++. ..+ . +  ..+-..+.-|. ...++
T Consensus        48 ~k~e~~i~~s~~~~~~~l-~d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d  124 (208)
T cd08903          48 YKGEGIVYATLEQVWDCL-KPAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED  124 (208)
T ss_pred             EEEEEEecCCHHHHHHHH-Hhccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence            678889999999999997 56543 12799985 778888774 222122222 222 1 0  11212222222 22334


Q ss_pred             CCcEEEEEEEecccccccee------E--EEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHH
Q 047051           79 ENHVFRYSIVEGGILGFKVN------S--YVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAA  149 (164)
Q Consensus        79 ~~~~~~Y~i~eg~~~~~~~~------~--y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~i  149 (164)
                      ....+.++.++-+.. .+-.      .  ..+.++..|.++++|.++|.+..+|++..  |.--+ +.+.+.....++.+
T Consensus       125 ~~i~i~~~sv~h~~~-P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~~~L  201 (208)
T cd08903         125 GTISSNATNVEHPLC-PPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYL--PQTVVDSFFPASMAEFYNNL  201 (208)
T ss_pred             ceEEEeEEeccCCCC-CCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCc--CHHHHHHHhhHHHHHHHHHH
Confidence            444444434443221 1111      1  23445555556678999999999998533  33223 33556667777888


Q ss_pred             HHHHh
Q 047051          150 ERFLL  154 (164)
Q Consensus       150 e~~l~  154 (164)
                      .++|.
T Consensus       202 r~~~~  206 (208)
T cd08903         202 TKAVK  206 (208)
T ss_pred             HHHHh
Confidence            77764

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=95.42  E-value=0.76  Score=34.17  Aligned_cols=144  Identities=13%  Similarity=0.087  Sum_probs=79.9

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecC--CcceeEEEEEEEEeeCCCc
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEA--VKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g--~~~~~~~kErl~~~D~~~~   81 (164)
                      ..+..+..+++|++++|.++ .|... .++|.|. +.++++++-....-.+....+...  ..+-..+--+-...+.++.
T Consensus        39 ~~~k~~~~i~~~~~~v~~~l-~d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~  115 (193)
T cd00177          39 KLLKAEGVIPASPEQVFELL-MDIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT  115 (193)
T ss_pred             eeEEEEEEECCCHHHHHHHH-hCCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence            45667889999999999997 68874 7899985 778888875332123444444322  1111222222222233222


Q ss_pred             -EEEEEEEecccc--c-c--ceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHH
Q 047051           82 -VFRYSIVEGGIL--G-F--KVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERF  152 (164)
Q Consensus        82 -~~~Y~i~eg~~~--~-~--~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~  152 (164)
                       .+...=++.+..  . .  ....+.+-+.++|.++++|.+.+....++.+..  ++--+. .+.+....+++.+..+
T Consensus       116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i--P~~~~~~~~~~~~~~~~~~~~~~  191 (193)
T cd00177         116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI--PKSLVNSAAKKQLASFLKDLRKA  191 (193)
T ss_pred             EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCc--cHHHHHhhhhhccHHHHHHHHHh
Confidence             222222222101  0 1  122334567789998889999999999998732  232222 2444555555555443

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=95.26  E-value=1.1  Score=35.10  Aligned_cols=151  Identities=12%  Similarity=0.032  Sum_probs=84.3

Q ss_pred             EEEEEEEe-cCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee--cCCcceeEEEEEEEEeeCCCc
Q 047051            5 SIVGEYKS-PIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT--EAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         5 ~~~~e~~i-~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~--~g~~~~~~~kErl~~~D~~~~   81 (164)
                      .+..+..+ ++|++.+++++ .|... .++|.+. +..+++++.-+.--.|....+.  -...+-..+--|....++...
T Consensus        48 ~~k~~~~~~~~s~e~~~~~l-~D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~  124 (222)
T cd08871          48 MIKVSAIFPDVPAETLYDVL-HDPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEY  124 (222)
T ss_pred             EEEEEEEeCCCCHHHHHHHH-HChhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEE
Confidence            35556666 79999999997 79874 7899986 5566666542211123233332  111222333333332233222


Q ss_pred             EEEEEEEecccc--cc---ceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHHhh
Q 047051           82 VFRYSIVEGGIL--GF---KVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        82 ~~~Y~i~eg~~~--~~---~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l~~  155 (164)
                      .+...-+.-+..  ..   -...+.+-+.++|.++++|.+.|....++.+.  +|.--+. .+......+++.|.+.+..
T Consensus       125 vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~--IP~~lvN~~~~~~~~~~l~~l~k~~~~  202 (222)
T cd08871         125 IIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS--LPKWVVNKATTKLAPKVMKKLHKAALK  202 (222)
T ss_pred             EEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC--cCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            221111111111  01   12345677888999888999999999998873  3332222 3445566788888877776


Q ss_pred             Cchhh
Q 047051          156 NPQCL  160 (164)
Q Consensus       156 ~~~~~  160 (164)
                      -++-.
T Consensus       203 y~~~~  207 (222)
T cd08871         203 YPEWK  207 (222)
T ss_pred             HHHHH
Confidence            66543

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=92.43  E-value=3.8  Score=31.19  Aligned_cols=147  Identities=14%  Similarity=0.002  Sum_probs=83.0

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecC---CcceeEEEEEEEEe-eCC
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEA---VKEFRYVKDRVEIM-DNE   79 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g---~~~~~~~kErl~~~-D~~   79 (164)
                      ..+..+..++++++++...+..|... .++|.+. +.++++++-...-..+..+....-   ..+-..+--|-... ++.
T Consensus        45 ~~~k~~~~v~~~~~~~~~~~~~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~  122 (206)
T smart00234       45 EASRAVGVVPMVCADLVEELMDDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG  122 (206)
T ss_pred             EEEEEEEEEecChHHHHHHHHhcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence            35677889999999866543478884 8999986 667777763211124444433211   11112222222222 233


Q ss_pred             CcEEEEEEEeccccc-----cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHH
Q 047051           80 NHVFRYSIVEGGILG-----FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFL  153 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~~-----~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l  153 (164)
                      ...+..+-++.+...     .-...+.+-+.++|.+++.|.+.|....++.+.. |.- -+. .+......+++.+.++|
T Consensus       123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i-P~~-lvn~~~~~~~~~~~~~~~~~~  200 (206)
T smart00234      123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL-PHW-LVRSLIKSGLAEFAKTWVATL  200 (206)
T ss_pred             cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc-cce-eehhhhhhhHHHHHHHHHHHH
Confidence            334444323222110     0235677889999998888999999999998742 221 122 24445556666666655


Q ss_pred             h
Q 047051          154 L  154 (164)
Q Consensus       154 ~  154 (164)
                      .
T Consensus       201 ~  201 (206)
T smart00234      201 Q  201 (206)
T ss_pred             H
Confidence            4

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=91.95  E-value=4.7  Score=31.13  Aligned_cols=119  Identities=10%  Similarity=-0.026  Sum_probs=69.0

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee--cCCcceeEEEEEEEEeeCCC--
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT--EAVKEFRYVKDRVEIMDNEN--   80 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~--~g~~~~~~~kErl~~~D~~~--   80 (164)
                      .+..+..+++++++++..+ .|.   -++|.+. +.++++++--+.-=.|-...++  ....+-..+.-|....+.++  
T Consensus        45 ~~K~~~~v~a~~~~v~~~l-~d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~  119 (197)
T cd08869          45 LWRASTEVEAPPEEVLQRI-LRE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA  119 (197)
T ss_pred             EEEEEEEeCCCHHHHHHHH-HHH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence            4678899999999999986 453   3789986 6677877642210011112221  11122233444333333333  


Q ss_pred             cEEEEEEEec--cccc--cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCC
Q 047051           81 HVFRYSIVEG--GILG--FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS  128 (164)
Q Consensus        81 ~~~~Y~i~eg--~~~~--~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~  128 (164)
                      ..+..+=++-  ....  .-...+.+-+.++|.++++|.+.|.+..+|.+..
T Consensus       120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~i  171 (197)
T cd08869         120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRS  171 (197)
T ss_pred             EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCC
Confidence            3333332321  1100  0134566888899998889999999999998733

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=91.50  E-value=5.5  Score=30.99  Aligned_cols=145  Identities=12%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             EEEEEEEe-cCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCccc-EEEEEee-c-CCcceeEEEEEEEEeeCCC
Q 047051            5 SIVGEYKS-PIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGT-IKKFNFT-E-AVKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         5 ~~~~e~~i-~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~-vR~~~~~-~-g~~~~~~~kErl~~~D~~~   80 (164)
                      .+..+..+ ++|++.+.+++ .|... .++|.+. +.++++++.+...++ +-.+.+. + -...-..+--|....|.++
T Consensus        46 ~~k~~~~~~d~s~~~~~~~~-~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~  122 (207)
T cd08911          46 EYKVYGSFDDVTARDFLNVQ-LDLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN  122 (207)
T ss_pred             EEEEEEEEcCCCHHHHHHHH-hCHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence            45565666 99999999997 79984 8999986 667788775322122 1122221 1 0011134555555566665


Q ss_pred             cEE--EEEEEec-c-ccc---cceeEEEEEEEEeeCC---CCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHH
Q 047051           81 HVF--RYSIVEG-G-ILG---FKVNSYVADVTFTSSS---DGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAA  149 (164)
Q Consensus        81 ~~~--~Y~i~eg-~-~~~---~~~~~y~~ti~v~~~~---dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~i  149 (164)
                      ..+  ...-++- . +..   .-+..|.+.+.+.|.+   +++|.+.++.--+|.  ..+|.--+. .+.....++++.|
T Consensus       123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg--G~IP~~lvN~~~~~~~~~~l~~l  200 (207)
T cd08911         123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG--VNIPSYITSWVAMSGMPDFLERL  200 (207)
T ss_pred             CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC--CccCHHHHHHHHHhhccHHHHHH
Confidence            442  1111221 1 100   2467889999999884   457877765554443  344443332 3455666777777


Q ss_pred             HHHHh
Q 047051          150 ERFLL  154 (164)
Q Consensus       150 e~~l~  154 (164)
                      ....+
T Consensus       201 ~~a~~  205 (207)
T cd08911         201 RNAAL  205 (207)
T ss_pred             HHHHh
Confidence            76654

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=88.63  E-value=9.9  Score=29.60  Aligned_cols=141  Identities=13%  Similarity=0.037  Sum_probs=78.2

Q ss_pred             EEEEEEEec-CCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee---cCCcceeEE-EEEEEEeeCC
Q 047051            5 SIVGEYKSP-IAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT---EAVKEFRYV-KDRVEIMDNE   79 (164)
Q Consensus         5 ~~~~e~~i~-apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~---~g~~~~~~~-kErl~~~D~~   79 (164)
                      .+..+..++ ++++.+..++ .|... .++|.+.+.+ +.-.+.++.  .+-.+.+.   +- .+-..+ .-+....|.+
T Consensus        50 ~~k~~~~~~~~s~~~~~~~l-~D~~~-r~~Wd~~~~~-~~~~~~~~~--~i~y~~~k~PwPv-s~RD~V~~r~~~~~~~~  123 (207)
T cd08910          50 EYKVFGVLEDCSPSLLADVY-MDLEY-RKQWDQYVKE-LYEKECDGE--TVIYWEVKYPFPL-SNRDYVYIRQRRDLDVE  123 (207)
T ss_pred             EEEEEEEEcCCCHHHHHHHH-hCHHH-HHHHHHHHHh-heeecCCCC--EEEEEEEEcCCCC-CCceEEEEEEeccccCC
Confidence            466677888 7999999997 79885 7899986443 321122231  12223221   11 111222 1122234544


Q ss_pred             CcEEEE---EEEeccccc-----cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHH
Q 047051           80 NHVFRY---SIVEGGILG-----FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAE  150 (164)
Q Consensus        80 ~~~~~Y---~i~eg~~~~-----~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie  150 (164)
                      +..+..   ..++-+...     .-+..|.+.+.++|.++++|.+.+..-.+|.+  .+|.--+. .+......+++.|.
T Consensus       124 ~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG--~IP~wlvN~~~~~~~~~~l~~l~  201 (207)
T cd08910         124 GRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGG--MIPSWLINWAAKNGVPNFLKDMQ  201 (207)
T ss_pred             CCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCC--cchHHHHHHHHHHhhHHHHHHHH
Confidence            432211   112111110     13678999999999887789988888888765  33332232 34556667777776


Q ss_pred             HHH
Q 047051          151 RFL  153 (164)
Q Consensus       151 ~~l  153 (164)
                      ...
T Consensus       202 ka~  204 (207)
T cd08910         202 KAC  204 (207)
T ss_pred             HHH
Confidence            654

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=88.28  E-value=10  Score=29.26  Aligned_cols=141  Identities=9%  Similarity=-0.047  Sum_probs=78.6

Q ss_pred             EEEEEEEecCCHHHHHHHHhcC--cccccccccCcceeeEEEecCCCCcccEEEEEee--c---C-CcceeEE-EEEEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICD--AHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT--E---A-VKEFRYV-KDRVEI   75 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d--~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~--~---g-~~~~~~~-kErl~~   75 (164)
                      .+..+..++++++++.+.+ .|  ... .++|.+. +.++++++.-+. . .....+.  .   + ..+-..+ .+....
T Consensus        47 ~~k~~~~i~~~~~~v~~~l-~d~~~~~-r~~Wd~~-~~~~~~le~id~-~-~~i~~~~~p~~~~~~vs~RDfV~~~~~~~  121 (206)
T cd08867          47 LYRAEGIVDALPEKVIDVI-IPPCGGL-RLKWDKS-LKHYEVLEKISE-D-LCVGRTITPSAAMGLISPRDFVDLVYVKR  121 (206)
T ss_pred             EEEEEEEEcCCHHHHHHHH-HhcCccc-ccccccc-ccceEEEEEeCC-C-eEEEEEEccccccCccCCcceEEEEEEEE
Confidence            4778889999999999986 57  553 6899976 778888875321 1 2222221  1   1 1111222 121122


Q ss_pred             eeCCCcEEEEEEEeccccccce------eEEEEEEEEeeCC--CCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHH
Q 047051           76 MDNENHVFRYSIVEGGILGFKV------NSYVADVTFTSSS--DGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMV  146 (164)
Q Consensus        76 ~D~~~~~~~Y~i~eg~~~~~~~------~~y~~ti~v~~~~--dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  146 (164)
                      .++....+...-++-+.. .+.      ..+.+-+-+.|..  +++|.+.|.+..++.+..  |.--+ ..+.++....+
T Consensus       122 ~~~~~~~i~~~Sv~hp~~-p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~  198 (206)
T cd08867         122 YEDNQWSSSGKSVDIPER-PPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI--PQSLVESAMPSNLVNFY  198 (206)
T ss_pred             eCCCeEEEEEEeccCCCC-CCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC--cHHHHHhhhhhhHHHHH
Confidence            333333333333322211 122      2333445567654  457999999999998633  33222 24566677777


Q ss_pred             HHHHHHH
Q 047051          147 KAAERFL  153 (164)
Q Consensus       147 k~ie~~l  153 (164)
                      +.+.+++
T Consensus       199 ~~lr~~~  205 (206)
T cd08867         199 TDLVKGV  205 (206)
T ss_pred             HHHHHhc
Confidence            8777765

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=86.18  E-value=16  Score=29.23  Aligned_cols=141  Identities=9%  Similarity=0.039  Sum_probs=78.5

Q ss_pred             EEEEEEEec-CCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEe--e---cCCcceeEE-EEEEEEee
Q 047051            5 SIVGEYKSP-IAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNF--T---EAVKEFRYV-KDRVEIMD   77 (164)
Q Consensus         5 ~~~~e~~i~-apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~--~---~g~~~~~~~-kErl~~~D   77 (164)
                      .+..+..++ ++++.+..+| .|... .++|... +.+.++++-.. .++ +.+..  .   +-+.. ..+ .-++...|
T Consensus        53 ~~Ka~~~v~~vt~~~~~~~l-~D~~~-r~~Wd~~-~~~~~vie~l~-~~~-~I~Y~~~k~PwPvs~R-D~V~~~~~~~~~  126 (235)
T cd08872          53 PLKATHAVKGVTGHEVCHYF-FDPDV-RMDWETT-LENFHVVETLS-QDT-LIFHQTHKRVWPAAQR-DALFVSHIRKIP  126 (235)
T ss_pred             eEEEEEEECCCCHHHHHHHH-hChhh-HHHHHhh-hheeEEEEecC-CCC-EEEEEEccCCCCCCCc-EEEEEEEEEecC
Confidence            467777888 9999999997 79985 7899975 77878776421 111 22222  1   11111 122 22222233


Q ss_pred             CCC--------cEEEEEEEeccccccce-eEEEEE-----------------EEEeeCCCCceeEEEEEEEEEcCCCCCC
Q 047051           78 NEN--------HVFRYSIVEGGILGFKV-NSYVAD-----------------VTFTSSSDGDCFAKLKIEYESLGDSLLS  131 (164)
Q Consensus        78 ~~~--------~~~~Y~i~eg~~~~~~~-~~y~~t-----------------i~v~~~~dg~s~v~w~~~~~~~~~~~~~  131 (164)
                      +..        -.+..++.-....  +- ...++.                 +.++| ++++|.+.+....+|.+..  |
T Consensus       127 d~~~~~~~~~~vii~~Sv~h~~~P--~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~i--P  201 (235)
T cd08872         127 ALEEPNAHDTWIVCNFSVDHDSAP--LNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWA--P  201 (235)
T ss_pred             ccccccCCCeEEEEEecccCccCC--CCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCc--c
Confidence            321        2233333222111  11 122222                 22334 3568999999999888633  2


Q ss_pred             hHHH-HHHHHHHHHHHHHHHHHHhhC
Q 047051          132 EEDV-RNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus       132 ~~~~-~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      .--+ ..+...+.++++.+..|++.+
T Consensus       202 ~wvvn~~~k~~~P~~l~~~~~~~~~~  227 (235)
T cd08872         202 ASVLRAVYKREYPKFLKRFTSYVQEK  227 (235)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHh
Confidence            3223 346668889999999999865

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
1fsk_A	159	Complex Formation Between A Fab Fragment Of A Monoc		8e-26
1fm4_A	159	Crystal Structure Of The Birch Pollen Allergen Bet		1e-25
4a84_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		1e-25
4a80_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		1e-25
1b6f_A	159	Birch Pollen Allergen Bet V 1 Length = 159		2e-25
1llt_A	159	Birch Pollen Allergen Bet V 1 Mutant E45s Length =		4e-25
4a8u_A	159	Crystal Structure Of Native Birch Pollen Allergen B		1e-24
1qmr_A	159	Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E4		4e-24
1e09_A	159	Solution Structure Of The Major Cherry Allergen Pru		6e-22
2lpx_A	170	Solution Structure Of Strawberry Allergen Fra A 1e		4e-21
1h2o_A	159	Solution Structure Of The Major Cherry Allergen Pru		6e-21
2k7h_A	157	Nmr Solution Structure Of Soybean Allergen Gly M 4		1e-19
2qim_A	158	Crystal Structure Of Pathogenesis-Related Protein L		1e-18
3ie5_A	165	Crystal Structure Of Hyp-1 Protein From Hypericum P		1e-17
1xdf_A	157	Crystal Structure Of Pathogenesis-Related Protein L		1e-17
3rws_A	168	Crystal Structure Of Medicago Truncatula Nodulin 13		2e-17
1ifv_A	155	Crystal Structure Of Pathogenesis-Related Protein L		1e-14
3us7_A	156	Crystal Structure Of Phytohormone Binding Protein F		1e-14
2flh_A	155	Crystal Structure Of Cytokinin-Specific Binding Pro		5e-13
2bk0_A	154	Crystal Structure Of The Major Celery Allergen Api		5e-13
1tw0_A	157	Native Crystal Structure Of Spe16 Length = 157		9e-13
1icx_A	155	Crystal Structure Of Pathogenesis-Related Protein L		2e-11
2wql_A	154	Crystal Structure Of The Major Carrot Allergen Dau		1e-09
2vne_A	201	The X-Ray Structure Of Norcoclaurine Synthase From		8e-06

>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal Igg Antibody And The Major Allergen From Birch Pollen Bet V 1 Length = 159

Iteration: 1
 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N  PK  PQ ISS++ +EG+GG GTIKK +F E +  F+Y
Sbjct: 8   ETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGLP-FKY 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG    K+  +Y + GD 
Sbjct: 67  VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E V+  K+   T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154

>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l Length = 159

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   R++KA I D    +PK  PQ ISS++ +EG+GG GTIKK NF E    F+Y
Sbjct: 8   EATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFP-FKY 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG C  K+  +Y + G+ 
Sbjct: 67  VKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E V+  K+   T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154

>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A F30v Mutant In Complex With Deoxycholate Length = 159

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N +PK  PQ ISS++ +EG+GG GTIKK +F E    F+Y
Sbjct: 8   ETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG    K+  +Y + GD 
Sbjct: 67  VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E V+  K+   T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154

>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans) Length = 159

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N  PK  PQ ISS++ +EG+GG GTIKK +F E    F+Y
Sbjct: 8   ETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG    K+  +Y + GD 
Sbjct: 67  VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E V+  K+   T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154

>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1 Length = 159

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N  PK  PQ ISS++ +EG+GG GTIKK +F E    F+Y
Sbjct: 8   ETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG    K+  +Y + GD 
Sbjct: 67  VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E V+  K+   T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKELGETLLRAVESYLLAH 154

>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s Length = 159

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N  PK  PQ ISS++ + G+GG GTIKK +F E +  F+Y
Sbjct: 8   ETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPEGLP-FKY 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG    K+  +Y + GD 
Sbjct: 67  VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E V+  K+   T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154

>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1 Isoform J Length = 159

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N  PK  PQ ISS++ +EG+GG GTIKK +F E    F+Y
Sbjct: 8   EATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ +G    K+  +Y + GD 
Sbjct: 67  VKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E ++  K+   T+++A E +LLA+
Sbjct: 127 EVKAEQIKASKEMGETLLRAVESYLLAH 154

>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s, P108g Length = 159

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D     P+  PQ ISS++ + G+GG GTIKK +F E +  F+Y
Sbjct: 8   ETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPEGLP-FKY 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG    K+  +Y + GD 
Sbjct: 67  VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
            +  E V+  K+   T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154

>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Length = 159

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E+ S I   RL+KA + DA N +PK  PQ I   ++LEGDGG GTIKK  F E   ++ Y
Sbjct: 8   EFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEG-SQYGY 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VK +++ +D EN+ + Y+++EG  LG  +     +    +S  G    K    Y + G+ 
Sbjct: 67  VKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNV 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQC 159
            + EE V+  K+    + K  E +L  +P  
Sbjct: 127 EIKEEHVKAGKEKASNLFKLIETYLKGHPDA 157

>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e Length = 170

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 1/149 (0%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E+ S I   +L+KA + DA N +PK  PQ +   ++LEGDGG GTIKK  F E    + Y
Sbjct: 9   EFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFGEG-SHYGY 67
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VK ++  +D  NH + YS++EG  L   +     +    S+  G    K   +Y + GD 
Sbjct: 68  VKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSKYHTKGDV 127
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANP 157
            + EE V+  K+    + K  E +L  +P
Sbjct: 128 EIKEEHVKAGKEKAAHLFKLIEGYLKDHP 156

>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Mutant E45w Length = 159

Iteration: 1
 Score = 96.7 bits (239), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 1/151 (0%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E+ S I   RL+KA + DA N +PK  PQ I   ++L GDGG GTIKK  F E   ++ Y
Sbjct: 8   EFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGEG-SQYGY 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VK +++ +D EN+ + Y+++EG  LG  +     +    +S  G    K    Y + G+ 
Sbjct: 67  VKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNV 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQC 159
            + EE V+  K+    + K  E +L  +P  
Sbjct: 127 EIKEEHVKAGKEKASNLFKLIETYLKGHPDA 157

>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4 Length = 157

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  SP+A   L+KAL+ DA N +PKAL     S++ +EG+GG GTIKK  F E   E ++
Sbjct: 8   EINSPVAPATLYKALVTDADNVIPKAL-DSFKSVENVEGNGGPGTIKKITFLED-GETKF 65
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           V  ++E +D  N  + YS+V G  L         D    +  +G    KL ++YE+ GD+
Sbjct: 66  VLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKYETKGDA 125
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
             ++++++  K     + KA E +LLA+P 
Sbjct: 126 EPNQDELKTGKAKADALFKAIEAYLLAHPD 155

>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2b From Yellow Lupine In Complex With Cytokinin Length = 158

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           EY S IA  +L+KAL+ DA   +PKA+ + I S++++EG+GG GTIKK  F E   E +Y
Sbjct: 9   EYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFIEG-GESKY 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           V  ++E +D  N  + YSIV G  L   +     +      ++G    K+ I+ E+ GD+
Sbjct: 67  VLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDA 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANP 157
             +EE+ +  K       KA E +L A+P
Sbjct: 127 QPNEEEGKAAKARGDAFFKAIESYLSAHP 155

>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum Perforatum (St John's Wort) Involved In Hypericin Biosynthesis Length = 165

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT 60
           M   +IV E +SPIA  RL+KAL+ + H  + KA P V  S +++EGDGGVGT+ K  F 
Sbjct: 7   MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 61  EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKI 120
           +      Y+  + + +D  N   +Y++ EG +L   +   V +V   +   G    K+ +
Sbjct: 67  DG-HPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGGGSK-GKITV 124
Query: 121 EYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC 161
            Y       ++EE+V+  ++      K  E +L ANP+   
Sbjct: 125 TYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVFA 165

>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2a From Yellow Lupine Length = 157

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S IA  RL+KAL+ DA   +PKA+ + I SI+ +EG+GG GTIKK    E   E +Y
Sbjct: 8   ESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIEG-GETKY 65
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           V  ++E +D  N  + YSIV G  L   +     +      ++G    K+ I+ E+ GD+
Sbjct: 66  VLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDA 125
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
             +EE+ +  K       KA E +L A+P+
Sbjct: 126 QPNEEEGKAAKARGDAFFKAIENYLSAHPE 155

>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr10.1b From Yellow Lupine Length = 155

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E+ S +A  +L+KAL  D+ + +PK + Q I S++++EG+GG GT+KK   +       Y
Sbjct: 8   EHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASHG-GHTSY 65
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           V  +++ +D  +  + YSIV G  L   +     +    S  DG    K+K+++ + GD 
Sbjct: 66  VLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKFHTKGD- 124
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
           +LS+      K     + KA E ++LANP 
Sbjct: 125 VLSDAVREEAKARGTGLFKAVEGYVLANPN 154

>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From Medicago Truncatula In Complex With Gibberellic Acid (Ga3) Length = 156

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 14  IAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRV 73
           + +E LW A   D    +PK LP ++  + ++EGDGGVGT   FNF   +    Y ++ +
Sbjct: 13  VGLEALWAAQSKDITLVVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPGIAPVNYQREVI 72
Query: 74  EIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEE 133
              D  +H     +VEGG L   ++ Y     F++ S+      +KI Y+   +S L EE
Sbjct: 73  TEYDELSHTIGLQVVEGGYLNQGLSYYKTTFQFSAISENKTLVNVKISYDH--ESELIEE 130
Query: 134 DVRNIK--QGILTMVKAAERFLL 154
            V+  K  +  L  +   E+FLL
Sbjct: 131 KVKPTKTSESTLFYLGQLEKFLL 153

>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein From Mung Bean In Complex With Cytokinin Length = 155

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 14  IAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRV 73
           + +E LW  L  D    +PK LP ++  + L+EGDGGVGTI  FNF   V    Y ++ +
Sbjct: 13  VRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSP-SYQREEI 71
Query: 74  EIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEE 133
              D  +H     ++EGG L   ++ Y      +   +      +KI Y+   D    EE
Sbjct: 72  TEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSD---IEE 128
Query: 134 DVRNIK--QGILTMVKAAERFL 153
            V   K  Q  L  ++  ER+L
Sbjct: 129 KVTPTKTSQSTLMYLRRLERYL 150

>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1 Length = 154

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S ++ E++++  + D    +PKA P    S+++ +GDGG GT+K     +       
Sbjct: 9   ELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPDG-GPITT 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           +  R++ ++ E   F YS+++G IL   + S    V    ++DG    K    + + GD+
Sbjct: 67  MTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDA 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
           ++ EE+++   +    + KA E +L+AN
Sbjct: 127 VVPEENIKYANEQNTALFKALEAYLIAN 154

>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16 Length = 157

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 6/151 (3%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S +A  +L+KAL  D+     K +   I SI+L+EG+GGVGTIKK    E  K   +
Sbjct: 8   ETSSSVAPAKLYKALTKDSDTIAQK-IDGPIQSIELVEGNGGVGTIKKITANEGDKT-SF 65
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           V  +V+ +D  N  + YSIV G  L   +     +    + S G   +K+ +++ + GD+
Sbjct: 66  VLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDA 125
Query: 129 LLSEEDVRN--IKQGILTMVKAAERFLLANP 157
            LS+  VR+  + +G     KA E ++LANP
Sbjct: 126 PLSDA-VRDDALAKG-AGFFKAIEGYVLANP 154

>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr10.1a From Yellow Lupine Length = 155

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S +A  +L+KAL  D+   +PK + + I S++++EG+GG GTIKK           +
Sbjct: 8   EQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHD-GHTSF 65
Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           V  +++ +D  N  + YSI+ G  L   +     +       DG    K+ +++ + GD 
Sbjct: 66  VLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGD- 124
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANP 157
           +LSE      K   L + KA E ++LA+P
Sbjct: 125 VLSETVRDQAKFKGLGLFKAIEGYVLAHP 153

>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1 Length = 154

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S ++ E+++  ++ D    +PKA      S+++ +GDGG GT++     E       
Sbjct: 9   EITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLPEG-SPITT 66
Query: 69  VKDRVEIMDNENHVFRYSIVEGGIL-GFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGD 127
           +  R + ++ E   +  ++++G IL GF + S    +    ++DG    K    + + GD
Sbjct: 67  MTVRTDAVNKEALSYDSTVIDGDILLGF-IESIETHMVVVPTADGGSITKTTAIFHTKGD 125
Query: 128 SLLSEEDVRNIKQGILTMVKAAERFLLAN 156
           +++ EE+++        + KA E +L+AN
Sbjct: 126 AVVPEENIKFADAQNTALFKAIEAYLIAN 154

>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From Thalictrum Flavum Length = 201

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 31  MPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90
           +P  LP     ++++ GDGGVGTI    F        Y K++  ++DNE+ + +   +EG
Sbjct: 57  LPDLLPGAFEKLEII-GDGGVGTILDXTFVPGEFPHEY-KEKFILVDNEHRLKKVQXIEG 114
Query: 91  GILGFKVNSYVADVTFTSSSDGDCFAKLKIEYE 123
           G L   V  Y   +    +    C  K   EY 
Sbjct: 115 GYLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYH 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	3e-49
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	1e-48
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	4e-48
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	4e-48
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	9e-48
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	1e-47
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	3e-47
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	5e-45
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	1e-43
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	8e-43
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	1e-35
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	4e-16
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	2e-14
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	1e-08
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	2e-08
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	2e-08
1vjh_A	122	BET V I allergen family; structural genomics, cent	3e-08
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	2e-07
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	2e-04

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score =  155 bits (392), Expect = 3e-49
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   RL+KA I D  N  PK  PQ ISS++ +EG+GG GTIKK +F E    F+Y
Sbjct: 8   EATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 66

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ +G    K+  +Y + GD 
Sbjct: 67  VKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDH 126

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
            +  E ++  K+   T+++A E +LLA+  
Sbjct: 127 EVKAEQIKASKEMGETLLRAVESYLLAHSD 156

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score =  153 bits (388), Expect = 1e-48
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT 60
           M   +IV E +SPIA  RL+KAL+ + H  + KA P V  S +++EGDGGVGT+ K  F 
Sbjct: 7   MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66

Query: 61  EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKI 120
           +      Y+  + + +D  N   +Y++ EG +L   +   V +V    +  G    K+ +
Sbjct: 67  DGHP-LTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLE-AVGGGSKGKITV 124

Query: 121 EYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
            Y       ++EE+V+  ++      K  E +L ANP+
Sbjct: 125 TYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPE 162

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score =  152 bits (385), Expect = 4e-48
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 2/156 (1%)

Query: 2   VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTE 61
           ++     + +  + +E LW  L  D    +PK LP ++  + L+EGDGGVGTI  FNF  
Sbjct: 1   MVKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLP 60

Query: 62  AVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIE 121
            V    Y ++ +   D  +H     ++EGG L   ++ Y      +   +      +KI 
Sbjct: 61  EVS-PSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKIS 119

Query: 122 YESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANP 157
           Y+   D            Q  L  ++  ER+L    
Sbjct: 120 YDHDSDIEEKVTPT-KTSQSTLMYLRRLERYLSNGS 154

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score =  152 bits (385), Expect = 4e-48
 Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 1/155 (0%)

Query: 4   GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAV 63
            +   E+ S I   RL+KA + DA N +PK  PQ I   ++LEGDGG GTIKK  F E  
Sbjct: 3   FTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGS 62

Query: 64  KEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYE 123
           + + YVK +++ +D EN+ + Y+++EG  LG  +     +    +S  G    K    Y 
Sbjct: 63  Q-YGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYH 121

Query: 124 SLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
           + G+  + EE V+  K+    + K  E +L  +P 
Sbjct: 122 TKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPD 156

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score =  151 bits (382), Expect = 9e-48
 Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT 60
           M + +   EY S IA  +L+KAL+ DA   +PKA  + I S++++EG+GG GTIKK  F 
Sbjct: 1   MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKA-VETIQSVEIVEGNGGPGTIKKLTFI 59

Query: 61  EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKI 120
           E  +  +YV  ++E +D  N  + YSIV G  L   +     +      ++G    K+ I
Sbjct: 60  EGGE-SKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTI 118

