Citrus Sinensis ID: 047053

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MNPNQTPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFKSTEE
Secondary Structure (PSIPRED)
cccccccccccccHHHHHccHHHHHHHcccccccccccEEEEEEEEcccccccccccccccccccccccEEEEEEEcccccccEEEEEEEEcccccccHHHcccccccccEEEEEEEcccccEEEEEEEEEEEcccccccccEEEEEEEEEEEEccccccccccHHHHHHHHHHcHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEcccHHHHHHHHHHccccccccccEEEEEEEcccccEEEEEEEEEEcccccccccHHHHHccccccEEEEEEEccccccccEEEEEEEccccccccccEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mnpnqtpssdalTLEELSKLETTIKtyhtfppspntctslitqkintplsfvwpfvrdftnpdkykNFIRSCTmkvgagevgsvrdvniisgppattsteRLEMLDDENHILSFRVlggdhrlqnyrsvtsvndfiSEETGEVYCVVLESYVvdipegnsdddtrlFVGTVVKLNLARLADLAMASFKSTEE
Flexible Loop (DISEMBL)
mnpnqtpssdalTLEELSKLETTIKTyhtfppspnTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMkvgagevgsvrdvniisgppattsterLEMLDDENHILSFRVLggdhrlqnyrSVTSVNDFISEETGEVYCVVLESYVVDIpegnsdddtrLFVGTVVKLNLARLADLamasfkstee
Low Complexity Region (SEG)
MNPNQTPSSDAltleelsklettiktYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFKSTEE
Disordered region (IsUnstruct)
********************ETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISG**********EMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM********
Disordered Region (DISOPRED)
****************LSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLAD***********
Disordered Region (DISEMBL)
***********LTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM********
Disordered Region (DISPRO)
***********LTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPNQTPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFKSTEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
O80992	190	Abscisic acid receptor PY	yes	no	0.953	0.963	0.584	3e-62
Q9SSM7	209	Abscisic acid receptor PY	no	no	0.916	0.842	0.581	2e-57
O49686	191	Abscisic acid receptor PY	no	no	0.921	0.926	0.511	5e-47
Q84MC7	187	Abscisic acid receptor PY	no	no	0.838	0.860	0.487	9e-41
Q9FGM1	188	Abscisic acid receptor PY	no	no	0.817	0.835	0.487	2e-39
Q8S8E3	215	Abscisic acid receptor PY	no	no	0.833	0.744	0.459	6e-39
Q8VZS8	221	Abscisic acid receptor PY	no	no	0.942	0.819	0.489	1e-38
Q9FLB1	203	Abscisic acid receptor PY	no	no	0.791	0.748	0.493	2e-38
Q1ECF1	211	Abscisic acid receptor PY	no	no	0.802	0.729	0.477	3e-37
Q8H1R0	183	Abscisic acid receptor PY	no	no	0.859	0.901	0.452	9e-36

>sp|O80992|PYL2_ARATH Abscisic acid receptor PYL2 OS=Arabidopsis thaliana GN=PYL2 PE=1 SV=1

 Score =  237 bits (605), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 146/183 (79%)

Query: 4   NQTPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPD 63
           + +P+   LT EE   LE  IKTYH F P P TCTSLITQ+I+ P S VWP +R F NP+
Sbjct: 2   SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPE 61

Query: 64  KYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRL 123
           +YK+F++ C +  G G+VGSVR+V +ISG PA+TSTERLE +DD++ +LSFRV+GG+HRL
Sbjct: 62  RYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRL 121

Query: 124 QNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
           +NY+SVTSVN+F+++++G+VY VVLESY VDIPEGN+++DT++FV TVVKLNL +L   A
Sbjct: 122 KNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAA 181

Query: 184 MAS 186
            ++
Sbjct: 182 TSA 184

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSM7|PYL3_ARATH Abscisic acid receptor PYL3 OS=Arabidopsis thaliana GN=PYL3 PE=1 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/184 (58%), Positives = 144/184 (78%), Gaps = 8/184 (4%)

Query: 11  ALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIR 70
            LT +E S L++ I+T+HTFP SPNTCTSLI  +++ P   +W FVRDF NP+KYK+FI+
Sbjct: 24  GLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIK 83

Query: 71  SCTMKV-GAG----EVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQN 125
           SCT++V G G    +VG++R+V+++SG PA+TS E LE+LD+E  ILSFRVLGG+HRL N
Sbjct: 84  SCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNN 143

Query: 126 YRSVTSVNDFI---SEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL 182
           YRSVTSVN+F+    ++   VY VVLESY+VDIP+GN+++DTR+FV TVVK NL  LA +
Sbjct: 144 YRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVI 203

Query: 183 AMAS 186
           + AS
Sbjct: 204 STAS 207

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|O49686|PYR1_ARATH Abscisic acid receptor PYR1 OS=Arabidopsis thaliana GN=PYR1 PE=1 SV=1

 Score =  187 bits (474), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 127/180 (70%), Gaps = 3/180 (1%)

Query: 12  LTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRS 71
           LT EE S+L+ +I  +HT+   P +C+SL  Q+I+ P   VW  VR F  P  YK+FI+S
Sbjct: 5   LTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKS 64

Query: 72  CTMKVG-AGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVT 130
           C+++      VG  RDV +ISG PA TSTERL++LDDE  +  F ++GG+HRL NY+SVT
Sbjct: 65  CSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVT 124

Query: 131 SVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFKST 190
           +V+ F  E+   ++ VVLESYVVD+PEGNS+DDTR+F  TVVKLNL +LA +A A  +++
Sbjct: 125 TVHRF--EKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMARNS 182

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84MC7|PYL9_ARATH Abscisic acid receptor PYL9 OS=Arabidopsis thaliana GN=PYL9 PE=1 SV=1

 Score =  166 bits (420), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 113/166 (68%), Gaps = 5/166 (3%)

Query: 20  LETT--IKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG 77
           LET   ++T+H      N CTS + + I  PL  VW  VR F  P KYK F+  CT+ +G
Sbjct: 15  LETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTV-IG 73

Query: 78  AGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFIS 137
             E+GS+R+VN+ SG PATTSTERLE+LDDE HIL  +++GGDHRL+NY S+ +V+  I 
Sbjct: 74  DPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEII 133

Query: 138 EETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
           E  G    +V+ES+VVD+P+GN+ D+T  FV  +++ NL  LAD++
Sbjct: 134 E--GRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVS 177

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGM1|PYL8_ARATH Abscisic acid receptor PYL8 OS=Arabidopsis thaliana GN=PYL8 PE=1 SV=1

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 108/160 (67%), Gaps = 3/160 (1%)

Query: 24  IKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGS 83
           I+ +H      N C+S + + IN P+  VW  VR F  P KYK FI  C +K G  E+G+
Sbjct: 19  IRRHHKHELVDNQCSSTLVKHINAPVHIVWSLVRRFDQPQKYKPFISRCVVK-GNMEIGT 77

Query: 84  VRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEV 143
           VR+V++ SG PAT STERLE+LDD  HILS R++GGDHRL+NY S+ S++    E  G +
Sbjct: 78  VREVDVKSGLPATRSTERLELLDDNEHILSIRIVGGDHRLKNYSSIISLHPETIE--GRI 135

Query: 144 YCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
             +V+ES+VVD+PEGN+ D+T  FV  ++K NL  LAD++
Sbjct: 136 GTLVIESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 175

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8E3|PYL6_ARATH Abscisic acid receptor PYL6 OS=Arabidopsis thaliana GN=PYL6 PE=1 SV=1

 Score =  160 bits (404), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 109/161 (67%), Gaps = 1/161 (0%)

Query: 24  IKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVG 82
           ++  HT    P+ C S++ Q +  P+S VW  +  F +P  YK+F++SC + +G G EVG
Sbjct: 48  VELSHTHVVGPSQCFSVVVQDVEAPVSTVWSILSRFEHPQAYKHFVKSCHVVIGDGREVG 107

Query: 83  SVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGE 142
           SVR+V ++SG PA  S ERLE++DD+ H++SF V+GGDHRL NY+SVT+V++   +  G+
Sbjct: 108 SVREVRVVSGLPAAFSLERLEIMDDDRHVISFSVVGGDHRLMNYKSVTTVHESEEDSDGK 167

Query: 143 VYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
               V+ESYVVD+P GN  ++T  F  T+V+ NL  LA LA
Sbjct: 168 KRTRVVESYVVDVPAGNDKEETCSFADTIVRCNLQSLAKLA 208

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZS8|PYL1_ARATH Abscisic acid receptor PYL1 OS=Arabidopsis thaliana GN=PYL1 PE=1 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 124/184 (67%), Gaps = 3/184 (1%)

Query: 4   NQTPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPD 63
           +QT  SD LT +E ++L  +I  +HT+      C+SL+ Q+I+ P   VW  VR F  P 
Sbjct: 25  HQTMPSD-LTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQ 83

Query: 64  KYKNFIRSCTMKVG-AGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHR 122
            YK+FI+SC +       VG  RDVN+ISG PA TS ERL++LDD+  +  F + GG+HR
Sbjct: 84  IYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHR 143

Query: 123 LQNYRSVTSVNDF-ISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLAD 181
           L+NY+SVT+V+ F   EE   ++ VVLESYVVD+PEGNS++DTRLF  TV++LNL +LA 
Sbjct: 144 LRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLAS 203

Query: 182 LAMA 185
           +  A
Sbjct: 204 ITEA 207

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB1|PYL5_ARATH Abscisic acid receptor PYL5 OS=Arabidopsis thaliana GN=PYL5 PE=1 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 107/158 (67%), Gaps = 6/158 (3%)

Query: 24  IKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVG 82
           +  +HT    P+ C S + Q I+ P   VW  VR F NP  YKNFIR C +  G G  VG
Sbjct: 45  VAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLHVG 104

Query: 83  SVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGE 142
            +R+V ++SG PA +STERLE+LD+E H++SF V+GGDHRL+NYRSVT+++    E T  
Sbjct: 105 DLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLKNYRSVTTLHASDDEGT-- 162

Query: 143 VYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLA 180
              VV+ESY+VD+P GN++++T  FV T+V+ NL  LA
Sbjct: 163 ---VVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSLA 197

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECF1|PYL7_ARATH Abscisic acid receptor PYL7 OS=Arabidopsis thaliana GN=PYL7 PE=1 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 105/159 (66%), Gaps = 5/159 (3%)

Query: 23  TIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVG 82
           +++  H      N CTS++ + I  P+  VW  VR F  P KYK FI  CT+  G  E+G
Sbjct: 22  SLRLRHLHHCRENQCTSVLVKYIQAPVHLVWSLVRRFDQPQKYKPFISRCTVN-GDPEIG 80