Query: 121 EYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANP 157
           + E+ GD+  +EE+ +  K       KA E +L A+P
Sbjct: 119 KIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHP 155

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score =  151 bits (382), Expect = 1e-47
 Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 2/150 (1%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S +A  +L+KAL  D+     K +   I SI+L+EG+GGVGTIKK    E  K   +
Sbjct: 8   ETSSSVAPAKLYKALTKDSDTIAQK-IDGPIQSIELVEGNGGVGTIKKITANEGDK-TSF 65

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           V  +V+ +D  N  + YSIV G  L   +     +    + S G   +K+ +++ + GD+
Sbjct: 66  VLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDA 125

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
            LS+    +         KA E ++LANP 
Sbjct: 126 PLSDAVRDDALAKGAGFFKAIEGYVLANPA 155

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score =  142 bits (358), Expect = 1e-43
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 6/159 (3%)

Query: 1   MVLGSIVGEYKSPIAVERLWKALIC-DAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNF 59
            V   I  E +   + + +W           +P  LP     +++  GDGGVGTI    F
Sbjct: 26  TVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEI-IGDGGVGTILDMTF 84

Query: 60  TEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLK 119
                     K++  ++DNE+ + +  ++EGG L   V  Y+  +    +    C  K  
Sbjct: 85  VPGEF-PHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSS 143

Query: 120 IEYESLGDSLLSEEDVRNIKQGILT-MVKAAERFLLANP 157
            EY    + +   E +  I  G L  M  A  + +L + 
Sbjct: 144 TEYHVKPEFVKIVEPL--ITTGPLAAMADAISKLVLEHK 180

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score =  138 bits (349), Expect = 8e-43
 Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S +A  +L+KAL  D+   +PK +   I S++++EG+GG GTIKK           +
Sbjct: 8   EQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIHD-GHTSF 65

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           V  +++ +D  N  + YSI+ G  L   +     +       DG    K+ +++ + GD 
Sbjct: 66  VLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV 125

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANP 157
            LSE      K   L + KA E ++LA+P
Sbjct: 126 -LSETVRDQAKFKGLGLFKAIEGYVLAHP 153

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score =  120 bits (302), Expect = 1e-35
 Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 4   GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGG-VGTIKKFNFTEA 62
           G +  + +   + ++         H+   KA P  I   DL EGD G VG+I  +N+   
Sbjct: 17  GKLETDVEIKASADKFHHMFAGKPHHV-SKASPGNIQGCDLHEGDWGTVGSIVFWNYVHD 75

Query: 63  VKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGD-CFAKLKIE 121
            +  +  K+R+E ++ + ++  + ++EG ++  +  S++  +  T    G        +E
Sbjct: 76  GE-AKVAKERIEAVEPDKNLITFRVIEGDLMK-EYKSFLLTIQVTPKPGGPGSIVHWHLE 133

Query: 122 YESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN 156
           YE + + +   E    + Q  + + K  +  LLA 
Sbjct: 134 YEKISEEVAHPE---TLLQFCVEVSKEIDEHLLAE 165

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score = 70.9 bits (173), Expect = 4e-16
 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 13/160 (8%)

Query: 5   SIVGEYKSPIAVERLWKALICDAHNF-MPKALPQVISSIDLLEGDGGVGTIKKFNFTEAV 63
            I     +P     +W  +      F  P+     +    L+ GDG VG++++      +
Sbjct: 38  LITQRIHAP--ASVVWPLI----RRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGL 91

Query: 64  KEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYE 123
                  +R+E +D+++ V  + +V G        S  +   F +   G  +  +   Y 
Sbjct: 92  -PASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYT 150

Query: 124 SLGDSLLSEEDVRN-----IKQGILTMVKAAERFLLANPQ 158
                  +EED +      +K  +  +  AA    + + +
Sbjct: 151 VDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHDDE 190

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 15/144 (10%)

Query: 15  AVERLWKALICDAHNFM-PKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRV 73
            +  +W  +      F  P+     IS   +      VG++++ +    +       + +
Sbjct: 38  PLHLVWSIV----RRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGL-PATKSTEVL 92

Query: 74  EIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIE-YESLGDSLLSE 132
           EI+D+  H+    IV G     ++ +Y + ++  S +       L IE +        ++
Sbjct: 93  EILDDNEHILGIRIVGG---DHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTK 149

Query: 133 EDVRN-----IKQGILTMVKAAER 151
           E+        I+  + ++    ER
Sbjct: 150 EETCFFVEALIQCNLNSLADVTER 173

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 6   IVGEYKSPIAVERLWKALICDAHNF-MPKALPQVISSIDLLEGDGG-VGTIKKFNFTEAV 63
           +     +P   E +W  +      F  P+     I S ++ E     VG  +  N    +
Sbjct: 58  LAQRIHAP--PETVWSVV----RRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGL 111

Query: 64  KEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIE 121
                 ++R++++D++  V  +SI  G        S      F    + +    + +E
Sbjct: 112 -PANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLE 168

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 6   IVGEYKSPIAVERLWKALICDAHNF-MPKALPQVISSIDLLEG-DGGVGTIKKFNFTEAV 63
                 +P   E +W  +      F  P+     I S  + +  +  VG  +       +
Sbjct: 54  HAQRIHAP--PELVWSIV----RRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGL 107

Query: 64  KEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEY 122
                  +R++I+D+E  V  +SI+ G     ++ +Y +  T       +    + +E 
Sbjct: 108 -PANTSTERLDILDDERRVTGFSIIGGEH---RLTNYKSVTTVHRFEKENRIWTVVLES 162

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122

 Score = 48.8 bits (116), Expect = 3e-08
 Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 70  KDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGD-CFAKLKIEYESLGDS 128
           K  +E +D         +    I  +   +    +  T    GD         +E +   
Sbjct: 37  KTEIEAVDLVKKTMTIQMSGSEIQKY-FKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKD 95

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
           +       +I    +   K  +  +L   +
Sbjct: 96  IDDPH---SIIDESVKYFKKLDEAILNFKE 122

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Length = 205

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 26/155 (16%), Positives = 62/155 (40%), Gaps = 20/155 (12%)

Query: 5   SIVGEYKSPIAVERLWKALICDAHNF--MPKALPQVISSIDLLEGDGGVGTIKKFNFTEA 62
           ++V   K+P  +  +W  +      F    K  P V      + GD  +G++++ N    
Sbjct: 55  ALVKHIKAP--LHLVWSLV----RRFDQPQKYKPFVSRCT--VIGDPEIGSLREVNVKSG 106

Query: 63  VKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIE- 121
           +       +R+E++D+E H+    I+ G     ++ +Y + +T            + IE 
Sbjct: 107 LPA-TTSTERLELLDDEEHILGIKIIGGDH---RLKNYSSILTVHPEIIEGRAGTMVIES 162

Query: 122 YESLGDSLLSEEDVRN-----IKQGILTMVKAAER 151
           +        ++++        I+  + ++   +ER
Sbjct: 163 FVVDVPQGNTKDETCYFVEALIRCNLKSLADVSER 197

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Length = 160

 Score = 47.0 bits (111), Expect = 2e-07
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 23/149 (15%)

Query: 16  VERLWKALICDAHNFM-PKALPQVISSIDLLEGDGG--VGTIKKFNFTEAVKEFRYVKDR 72
           VER+W  +     NF      P +I S   + G GG  VG  +  N            D 
Sbjct: 14  VERVWSRI----RNFHDFSWAPSLIKSCKKVGGGGGYSVGARRLLNGE--------FLDT 61

Query: 73  VEIMDNENHVFRYSIVEG--GILGFKVNSYVADVTFTSSSDGD-CFAKLKIEYESLGDSL 129
           +           YS+ EG   +   ++ +YV ++     +  D  F +    +ES     
Sbjct: 62  LIAYSEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWES----- 116

Query: 130 LSEEDVRNIKQGILTMVKAAERFLLANPQ 158
            S E V  +     +++        +  +
Sbjct: 117 ASTEAVEYMNTVYRSLLADLAAEFTSESR 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 64/203 (31%)

Query: 2   VLGSIVGEYKSPI--------AVERLWKALICDAHNFMP-------------KALPQVIS 40
           ++  I  E + P           +RL+     D   F               +AL ++  
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYN----DNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 41  SIDL-LEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF----RYSIVEGGILGF 95
           + ++ ++G  G G  K +   +    ++ V+ +      +  +F    +       +L  
Sbjct: 150 AKNVLIDGVLGSG--KTWVALDVCLSYK-VQCK-----MDFKIFWLNLKNCNSPETVLEM 201

Query: 96  KVN-SYVADVTFTSSSDGDCFAKLKIE-----------YESLGDSLLSEEDVRNIKQGIL 143
                Y  D  +TS SD     KL+I             +   + LL   +V+N K    
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK---- 257

Query: 144 TMVKAAERFLLANPQC---LCTR 163
               A   F   N  C   L TR
Sbjct: 258 -AWNA---F---NLSCKILLTTR 273

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 3klx_A Length = 189

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 32  PKALPQVISSIDLLEGDGG-----VGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYS 86
           P      I S  +     G     VGTI++ +    +       + +E++D E  +  + 
Sbjct: 55  PNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPA-STSVEILEVLDEEKRILSFR 113

Query: 87  IVEGGILGFKVNSYVADVTFTSSSDGD 113
           ++ G     ++N+Y +  +       +
Sbjct: 114 VLGG---EHRLNNYRSVTSVNEFVVLE 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	100.0
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	100.0
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	100.0
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	100.0
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	100.0
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	100.0
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	100.0
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	100.0
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	100.0
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	100.0
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	100.0
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	100.0
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.97
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.97
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.97
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.96
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.96
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.96
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	99.96
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.96
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	99.95
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	99.94
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.93
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.75
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.74
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.71
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.68
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.64
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.49
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.48
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.48
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.38
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	99.31
2il5_A	171	Hypothetical protein; structural genomics, APC2365	99.1
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	99.09
2leq_A	146	Uncharacterized protein; start domains, structural	99.07
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	99.05
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	99.03
2lcg_A	142	Uncharacterized protein; start domain, structural	98.98
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.9
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.88
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.87
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.83
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.82
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.82
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.8
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.8
3put_A	166	Hypothetical conserved protein; structural genomic	98.79
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.77
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.75
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.74
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.74
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.73
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.71
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.65
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	98.61
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.53
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	98.52
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	98.46
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.44
3qsz_A	189	STAR-related lipid transfer protein; structural ge	98.41
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	98.36
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	98.23
2luz_A	192	CALU16; structural genomics, northeast structural	98.2
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.05
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	97.98
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	97.82
2lio_A	136	Uncharacterized protein; structural genomics, nort	97.72
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	97.49
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	96.63
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	95.99
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	95.63
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	95.6
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	94.33
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	92.48
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	91.05

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=100.00  E-value=1.5e-48  Score=295.53  Aligned_cols=159  Identities=31%  Similarity=0.552  Sum_probs=150.2

Q ss_pred             CccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCC
Q 047051            1 MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~   80 (164)
                      |++++++.|+++++||++||+++++||++++|+|+|++|++|+++||+|++||||.|+|.+| ++..++||||+.+|+++
T Consensus         7 Mg~~~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g-~~~~~~kErl~~iD~~~   85 (165)
T 3ie5_A            7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDG-HPLTYMLHKFDEIDAAN   85 (165)
T ss_dssp             CSCEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTT-SSCCEEEEEEEEEEGGG
T ss_pred             eeeEEEEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCCCCCCeEEEEEecCC-CCCceEEEEEEEEchhc
Confidence            99999999999999999999996589998779999999999999999999999999999988 66789999999999999


Q ss_pred             cEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhh
Q 047051           81 HVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCL  160 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~  160 (164)
                      |+++|+++||+++..+|++|+++++|+ .++|+|+++|+++|++.++..++|+.++..++.+.+|+|+||+||++|||+|
T Consensus        86 ~~~~Y~iieG~~l~~~~~~y~~~i~v~-~~~ggs~vkwt~~y~~~~~~~~~~e~~k~~~~~~~~~~K~ie~yllanp~~~  164 (165)
T 3ie5_A           86 FYCKYTLFEGDVLRDNIEKVVYEVKLE-AVGGGSKGKITVTYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVF  164 (165)
T ss_dssp             TEEEEEEEEEGGGTTTEEEEEEEEEEE-EETTEEEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred             CEEEEEEecCCCCccceEEEEEEEEEE-eCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence            999999999998756799999999999 5677999999999999999999999888888999999999999999999999


Q ss_pred             h
Q 047051          161 C  161 (164)
Q Consensus       161 ~  161 (164)
                      |
T Consensus       165 ~  165 (165)
T 3ie5_A          165 A  165 (165)
T ss_dssp             C
T ss_pred             C
Confidence            7

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=100.00  E-value=4.5e-48  Score=291.39  Aligned_cols=159  Identities=35%  Similarity=0.591  Sum_probs=149.3

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            2 VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ++.+++.|+++++||++||+++++||++++|+|+|++|++|+++||+|++|+||.|+|.+| ++.+.+||||+.+|+++|
T Consensus         1 ~~~~~~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g-~~~~~~kErl~~iD~~~~   79 (159)
T 4a8u_A            1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEG-FPFKYVKDRVDEVDHTNF   79 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTT-SSCSEEEEEEEEEETTTT
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCCCceEEEEEEecC-CCccEEEEEEEEEccccC
Confidence            5789999999999999999996589999889999999999999999999999999999988 667899999999999999


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhhh
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC  161 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~~  161 (164)
                      +++|+++||+.+..+|++|+++++|.|.++|+|+++|+++|++.++..++|+.++..++.+.+|+|+||+||++|||+||
T Consensus        80 ~~~y~iiegd~l~~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~k~~~~~~~~~~k~ie~yll~np~~~~  159 (159)
T 4a8u_A           80 KYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAYN  159 (159)
T ss_dssp             EEEEEEEEETTCBTTEEEEEEEEEEEECTTSCEEEEEEEEEEESSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred             EEEEEEeeCCCCccceEEEEEEEEEEECCCCceEEEEEEEEEECCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhChhhhC
Confidence            99999999998766799999999999998889999999999999999889988887889999999999999999999997

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=100.00  E-value=7.7e-46  Score=277.88  Aligned_cols=154  Identities=23%  Similarity=0.430  Sum_probs=144.9

Q ss_pred             CccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCC
Q 047051            1 MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~   80 (164)
                      |++++++.|+++++||+|+|++++.|+++++|+|+|++++++++ +|||++|+||.|+|..| ++..+++|||+.+|+++
T Consensus         1 mgv~~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~v-eGdg~~Gsir~~t~~~g-~~~~~~kErle~iD~~~   78 (154)
T 2wql_A            1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLPEG-SPITTMTVRTDAVNKEA   78 (154)
T ss_dssp             --CCEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEE-ESSSSTTCEEEEECCTT-CSCCEEEEEEEEEETTT
T ss_pred             CCCeEEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEEE-ECCCCCCeEEEEEEcCC-CCceEEEEEEEEEehhh
Confidence            99999999999999999999987789999899999999999995 89999999999999988 66789999999999999


Q ss_pred             cEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC
Q 047051           81 HVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      |+++|+++||+.+..+|++|+.+++|+|.++|+|+++|+++|++.++..++|+.++...+.+.++||++|+||+||
T Consensus        79 ~~~~y~iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t~~Y~~~~~~~~~ee~~~~~~~~~~~~~KaiEayLlan  154 (154)
T 2wql_A           79 LSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN  154 (154)
T ss_dssp             TEEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEEEeccccccceEEEEEEEEEeeCCCCcEEEEEEEEEEECCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            9999999999988789999999999999999999999999999999999999988877888999999999999997

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=100.00  E-value=2.6e-45  Score=275.93  Aligned_cols=158  Identities=33%  Similarity=0.565  Sum_probs=148.8

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhc-CcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCC
Q 047051            2 VLGSIVGEYKSPIAVERLWKALIC-DAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~-d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~   80 (164)
                      ++++++.+++|++||++||+++ + ||++++|+|+|++|++|++++|+|++||||.|+|.+| .+..+++|||+.+|+++
T Consensus         1 ~~~~~~~e~~i~ap~~~vw~~~-~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~G-~~~~~~kErl~~~D~~~   78 (159)
T 1e09_A            1 GVFTYESEFTSEIPPPRLFKAF-VLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEG-SQYGYVKHKIDSIDKEN   78 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHH-TTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCS-SSCEEEEEEEEEEETTT
T ss_pred             CcEEEEEEEEecCCHHHHHHHH-hcCccccchhhChhhccEEEEEeCCCCCceEEEEEecCC-CCceEEEEEEEEEcCCC
Confidence            5789999999999999999997 6 9998789999999999999999999999999999977 56678999999999999


Q ss_pred             cEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhh
Q 047051           81 HVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCL  160 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~  160 (164)
                      |+++|+++||+++..+|++|+++++|.|.++|+|+++|+++|++.++..++|+.++.+++.+.+|+|+||+||++|||+|
T Consensus        79 ~~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~~~~~  158 (159)
T 1e09_A           79 YSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY  158 (159)
T ss_dssp             TEEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred             CEEEEEEEecccCcccceEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChhhc
Confidence            99999999999876689999999999999888899999999999999999998888888999999999999999999999


Q ss_pred             h
Q 047051          161 C  161 (164)
Q Consensus       161 ~  161 (164)
                      |
T Consensus       159 ~  159 (159)
T 1e09_A          159 N  159 (159)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=100.00  E-value=1e-44  Score=272.40  Aligned_cols=157  Identities=35%  Similarity=0.532  Sum_probs=146.6

Q ss_pred             CccEEEEEEEEecCCHHHHHHHHhc-CcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCC
Q 047051            1 MVLGSIVGEYKSPIAVERLWKALIC-DAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~~~-d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~   79 (164)
                      |++++++.++++++||++||+++ + ||++++|+|+ +.|++|++++|+|++||||.|+|.+| ++..+++|||+.+|++
T Consensus         1 M~~~~~~~e~~i~a~a~kvw~~~-~~d~~~~~pk~~-~~i~s~~i~eGdgg~Gsir~~~~~~g-~~~~~~kErl~~~D~~   77 (158)
T 2qim_A            1 MGVFTFQDEYTSTIAPAKLYKAL-VTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFIEG-GESKYVLHKIEAIDEA   77 (158)
T ss_dssp             -CEEEEEEEEEESSCHHHHHHHH-TTTHHHHHHHHC-TTEEEEEEEESSSSTTCEEEEEEEET-TEEEEEEEEEEEEEGG
T ss_pred             CCCEEEEEEEEecCCHHHHHHHH-hcCccchhhhHH-hhCcEEEEEecCCCCCeEEEEEEcCC-CcceeEEEEEEEEecC
Confidence            99999999999999999999997 7 9998789999 57999999999999999999999987 6667899999999999


Q ss_pred             CcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 047051           80 NHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQC  159 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~  159 (164)
                      +|+++|+++||+.+...|++|.++++|.|.++|+|+++|+++|++.++..++|+.++...+.+.+|+|+||+||++||| 
T Consensus        78 ~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~-  156 (158)
T 2qim_A           78 NLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD-  156 (158)
T ss_dssp             GTEEEEEEEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSS-
T ss_pred             CCEEEEEEEeccCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcC-
Confidence            9999999999998744699999999999998888999999999999999999988888889999999999999999999 


Q ss_pred             hh
Q 047051          160 LC  161 (164)
Q Consensus       160 ~~  161 (164)
                      ||
T Consensus       157 ~~  158 (158)
T 2qim_A          157 YN  158 (158)
T ss_dssp             CC
T ss_pred             cC
Confidence            87

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=100.00  E-value=9.3e-44  Score=267.02  Aligned_cols=156  Identities=31%  Similarity=0.428  Sum_probs=146.1

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhc-CcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCC
Q 047051            2 VLGSIVGEYKSPIAVERLWKALIC-DAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~-d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~   80 (164)
                      ++++++.+++|++||++||+++ + ||++++|+|+ +.|++|+++||+|++||||.|+|.+| .+..+++|||+.+|+++
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~-~~d~~~~~pk~~-~~i~s~~i~eG~g~~Gsir~~~~~~G-~~~~~~kErl~~~D~~~   77 (157)
T 1tw0_A            1 GVFVFRDETSSSVAPAKLYKAL-TKDSDTIAQKID-GPIQSIELVEGNGGVGTIKKITANEG-DKTSFVLQKVDAIDEAN   77 (157)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHH-HHTGGGGGGGSC-SSEEEEEEEESSSSTTCEEEEEEEET-TEEEEEEEEEEEEETTT
T ss_pred             CcEEEEEEEEecCCHHHHHHHH-hcCcchhhhhHH-hhccEEEEEeCCCCCCeEEEEEeeCC-CccceEEEEEEEEeccC
Confidence            5789999999999999999997 6 9998889999 57999999999999999999999987 66678999999999999


Q ss_pred             cEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhh
Q 047051           81 HVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCL  160 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~  160 (164)
                      |+++|+++||+.+...|++|+++++|.|.++|+|+++|+++|++.++..++|+.++.+.+.+.+|+|+||+||++|||+|
T Consensus        78 ~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~~~  157 (157)
T 1tw0_A           78 LGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY  157 (157)
T ss_dssp             TEEEEEEEECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             CEEEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence            99999999999874469999999999999887899999999999999999998888888999999999999999999998

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=100.00  E-value=2e-43  Score=264.86  Aligned_cols=152  Identities=28%  Similarity=0.510  Sum_probs=131.2

Q ss_pred             CccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCC
Q 047051            1 MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~   80 (164)
                      |+ ++++.++++++||++||++|++||++++|+|+|+++++|+++||||++||||.|+|.+|.++ ..+||||+.+|+++
T Consensus         1 M~-~~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~g~~~-~~~kErl~~iD~~~   78 (155)
T 2flh_A            1 MV-KEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSP-SYQREEITEFDESS   78 (155)
T ss_dssp             CC-EEEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEECTTSSS-CEEEEEEEEEETTT
T ss_pred             CC-cEEEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCCCCCCeEEEEEeeCCCCC-cEEEEEEEEEeCCC
Confidence            89 99999999999999999995589998669999999999999999999999999999976334 78999999999999


Q ss_pred             cEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHH--HHHHHHHHHHHHHHhhCc
Q 047051           81 HVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIK--QGILTMVKAAERFLLANP  157 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~k~ie~~l~~~~  157 (164)
                      |+++|+++||+++..++++|+++++|.|.++|+|+++|+++|++.++..+++..   ..  +.+.+|+|+||+||+++|
T Consensus        79 ~~~~y~iieg~~l~~~~~~~~~~i~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~---~~~~~~~~~~~k~ie~yll~~~  154 (155)
T 2flh_A           79 HEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTP---TKTSQSTLMYLRRLERYLSNGS  154 (155)
T ss_dssp             TEEEEEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEEC-------CCH---HHHHHHHHHHHHHHHHHHC---
T ss_pred             CEEEEEEEeccccccCceEEEEEEEEEECCCCCEEEEEEEEEEECCCCccChhH---hhhHHHHHHHHHHHHHHHhhCC
Confidence            999999999998767899999999999998889999999999999877664433   35  889999999999999987

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=100.00  E-value=1.2e-42  Score=260.33  Aligned_cols=154  Identities=29%  Similarity=0.479  Sum_probs=143.0

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhc-CcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCC
Q 047051            2 VLGSIVGEYKSPIAVERLWKALIC-DAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~-d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~   80 (164)
                      ++++++.++++++||++||+++ + ||++++|+|+ +.|++|+++||+|++||||.|+|.+| .+..+++|||+.+|+++
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~-~~d~~~~~pk~~-~~i~s~~i~eG~g~~Gsir~~~~~~G-~~~~~~kErl~~~D~~~   77 (155)
T 1icx_A            1 GIFAFENEQSSTVAPAKLYKAL-TKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHD-GHTSFVLHKLDAIDEAN   77 (155)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHH-TTTHHHHHHHHS-TTEEEEEEEESSSSTTCEEEEEEESS-SSEEEEEEEEEEEEGGG
T ss_pred             CcEEEEEEEEecCCHHHHHHHH-hcCcchhcchhh-hhccEEEEEecCCCCCeEEEEEEecC-CcceeEEEEEEEEeccC
Confidence            5789999999999999999997 6 9998789999 57999999999999999999999987 66678999999999999


Q ss_pred             cEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 047051           81 HVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQC  159 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~  159 (164)
                      |+++|+++||+.+...|++|+++++|.|.++|+|+++|+++|++.++. ++|+.++..++.+.+|+|+||+||++|||+
T Consensus        78 ~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~-~~~~~~~~~~~~~~~~~k~ie~yll~~p~~  155 (155)
T 1icx_A           78 LTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPDY  155 (155)
T ss_dssp             TEEEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSS-CCHHHHTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CEEEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999999998744699999999999998778999999999999988 888878778899999999999999999986

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=100.00  E-value=1.6e-41  Score=264.05  Aligned_cols=153  Identities=22%  Similarity=0.417  Sum_probs=137.7

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhc-CcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            3 LGSIVGEYKSPIAVERLWKALIC-DAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~-d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      .++++.+++|++||++||+++++ ||++++|+|+|+++++|+++ |||++||||.|+|.+| ++..++||||+.+|+++|
T Consensus        28 ~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-GdGg~GsIR~lt~~~G-~~~~~vkErle~iDde~~  105 (201)
T 2vq5_A           28 TKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFVPG-EFPHEYKEKFILVDNEHR  105 (201)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SSSSTTCEEEEECCTT-CSSCEEEEEEEEEETTTT
T ss_pred             ceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cCCCCCeEEEEEecCC-CcccEEEEEEEEEchhhC
Confidence            57899999999999999999767 99987799999999999999 9999999999999988 666799999999999999


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCch
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ  158 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~  158 (164)
                      +++|+++||+.+..+|++|+++++|+|.++|+|+++|+++|++.++....++.. .+.+.+.+|+|+||+||++|||
T Consensus       106 ~~sYsiieGd~l~~~~~~y~~tikv~p~~dggs~vkWt~~ye~~~~~~~~~e~~-~~~~~~~~~~KaiE~yLlanp~  181 (201)
T 2vq5_A          106 LKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPL-ITTGPLAAMADAISKLVLEHKS  181 (201)
T ss_dssp             EEEEEEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGHHHHTTT-CCSHHHHHHHHHHHHHHHSCCC
T ss_pred             EEEEEEEecCccccceeEEEEEEEEEECCCCCeEEEEEEEEEECCCCCCCChhH-HHHHHHHHHHHHHHHHHHhCcc
Confidence            999999999987679999999999999988899999999999998662212111 3478899999999999999997

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=2.5e-39  Score=245.02  Aligned_cols=149  Identities=23%  Similarity=0.460  Sum_probs=136.8

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      .++++.+++|++||++||+++++||+. +|+|+|+.|++|++++|+ |++||||.|+|..| ++...+||||+.+|++++
T Consensus        16 ~~k~~~ev~i~apa~kvw~~~~~d~~~-lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~g-g~~~~~kErl~~iD~~~~   93 (166)
T 2i9y_A           16 VGKLETDVEIKASADKFHHMFAGKPHH-VSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHD-GEAKVAKERIEAVEPDKN   93 (166)
T ss_dssp             EEEEEEEEEESSCHHHHHGGGSSCSSC-CCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEET-TEEEEEEEEEEEEETTTT
T ss_pred             ccEEEEEEEecCCHHHHHHHHhccccc-ccccccccceEEEEEcCCCCCCCeEEEEEEecC-CCceEEEEEEEEEeccCc
Confidence            578999999999999999997568884 899999899999999999 89999999999988 677899999999999999


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCC-ceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCc
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDG-DCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANP  157 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg-~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~  157 (164)
                      +++|+++||+.+ .+|++|.++++|.|.++| +|+++|+++|++.++..++|+.+   .+.+.+|+|+||+||+++|
T Consensus        94 ~~~y~iieGd~~-~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~~~~p~~~---~~~~~~~~k~ie~~l~~~~  166 (166)
T 2i9y_A           94 LITFRVIEGDLM-KEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPETL---LQFCVEVSKEIDEHLLAEE  166 (166)
T ss_dssp             EEEEEECCTTGG-GTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTTTCCTHHH---HHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEEEEeCCCC-CCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHhhCC
Confidence            999999999984 789999999999998654 89999999999999888888655   6899999999999999986

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.97  E-value=1.6e-29  Score=193.91  Aligned_cols=114  Identities=18%  Similarity=0.320  Sum_probs=101.2

Q ss_pred             EEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecC-CCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEE
Q 047051            7 VGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEG-DGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRY   85 (164)
Q Consensus         7 ~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG-dg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y   85 (164)
                      ..+.+|++||++||+++ +||++ +|+|+| .|++| .++| +|++|+||.++|.+| .+...++|||+.+|+++|+++|
T Consensus        30 ~v~~~I~Apa~~VW~~v-~df~~-l~~w~P-~V~s~-~~eG~~ggvGsvR~lt~~~G-~p~~~vkErL~~~D~~~~~~sY  104 (183)
T 3rt2_A           30 TLVKHIKAPLHLVWSIV-RRFDE-PQKYKP-FISRC-VVQGKKLEVGSVREVDLKSG-LPATKSTEVLEILDDNEHILGI  104 (183)
T ss_dssp             EEEEEESSCHHHHHHHH-TCTTC-GGGTCT-TEEEE-EESSSCCCTTCEEEEEECCS-STTCEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEeCCHHHHHHHH-hCcCc-hhhcCc-cceEE-EeeCCCCCCCcEEEEEeCCC-CccceEEEEEEEEECCCCEEEE
Confidence            34459999999999996 89997 799999 59999 5689 789999999999987 5567899999999999999999


Q ss_pred             EEEeccccccceeEEEEEEEEeeCC-CC--ceeEEEEEEEEEcCCC
Q 047051           86 SIVEGGILGFKVNSYVADVTFTSSS-DG--DCFAKLKIEYESLGDS  128 (164)
Q Consensus        86 ~i~eg~~~~~~~~~y~~ti~v~~~~-dg--~s~v~w~~~~~~~~~~  128 (164)
                      +|++|++   ++++|+++++|.|.+ +|  +|+|+|+++|++..+.
T Consensus       105 ~Iieg~l---p~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g~  147 (183)
T 3rt2_A          105 RIVGGDH---RLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGN  147 (183)
T ss_dssp             EEEEESC---SCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTTC
T ss_pred             EEecCCc---ceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCCC
Confidence            9999986   799999999999987 65  6999999999986544

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.97  E-value=9.2e-30  Score=198.50  Aligned_cols=140  Identities=17%  Similarity=0.158  Sum_probs=108.4

Q ss_pred             EEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEE
Q 047051            8 GEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYS   86 (164)
Q Consensus         8 ~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~   86 (164)
                      ...+|++||++||+++ +||++ +|+|+| +|++|++++|+ |++|+||.|+|.+| ++..+++|||+.+|+++|+|+|+
T Consensus        58 v~~~I~ApadkVW~lv-~Df~~-l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G-~p~~~vkErL~~lDde~~~~sYs  133 (208)
T 3jrs_A           58 LAQRIHAPPETVWSVV-RRFDR-PQIYKH-FIKSCNVSEDFEMRVGCTRDVNVISG-LPANTSRERLDLLDDDRRVTGFS  133 (208)
T ss_dssp             EEEEESSCHHHHHHHH-TCTTC-GGGTCT-TEEEEECCTTCCCSTTCEEEEEECTT-SSCCEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCHHHHHHHH-hCcCC-hhHccc-cceEEEEecCCCCCCCeEEEEEecCC-CccceEEEEEEEEeccCCEEEEE
Confidence            3458999999999996 89997 799998 69999998897 59999999999988 66679999999999999999999


Q ss_pred             EEeccccccceeEEEEEEEEeeCCC-CceeEEEEEEEEEcCCCCC---ChHHHHH-HHHHHHHHHHHHHHHHh
Q 047051           87 IVEGGILGFKVNSYVADVTFTSSSD-GDCFAKLKIEYESLGDSLL---SEEDVRN-IKQGILTMVKAAERFLL  154 (164)
Q Consensus        87 i~eg~~~~~~~~~y~~ti~v~~~~d-g~s~v~w~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~k~ie~~l~  154 (164)
                      |++|++   |+++|+++++|.|.++ ++|.++|+++|+.-..+.+   .+++... +...+...|++|.+.+-
T Consensus       134 IieG~l---pv~~Y~sti~V~p~~~g~~t~V~Wt~~fes~~~D~p~g~~~e~a~~~~~~vy~~gL~~L~~~~e  203 (208)
T 3jrs_A          134 ITGGEH---RLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE  203 (208)
T ss_dssp             EEESSS---SCTTCEEEEEEEEEEC-----CEEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCc---ceeeEEEEEEEEEccCCCccEEEEEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999986   7999999999999654 4899999999995222222   2233322 22245556666655543

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.97  E-value=5.7e-29  Score=191.93  Aligned_cols=136  Identities=15%  Similarity=0.268  Sum_probs=107.8

Q ss_pred             EEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEEEE
Q 047051            9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIV   88 (164)
Q Consensus         9 e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~i~   88 (164)
                      ..+|++||++||+++ +||++  |++.|++|++|++++|+|++|+||.|+|.+| ++..+++|||+.+|+++|+++|+++
T Consensus        40 ~~~I~Apa~~vW~lv-~df~~--~~~w~p~I~s~e~~eGdg~vGsVR~~t~~~G-~p~~~vkErL~~iD~~~~~~sY~ii  115 (190)
T 3kl1_A           40 TQRIHAPASVVWPLI-RRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISG-LPASTSTERLEFVDDDHRVLSFRVV  115 (190)
T ss_dssp             EEEESSCHHHHHHHH-HCTTC--GGGTCSSEEEEEEEESSSSTTCEEEEEECSS-SSCEEEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCHHHHHHHH-hCCCC--hhHcccccCEEEEEcCCCCCCeEEEEEecCC-CccceEEEEEEEEeccCCEEEEEEE
Confidence            348999999999996 89997  5555557999999999999999999999988 6678999999999999999999999


Q ss_pred             eccccccceeEEEEEEEEee-----CCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHH
Q 047051           89 EGGILGFKVNSYVADVTFTS-----SSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFL  153 (164)
Q Consensus        89 eg~~~~~~~~~y~~ti~v~~-----~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l  153 (164)
                      +|++   ++++|++++++.+     .++++|+|+|+++|++..+.  .++.. +.+...+...+++|.+.+
T Consensus       116 eG~~---~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g~--~~e~~~~~~~~~~~~gL~~L~~~~  181 (190)
T 3kl1_A          116 GGEH---RLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGN--TEEDTKMFVDTVVKLNLQKLGVAA  181 (190)
T ss_dssp             EESS---SCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTTC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCC---ccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987   5778888888876     45568999999999965433  23333 333445555555555443

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.96  E-value=2.5e-28  Score=180.70  Aligned_cols=134  Identities=17%  Similarity=0.369  Sum_probs=112.7

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +++.+++|++||++||+++ +||++ +|+|+|. +++|++++|    |++|.+++.+|    ..++|||+.+|+++++++
T Consensus         3 ~v~~si~I~Ap~~~VW~~l-~d~~~-~~~w~p~-v~~~~~~~G----G~vR~~~~~~G----~~~~Erl~~~D~~~~~~~   71 (146)
T 3f08_A            3 HTTTSMEIFGSTEQVWQLI-GGFNS-LPDWLPY-IPSSKLTEG----GRVRHLANPDG----ETIIERLEVFNDKERYYT   71 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHH-CSTTC-HHHHCTT-CCEEEEEGG----GTEEEEECTTS----CEEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEEeCCHHHHHHHH-hcccc-HHHhCCC-eEEEEEeCC----CeEEEEEeCCC----CEEEEEEEEEeCCCCEEE
Confidence            5889999999999999996 89997 7999995 899998765    89999999877    379999999999999999


Q ss_pred             EEEEeccccccceeEEEEEEEEee-CCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHHhh
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTS-SSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~-~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l~~  155 (164)
                      |++++|++   |+++|.++++|.| .++++|+++|+.+|+|.+   ...+.. +.+...+...+++|.+.+..
T Consensus        72 y~iv~g~~---~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p~g---~~~~~~~~~~~~~~~~~L~~Lk~~~e~  138 (146)
T 3f08_A           72 YSIMNAPF---PVTNYLSTIQVKEGTESNTSLVEWSGTFTPVA---VSDEEAINLVHGIYSDGLKALQHAFLD  138 (146)
T ss_dssp             EEEEECSS---SEEEEEEEEEEEECSSTTCEEEEEEEEEEESS---SCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEecCCC---ceeEEEEEEEEEEecCCCcEEEEEEEEEEeCC---CCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999965   7999999999999 567799999999999843   233333 44556677777777776643

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.96  E-value=1.2e-28  Score=191.85  Aligned_cols=118  Identities=15%  Similarity=0.298  Sum_probs=106.0

Q ss_pred             cEEEEEEE--EecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCC
Q 047051            3 LGSIVGEY--KSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         3 ~~~~~~e~--~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~   80 (164)
                      .++++.++  +|++||++||+++ +||++ +++|+| +|++|++ +|+|++|+||.|+|.+| .+...++|||+.+|+++
T Consensus        49 ~~k~~~~V~~~I~ApadkVW~lV-~Df~~-l~kW~P-~V~s~ev-eGdg~vGsVR~vt~~~G-~p~~~vkErL~~lDde~  123 (205)
T 3oqu_A           49 ENQCTSALVKHIKAPLHLVWSLV-RRFDQ-PQKYKP-FVSRCTV-IGDPEIGSLREVNVKSG-LPATTSTERLELLDDEE  123 (205)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHH-TCTTC-GGGTCT-TEEEEEC-CSSCCTTCEEEEEECTT-SSCSEEEEEEEEEETTT
T ss_pred             CcEEEEEEeeEEcCCHHHHHHHH-hCcCC-hhHcCc-cceEEEe-eCCCCCCcEEEEEEcCC-CccceEEEEEEEEECCC
Confidence            46788889  9999999999995 89998 789998 6999986 89999999999999988 56678999999999999


Q ss_pred             cEEEEEEEeccccccceeEEEEEEEEeeCC-CC--ceeEEEEEEEEEcCCC
Q 047051           81 HVFRYSIVEGGILGFKVNSYVADVTFTSSS-DG--DCFAKLKIEYESLGDS  128 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~-dg--~s~v~w~~~~~~~~~~  128 (164)
                      |+|+|+|++|++   |+++|+++++|.|.+ +|  +|++.|+..+++..+.
T Consensus       124 ~~~sYsIieG~l---pv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~g~  171 (205)
T 3oqu_A          124 HILGIKIIGGDH---RLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGN  171 (205)
T ss_dssp             TEEEEEEEEESS---SCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCTTC
T ss_pred             CEEEEEEEecCc---ceeEEEEEEEEEEccCCCCceEEEEEEEeccCCCCC
Confidence            999999999985   799999999999998 45  6999999999876544

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.96  E-value=3.6e-28  Score=175.22  Aligned_cols=120  Identities=10%  Similarity=0.165  Sum_probs=104.1

Q ss_pred             Ccc-EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCC
Q 047051            1 MVL-GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         1 m~~-~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~   79 (164)
                      |+. ++++.++++++||+++|+++ ++++ ++| |.+                 +       | .   .   |++.+|++
T Consensus         1 m~~~g~~~~e~~i~~~a~k~w~~~-~~~~-~~p-~g~-----------------~-------G-~---~---~ie~iD~~   46 (122)
T 1vjh_A            1 STLKGALSVKFDVKCPADKFFSAF-VEDT-NRP-FEK-----------------N-------G-K---T---EIEAVDLV   46 (122)
T ss_dssp             CCSEEEEEEEEEESSCHHHHHHHH-HHHT-TSC-SST-----------------T-------C-E---E---EEEEEETT
T ss_pred             CCCCcEEEEEEEecCCHHHHHHHH-hhcc-cCC-ccC-----------------C-------C-c---c---EEEEEecc
Confidence            665 89999999999999999997 6876 677 422                 1       3 1   1   99999999


Q ss_pred             CcEEEEEEEeccccccceeEEEEEEEEeeCC-CCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCch
Q 047051           80 NHVFRYSIVEGGILGFKVNSYVADVTFTSSS-DGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ  158 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~-dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~  158 (164)
                      +++++|+++||+++ .+|++|+++++|+|.+ ++||+++|+++|++.++..++|+++   .+.+.+|+|+||+||++|||
T Consensus        47 ~~~~~y~iieGd~~-~~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~~---~~~~~~~~k~ie~yll~~p~  122 (122)
T 1vjh_A           47 KKTMTIQMSGSEIQ-KYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSI---IDESVKYFKKLDEAILNFKE  122 (122)
T ss_dssp             TTEEEEEEECTTGG-GTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHH---HHHHHHHHHHHHHHHHHC--
T ss_pred             cCEEEEEEEEcccc-ccEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHhhCCC
Confidence            99999999999976 6899999999999985 5689999999999999999999877   68899999999999999996

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=99.96  E-value=8.6e-29  Score=193.31  Aligned_cols=108  Identities=17%  Similarity=0.209  Sum_probs=98.4

Q ss_pred             EEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEEEE
Q 047051            8 GEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYS   86 (164)
Q Consensus         8 ~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~   86 (164)
                      ...+|++||++||+++ +||++ +++|+| +|++|++++|+| ++|+||.|+|.+| .+..+++|||+.+|+++|+|+|+
T Consensus        54 v~~~I~ApadkVW~lv-~dF~~-l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G-~p~~~vkErL~~lDd~~~~~sYs  129 (211)
T 3k3k_A           54 HAQRIHAPPELVWSIV-RRFDK-PQTYKH-FIKSCSVEQNFEMRVGCTRDVIVISG-LPANTSTERLDILDDERRVTGFS  129 (211)
T ss_dssp             EEEEESSCHHHHHHHH-TCTTC-GGGTCS-SEEEEECCTTCCCCTTCEEEEEESSS-SSCEEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEcCCHHHHHHHH-hCcCC-hhHcCc-cceEEEEecCCCCCCCcEEEEEecCC-CccceEEEEEEEEeccCCEEEEE
Confidence            3458999999999996 89997 789998 699999988974 8999999999988 66779999999999999999999


Q ss_pred             EEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEE
Q 047051           87 IVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYES  124 (164)
Q Consensus        87 i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~  124 (164)
                      |++|++   |+++|+++++|.|.++|+  ++|+++|+.
T Consensus       130 Iieg~l---pv~~Y~sti~V~p~~~gg--V~Wt~~fes  162 (211)
T 3k3k_A          130 IIGGEH---RLTNYKSVTTVHRFEKEN--RIWTVVLES  162 (211)
T ss_dssp             EEEETT---GGGTCEEEEEEEEEEETT--EEEEEEEEE
T ss_pred             EeecCc---ceeEEEEEEEEEECCCCC--EEEEEEEEE
Confidence            999986   799999999999998765  999999995

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.96  E-value=3.2e-27  Score=177.48  Aligned_cols=132  Identities=19%  Similarity=0.312  Sum_probs=111.3

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC--CcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG--GVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg--~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      +++.+++|++||++||+++ +||++ + +|+|.++++|++++|+|  ++|++|.+   ++     .++|||+.+|+++++
T Consensus         3 ~v~~si~I~Ap~~~VW~~v-~Df~~-~-~w~P~v~~s~e~~eg~~~~~vGsvR~~---gg-----~v~Erl~~~D~~~~~   71 (160)
T 3p51_A            3 KVYNSIVVDAPVERVWSRI-RNFHD-F-SWAPSLIKSCKKVGGGGGYSVGARRLL---NG-----EFLDTLIAYSEIERR   71 (160)
T ss_dssp             EEEEEEEESSCHHHHHHHH-CCTTC-C-TTCTTTCCCEEEESSCCTTCTTCEEEE---TT-----TEEEEEEEEETTTTE
T ss_pred             EEEEEEEECCCHHHHHHHH-hCcCC-C-eEccCceEEEEEEecCCCCCCCCEEEE---CC-----EEEEEEEEEcCCCcE
Confidence            4788999999999999996 89998 6 99998777779998874  89999998   23     689999999999999


Q ss_pred             EEEEEEeccccccc-----eeEEEEEEEEeeCC-CCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051           83 FRYSIVEGGILGFK-----VNSYVADVTFTSSS-DGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~-----~~~y~~ti~v~~~~-dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  155 (164)
                      ++|++++|++   |     +++|.++++|.|.+ +++|+|+|+++|++.+     +...+.+...+...++.|.+.+.+
T Consensus        72 ~sY~ii~g~l---~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~-----~~~~~~~~~~~~~~L~~Lk~~~e~  142 (160)
T 3p51_A           72 IMYSMDEGPS---PVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS-----TEAVEYMNTVYRSLLADLAAEFTS  142 (160)
T ss_dssp             EEEEEEECST---TSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESC-----SHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             EEEEEecCCC---cccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH-----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999975   5     99999999999986 6799999999999974     122233456777788888776654

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=99.95  E-value=5.5e-27  Score=180.00  Aligned_cols=141  Identities=16%  Similarity=0.204  Sum_probs=109.3

Q ss_pred             EEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEec-CCCC----cccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            7 VGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLE-GDGG----VGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         7 ~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~e-Gdg~----~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ....+|+||+++||+++ +||++ ++.|+| +|++|++++ |+|+    +|+||.|+|.+| .+..+++|||+.+|+++|
T Consensus        33 ~~~~~I~Ap~d~VWalV-rdF~~-p~~w~p-~V~s~~~~e~Gdg~~~~~vGsVR~ltl~~G-~P~~~i~ErL~~lDde~~  108 (189)
T 3oji_A           33 LIAHRVDAPAHAIWRFV-RDFAN-PNKYKH-FIKSCTIRVNGNGIKEIKVGTIREVSVVSG-LPASTSVEILEVLDEEKR  108 (189)
T ss_dssp             EEEEEESSCHHHHHHHH-SCTTC-GGGTCT-TEEEEEECCC----CCCSTTCEEEEEECSS-SSBSEEEEEEEEEETTTT
T ss_pred             eEEEEEcCCHHHHHHHH-hCCCC-hhhCcc-ccceEEEEecCCCCccCCCCcEEEEEecCC-CcCceEEEEEEEEeccCC
Confidence            45678999999999995 99997 778888 699999987 8876    999999999988 566789999999999999


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCC---CC-----ceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHH
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSS---DG-----DCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERF  152 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~---dg-----~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~  152 (164)
                      +++|+|++|++   ++++|+++++|.|..   +|     +|++.|+..+++..++.  ++.. ......+...|++|.+.
T Consensus       109 ~~sY~Iieg~~---pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~t--~e~~~~~v~~v~~~gL~~L~~~  183 (189)
T 3oji_A          109 ILSFRVLGGEH---RLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNT--EEDTRMFVDTVVKSNLQNLAVI  183 (189)
T ss_dssp             EEEEEEEECSB---SSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTSC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCC---ccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999986   799999999999853   23     69999999998654442  3333 33444556666676665


Q ss_pred             HhhC
Q 047051          153 LLAN  156 (164)
Q Consensus       153 l~~~  156 (164)
                      .-+.
T Consensus       184 ~e~~  187 (189)
T 3oji_A          184 STAS  187 (189)
T ss_dssp             HHC-
T ss_pred             hhcC
Confidence            5443

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.93  E-value=4.7e-25  Score=162.29  Aligned_cols=139  Identities=12%  Similarity=0.116  Sum_probs=112.8

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      +++.+++|++|+++||+++ .|+++ +|+|+|. +++|++++|+ +++|++|.+++.+|    ..++|+|+.+|++++++
T Consensus         3 ~v~~si~I~ap~e~Vw~~l-~d~~~-~~~w~p~-v~~~~~~~g~~~~~G~~r~~~~~~G----~~~~e~i~~~d~~~~~~   75 (151)
T 2le1_A            3 TLRRSVEVAAPAADVWTLV-GDFSA-IHRWHPQ-VSAPTLRGASPHTPGAERVFGAGTE----EELVERLVERDESARRL   75 (151)
T ss_dssp             EEEEEEEESSCHHHHHHHH-TTSGG-GGGTCTT-CCCEEEESSCTTSTTCEEEESSSSS----SCEEEEEEEEETTTTEE
T ss_pred             eEEEEEEecCCHHHHHHHH-hCcCc-HHHhcCC-ceEEEEECCCCCCCCeEEEEEeCCC----CEEEEEEEEEeCCCCEE
Confidence            7889999999999999996 89997 7999997 8899998876 68999999999765    26999999999999999


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEc-CCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESL-GDSLLSEEDVRNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  155 (164)
                      +|++++|+.   ++++|.++++|+|.++++|+++|+.+|++. .+  ........+...+...++.|.+++.+
T Consensus        76 ~~~~~~g~~---~~~~~~~~~~l~~~~~~gt~v~w~~~f~~~p~~--~~~~~~~~~~~~~~~~L~~Lk~~~e~  143 (151)
T 2le1_A           76 VYTMPDPPF---PITNHRAVLEVVPRDDRHCTVVWTAMFDCSPET--ARELESVIGDGVFAVGLNALAERYGR  143 (151)
T ss_dssp             EEEEEECSS---SEEEEEEEEEEEESSSSCEEEEEEEEEEECHHH--HHHHHHHTTTTHHHHHHHHHHHHTTT
T ss_pred             EEEEecCCC---CceeEEEEEEEEECCCCcEEEEEEEEEEecCCC--CCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999864   699999999999976678999999999972 11  11111112234667777777776544

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.75  E-value=1.9e-16  Score=118.43  Aligned_cols=142  Identities=13%  Similarity=0.143  Sum_probs=102.7

Q ss_pred             CccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEE--eecCCcceeEEEEEEEEeeC
Q 047051            1 MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFN--FTEAVKEFRYVKDRVEIMDN   78 (164)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~--~~~g~~~~~~~kErl~~~D~   78 (164)
                      |+. ++++++.|++||++||+++ .|+.+ +|.|+|. +.++++++++|..-.+| ++  ..-+ |....+..+.. +|+
T Consensus         1 M~~-~v~~si~I~a~~~~V~~lV-~Dve~-yP~~~p~-~~~~~vl~~~~~~~~~r-l~~~~~~~-G~~~~~ts~~~-~d~   73 (159)
T 3tl1_A            1 MAG-HTDNEITIAAPMELVWNMT-NDIEK-WPGLFSE-YASVEVLGRDDDKVTFR-LTMHPDAD-GKVWSWVSERV-ADP   73 (159)
T ss_dssp             CCS-EEEEEEEESSCHHHHHHHH-TCGGG-HHHHCSS-EEEEEEEEECSSEEEEE-EEECCCTT-SCCCEEEEEEE-EET
T ss_pred             CCC-eeEEEEEecCCHHHHHHHH-HhHHH-hhhhhhC-ceEEEEEecCCCEEEEE-EEEEeccC-ceEEEEEEEEE-EcC
Confidence            543 6899999999999999995 89997 9999997 77889887765322333 33  3322 22234444444 899


Q ss_pred             CCcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHHh
Q 047051           79 ENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        79 ~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l~  154 (164)
                      ..++++|++++.+    |++++.++++|+|.++ +|.|+|+.+|+..++...+.+.+ +++...+...+.+|.+.+-
T Consensus        74 ~~~~I~~~~~~~g----Pf~~l~g~W~f~p~~~-gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E  145 (159)
T 3tl1_A           74 VTRTVRAQRVETG----PFQYMNIVWEYAETAE-GTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIE  145 (159)
T ss_dssp             TTTEEEEEESSCT----TEEEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEccCC----ChhhccCEEEEEECCC-CEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999987443    5899999999999987 69999999999987654444333 3445555666666665543

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.74  E-value=2.8e-16  Score=118.68  Aligned_cols=141  Identities=11%  Similarity=0.141  Sum_probs=100.3

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEE-EE--eecCCcceeEEEEEEEEeeC
Q 047051            2 VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKK-FN--FTEAVKEFRYVKDRVEIMDN   78 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~-~~--~~~g~~~~~~~kErl~~~D~   78 (164)
                      -...++.++.|++||++||+++ .|+.+ +|+|+|. +.+++++++++  +.+|. +.  ...+ |....+..+.. +|+
T Consensus         1 Ma~~v~~si~I~a~~~~v~~lv-~Dv~~-~p~w~p~-~~~~~~~~~~~--~~~~~~l~~~~~~~-G~~~~~ts~~~-~d~   73 (169)
T 3tvq_A            1 MAARTDNSIVVNAPFELVWDVT-NDIEA-WPELFSE-YAEAEILRQDG--DGFDFRLKTRPDAN-GRVWEWVSHRV-PDK   73 (169)
T ss_dssp             CCEEEEEEEEESSCHHHHHHHH-TCGGG-HHHHCTT-EEEEEEEEEET--TEEEEEEEECCCTT-SCCCEEEEEEE-EEG
T ss_pred             CCCeEEEEEEecCCHHHHHHHH-HhhhH-HHHHHhh-eeEEEEEecCC--CEEEEEEEEEecCC-CeEEEEEEEEE-EcC
Confidence            0356899999999999999995 89997 9999997 78889887654  22332 32  1222 22233444433 799


Q ss_pred             CCcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHHh
Q 047051           79 ENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        79 ~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l~  154 (164)
                      ..++++|+.++++    |+++|.++++|+|.++| |.|+|+.+|+..++...+...+ +++...+..++.+|.+.+-
T Consensus        74 ~~~~I~~~~l~~g----Pf~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE  145 (169)
T 3tvq_A           74 GSRTVRAHRVETG----PFAYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIE  145 (169)
T ss_dssp             GGTEEEEEESSCT----TEEEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEcCCC----ChhheeeEEEEEECCCC-EEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999976543    58999999999999886 9999999999987654444333 3344455666666665543

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.71  E-value=1.3e-15  Score=114.53  Aligned_cols=143  Identities=13%  Similarity=0.182  Sum_probs=103.1

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      .+++.++.|++|+++||+++ .|+.+ +|+|+|. +.++++++++++ +..-.+....+ |....+..+++ +|+..+++
T Consensus         5 ~~v~~si~I~ap~~~V~~~v-~D~~~-~p~~~P~-~~~~~v~~~~~~-~~~~~~~~~~~-G~~~~~~s~~~-~~~~~~~i   78 (172)
T 3tfz_A            5 RHVEHTVTVAAPADLVWEVL-ADVLG-YADIFPP-TEKVEILEEGQG-YQVVRLHVDVA-GEINTWTSRRD-LDPARRVI   78 (172)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HCGGG-HHHHCSS-EEEEEEEEEETT-EEEEEEEEEET-TEEEEEEEEEE-EETTTTEE
T ss_pred             cEEEEEEEeCCCHHHHHHHH-HhHHH-HHhhCcc-cceEEEEecCCC-EEEEEEEEecC-CEEEEEEEEEE-EeCCCCEE
Confidence            57899999999999999996 89997 9999997 889998875432 12222444433 32334555655 88889999


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC---CC-----hHH---H-HHHHHHHHHHHHHHHH
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL---LS-----EED---V-RNIKQGILTMVKAAER  151 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~---~~-----~~~---~-~~~~~~~~~~~k~ie~  151 (164)
                      .|++++++.   +++.+.++++|.|.++++|.|+|+.+|+..+...   +.     +..   + +.+...+.+.+.+|.+
T Consensus        79 ~~~~~~~~g---pf~~~~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~  155 (172)
T 3tfz_A           79 AYRQLETAP---IVGHMSGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLG  155 (172)
T ss_dssp             EEEEEECCT---TEEEEEEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCC---ChhhcEEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHH
Confidence            999997654   6899999999999987899999999999875321   11     211   1 2244455667777777


Q ss_pred             HHhh
Q 047051          152 FLLA  155 (164)
Q Consensus       152 ~l~~  155 (164)
                      ++-+
T Consensus       156 ~aE~  159 (172)
T 3tfz_A          156 EAER  159 (172)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6644

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.68  E-value=1.2e-14  Score=103.33  Aligned_cols=139  Identities=19%  Similarity=0.257  Sum_probs=99.1

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +++.++.|++|+++||+++ .|+.+ +|+|+|. +.+++++++++ .|....+++..+ +....+..++. .++.++++.
T Consensus         3 ~~~~~~~i~ap~~~V~~~l-~d~~~-~~~w~p~-~~~~~~~~~~~-~g~~~~~~~~~~-g~~~~~~~~~~-~~~~~~~i~   76 (147)
T 2d4r_A            3 EVRAERYIPAPPERVYRLA-KDLEG-LKPYLKE-VESLEVVAREG-ARTRSRWVAVAM-GKKVRWLEEEE-WDDENLRNR   76 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHH-HCHHH-HGGGCTT-EEEEEEEEEET-TEEEEEEEEEET-TEEEEEEEEEE-EETTTTEEE
T ss_pred             eEEEEEEeCCCHHHHHHHH-hChhh-hhhhccc-ccEEEEEEeCC-CccEEEEEEEeC-CceEEEEEEEE-EcCCCcEEE
Confidence            6788899999999999996 89996 8999997 77888776432 255556665533 22233566665 457778899


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCC--ChHHH-HHHHHHHHHHHHHHHHHHhh
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLL--SEEDV-RNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~k~ie~~l~~  155 (164)
                      |++.+|+     +..+.++++|+|.++| |.+.|+.+|++.+....  -.-.+ ...++.+..+++++++++.+
T Consensus        77 ~~~~~g~-----~~~~~~~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  144 (147)
T 2d4r_A           77 FFSPEGD-----FDRYEGTWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLA  144 (147)
T ss_dssp             EEEEEES-----CSEEEEEEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCC-----hhheEEEEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9998774     4678999999999875 99999999998753211  11111 22446677777777776654

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.64  E-value=1e-14  Score=108.48  Aligned_cols=132  Identities=13%  Similarity=0.110  Sum_probs=97.4

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      ..+++.++.|+||+++||+++ .|+.+ +|.|.|. +.++++ +|+-.+|+.+.++...+ +   .+.++|+.+|+..+ 
T Consensus        17 ~~~i~~si~I~Appe~VW~~l-tD~~~-~~~W~p~-v~~~~~-~G~~~~G~~~~~~~~~~-~---~~~~~v~~~~p~~~-   87 (155)
T 3ijt_A           17 SMKFSFELAVNTKKEDAWTYY-SQVNQ-WFVWEGD-LEQISL-EGEFTTGQKGKMKMEDM-P---ELAFTLVEVRENQC-   87 (155)
T ss_dssp             CEEEEEEEEESSCHHHHHHHH-HCGGG-GGGTSTT-EEEEEE-SSSSSTTCEEEEEETTS-C---CEEEEECCCBTTTE-
T ss_pred             cEEEEEEEEEcCCHHHHHHHH-hCccc-ccccchh-hEeeec-cCCCCCCCEEEEEeCCC-C---cEEEEEEEEeCCcE-
Confidence            457999999999999999997 79996 9999996 788875 67657899988887655 2   57889999988876 


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH---HHHHHHHHHHHHHHHHH
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV---RNIKQGILTMVKAAERF  152 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~ie~~  152 (164)
                      ++|+..   .   |...|..+..|+|.++++|+++|+.+|+-   ..+.+...   +.+.+.+..++.+|.++
T Consensus        88 ~~~~~~---~---p~~~~~~~h~l~p~~~ggTrvt~~~~~~G---~~~~~~~~~~~~~i~~~~~~~l~~LK~~  151 (155)
T 3ijt_A           88 FSDLTA---T---PFGNVLFEHEILENPDGTISLRHSVSLTD---SDTTEEALAFLKQIFADVPESVGKLKQI  151 (155)
T ss_dssp             EEEEEE---E---TTEEEEEEEEEEECTTSCEEEEEEEEESC---CSCCHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             EEEEEe---c---CCeEEEEEEEEEEcCCCcEEEEEEEEEEC---CCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            777642   2   34577888899998778999999999942   22223322   23344444555555443

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.49  E-value=5.5e-12  Score=92.75  Aligned_cols=145  Identities=14%  Similarity=0.075  Sum_probs=94.2

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEE--EEEEEeeCCCcE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVK--DRVEIMDNENHV   82 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~k--Erl~~~D~~~~~   82 (164)
                      +++.++.|++|+++||+++ .|+.+ +|+|+|+ +.+++...|+   +....+++..| +-...+.  -++..+|+.. +
T Consensus         4 ~i~~~~~i~ap~e~Vw~~l-~D~e~-~~~w~p~-~~~~~~~~~~---~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~   75 (162)
T 2pcs_A            4 NGNGSIELKGTVEEVWSKL-MDPSI-LSKCIMG-CKSLELIGED---KYKADLQIGIA-AVKGKYDAIIEVTDIKPPY-H   75 (162)
T ss_dssp             EEEEEEEEESCHHHHHHHH-TCHHH-HHHHSTT-EEEEEEEETT---EEEEEEEECCG-GGCEEEEEEEEEEEEETTT-E
T ss_pred             EEeeEEEecCCHHHHHHHh-cCHHH-HHhhCCC-ceEeEEeCCC---eEEEEEEEEee-eEEEEEEEEEEEEecCCCc-E
Confidence            4889999999999999997 89996 9999997 6788876432   12223444333 1112333  3555667654 5


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC-CChHHH-HHHHHHHHHHHHHHHHHHhhCchh
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL-LSEEDV-RNIKQGILTMVKAAERFLLANPQC  159 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~k~ie~~l~~~~~~  159 (164)
                      ++++....+.  .+...+.++++|+|.++++|.+.|+.+++..+... +....+ ..+++.+..+++++.++|.+...+
T Consensus        76 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~~~~  152 (162)
T 2pcs_A           76 YKLLVNGEGG--PGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKSKQE  152 (162)
T ss_dssp             EEEEEEEEET--TEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             EEEEEEecCC--CccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence            6666542221  14456799999999666789999999999865321 122222 235566788888888888765543

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.48  E-value=2.8e-12  Score=94.46  Aligned_cols=141  Identities=11%  Similarity=0.147  Sum_probs=91.6

Q ss_pred             CccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCc-ceeEEEEEEEEeeCC
Q 047051            1 MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVK-EFRYVKDRVEIMDNE   79 (164)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~-~~~~~kErl~~~D~~   79 (164)
                      |+..+++.++.|++|+++||+++ .|+.+ +|+|+|+ +.+++++++.    . -.|.+....| ....+.-+++..+ .
T Consensus         1 ~~~~~v~~s~~I~ap~e~V~~~~-~D~e~-~p~w~p~-~~~v~~~~~~----~-~~~~~~~~~G~~~~~~~~~v~e~~-p   71 (155)
T 3ggn_A            1 MGETVVRDAVTIGKPAEQLYAVW-RDLPG-LPLLMTH-LRSVEVLDDK----R-SRWTVEAPAPLGTVSWEAELTADE-P   71 (155)
T ss_dssp             ---CEEEEEEEESSCHHHHHHHH-HCGGG-HHHHSTT-CCEEEECSSS----E-EEEEEECCTTTCEEEEEEEEEEEE-T
T ss_pred             CCccEEEEEEEEcCCHHHHHHHH-hCHHH-hHHHhhh-ceEEEEecCC----e-eEEEEEecCCcceEEEEEEEEEec-C
Confidence            78889999999999999999996 89997 9999997 7888876442    1 2333332112 2234677777554 4


Q ss_pred             CcEEEEEEEeccccccceeEEEEEEEEeeC-CCCceeEEEEEEEEEcCCC---CCChHHHH-HHHHHHHHHHHHHHHHHh
Q 047051           80 NHVFRYSIVEGGILGFKVNSYVADVTFTSS-SDGDCFAKLKIEYESLGDS---LLSEEDVR-NIKQGILTMVKAAERFLL  154 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~-~dg~s~v~w~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~k~ie~~l~  154 (164)
                      .+.+.|+.++|+.     ..+.++++|+|. ++++|.++++++|++.++.   ...+- +. ...+.+.+.++++.+++-
T Consensus        72 ~~~i~~~~~~g~~-----~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~-~~~~~~~~v~~~l~r~k~~~e  145 (155)
T 3ggn_A           72 GKRIAWRSLPGAR-----IENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARM-FNQEPSQQLRDDLMRFKREQE  145 (155)
T ss_dssp             TTEEEEEECTTCS-----SCEEEEEEEEECSSSSCEEEEEEEEEC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCC-----cceEEEEEEEECCCCCceEEEEEEEEECCCcHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHH
Confidence            5668999987752     467889999998 4668999999999986522   11111 11 234455666666666665


Q ss_pred             hC
Q 047051          155 AN  156 (164)
Q Consensus       155 ~~  156 (164)
                      ..
T Consensus       146 ~~  147 (155)
T 3ggn_A          146 LG  147 (155)
T ss_dssp             HT
T ss_pred             hh
Confidence            43

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.48  E-value=8.5e-13  Score=96.10  Aligned_cols=135  Identities=16%  Similarity=0.167  Sum_probs=96.3

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC--C-CcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD--G-GVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd--g-~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      +++.++.|++|+++||+++ .|+.+ +|+|+|+ ++++++++.+  | +-+....+.+.-+ +-...+..|++ +|+.++
T Consensus         3 ~~~~s~~i~ap~~~v~~~v-~D~~~-~p~~~p~-~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~v~-~~~~~~   77 (148)
T 1t17_A            3 RHVVTKVLPYTPDQLFELV-GDVDA-YPKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFS-FLREKFATRVR-RDKDAR   77 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHH-TTTTC-CSSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTT-SSCCEEEEEEE-EETTTC
T ss_pred             EEEEEEEecCCHHHHHHHH-HHHhh-HHhhCCC-cCeeEEEEecCCCCCceEEEEEEEEec-ceeEEEEEEEE-EcCCCc
Confidence            6788999999999999996 89997 9999997 6677776532  2 1234445655433 22245677777 688777


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-H-HHHHHHHHHHHHHHHHH
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-R-NIKQGILTMVKAAERFL  153 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~k~ie~~l  153 (164)
                      ++.+++++|     +++.+.++++|.|.++| |.++++.+|+..+.   -...+ . -..+.+..|++++++.+
T Consensus        78 ~i~~~~~~G-----~f~~~~g~w~f~~~~~g-t~v~~~~~~~~~~~---l~~~l~~~~~~~~~~~~~~~f~~r~  142 (148)
T 1t17_A           78 SIDVSLLYG-----PFKRLNNGWRFMPEGDA-TRVEFVIEFAFKSA---LLDAMLAANVDRAAGKLIACFEARA  142 (148)
T ss_dssp             EEEEEESST-----TSSCEEEEEEEEEETTE-EEEEEEEEECCSCH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCC-----ChhccEEEEEEEECCCC-eEEEEEEEEEECcH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999887     36788999999999876 99999999998641   11222 1 13345556666666554

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.38  E-value=9e-11  Score=85.27  Aligned_cols=138  Identities=12%  Similarity=0.127  Sum_probs=86.7

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEE--EEEEeeCCCcE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKD--RVEIMDNENHV   82 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kE--rl~~~D~~~~~   82 (164)
                      +++.++.|++|+++||+++ .|+.+ +|+|+|+ +.+++ .+|+   +....++...+ +-...++-  ++..+|+. ++
T Consensus        14 ~i~~~~~i~ap~e~Vw~~l-~D~~~-~~~w~p~-~~~~~-~~~~---~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-~~   84 (157)
T 2ns9_A           14 RYEGSFEVSKTPEEVFEFL-TDPKR-FSRAFPG-FKSVE-VEDG---SFTIELRLSLG-PLRGDARVRASFEDLEKP-SK   84 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHH-TCHHH-HGGGSTT-EEEEE-EETT---EEEEEEEEESS-SSEEEEEEEEEEEEEETT-TE
T ss_pred             EEeeEEEEcCCHHHHHHHH-cCHHH-HHhhCCC-ceEEE-ECCC---EEEEEEEEEEc-ceeEEEEEEEEEEecCCC-cE
Confidence            6899999999999999997 89996 8999997 67777 4442   12222333333 11122333  45466664 45