Query: 83  SVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVN-DFISEETG 141
            +R+VN+ SG PATTSTERLE LDDE HIL   ++GGDHRL+NY S+ +V+ + I   +G
Sbjct: 81  CLREVNVKSGLPATTSTERLEQLDDEEHILGINIIGGDHRLKNYSSILTVHPEMIDGRSG 140

Query: 142 EVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLA 180
               +V+ES+VVD+P+GN+ DDT  FV +++K NL  LA
Sbjct: 141 T---MVMESFVVDVPQGNTKDDTCYFVESLIKCNLKSLA 176

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R0|PYL10_ARATH Abscisic acid receptor PYL10 OS=Arabidopsis thaliana GN=PYL10 PE=1 SV=1

 Score =  149 bits (377), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 109/170 (64%), Gaps = 5/170 (2%)

Query: 15  EELSKLETT-IKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCT 73
           +E  K+E+  IK +H      + C+S + + I  PL  VW  VR F  P KYK FI  C 
Sbjct: 4   DETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCV 63

Query: 74  MKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVN 133
           ++    EVGSVR+V++ SG PAT STE LE+LDD  HIL  R++GGDHRL+NY S  S++
Sbjct: 64  VQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLH 123

Query: 134 -DFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL 182
            + I  +TG    + +ES+VVD+PEGN+ ++T  FV  +++ NL  LAD+
Sbjct: 124 SETIDGKTG---TLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADV 170

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
255550818	189	conserved hypothetical protein [Ricinus	0.984	1.0	0.628	1e-65
296081625	185	unnamed protein product [Vitis vinifera]	0.963	1.0	0.633	1e-63
224142879	175	predicted protein [Populus trichocarpa]	0.901	0.988	0.651	1e-61
449447331	193	PREDICTED: abscisic acid receptor PYL2-l	0.958	0.953	0.612	1e-61
357437499	189	Abscisic acid receptor PYL2 [Medicago tr	0.927	0.941	0.622	1e-61
356509815	189	PREDICTED: abscisic acid receptor PYL2-l	0.916	0.931	0.613	3e-61
356554070	210	PREDICTED: abscisic acid receptor PYL2-l	0.906	0.828	0.638	4e-61
356518155	187	PREDICTED: abscisic acid receptor PYL2-l	0.916	0.941	0.613	4e-61
356562193	188	PREDICTED: abscisic acid receptor PYL2-l	0.906	0.925	0.632	1e-60
303325104	193	Chain A, X-Ray Crystal Structure Of The	0.953	0.948	0.584	1e-60

>gi|255550818|ref|XP_002516457.1| conserved hypothetical protein [Ricinus communis] gi|223544277|gb|EEF45798.1| conserved hypothetical protein [Ricinus communis]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 152/191 (79%), Gaps = 2/191 (1%)

Query: 1   MNPNQTPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFT 60
           M P+++P    LT EE S+L+  + TYH F P+PNTCTSLITQ+I+ P   VWPFVR F 
Sbjct: 1   MEPSRSPPPQGLTREEYSELKPLVDTYHKFEPTPNTCTSLITQRIDAPSQVVWPFVRSFE 60

Query: 61  NPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGD 120
           NP KYK+FI+SC M+ G G +GS+R+V ++SG PA+TSTERLE+LDDE HILSFRV+GG+
Sbjct: 61  NPQKYKHFIKSCNMR-GDGGIGSIREVTVVSGIPASTSTERLEILDDEKHILSFRVVGGE 119

Query: 121 HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLA 180
           HRL NYRSVTSVN+FI+ E G+VY +VLESY+VDIPEGN+ +DT++FV TVVKLNL +LA
Sbjct: 120 HRLNNYRSVTSVNEFINNE-GKVYTIVLESYIVDIPEGNTGEDTKMFVDTVVKLNLQKLA 178

Query: 181 DLAMASFKSTE 191
            +A AS    E
Sbjct: 179 VVATASLHGHE 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081625|emb|CBI20630.3| unnamed protein product [Vitis vinifera]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/191 (63%), Positives = 146/191 (76%), Gaps = 6/191 (3%)

Query: 1   MNPNQTPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFT 60
           M+P+       LT EE   LE  I+ YHTF PSPNTCTSLITQKI+ P   VWPFVR F 
Sbjct: 1   MDPHH---HHGLTEEEFRALEPIIQNYHTFEPSPNTCTSLITQKIDAPAQVVWPFVRSFE 57

Query: 61  NPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGD 120
           NP KYK+FI+ CTM+ G G VGS+R+V ++SG PA+TSTERLE+LDDE HILSFRV+GG+
Sbjct: 58  NPQKYKHFIKDCTMR-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGE 116

Query: 121 HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLA 180
           HRL NYRSVTSVNDF  E  G+ Y +VLESY+VDIPEGN+ +DT++FV TVVKLNL +LA
Sbjct: 117 HRLNNYRSVTSVNDFSKE--GKDYTIVLESYIVDIPEGNTGEDTKMFVDTVVKLNLQKLA 174

Query: 181 DLAMASFKSTE 191
            +A+ S    E
Sbjct: 175 VVAITSLHENE 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142879|ref|XP_002324762.1| predicted protein [Populus trichocarpa] gi|222866196|gb|EEF03327.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/175 (65%), Positives = 140/175 (80%), Gaps = 2/175 (1%)

Query: 11  ALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIR 70
            LT EE  +L+  I TYH F P+PNTCTSLITQ+I+ P   VWPFVR F NP KYK+FI+
Sbjct: 3   GLTQEEYMELKPLIDTYHKFEPAPNTCTSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIK 62

Query: 71  SCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVT 130
           SC M  G G VGSVR+V ++SG PA+TS ERLE+LDDENHILSFRV+GG+HRL NY+SVT
Sbjct: 63  SCNMSAGDGGVGSVREVAVVSGLPASTSIERLEILDDENHILSFRVVGGEHRLNNYKSVT 122

Query: 131 SVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185
           SVN+F  E  G+VY +VLESY+VDIP GN+ +DT++FV TVVKLNL +LA +A+A
Sbjct: 123 SVNEFNKE--GKVYAIVLESYIVDIPGGNTGEDTKMFVDTVVKLNLQKLAVVAIA 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447331|ref|XP_004141422.1| PREDICTED: abscisic acid receptor PYL2-like [Cucumis sativus] gi|449486756|ref|XP_004157392.1| PREDICTED: abscisic acid receptor PYL2-like [Cucumis sativus]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/186 (61%), Positives = 143/186 (76%), Gaps = 2/186 (1%)

Query: 1   MNPNQTPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFT 60
           M   +T     L  +E  +L+  I+TYH F PSPNT TSLITQ+I+ PL  VWPFVR F 
Sbjct: 1   MAAKKTSPLPGLEADEYQELQPLIQTYHKFEPSPNTTTSLITQRIDAPLDAVWPFVRSFD 60

Query: 61  NPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGD 120
           NP KYK+FI+SC M  G G VGS+R+V ++SG PA+TSTERLE+LDDE HILSFRV+GG+
Sbjct: 61  NPQKYKHFIKSCKMSAGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGE 120

Query: 121 HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLA 180
           HRL NYRSVTSVN+F   +  +VY +VLESY+VDIPEGN+ +DT++FV TV+KLNL +LA
Sbjct: 121 HRLNNYRSVTSVNEF--NKDSKVYTIVLESYIVDIPEGNTGEDTKMFVDTVIKLNLQKLA 178

Query: 181 DLAMAS 186
            +A AS
Sbjct: 179 GVATAS 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437499|ref|XP_003589025.1| Abscisic acid receptor PYL2 [Medicago truncatula] gi|355478073|gb|AES59276.1| Abscisic acid receptor PYL2 [Medicago truncatula]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/180 (62%), Positives = 142/180 (78%), Gaps = 2/180 (1%)

Query: 10  DALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFI 69
             LT EE  +LE  IK YH   P+ NTCTS+IT KI  P S VWP+VR F NP KYK+FI
Sbjct: 8   QGLTEEEYKELEPIIKKYHILEPTSNTCTSIITYKIEAPSSIVWPYVRSFENPQKYKHFI 67

Query: 70  RSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSV 129
           + C MK G G VGS+R+V ++SG PA+TSTERLE+LDDE H++SFRV+GG+HRLQNYRSV
Sbjct: 68  KGCNMK-GDGNVGSIREVTVVSGLPASTSTERLEILDDEKHVISFRVVGGEHRLQNYRSV 126

Query: 130 TSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFKS 189
           TSVN+F++ E G+VY +VLESY+VDIP GN+++DT++FV TVVKLNL +L  +AM+S  S
Sbjct: 127 TSVNEFVNNE-GKVYTIVLESYIVDIPHGNTEEDTKMFVDTVVKLNLQKLGVVAMSSCSS 185

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509815|ref|XP_003523641.1| PREDICTED: abscisic acid receptor PYL2-like [Glycine max]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/176 (61%), Positives = 141/176 (80%)

Query: 11  ALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIR 70
            LT EE S+LE+ I T+H F PSP  C+S+I Q+I+ P   VWP VR F NP KYK+F++
Sbjct: 10  GLTPEEFSELESIINTHHKFEPSPEICSSIIAQRIDAPAHTVWPLVRSFENPQKYKHFVK 69

Query: 71  SCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVT 130
           SC M+ G G VGS+R+V ++SG PA+TSTERLE+LDD+ H+LSFRV+GG+HRL NYRSVT
Sbjct: 70  SCNMRSGDGGVGSIREVTVVSGLPASTSTERLEILDDDKHLLSFRVVGGEHRLHNYRSVT 129

Query: 131 SVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           SVN+F + + G+VY +VLESYVVDIPEGN+  DT++FV TVVKLNL +L ++AMA+
Sbjct: 130 SVNEFKNPDNGKVYTIVLESYVVDIPEGNTGVDTKMFVDTVVKLNLQKLGEVAMAT 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554070|ref|XP_003545372.1| PREDICTED: abscisic acid receptor PYL2-like [Glycine max]

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/177 (63%), Positives = 141/177 (79%), Gaps = 3/177 (1%)

Query: 10  DALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFI 69
             LT EEL+KLE  IK YH F  SPNTC S+IT +I  P   VWPFVR F NP KYK+FI
Sbjct: 32  QGLTPEELTKLEPIIKKYHLFEQSPNTCFSIITYRIEAPAKAVWPFVRSFDNPQKYKHFI 91

Query: 70  RSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSV 129
           + C M+ G G VGS+R+V ++SG PA+TSTERLE+LDD+ H+LSFRV+GG+HRL+NYRSV
Sbjct: 92  KGCNMR-GDGGVGSIREVTVVSGLPASTSTERLEILDDDKHVLSFRVVGGEHRLKNYRSV 150

Query: 130 TSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           TSVN+F  E  G+VY +VLESY+VDIPEGN+++DT++FV TVVKLNL +L  +AMAS
Sbjct: 151 TSVNEFNKE--GKVYTIVLESYIVDIPEGNTEEDTKMFVDTVVKLNLQKLGVVAMAS 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518155|ref|XP_003527747.1| PREDICTED: abscisic acid receptor PYL2-like [Glycine max]

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 108/176 (61%), Positives = 141/176 (80%)

Query: 11  ALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIR 70
            LT EE ++LE+TI T+H F  SP  C+S+I Q+I+ P   VWP VR F NP KYK+F++
Sbjct: 11  GLTPEEFTELESTINTHHKFEASPEICSSIIAQRIDAPAHTVWPLVRSFENPQKYKHFVK 70

Query: 71  SCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVT 130
           SC M+ G G VGS+R+V ++SG PA+TSTERLE+LDD+NH+LSFRV+GG+HRL NYRSVT
Sbjct: 71  SCNMRSGDGGVGSIREVTVVSGLPASTSTERLEILDDDNHLLSFRVVGGEHRLHNYRSVT 130

Query: 131 SVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           SVN+F   + G+VY +VLESYVVDIPEGN+  DT++FV TVVKLNL +L ++AMA+
Sbjct: 131 SVNEFKRPDNGKVYTIVLESYVVDIPEGNTGVDTKMFVDTVVKLNLQKLGEVAMAT 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562193|ref|XP_003549356.1| PREDICTED: abscisic acid receptor PYL2-like [Glycine max]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/177 (63%), Positives = 140/177 (79%), Gaps = 3/177 (1%)

Query: 10  DALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFI 69
             LT EEL++LE  IK YH F  S N C S+IT +I  P S VWP VR+F NP KYK+FI
Sbjct: 10  QGLTPEELTQLEPIIKKYHLFEASSNKCFSIITHRIEAPASSVWPLVRNFDNPQKYKHFI 69

Query: 70  RSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSV 129
           + C MK G G VGS+R+V ++SG PA+TSTERLE+LDD+ H+LSFRV+GG+HRLQNYRSV
Sbjct: 70  KGCNMK-GDGSVGSIREVTVVSGLPASTSTERLEILDDDKHVLSFRVVGGEHRLQNYRSV 128

Query: 130 TSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           TSVN+F  E  G+VY +VLESY+VDIPEGN+++DT++FV TVVKLNL +L  +AMAS
Sbjct: 129 TSVNEFHKE--GKVYTIVLESYIVDIPEGNTEEDTKMFVDTVVKLNLQKLGVVAMAS 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|303325104|pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex gi|303325105|pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex gi|303325106|pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 146/183 (79%)

Query: 4   NQTPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPD 63
           + +P+   LT EE   LE  IKTYH F P P TCTSLITQ+I+ P S VWP +R F NP+
Sbjct: 5   SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPE 64

Query: 64  KYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRL 123
           +YK+F++ C +  G G+VGSVR+V +ISG PA+TSTERLE +DD++ +LSFRV+GG+HRL
Sbjct: 65  RYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRL 124

Query: 124 QNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
           +NY+SVTSVN+F+++++G+VY VVLESY VDIPEGN+++DT++FV TVVKLNL +L   A
Sbjct: 125 KNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAA 184

Query: 184 MAS 186
            ++
Sbjct: 185 TSA 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2057407	190	PYL2 "PYR1-like 2" [Arabidopsi	0.833	0.842	0.606	3e-53
TAIR|locus:2032738	209	PYL3 "AT1G73000" [Arabidopsis	0.833	0.765	0.595	5.8e-50
TAIR|locus:2141040	191	PYR1 "PYRABACTIN RESISTANCE 1"	0.843	0.848	0.515	2.8e-41
TAIR|locus:2178585	221	PYL1 "PYR1-like 1" [Arabidopsi	0.828	0.719	0.509	1.1e-39
TAIR|locus:2057175	207	PYL4 "PYR1-like 4" [Arabidopsi	0.791	0.734	0.506	8.9e-38
TAIR|locus:2035227	187	RCAR1 "regulatory component of	0.760	0.780	0.510	3.9e-37
TAIR|locus:2063063	215	PYL6 "PYR1-like 6" [Arabidopsi	0.812	0.725	0.471	6.3e-37
TAIR|locus:2153549	203	PYL5 "PYRABACTIN RESISTANCE 1-	0.776	0.733	0.503	6.3e-37
TAIR|locus:2163731	188	RCAR3 "regulatory components o	0.802	0.819	0.490	2.7e-36
TAIR|locus:2152420	161	PYL11 "AT5G45860" [Arabidopsis	0.760	0.906	0.496	1.9e-35

TAIR|locus:2057407 PYL2 "PYR1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 97/160 (60%), Positives = 133/160 (83%)

Query:    27 YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
             YH F P P TCTSLITQ+I+ P S VWP +R F NP++YK+F++ C +  G G+VGSVR+
Sbjct:    25 YHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVRE 84

Query:    87 VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCV 146
             V +ISG PA+TSTERLE +DD++ +LSFRV+GG+HRL+NY+SVTSVN+F+++++G+VY V
Sbjct:    85 VTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTV 144

Query:   147 VLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
             VLESY VDIPEGN+++DT++FV TVVKLNL +L   A ++
Sbjct:   145 VLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 184

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IGI;IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2032738 PYL3 "AT1G73000" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 100/168 (59%), Positives = 133/168 (79%)

Query:    27 YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKV-GAG----EV 81
             +HTFP SPNTCTSLI  +++ P   +W FVRDF NP+KYK+FI+SCT++V G G    +V
Sbjct:    40 HHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKV 99

Query:    82 GSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFI---SE 138
             G++R+V+++SG PA+TS E LE+LD+E  ILSFRVLGG+HRL NYRSVTSVN+F+    +
Sbjct:   100 GTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKD 159

Query:   139 ETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
             +   VY VVLESY+VDIP+GN+++DTR+FV TVVK NL  LA ++ AS
Sbjct:   160 KKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVISTAS 207

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2141040 PYR1 "PYRABACTIN RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 85/165 (51%), Positives = 117/165 (70%)

Query:    27 YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVGSVR 85
             +HT+   P +C+SL  Q+I+ P   VW  VR F  P  YK+FI+SC+++      VG  R
Sbjct:    20 FHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTR 79

Query:    86 DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYC 145
             DV +ISG PA TSTERL++LDDE  +  F ++GG+HRL NY+SVT+V+ F  E+   ++ 
Sbjct:    80 DVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRF--EKENRIWT 137

Query:   146 VVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFKST 190
             VVLESYVVD+PEGNS+DDTR+F  TVVKLNL +LA +A A  +++
Sbjct:   138 VVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMARNS 182

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA;IPI

GO:0010427 "abscisic acid binding" evidence=IDA

GO:0080163 "regulation of protein serine/threonine phosphatase activity" evidence=IDA

GO:0004872 "receptor activity" evidence=IMP;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA;IPI

GO:0010029 "regulation of seed germination" evidence=RCA

TAIR|locus:2178585 PYL1 "PYR1-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 82/161 (50%), Positives = 111/161 (68%)

Query:    27 YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVGSVR 85
             +HT+      C+SL+ Q+I+ P   VW  VR F  P  YK+FI+SC +       VG  R
Sbjct:    47 FHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTR 106

Query:    86 DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGE-VY 144
             DVN+ISG PA TS ERL++LDD+  +  F + GG+HRL+NY+SVT+V+ F  EE  E ++
Sbjct:   107 DVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIW 166

Query:   145 CVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185
              VVLESYVVD+PEGNS++DTRLF  TV++LNL +LA +  A
Sbjct:   167 TVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEA 207

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IGI;IDA

GO:0010427 "abscisic acid binding" evidence=IDA

GO:0080163 "regulation of protein serine/threonine phosphatase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2057175 PYL4 "PYR1-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 80/158 (50%), Positives = 113/158 (71%)

Query:    27 YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGE-VGSVR 85
             +HT    PN C S + Q+I+ P+S VW  VR F NP  YK+F++SC++  G G+ VGS+R
Sbjct:    42 FHTHEVGPNQCCSAVIQEISAPISTVWSVVRRFDNPQAYKHFLKSCSVIGGDGDNVGSLR 101

Query:    86 DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYC 145
              V+++SG PA +STERL++LDDE H++SF V+GGDHRL NYRSVT+++   S  +G V  
Sbjct:   102 QVHVVSGLPAASSTERLDILDDERHVISFSVVGGDHRLSNYRSVTTLHP--SPISGTV-- 157

Query:   146 VVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
              V+ESYVVD+P GN+ ++T  FV  +V+ NL  LA +A
Sbjct:   158 -VVESYVVDVPPGNTKEETCDFVDVIVRCNLQSLAKIA 194

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IGI;IDA

TAIR|locus:2035227 RCAR1 "regulatory component of ABA receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 76/149 (51%), Positives = 105/149 (70%)

Query:    35 NTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP 94
             N CTS + + I  PL  VW  VR F  P KYK F+  CT+ +G  E+GS+R+VN+ SG P
Sbjct:    32 NQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTV-IGDPEIGSLREVNVKSGLP 90

Query:    95 ATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVD 154
             ATTSTERLE+LDDE HIL  +++GGDHRL+NY S+ +V+  I E  G    +V+ES+VVD
Sbjct:    91 ATTSTERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEIIE--GRAGTMVIESFVVD 148

Query:   155 IPEGNSDDDTRLFVGTVVKLNLARLADLA 183
             +P+GN+ D+T  FV  +++ NL  LAD++
Sbjct:   149 VPQGNTKDETCYFVEALIRCNLKSLADVS 177

GO:0005634 "nucleus" evidence=ISM

GO:0004872 "receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0010427 "abscisic acid binding" evidence=IDA

TAIR|locus:2063063 PYL6 "PYR1-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 74/157 (47%), Positives = 107/157 (68%)

Query:    28 HTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVGSVRD 86
             HT    P+ C S++ Q +  P+S VW  +  F +P  YK+F++SC + +G G EVGSVR+
Sbjct:    52 HTHVVGPSQCFSVVVQDVEAPVSTVWSILSRFEHPQAYKHFVKSCHVVIGDGREVGSVRE 111

Query:    87 VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCV 146
             V ++SG PA  S ERLE++DD+ H++SF V+GGDHRL NY+SVT+V++   +  G+    
Sbjct:   112 VRVVSGLPAAFSLERLEIMDDDRHVISFSVVGGDHRLMNYKSVTTVHESEEDSDGKKRTR 171