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC-CChHHHH-HHHHHHHHHHHHHHHHHh
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL-LSEEDVR-NIKQGILTMVKAAERFLL  154 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~k~ie~~l~  154 (164)
                      +.|+....+.. .++ .+.++++|+|.+ ++|.+.|+.+|+..+... +....++ .+.+.+..+++++.+++.
T Consensus        85 i~~~~~~~~~~-~~~-~~~~~~~l~~~~-~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e  155 (157)
T 2ns9_A           85 ATVKGSGRGAG-STL-DFTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELG  155 (157)
T ss_dssp             EEEEEEEECSS-EEE-EEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEecCCC-ccE-EEEEEEEEEeCC-CcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77764322211 134 378999999987 689999999998765211 2222232 234456666666666653

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=99.31  E-value=3e-10  Score=84.26  Aligned_cols=111  Identities=13%  Similarity=0.116  Sum_probs=80.2

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEe---ecCCcc-eeEEEEEEEEeeC
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNF---TEAVKE-FRYVKDRVEIMDN   78 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~---~~g~~~-~~~~kErl~~~D~   78 (164)
                      ..++++++.|++||++||+++ .|+.+ +|.+.|+++.- +- .++|   . ..+..   .-|... ...+..|.+ .|+
T Consensus         6 ~i~v~~s~~I~ap~e~v~~lv-~Dve~-w~~~yp~~~p~-~~-~~~~---~-~~~~~a~l~vg~~~~~~~~~s~~~-~~~   76 (161)
T 3p9v_A            6 SIELNRDLEIPASYDEVFDLL-ADVPK-SASHFPKVDKL-VD-LGNN---A-YRWEMEKVGVDKHAIQSVYACTYH-ADK   76 (161)
T ss_dssp             EEEEEEEEEESSCHHHHHHHH-TCHHH-HHTTSTTEEEE-EE-EETT---E-EEEEECCBSSGGGCBCCEEEEEEE-EET
T ss_pred             EEEEEEEEEEcCCHHHHHHHH-hChhh-hHhhCCCeEEE-EE-cCCC---c-eEEEEEEEeeeeEEEEEEEEEEEE-EcC
Confidence            356899999999999999996 89997 78888875433 22 2332   2 22333   222011 124556655 777


Q ss_pred             CCcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051           79 ENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG  126 (164)
Q Consensus        79 ~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~  126 (164)
                      +.+++.+++++|+.    .++..++++|+|.++|+|.|+|+++|+...
T Consensus        77 ~~~~I~~~~~~g~~----~~~l~g~w~f~p~~~g~t~V~~~~~~e~~~  120 (161)
T 3p9v_A           77 EAGKITWSPIKGEG----NGVVSGSWTLSAKGDNATAVKFQTSAELTV  120 (161)
T ss_dssp             TTTEEEEEECTTST----TEEEEEEEEEEESSSSCEEEEEEEEEEEEE
T ss_pred             CCCEEEEEEecCcc----ceeEEEEEEEEECCCCeEEEEEEEEEEEcC
Confidence            78899999987753    378899999999998889999999999973

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=99.10  E-value=2.7e-08  Score=73.59  Aligned_cols=147  Identities=11%  Similarity=0.044  Sum_probs=92.7

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCc
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ..+++.++.|++|+++||+++ .|+.. +++|.+..--.+...+++-.+|..-.+.+. ++ |..-...-++..+++.++
T Consensus        13 ~~~i~~~~~i~ap~e~Vw~al-tdp~~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~~~v~e~~p~~r   89 (171)
T 2il5_A           13 HVEVEIEKLYKFSPELVYEAW-TKKDL-LKQWFMTSARTNKEIEADVKEGGKYRIVDQQRN-GKVNVIEGIYESLVMDEY   89 (171)
T ss_dssp             EEEEEEEEEESSCHHHHHHHT-TCHHH-HTTTSSSCTTTEEEEEECCSTTCEEEEEEECGG-GCEEEEEEEEEEEETTTE
T ss_pred             CceEEEEEEeCCCHHHHHHHH-CCHHH-HHhccCCCCccceEEEecccCCCEEEEEEECCC-CCEEEEEEEEEEEcCCCE
Confidence            357889999999999999997 79995 888875321122223445445554444443 22 222236678888887554


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCC--------hHHHHHHHHHHHHHHHHHHHHH
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLS--------EEDVRNIKQGILTMVKAAERFL  153 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~k~ie~~l  153 (164)
                       +.|+...++.   +-.....++.|+|.++|+|+++++.+..+..+...+        ++..+.+.+....++..|+++|
T Consensus        90 -l~~~~~~~~~---~~~~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~l  165 (171)
T 2il5_A           90 -VKMTIGMPGL---SETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVI  165 (171)
T ss_dssp             -EEEEESCC-----CCCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEEEecCC---CCCcEEEEEEEEECCCCCEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence             7888754332   222467899999998768999999875543211111        1222345667778888888888


Q ss_pred             hhC
Q 047051          154 LAN  156 (164)
Q Consensus       154 ~~~  156 (164)
                      .+.
T Consensus       166 e~~  168 (171)
T 2il5_A          166 ETS  168 (171)
T ss_dssp             HTT
T ss_pred             hhc
Confidence            654

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=99.09  E-value=1.1e-08  Score=73.25  Aligned_cols=139  Identities=17%  Similarity=0.083  Sum_probs=91.5

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee--cCCcceeEEEEEEEEeeCCCc
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT--EAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~--~g~~~~~~~kErl~~~D~~~~   81 (164)
                      .+++.++.|++|+++||+++ .|+.. +++|.++.--.+...+++-.+|..-.+.+.  .+ +......-++..+++.. 
T Consensus         3 ~~~~~~~~i~ap~e~Vw~al-td~~~-~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~-g~~~~~~~~v~~~~p~~-   78 (147)
T 1z94_A            3 NTIRLHRVLSAPPERVYRAF-LDPLA-LAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFAS-GQKHAFGGRYLELVPGE-   78 (147)
T ss_dssp             CCEEEEEEESSCHHHHHHHT-TCHHH-HHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTT-CCEEEEEEEEEEEETTT-
T ss_pred             cEEEEEEEeCCCHHHHHHHh-CCHHH-HhhccCCCCEeeeEEEEccCCCcEEEEEEEECCC-CCEEEEEEEEEEEcCCC-
Confidence            35778889999999999997 79995 899987421122222344445555555544  22 22235777888888755 


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  155 (164)
                      ++.|+...++..  .-.....++.|+|.++ +|+++++.++.+..      +......+....++.+|+++|.+
T Consensus        79 ~l~~~~~~~~~~--~~~~~~~~~~l~~~~~-gT~l~~~~~~~~~~------~~~~~~~~gw~~~L~~L~~~le~  143 (147)
T 1z94_A           79 RIRYTDRFDDAG--LPGDMITTITLAPLSC-GADLSIVQEGIPDA------IPPENCYLGWQQSLKQLAALVEP  143 (147)
T ss_dssp             EEEEEEEESCCC-----CEEEEEEEEEETT-EEEEEEEEECCCTT------SCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEEEEeCCC--CCCcEEEEEEEEecCC-CEEEEEEEEcCCch------hhHHHHHHHHHHHHHHHHHHHHh
Confidence            588887655321  1124678899999864 79999999875321      11233467788888999888764

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=99.07  E-value=3.4e-08  Score=70.29  Aligned_cols=137  Identities=14%  Similarity=0.126  Sum_probs=91.3

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      .+++.++.|++|+++||+++ .|+.+ +++|.++..  +   +++-.+|..-.+....+ +..-.+..++..+++.. ++
T Consensus         5 ~~i~~~~~i~ap~e~Vw~~l-td~~~-~~~W~~~~~--~---~~~~~~G~~~~~~~~~~-g~~~~~~~~v~~~~p~~-~l   75 (146)
T 2leq_A            5 LIAQVKTVINAPIEKVWEAL-VNPEI-IKEYMFGTT--V---VSDWKEGSQIVWKGEWK-GKAYEDKGTILQFNERS-IL   75 (146)
T ss_dssp             EEEEEEEEECSCHHHHHHHH-SCTTH-HHHHSSSCE--E---ECCCSTTCEEEEEEEET-TEEEEEEEEEEEEETTT-EE
T ss_pred             ceEEEEEEECCCHHHHHHHH-cCHHH-hceeEcCCc--c---eeccCCCCEEEEEecCC-CceecccEEEEEEcCCC-EE
Confidence            57899999999999999997 89995 899963222  2   23334455555655554 32224678888888754 57


Q ss_pred             EEEEEecc-c-cccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC
Q 047051           84 RYSIVEGG-I-LGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        84 ~Y~i~eg~-~-~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      .|+..... . ...+-.....+++|+|.++ +|+++|+.+..+.      +...+...+....++.+|.++|...
T Consensus        76 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~~------~~~~~~~~~gw~~~l~~Lk~~le~~  143 (146)
T 2leq_A           76 QYSHFSPLTGKPDLPENYHVVTITLTALKK-GVEVELTQDNNET------EKEQKHSEDNWNTMLEGLKKFLENK  143 (146)
T ss_dssp             EEECBCGGGCCCSCGGGSCEEEEEEEECSS-CEEEEEEEEEESS------HHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EEEEccCccCCCCCCCCceEEEEEEEEcCC-CeEEEEEEecCCc------hhhHhhHHhhHHHHHHHHHHHHhcc
Confidence            78764321 0 0012235678899999865 6999999765432      1223456677888999999988654

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=99.05  E-value=4.4e-08  Score=73.24  Aligned_cols=141  Identities=11%  Similarity=0.005  Sum_probs=89.8

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCcE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      .+++.++.|++|+++||+++ .|+.. +++|++..--.+...+++-.+|..-.+.+. ++ +..-...-++..+++..+ 
T Consensus        22 ~~i~~~r~i~Ap~e~Vw~al-tdpe~-~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~~~v~e~~p~~r-   97 (178)
T 1xuv_A           22 QEIIITREFDAPRELVFKAF-TDPDL-YTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPE-GNEYAFHGVNHDVTEPER-   97 (178)
T ss_dssp             SEEEEEEEESSCHHHHHHHH-HCHHH-HTTTCSSTTCEEEEEEECCSTTCEEEEEEECTT-SCEEEEEEEEEEEETTTE-
T ss_pred             cEEEEEEEECCCHHHHHHHh-CCHHH-HHhCCCCCCccceEEEEecccCCEEEEEEECCC-CCEEEEEEEEEEEeCCCE-
Confidence            46888899999999999997 79995 889865311122223344444544444443 22 222346778888887654 


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH-----HHHHHHHHHHHHHHHHhhC
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN-----IKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~k~ie~~l~~~  156 (164)
                      +.|+...++.. ..-.....++.|+|.++++|+++++.+|.       +++....     +.+....++.+|+++|.+.
T Consensus        98 l~~~~~~~~~~-~~~~~~~v~~~l~~~~~ggT~lt~~~~~~-------~~~~~~~~~~~~~~~Gw~~~L~~Lk~~le~~  168 (178)
T 1xuv_A           98 IISTFEFEGLP-EKGHVILDTARFEALPGDRTKLTSHSVFQ-------TIEDRDGMLQSGMEEGINDSYERLDELLEKM  168 (178)
T ss_dssp             EEEEEEETTSS-SSCCCEEEEEEEEEETTTEEEEEEEEECS-------SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCC-CCCCcEEEEEEEEEcCCCCEEEEEEEEeC-------CHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence            77876543311 11225678899999876689999998863       1222221     2367778888888887653

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=99.03  E-value=1.6e-09  Score=78.04  Aligned_cols=128  Identities=12%  Similarity=0.070  Sum_probs=86.5

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      .+++.++.|++|+++||+++ .|+.. +++|.|+    +   +++-.+|....+.+. + +.   +.-++..+++.. ++
T Consensus         8 ~~i~~~~~i~ap~e~Vw~~l-td~~~-~~~W~~~----~---~~~~~~G~~~~~~~~-~-g~---~~~~v~e~~p~~-~l   72 (143)
T 1xn6_A            8 NDIKQTIVFNASIQKVWSVV-STAEG-IASWFMP----N---DFVLEVGHEFHVQSP-F-GP---SPCKVLEIDEPN-HL   72 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHTT-SCSHH-HHTTSCC----B---CCCCCTTCEECBCCT-T-CC---CCEEEEEEETTT-EE
T ss_pred             CEEEEEEEEcCCHHHHHHHH-hCHhH-HHHhcCC----C---CcCcCCCCEEEEEEc-C-CC---ceEEEEEEeCCC-EE
Confidence            45889999999999999997 79995 8999986    2   233345555444443 2 22   567888888854 58


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC-CCCCC-----hHHHHHHHHHHHHHH-HHHHHHHh
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG-DSLLS-----EEDVRNIKQGILTMV-KAAERFLL  154 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~-k~ie~~l~  154 (164)
                      .|+...+        ....+++|+|.++|+|+++++.+..+.. +..+.     ++..+...+....++ ..|.++|.
T Consensus        73 ~~~~~~~--------~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~~L~~~le  142 (143)
T 1xn6_A           73 SFSWDTD--------GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVE  142 (143)
T ss_dssp             EEEETTT--------TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             EEEEeCC--------CEEEEEEEEECCCCcEEEEEEEEccCccccccccccchhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence            8877322        4567889999877689999988754432 11111     122344566777777 88877763

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.98  E-value=6.1e-08  Score=69.69  Aligned_cols=133  Identities=14%  Similarity=0.120  Sum_probs=88.3

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccc-cCcceeeEEEecCCCCcccEEEEEeecCCcc-eeEEEEEEEEeeCCCcE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKA-LPQVISSIDLLEGDGGVGTIKKFNFTEAVKE-FRYVKDRVEIMDNENHV   82 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~-~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~-~~~~kErl~~~D~~~~~   82 (164)
                      +++.++.|++|+++||+++ .|+.. +++| .+..--.+...+++-.+|..-.+.+....+. ...+.-++..+++.++ 
T Consensus         2 ~i~~~~~i~ap~e~Vw~al-td~~~-~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~v~~~~p~~~-   78 (142)
T 2lcg_A            2 NITVETTVAAPVGKVWRAY-TTPED-IKQWNAASDDWHTTAATVDLREGGAFSSRMEAKDGSMGFDFAGTYTKVVENKR-   78 (142)
T ss_dssp             EEEEEEEESSCHHHHHHHT-TCHHH-HHHHCCSSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEETTTE-
T ss_pred             eEEEEEEeCCCHHHHHHHh-CCHHH-HhcCCCCCCCccceeeEEccccCCEEEEEEEcCCCCceeeeEEEEEEEcCCCE-
Confidence            5788999999999999997 79995 8898 6532112222344544565555555421121 2346778888887554 


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCch
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ  158 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~  158 (164)
                      +.|+.   +    +   ...++.|+|.++ +|++.++.++.  .     ++..+.+.+....++.+|+++|....+
T Consensus        79 l~~~~---~----g---~~~~~~l~~~~~-gT~l~~~~~~~--~-----~~~~~~~~~Gw~~~L~~L~~~le~~~~  136 (142)
T 2lcg_A           79 IEYAF---G----D---RTAKVEFLEAPQ-GVTVRVSFVAE--T-----EYPVEQQQQGWQAILNNFKRHVESHLE  136 (142)
T ss_dssp             EEEEE---T----T---EEEEEEEEEETT-EEEEEEEEECC--S-----SSCHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEc---C----C---CEEEEEEEEcCC-CEEEEEEEecC--C-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78886   1    2   667899999874 79999987662  1     112334467788889999998876554

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.90  E-value=2.6e-07  Score=67.18  Aligned_cols=140  Identities=9%  Similarity=-0.102  Sum_probs=84.6

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEE--EecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSID--LLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e--~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      ++..++.|++|+++||+++ .|+.. +.+|.+..--.+.  ..+.+-.+|..-.+.+....|..-...-++..+++.++ 
T Consensus         3 ~i~~~r~i~Ap~e~Vw~al-tdp~~-~~~W~~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~~-   79 (152)
T 3eli_A            3 DLRLEREFAVAPEALFAWV-SDGAK-LLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQS-   79 (152)
T ss_dssp             EEEEEEEESSCHHHHHHHT-TCHHH-HHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTTE-
T ss_pred             eEEEEEEECCCHHHHHHHH-cCHHH-HhhccCCCCcccccceeEEcccCCcEEEEEEECCCCCEEEEEEEEEEEcCCCE-
Confidence            5677889999999999997 79995 8888753111111  12344345544444443211222246778888887654 


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~  154 (164)
                      +.|+....+....+-.....++.|+|.++ +|+++++-.-      .++++..+...+.-..++..|++||.
T Consensus        80 l~~~~~~~~~~~~~~~~~~v~~~l~~~~~-gT~l~l~~~~------~~~~~~~~~~~~GW~~~L~~L~~~l~  144 (152)
T 3eli_A           80 VGFTWGWHDDDDRRGAESHVMFIVEPCAK-GARLILDHRE------LGDDEMSLRHEEGWTSSLRKLAAELA  144 (152)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEECCBC---CEEEEEEEES------CSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEcc------CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77776433221112245677888888875 5988876441      12233345567788888999988875

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.88  E-value=7.4e-07  Score=65.91  Aligned_cols=142  Identities=13%  Similarity=0.117  Sum_probs=89.9

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCc-ceeeEEEecCCCCcccEEEEEeec-CCcceeEEEEEEEEeeCCCc
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQ-VISSIDLLEGDGGVGTIKKFNFTE-AVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~-~v~s~e~~eGdg~~G~vR~~~~~~-g~~~~~~~kErl~~~D~~~~   81 (164)
                      .+++.++.|++|+++||+++ .|+.. +++|.+. -+ .+...+++-.+|..-.+.+.. + +......-++..+++.++
T Consensus        12 ~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~-g~~~~~~~~v~e~~p~~r   87 (172)
T 2ldk_A           12 LSFSIVAEFDADVKRVWAIW-EDPRQ-LERWWGPPTW-PATFETHEFTVGGKAAYYMTGPD-GTKARGWWQFTTIEAPDH   87 (172)
T ss_dssp             TEEEEEEEESSCHHHHHHHH-HCHHH-HHTTSSCTTS-CEEEEEECCSTTCEEEEEEECTT-SCEEEEEEEEEEECSSSE
T ss_pred             ceEEEEEEeCCCHHHHHHHh-CCHHH-HHhccCCCCc-ccceEEEeecCCCEEEEEEECCC-CCEEeeEEEEEEEcCCCE
Confidence            46888999999999999997 79985 7888642 12 122223454455443444432 2 222246778888887654


Q ss_pred             EEEEEEEeccccccc---eeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-----HHHHHHHHHHHHHHHHH
Q 047051           82 VFRYSIVEGGILGFK---VNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-----NIKQGILTMVKAAERFL  153 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~---~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~k~ie~~l  153 (164)
                       +.|+....+..+.+   ......++.|+|.++ +|+++++..+.+       ++...     .+.+....++.+|+++|
T Consensus        88 -l~~~~~~~~~~g~p~~~~~~~~v~~~l~~~~~-gT~lt~~~~~~~-------~~~~~~~~~~~~~~Gw~~~L~~L~~~l  158 (172)
T 2ldk_A           88 -LEFDDGFADEHGAPVDELGVTHATVKLEPLEN-RTRMTIISTFES-------EEQMQKMAEMGMEEGMREAIEQIDAVL  158 (172)
T ss_dssp             -EEEEEEEBCSSCCBCTTTCEEEEEEEEEEETT-EEEEEEEEEESC-------HHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             -EEEEEeecCCCCCccCCCccEEEEEEEEEcCC-CEEEEEEEEcCC-------HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence             77876543211011   235678899999864 799999988632       22221     13567788899999988


Q ss_pred             hhCch
Q 047051          154 LANPQ  158 (164)
Q Consensus       154 ~~~~~  158 (164)
                      .+.+.
T Consensus       159 e~~~~  163 (172)
T 2ldk_A          159 SEPAN  163 (172)
T ss_dssp             TCCSS
T ss_pred             HHhHH
Confidence            76543

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.87  E-value=2.4e-07  Score=68.19  Aligned_cols=142  Identities=13%  Similarity=0.100  Sum_probs=88.8

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcc--eeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCC
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQV--ISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~--v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~   79 (164)
                      -.++..+..|++|+++||+++ .|+.. +++|.+..  +. +...+++-.+|..-.+.+. ++ |..-.+.-++..+++.
T Consensus         7 ~~~i~~~r~i~Ap~e~Vw~al-tdp~~-~~~W~~~~~~~~-~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~g~v~e~~p~   82 (161)
T 3rd6_A            7 HSTFTIERTYPQSPDRVFHAF-ADKAT-VRRWRVDGDGFT-VAEFSFDFRVGGGEVSRFSYGG-GPEVRLDAQFQDIVPD   82 (161)
T ss_dssp             EEEEEEEEEESSCHHHHHHHH-HCHHH-HHHHTCCCCC----CEEEECCSTTCEEEEEECSTT-SCCEEEEEEEEEEETT
T ss_pred             CceEEEEEEECCCHHHHHHHh-cCHHH-HhhccCCCCCce-eeEEEEccCcCCEEEEEEECCC-CCEEEEEEEEEEEcCC
Confidence            467888999999999999997 79995 88888532  11 1112344344444444443 22 2222466778888876


Q ss_pred             CcEEEEEEEec-cccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC
Q 047051           80 NHVFRYSIVEG-GILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        80 ~~~~~Y~i~eg-~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      .+ +.|+..-. +.  .+......++.|+|.++ +|+++++.+....++.    +......+....++..|++||...
T Consensus        83 ~r-l~~~~~~~~~~--~~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~----~~~~~~~~GW~~~L~~L~~~le~~  152 (161)
T 3rd6_A           83 QR-IVFSYRMAIGP--QPMSASLTTVELTPSGD-GTRLTYTEQGAFFDGV----DSAKGREEGTRGLLEALAAELQKW  152 (161)
T ss_dssp             TE-EEEEEEEEETT--EEEEEEEEEEEEEEETT-EEEEEEEEEEEEETTC----CCHHHHHHHHHHHHHHHHHHC---
T ss_pred             CE-EEEEEEecCCC--CCCCceEEEEEEEECCC-CEEEEEEEEecCcchh----hhHHHHHHHHHHHHHHHHHHHhhc
Confidence            55 66775321 11  13445678899999875 6999999987543311    112344678888899999887653

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.83  E-value=2.4e-07  Score=66.99  Aligned_cols=132  Identities=11%  Similarity=0.106  Sum_probs=86.1

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccc-cCc-ceeeEEEecCCCCcccEEEEEee-cCCcc-eeEEEEEEEEeeCCC
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKA-LPQ-VISSIDLLEGDGGVGTIKKFNFT-EAVKE-FRYVKDRVEIMDNEN   80 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~-~P~-~v~s~e~~eGdg~~G~vR~~~~~-~g~~~-~~~~kErl~~~D~~~   80 (164)
                      +++.++.|++|+++||+++ .|+.. +++| .+. -+ .+...+++-.+|..-.+.+. ++ |. .-.+.-++..+++.+
T Consensus         3 ~i~~~~~i~Ap~e~Vw~al-tdpe~-~~~W~~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~~g~v~e~~p~~   78 (144)
T 2l8o_A            3 KITVEVTVYAAIEKVWKYW-NEPAH-IMKWCQASPEW-HVPAAQNDLKAGGTFTTTMAAKD-GSMSFDFGGVYDQVKTND   78 (144)
T ss_dssp             SEEEEEEECSCHHHHHHHH-HCHHH-HHHHSTTCTTC-EEEEEECCCSTTCEEEEEEECTT-SSCEEEEEEEEEEEETTT
T ss_pred             EEEEEEEECCCHHHHHHHH-CCHHH-HhhccCCCCCc-ccceeEEccCCCCEEEEEEECCC-CCceeeeeEEEEEEeCCC
Confidence            4678889999999999997 79995 8898 653 22 23333455444444344443 22 22 123666788888766


Q ss_pred             cEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCch
Q 047051           81 HVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ  158 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~  158 (164)
                      + +.|+.. |        ....++.|++.+ ++|++.++.++ +      +++..+...+....++.+|+++|....+
T Consensus        79 ~-l~~~~~-g--------~~~v~~~l~~~~-~gT~l~~~~~~-~------~~~~~~~~~~Gw~~~L~~L~~~le~~~~  138 (144)
T 2l8o_A           79 L-IEYTIG-D--------GRKVRIVFTHTG-DTTNIVESFDP-E------ETNPRELQQSGWQAILNSFKSYTENNLE  138 (144)
T ss_dssp             E-EEEEET-T--------CCEEEEEEEECS-SSEEEEEEECC-C------SSSCHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred             E-EEEEeC-C--------CeEEEEEEEEcC-CCEEEEEEEeC-C------CHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            5 788852 2        256789999986 47998888665 1      1122334567788889999998876443

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.82  E-value=5.5e-07  Score=67.06  Aligned_cols=139  Identities=11%  Similarity=-0.005  Sum_probs=87.6

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCc-ceeeEEEecCCCCcccEEEEEeec-CCcceeEEEEEEEEeeCCCc
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQ-VISSIDLLEGDGGVGTIKKFNFTE-AVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~-~v~s~e~~eGdg~~G~vR~~~~~~-g~~~~~~~kErl~~~D~~~~   81 (164)
                      .++..++.|++|+++||+++ .|+.. +++|++. -+ .+...+++-.+|..-.+.+.. + +..-...-++..+++.++
T Consensus        10 ~~i~~~r~i~Ap~e~Vw~al-tdp~~-~~~W~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~~~v~e~~p~~r   85 (178)
T 1xfs_A           10 LDLMLKRELAVPVNLVWRGL-TEPEL-LKKWFVPKPW-SISDCRVDLRPGGEFYTVMQDPE-GNKFPNSGCFLEVTDEKR   85 (178)
T ss_dssp             TEEEEEEEESSCHHHHHHHH-HCHHH-HTTTSSCTTC-EEEEEEECCSTTCEEEEEEECTT-CCEEEEEEEEEEEETTTE
T ss_pred             ceEEEEEEecCCHHHHHHHh-CCHHH-HhhCCCCCCe-eeeEEEEeeECCcEEEEEEECCC-CCEEEEEEEEEEEeCCCE
Confidence            46788899999999999997 79995 8888653 12 122234454555555555442 2 222246678888887654


Q ss_pred             EEEEEEEecccccccee------------EEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH-----HHHHHHH
Q 047051           82 VFRYSIVEGGILGFKVN------------SYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN-----IKQGILT  144 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~------------~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~-----~~~~~~~  144 (164)
                       +.|+..-++. ..+..            ....++.|+|.++ +|+++++.+|.       +++....     +.+....
T Consensus        86 -l~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~-------~~~~~~~~~~~~~~~Gw~~  155 (178)
T 1xfs_A           86 -LIWTSALVKN-YRPAVPATTSDKECAHIVMTAVIELQPTSS-GTRYTACAMHN-------TPGQRKLHEEMGFHEGWGT  155 (178)
T ss_dssp             -EEEESSEEGG-GEECCC-----------CCEEEEEEEECSS-SEEEEEEEECS-------SHHHHHHHHTTTHHHHHHH
T ss_pred             -EEEEEEEcCC-CCccccccccccccccccEEEEEEEEECCC-CEEEEEEEEcC-------CHHHHHHHHhhhHHHHHHH
Confidence             7777532210 00111            4678899999865 79999998852       1222221     2567778


Q ss_pred             HHHHHHHHHhhC
Q 047051          145 MVKAAERFLLAN  156 (164)
Q Consensus       145 ~~k~ie~~l~~~  156 (164)
                      ++.+|+++|.+.
T Consensus       156 ~l~~L~~~le~~  167 (178)
T 1xfs_A          156 TITQLEELLKQE  167 (178)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            888888887553

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.82  E-value=3.2e-08  Score=72.60  Aligned_cols=135  Identities=10%  Similarity=0.073  Sum_probs=87.7

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      ..+++.++.|++|+++||+++ .|+.. +++|+|. ..+.+.     .+|..-.+.+. | +.  .+..++..+++.. +
T Consensus         8 ~~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~-~~~~~~-----~~Gg~~~~~~~-g-~~--~~~~~v~e~~p~~-~   74 (160)
T 2lak_A            8 SFVVRREAHLAAPPAAVFALM-TDPEK-ILRWMGT-EAEVEP-----EPGGLYLVNVT-G-AR--FARGSFREVVPVH-R   74 (160)
T ss_dssp             CCEEEEEEEESSCHHHHHHHH-HCHHH-HHHTSCS-SEEESC-----STTCCEEECSS-T-TC--CSSCCEEEEETTT-E
T ss_pred             CceEEEEEEeCCCHHHHHHHh-cChHH-HhhhCCC-cceeec-----cCCCEEEEEEe-C-Cc--eEEEEEEEEcCCC-E
Confidence            357899999999999999997 79995 8999986 323222     23333334443 3 21  3455677788744 4


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCc
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANP  157 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~  157 (164)
                      +.|+...++....+-.....++.|+|.++ +|.+.|+.+-.      +.++......+....++.+|.++|.+.+
T Consensus        75 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~------~~~~~~~~~~~gw~~~L~~Lk~~le~~~  142 (160)
T 2lak_A           75 LAYSFGWDGSEVVPPGSSLVEIDLIEQGG-GTLLRLTHSGL------PSAEQCAGHEEGWAHYLGRLTEVAAGRD  142 (160)
T ss_dssp             EEECCCCCSSSCCCTTSCEEEEEEEECSS-SEEEEEEEECC------CSHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             EEEEEEecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEeCC------CCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            77776433210012235778999999865 79999987621      1223344556678889999999887643

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.80  E-value=2e-07  Score=68.66  Aligned_cols=139  Identities=12%  Similarity=0.073  Sum_probs=88.7

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcc----eeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEee
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQV----ISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMD   77 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~----v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D   77 (164)
                      -.++..+..|++|+++||+++ .|+.. +++|.+..    +..++   +|-.+|..-.+.+. ++ |..-.+.-++..++
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~al-tdp~~-~~~W~~~~~g~~~~~~~---~d~~~Gg~~~~~~~~~~-G~~~~~~g~v~e~~   81 (162)
T 3q64_A            8 HSTFIIERLYPAPPSKVFFAL-GNADA-KRRWFTDPDNPMPGRFE---MDFRVGGKEVNAGGPKD-GPIHVYTATYQDIV   81 (162)
T ss_dssp             EEEEEEEEEESSCHHHHHHHH-HCHHH-HHHHSSCTTSCCGGGCE---ECCSTTCEEEEEECCTT-SCCEEEEEEEEEEE
T ss_pred             cceEEEEEEeCCCHHHHHHHH-CCHHH-HhhcCCCCCCccceEEE---ECCccCCEEEEEEECCC-CCEEEEEEEEEEEc
Confidence            356888999999999999997 79995 88988542    11122   23334443344443 22 22234677788888


Q ss_pred             CCCcEEEEEEEec-cccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051           78 NENHVFRYSIVEG-GILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        78 ~~~~~~~Y~i~eg-~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  155 (164)
                      +..+ +.|+..-. +.  .+......++.|+|.++ +|+++++....+.++.    +......+.-..++..|++||..
T Consensus        82 p~~r-l~~~~~~~~~~--~~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~----~~~~~~~~GW~~~L~~L~~~le~  152 (162)
T 3q64_A           82 PDQR-IVYSYDMLFGE--TRISVSLATIQLFAEGE-GTRLVLTEQGAFLDGH----DTPSTREHGTGVLLDLLDAFLDK  152 (162)
T ss_dssp             TTTE-EEEEEEEEETT--EEEEEEEEEEEEEEETT-EEEEEEEEEEEEETTS----SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCE-EEEEEEecCCC--CCCCceEEEEEEEEcCC-CEEEEEEEEecCccch----hHHHHHHHHHHHHHHHHHHHHhh
Confidence            7655 66765421 11  13345678899999875 6999999887543311    11233467888888888888765

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.80  E-value=9.1e-07  Score=65.35  Aligned_cols=142  Identities=12%  Similarity=0.070  Sum_probs=87.4

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCcE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      .+++.++.|++|+++||+++ .|+.. +.+|.+..--.+...+++-.+|..-.+.+. ++ |..-.+.-++..+++..+ 
T Consensus        13 ~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~g~v~e~~p~~r-   88 (164)
T 3pu2_A           13 TRLEFRRHFAATPEQLWAAL-TSPAL-LPAWLFARGWPMTECVFEPHKGGLIRQVWTGPE-GRTRGLTGRVILAEPPHR-   88 (164)
T ss_dssp             TEEEEEEEESSCHHHHHHHH-HCTTT-GGGTSCBTTBCEEEEEECCSTTCEEEEEEECGG-GCEEEEEEEEEEEETTTE-
T ss_pred             ceEEEEEEECCCHHHHHHHh-cCHHH-HhhEeCCCCeeeEEEEEeccCCCEEEEEEECCC-CCEEEEEEEEEEEcCCCE-
Confidence            46888999999999999997 79995 888876321122223445444444334432 22 222246777888887655 


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH--HHHHHHHHHHHHHHHHHHhhC
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV--RNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      +.|+..-.+.. .+ .....++.|+|.++ +|+++++..|...    ...+..  ..+.+....++.+|+++|.+-
T Consensus        89 l~~t~~~~~~~-~~-~~s~vt~~l~~~~~-gT~l~l~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~l~~~  157 (164)
T 3pu2_A           89 LIHSELYDEDW-TG-GETLVTLQLLPVEG-GTELAMAVDYATP----EARDAVAASAMATEMEEAYRHLDVMLAAL  157 (164)
T ss_dssp             EEEEEBCC----CC-SCEEEEEEEEEETT-EEEEEEEEECSST----THHHHHHTSTHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEeccCCC-CC-CCEEEEEEEEEcCC-CEEEEEEEEeCCH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            77776321110 12 13678899999875 6999998885321    011111  124567788889999888764

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.79  E-value=7.8e-07  Score=65.93  Aligned_cols=141  Identities=13%  Similarity=0.034  Sum_probs=89.3