Query:   147 VLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
             V+ESYVVD+P GN  ++T  F  T+V+ NL  LA LA
Sbjct:   172 VVESYVVDVPAGNDKEETCSFADTIVRCNLQSLAKLA 208

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=RCA

TAIR|locus:2153549 PYL5 "PYRABACTIN RESISTANCE 1-LIKE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 78/155 (50%), Positives = 108/155 (69%)

Query:    27 YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVGSVR 85
             +HT    P+ C S + Q I+ P   VW  VR F NP  YKNFIR C +  G G  VG +R
Sbjct:    48 HHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLHVGDLR 107

Query:    86 DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYC 145
             +V ++SG PA +STERLE+LD+E H++SF V+GGDHRL+NYRSVT+++   S++ G V  
Sbjct:   108 EVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLKNYRSVTTLH--ASDDEGTV-- 163

Query:   146 VVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLA 180
              V+ESY+VD+P GN++++T  FV T+V+ NL  LA
Sbjct:   164 -VVESYIVDVPPGNTEEETLSFVDTIVRCNLQSLA 197

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0010427 "abscisic acid binding" evidence=IDA

TAIR|locus:2163731 RCAR3 "regulatory components of ABA receptor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 77/157 (49%), Positives = 106/157 (67%)

Query:    27 YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
             +H      N C+S + + IN P+  VW  VR F  P KYK FI  C +K G  E+G+VR+
Sbjct:    22 HHKHELVDNQCSSTLVKHINAPVHIVWSLVRRFDQPQKYKPFISRCVVK-GNMEIGTVRE 80

Query:    87 VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCV 146
             V++ SG PAT STERLE+LDD  HILS R++GGDHRL+NY S+ S++    E  G +  +
Sbjct:    81 VDVKSGLPATRSTERLELLDDNEHILSIRIVGGDHRLKNYSSIISLHPETIE--GRIGTL 138

Query:   147 VLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
             V+ES+VVD+PEGN+ D+T  FV  ++K NL  LAD++
Sbjct:   139 VIESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 175

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2152420 PYL11 "AT5G45860" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 74/149 (49%), Positives = 101/149 (67%)

Query:    35 NTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP 94
             +TC S + Q I+ PLS VW  +R F NP  YK F+++C +  G G  GSVR+V ++SG P
Sbjct:     8 HTCGSTLVQTIDAPLSLVWSILRRFDNPQAYKQFVKTCNLSSGDGGEGSVREVTVVSGLP 67

Query:    95 ATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVD 154
             A  S ERL+ LDDE+H++   ++GGDHRL NYRS T    F++ +T E   VV+ESYVVD
Sbjct:    68 AEFSRERLDELDDESHVMMISIIGGDHRLVNYRSKTMA--FVAADTEEK-TVVVESYVVD 124

Query:   155 IPEGNSDDDTRLFVGTVVKLNLARLADLA 183
             +PEGNS+++T  F  T+V  NL  LA L+
Sbjct:   125 VPEGNSEEETTSFADTIVGFNLKSLAKLS 153

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80992	PYL2_ARATH	No assigned EC number	0.5846	0.9531	0.9631	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	4e-30
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	5e-11
pfam10604	140	pfam10604, Polyketide_cyc2, Polyketide cyclase / d	1e-10
smart01037	151	smart01037, Bet_v_1, Pathogenesis-related protein	3e-06
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	1e-04

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score =  107 bits (268), Expect = 4e-30
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 8/147 (5%)

Query: 37  CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPAT 96
               ++  I+ P   VW  + DF    K+   + SC ++ G   VG+VR V +  G    
Sbjct: 1   AKVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG---G 57

Query: 97  TSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP 156
           T  ERL  LDD     S+R++ G   ++NY +   V        G+    V  +   D P
Sbjct: 58  TVRERLLALDDAERRYSYRIVEGPLPVKNYVATIRV-----TPEGDGGTRVTWTAEFDPP 112

Query: 157 EGNSDDDTRLFVGTVVKLNLARLADLA 183
           EG +D+  R F+  V +  LA L    
Sbjct: 113 EGLTDELARAFLTGVYRAGLAALKAAL 139

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 55  FVRDFTN-PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILS 113
           FV D    P K    I+S  +  G G  GS++ +    G       ER++ +D+EN    
Sbjct: 20  FVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYK 79

Query: 114 FRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVV 147
           + V+ GD     Y+S      F+    G+  CVV
Sbjct: 80  YTVIEGDVLKDGYKSYKVEIKFVP--KGDGGCVV 111

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|220822 pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 29/141 (20%), Positives = 44/141 (31%), Gaps = 13/141 (9%)

Query: 45  INTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEM 104
           I  P   VW  V DF N  ++   +    +  G G +G V  +         T  E L  
Sbjct: 10  IAAPPEKVWALVSDFENWPRWHPGVLRVEL-EGGGPLGVVGTL---RAGGGRTVREELVE 65

Query: 105 LDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVV--LESYVVDIPEGNSDD 162
            D     L +R++     + NY    +V        G     V     +    P G +  
Sbjct: 66  YDPAGRRLEYRIV-EPLGVTNYVGTWTV-----TPAGGG-TRVTWTGEFDPPGPLGLNGP 118

Query: 163 DTRLFVGTVVKLNLARLADLA 183
                V   ++  L  L  L 
Sbjct: 119 AAAKAVKGDIEAGLDNLKALL 139

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily. Length = 140

>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 62  PDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGD 120
           P    + I+   +  G  G  GS++  N           ER+E +DDE   ++FRVL G 
Sbjct: 31  PKATGHHIQGVDLHEGDWGSHGSIKIWNYTVDGKEEVFKERIEAVDDEKKTITFRVLEG- 89

Query: 121 HRLQNYRSVTSVNDFISEETGEVYCVV 147
             ++ Y+S         +  G      
Sbjct: 90  DVMEEYKSFKGTIQVTPKSGGGSVVKW 116

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 151

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 62  PDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGD 120
           P    + I+   +  G  G  GS++              ER+E  D++N  +++ VL GD
Sbjct: 30  PKAIPHHIQGVEVHEGEWGTGGSIKKWTYTEDGKPKVVKERIEADDEKNKTITYSVLEGD 89

Query: 121 HRLQNYRSVTSVNDFISEETGEVYCVV 147
             L++Y+S  +    I +  G    +V
Sbjct: 90  -VLEDYKSFITTLQVIPKSNGG--SIV 113

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	99.96
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	99.9
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.78
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.75
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.64
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.58
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.51
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.5
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.49
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.46
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.4
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.38
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.35
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.34
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.33
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.29
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.28
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.17
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.12
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.06
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	99.01
PRK10724	158	hypothetical protein; Provisional	98.81
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	98.77
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.72
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.67
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.6
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.52
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	98.42
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.41
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.39
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	98.35
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.31
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	98.28
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.26
COG5637	217	Predicted integral membrane protein [Function unkn	98.16
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	98.05
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	98.04
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	97.92
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	97.83
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	97.78
COG3832	149	Uncharacterized conserved protein [Function unknow	97.59
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	97.21
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	96.91
COG4276	153	Uncharacterized conserved protein [Function unknow	96.88
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	96.62
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	96.27
cd08905	209	START_STARD1-like Cholesterol-binding START domain	96.08
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	95.87
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	95.84
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	95.69
cd08906	209	START_STARD3-like Cholesterol-binding START domain	95.36
cd08874	205	START_STARD9-like C-terminal START domain of mamma	95.32
cd08871	222	START_STARD10-like Lipid-binding START domain of m	95.05
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	94.37
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	94.03
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	93.9
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	93.49
cd00177	193	START Lipid-binding START domain of mammalian STAR	92.53
KOG3177	227	consensus Oligoketide cyclase/lipid transport prot	91.13
cd08913	240	START_STARD14-like Lipid-binding START domain of m	88.52
cd08908	204	START_STARD12-like C-terminal lipid-binding START	87.99
cd08914	236	START_STARD15-like Lipid-binding START domain of m	87.5
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	83.93
smart00234	206	START in StAR and phosphatidylcholine transfer pro	83.08
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	82.65

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=99.96  E-value=1.7e-27  Score=187.08  Aligned_cols=117  Identities=21%  Similarity=0.312  Sum_probs=104.2

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCC--CCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTN--PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~--~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      +...+++|+|||++||+++++|.+  ++.|+|.|++|++++|+|++||||.|+|.+|.+..+++|||+.+|+++|+|+|+
T Consensus         2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y~   81 (148)
T cd07816           2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYT   81 (148)
T ss_pred             cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEEEE
Confidence            356788999999999999999995  578999999999999998999999999988765568999999999999999999


Q ss_pred             EEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC
Q 047053          116 VLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN  159 (192)
Q Consensus       116 ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~  159 (192)
                      +++|++   +|++|+++|+|.|.   +++  +|.+.|+++|++.++.
T Consensus        82 vveg~~~~~~~~~y~~t~~v~~~---~~~--~t~v~Wt~~ye~~~~~  123 (148)
T cd07816          82 VIEGDVLKDGYKSYKVEIKFVPK---GDG--GCVVKWTIEYEKKGDA  123 (148)
T ss_pred             EEecccccCceEEEEEEEEEEEC---CCC--CEEEEEEEEEEECCCC
Confidence            999987   59999999999998   343  4999999999876653

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=99.90  E-value=1.1e-22  Score=160.84  Aligned_cols=118  Identities=19%  Similarity=0.315  Sum_probs=99.9

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCC-CCccCc-ccceeEeecCCCCCC-eEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTN-PDKYKN-FIRSCTMKVGAGEVG-SVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~-~~~w~p-~v~s~~~~eGdG~vG-~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      +.+.++++++||+++|++++...+ +++..| .|+++++++|||++| +||.|+|..|.|..++|||++.+|+++++++|
T Consensus         5 ~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~y   84 (151)
T PF00407_consen    5 KLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTITY   84 (151)
T ss_dssp             EEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEEE
Confidence            456778999999999999997444 455555 899999999998777 99999999888878999999999999999999


Q ss_pred             EEEeCCC--CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCC
Q 047053          115 RVLGGDH--RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNS  160 (192)
Q Consensus       115 ~ileg~~--p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~  160 (192)
                      +++||++  .+++|..++++.|.   ++|  +|.+.|+.+|++..+..
T Consensus        85 ~viEGd~l~~~~~~~~~~~~~~~---~~g--~~v~k~t~~Ye~~~~~~  127 (151)
T PF00407_consen   85 TVIEGDVLGDYKSFKSTIQKIPK---GDG--GCVVKWTIEYEKKGEDV  127 (151)
T ss_dssp             EEEEETTGTTTEEEEEEEEEEEE---TTS--CEEEEEEEEEEESSTSC
T ss_pred             EEEeccccccEEEEEEEEEecCC---CCC--ceEEEEEEEEEecCCCC
Confidence            9999996  88999999999988   444  49999999998765554