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcc----eeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEee
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQV----ISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMD   77 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~----v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D   77 (164)
                      -.++..+..|++|+++||+++ .|+.. +.+|.+..    +..++   +|-.+|..-.+.+. ++ |..-.+.-++..++
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~a~-Tdpe~-l~~W~~~~~~~~~~~~~---~d~~~GG~~~~~~~~~~-G~~~~~~g~v~ev~   81 (166)
T 3put_A            8 HTTFVIERRLTAPVARVFRAW-STPES-KRQWFACHGEWVPLEYA---LDFRPGGTERNYTADTD-GLLHAYDARYIDIV   81 (166)
T ss_dssp             EEEEEEEEEESSCHHHHHHHH-HCHHH-HHHHHTCC---CCSEEE---ECCSTTCEEEEEEECTT-SCEEEEEEEEEEEE
T ss_pred             cceEEEEEEECCCHHHHHHHh-CCHHH-HHhcCCCCCCceeeEEE---eCcccCCEEEEEEECCC-CCEEEEEEEEEEEc
Confidence            357888999999999999997 79994 88887421    12233   34333333333332 22 22223677888888


Q ss_pred             CCCcEEEEEEEec-cccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC
Q 047051           78 NENHVFRYSIVEG-GILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        78 ~~~~~~~Y~i~eg-~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      +..+ +.|+..-. +.  .+......++.|++.+ ++|+++++....+..+...    .....+....++..|++||...
T Consensus        82 p~~r-lv~t~~~~~~~--~~~~~s~vt~~l~~~~-~gT~ltl~~~~~~~~~~~~----~~~~~~GW~~~L~~L~~~le~~  153 (166)
T 3put_A           82 PDTR-IIYAYEMKLGQ--TRISASLVTVAFDVEP-SGTRMVFTEQVVFLDGYGD----NGARLQGTEIGLDNLELFLVRE  153 (166)
T ss_dssp             TTTE-EEEEEEEEETT--EEEEEEEEEEEEEECS-SSEEEEEEEEEEEETTCCC----TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcE-EEEEEEecCCC--CCCCceEEEEEEEECC-CCEEEEEEEEecCccchhh----HHHHHHHHHHHHHHHHHHHhcC
Confidence            7655 66765321 11  1344567889999986 5799999988764432111    1123677888899999988654


Q ss_pred             c
Q 047051          157 P  157 (164)
Q Consensus       157 ~  157 (164)
                      .
T Consensus       154 ~  154 (166)
T 3put_A          154 T  154 (166)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.77  E-value=1.1e-07  Score=68.71  Aligned_cols=128  Identities=10%  Similarity=0.115  Sum_probs=82.1

Q ss_pred             cEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051            3 LGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         3 ~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      ..+++.++.|++|+++||+++ .|+.. +++|+|..       +++-.+|..-.+.. ++ +   .+.-++..+++.. +
T Consensus         4 ~~~i~~~~~i~Ap~e~Vw~al-td~~~-~~~W~~~~-------~~~~~~Gg~~~~~~-~~-g---~~~~~v~e~~p~~-~   68 (146)
T 1xn5_A            4 LPDIKKEVRFNAPIEKVWEAV-STSEG-LAFWFMEN-------DLKAETGHHFHLQS-PF-G---PSPCQVTDVERPI-K   68 (146)
T ss_dssp             CCCEEEEEEESSCHHHHHHHT-TSHHH-HHTTSCCB-------CCCSCTTCEEEEEC-SS-C---EEEEEEEEEETTT-E
T ss_pred             CcEEEEEEEEcCCHHHHHHHH-hChhH-HHHhcCCC-------CCCccCCCEEEEEe-cC-C---ceEEEEEEEeCCc-E
Confidence            356889999999999999997 79995 89998851       23334555544555 32 2   3677888898765 4


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCC------CCChHHHHHHHHHHHHHH-HHHHHHHh
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS------LLSEEDVRNIKQGILTMV-KAAERFLL  154 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-k~ie~~l~  154 (164)
                      +.|+...        .....+++|+|.++ +|++.++.+-.+..+.      ...........+.-..++ ..|+++|.
T Consensus        69 l~~~~~~--------~~~~~~~~l~~~~~-gT~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GW~~~l~~~L~~~l~  138 (146)
T 1xn5_A           69 LSFTWDT--------DGWSVTFHLKEEEN-GTIFTIVHSGWKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIVE  138 (146)
T ss_dssp             EEEEETT--------TTEEEEEEEEECSS-SEEEEEEEECCCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHHC
T ss_pred             EEEEEeC--------CCEEEEEEEEEcCC-CEEEEEEEEEecCCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            7787742        12467889999865 6999888764332211      001122233455566666 66666653

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.75  E-value=5.2e-07  Score=65.73  Aligned_cols=136  Identities=15%  Similarity=0.095  Sum_probs=85.6

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            2 VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ...+++.++.|++|+++||+++ .|+.. +++|.|.    +   +++-.+|..-.+. .+. +  ..+.-++..+++..+
T Consensus         7 ~~~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~----~---~~~~~~Gg~~~~~-~~~-g--~~~~g~v~e~~p~~~   73 (151)
T 3q63_A            7 ENRTVVVERQISHPPEKLWRAL-TQPHL-IEEWLMK----N---DFKPAVGHRFNIS-ADW-G--GVLDCEVLAVEPNKT   73 (151)
T ss_dssp             --CEEEEEEEESSCHHHHHHHH-HCHHH-HHHHSCE----E---CCCSSTTCEEEEE-CTT-S--CEEEEEEEEEETTTE
T ss_pred             CCCeEEEEEEeCCCHHHHHHHH-cCHHH-HHhhcCc----C---CCccCCCCEEEEE-CCC-C--CEEEEEEEEEeCCCE
Confidence            3467889999999999999997 79994 8999973    2   3343445443343 222 2  246777888887665


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  156 (164)
                       +.|+...++.-..+-..-..++.|+|.++ +|+++++....+..    ..+......+.-..++..|++||...
T Consensus        74 -l~~~~~~~~~~~~~~~~s~v~~~l~~~~~-gT~l~l~~~g~~~~----~~~~~~~~~~GW~~~L~~L~~~le~~  142 (151)
T 3q63_A           74 -LSYTWNLAHQDPAFDLRSVVTFTLTPTPT-GTHLRMEQSGFRPD----QRRAYGGAKMGWPQFFEKLEQLLDRT  142 (151)
T ss_dssp             -EEEECBBCCSSTTTCBCCEEEEEEEECSS-SEEEEEEEECCCTT----CHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             -EEEEEecCCCCCCCCCCeEEEEEEEEcCC-CEEEEEEEeCCCcc----hHHHHHhhhhCHHHHHHHHHHHHhcc
Confidence             77776433210011223467788999875 69998887633221    12223345677788889999887654

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.74  E-value=1e-06  Score=63.64  Aligned_cols=131  Identities=14%  Similarity=0.112  Sum_probs=83.7

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccc-cCc-ceeeEEEecCCCCcccEEEEEee-cCCcc-eeEEEEEEEEeeCCC
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKA-LPQ-VISSIDLLEGDGGVGTIKKFNFT-EAVKE-FRYVKDRVEIMDNEN   80 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~-~P~-~v~s~e~~eGdg~~G~vR~~~~~-~g~~~-~~~~kErl~~~D~~~   80 (164)
                      +++.++.|++|+++||+++ .|+.. +++| ++. -+ .+...+++-.+|..-.+.+. ++ |. .-.+.-++..+++..
T Consensus         2 ~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~~g~v~e~~p~~   77 (144)
T 2lgh_A            2 KISIEAHIEQEIEAVWWAW-NDPDC-IARWNAASSDW-HTTGSRVDLVVGGRFCHHMAAKD-GSAGFDFTGTFTRVEAPT   77 (144)
T ss_dssp             EEEEEEEESSCHHHHHHHH-HCHHH-HTTSSSCSTTE-EEEEEEECCSTTCEEEEEEEETT-SSCEEEEEEEEEEEETTT
T ss_pred             EEEEEEEeCCCHHHHHHHh-CCHHH-HhccCCCCCCc-ccceEEECCCCCCEEEEEEECCC-CCceEEeEEEEEEEeCCC
Confidence            5778899999999999997 79995 8898 653 12 12222334334433333333 22 22 123566788888765


Q ss_pred             cEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCc
Q 047051           81 HVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANP  157 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~  157 (164)
                      + +.|+.. |        ....++.|+|.+ ++|++..+.++.  +     ++..+...+....++.+|+++|....
T Consensus        78 ~-l~~~~~-~--------~~~~~~~l~~~~-~gT~l~~~~~~~--~-----~~~~~~~~~Gw~~~L~~L~~~le~~~  136 (144)
T 2lgh_A           78 R-LSFVMD-D--------GREVDVQFASEP-GGTWVQETFDAE--T-----SHTPAQQQAGWQGILDNFKRYVEAAG  136 (144)
T ss_dssp             E-EEEEET-T--------CCEEEEEEEEET-TEEEEEEEEECC--T-----TSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             E-EEEEec-C--------CcEEEEEEEEcC-CCEEEEEEEECC--C-----HHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            4 888852 2        246788999986 479888887662  1     11133346678888899998886543

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.74  E-value=4.3e-07  Score=64.62  Aligned_cols=127  Identities=11%  Similarity=0.144  Sum_probs=85.1

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +++.++.|++|+++||+++ .|+.. +++|.+.   .+   +++-.+|..-.+.+.+. +  ....-++..+++..+ +.
T Consensus         2 ~i~~~~~i~ap~e~Vw~al-td~~~-~~~W~~~---~~---~~~~~~Gg~~~~~~~~~-~--~~~~~~v~~~~p~~~-l~   69 (135)
T 3q6a_A            2 DIITKMQVDVPRETVFEAF-VDPEK-IGGFWFS---SS---SERWEQGKTITLRYEEY-D--AELNINIERVEDNQL-IA   69 (135)
T ss_dssp             CEEEEEEESSCHHHHHHHH-HCTTT-GGGTSSS---EE---SSCCCTTCEEEEECGGG-T--C-CEEEEEEEETTTE-EE
T ss_pred             eEEEEEEeCCCHHHHHHHH-cCHHH-hcccCCC---CC---cccccCCCEEEEEEcCc-C--ceEEEEEEEEcCCCE-EE
Confidence            4678999999999999997 79995 8999764   22   45545565555555432 1  123446777777654 77


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCch
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ  158 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~  158 (164)
                      |+..+      +    ..++.++|.+ ++|.++++....+..    ..+......+....++..+++||.....
T Consensus        70 ~~~~~------g----~~~~~l~~~~-~gT~l~~~~~~~~~~----~~~~~~~~~~GW~~~l~~L~~~le~g~~  128 (135)
T 3q6a_A           70 FTWGA------H----PITIQFEESE-AGTVVTTTEKDFDTQ----DVKQLLGQKEGWVYMLSCLKVYLEHGVT  128 (135)
T ss_dssp             EEETT------E----EEEEEEEEET-TEEEEEEEECCCCSS----CHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEcC------C----eEEEEEEECC-CCEEEEEEEcCCCcc----hHHHHhhchhCHHHHHHHHHHHHhcCcc
Confidence            87642      1    6789999975 579998886532221    1222334567888899999999876543

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.73  E-value=1.5e-06  Score=64.66  Aligned_cols=139  Identities=16%  Similarity=0.151  Sum_probs=85.8

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccC-cceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCc
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALP-QVISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P-~~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~   81 (164)
                      .++..+..|++|+++||+++ .|+.. +.+|++ .-. .+...+.|-.+|..-.+.+. ++ |..-...-++..+++..+
T Consensus        13 ~~i~~~r~i~Ap~e~Vw~a~-Tdpe~-l~~W~~p~~~-~~~~~~~d~r~GG~~~~~~~~~~-G~~~~~~g~~~ev~p~~r   88 (168)
T 3uid_A           13 LTLTITAEFAAPVTRIWQIY-ADPRQ-LEKVWGPPSH-PATVVDHDLRPGGRVTYFMTGPD-GEKYAGYWEITAVDEPHS   88 (168)
T ss_dssp             TEEEEEEEESSCHHHHHHHH-HSHHH-HHHHHCCTTS-CCEEEEECCSTTCEEEEEEECTT-SCEEEEEEEEEEEETTTE
T ss_pred             CEEEEEEEEcCCHHHHHHHh-CCHHH-HhhEeCCCCe-eeeEEEEcccCCcEEEEEEECCC-CCEEeeEEEEEEEeCCcE
Confidence            35788899999999999997 79984 777753 322 12222344334333333332 22 222246778888888655


Q ss_pred             EEEEEEEec----cccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-----HHHHHHHHHHHHHHHH
Q 047051           82 VFRYSIVEG----GILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-----NIKQGILTMVKAAERF  152 (164)
Q Consensus        82 ~~~Y~i~eg----~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~k~ie~~  152 (164)
                       +.|+-.-.    .+. ........++.|++.+ ++|+++++..|.       +++..+     .+.+....++..|++|
T Consensus        89 -lv~t~~~~~~~g~p~-~~~~~s~vt~~l~~~~-~gT~lt~~~~~~-------~~~~~~~~~~~g~~~GW~~~L~~L~~~  158 (168)
T 3uid_A           89 -FSFLDGFADEDFNPN-TDLPVSTNVYTFTEHD-GGTRATYVGTYA-------SAEALQQVLDMGVIEGASSAINQIDAL  158 (168)
T ss_dssp             -EEEEEEEECTTSCBC-SSCCCEEEEEEEEEET-TEEEEEEEEECS-------CHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             -EEEEEeeccCCCCcC-CCCCcEEEEEEEEECC-CCEEEEEEEecC-------CHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence             66775322    111 1112467889999986 579999986542       222222     1467788899999999


Q ss_pred             HhhC
Q 047051          153 LLAN  156 (164)
Q Consensus       153 l~~~  156 (164)
                      |.+.
T Consensus       159 l~~~  162 (168)
T 3uid_A          159 LTAT  162 (168)
T ss_dssp             TCSC
T ss_pred             HHhh
Confidence            8764

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.71  E-value=2.6e-06  Score=63.43  Aligned_cols=139  Identities=12%  Similarity=0.078  Sum_probs=85.5

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCc-ceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCc
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQ-VISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~-~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~   81 (164)
                      .+++.++.|++|+++||+++ .|+.. +++|++. -+ .+...++|-.+|..-.+.+. ++ |..-...-++..+++.++
T Consensus        16 ~~i~~~~~i~Ap~e~Vw~a~-tdpe~-~~~W~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~-G~~~~~~g~v~e~~p~~r   91 (175)
T 2lf2_A           16 KTITIKREFAAVRAIVWEAF-TRAEI-LDQWWAPKPW-KAKTKSMDFKEGGTWLYAMVGPN-GEEHWSICEYAIIKPIER   91 (175)
T ss_dssp             TEEEEEEEESSCHHHHHHHH-TCHHH-HHHSSSSSSS-EEEEEEECCSTTCEEEEEEECSS-SCEEEEEEEECCCCSSSE
T ss_pred             ceEEEEEEEcCCHHHHHHHh-CCHHH-HhhCcCCCCc-cceEEEEeccCCCEEEEEEECCC-CCEEEeEEEEEEEcCCCE
Confidence            36888999999999999997 79995 8888642 12 12222344444444334333 22 222236678888887654


Q ss_pred             EEEEEEEecc--cc-ccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH-----HHHHHHHHHHHHHHHH
Q 047051           82 VFRYSIVEGG--IL-GFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN-----IKQGILTMVKAAERFL  153 (164)
Q Consensus        82 ~~~Y~i~eg~--~~-~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~k~ie~~l  153 (164)
                       +.|+....+  .. ...+.....++.|++.+ ++|+++.+..|.       +++....     +.+....++..|+++|
T Consensus        92 -l~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~~~-------~~~~~~~~~~~~~~~Gw~~~L~~L~~~l  162 (175)
T 2lf2_A           92 -FTGKDGFTDASGKLNTEMPRSNWDMRFIDKG-EITEVQYHISYD-------DVAQLEATIQMGFKEGITMAMENLDELL  162 (175)
T ss_dssp             -EEEEEEEESSTTCCCTTSCCEEEEEEEEEET-TEEEEEEEEECS-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEEEecCCCCCcCCCCCcEEEEEEEEECC-CCEEEEEEEecC-------CHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence             667754322  11 00122567889999986 479998887742       2332221     3556777888888887


Q ss_pred             hh
Q 047051          154 LA  155 (164)
Q Consensus       154 ~~  155 (164)
                      ..
T Consensus       163 e~  164 (175)
T 2lf2_A          163 VS  164 (175)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.65  E-value=8.6e-07  Score=65.23  Aligned_cols=143  Identities=9%  Similarity=0.078  Sum_probs=87.7

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCc-ceeeEEEecCCCCcccEEEEEee-cCCcceeEEEEEEEEeeCCCc
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQ-VISSIDLLEGDGGVGTIKKFNFT-EAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~-~v~s~e~~eGdg~~G~vR~~~~~-~g~~~~~~~kErl~~~D~~~~   81 (164)
                      .+++.++.|++|+++||+++ .|+.. +++|++. -+ .+...+++-.+|..-.+.+. ++ |..- +.-++..+++.++
T Consensus         8 ~~i~~~~~i~Ap~e~Vw~a~-tdpe~-~~~W~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~-G~~~-~~g~v~e~~p~~r   82 (164)
T 2l9p_A            8 NKIIFTRTFSAPINKVFDAY-TKREL-FEQWFHPQDA-SVTVYDFNATKGGSAFYAIQAPQ-MISY-TIAEYLQVDAPYY   82 (164)
T ss_dssp             SEEEECCEESSCHHHHHHHH-HCHHH-HTTTCCCTTC-EEEEEECCCSTTEEEEEEEEETT-EEEE-EEEEESCCBTTTE
T ss_pred             ceEEEEEEeCCCHHHHHHHh-CCHHH-HHhccCCCCc-eeeEEEEeccCCCEEEEEEECCC-CCEE-EEEEEEEEcCCCE
Confidence            46888999999999999997 79995 8888642 22 22333455445544334333 22 2212 6777888887655


Q ss_pred             EEEEEEEeccccccc---eeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-H-HHHHHHHHHHHHHHHHHhhC
Q 047051           82 VFRYSIVEGGILGFK---VNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-R-NIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~---~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~k~ie~~l~~~  156 (164)
                       +.|+-..++.-+.|   ......++.|++.+ ++|+++.+..|...    ..-+.. . .+.+....++..|+++|.+.
T Consensus        83 -l~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~~~~~----~~~~~~~~~~~~~Gw~~~L~~L~~~le~~  156 (164)
T 2l9p_A           83 -IEYLDYFATSKGEKDTSMPGMHITLNFEEVK-GKTTVTSTSTFPTE----SAAQQAIDMGVETGMNSTLNQLEKLLNQK  156 (164)
T ss_dssp             -EEEEEEEEBTTBSCCSSSCCEEEEEEECCCS-SSEEEEEEEECSST----THHHHHHHHTHHHHHHHHHHHHHHHHHSS
T ss_pred             -EEEEEEecCCCCCccCCCCceEEEEEEEECC-CCEEEEEEEEcCCH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence             77775432210001   22467889998875 47999888765321    011111 1 24567788889999888664


Q ss_pred             c
Q 047051          157 P  157 (164)
Q Consensus       157 ~  157 (164)
                      .
T Consensus       157 ~  157 (164)
T 2l9p_A          157 L  157 (164)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=98.61  E-value=3.7e-08  Score=71.85  Aligned_cols=128  Identities=8%  Similarity=0.067  Sum_probs=81.6

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      .+++.++.|++|+++||+++ .|+.. +++|+|. +      +++-.+|..-.+.+..|  .   +.-++..+++.. ++
T Consensus        10 ~~i~~~~~i~Ap~e~Vw~al-td~~~-~~~W~~~-~------~~~~~~Gg~~~~~~~~g--~---~~~~v~e~~p~~-~l   74 (152)
T 2kew_A           10 PDITKSITLEAPIQKVWETV-STSEG-IAKWFMP-N------DFQLKEGQEFHLQSPFG--P---SPCKVLAVQAPT-EL   74 (152)
T ss_dssp             CCEEEEEEECSCHHHHHHHS-SSSHH-HHHHHCS-C------CCCSCSSCCBCSSSSCC--S---CCBEEEEEETTT-EE
T ss_pred             cEEEEEEEECCCHHHHHHHH-hCHHH-HHHhcCC-C------CCCCCCCCEEEEEecCC--c---eEEEEEEEeCCc-EE
Confidence            46899999999999999997 79995 8999875 1      23333444333333222  2   455777788765 47


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEE-EEEcCCCCC-----ChHHHHHHHHHHHHHH-HHHHHHHhh
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIE-YESLGDSLL-----SEEDVRNIKQGILTMV-KAAERFLLA  155 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~-k~ie~~l~~  155 (164)
                      .|+...+        ....+++|+|.++ +|++.++.. |...++..+     ..+......+....++ .+|+++|..
T Consensus        75 ~~~~~~~--------~~~~~~~l~~~~~-gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~le~  144 (152)
T 2kew_A           75 SFEWDTE--------GWVVTFQLEDLGE-KTGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVEE  144 (152)
T ss_dssp             EEECTTS--------CCEEEEEEECCSS-CEEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHTC
T ss_pred             EEEEccC--------CEEEEEEEEECCC-CEEEEEEEEeccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            7775322        3467888998875 598888765 321100111     1122344566777888 888887754

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.53  E-value=3.1e-06  Score=63.93  Aligned_cols=123  Identities=8%  Similarity=0.071  Sum_probs=79.8

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      .+++.++.|++|+++||+++ .|+.. +++|+|. ....+.  ..|  |..+ +.+.+     ....-++..+++..+ +
T Consensus        36 ~~i~~~~~i~Ap~e~VW~al-tdp~~-l~~W~~~-~~~~d~--~~G--g~~~-~~~~~-----~~~~~~v~e~~p~~r-l  101 (184)
T 2nn5_A           36 IYFGTERAISASPQTIWRYL-TETDK-LKQWFPE-LEIGEL--GVN--GFWR-FILPD-----FEETMPFTDYAEEKY-L  101 (184)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HCHHH-HHHHCTT-EEEEEC--STT--CEEE-EEETT-----EEEEEEEEEEETTTE-E
T ss_pred             cEEEEEEEeCCCHHHHHHHH-cCHHH-HHHhCCC-cccccc--CCC--CEEE-EEEeC-----CCceEEEEEecCCCE-E
Confidence            36888999999999999997 79995 8999985 322232  122  3333 33321     135557888887764 6


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  155 (164)
                      .|+.- +         ...++.|+|..+++|+++++-.|.. + ......   ........++.+|+++|-.
T Consensus       102 ~~~~~-~---------~~v~~~l~~~~~~gT~l~~~~~~~~-g-~~~~~~---~~~~GW~~~L~~Lk~~le~  158 (184)
T 2nn5_A          102 GVTWD-T---------GIIYFDLKEQAPHQTLLVFSESLPE-N-FTTPRH---KDIAGWSIVLNRLKQVVET  158 (184)
T ss_dssp             EEEET-T---------EEEEEEEEEEETTEEEEEEEEEECT-T-CSSCHH---HHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEc-C---------eEEEEEEEECCCCCEEEEEEEeccC-C-ccchhh---HHHHHHHHHHHHHHHHHhc
Confidence            67652 1         4678889883345799999944322 1 111121   2456788889999999876

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=98.52  E-value=1e-06  Score=66.85  Aligned_cols=134  Identities=14%  Similarity=0.094  Sum_probs=88.4

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCC-------------cceeE
Q 047051            2 VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAV-------------KEFRY   68 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~-------------~~~~~   68 (164)
                      ...+++.++.|++|+++||+++ .|+.. +++|.+..       +.+-.+|..-.+.+....             +....
T Consensus        17 ~~~~i~~~~~i~Ap~e~Vw~al-tdpe~-~~~W~~~~-------~~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~~~   87 (191)
T 2k5g_A           17 DAQSIRFERLLPGPIERVWAWL-ADADK-RARWLAGG-------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIV   87 (191)
T ss_dssp             CCSSEEEEEEESSSSHHHHHHH-HCHHH-HTTTSCCC-------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEE
T ss_pred             CCCeEEEEEEeCCCHHHHHHHH-cCHHH-HhhcCCCC-------CCCccCCCEEEEEEcCCccccccCcccccccCCCce
Confidence            3456889999999999999997 79995 89999852       234345555555554210             01124


Q ss_pred             EEEEEEEeeCCCcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEE-EEEcCCCCCChHHHHHHHHHHHHHHH
Q 047051           69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIE-YESLGDSLLSEEDVRNIKQGILTMVK  147 (164)
Q Consensus        69 ~kErl~~~D~~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k  147 (164)
                      +.-++..+++..+ +.|+...++.   + .....++.|++.++ +|+++++.+ |.       .++......+....++.
T Consensus        88 ~~g~v~e~~pp~r-l~~~~~~~~~---~-~~~~v~~~l~~~~~-gT~l~~~~~~~~-------~~~~~~~~~~GW~~~L~  154 (191)
T 2k5g_A           88 ARHTLLRCEPPRV-LALTWGGGAG---E-APSEVLFELSEAGE-QVRLVLTHTRLA-------DRAAMLDVAGGWHAHLA  154 (191)
T ss_dssp             EEEEEEEEETTTE-EEEECCCCSS---S-SCCEEEEEEEECSS-SEEEEEEEECCC-------SHHHHHHHTTTTTTHHH
T ss_pred             eEEEEEEecCCCE-EEEEeecCCC---C-CCEEEEEEEEEcCC-CEEEEEEEecCC-------CHHHHHHHHHhHHHHHH
Confidence            6677888887665 7787644331   1 24567889999865 698888776 42       12333344556678888


Q ss_pred             HHHHHHhhCc
Q 047051          148 AAERFLLANP  157 (164)
Q Consensus       148 ~ie~~l~~~~  157 (164)
                      +|+++|...+
T Consensus       155 ~L~~~le~~~  164 (191)
T 2k5g_A          155 VLAGKLAGQA  164 (191)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHCCCC
Confidence            8888887654

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=98.46  E-value=3.9e-06  Score=61.95  Aligned_cols=135  Identities=15%  Similarity=0.099  Sum_probs=80.0

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      .++..+..+++|+++||+++ .|+. .+.+|.++...+.+..  .|  |.   +.+..|     .+.=++..+++..+ +
T Consensus        19 ~~i~~~r~~~ap~e~Vw~A~-Tdpe-~l~~W~~g~~~~~d~~--~G--G~---~~~~~G-----~~~g~v~ev~p~~r-l   83 (158)
T 3ni8_A           19 MSFEITEEYYVPPEVLFNAF-TDAY-TLTRLSRGSLAEVDLK--VG--GK---FSLFSG-----SILGEFTEITKPHK-I   83 (158)
T ss_dssp             CCEEEEEEESSCHHHHHHHH-HCHH-HHHHHTTTSCCEECCS--TT--CE---EEETTT-----TEEEEEEEEETTTE-E
T ss_pred             ceEEEEEEECCCHHHHHHHh-cCHH-HHHhhcCCCccEEEcc--CC--CE---EEEecC-----CEEEEEEEEeCCcE-E
Confidence            45788889999999999997 7999 4888887312222221  12  33   333334     13445666777654 6


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHH-HHHHHHHHHhh
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILT-MVKAAERFLLA  155 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~ie~~l~~  155 (164)
                      .|+---.+..  +-..-..++.|++..+++|+++.+.+-.+..+............+.-.. ++..|++||-.
T Consensus        84 v~tw~~~~~~--~~~~s~vt~~l~~~~~~~T~ltl~~~g~~~~~~~~~~~~~~~~~~GW~~~~L~~Lk~~Le~  154 (158)
T 3ni8_A           84 VEKWKFRDWN--ECDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVILGY  154 (158)
T ss_dssp             EEEEEETTSC--SSCCEEEEEEEEEEETTEEEEEEEEECCCSSCTTCCCCHHHHHHHHHHHTHHHHHHHTSCC
T ss_pred             EEEEEecCCC--CCCcEEEEEEEEecCCCCEEEEEEEEccCchhhhccchhHHHHHhChhHHHHHHHHHHhCc
Confidence            6654322221  1112467888988655689998887644433211111113334667777 68899888753

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.44  E-value=8e-06  Score=60.38  Aligned_cols=126  Identities=15%  Similarity=0.141  Sum_probs=69.9

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcE-E
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV-F   83 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~-~   83 (164)
                      ..+.+++|++|+++||+.+ +|+.+ +|.|+|+ ++++ + +.++   +-+... ....|   .++=|.+. |++-.. .
T Consensus        28 ~~~~si~I~ap~eeVy~~~-~D~e~-lP~W~~~-l~~~-~-~~~~---~~w~a~-~~p~G---~v~v~~~~-~~~~gv~d   94 (156)
T 2qpv_A           28 SRIIHLSVEKPWAEVYDFA-ANPGN-MPRWAAG-LAGG-L-EADG---EDWIAK-GGPLG---EVRVNFAP-HNEFGVID   94 (156)
T ss_dssp             EEEEEEEESSCHHHHHHHH-HCGGG-GGGTCGG-GTTC-C-EEET---TEEEEE-CSSSC---EEEEEECC-CCSSCBCC
T ss_pred             ceEEEEEEcCCHHHHHHHH-HChhh-HHHHHHh-hhhh-c-ccCC---CcEEEe-ccCCC---cEEEEEec-CCCceEEE
Confidence            4688999999999999996 89997 9999998 6554 2 2221   122222 12212   23322221 221122 2


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~  154 (164)
                      .|..+.++.      ...+.++|.|.++ ||.|+|++ |.+.+   .+...++.-...+..-++.+.+.|.
T Consensus        95 ~~~~l~~g~------~~~~~~rv~p~g~-GTeV~~tl-~~~pg---~~~~~~~~~~~~v~~dL~~LK~l~E  154 (156)
T 2qpv_A           95 HVVTLPDGL------KVYNALRVTPNGS-GTEVSFTL-LRLEG---MTDEDFEQDASAITADLEMLKSLLE  154 (156)
T ss_dssp             EEEECTTSC------EEEEEEEEEEETT-EEEEEEEE-ECCTT---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCc------EEEEEEEEEeCCC-CEEEEEEE-ecCCC---CChhhhhhhHHHHHHHHHHHHHHHh
Confidence            344433322      1334688889876 59999998 43222   2333343322345555555555543

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=98.41  E-value=5.3e-05  Score=56.66  Aligned_cols=144  Identities=12%  Similarity=0.075  Sum_probs=90.6

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee-c-CCcceeEEEEEEEEeeCCCc
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT-E-AVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~-~-g~~~~~~~kErl~~~D~~~~   81 (164)
                      ..+..+..|++|++++|+++ .|... .|+|.|. +.++++++-+++ -.+-.+.+. + ...+-..+.-+-...|.++ 
T Consensus        27 ~~~k~~~~v~~s~~~v~~~l-~D~~~-~~~W~~~-~~~~~vle~~~~-~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g-  101 (189)
T 3qsz_A           27 REFRGEVRLKAAADDVVKVL-RDANA-FRQWMPD-VAASELLKATDT-EQYHYLDNSAPWPVSNRDGVYHFTYEKAGDG-  101 (189)
T ss_dssp             CEEEEEEEESSCHHHHHHHH-HCGGG-GGGTSTT-EEEEEEEEECSS-EEEEEEEECCSSSCCCEEEEEEEEEEECTTS-
T ss_pred             EEEEEEEEEECCHHHHHHHH-HhHHH-hhhHHHh-cCEEEEEeecCC-ceEEEEEeecCCCcCCcceEEEEEEEECCCC-
Confidence            45778889999999999996 79995 8999996 788888875432 122233332 1 1122233333333233332 


Q ss_pred             EEEEEEEeccccc---c---ceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHHh
Q 047051           82 VFRYSIVEGGILG---F---KVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFLL  154 (164)
Q Consensus        82 ~~~Y~i~eg~~~~---~---~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l~  154 (164)
                      ++...+.......   .   -...+.+.+.++| ++++|.+.+....++.+  .++.--+. .+.+....+++.|.+++.
T Consensus       102 ~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G--~iP~~lvn~~~~~~~~~~l~~L~k~~~  178 (189)
T 3qsz_A          102 AITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG--SIPSWLANQTVVETPFGTLKALRSHLR  178 (189)
T ss_dssp             CEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS--SSCHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred             eEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3433332222100   1   1577889999999 88899999999999985  23332233 356677788888888765


Q ss_pred             h
Q 047051          155 A  155 (164)
Q Consensus       155 ~  155 (164)
                      +
T Consensus       179 ~  179 (189)
T 3qsz_A          179 Q  179 (189)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=98.36  E-value=3.8e-06  Score=60.37  Aligned_cols=130  Identities=11%  Similarity=0.040  Sum_probs=81.6

Q ss_pred             CccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCC
Q 047051            1 MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~   80 (164)
                      |...+++.++.|++|+++||+++ .|+.. +++|.+.. ..     .+-.+|..  +.+.+|  .   +.=++..+++.+
T Consensus         8 m~~~~i~~~~~i~ap~e~Vw~al-tdp~~-~~~W~~~~-~~-----~d~~~Gg~--~~~~~G--~---~~g~v~e~~p~~   72 (145)
T 1x53_A            8 IPTCKITLKETFLTSPEELYRVF-TTQEL-VQAFTHAP-AT-----LEADRGGK--FHMVDG--N---VSGEFTDLVPEK   72 (145)
T ss_dssp             CCEEEEEEEEEESSCHHHHHHHT-TCHHH-HHHHSCSC-CB-----CCCSTTCC--CBBTTT--T---EECCEEEEETTT
T ss_pred             ccccEEEEEEEECCCHHHHHHHh-CCHHH-HHHhcCCC-ce-----EECCCCCE--EEEECC--e---eEEEEEEEeCCC
Confidence            55578999999999999999997 79994 88997642 12     22222221  233344  1   334566677655


Q ss_pred             cEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHH-HHHHHHHHHhhC
Q 047051           81 HVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILT-MVKAAERFLLAN  156 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~ie~~l~~~  156 (164)
                      + +.|+-...+..  .-.....++.|++.+ ++|+++++....+..      + .....+.... ++..|+++|-..
T Consensus        73 ~-l~~~~~~~~~~--~~~~~~v~~~l~~~~-~gT~l~~~~~~~~~~------~-~~~~~~Gw~~~~l~~L~~~le~g  138 (145)
T 1x53_A           73 H-IVMKWRFKSWP--EGHFATITLTFIDKN-GETELCMEGRGIPAP------E-EERTRQGWQRYYFEGIKQTFGYG  138 (145)
T ss_dssp             E-EEEEEEETTSC--TTCCEEEEEECCBCS-SCEEEEEEEEEEEHH------H-HHHHHHTTHHHHHHHHHHHTCCC
T ss_pred             E-EEEEEecCCCC--CCCcEEEEEEEEECC-CCEEEEEEEECCCHH------H-HHHHHhchhHHHHHHHHHHHhcC
Confidence            4 77775433321  111346788888865 579999986544432      1 3344666776 788898887543

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=98.23  E-value=1.4e-05  Score=60.29  Aligned_cols=122  Identities=14%  Similarity=0.157  Sum_probs=80.1

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      .++..+..|++|+++||+++ .|+.. +++|.+..       +++-.+|..-.+.+..        .=++..+++.. ++
T Consensus        21 ~~i~~~r~i~Appe~Vw~al-Tdpe~-l~~W~~p~-------~~d~~~Gg~~~~~~~~--------~g~v~e~~pp~-rl   82 (181)
T 4fpw_A           21 RSIIIRQRYDAPVDEVWSAC-TDPNR-INRWFIEP-------KGDLREGGNFALQGNA--------SGDILRCEPPR-RL   82 (181)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HCHHH-HHHHSCCE-------ESCCSTTCEEEESSSC--------EEECCEEETTT-EE
T ss_pred             ceEEEEEEECCCHHHHHHHH-cChHH-HhhccCCC-------ccCCCCCCEEEEEecC--------CEEEEEEcCCc-EE
Confidence            56888999999999999997 79995 88998642       2343444432232211        12456677654 47


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      .|+...++.   +  ....++.|+|.+ ++|+++++....+       ++......+....+|..|++||-..
T Consensus        83 ~~tw~~~~~---~--~s~vt~~l~~~~-~gT~Ltl~~~~~~-------~e~~~~~~~GW~~~L~~L~~~L~G~  142 (181)
T 4fpw_A           83 TISWVYEGK---P--DSEVELRLSEEG-DGTLLELEHATTS-------EQMLVEVGVGWEMALDFLGMFIRGD  142 (181)
T ss_dssp             EEEEBCTTS---C--CEEEEEEEEEET-TEEEEEEEEEESC-------HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             EEEEEcCCC---C--cEEEEEEEEECC-CcEEEEEEEEcCC-------HHHHHHHHHhHHHHHHHHHHHhCCC
Confidence            788754432   2  456889999975 5799988876532       2334456677888999999998543

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=98.20  E-value=0.00024  Score=54.07  Aligned_cols=122  Identities=16%  Similarity=0.209  Sum_probs=80.0

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      .++..+..+++|+++||+++ .|+.. +.+|++.    ++   +|-.+|..  +.+...      ..-++..+++..+ +
T Consensus        32 ~~l~i~R~f~Ap~e~VW~Al-Tdpe~-l~~W~~~----~~---~d~r~GG~--~~~~~~------~~g~v~ev~pp~r-L   93 (192)
T 2luz_A           32 RSIIIRQRYDAPVDEVWSAC-TDPNR-INRWFIE----PK---GDLREGGN--FALQGN------ASGDILRCEPPRR-L   93 (192)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HCHHH-HTTTSCC----EE---ECCSTTSE--EEETTS------EEEEEEEEETTTE-E
T ss_pred             eEEEEEEEeCCCHHHHHHHH-cCHHH-HheeeCC----Cc---ccCccCcE--EEeecc------ccceEEEEecCee-E
Confidence            46778889999999999997 79994 8899864    22   33333332  233222      1224566777554 7


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      .|+-...+.   +  .-..++.|+|.++ +|+++.+-...       +++........-..+|..|+.||-..
T Consensus        94 ~~tw~~~~~---~--~~~vt~~L~~~g~-gT~Ltl~h~~~-------~~~~~~~~~~GW~~~Ld~L~~~L~g~  153 (192)
T 2luz_A           94 TISWVYEGK---P--DSEVELRLSEEGD-GTLLELEHATT-------SEQMLVEVGVGWEMALDFLGMFIRGD  153 (192)
T ss_dssp             EEEEEESSS---C--EEEEEEEEEEETT-EEEEEEEEEES-------CHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeecCC---C--CceEEEEEEEcCC-cEEEEEEEECC-------CHHHHHHHhccHHHHHHHHHHHhCCC
Confidence            787543332   2  3456889999875 69888776542       34444445567788999999999753

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.05  E-value=1e-05  Score=69.71  Aligned_cols=109  Identities=11%  Similarity=0.108  Sum_probs=84.7

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC--CcccEEEEEeecCCcceeEEEEEE--EEeeCCC
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG--GVGTIKKFNFTEAVKEFRYVKDRV--EIMDNEN   80 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg--~~G~vR~~~~~~g~~~~~~~kErl--~~~D~~~   80 (164)
                      +++.+..|++|+++||+.+ .|+.+ +++|.|. ...++++.+.|  .+|++- +.+..+    ..+.-++  +.+|+..
T Consensus         2 ~~~~~~~i~~p~~~v~~~~-~~~~~-~~~~~p~-~~~~~~~~~~~~~~~G~~~-~~~~~~----~~w~~~~~~t~~~~~~   73 (516)
T 3oh8_A            2 SLTTSHFIPFPREMVWDWH-TRKGA-VARLTPP-FIPLNPITQAERLADGTTI-FSLPAG----LKWVARHDLSGFLNGS   73 (516)
T ss_dssp             CEEEEEEESSCHHHHHHHH-HSTTH-HHHHSCT-TSSCEECSCCSCSSSCEEE-EECSTT----CEEEEEECGGGCBTTT
T ss_pred             eEEEEEEccCCHHHHHHHh-cCcch-HHHhCCC-CCceEEecCCCCCcCCeEE-EecCCC----cEEEEEEccccccCCC
Confidence            4788999999999999996 79997 8999997 66788875444  678877 776543    3577777  7676665


Q ss_pred             cEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEc
Q 047051           81 HVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESL  125 (164)
Q Consensus        81 ~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~  125 (164)
                       .+......|+..  -+.++.-+..|++.++ +|++..+++|...
T Consensus        74 -~F~d~~~~gp~~--~~~~w~h~h~f~~~~~-gt~~~d~~~~~~p  114 (516)
T 3oh8_A           74 -RFTDVCLTAPVK--ALANWRHVHNFVDQDG-GTLITDSVSTRLP  114 (516)
T ss_dssp             -EEEEECCSCSSG--GGSSCEEEEEEEEETT-EEEEEEEEECSSC
T ss_pred             -eEEEEeccCccc--ceeeeEEEEEEEEcCC-CcEEEEEEEeeCc
Confidence             477888777532  2889999999999875 6999999998743

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=97.98  E-value=0.0011  Score=50.24  Aligned_cols=148  Identities=13%  Similarity=-0.006  Sum_probs=93.1

Q ss_pred             EEEEEEEEec-CCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeec-C-CcceeEEEEE-EEEeeCC
Q 047051            4 GSIVGEYKSP-IAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTE-A-VKEFRYVKDR-VEIMDNE   79 (164)
Q Consensus         4 ~~~~~e~~i~-apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~-g-~~~~~~~kEr-l~~~D~~   79 (164)
                      ..+..+..++ +|++++++++ .|... .++|.|. +.++++++-+|  ..+-.+.+.. . ..+-..+-.| ...+|+.
T Consensus        52 ~~~k~~~~i~~~~~~~v~~~l-~d~~~-r~~Wd~~-~~~~~vle~~~--~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~  126 (214)
T 1ln1_A           52 YEYKVFGVLEDCSPTLLADIY-MDSDY-RKQWDQY-VKELYEQECNG--ETVVYWEVKYPFPMSNRDYVYLRQRRDLDME  126 (214)
T ss_dssp             EEEEEEEEETTSCHHHHHHHH-HCHHH-HHHHCTT-EEEEEEEEETT--EEEEEEEECCCTTSCCEEEEEEEEEEEECST
T ss_pred             EEEEEEEEECCCCHHHHHHHH-cCHHH-HHHHHHH-HhhEEEeccCC--CEEEEEEEEcCCCCCCceEEEEEEEEecccC
Confidence            4577888995 9999999997 79884 8999996 77888887655  3455555542 1 1111233332 2234444


Q ss_pred             CcEE---EEEEEecccc--ccc---eeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHH
Q 047051           80 NHVF---RYSIVEGGIL--GFK---VNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAE  150 (164)
Q Consensus        80 ~~~~---~Y~i~eg~~~--~~~---~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie  150 (164)
                      ..++   ..+-++.+..  ...   ...+.+.+.+.|.++++|.+.+....++.+.  ++.--+. .+.+....+++.|.
T Consensus       127 g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G~--iP~~l~n~~~~~~~~~~l~~l~  204 (214)
T 1ln1_A          127 GRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ--IPSWLINWAAKNGVPNFLKDMA  204 (214)
T ss_dssp             TCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC--CCHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCCCc--ccHHHHHHHHHHHhHHHHHHHH
Confidence            3322   1111221111  011   5668888999999888999999999999852  3332223 35567788899999


Q ss_pred             HHHhhCch
Q 047051          151 RFLLANPQ  158 (164)
Q Consensus       151 ~~l~~~~~  158 (164)
                      +++.+.++
T Consensus       205 k~~~~y~~  212 (214)
T 1ln1_A          205 RACQNYLK  212 (214)
T ss_dssp             HHHHTC--
T ss_pred             HHHHhccc
Confidence            98876553

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=97.82  E-value=3.4e-05  Score=56.34  Aligned_cols=137  Identities=12%  Similarity=0.048  Sum_probs=74.3

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcce------eeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeC
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVI------SSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDN   78 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v------~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~   78 (164)
                      .+..+..+++|+++||+++ .| .  +.+|++.-+      ..+++. ..|  |.. .+...+| ...  ..=++..+|+
T Consensus         5 ~i~~~r~~~Ap~e~Vw~A~-Td-~--l~~W~~p~~~~~~~~~~~~~d-r~G--G~~-~~~~~~G-~~~--~~g~v~ev~p   73 (155)
T 1zxf_A            5 FVRHSVTVKADRKTAFKTF-LE-G--FPEWWPNNFRTTKVGAPLGVD-KKG--GRW-YEIDEQG-EEH--TFGLIRKVDE   73 (155)
T ss_dssp             CEEEEEEESSHHHHHHHHH-TT-C--SSSSSSGGGSTTTTCSSCEEE-TTT--TEE-ECCCTTT-SCC--CCEEEEEEET
T ss_pred             eEEEEEEEeCCHHHHHHHH-Hh-h--HHhhcCCCccccCCCceEEEE-CCC--CEE-EEECCCC-CeE--eEEEEEEECC
Confidence            4778889999999999997 67 2  456653222      234442 223  333 2222233 211  1124566776


Q ss_pred             CCcEEEEEE-EeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCC-ChHHH-HHHHHHHHHHHHHHHHHHhh
Q 047051           79 ENHVFRYSI-VEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLL-SEEDV-RNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        79 ~~~~~~Y~i-~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~k~ie~~l~~  155 (164)
                      ..+ +.|+- .+++....+-.....++.|++.++|+|+++.+.......  .+ .+... ..+.+.-..++..|+++|.+
T Consensus        74 p~r-l~~tw~~~~~~~~~~~~~s~vt~~l~~~~~g~T~ltl~~~~~~~~--~~~~~~~~~~~~~~GW~~~l~~L~~~l~~  150 (155)
T 1zxf_A           74 PDT-LVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRM--GTKHAKRVRNGMDKGWPTILQSFQDKIDE  150 (155)
T ss_dssp             TTE-EEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSSTTS--CHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             CCE-EEEEEecCCCCCCCCCCcEEEEEEEEECCCCcEEEEEEEeccccc--ccchhHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            654 77773 222100011123457899999877669888776642211  00 11112 12233567888888888754

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.72  E-value=0.0012  Score=47.56  Aligned_cols=125  Identities=11%  Similarity=0.178  Sum_probs=79.4

Q ss_pred             CccEEEEEEEEecCCH-HHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCC
Q 047051            1 MVLGSIVGEYKSPIAV-ERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         1 m~~~~~~~e~~i~apa-~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~   79 (164)
                      |...+++.|+.|++|+ ++||+++ .++.. +..|+..-+   .. .|.     .-.+...+.    ....=+++.+++.
T Consensus         1 m~k~~i~~e~~i~A~~~~~VW~~I-StPeg-L~~Wfad~v---~~-~g~-----~~~F~w~~~----~~~~~~v~~~~~~   65 (136)
T 2lio_A            1 MKKEKIHLEYLLNATSKNILWSAI-STPTG-LEDWFADKV---VS-DDK-----TVTFCWGKT----EQRQAGIVAIRAY   65 (136)
T ss_dssp             CCCEEEEEEEEECTTSCTHHHHGG-GSHHH-HTTTSSSEE---EE-ETT-----EEEEESSSS----SEEEEEEEEEETT
T ss_pred             CCCCcEEEEEEecCChHHHHHHHh-CChhh-hhcccCCCC---cc-cCc-----eEEEEeCCC----CcEeEEEEEEcCC
Confidence            6678999999999999 9999996 79985 788887533   22 332     223333331    2456678878877


Q ss_pred             CcEEEEEEEeccccccceeEEEEEEEEeeCCC-CceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051           80 NHVFRYSIVEGGILGFKVNSYVADVTFTSSSD-GDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~d-g~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~  154 (164)
                      ++ ++|+=...+     -.++...+++...+. +++.++.+ +|-..       +.++.+...=...+..+.+||-
T Consensus        66 ~~-i~FrW~~~~-----~~~~~~e~~l~~~~~t~~~~L~vt-dFa~~-------~~~e~~~~gW~~~l~~Lk~~lg  127 (136)
T 2lio_A           66 SF-IRFHWLDDE-----NERDYFEIKMSYNELTGDYVLEIT-DFSEA-------DEADDLKELWDSQVSKLRRTCG  127 (136)
T ss_dssp             TE-EEEEESSSS-----SSSCEEEEEEEECTTTSCEEEEEE-EEECH-------HHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CE-EEEEccCCC-----CCceEEEEEEEecCCCCcEEEEEe-cCCCc-------cchhHHHhhHHHHHHHHHHHhh
Confidence            76 888874432     234556777766652 36888777 55422       2243344555566666666654

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=97.49  E-value=0.015  Score=42.85  Aligned_cols=134  Identities=16%  Similarity=0.159  Sum_probs=79.6

Q ss_pred             EEEEEEEecCC---------HHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEE
Q 047051            5 SIVGEYKSPIA---------VERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEI   75 (164)
Q Consensus         5 ~~~~e~~i~ap---------a~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~   75 (164)
                      ++++.++||-|         .+++|+-|+....+ -..++| .+.+|++++..+ ..-.|.++|+++     .++|+++ 
T Consensus         2 ~f~htvpIN~p~~p~~p~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vlse~~-~~~~R~l~fg~~-----~i~e~vt-   72 (157)
T 2ffs_A            2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRARE-PQYFVV-GLERFEILVDDG-DRLHRRLYLPGL-----VVEDEVV-   72 (157)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHC-GGGTCT-TCCEEEEEEECS-SEEEEEEEETTE-----EEEEEEE-
T ss_pred             ceeEEEecCCCCCCCCCccCHHHHHHHHHHHhcC-hhhccc-ccCeEEEEecCC-CeEEEEEEECCC-----ccceEEE-
Confidence            36788888876         36899998655554 234677 499999986432 267899999765     6889988 


Q ss_pred             eeCCCcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCC-CCC----hHHH-HHHHHHHHHHHHHH
Q 047051           76 MDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS-LLS----EEDV-RNIKQGILTMVKAA  149 (164)
Q Consensus        76 ~D~~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~-~~~----~~~~-~~~~~~~~~~~k~i  149 (164)
                      +.+..+ +.|.+-.....  +=.+  -++.++...+|  .+-.++.|+..... ...    .+.. .+.+++....++.|
T Consensus        73 l~~~~~-v~f~~~~t~~~--~gs~--ltn~Iee~~~g--~L~lrF~ye~~~p~~s~e~~~~~~~~~~ay~~ad~~Tv~~i  145 (157)
T 2ffs_A           73 LKAPDS-AHYSIKPSAEV--AGGS--LDMTIEEPEPG--SLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATI  145 (157)
T ss_dssp             EETTTE-EEEEECCCSSS--BEEE--EEEEEEEEETT--EEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCcE-EEEEcccccCC--CCce--EEEEEeeCCCC--cEEEEEEEEccCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665555 78888663211  1122  33444322223  55556666654322 111    1112 23555666777777


Q ss_pred             HHHHh
Q 047051          150 ERFLL  154 (164)
Q Consensus       150 e~~l~  154 (164)
                      -++..
T Consensus       146 Rel~~  150 (157)
T 2ffs_A          146 RDRFG  150 (157)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            66543

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=96.63  E-value=0.14  Score=38.72  Aligned_cols=148  Identities=14%  Similarity=0.095  Sum_probs=85.6

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeec---C-CcceeEEEEEEEEeeCC
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTE---A-VKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~---g-~~~~~~~kErl~~~D~~   79 (164)
                      .+..+..+++|+++||+.+..|+.. .++|.+. +.++++++-- +.- .|-......   + ..+-..+--|....++.
T Consensus        56 ~~k~~~~v~~~~~~v~~~l~~d~~~-r~~Wd~~-~~~~~vle~~~~~t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~  132 (221)
T 3p0l_A           56 VFRLEVVVDQPMERLYEELVERMEA-MGEWNPN-VKEIKVLQKIGKDT-FITHELAAEAAGNLVGPRDFVSVRCAKRRGS  132 (221)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTGGG-TTTSCTT-CSEEEEEEECSSSE-EEEEEEECC---CCSCCEEEEEEEEEEECSS
T ss_pred             EEEEEEEEcCCHHHHHHHHHhccch-hhhcCcc-hheEEEEEecCCCe-EEEEEeeccccCCccCCceEEEEEEEEEcCC
Confidence            4667778899999999986358885 7899986 7888887742 211 122222121   1 12223333333323333


Q ss_pred             CcEEEEEEEecccc--cc---ceeEEEEEEEEeeCCCC--ceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHH
Q 047051           80 NHVFRYSIVEGGIL--GF---KVNSYVADVTFTSSSDG--DCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAER  151 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~--~~---~~~~y~~ti~v~~~~dg--~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~  151 (164)
                      ...+...=++-+..  ..   -...+.+.+.+.|.+++  +|.+.|....++.+.  +|.--+. .+.+....+++.+.+
T Consensus       133 ~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~Lr~  210 (221)
T 3p0l_A          133 TCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW--LPKSIINQVLSQTQVDFANHLRK  210 (221)
T ss_dssp             CEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            33222122222211  01   12345567888998876  799999999998864  3333233 345677788899988


Q ss_pred             HHhhCc
Q 047051          152 FLLANP  157 (164)
Q Consensus       152 ~l~~~~  157 (164)
                      ++...+
T Consensus       211 ~~~~~~  216 (221)
T 3p0l_A          211 RLESHP  216 (221)
T ss_dssp             HTC---
T ss_pred             HHhhch
Confidence            887544

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=95.99  E-value=0.055  Score=42.77  Aligned_cols=149  Identities=17%  Similarity=0.071  Sum_probs=86.5

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecC-CCCcccEEEEEeec--C-CcceeEEEEEEEEe-e-
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEG-DGGVGTIKKFNFTE--A-VKEFRYVKDRVEIM-D-   77 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG-dg~~G~vR~~~~~~--g-~~~~~~~kErl~~~-D-   77 (164)
                      ..+..+..+++|++.||+.+ .|... .+.|.+. ++++++++- ++. -.|-.+..+.  + ..+-..+.-|-..- + 
T Consensus        88 l~~k~~~~v~~~~~~v~~~L-~D~~~-R~~WD~~-~~~~~vle~id~~-~ivY~~~~p~~~~~v~~RDFV~lr~~r~~~~  163 (258)
T 3fo5_A           88 LSFHMEMVVHVDAAQAFLLL-SDLRQ-RPEWDKH-YRSVELVQQVDED-DAIYHVTSPALGGHTKPQDFVILASRRKPCD  163 (258)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HCGGG-GGGTCTT-CCEEEEEEEEETT-EEEEEEEECCCTTCSSCEEEEEEEEEECCSS
T ss_pred             eEEEEEEEEeCCHHHHHHHH-hCchh-HhHhhhh-ccEEEEEEEcCCC-eEEEEEecCCccCCCCCCEEEEEEEEEeccC
Confidence            34677888999999999997 69985 7999996 778888753 221 1233333332  1 12223444343321 2 


Q ss_pred             CCC-cEEEEEEEecccc--cc---ceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH---HHHHHHHHHHH
Q 047051           78 NEN-HVFRYSIVEGGIL--GF---KVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN---IKQGILTMVKA  148 (164)
Q Consensus        78 ~~~-~~~~Y~i~eg~~~--~~---~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~---~~~~~~~~~k~  148 (164)
                      +.+ ..+...=++-+..  ..   -...+.+.+.+.|.++++|.+.+....+|..    -|--...   +-+.+...+++
T Consensus       164 ~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dpG~----lP~~~~n~~g~s~~~~~t~~~  239 (258)
T 3fo5_A          164 NGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATPGV----LNYVTTNVAGLSSEFYTTFKA  239 (258)
T ss_dssp             TTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCGGG----HHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCCCC----CCceEEeccccchHHHHHHHH
Confidence            222 3444333333211  01   1246678899999998899999977776631    2211111   11344566789


Q ss_pred             HHHHHhhCchhh
Q 047051          149 AERFLLANPQCL  160 (164)
Q Consensus       149 ie~~l~~~~~~~  160 (164)
                      +.+||..+.|-.
T Consensus       240 ~~~fl~~~~~~~  251 (258)
T 3fo5_A          240 CEQFLLDNRNDL  251 (258)
T ss_dssp             HHHHHHHTC---
T ss_pred             HHHHHHhccccc
Confidence            999999887763

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=95.63  E-value=0.51  Score=35.77  Aligned_cols=145  Identities=8%  Similarity=0.017  Sum_probs=83.0

Q ss_pred             EEEEEEecCCHHHHH-HHHhcCcccccccccCcceeeEEEecC-CCCcccEEEEEeec---C-CcceeEEEEEEEEeeCC
Q 047051            6 IVGEYKSPIAVERLW-KALICDAHNFMPKALPQVISSIDLLEG-DGGVGTIKKFNFTE---A-VKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         6 ~~~e~~i~apa~~vW-~~~~~d~~~~~p~~~P~~v~s~e~~eG-dg~~G~vR~~~~~~---g-~~~~~~~kErl~~~D~~   79 (164)
                      +..+..+++|+++|+ .++ .|... .++|.+. +.++++++- ++. -.|-.....+   . ..+-..+.-|-...++.
T Consensus        68 ~k~~~~v~~~~~~v~~~~~-~d~~~-r~~Wd~~-~~~~~vle~~~~~-t~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~~  143 (229)
T 1em2_A           68 FILKTFLPCPAELVYQEVI-LQPER-MVLWNKT-VTACQILQRVEDN-TLISYDVSAGAAGGVVSPRDFVNVRRIERRRD  143 (229)
T ss_dssp             EEEEEEESSCHHHHHHHTT-TCHHH-HTTTCTT-EEEEEEEEEETTT-EEEEEEEECCBTTTTBCCEEEEEEEEEEECSS
T ss_pred             EEEEEEecCCHHHHHHHHH-hCccc-hhhcccc-cceEEEEEecCCC-eEEEEEEecCcCCCCcCCCeeEEEEEEEEcCC
Confidence            455677899999999 664 78885 7899986 788888774 221 1222222222   1 11223333333333444


Q ss_pred             CcEEEEEEEeccccc-----cceeEEEEEEEEeeCC--CCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHH
Q 047051           80 NHVFRYSIVEGGILG-----FKVNSYVADVTFTSSS--DGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAER  151 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~~-----~~~~~y~~ti~v~~~~--dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~  151 (164)
                      ...+...=++.+...     .-...+.+.+.+.|..  +++|.+.|....++.+.  ++.--+. .+...+..+++.+.+
T Consensus       144 ~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~l~n~~~~~~~~~~~~~Lr~  221 (229)
T 1em2_A          144 RYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR--LPRYLIHQSLAATMFEFAFHLRQ  221 (229)
T ss_dssp             EEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            333322222222210     0133455678888864  45799999999998863  3332232 355667778888888


Q ss_pred             HHhhC
Q 047051          152 FLLAN  156 (164)
Q Consensus       152 ~l~~~  156 (164)
                      ++.+.
T Consensus       222 ~~~~~  226 (229)
T 1em2_A          222 RISEL  226 (229)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            77654

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=95.60  E-value=0.19  Score=38.87  Aligned_cols=141  Identities=9%  Similarity=0.013  Sum_probs=75.4

Q ss_pred             EEEEEe-cCCHHHHHHHHhcCcccccccccCcceeeEEEecC-CCCcccEEEEEeec--CCcceeEEEEEEEEee----C
Q 047051            7 VGEYKS-PIAVERLWKALICDAHNFMPKALPQVISSIDLLEG-DGGVGTIKKFNFTE--AVKEFRYVKDRVEIMD----N   78 (164)
Q Consensus         7 ~~e~~i-~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG-dg~~G~vR~~~~~~--g~~~~~~~kErl~~~D----~   78 (164)
                      .....+ ++|++.++.++ .|+.. .++|-|. +.++++++- ++ -+.|-.+.+..  ...+-..+--|-...+    +
T Consensus        76 K~~~~~~~~~~~~v~~~l-~d~~~-r~~Wd~~-~~~~~vle~i~~-~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~  151 (255)
T 2e3n_A           76 KATHAVKGVTGHEVCNYF-WNVDV-RNDWETT-IENFHVVETLAD-NAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTE  151 (255)
T ss_dssp             EEEEEEETCCHHHHHHHH-HCGGG-HHHHCCS-EEEEEEEEEEET-TEEEEEEEECCCTTSCCEEEEEEEEEEEECCSST
T ss_pred             EEEEEEcCCCHHHHHHHH-hCcch-Hhhhhhh-cceeEEEEEcCC-CCEEEEEEeecCCCcCCceeEEEEEEEecccccc
Confidence            334455 49999999997 79985 8999986 888888875 32 12455555542  1122233333322222    2


Q ss_pred             C--Cc--EEEEEEEeccccccceeE-EEEE--------EEEeeC--------CCCceeEEEEEEEEEcCCCCCChHHHHH
Q 047051           79 E--NH--VFRYSIVEGGILGFKVNS-YVAD--------VTFTSS--------SDGDCFAKLKIEYESLGDSLLSEEDVRN  137 (164)
Q Consensus        79 ~--~~--~~~Y~i~eg~~~~~~~~~-y~~t--------i~v~~~--------~dg~s~v~w~~~~~~~~~~~~~~~~~~~  137 (164)
                      .  +.  .+.+++.-...  .+-++ .++.        .-+.|.        ++++|.+.|....++.+  .++.--++.
T Consensus       152 ~g~~~~~i~~~Sv~~~~~--P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G--~iP~~lvn~  227 (255)
T 2e3n_A          152 NDPETWIVCNFSVDHDSA--PLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG--WAPASVLRA  227 (255)
T ss_dssp             TSCCEEEEEEEECCCTTS--CCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS--CCCHHHHHH
T ss_pred             CCCCEEEEEEeccCCCCC--CCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC--ccCHHHHHH
Confidence            1  11  22333322111  11111 2222        222332        23479999999999886  233322332


Q ss_pred             -HHHHHHHHHHHHHHHHhh
Q 047051          138 -IKQGILTMVKAAERFLLA  155 (164)
Q Consensus       138 -~~~~~~~~~k~ie~~l~~  155 (164)
                       +...+..+++.|.+|+.+
T Consensus       228 ~~~~~~~~~l~~L~k~v~~  246 (255)
T 2e3n_A          228 VAKREYPKFLKRFTSYVQE  246 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHH
Confidence             455667788888887763

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=94.33  E-value=1.2  Score=33.56  Aligned_cols=144  Identities=10%  Similarity=-0.026  Sum_probs=82.4

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecC-CCCcccEEEEEeec--C--CcceeEEEEEEEEeeCC
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEG-DGGVGTIKKFNFTE--A--VKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG-dg~~G~vR~~~~~~--g--~~~~~~~kErl~~~D~~   79 (164)
                      .+..+..+++|++++++.+ .|... -++|-+. +.++++++- ++. -.|-...+..  .  ..+-..+--|-...++.
T Consensus        68 ~~k~~~~v~~~~~~v~~~l-~d~~~-r~~Wd~~-~~~~~vle~id~~-~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~  143 (224)
T 1jss_A           68 LYKAQGVMDDVVNNVIDHI-RPGPW-RLDWDRL-MTSLDVLEHFEEN-CCVMRYTTAGQLLNIISPREFVDFSYTVGYEE  143 (224)
T ss_dssp             EEEEEEEESSCHHHHHHHH-SSSTT-HHHHCSS-EEEEEEEEECSTT-EEEEEEEECCBTTTTBCCEEEEEEEEEEEETT
T ss_pred             EEEEEEEEeCCHHHHHHHH-hCccc-ccccccc-eeeEEEEEEcCCC-eEEEEEEcccccCCCCCCCeEEEEEEEEEcCC
Confidence            4567888999999999997 78775 5899986 788888874 221 1222222221  1  12323343333323344


Q ss_pred             CcEEEEEEEecccccc---ceeEEEEEEEEeeCCCC--ceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHH
Q 047051           80 NHVFRYSIVEGGILGF---KVNSYVADVTFTSSSDG--DCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFL  153 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~~~---~~~~y~~ti~v~~~~dg--~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l  153 (164)
                      ...+...-++-+....   -...+.+.+.+.|.+++  +|.+.|.+..++.+..  +.--+. .+......+++.+.+++
T Consensus       144 ~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~i--P~~lvn~~~~~~~~~~~~~Lr~~~  221 (224)
T 1jss_A          144 GLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMI--PQSAVDTAMASTLANFYSDLRKGL  221 (224)
T ss_dssp             EEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCC--CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCCc--cHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4332222222111101   23345567888897654  7999999999988632  332232 24455667777777665


Q ss_pred             h
Q 047051          154 L  154 (164)
Q Consensus       154 ~  154 (164)
                      .
T Consensus       222 ~  222 (224)
T 1jss_A          222 R  222 (224)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=92.48  E-value=2.6  Score=31.69  Aligned_cols=148  Identities=7%  Similarity=-0.045  Sum_probs=81.4

Q ss_pred             EEEEEEEecCCHHHHHHHHh-cCcccccccccCcceeeEEEecCCCCcccEEE-EEeec--C-CcceeEEEEEEEEeeCC
Q 047051            5 SIVGEYKSPIAVERLWKALI-CDAHNFMPKALPQVISSIDLLEGDGGVGTIKK-FNFTE--A-VKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~-~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~-~~~~~--g-~~~~~~~kErl~~~D~~   79 (164)
                      .+..+..+++|++++++.+. .|... .++|.+. +.++++++--.+-..|-. +....  + ..+-..+--|-...++.
T Consensus        68 ~~k~~~~v~~~~~~v~~~l~~~d~~~-r~~Wd~~-~~~~~vle~i~~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~  145 (231)
T 2r55_A           68 LYRGEGIVYGTLEEVWDCVKPAVGGL-RVKWDEN-VTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYED  145 (231)
T ss_dssp             EEEEEEEESSCHHHHHHHHCC--CCS-HHHHCTT-CSEEEEEEECSSSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTT
T ss_pred             EEEEEEEECCCHHHHHHHHHhhCcch-hhhhccc-cceeEEEEEcCCCEEEEEEEeccccCCccCCCeEEEEEEEEEcCC
Confidence            35667788999999999960 27774 7899986 778887764221122211 21111  1 12223343333333333


Q ss_pred             C-cEEEEEEEeccccccc------eeEEEEEEEEeeCC--CCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHH
Q 047051           80 N-HVFRYSIVEGGILGFK------VNSYVADVTFTSSS--DGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAA  149 (164)
Q Consensus        80 ~-~~~~Y~i~eg~~~~~~------~~~y~~ti~v~~~~--dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~i  149 (164)
                      + ..+...=++-+.. .+      ...+.+-+.+.|..  +++|.+.|....++.+.  .+..-+. .+...+...++.|
T Consensus       146 g~~vi~~~Sv~~~~~-P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~L  222 (231)
T 2r55_A          146 GTISSNATHVEHPLC-PPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY--LPQNVVDSFFPRSMTRFYANL  222 (231)
T ss_dssp             SCEEEEEEECCCTTS-CCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS--CCHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEeccCCCC-CCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC--ccHHHHHHHHhHhHHHHHHHH
Confidence            2 3322222222211 11      22334556788864  45899999999998863  3332222 3555667788888


Q ss_pred             HHHHhhCc
Q 047051          150 ERFLLANP  157 (164)
Q Consensus       150 e~~l~~~~  157 (164)
                      .+++.+.+
T Consensus       223 r~~~~~~~  230 (231)
T 2r55_A          223 QKAVKQFH  230 (231)
T ss_dssp             HHHHHGGG
T ss_pred             HHHHHHhc
Confidence            88776543

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=91.05  E-value=4.2  Score=31.11  Aligned_cols=144  Identities=8%  Similarity=-0.066  Sum_probs=84.7