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.78  E-value=2.3e-17  Score=124.13  Aligned_cols=138  Identities=30%  Similarity=0.456  Sum_probs=118.2

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      ...+.+|++|+++||+++.|+.++..|.|.+.++++.++..++|+++.+.+..|   ..++++++.+|+.++.+.|++.+
T Consensus         3 i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~~~~   79 (140)
T cd07821           3 VTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYRIVE   79 (140)
T ss_pred             EEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEEecC
Confidence            456789999999999999999999999999999988766436899999998766   57889999999876899999999


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      |+.++.++.+++++.|.   ++|  +|.+.|+..++++.+.....+..++...+..+|++|++.++
T Consensus        80 ~~~~~~~~~~~~~~~~~---~~~--~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~  140 (140)
T cd07821          80 GPLPVKNYVATIRVTPE---GDG--GTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE  140 (140)
T ss_pred             CCCCcccceEEEEEEEC---CCC--ccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence            87888999999999998   343  49999999999875554566778889999999999998864

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.75  E-value=6.6e-16  Score=116.24  Aligned_cols=137  Identities=19%  Similarity=0.202  Sum_probs=112.4

Q ss_pred             ceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053           36 TCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        36 ~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      +++.++++.|++|+++||+++.|+.++..|.|.+.++++.+++ ++|..+.+... |.  ..+.++++.++++++.+.|+
T Consensus         1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~-g~--~~~~~~i~~~~~~~~~~~~~   76 (139)
T PF10604_consen    1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGG-GPGTERTVRVA-GR--GTVREEITEYDPEPRRITWR   76 (139)
T ss_dssp             -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEEC-STEEEEEEEEC-SC--SEEEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcccc-ccceeEEEEec-cc--cceeEEEEEecCCCcEEEEE
Confidence            4678899999999999999999999999999999999987633 35666777754 32  47899999999889999999


Q ss_pred             EEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC-CCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          116 VLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI-PEGNS-DDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       116 ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~-~~g~~-~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      +.  ..++.++..+++|.|.   ++|   |.|.|...+++ ..+.. ...+..+++..++..|++|++.+|
T Consensus        77 ~~--~~~~~~~~~~~~~~~~---~~g---t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E  139 (139)
T PF10604_consen   77 FV--PSGFTNGTGRWRFEPV---GDG---TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE  139 (139)
T ss_dssp             EE--SSSSCEEEEEEEEEEE---TTT---EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EE--ecceeEEEEEEEEEEc---CCC---EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence            97  5688899999999998   454   99999999885 33332 455778889999999999999987

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.64  E-value=2.4e-14  Score=109.56  Aligned_cols=137  Identities=12%  Similarity=0.141  Sum_probs=105.2

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCC-CC-----CeEEEEEeecCCCCceeEEEEEEEecCCceEE
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EV-----GSVRDVNIISGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG-~v-----G~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      ..++.|++|+++||+++.|+.+.+.|.|.+.+|+++++.+ +.     |..+.+..  ... ..+..++.+.++.++.++
T Consensus         2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~~~~~~~~i~   78 (144)
T cd08866           2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFF--KFE-ARVVLELREREEFPRELD   78 (144)
T ss_pred             eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEee--eee-EEEEEEEEEecCCCceEE
Confidence            3578999999999999999999999999999999886643 11     11111111  011 234556777776688999


Q ss_pred             EEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          114 FRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       114 Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      |++++|  ++..|.++.++.|.  +++|  +|.+.|...+++..+.....+..+++..+...|++|++.+|.
T Consensus        79 ~~~~~g--~~~~~~g~w~~~~~--~~~~--~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~  144 (144)
T cd08866          79 FEMVEG--DFKRFEGSWRLEPL--ADGG--GTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES  144 (144)
T ss_pred             EEEcCC--chhceEEEEEEEEC--CCCC--eEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999988  57899999999998  3313  499999999998766666777788889999999999999874

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.58  E-value=2e-13  Score=102.41  Aligned_cols=136  Identities=14%  Similarity=0.038  Sum_probs=103.3

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCC-CCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGA-GEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGd-G~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      +.++.|++|+++||+++.|+.++..|.|.+.+++...+. .++|+...+....+.....++++++.+|+ ++.+.|....
T Consensus         2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~~~~~   80 (140)
T cd08865           2 EESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVFRGSS   80 (140)
T ss_pred             ceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEEEecC
Confidence            457899999999999999999999999999888876543 37898888866432112357899999986 7889999877


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG--NSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g--~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      +++   .+..++++.+.   ++   +|.+.|+..++....  .....+...+...+...|++||+.+|.
T Consensus        81 ~~~---~~~~~~~~~~~---~~---~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  140 (140)
T cd08865          81 GPF---PYEDTYTFEPV---GG---GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA  140 (140)
T ss_pred             CCc---ceEEEEEEEEc---CC---ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence            633   47899999987   44   399999998886321  112335556677788899999998873

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.51  E-value=2.5e-12  Score=97.10  Aligned_cols=136  Identities=10%  Similarity=0.008  Sum_probs=94.4

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCCCCceeEEEEEEEec-CCceEEE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGPPATTSTERLEMLDD-ENHILSF  114 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~p~~~vkErL~~iD~-~~~~~~Y  114 (192)
                      .+.+.++.|+||+++||+++.|+.+++.|.|.+.+++++++ +++.+...++.+..+ +  ...+-+..++. ..+.++|
T Consensus         2 ~~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~i~~   78 (140)
T cd07819           2 IKVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY-G--IKDTYALEYTWDGAGSVSW   78 (140)
T ss_pred             ceEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeee-e--EEEEEEEEEEEcCCCcEEE
Confidence            45677899999999999999999999999999999998654 333333344444322 1  11122223322 2578999


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL  182 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~  182 (192)
                      +..++. +...+.+++++.|.   ++|   |.|.|+..+++.-+.....+..+........+++|++.
T Consensus        79 ~~~~~~-~~~~~~~~~~~~~~---~~~---t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  139 (140)
T cd07819          79 TLVEGE-GNRSQEGSYTLTPK---GDG---TRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR  139 (140)
T ss_pred             EEeccc-ceeEEEEEEEEEEC---CCC---EEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence            999874 67889999999998   443   99999998886444444444455555566666666654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.50  E-value=1.2e-12  Score=99.97  Aligned_cols=138  Identities=14%  Similarity=0.031  Sum_probs=101.4

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEee-cCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNII-SGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~-~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      +.+++|++|+++||+++.|+.+.+.|+|. .+++.+++.++...++.+... .|.  ..-.+....+|+.++++.|..++
T Consensus         2 ~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~~~~   78 (142)
T cd08861           2 EHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGS--VHTWTSRRVLDPEGRRIVFRQEE   78 (142)
T ss_pred             eEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCc--EEEEEEEEEEcCCCCEEEEEEee
Confidence            45789999999999999999999999998 555544433212245545443 232  22224455678878899999998


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE--GNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~--g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      ++.++..+.++..|.|.   +++  +|.|.|..++++..  +.....+..++...+...|++||+.+|+
T Consensus        79 ~~~~~~~~~g~w~~~~~---~~~--~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  142 (142)
T cd08861          79 PPPPVASMSGEWRFEPL---GGG--GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER  142 (142)
T ss_pred             CCCChhhheeEEEEEEC---CCC--cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence            76688999999999998   433  49999999887653  3344556667777789999999999985

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.49  E-value=3.8e-12  Score=96.05  Aligned_cols=135  Identities=16%  Similarity=0.024  Sum_probs=102.1

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      .+.++.|+||+++||+++.|+.+++.|.|.+.++++..+.+++|+..+++...+   ..+..++.++++ +++|+|+...
T Consensus         3 ~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p-~~~~~~~~~~   78 (138)
T cd08862           3 FEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRP-GHSFTWTGPA   78 (138)
T ss_pred             EEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecC-CCEEEEEecC
Confidence            467789999999999999999999999999999988754326787766665432   356788999986 5678887653


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG-NSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g-~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                         +...+..++++.+.   +++  +|.+.+..++..+.+ .....+...++..+...|++||+.+|.
T Consensus        79 ---~~~~~~~~~~~~~~---~~~--~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  138 (138)
T cd08862          79 ---PGISAVHRHEFEAK---PDG--GVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ  138 (138)
T ss_pred             ---CCEEEEEEEEEEEc---CCC--cEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence               23466789999887   323  499999988875432 223456677788899999999998873

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.46  E-value=8.5e-12  Score=96.15  Aligned_cols=139  Identities=13%  Similarity=0.035  Sum_probs=101.7

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeE---e--ecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCce
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCT---M--KVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHI  111 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~---~--~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~  111 (192)
                      .+.+.++.|++|+++||+++.|+.++..|.|.+..++   .  ..+..++|+...+....+.  .....++.++++ +++
T Consensus         2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~~~   78 (150)
T cd07818           2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-NER   78 (150)
T ss_pred             eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-CcE
Confidence            5678889999999999999999999999999655432   1  1123368988777665421  233567788876 778


Q ss_pred             EEEEEEeCCCCc-ceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          112 LSFRVLGGDHRL-QNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNS----DDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       112 ~~Y~ileg~~p~-~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~----~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      +.|++..++ ++ ..+.+++++.|.   ++   +|.+.|+.+++.+.+..    ...+..+++..+..+|++||+.+|+
T Consensus        79 i~~~~~~~~-~~~~~~~~~~~~~~~---~~---gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  150 (150)
T cd07818          79 IEYELRFIK-PFEATNDVEFTLEPV---GG---GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK  150 (150)
T ss_pred             EEEEEEecC-CccccceEEEEEEEc---CC---ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence            999998532 34 478899999998   44   39999999998764322    1334456677788888999998874

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.40  E-value=2.4e-11  Score=91.25  Aligned_cols=138  Identities=14%  Similarity=0.045  Sum_probs=95.4

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecC-CCCceeEEEEEEEecCCceEEEEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISG-PPATTSTERLEMLDDENHILSFRVL  117 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G-~p~~~vkErL~~iD~~~~~~~Y~il  117 (192)
                      ...++.|++|+++||+++.|+.++..|.|.+..+....  .++|....+.+..+ .....+.++++++|+ ++++.|+..
T Consensus         2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~~   78 (141)
T cd07822           2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAWRGG   78 (141)
T ss_pred             eEEEEEecCCHHHHHHHHhccccccccChhheeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEEEec
Confidence            45678999999999999999999999999876654431  34677777766532 122467888999997 778999998


Q ss_pred             eCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          118 GGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN-SDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       118 eg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~-~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      .++.....+..++.|.|.   +++  +|.+.|...+....+. ........++..++..++.|+..+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~---~~~--~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E  141 (141)
T cd07822          79 LPFPGLLDGEHSFELEPL---GDG--GTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE  141 (141)
T ss_pred             CCCCcEeeEEEEEEEEEc---CCC--cEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence            876554567789999987   333  4888888766532211 1122334445556666666666654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.38  E-value=2.7e-11  Score=91.47  Aligned_cols=134  Identities=15%  Similarity=0.107  Sum_probs=97.8

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      ++.+++|++|++.||+++.|+.+.+.|.|.+.++++..|.   +.-..+....|.. .....++..+++ ++.+.|....
T Consensus         2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~---~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~~~~~   76 (139)
T cd07817           2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT---RSHWKAKGPAGLS-VEWDAEITEQVP-NERIAWRSVE   76 (139)
T ss_pred             eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC---ceEEEEecCCCCc-EEEEEEEeccCC-CCEEEEEECC
Confidence            3457899999999999999999999999999999887442   2222233332432 345566666666 5569999877


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSD----DDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~----~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      |.  + .+.+++.+.+.   +++  +|.+.+...++++.+...    ..+..+++..+...|++||+.||.
T Consensus        77 ~~--~-~~~~~~~f~~~---~~~--~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE~  139 (139)
T cd07817          77 GA--D-PNAGSVRFRPA---PGR--GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVET  139 (139)
T ss_pred             CC--C-CcceEEEEEEC---CCC--CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhhC
Confidence            64  3 67899999987   333  499999999998754432    234556677788999999999873

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.35  E-value=2.7e-11  Score=92.53  Aligned_cols=135  Identities=10%  Similarity=0.070  Sum_probs=101.8

Q ss_pred             EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeCC
Q 047053           41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGD  120 (192)
Q Consensus        41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~  120 (192)
                      -+++|++|++.||+++.|+.+.+.|.|.+.+++++++.+ .+...++...-+.-...+..++. +++ ++++++..++| 
T Consensus         3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~g-   78 (138)
T cd07813           3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAELVDG-   78 (138)
T ss_pred             EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEecCC-
Confidence            467899999999999999999999999999999987654 23334444432211123445554 666 67899999988 


Q ss_pred             CCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          121 HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       121 ~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                       +++.+.++.++.|.   ++|  +|.|.|...+++.-+.....+..+++......|+++++.++.
T Consensus        79 -~~~~~~g~w~~~p~---~~~--~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~  137 (138)
T cd07813          79 -PFKHLEGEWRFKPL---GEN--ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ  137 (138)
T ss_pred             -ChhhceeEEEEEEC---CCC--CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             67889999999998   434  499999999998654444556677788888888888888764

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.34  E-value=4.4e-11  Score=93.84  Aligned_cols=140  Identities=15%  Similarity=0.105  Sum_probs=100.7

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCC-CCCeEEEEEe-ecCCCCceeEEEEEEEecCCceEEEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVGSVRDVNI-ISGPPATTSTERLEMLDDENHILSFRV  116 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG-~vG~VR~~~~-~~G~p~~~vkErL~~iD~~~~~~~Y~i  116 (192)
                      .+.+++|++||+.||+++.|+.+.+.|.|.+.+++++++++ ++|+--.+.+ .+|.+..+..|+  .+|+..+++.+.-
T Consensus         3 ~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i~~~~   80 (146)
T cd08860           3 TDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTVRARR   80 (146)
T ss_pred             ceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEEEEEE
Confidence            45678999999999999999999999999999999876533 4553222223 234322333333  2677777777741


Q ss_pred             EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          117 LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE--GNSDDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       117 leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~--g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      . ...|+....++.+|.|.   ++|   |.|.+..+|+...  +.....+...++..+...|++||+.||+.|
T Consensus        81 ~-~~~p~~~m~~~W~f~~~---~~g---T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~~  146 (146)
T cd08860          81 V-ETGPFAYMNIRWEYTEV---PEG---TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAAA  146 (146)
T ss_pred             e-cCCCcceeeeeEEEEEC---CCC---EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhcC
Confidence            1 22479999999999998   444   9999999887653  233344667778889999999999999854

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.33  E-value=7.8e-11  Score=88.76  Aligned_cols=137  Identities=12%  Similarity=0.025  Sum_probs=97.0

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      ...+++|+||++.||+++.|+.+++.|.|.+..+......|  |+.+.+....++-...+..+++++|+ ++.+.|+...
T Consensus         2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~-~~~i~~~~~~   78 (139)
T cd07814           2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEP-PRRLVFTWAF   78 (139)
T ss_pred             eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcC-CCeEEEEecc
Confidence            35678999999999999999999999988633332221223  77776544321111356888999997 6789999998


Q ss_pred             CCC-CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          119 GDH-RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       119 g~~-p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      ++. +...+..++++.|.   ++   +|.+.|+..+.++.+. .......+...+...|++||+.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~---~~---~T~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~~E~  139 (139)
T cd07814          79 SDETPGPETTVTVTLEET---GG---GTRLTLTHSGFPEEDA-EQEAREGMEEGWTGTLDRLKALLEK  139 (139)
T ss_pred             cCCCCCCceEEEEEEEEC---CC---CEEEEEEEEccChHhH-HHHHHhCHhhHHHHHHHHHHHHhhC
Confidence            754 56678999999998   44   3999999887764321 2234444566678888999998873

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.29  E-value=3.6e-10  Score=82.21  Aligned_cols=134  Identities=18%  Similarity=0.075  Sum_probs=97.8

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCC-CCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGA-GEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGd-G~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      ..++.|++|+++||+++.|+.++..|.|.+.++++..+. +..|....+.+..+. ......++..+++ +..++|.+..
T Consensus         2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~~~   79 (141)
T cd07812           2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRVTG   79 (141)
T ss_pred             cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEEec
Confidence            356899999999999999999999999999999887653 367777766654121 1356788888887 7789999998


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC---CHHHHHHHHHHHHHHHHHHHHH
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN---SDDDTRLFVGTVVKLNLARLAD  181 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~---~~~~~~~~l~~~~~~~L~~L~~  181 (192)
                      ++.. ..+..++++.+.   +++  +|.+.|..+++++.+.   ....+..+++..+...+++|++
T Consensus        80 ~~~~-~~~~~~~~~~~~---~~~--~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T cd07812          80 GGGG-VDGTGEWRLEPE---GDG--GTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA  139 (141)
T ss_pred             CCCC-cceeEEEEEEEC---CCC--cEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence            7655 689999999998   331  3999999998876544   2233444455545555555543

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.28  E-value=1.6e-10  Score=88.35  Aligned_cols=139  Identities=17%  Similarity=0.172  Sum_probs=93.3

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCC--CCCCeEEEEEeec-CCCCceeEEEEEEEecCCceEEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGA--GEVGSVRDVNIIS-GPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGd--G~vG~VR~~~~~~-G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      .++++.|+||+++||+++.|+.++..|.|.........++  -++|....+.+.. |.+ ..+..+++++++ +++++|+
T Consensus         2 i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p-~~~l~~~   79 (144)
T cd07825           2 VSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEE-NRLIAWR   79 (144)
T ss_pred             eEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECC-CCEEEEE
Confidence            4678999999999999999999999998742222222332  2688888777653 333 356677888987 6779998


Q ss_pred             EEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Q 047053          116 VLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDD-DTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       116 ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~-~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      ..-...+......++.+.+.   ++|  +|.+.+...|......... .+......-++..|++|++.+|
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~---~~g--~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~  144 (144)
T cd07825          80 PGPAGQEPGGHRWRWELEPI---GPG--RTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLAE  144 (144)
T ss_pred             ccCCCCCCCceeEEEEEEEC---CCC--cEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence            65222334456678889987   334  4999988887754321110 0112235557788888888775

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.17  E-value=2e-09  Score=83.33  Aligned_cols=105  Identities=17%  Similarity=0.160  Sum_probs=76.4

Q ss_pred             EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeec-C-CCCCCeEEEEEeecCCCC-ceeEEEEEEEecCCceEEEEEE
Q 047053           41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKV-G-AGEVGSVRDVNIISGPPA-TTSTERLEMLDDENHILSFRVL  117 (192)
Q Consensus        41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~e-G-dG~vG~VR~~~~~~G~p~-~~vkErL~~iD~~~~~~~Y~il  117 (192)
                      -+..|++|+++||+++.|+..+..|.|.+.++++.+ | +.++|+.-++......+. ..+.-++.++++ ++.+.|.. 
T Consensus         5 ~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~-   82 (146)
T cd07824           5 TVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLLEVRA-   82 (146)
T ss_pred             EEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEEEEEE-
Confidence            356899999999999999999999999999998876 3 336777655443321121 244556667766 77899985 


Q ss_pred             eCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053          118 GGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP  156 (192)
Q Consensus       118 eg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~  156 (192)
                      +|++  . ...+++|.+.   ++|   |.|.+..+++.+
T Consensus        83 ~g~~--~-~~~~~~~~~~---~~g---t~vt~~~~~~~~  112 (146)
T cd07824          83 SGDL--E-GVGRWTLAPD---GSG---TVVRYDWEVRTT  112 (146)
T ss_pred             EEee--e-EEEEEEEEEc---CCC---EEEEEEEEEEcC
Confidence            5643  2 4788999987   443   999999888764

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.12  E-value=2.3e-09  Score=81.09  Aligned_cols=136  Identities=10%  Similarity=-0.062  Sum_probs=88.9

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC-CceeEEEEEEEecCCceEEEEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP-ATTSTERLEMLDDENHILSFRVL  117 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p-~~~vkErL~~iD~~~~~~~Y~il  117 (192)
                      .+.+..|++|+++||+++.|+.++..|.|.+.+++..++ +.......+.+. +.. .-...-++.++|+ ++.+.+...
T Consensus         3 ~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~   79 (144)
T cd05018           3 ISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP-NEYEATVKLKVG-PVKGTFKGKVELSDLDP-PESYTITGE   79 (144)
T ss_pred             eeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC-CeEEEEEEEEEc-cEEEEEEEEEEEEecCC-CcEEEEEEE
Confidence            346789999999999999999999999999998877643 212211122221 100 1123456666665 467888876