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecC-CCCcccEEEEEeecC--CcceeEEEEEEEE--eeCC
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEG-DGGVGTIKKFNFTEA--VKEFRYVKDRVEI--MDNE   79 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG-dg~~G~vR~~~~~~g--~~~~~~~kErl~~--~D~~   79 (164)
                      .+..+..|++++++++..+..|    .++|.+. +.++++++- ++. -.|-...+..-  ..+-..+.-|-..  +++.
T Consensus        76 ~~K~~~~v~~~~~~v~~~ll~d----r~~Wd~~-~~~~~vle~id~~-~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g  149 (237)
T 2pso_A           76 LWKASVEVEAPPSVVLNRVLRE----RHLWDED-FVQWKVVETLDRQ-TEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKG  149 (237)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHC----GGGTCTT-BCCCEEEEEEETT-EEEEEEEECCSSSCCCEEEEEEEEEESCCGGG
T ss_pred             EEEEEEEEcCChHHHHHHHHhh----hhhHHhh-hceEEEEEEcCCC-cEEEEEEecCCCCcCCeEEEEEEEEEEECCCC
Confidence            4677889999999988654456    3789986 667787764 221 12333333311  1222334334332  2445


Q ss_pred             CcEEEEEEEecccc--c--cceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051           80 NHVFRYSIVEGGIL--G--FKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~--~--~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  155 (164)
                      ...+..+-++.+..  .  .-...+.+.+.+.|.++++|.+.|....++.+.. |.-- .+.+.+.....++.|.+++.+
T Consensus       150 ~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~G~i-P~~l-n~~~~~~~~~~l~~LR~~~~~  227 (237)
T 2pso_A          150 MCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKGHS-PEWY-SKGFGHLCAAEVARIRNSFQP  227 (237)
T ss_dssp             CEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSSSC-TTTT-TTHHHHHHHHHHHHHHHTTSC
T ss_pred             EEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeCCCCCc-hHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence            55554444443211  0  1234567888899998889999999999998632 2211 123455566777777777765


Q ss_pred             C
Q 047051          156 N  156 (164)
Q Consensus       156 ~  156 (164)
                      .
T Consensus       228 ~  228 (237)
T 2pso_A          228 L  228 (237)
T ss_dssp             C
T ss_pred             h
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	3e-48
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	5e-47
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	3e-46
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	4e-46
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	2e-42
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	1e-37
d1vjha_	120	d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha	3e-13

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score =  151 bits (383), Expect = 3e-48
 Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 1/150 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S I   R++KA I D    +PK  PQ ISS++ +EG+GG GTIKK NF E    F+Y
Sbjct: 8   EATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFP-FKY 66

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VKDRV+ +D+ N  + YS++EGG +G  +     ++   ++ DG C  K+  +Y + G+ 
Sbjct: 67  VKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNH 126

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
            +  E V+  K+   T+++A E +LLA+  
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAHSD 156

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score =  148 bits (375), Expect = 5e-47
 Identities = 52/150 (34%), Positives = 80/150 (53%), Gaps = 1/150 (0%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E+ S I   RL+KA + DA N +PK  PQ I   ++LEGDGG GTIKK  F E  + + Y
Sbjct: 8   EFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQ-YGY 66

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           VK +++ +D EN+ + Y+++EG  LG  +     +    +S  G    K    Y + G+ 
Sbjct: 67  VKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNV 126

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
            + EE V+  K+    + K  E +L  +P 
Sbjct: 127 EIKEEHVKAGKEKASNLFKLIETYLKGHPD 156

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score =  146 bits (369), Expect = 3e-46
 Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 2/149 (1%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S IA  RL+KAL+ DA   +PKA  + I SI+ +EG+GG GTIKK    E  +  +Y
Sbjct: 8   ESTSTIAPARLYKALVKDADAIIPKA-VEAIQSIETVEGNGGPGTIKKLTLIEGGE-TKY 65

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           V  ++E +D  N  + YSIV G  L   +     +      ++G    K+ I+ E+ GD+
Sbjct: 66  VLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDA 125

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANP 157
             +EE+ +  K       KA E +L A+P
Sbjct: 126 QPNEEEGKAAKARGDAFFKAIENYLSAHP 154

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score =  145 bits (368), Expect = 4e-46
 Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 2/148 (1%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S ++ E++++  + D    +PKA P    S+++ +GDGG GT+K     +       
Sbjct: 8   ELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPDGGP-ITT 65

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           +  R++ ++ E   F YS+++G IL   + S    V    ++DG    K    + + GD+
Sbjct: 66  MTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDA 125

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
           ++ EE+++   +    + KA E +L+AN
Sbjct: 126 VVPEENIKYANEQNTALFKALEAYLIAN 153

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score =  136 bits (345), Expect = 2e-42
 Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S +A  +L+KAL  D+   +PK +   I S++++EG+GG GTIKK           +
Sbjct: 8   EQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIHDGH-TSF 65

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           V  +++ +D  N  + YSI+ G  L   +     +       DG    K+ +++ + GD 
Sbjct: 66  VLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV 125

Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANP 157
            LSE      K   L + KA E ++LA+P
Sbjct: 126 -LSETVRDQAKFKGLGLFKAIEGYVLAHP 153

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score =  123 bits (311), Expect = 1e-37
 Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 2/142 (1%)

Query: 9   EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
           E  S +A  +L+KAL  D+   + + +   I SI+L+EG+GGVGTIKK    E  K   +
Sbjct: 8   ETSSSVAPAKLYKALTKDSDT-IAQKIDGPIQSIELVEGNGGVGTIKKITANEGDK-TSF 65

Query: 69  VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
           V  +V+ +D  N  + YSIV G  L   +     +    + S G   +K+ +++ + GD+
Sbjct: 66  VLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDA 125

Query: 129 LLSEEDVRNIKQGILTMVKAAE 150
            LS+    +         KA E
Sbjct: 126 PLSDAVRDDALAKGAGFFKAIE 147

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.9 bits (148), Expect = 3e-13
 Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 5/89 (5%)

Query: 67  RYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGD-CFAKLKIEYESL 125
           +  K  +E +D         +    I      +    +  T    GD         +E +
Sbjct: 34  KNGKTEIEAVDLVKKTMTIQMSGSEIQK-YFKTLKGSIAVTPIGVGDGSHVVWTFHFEKV 92

Query: 126 GDSLLSEEDVRNIKQGILTMVKAAERFLL 154
              +       +I    +   K  +  +L
Sbjct: 93  HKDIDDPH---SIIDESVKYFKKLDEAIL 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1fm4a_	159	Major tree pollen allergen {European white birch (	100.0
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	100.0
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	100.0
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	100.0
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.95
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.93
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.67
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.66
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.65
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.46
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	99.25
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	99.18
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	99.09
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	99.08
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	99.03
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.76
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	98.65
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.61
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.32
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	98.25
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	98.15
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	98.13
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	97.92
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	97.9
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	97.67
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	97.3
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	96.41
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	96.2
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	85.89

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=100.00  E-value=2.6e-47  Score=285.42  Aligned_cols=159  Identities=36%  Similarity=0.611  Sum_probs=151.4

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            2 VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ++.+++.|+++++||+++|++|++|+++++|+|+|+++++|++++|||++||||.|+|..+ ++..++|||++.+|+++|
T Consensus         1 Gv~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~-~~~~~~Kerve~iD~~~~   79 (159)
T d1fm4a_           1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEG-FPFKYVKDRVDEVDHTNF   79 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTT-SSSSEEEEEEEEEETTTT
T ss_pred             CceEEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCC-CCceEEEEEEEEEccccc
Confidence            5789999999999999999997789999889999999999999999999999999999988 667899999999999999


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhhh
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC  161 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~~  161 (164)
                      +++|+++||+.+..+|++|+++++|+|.++|+|+++|+++|++.++..++|+.++.+.+.+.+|+|++|+||+||||+||
T Consensus        80 ~~~y~viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~eYe~~~~~~~~~e~~k~~ke~~~~~~K~iE~YLlanp~~y~  159 (159)
T d1fm4a_          80 KYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN  159 (159)
T ss_dssp             EEEEEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCTTTTHHHHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred             EEEEEEEeccccccceEEEEEEEEEecCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChhhcC
Confidence            99999999998778999999999999999999999999999999999999988888889999999999999999999997

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=100.00  E-value=6.3e-47  Score=283.26  Aligned_cols=159  Identities=33%  Similarity=0.564  Sum_probs=151.9

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            2 VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ++.+++.|+++++||+++|++|++|+++++|+++|+.+++|++++|||++||||.|+|.+| ++..++||||+.+|+++|
T Consensus         1 gv~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~-~~~~~~KErie~iD~~~~   79 (159)
T d1e09a_           1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEG-SQYGYVKHKIDSIDKENY   79 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCS-SSCEEEEEEEEEEETTTT
T ss_pred             CceEEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCC-CCcEEEEEEEEEEccccc
Confidence            5789999999999999999997789999889999999999999999999999999999988 778899999999999999


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhhh
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC  161 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~~  161 (164)
                      +++|+++||+.+...|++|+.++++.|.+++||+++|+++|++.++..++|+..+.+.+.+.+|+|+||+||+|||++||
T Consensus        80 ~~~y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~~~~~~~~e~~~~~~e~~~~~~K~iEayLlanp~~y~  159 (159)
T d1e09a_          80 SYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN  159 (159)
T ss_dssp             EEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred             EEEEEEEecccccccEEEEEEEEEEccCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChhhcC
Confidence            99999999998878899999999999999889999999999999999999998888889999999999999999999997

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=4.4e-46  Score=277.82  Aligned_cols=157  Identities=34%  Similarity=0.492  Sum_probs=148.9

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            2 VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ++.+++.|+++++||+|+|++++.|+++++|++ |+.|++|+++||||++||||.|+|..| ++.+++|||++.+|++++
T Consensus         1 gv~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~-p~~i~s~e~~eGdG~~GsIr~~~~~~g-~~~~~~Kerie~vD~e~~   78 (157)
T d1xdfa1           1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKA-VEAIQSIETVEGNGGPGTIKKLTLIEG-GETKYVLHKIEAVDEANL   78 (157)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHHSHHHHHHHH-CTTEEEEEEEESSSSTTCEEEEEEEET-TEEEEEEEEEEEEEGGGT
T ss_pred             CceEEEEEEeccCCHHHHHHHHhhchhhccccc-hhheecceeecCCCCCCcEEEEEEcCC-CccEEEEEEEEEEechhc
Confidence            578999999999999999999878999888887 678999999999999999999999998 778899999999999999


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchhhh
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC  161 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~~  161 (164)
                      +++|+++||+.+...|++|+.+++++|.++|+|+++|+++|++.++..++|+.++.+.+.+.+|+|++|+||+|||| ||
T Consensus        79 ~~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~eYe~~~~~~~~~e~ik~~~e~~~~~~K~iEaYLlanpd-y~  157 (157)
T d1xdfa1          79 RYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE-YN  157 (157)
T ss_dssp             EEEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEEEEEESSSSCCCHHHHHHHHHHHHTTTHHHHHHHHTSGG-GC
T ss_pred             EEEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC
Confidence            99999999998878899999999999999999999999999999999999998888889999999999999999999 86

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=100.00  E-value=6.8e-44  Score=265.08  Aligned_cols=153  Identities=26%  Similarity=0.491  Sum_probs=145.5

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            2 VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ++.+++.|+++++||+++|++|+.|+++++|+++|+++++|++ +|||++||||.|+|..+ ++..++|||++.+|++++
T Consensus         1 gv~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~svev-eGdG~~GsIr~~~~~~~-~~~~~~Kerve~iD~~~~   78 (153)
T d2bk0a1           1 GVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPDG-GPITTMTLRIDGVNKEAL   78 (153)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEEE-ESSSSTTCEEEEECCTT-SSCCEEEEEEEEEETTTT
T ss_pred             CceEEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEEE-ECCCCCCeEEEEEEecC-ccceeeEEEEEEEecCcc
Confidence            5789999999999999999998789998889999999999995 99999999999999988 678899999999999999


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      +++|+++||+.+...|++|+.+++++|.++|+|+++|+++|++.++..++|+.++...+.+.+|+|+||+||+||
T Consensus        79 ~~~y~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~~~~~~~~e~~k~~~e~~~~~~K~iE~YLlan  153 (153)
T d2bk0a1          79 TFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN  153 (153)
T ss_dssp             EEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999987788999999999999999999999999999999999999998888899999999999999997

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=2.2e-43  Score=262.70  Aligned_cols=155  Identities=29%  Similarity=0.469  Sum_probs=144.8

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            2 VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ++.+++.|+++++||+++|++++.|+++++|+++|+ |++++++||||++||||.|+|..| ++...+|||++.+|++++
T Consensus         1 Gv~t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~~-i~s~e~~eGdGg~GsIk~~~~~~~-~~~~~~Kerie~iD~en~   78 (155)
T d1icxa_           1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIHD-GHTSFVLHKLDAIDEANL   78 (155)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTT-EEEEEEEESSSSTTCEEEEEEESS-SSEEEEEEEEEEEEGGGT
T ss_pred             CceEEEEeEEecCCHHHHhhhheeccchhchhhhhh-eeeeeEecCCCccceEEEEEeccC-CceEEEEEEEEEEccccc
Confidence            578999999999999999999888999988999986 899999999999999999999998 678899999999999999


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQC  159 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~  159 (164)
                      +++|+++||+.+...|++|+.++++.|.++|+|+++|+++|++.++. .+++..+.+.+.+.+|||++|+||+||||.
T Consensus        79 ~~~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~eYe~~g~~-~~e~~~~~~ke~~~~~fK~iE~YLlanPd~  155 (155)
T d1icxa_          79 TYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPDY  155 (155)
T ss_dssp             EEEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSS-CCHHHHTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCC-CChhhHHHHHHHHHHHHHHHHHHHhhCcCC
Confidence            99999999998878999999999999999999999999999999775 666667778899999999999999999984

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=100.00  E-value=5.1e-40  Score=242.72  Aligned_cols=147  Identities=29%  Similarity=0.419  Sum_probs=138.3

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            2 VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ++.+++.|+++++||+++|++++.||++ +|+++|+.|++|++++|||++||||.|+|.+| ++..++||||+.+|+++|
T Consensus         1 gv~~~~~E~~~~v~a~k~~ka~~~d~~~-l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g-~~~~~~kErl~~iD~~~~   78 (147)
T d1txca1           1 GVFVFRDETSSSVAPAKLYKALTKDSDT-IAQKIDGPIQSIELVEGNGGVGTIKKITANEG-DKTSFVLQKVDAIDEANL   78 (147)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHTTHHH-HHHHTTSSEEEEEEEESSSSTTCEEEEEEEET-TEEEEEEEEEEEEEGGGT
T ss_pred             CceEEEEEEeccCCHHHHHHhhhccccc-CccccccccccceeecCCCCcceEEEEEEcCC-CcceEEEEEEEEEccCCc
Confidence            5789999999999999999987889997 78888999999999999999999999999998 667899999999999999


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHH
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAE  150 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie  150 (164)
                      +++|+++||+.+..+|++|..++++.|.++|+|+++|+++|++.++..++++.++.+++.+.+|||++|
T Consensus        79 ~~~y~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~~~~~~~~ee~~k~~k~~~~~~~KavE  147 (147)
T d1txca1          79 GYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIE  147 (147)
T ss_dssp             EEEEEEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEccCccccceEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHhhhheecC
Confidence            999999999987789999999999999999999999999999999888888888888999999999997

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.95  E-value=5.1e-26  Score=164.18  Aligned_cols=133  Identities=17%  Similarity=0.341  Sum_probs=112.3

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +.+.+++|++||++||+++ +||++ +|+|+|. +.+|+..+    .|++|.+++.+|    ..+.|||+.+|+.+|+++
T Consensus         3 ~~~~si~I~A~pe~VW~~v-~df~~-~~~W~p~-v~~~~~~~----~G~~R~~~~~~g----~~~~E~l~~~d~~~~~~~   71 (138)
T d3cnwa1           3 HTTTSMEIFGSPEQVWQLI-GGFNS-LPDWLPY-IPSSKLTE----GGRVRHLANPDG----DTIIERLEVFNDKERYYT   71 (138)
T ss_dssp             EEEEEEEESSCHHHHHHHH-CCTTC-GGGTCTT-CSEEEEEG----GGTEEEEECTTC----CEEEEEEEEEETTTTEEE
T ss_pred             cEEEEEEEeCCHHHHHHHH-hCccc-hHHHhcc-cceeEeec----CceeEEEEecCC----ceeEEEEEEEeCCCcEEE
Confidence            4778899999999999996 89997 8999996 88998743    289999999877    479999999999999999


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCC-ceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHHh
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDG-DCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg-~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l~  154 (164)
                      |++++++.   |+++|.++++|.|.++| +|.++|+.+|++.+   ..++.. +.+...+.+++++|+++++
T Consensus        72 y~~~~~~~---p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~~---~~~~~~~~~~~~~~~~~l~~L~~~f~  137 (138)
T d3cnwa1          72 YSIMNAPF---PVTNYLSTIQVKEGTESNTSLVEWSGTFTPVE---VSDEEAINLFHGIYSDGLKALQQAFL  137 (138)
T ss_dssp             EEEEECSS---SEEEEEEEEEEEECSSTTCEEEEEEEEEEESS---SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCC---cceeeEEEEEEEECCCCCeEEEEEEEEEecCC---CCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999876   79999999999999875 69999999999875   445545 3455567788888887654

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=3.6e-25  Score=157.18  Aligned_cols=116  Identities=9%  Similarity=0.176  Sum_probs=102.0

Q ss_pred             ccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            2 VLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         2 ~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      ..++++.+++|++||+++|+++ .+.+                 +|++            +    ...|||++.+|++++
T Consensus         3 l~gkl~~eveik~~a~kf~~~~-~~~~-----------------~~~~------------~----~~~KerVe~vD~en~   48 (120)
T d1vjha_           3 LKGALSVKFDVKCPADKFFSAF-VEDT-----------------NRPF------------E----KNGKTEIEAVDLVKK   48 (120)
T ss_dssp             SEEEEEEEEEESSCHHHHHHHH-HHHT-----------------TSCS------------S----TTCEEEEEEEETTTT
T ss_pred             cceEEEEEEEecCCHHHHHHHh-hhcc-----------------CCCC------------C----cccEEEEEEEcCCCC
Confidence            3689999999999999999997 3433                 2332            0    135899999999999


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCC-ceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDG-DCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg-~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  155 (164)
                      +++|+++||+++ ..|++|.++++|+|.++| ||+++|+++|++.+++.++|+.+   ++++..|+|+||+||++
T Consensus        49 sity~vieGdvl-~~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p~~~---~e~~~~~~K~id~yLL~  119 (120)
T d1vjha_          49 TMTIQMSGSEIQ-KYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSI---IDESVKYFKKLDEAILN  119 (120)
T ss_dssp             EEEEEEECTTGG-GTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHH---HHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeeccc-cceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCHHHH---HHHHHHHHHHHHHHHhc
Confidence            999999999976 789999999999999887 89999999999999999999877   78999999999999986

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=7.9e-15  Score=104.24  Aligned_cols=140  Identities=19%  Similarity=0.260  Sum_probs=103.2

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      .++.++.|++|+++||+++ .|+.+ +|+|+|+ ++++++++++|. +....+++... +....+..+++ .++..+.+.
T Consensus         2 ~v~~~~~I~ap~~~V~~~l-~D~~~-~~~w~p~-~~~~~il~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~i~   75 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRLA-KDLEG-LKPYLKE-VESLEVVAREGA-RTRSRWVAVAM-GKKVRWLEEEE-WDDENLRNR   75 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHH-HCHHH-HGGGCTT-EEEEEEEEEETT-EEEEEEEEEET-TEEEEEEEEEE-EETTTTEEE
T ss_pred             EEEEEEEECCCHHHHHHHH-HChhh-HHhhccc-cEEEEEEEecCC-cceEEEEEEee-eeeEEEEEEEE-EcCCCCEEE
Confidence            4789999999999999996 89997 8999997 889998866541 33334444433 22234566655 688899999


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC--CChHHH-HHHHHHHHHHHHHHHHHHhhC
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL--LSEEDV-RNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      |++..|+     +..+.++++|+|.++ ||.+.|+++|+......  +..-.+ +.+++.+.+++.++++.+.+.
T Consensus        76 ~~~~~g~-----~~~~~g~w~l~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  144 (146)
T d2d4ra1          76 FFSPEGD-----FDRYEGTWVFLPEGE-GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA  144 (146)
T ss_dssp             EEEEEES-----CSEEEEEEEEEECSS-SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEccCC-----cceEEEEEEEEecCC-ceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9998875     467899999999976 69999999999764211  112222 346778888888888877653

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.66  E-value=8.5e-15  Score=104.78  Aligned_cols=143  Identities=11%  Similarity=0.126  Sum_probs=100.2

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCC-CcccEEEEEeecCCcceeEEEEEEEEeeCCCcE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDG-GVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg-~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~   82 (164)
                      .+.+.++.|+||+++||+++ .|+.+ +|+|+|+ +.++++++.++ +.+....+....+ +.......+++ .+...+.
T Consensus         3 ~~~e~si~I~Ap~~~Vw~~l-~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~   77 (155)
T d2rera1           3 ARTDNSIVVNAPFELVWDVT-NDIEA-WPELFSE-YAEAEILRQDGDGFDFRLKTRPDAN-GRVWEWVSHRV-PDKGSRT   77 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-TCGGG-HHHHCSS-EEEEEEEECCSSCEEEEEEECCCTT-SCCCEEEEEEE-EEGGGTE
T ss_pred             CEEEEEEEECCCHHHHHHHH-HChhh-Hhhhhhh-ceEEEEeecCCCceEEEEEEEEeee-eeeEEEEEEEE-EcCCccE
Confidence            45699999999999999996 89997 9999997 77888876543 3333333333332 22233444444 7788888


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHHhhC
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      +.|....++    +...+.++++|+|.++ ||.+.|+.+|+..+......... +.+...+..++.+|.+++-+.
T Consensus        78 ~~~~~~~~~----~~~~~~~~w~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~  147 (155)
T d2rera1          78 VRAHRVETG----PFAYMNLHWTYRAVAG-GTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDR  147 (155)
T ss_dssp             EEEEESSCT----TEEEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeecCc----cceeeEEEEEEeecCC-ccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            877775443    5789999999999975 79999999999887655443333 345556666777777666543

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.65  E-value=6.8e-15  Score=103.54  Aligned_cols=133  Identities=11%  Similarity=0.105  Sum_probs=98.8

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      .++.++.|+||+|+||+++ .|+.+ +|+|+|. +.+++. +++.++|+...+++..+ +   .+..+++.+++.. +++
T Consensus         2 ~~s~si~I~Ap~e~Vw~~~-~d~~~-~~~W~~~-~~~~~~-~~~~~~G~~~~~~~~~~-~---~~~~~v~~~~p~~-~~~   72 (137)
T d2b79a1           2 KFSFELAVNTKKEDAWTYY-SQVNQ-WFVWEGD-LEQISL-EGEFTTGQKGKMKMEDM-P---ELAFTLVEVRENQ-CFS   72 (137)
T ss_dssp             EEEEEEEESSCHHHHHHHH-HCGGG-GGGTSTT-EEEEEE-SSSSSTTCEEEEEETTS-C---CEEEEECCCBTTT-EEE
T ss_pred             ceEEEEEEcCCHHHHHHHH-hhhhh-CccccCc-ccceee-cccccceEEEEEEEcCC-c---ceeeeeecccCCc-EEE
Confidence            5789999999999999996 89997 9999996 888886 56667899888888655 3   4667888776654 688


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH-HHHHHHHHHHHHHHHHHH
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV-RNIKQGILTMVKAAERFL  153 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~ie~~l  153 (164)
                      |+...      +...+.+.+.+++.++|+|+++|+.+|....... ....+ +.+.+.+...+++|.+.+
T Consensus        73 ~~~~~------~~~~~~~~~~~~~~~~g~t~vt~~~~~~g~~~~~-~~~~~~~~v~~~~~~~l~~LK~~~  135 (137)
T d2b79a1          73 DLTAT------PFGNVLFEHEILENPDGTISLRHSVSLTDSDTTE-EALAFLKQIFADVPESVGKLKQIL  135 (137)
T ss_dssp             EEEEE------TTEEEEEEEEEEECTTSCEEEEEEEEECSCSCCT-THHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             EEecc------cceeeeeEEEEccCCCCcEEEEEEEecccccchH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            86522      3457788899999998899999999997443222 22222 334556667777776655

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.46  E-value=5.5e-12  Score=87.96  Aligned_cols=141  Identities=12%  Similarity=0.131  Sum_probs=87.9

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      .+++++++|++|+++||+++ .|+.+ +|.|+|+ +++++...+.  .+.......... .............++.....
T Consensus         3 ~k~e~si~I~ap~e~Vw~~l-~D~~~-~~~w~p~-~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   76 (147)
T d2ns9a1           3 VRYEGSFEVSKTPEEVFEFL-TDPKR-FSRAFPG-FKSVEVEDGS--FTIELRLSLGPL-RGDARVRASFEDLEKPSKAT   76 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-TCHHH-HGGGSTT-EEEEEEETTE--EEEEEEEESSSS-EEEEEEEEEEEEEETTTEEE
T ss_pred             EEEEEEEEEcCCHHHHHHHH-hCHhh-hhhcccc-hhheeecccc--cceeEEEEEEEE-eeEeeeeeeeeeecCCccee
Confidence            47899999999999999996 89997 9999997 8887763322  222222222211 11122334444444544433


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCC-CCCChHHHH-HHHHHHHHHHHHHHHHHh
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGD-SLLSEEDVR-NIKQGILTMVKAAERFLL  154 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~k~ie~~l~  154 (164)
                       +.......  ....++.+++.++|.++ +|.++|+.+++..+- ..+....++ .+++.+..+++.|.+.|-
T Consensus        77 -~~~~~~~~--~~~~~~~~~~~l~~~~~-gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~  145 (147)
T d2ns9a1          77 -VKGSGRGA--GSTLDFTLRFAVEPSGG-GSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELG  145 (147)
T ss_dssp             -EEEEEECS--SEEEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -EEEeeecc--ccceeeEEEEEEEecCC-CcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             33333332  25678899999999865 699999999988752 222222232 245566666666666553

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=99.25  E-value=5e-10  Score=78.68  Aligned_cols=142  Identities=14%  Similarity=0.109  Sum_probs=87.5

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      .++.+++|++|+++||+++ .|+.+ +|+++|+ +++++.++.+...+.++ +.+..-...+ ..+.++...+...+. .
T Consensus         2 n~s~~~~i~~~~e~v~~~l-~D~~~-~~~~~Pg-~~~~~~~~~~~~~~~~~-~~~g~~~~~~-~~~~~~~~~~~~~~~-~   75 (147)
T d2pcsa1           2 NGNGSIELKGTVEEVWSKL-MDPSI-LSKCIMG-CKSLELIGEDKYKADLQ-IGIAAVKGKY-DAIIEVTDIKPPYHY-K   75 (147)
T ss_dssp             EEEEEEEEESCHHHHHHHH-TCHHH-HHHHSTT-EEEEEEEETTEEEEEEE-ECCGGGCEEE-EEEEEEEEEETTTEE-E
T ss_pred             CCCceEEeCCCHHHHHHHH-cCHHH-HHhhCcc-hhhceecCCCEEEEEEE-Eeecceeeee-EEEEEEeccCcccce-e
Confidence            4678999999999999996 89996 9999998 78888775432222222 3332221222 245556656666553 2


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCC-CChHHHH-HHHHHHHHHHHHHHHHHh
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSL-LSEEDVR-NIKQGILTMVKAAERFLL  154 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~k~ie~~l~  154 (164)
                      ........  .......+.+.+.+.++++|.++|+++|+..+... .....++ .+.+.+..+++++++.|.
T Consensus        76 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~g~l~~l~~~li~~~~~~~~~~f~~~~~~~l~  145 (147)
T d2pcsa1          76 LLVNGEGG--PGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIA  145 (147)
T ss_dssp             EEEEEEET--TEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Eeeccccc--cchhcceeEEeeecccCCcEEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33322222  25566777888888888899999999999865211 1222222 233344555555555543

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.18  E-value=3.6e-10  Score=79.86  Aligned_cols=127  Identities=12%  Similarity=0.074  Sum_probs=83.8

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      +...+++|++|+++||+.+ .|+.+ +|+|+|+ +.+++..+|+      +.+......|   .++-+++ -|...+.+.
T Consensus         6 ~~~~~i~I~~p~~~v~~~~-~d~~~-~p~w~~~-l~~~~~~~~~------~~~~~~~~~G---~~~~~i~-~~~p~~~i~   72 (133)
T d2qpva1           6 SRIIHLSVEKPWAEVYDFA-ANPGN-MPRWAAG-LAGGLEADGE------DWIAKGGPLG---EVRVNFA-PHNEFGVID   72 (133)
T ss_dssp             EEEEEEEESSCHHHHHHHH-HCGGG-GGGTCGG-GTTCCEEETT------EEEEECSSSC---EEEEEEC-CCCSSCBCC
T ss_pred             EEEEEEEECCCHHHHHHHH-hChhh-cchhhhc-cceeEEecCC------cEEEEecCCC---cEEEEEE-EcCCCCEEE
Confidence            4556789999999999996 89997 9999997 7777665442      2344432212   4666777 478888899


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~  154 (164)
                      |+...++.     ..-..++++.|.++ +|.+.|+. |.+.+   ..++......+.+..-+++|.++|-
T Consensus        73 w~~~~~~~-----~~g~v~fr~~~~g~-gt~v~~~~-~~ppg---~~~~~~~~~~~~v~~dL~rlK~l~E  132 (133)
T d2qpva1          73 HVVTLPDG-----LKVYNALRVTPNGS-GTEVSFTL-LRLEG---MTDEDFEQDASAITADLEMLKSLLE  132 (133)
T ss_dssp             EEEECTTS-----CEEEEEEEEEEETT-EEEEEEEE-ECCTT---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCC-----CEEEEEEEEccCCC-eEEEEEEE-EeCCC---CchHHHHHHHHHHHHHHHHHHHHhc
Confidence            99887753     12334667776654 58887776 44433   3444444445556666677666653

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.09  E-value=1.4e-09  Score=77.49  Aligned_cols=112  Identities=17%  Similarity=0.200  Sum_probs=77.4

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCC-CCcccEEEEEeecCC-cceeEEEEEEEEeeCCCcE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGD-GGVGTIKKFNFTEAV-KEFRYVKDRVEIMDNENHV   82 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGd-g~~G~vR~~~~~~g~-~~~~~~kErl~~~D~~~~~   82 (164)
                      .+..+..|++||+++|+++ .|+.+ +|+|+|. .+++++++.. .+-+......+..+. +....+..+.. .+..++.
T Consensus         3 ~~~~~~vi~~~~e~vf~vV-~Dve~-Yp~FlP~-c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   78 (148)
T d1t17a_           3 RHVVTKVLPYTPDQLFELV-GDVDA-YPKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVR-RDKDARS   78 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHH-TTTTC-CSSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEE-EETTTCE
T ss_pred             cceEEEEeCCCHHHHHHHH-HHHHh-hhhhccc-cCccEEEecccccccceeeEEEEEEeeeeEEEEEEEee-ecCCceE
Confidence            4567779999999999995 89997 9999996 7777766542 111223333333221 22233444444 6677777


Q ss_pred             EEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051           83 FRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG  126 (164)
Q Consensus        83 ~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~  126 (164)
                      +.....+|     +++...+.+++.|.++ +|.|+|.++|+...
T Consensus        79 ~~~~~~~g-----~f~~l~~~W~f~~~~~-~T~V~~~l~fe~~~  116 (148)
T d1t17a_          79 IDVSLLYG-----PFKRLNNGWRFMPEGD-ATRVEFVIEFAFKS  116 (148)
T ss_dssp             EEEEESST-----TSSCEEEEEEEEEETT-EEEEEEEEEECCSC
T ss_pred             EEEeccCc-----hhhhcccceeeccCCC-ceEEEEEEEEEECC
Confidence            76666544     5688999999999876 69999999999764

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=99.08  E-value=4.2e-09  Score=75.77  Aligned_cols=147  Identities=9%  Similarity=0.000  Sum_probs=93.1

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      ..+..+.+|+||+++||+++ .|+.. +++|++.---++...+.+..+|....+.+....+....+.-++..+++.++ +
T Consensus        12 ~~i~i~r~i~Ap~e~Vw~a~-tdpe~-l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~~~~~g~v~~i~~~~r-l   88 (163)
T d1xuva_          12 QEIIITREFDAPRELVFKAF-TDPDL-YTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPER-I   88 (163)
T ss_dssp             SEEEEEEEESSCHHHHHHHH-HCHHH-HTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTTE-E
T ss_pred             ceEEEEEEeCCCHHHHHHHH-cChHH-hhhccCCCCccceeeeeeceeCceEEEEEEecCCCceEEEEEEEEecCCCE-E
Confidence            35778889999999999997 79995 888864222234444555445554454444221333457888888998876 7


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHHhhCc
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFLLANP  157 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l~~~~  157 (164)
                      +|+.--++.. .+-.....++.+++.++|+|++.++..|....   ..+.... ...++...++.+|++||.+..
T Consensus        89 ~~tw~~~~~~-~~~~~~~v~~~~e~~~~g~t~~~~~~~~~~~~---~~~~~~~~g~~~GW~~~L~~L~~~le~~~  159 (163)
T d1xuva_          89 ISTFEFEGLP-EKGHVILDTARFEALPGDRTKLTSHSVFQTIE---DRDGMLQSGMEEGINDSYERLDELLEKMK  159 (163)
T ss_dssp             EEEEEETTSS-SSCCCEEEEEEEEEETTTEEEEEEEEECSSHH---HHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCC-CCCCcEEEEEEEEEeCCCcEEEEEEEcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6765323211 23345678899999988888888876653221   0011111 135567788999999987643

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.03  E-value=3.7e-08  Score=70.77  Aligned_cols=148  Identities=11%  Similarity=0.041  Sum_probs=93.0