Q ss_pred             eC-CCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC---CHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          118 GG-DHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN---SDDDTRLFVGTVVKLNLARLADLA  183 (192)
Q Consensus       118 eg-~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~---~~~~~~~~l~~~~~~~L~~L~~~a  183 (192)
                      .. ......+.+++.+.|.   ++   +|.+.|+..+++.-..   ....+..+++..+..-+++|++.+
T Consensus        80 ~~~~~~~~~~~~~~~l~~~---~~---gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~  143 (144)
T cd05018          80 GKGGAGFVKGTARVTLEPD---GG---GTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI  143 (144)
T ss_pred             EcCCCceEEEEEEEEEEec---CC---cEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            53 2346789999999997   34   3999999998854221   233344455555666666676654

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.06  E-value=1.4e-08  Score=77.73  Aligned_cols=108  Identities=11%  Similarity=0.096  Sum_probs=84.0

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCC-C--CCCeEEEEEeecCC-CCceeEEEEEEEecCCceEEEE
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGA-G--EVGSVRDVNIISGP-PATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGd-G--~vG~VR~~~~~~G~-p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      +.+++|++|+++||+++.|..++..|.|.+.++++.+.+ |  .+|+.-.+.+..+. +. ..+-+++++++ ++.+++.
T Consensus         2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~p-~~~f~~~   79 (137)
T cd07820           2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVEP-PRRFVDE   79 (137)
T ss_pred             eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEcC-CCeEEEE
Confidence            357899999999999999999999999998888886432 3  56787777776432 22 34556777876 6779999


Q ss_pred             EEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC
Q 047053          116 VLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE  157 (192)
Q Consensus       116 ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~  157 (192)
                      .+.|  |+..+..+..+.|.   ++   +|.+.+..+|++|-
T Consensus        80 ~~~G--~~~~w~h~~~f~~~---~~---gT~vt~~v~~~~p~  113 (137)
T cd07820          80 QVSG--PFRSWRHTHRFEAI---GG---GTLMTDRVEYRLPL  113 (137)
T ss_pred             eccC--CchhCEEEEEEEEC---CC---ceEEEEEEEEeCCc
Confidence            8887  56678888889887   34   39999999999863

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=99.01  E-value=1.1e-08  Score=76.80  Aligned_cols=128  Identities=17%  Similarity=0.251  Sum_probs=84.2

Q ss_pred             EcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeCCCCcc
Q 047053           45 INTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQ  124 (192)
Q Consensus        45 I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~~p~~  124 (192)
                      |+||+++||+++.|+.+++.|.|.+.++++++.++. +..-.+....+........++....+ .+ +.+..++|  +++
T Consensus         1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~g--~~~   75 (130)
T PF03364_consen    1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDPP-ER-IRFEQISG--PFK   75 (130)
T ss_dssp             ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEECT-TT-EEEESSET--TEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEEe-ee-eeeeecCC--Cch
Confidence            689999999999999999999999999999876542 22223444432212344555554433 43 78888877  789


Q ss_pred             eeEEEEEEEeeecCCC--CeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047053          125 NYRSVTSVNDFISEET--GEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLA  180 (192)
Q Consensus       125 ~y~ati~v~p~~~~~~--g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~  180 (192)
                      .+.++.++.+.   ++  |...|.+.-.+.++++.+.....+..+++......|++|+
T Consensus        76 ~~~g~W~~~~~---~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (130)
T PF03364_consen   76 SFEGSWRFEPL---GGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR  130 (130)
T ss_dssp             EEEEEEEEEEE---TTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcEEEEEEEEC---CCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999998   33  1124555555556655555555555666666666666553

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>PRK10724 hypothetical protein; Provisional

Probab=98.81  E-value=1.9e-07  Score=74.38  Aligned_cols=139  Identities=9%  Similarity=0.057  Sum_probs=99.0

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEee-cCCCCceeEEEEEEEecCCceEEEEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNII-SGPPATTSTERLEMLDDENHILSFRV  116 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~-~G~p~~~vkErL~~iD~~~~~~~Y~i  116 (192)
                      ....++.|++|++++|+++.|..+.+.|.|.+.++++++-++. +.+..++.+ .|. ......|.. +++ ++++.+..
T Consensus        16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~-~~~a~l~v~~~g~-~~~f~srv~-~~~-~~~I~~~~   91 (158)
T PRK10724         16 QISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPG-QMTAAVDVSKAGI-SKTFTTRNQ-LTS-NQSILMQL   91 (158)
T ss_pred             eEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCC-EEEEEEEEeeCCc-cEEEEEEEE-ecC-CCEEEEEe
Confidence            5566789999999999999999999999999999988754321 223333332 122 124444544 454 45899999


Q ss_pred             EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          117 LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       117 leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      ++|  |++.+.+..++.|.   +++  +|.|....+|+.........+..+.+.....-+++..+.|+++.
T Consensus        92 ~~G--pF~~l~g~W~f~p~---~~~--~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~y  155 (158)
T PRK10724         92 VDG--PFKKLIGGWKFTPL---SQE--ACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVY  155 (158)
T ss_pred             cCC--ChhhccceEEEEEC---CCC--CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998  79999999999998   333  39999999998766555555555556666666666666666554

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.77  E-value=1.8e-07  Score=72.33  Aligned_cols=135  Identities=14%  Similarity=0.082  Sum_probs=83.6

Q ss_pred             EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCcee--EEEEEEEecCCceEEEEEEe
Q 047053           41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTS--TERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~v--kErL~~iD~~~~~~~Y~ile  118 (192)
                      -+.+|++|+++||+++.|+..+..|.|.+++.+.. |++..+  -+++++-|.-...+  +=++.++++.++++++....
T Consensus         3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~-~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g   79 (146)
T cd07823           3 NEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVE-GDDEYK--GTVKVKLGPISASFKGTARLLEDDEAARRAVLEATG   79 (146)
T ss_pred             ceEEecCCHHHHHHHhcCHHHHHhcCCCceecccc-CCCeEE--EEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEE
Confidence            35789999999999999999999999998887765 322111  12233222100011  22466666458888887664


Q ss_pred             CCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          119 GDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE---GNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       119 g~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~---g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      .+.   .--....++++.|.   ++   +|.|.|..+++..-   ......+....+.++...+++|++.+|
T Consensus        80 ~~~~~~g~~~~~~~~~l~~~---~~---gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e  145 (146)
T cd07823          80 KDARGQGTAEATVTLRLSPA---GG---GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA  145 (146)
T ss_pred             ecCCCcceEEEEEEEEEEec---CC---cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence            212   11246667778775   34   49999999766422   122233455556666667777777765

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.72  E-value=5.9e-07  Score=68.27  Aligned_cols=134  Identities=13%  Similarity=0.075  Sum_probs=82.8

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      .+.+++|+||+++||+++.|...+..|.+... +....|.+..|   .+.+.++ ......=++.++++ ++.+.|+...
T Consensus         3 i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g---~~~~~~~-~~~~~~~~i~~~~p-~~~l~~~~~~   76 (145)
T cd08898           3 IERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATG---EITYPGY-EHGVFPVTVVEVDP-PRRFSFRWHP   76 (145)
T ss_pred             eEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCccee---EEecCCC-CccceEEEEEEeCC-CcEEEEEecC
Confidence            45678999999999999999999999987532 22222222223   2334322 11234567888887 7789998754


Q ss_pred             CC----C---CcceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          119 GD----H---RLQNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       119 g~----~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      ..    .   .......++.|.+.   ++|   |.|.+.-. +........+.............|..|++.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~---~~g---T~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le  144 (145)
T cd08898          77 PAIDPGEDYSAEPSTLVEFTLEPI---AGG---TLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE  144 (145)
T ss_pred             CCcccccccCCCCceEEEEEEEec---CCc---EEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence            32    1   22345688899887   443   88888765 43221111112333455567788888888776

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.67  E-value=6.1e-07  Score=70.54  Aligned_cols=128  Identities=13%  Similarity=0.029  Sum_probs=87.5

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRV  116 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~i  116 (192)
                      -+..++.+|++|+++||+++.|+..+..|.+.. .     ++-.+|...++.+..... ....-+++++|+ ++.+.|+.
T Consensus        11 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~-~-----~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p-~~~l~~~~   82 (157)
T cd08899          11 ATLRFERLLPAPIEDVWAALTDPERLARWFAPG-T-----GDLRVGGRVEFVMDDEEG-PNATGTILACEP-PRLLAFTW   82 (157)
T ss_pred             eEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC-C-----CCcccCceEEEEecCCCC-CccceEEEEEcC-CcEEEEEe
Confidence            357788999999999999999999999999832 1     222355555555543101 345678888887 67899988


Q ss_pred             EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          117 LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       117 leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      ..++   .....++.|.+.   ++   +|.+.......+..     .....+.......|+.|++.++..
T Consensus        83 ~~~~---~~~~~~~~l~~~---~~---gT~v~~~~~~~~~~-----~~~~~~~~GW~~~L~~Lk~~~e~~  138 (157)
T cd08899          83 GEGG---GESEVRFELAPE---GD---GTRLTLTHRLLDER-----FGAGAVGAGWHLCLDVLEAALEGG  138 (157)
T ss_pred             cCCC---CCceEEEEEEEc---CC---CEEEEEEEeccCch-----hhhhhhcccHHHHHHHHHHHHcCC
Confidence            7654   345678888876   34   38877766654322     133344555778899999988864

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.60  E-value=3e-06  Score=64.96  Aligned_cols=134  Identities=13%  Similarity=0.026  Sum_probs=80.6

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCc--ccceeEeecCCCCC-CeEEEEEee-cCCCCceeEEEEEEEecCCceEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKN--FIRSCTMKVGAGEV-GSVRDVNII-SGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p--~v~s~~~~eGdG~v-G~VR~~~~~-~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      ..++..|+||+++||+++.+...+..|++  ... +...+.+..+ |..|..-.. +|.. -...=+++++++ ++++.|
T Consensus         2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v~e~~p-~~~l~~   78 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFT-NTTHEFDLRPGGRWRFVMHGPDGTD-YPNRIVFLEIEP-PERIVY   78 (139)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCc-ceEEEEEecCCCEEEEEEECCCCCE-ecceEEEEEEcC-CCEEEE
Confidence            46789999999999999999888888863  221 1111222223 443432222 2321 122346888987 778999


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      +...++.   ....++.+.|.   ++   +|.+.....+..++. ....+...+.......|++|++.+++
T Consensus        79 t~~~~~~---~~~v~~~~~~~---~~---gT~ltl~~~~~~~~~-~~~~~~~~~~~Gw~~~l~~L~~~l~~  139 (139)
T cd08894          79 DHGSGPP---RFRLTVTFEEQ---GG---KTRLTWRQVFPTAAE-RCEKIKFGAVEGNEQTLDRLAAYLAR  139 (139)
T ss_pred             EeccCCC---cEEEEEEEEEC---CC---CEEEEEEEEcCCHHH-HHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence            8855421   35678888887   44   388877765543211 01112333455677888888888764