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      ..++.+..+++|+++||+++ .|+.. +.+|.+..--.+...+.+-.+|..-.+.+....+....+.-++..+++..+ +
T Consensus         7 ~~i~ier~i~Ap~e~Vw~a~-tdpe~-l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~v~e~~p~~~-i   83 (164)
T d2il5a1           7 VEVEIEKLYKFSPELVYEAW-TKKDL-LKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEY-V   83 (164)
T ss_dssp             EEEEEEEEESSCHHHHHHHT-TCHHH-HTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETTTE-E
T ss_pred             EEEEEEEEECCCHHHHHHHH-cCHHH-HhCcccCCCccceEEEeecccCceEEEEEecCCcceEEEEEEEEEEcCCCE-E
Confidence            35677889999999999997 79995 788754211123333455445554444444221333356778888888766 6


Q ss_pred             EEEEE-eccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHH--------HHHHHHHHHHHHHHHHHHh
Q 047051           84 RYSIV-EGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDV--------RNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        84 ~Y~i~-eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~k~ie~~l~  154 (164)
                      .|+.- ++.    +-.....++.+.+..+|+|.+.++.+..+...........        ..+.+....+|.+|++||-
T Consensus        84 ~~t~~~~~~----~~~~~~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~lE  159 (164)
T d2il5a1          84 KMTIGMPGL----SETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIE  159 (164)
T ss_dssp             EEEESCC------CCCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCC----CCCceEEEEEEEEcCCCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66641 222    1223445667777777899999999988875443332211        2244667888899999987


Q ss_pred             hCch
Q 047051          155 ANPQ  158 (164)
Q Consensus       155 ~~~~  158 (164)
                      +.++
T Consensus       160 ~g~~  163 (164)
T d2il5a1         160 TSTQ  163 (164)
T ss_dssp             TTSC
T ss_pred             ccCC
Confidence            7654

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.76  E-value=7e-07  Score=62.26  Aligned_cols=139  Identities=18%  Similarity=0.130  Sum_probs=85.0

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee--cCCcceeEEEEEEEEeeCCCc
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT--EAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~--~g~~~~~~~kErl~~~D~~~~   81 (164)
                      .++..+..|++|+++||+++ .|... +.+|++.---.+...+++-.+|..-.+.+.  ++ +..-.+.=++..+++.++
T Consensus         2 ~ti~~~r~i~ap~e~Vw~a~-Tdp~~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~-g~~~~~~g~v~~~~p~~~   78 (143)
T d1z94a1           2 NTIRLHRVLSAPPERVYRAF-LDPLA-LAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFAS-GQKHAFGGRYLELVPGER   78 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHHT-TCHHH-HHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTT-CCEEEEEEEEEEEETTTE
T ss_pred             cEEEEEEEECCCHHHHHHHh-cCHHH-HhhhhCCCCccceeEeeccccceeEEEEEeeCCC-CcEEEEEEEEEEecCCeE
Confidence            46777889999999999997 79994 778764222233334555444544334433  22 333345667888888877


Q ss_pred             EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 047051           82 VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLA  155 (164)
Q Consensus        82 ~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~  155 (164)
                       +.|+-...+..  .-.....++.|.+.++ +|.+..+.+  ...+.    +...........++..|++||-+
T Consensus        79 -i~~t~~~~~~~--~~~~~~v~~~l~~~~~-gT~lt~~~~--~~~~~----~~~~~~~~GW~~~l~~L~~~lE~  142 (143)
T d1z94a1          79 -IRYTDRFDDAG--LPGDMITTITLAPLSC-GADLSIVQE--GIPDA----IPPENCYLGWQQSLKQLAALVEP  142 (143)
T ss_dssp             -EEEEEEESCCC-----CEEEEEEEEEETT-EEEEEEEEE--CCCTT----SCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             -EEEEEeccCCC--CCCcEEEEEEEEEcCC-CEEEEEEEE--cCCCh----hHHHHHHHHHHHHHHHHHHHHcC
Confidence             67775433321  1134567888999876 587766543  22211    11223466778888999988864

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.65  E-value=1.7e-06  Score=60.10  Aligned_cols=137  Identities=9%  Similarity=-0.044  Sum_probs=79.7

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccC-cceeeEEEec--CCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCc
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALP-QVISSIDLLE--GDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENH   81 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P-~~v~s~e~~e--Gdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~   81 (164)
                      .+..+..+++|+++||+++ .|... +.+|++ +.. .+...+  .+-.+|---.+.+....+....+.-++..+++.++
T Consensus         2 el~i~r~i~a~~e~Vw~a~-tdp~~-l~~W~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~~g~~~~~~g~v~~~~p~~r   78 (143)
T d3elia1           2 DLRLEREFAVAPEALFAWV-SDGAK-LLQWWGPEGL-HVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQS   78 (143)
T ss_dssp             EEEEEEEESSCHHHHHHHT-TCHHH-HHHHCSSTTC-BCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTTE
T ss_pred             eEEEEEEECCCHHHHHHHh-cCHHH-HhhhcCCCCc-eeeeeeEEEeeccCccEEEEEECCCCcEEEEEEEEEEcCCCCE
Confidence            3567779999999999997 79995 777763 211 111111  12233333333333221233346668888888865


Q ss_pred             EEEEE--EEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 047051           82 VFRYS--IVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLL  154 (164)
Q Consensus        82 ~~~Y~--i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~  154 (164)
                       +.|+  ..+.+..  +-.....++.++|.++ +|.++++.+  .    .++.+........-..++..|++||.
T Consensus        79 -l~~t~~~~~~~~~--~~~~~~vt~~l~~~~~-gT~l~~~~~--~----~~~~~~~~~~~~GW~~~L~~L~~~lA  143 (143)
T d3elia1          79 -VGFTWGWHDDDDR--RGAESHVMFIVEPCAK-GARLILDHR--E----LGDDEMSLRHEEGWTSSLRKLAAELA  143 (143)
T ss_dssp             -EEEEEEEECTTSC--EEEEEEEEEECCBC---CEEEEEEEE--S----CSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEEeecCCCCC--CCCcEEEEEEEEEcCC-CEEEEEEEE--c----CCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence             5554  4433321  2233456778888765 588876643  1    13344445567788899999999873

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.61  E-value=5e-07  Score=64.71  Aligned_cols=144  Identities=13%  Similarity=0.057  Sum_probs=84.8

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCccccccccc-CcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKAL-PQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~-P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      .+..+..+++|+++||+++ .|+.. +.+|+ |.-. .+...++|-.+|..-.+.+....+......=++..+++.++ +
T Consensus         6 ~l~i~r~i~ap~e~Vw~a~-tdpe~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~ei~p~~r-l   81 (165)
T d1xfsa_           6 DLMLKRELAVPVNLVWRGL-TEPEL-LKKWFVPKPW-SISDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEKR-L   81 (165)
T ss_dssp             EEEEEEEESSCHHHHHHHH-HCHHH-HTTTSSCTTC-EEEEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEETTTE-E
T ss_pred             EEEEEEEEcCCHHHHHHHH-cCHHH-HhhcCCCCCc-cceeecccceeCceEEEEEECCCCceeeEEEEEEEecCCcE-E
Confidence            4677889999999999997 79995 77775 4323 22333455444444444443211232345667888888765 6


Q ss_pred             EEEE--Eecccc---------ccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH--HHHHHHHHHHHHH
Q 047051           84 RYSI--VEGGIL---------GFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN--IKQGILTMVKAAE  150 (164)
Q Consensus        84 ~Y~i--~eg~~~---------~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~ie  150 (164)
                      .|+-  .++...         ...-.....++.+++.++ +|.++++..+....    ..+...+  +.++-..++..|+
T Consensus        82 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-gT~lt~~~~~~~~~----~~~~~~~~g~~~GW~~~l~~L~  156 (165)
T d1xfsa_          82 IWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSS-GTRYTACAMHNTPG----QRKLHEEMGFHEGWGTTITQLE  156 (165)
T ss_dssp             EEESSEEGGGEECCC-----------CCEEEEEEEECSS-SEEEEEEEECSSHH----HHHHHHTTTHHHHHHHHHHHHH
T ss_pred             EEEEeecccccccccccccccCCCCccEEEEEEEEEcCC-cEEEEEEEEcCCHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            6652  211000         012233467888888765 69998876543221    1111111  4567789999999


Q ss_pred             HHHhhCc
Q 047051          151 RFLLANP  157 (164)
Q Consensus       151 ~~l~~~~  157 (164)
                      +||.+++
T Consensus       157 ~~le~~~  163 (165)
T d1xfsa_         157 ELLKQEK  163 (165)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9997764

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.32  E-value=1.1e-05  Score=55.63  Aligned_cols=96  Identities=8%  Similarity=0.139  Sum_probs=63.2

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      .++.++.|++|+++||+++ .|+.. +.+|++..       +.+-++|..  +.+..+.+   .+.=++..+++..+ +.
T Consensus         6 ~i~~~~~i~ap~e~Vw~al-t~p~~-~~~W~~~~-------~~~~~~g~~--~~~~~~~~---~~~g~v~~~~~~~~-l~   70 (138)
T d1xn5a_           6 DIKKEVRFNAPIEKVWEAV-STSEG-LAFWFMEN-------DLKAETGHH--FHLQSPFG---PSPCQVTDVERPIK-LS   70 (138)
T ss_dssp             CEEEEEEESSCHHHHHHHT-TSHHH-HHTTSCCB-------CCCSCTTCE--EEEECSSC---EEEEEEEEEETTTE-EE
T ss_pred             eEEEEEEECCCHHHHHHHH-cCHHH-hceEccCC-------cccccceee--EEecCCcc---ceeEEEEEEeCCcE-EE
Confidence            3788999999999999997 79994 88998752       111123433  33332212   34556777887764 88


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEE
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYES  124 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~  124 (164)
                      |+.-.+        ....+++++|.++ +|.+.++.+-..
T Consensus        71 ~~~~~~--------~~~v~~~l~~~~~-gT~lt~~~~g~~  101 (138)
T d1xn5a_          71 FTWDTD--------GWSVTFHLKEEEN-GTIFTIVHSGWK  101 (138)
T ss_dssp             EEETTT--------TEEEEEEEEECSS-SEEEEEEEECCC
T ss_pred             EEecCC--------CeEEEEEEEEcCC-cEEEEEEEecCC
Confidence            886211        2467888999764 798888765433

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=98.25  E-value=4.9e-06  Score=58.39  Aligned_cols=94  Identities=15%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEEE
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFR   84 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~~   84 (164)
                      .+..++.|++|+++||+++ .|+.. +.+|+++.  ..+.     .+|..  +++....+.   ..=++..+++.. ++.
T Consensus         9 ~i~~~~~i~ap~e~Vw~al-Tdp~~-l~~W~~~~--~~~~-----~~G~~--~~~~~~~g~---~~g~v~~~~p~~-~l~   73 (143)
T d1xn6a_           9 DIKQTIVFNASIQKVWSVV-STAEG-IASWFMPN--DFVL-----EVGHE--FHVQSPFGP---SPCKVLEIDEPN-HLS   73 (143)
T ss_dssp             CEEEEEEESSCHHHHHHTT-SCSHH-HHTTSCCB--CCCC-----CTTCE--ECBCCTTCC---CCEEEEEEETTT-EEE
T ss_pred             eEEEEEEECCCHHHHHHHh-cChHH-hceEeecc--Cccc-----ccCce--EEEeccccc---eeEEEEEEeCCc-EEE
Confidence            4789999999999999997 89995 88888641  1111     22322  333321011   233566787765 488


Q ss_pred             EEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEE
Q 047051           85 YSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIE  121 (164)
Q Consensus        85 Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~  121 (164)
                      |+--.+        ....++.+++.++|+|+++.+-.
T Consensus        74 ~tw~~~--------~~~v~~~l~~~~~G~T~l~l~h~  102 (143)
T d1xn6a_          74 FSWDTD--------GWVVSFDLKDLGDNKTEFTLIHG  102 (143)
T ss_dssp             EEETTT--------TEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEcCC--------CcEEEEEEEEcCCCcEEEEEEEe
Confidence            886211        24578889998888899987655

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=98.15  E-value=5.7e-07  Score=63.74  Aligned_cols=135  Identities=10%  Similarity=0.060  Sum_probs=74.7

Q ss_pred             EEEEEEecCCHHHHHHHHhcCcccccccccCcc-----eeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCC
Q 047051            6 IVGEYKSPIAVERLWKALICDAHNFMPKALPQV-----ISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         6 ~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~-----v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~   80 (164)
                      +.+++.|+||+++||++| .|  . +++|.|..     +.++.+..+.|  |.. .+...+| .  ..+.=++..+++.+
T Consensus         6 v~~~~~i~Ap~e~Vf~a~-te--~-~~~Ww~~~~~~~~~~~~~~~~~~g--G~~-~~~~~dG-~--~~~~g~v~ei~p~~   75 (155)
T d1zxfa1           6 VRHSVTVKADRKTAFKTF-LE--G-FPEWWPNNFRTTKVGAPLGVDKKG--GRW-YEIDEQG-E--EHTFGLIRKVDEPD   75 (155)
T ss_dssp             EEEEEEESSHHHHHHHHH-TT--C-SSSSSSGGGSTTTTCSSCEEETTT--TEE-ECCCTTT-S--CCCCEEEEEEETTT
T ss_pred             EEEEEEEeCCHHHHHHHH-Hh--h-hHhhcCCCCCCceEEEEEEeeCCC--ceE-EEEcccc-c--eeeeEEEEEEecCc
Confidence            678999999999999997 55  2 45665422     22222222222  433 2223333 1  12333677788877


Q ss_pred             cEEEEEEEecc-ccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH----HHHHHHHHHHHHHHHHhh
Q 047051           81 HVFRYSIVEGG-ILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN----IKQGILTMVKAAERFLLA  155 (164)
Q Consensus        81 ~~~~Y~i~eg~-~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~k~ie~~l~~  155 (164)
                      + +.|+---++ ....+-.....++.+++.++++|++..+-.--..    ..++....    +.+.-..+|..|.+||-+
T Consensus        76 r-l~~tw~~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~h~g~~~----~~~~~~~~~~~~~~~GW~~~L~~L~~~le~  150 (155)
T d1zxfa1          76 T-LVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDR----MGTKHAKRVRNGMDKGWPTILQSFQDKIDE  150 (155)
T ss_dssp             E-EEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSSTT----SCHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             E-EEEEEecCCccccccccceEEEEEEEecCCCCEEEEEEEeccCc----ccchhHHHHHhhhhhhHHHHHHHHHHHhhh
Confidence            5 777732222 1111222346788888888878887766431111    11221222    233567888888888865

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.13  E-value=2.4e-05  Score=56.24  Aligned_cols=124  Identities=8%  Similarity=0.064  Sum_probs=78.3

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCCcEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF   83 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~~~~   83 (164)
                      ..+..|..|++|+++||+++ .|+.. +.+|+|. ....++  ..|  |.+ .+.+.++     ...-++..+++.. ++
T Consensus        12 ~~f~~er~i~ap~e~Vw~Al-Tdpe~-l~~W~~~-~~~~d~--~~G--G~~-~~~~~~~-----~~~~~v~~~epp~-rL   77 (160)
T d2nn5a1          12 IYFGTERAISASPQTIWRYL-TETDK-LKQWFPE-LEIGEL--GVN--GFW-RFILPDF-----EETMPFTDYAEEK-YL   77 (160)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HCHHH-HHHHCTT-EEEEEC--STT--CEE-EEEETTE-----EEEEEEEEEETTT-EE
T ss_pred             EEEEEEEEecCCHHHHHHHH-cCHHH-HHhhCCC-CCcccc--cCC--Cee-EEEcCCC-----CcceEEEEEecCC-EE
Confidence            45677889999999999997 79995 8999985 222222  112  343 4445443     2445677788655 58


Q ss_pred             EEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC
Q 047051           84 RYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLAN  156 (164)
Q Consensus        84 ~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~  156 (164)
                      .|+-  +..        ..++.++|.++|+|++..+-......   .+.  ......+=..++..+.++|-..
T Consensus        78 ~~tW--~~~--------~v~~eL~~~~~~~t~l~l~~~~~~~~---~~~--~~~~~~GW~~~Ld~L~~~leg~  135 (160)
T d2nn5a1          78 GVTW--DTG--------IIYFDLKEQAPHQTLLVFSESLPENF---TTP--RHKDIAGWSIVLNRLKQVVETP  135 (160)
T ss_dssp             EEEE--TTE--------EEEEEEEEEETTEEEEEEEEEECTTC---SSC--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEe--cCc--------eEEEEEecCCCCeEEEEEEEecCccc---cch--hhhhHHHHHHHHHHHHHHHcCC
Confidence            8885  221        35788888877788888777653321   111  1111235677788888887543

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=5.4e-05  Score=52.32  Aligned_cols=126  Identities=11%  Similarity=0.106  Sum_probs=74.5

Q ss_pred             CccEEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEEeeCCC
Q 047051            1 MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         1 m~~~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~~D~~~   80 (164)
                      |-..++..+.++++|+++||+++ .|+. .+.+|..... .     .|-.+|..  +.+.++     .+.=++..+++.+
T Consensus         1 ~~T~~i~~~r~~~ap~e~Vw~a~-tdpe-~l~~W~~~~~-~-----~d~~~Gg~--f~~~~g-----~~~G~~~ev~p~~   65 (132)
T d1x53a1           1 IPTCKITLKETFLTSPEELYRVF-TTQE-LVQAFTHAPA-T-----LEADRGGK--FHMVDG-----NVSGEFTDLVPEK   65 (132)
T ss_dssp             CCEEEEEEEEEESSCHHHHHHHT-TCHH-HHHHHSCSCC-B-----CCCSTTCC--CBBTTT-----TEECCEEEEETTT
T ss_pred             CCceEEEEEEEECCCHHHHHHHH-cCHH-HHHhhhCCcc-c-----cccccCCE--EEEEec-----ceeEEEEEEeCCC
Confidence            55678899999999999999997 7998 4888874311 2     23222221  223333     1233456677766


Q ss_pred             c-EEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHH-HHHHHHHHH
Q 047051           81 H-VFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILT-MVKAAERFL  153 (164)
Q Consensus        81 ~-~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~ie~~l  153 (164)
                      + .++++.-+.+.   . ..-..++.+++.+ ++|.++.+.+.-+.       ++.+..++.-.. ++..|++++
T Consensus        66 rlv~tw~~~~~~~---~-~~s~vt~~l~~~~-~~T~l~l~~~g~p~-------~~~e~~~~GW~~~~~~~lk~~f  128 (132)
T d1x53a1          66 HIVMKWRFKSWPE---G-HFATITLTFIDKN-GETELCMEGRGIPA-------PEEERTRQGWQRYYFEGIKQTF  128 (132)
T ss_dssp             EEEEEEEETTSCT---T-CCEEEEEECCBCS-SCEEEEEEEEEEEH-------HHHHHHHHTTHHHHHHHHHHHT
T ss_pred             EEEEEEecCCCCC---C-CcEEEEEEEEECC-CcEEEEEEEECCCc-------chHHHHHhhHHHHHHHHHHHHc
Confidence            5 23444432221   1 1234678888875 57999999886543       223334444443 577777664

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=97.90  E-value=0.00011  Score=53.10  Aligned_cols=133  Identities=14%  Similarity=0.080  Sum_probs=80.8

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCC-------------cceeEEE
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAV-------------KEFRYVK   70 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~-------------~~~~~~k   70 (164)
                      .++..+..+++|+++||+++ .|+.. +.+|++..       +.+-.+|..-.+.+.++.             +....+.
T Consensus        19 ~~l~~er~~~Ap~e~VW~Al-Tdpe~-l~~W~~p~-------~~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (183)
T d2k5ga1          19 QSIRFERLLPGPIERVWAWL-ADADK-RARWLAGG-------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVAR   89 (183)
T ss_dssp             SSEEEEEEESSSSHHHHHHH-HCHHH-HTTTSCCC-------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEE
T ss_pred             ceEEEEEEeCCCHHHHHHHH-hChHH-HhhhcCCC-------CccccCCCEEEEEecCCCCcccccccccccCCCceeEE
Confidence            45778889999999999997 79995 88887531       112122332233332110             1112466


Q ss_pred             EEEEEeeCCCcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHH
Q 047051           71 DRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIKQGILTMVKAAE  150 (164)
Q Consensus        71 Erl~~~D~~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ie  150 (164)
                      =++..+++.++ +.|+...++..  +  .-..++.+++.++ +|+++.+..-.      .+.+......+.-..+|.+|.
T Consensus        90 g~v~~~~p~~r-l~~tw~~~~~~--~--~s~v~~~l~~~g~-gT~ltl~~~~~------~~~~~~~~~~~GW~~~L~~L~  157 (183)
T d2k5ga1          90 HTLLRCEPPRV-LALTWGGGAGE--A--PSEVLFELSEAGE-QVRLVLTHTRL------ADRAAMLDVAGGWHAHLAVLA  157 (183)
T ss_dssp             EEEEEEETTTE-EEEECCCCSSS--S--CCEEEEEEEECSS-SEEEEEEEECC------CSHHHHHHHTTTTTTHHHHHH
T ss_pred             EEEEEEeCCeE-EEEEeccCCCC--C--cEEEEEEEEEcCC-cEEEEEEEecC------CChhhHHHHhhhHHHHHHHHH
Confidence            67888987655 88887554432  2  2246788888875 68886654321      223333334455667888898


Q ss_pred             HHHhhCc
Q 047051          151 RFLLANP  157 (164)
Q Consensus       151 ~~l~~~~  157 (164)
                      +||-..+
T Consensus       158 ~~leg~~  164 (183)
T d2k5ga1         158 GKLAGQA  164 (183)
T ss_dssp             HHHHTSC
T ss_pred             HHHCCCC
Confidence            8887644

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.67  E-value=0.0025  Score=45.01  Aligned_cols=133  Identities=16%  Similarity=0.200  Sum_probs=78.4

Q ss_pred             EEEEEEEecCCH---------HHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecCCcceeEEEEEEEE
Q 047051            5 SIVGEYKSPIAV---------ERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEI   75 (164)
Q Consensus         5 ~~~~e~~i~apa---------~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g~~~~~~~kErl~~   75 (164)
                      .++|-++||-|.         +++|+-|+....+ -..+.|+ +.+|++++.++ -+-.|.++|+++     .++|++. 
T Consensus         2 ~feHlv~IN~p~~p~~p~LTr~QlW~GL~lrar~-p~~Fv~~-l~~c~v~~~~~-~~~~Rel~fg~~-----~v~e~Vt-   72 (151)
T d2ffsa1           2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRARE-PQYFVVG-LERFEILVDDG-DRLHRRLYLPGL-----VVEDEVV-   72 (151)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHC-GGGTCTT-CCEEEEEEECS-SEEEEEEEETTE-----EEEEEEE-
T ss_pred             cceEEEecCCCCCCCCCccCHHHHHHHHHHhhcC-Hhhcccc-cceEEEEEecC-CeEEEEEEECCc-----eeEEEEE-
Confidence            367778888764         5899998766654 2346674 99999987543 267899999655     7999988 


Q ss_pred             eeCCCcEEEEEEEeccccccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC-CCCC----ChHHHH-HHHHHHHHHHHHH
Q 047051           76 MDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG-DSLL----SEEDVR-NIKQGILTMVKAA  149 (164)
Q Consensus        76 ~D~~~~~~~Y~i~eg~~~~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~-~~~~----~~~~~~-~~~~~~~~~~k~i  149 (164)
                      +.+..+ +.|++......  .-.+  .++.++...+|.  +-.+..|+... +...    -.+..| +.+++....++.|
T Consensus        73 l~~~~~-v~f~~~a~~~~--~g~~--l~~~Ieep~~g~--L~lrf~Ye~~~p~~~~~~~~~~e~~ksaY~~ad~dTvr~I  145 (151)
T d2ffsa1          73 LKAPDS-AHYSIKPSAEV--AGGS--LDMTIEEPEPGS--LFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATI  145 (151)
T ss_dssp             EETTTE-EEEEECCCSSS--BEEE--EEEEEEEEETTE--EEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCcE-EEEEcccccCC--CCcE--EEEEEccCCCCe--EEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhHHHHHHH
Confidence            555555 57876543211  1223  334443333333  34445565422 1111    123233 2456667777777


Q ss_pred             HHHH
Q 047051          150 ERFL  153 (164)
Q Consensus       150 e~~l  153 (164)
                      -+|+
T Consensus       146 Re~~  149 (151)
T d2ffsa1         146 RDRF  149 (151)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7665

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.014  Score=41.69  Aligned_cols=145  Identities=10%  Similarity=-0.052  Sum_probs=86.7

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEee--cC--CcceeEEEEEEEEeeCC
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT--EA--VKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~--~g--~~~~~~~kErl~~~D~~   79 (164)
                      ..+..+..+++|++++++.+ .|... .++|.|. +.++++++..+.-..+-...+.  ..  ..+-..+--|...-++.
T Consensus        44 ~~~r~~~~i~~~~~~v~~~l-~d~~~-~~~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~~  120 (199)
T d1jssa_          44 YLYKAQGVMDDVVNNVIDHI-RPGPW-RLDWDRL-MTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEE  120 (199)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-SSSTT-HHHHCSS-EEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETT
T ss_pred             EEEEEEEEeCCCHHHHHHHH-hChhh-hhhcccc-hheEEEEEEcCCCcEEEEEEEcccCCCCcCCcEEEEEEEEEEcCC
Confidence            45788999999999999997 79985 8999995 8888988753211223222222  11  11222332333333444


Q ss_pred             CcEEEEEEEeccccccc---eeEEEEEEEEeeCCCC--ceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHHH
Q 047051           80 NHVFRYSIVEGGILGFK---VNSYVADVTFTSSSDG--DCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERFL  153 (164)
Q Consensus        80 ~~~~~Y~i~eg~~~~~~---~~~y~~ti~v~~~~dg--~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l  153 (164)
                      ...+........+...+   ...+.+.+.+.|.++|  +|.+.|....++.+.  +|.--+. .+......+++.+.++|
T Consensus       121 ~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~Lr~~l  198 (199)
T d1jssa_         121 GLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM--IPQSAVDTAMASTLANFYSDLRKGL  198 (199)
T ss_dssp             EEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC--CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            43333322222222112   2345577888998765  799999999998863  3332233 35566677778777765

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.088  Score=37.56  Aligned_cols=147  Identities=9%  Similarity=0.040  Sum_probs=88.2

Q ss_pred             EEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecC-CCCcccEEEEEeecC---CcceeEEEEEEEEeeCCC
Q 047051            5 SIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEG-DGGVGTIKKFNFTEA---VKEFRYVKDRVEIMDNEN   80 (164)
Q Consensus         5 ~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG-dg~~G~vR~~~~~~g---~~~~~~~kErl~~~D~~~   80 (164)
                      .+..+..+++|+++++..+..|... .++|.|. +.++++++- +..-..+..+.....   ..+-..+.-|-...+++.
T Consensus        53 ~~k~~~~i~~~~~~v~~~~~~d~e~-~~~Wd~~-~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~~  130 (214)
T d1em2a_          53 TFILKTFLPCPAELVYQEVILQPER-MVLWNKT-VTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDR  130 (214)
T ss_dssp             EEEEEEEESSCHHHHHHHTTTCHHH-HTTTCTT-EEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSE
T ss_pred             EEEEEEEEeCCHHHHHHHHHhChHH-HHHHHHH-HhheEEEEEcCCCceEEEEEecccCCCCCCCcEEEEEEEEEEcCCc
Confidence            4678889999999999744478885 8999995 778888874 211111222221111   112244555555556666


Q ss_pred             cEEEEEEEecccc--cc---ceeEEEEEEEEeeCCC--CceeEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHH
Q 047051           81 HVFRYSIVEGGIL--GF---KVNSYVADVTFTSSSD--GDCFAKLKIEYESLGDSLLSEEDVR-NIKQGILTMVKAAERF  152 (164)
Q Consensus        81 ~~~~Y~i~eg~~~--~~---~~~~y~~ti~v~~~~d--g~s~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~  152 (164)
                      ..+...-+.-+..  ..   -...+.+.+.++|.++  ++|.+.|....+|.+.  +|.--+. .+.+....+++.+.++
T Consensus       131 ~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~Lrk~  208 (214)
T d1em2a_         131 YLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR--LPRYLIHQSLAATMFEFAFHLRQR  208 (214)
T ss_dssp             EEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHhHHHHHHHHHHH
Confidence            5555444433211  11   1234556677777654  5799999999998873  3332233 2455677888888888


Q ss_pred             Hhh
Q 047051          153 LLA  155 (164)
Q Consensus       153 l~~  155 (164)
                      +.+
T Consensus       209 ~~k  211 (214)
T d1em2a_         209 ISE  211 (214)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.11  Score=36.65  Aligned_cols=144  Identities=13%  Similarity=0.019  Sum_probs=81.4

Q ss_pred             EEEEEEEEec-CCHHHHHHHHhcCcccccccccCcceeeEEEecCCCCcccEEEEEeecC--CcceeEEEE-EEEEeeCC
Q 047051            4 GSIVGEYKSP-IAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEA--VKEFRYVKD-RVEIMDNE   79 (164)
Q Consensus         4 ~~~~~e~~i~-apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eGdg~~G~vR~~~~~~g--~~~~~~~kE-rl~~~D~~   79 (164)
                      ..+..+..+. +|++.++.++ .|... .++|.|. +.++.....++.  .+-.+.+..-  ..+-..+-. +....+++
T Consensus        45 ~~~k~~~~i~~~~~~~~~~~l-~d~~~-~~~Wd~~-~~~~~~~~~~~~--~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~  119 (203)
T d1ln1a_          45 YEYKVFGVLEDCSPTLLADIY-MDSDY-RKQWDQY-VKELYEQECNGE--TVVYWEVKYPFPMSNRDYVYLRQRRDLDME  119 (203)
T ss_dssp             EEEEEEEEETTSCHHHHHHHH-HCHHH-HHHHCTT-EEEEEEEEETTE--EEEEEEECCCTTSCCEEEEEEEEEEEECST
T ss_pred             EEEEEEEEEcCCCHHHHHHHH-cCHhH-hhhhccc-ceEEEEEccCCc--EEEEEEcccccccCCceEEEEEEEEEccCC
Confidence            4577788995 9999999997 79995 8999997 455543222221  2222333211  112222322 22223444


Q ss_pred             CcEEEEEE---Eecccc-----ccceeEEEEEEEEeeCCCCceeEEEEEEEEEcCCCCCChHHHHH-HHHHHHHHHHHHH
Q 047051           80 NHVFRYSI---VEGGIL-----GFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRN-IKQGILTMVKAAE  150 (164)
Q Consensus        80 ~~~~~Y~i---~eg~~~-----~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~ie  150 (164)
                      ...+...+   .+-+..     ......+.+.+.++|.++++|.+.+....+|.+.  +|.-.+.. +.+....+++.|.
T Consensus       120 ~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~~Dp~G~--iP~~lvn~~~~~~~~~~~~~l~  197 (203)
T d1ln1a_         120 GRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQ--IPSWLINWAAKNGVPNFLKDMA  197 (203)
T ss_dssp             TCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSC--CCHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEEEcCCCCc--CHHHHHHHHHHHHHHHHHHHHH
Confidence            33222221   111111     0134467788999999888999999999888753  33322332 4455667777776


Q ss_pred             HHHh
Q 047051          151 RFLL  154 (164)
Q Consensus       151 ~~l~  154 (164)
                      +..+
T Consensus       198 k~~~  201 (203)
T d1ln1a_         198 RACQ  201 (203)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6554

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.89  E-value=3.9  Score=28.13  Aligned_cols=116  Identities=9%  Similarity=-0.025  Sum_probs=66.7

Q ss_pred             EEEEEEEEecCCHHHHHHHHhcCcccccccccCcceeeEEEecC--CCCcccEEEEEee-c-CCcceeEEEEEEEEeeCC
Q 047051            4 GSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEG--DGGVGTIKKFNFT-E-AVKEFRYVKDRVEIMDNE   79 (164)
Q Consensus         4 ~~~~~e~~i~apa~~vW~~~~~d~~~~~p~~~P~~v~s~e~~eG--dg~~G~vR~~~~~-~-g~~~~~~~kErl~~~D~~   79 (164)
                      ..+..+..++++++++...+..+    .+.|.|. +.++++++-  ++.  .|-...+. + ...+-..+.-+-...|.+
T Consensus        44 ~~~k~~~~i~a~~~~vl~~~l~~----r~~Wd~~-~~~~~~le~~~~~~--~i~y~~~~~p~pvs~RD~v~~~~~~~~~~  116 (197)
T d2psoa1          44 KLWKASVEVEAPPSVVLNRVLRE----RHLWDED-FVQWKVVETLDRQT--EIYQYVLNSMAPHPSRDFVVLRTWKTDLP  116 (197)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHHC----GGGTCTT-BCCCEEEEEEETTE--EEEEEEECCSSSCCCEEEEEEEEEESCCG
T ss_pred             EEEEEEEEEcCCHHHHHHHHHHh----HHHHhhh-hheEEEEEEcCCCC--EEEEEEccCCCcccceeEEEEEEEEEeCC
Confidence            35677889999999998664433    2578885 666777763  221  12222222 1 111122333333334433


Q ss_pred             C--cEEEEEEEecccc----ccceeEEEEEEEEeeCCCCceeEEEEEEEEEcC
Q 047051           80 N--HVFRYSIVEGGIL----GFKVNSYVADVTFTSSSDGDCFAKLKIEYESLG  126 (164)
Q Consensus        80 ~--~~~~Y~i~eg~~~----~~~~~~y~~ti~v~~~~dg~s~v~w~~~~~~~~  126 (164)
                      +  ..+...-++.+..    ..-...+.+.+.++|.++++|.+.+.+..+|.+
T Consensus       117 ~~~~~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~Dp~G  169 (197)
T d2psoa1         117 KGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLKG  169 (197)
T ss_dssp             GGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCSS
T ss_pred             CCEEEEEEEeccccCCCCCCcEEEEEEeccEEEEECCCCcEEEEEEEEECCCC
Confidence            3  3443333333321    012345677788999999899999999999976