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.52  E-value=7.2e-06  Score=61.43  Aligned_cols=130  Identities=14%  Similarity=-0.040  Sum_probs=79.9

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeC
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGG  119 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg  119 (192)
                      +.++.|+||+++||+++.|...+..|.+... +   .++-.+|.--.+...+. ....+.=+++++++ ++.+.|+...+
T Consensus         3 ~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~---~~~~~~G~~~~~~~~~~-~~~~~~~~v~~~~~-~~~l~~~~~~~   76 (136)
T cd08893           3 VYVTYIRATPEKVWQALTDPEFTRQYWGGTT-V---ESDWKVGSAFEYRRGDD-GTVDVEGEVLESDP-PRRLVHTWRAV   76 (136)
T ss_pred             EEEEEecCCHHHHHHHHcCchhhhheecccc-c---ccCCcCCCeEEEEeCCC-cccccceEEEEecC-CCeEEEEEecC
Confidence            5678999999999999999999999976521 1   22223343323333321 11133455677775 66787777643


Q ss_pred             CC----CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          120 DH----RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       120 ~~----p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      ..    +-.....++.+.+.   +++   |.+....+...+ +.   .....+..-+...|++|++.+|.
T Consensus        77 ~~~~~~~~~~~~v~~~l~~~---~~~---t~l~~~~~~~~~-~~---~~~~~~~~gw~~~l~~Lk~~~e~  136 (136)
T cd08893          77 WDPEMAAEPPSRVTFEIEPV---GDV---VKLTVTHDGFPP-GS---PTLEGVSGGWPAILSSLKTLLET  136 (136)
T ss_pred             CCcccCCCCCEEEEEEEEec---CCc---EEEEEEecCCCC-ch---hHHHhhhcCHHHHHHHHHHHhcC
Confidence            32    23467788888887   343   776666554322 11   23333455567788999998873

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.42  E-value=1.4e-05  Score=61.66  Aligned_cols=137  Identities=10%  Similarity=-0.047  Sum_probs=81.7

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCccc-ceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCceEEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFI-RSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v-~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      .+++.+++||+++||+++.+-..+..|...- -.+...+.|-.+|..-.+.+.  +|.. ..+.=++.++++ ++++.|+
T Consensus         2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~-~~~~g~~~ei~p-~~~l~~t   79 (142)
T cd07826           2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEE-MGFHGVYHEVTP-PERIVQT   79 (142)
T ss_pred             EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCE-ecceEEEEEEcC-CCEEEEE
Confidence            4678999999999999999988888886531 122233333333433334343  2221 133456777887 6678777


Q ss_pred             EEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          116 VLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       116 ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      ---.+.+-.....++.+.+.   ++|   |.+.....+..++. .+......+..-....|++|++.++
T Consensus        80 ~~~~~~~~~~s~v~~~l~~~---~~g---T~l~l~~~~~~~~~-~~~~~~~~~~~Gw~~~l~~L~~~l~  141 (142)
T cd07826          80 EEFEGLPDGVALETVTFTEL---GGR---TRLTATSRYPSKEA-RDGVLASGMEEGMEESYDRLDELLA  141 (142)
T ss_pred             eEecCCCCCceEEEEEEEEC---CCC---EEEEEEEEeCCHHH-HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            54332333345778888887   443   88777655543211 1112333455667778888887764

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.41  E-value=2.7e-05  Score=59.80  Aligned_cols=136  Identities=13%  Similarity=-0.005  Sum_probs=79.1

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcc--cceeEeecCCCCC-CeEEEEEe-ecCCCCceeEEEEEEEecCCceEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNF--IRSCTMKVGAGEV-GSVRDVNI-ISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~--v~s~~~~eGdG~v-G~VR~~~~-~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      ..++..++||+++||+++.|-..+..|...  --.+.....+-.+ |..+.... .+|.. ....=++.++|+ ++++.|
T Consensus         2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~g~~~~~~p-~~~l~~   79 (143)
T cd08900           2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPE-ITVEARYHDIVP-DERIVY   79 (143)
T ss_pred             EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCE-EeeeEEEEEecC-CceEEE
Confidence            357889999999999999998888888642  1112222222223 44444322 23321 133446778887 777877


Q ss_pred             EEEe--CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          115 RVLG--GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       115 ~ile--g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      +-..  ++.+......++.+.+.   ++|   |.+.-.......+..  +. ......-....|++|++.+++
T Consensus        80 t~~~~~~~~~~~~s~v~~~l~~~---~~g---T~l~~~~~~~~~~~~--~~-~~~~~~GW~~~l~~L~~~l~~  143 (143)
T cd08900          80 TYTMHIGGTLLSASLATVEFAPE---GGG---TRLTLTEQGAFLDGD--DD-PAGREQGTAALLDNLAAELER  143 (143)
T ss_pred             EEeeccCCccccceEEEEEEEEC---CCC---EEEEEEEEEeccccc--ch-hhhHHHHHHHHHHHHHHHHhC
Confidence            7642  22233345578888887   443   777766543221111  11 222344466678999988774

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.39  E-value=1.5e-05  Score=61.56  Aligned_cols=134  Identities=13%  Similarity=0.096  Sum_probs=76.1

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcc----cceeEeecCCCCCCeEEEEEee-cCCCCceeEEEEEEEecCCceEEE
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNF----IRSCTMKVGAGEVGSVRDVNII-SGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~----v~s~~~~eGdG~vG~VR~~~~~-~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      .+++.|+||+++||+++.+...+..|++-    +..+++.-..|  |..+..-.. +|.. -...=++.++|+ ++++.|
T Consensus         3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~G--G~~~~~~~~~~g~~-~~~~g~v~~i~p-~~~l~~   78 (146)
T cd08896           3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPG--GAFRTVMRGPDGEE-FPNPGCFLEVVP-GERLVF   78 (146)
T ss_pred             EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecC--cEEEEEEECCCCCE-ecceEEEEEEeC-CCEEEE
Confidence            57899999999999999998888888642    22222211123  544443212 2321 133456888987 777888


Q ss_pred             EEE--eCCCCc-ce-eEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          115 RVL--GGDHRL-QN-YRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       115 ~il--eg~~p~-~~-y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      +-.  ++..+. .. -..++.+.+.   ++|   |.+.....+..++ ..+.....-+..-....|++|++.++
T Consensus        79 t~~~~~~~~~~~~~~~~v~~~~~~~---~~g---T~Ltl~~~~~~~~-~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          79 TDALTPGWRPAEKPFMTAIITFEDE---GGG---TRYTARARHWTEA-DRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             EEeecCCcCCCCCCcEEEEEEEEec---CCc---EEEEEEEEeCCHH-HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            743  221121 11 4578888887   443   7776654443211 01111111124557788888888775

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=98.35  E-value=1.1e-05  Score=63.61  Aligned_cols=104  Identities=16%  Similarity=0.202  Sum_probs=74.9

Q ss_pred             EEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCC--ceeEEEEEEEecCCceEEEEEEeC
Q 047053           42 TQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPA--TTSTERLEMLDDENHILSFRVLGG  119 (192)
Q Consensus        42 ~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~--~~vkErL~~iD~~~~~~~Y~ileg  119 (192)
                      +-.|++|+++||+++.|+..+....|.+++.+.. |+. -=+.-++.+  |.-.  -..+=++..+|+.+++++...-.|
T Consensus         6 ~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~-g~e-~~~~v~l~i--g~l~~~~~g~~~~~~v~~~~~~~~i~g~G~   81 (146)
T COG3427           6 TFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETN-GDE-YTAKVKLKI--GPLKGTFSGRVRFVNVDEPPRSITINGSGG   81 (146)
T ss_pred             eEEecCCHHHHHHHhcCHHHHHhhcCCcceeeec-CCe-EEEEEEEee--cceeEEEEEEEEEccccCCCcEEEEEeecc
Confidence            4678999999999999999999999999998865 542 111111222  2111  123556667778888888888774


Q ss_pred             CC-CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC
Q 047053          120 DH-RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI  155 (192)
Q Consensus       120 ~~-p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~  155 (192)
                      .. .+-+..+.+.+.|.   ++|   |++.|.+..+.
T Consensus        82 ~~~g~~~~~~~v~l~~~---g~g---t~v~w~~~~~~  112 (146)
T COG3427          82 GAAGFADGTVDVQLEPS---GEG---TRVNWFADANV  112 (146)
T ss_pred             cccceeeeeeEEEEEEc---CCC---cEEEEEEEccc
Confidence            44 77788899999987   443   99999998664

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.31  E-value=7.5e-05  Score=57.64  Aligned_cols=133  Identities=14%  Similarity=-0.036  Sum_probs=78.1

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCccc-ceeEeecCCCCC-CeEEE-EEeecC------CCCceeEEEEEEEecCC
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFI-RSCTMKVGAGEV-GSVRD-VNIISG------PPATTSTERLEMLDDEN  109 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v-~s~~~~eGdG~v-G~VR~-~~~~~G------~p~~~vkErL~~iD~~~  109 (192)
                      ..+++.|+||+++||+++.|...+..|.+-- -.+.+...+-.+ |..+. +.+.++      .....+.=+++++++ +
T Consensus         2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p-~   80 (146)
T cd08895           2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVP-N   80 (146)
T ss_pred             EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcC-C
Confidence            5688999999999999999999988886521 122222222222 33332 222221      111133346888887 6


Q ss_pred             ceEEEEEEeC--CCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          110 HILSFRVLGG--DHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       110 ~~~~Y~ileg--~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      +++.|+..-.  ..+ .....++.+.+.   ++   +|.+.++...-+ .+    ........-....|++|++.++
T Consensus        81 ~~i~~~~~~~~~~~~-~~~~v~~~~~~~---~~---~T~lt~~~~~~~-~~----~~~~~~~~GW~~~l~~L~~~le  145 (146)
T cd08895          81 ERIVYTDVFDDPSLS-GEMTMTWTLSPV---SG---GTDVTIVQSGIP-DG----IPPEDCELGWQESLANLAALVE  145 (146)
T ss_pred             CEEEEEEEecCCCCC-ceEEEEEEEEec---CC---CEEEEEEEeCCC-ch----hhhhHHHHHHHHHHHHHHHHhc
Confidence            6788886422  122 345788888887   44   388888876432 21    1122344446667888887765

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=98.28  E-value=0.00012  Score=58.90  Aligned_cols=142  Identities=8%  Similarity=-0.016  Sum_probs=90.3

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC---CceeEEEEEEEecCCceEE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP---ATTSTERLEMLDDENHILS  113 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p---~~~vkErL~~iD~~~~~~~  113 (192)
                      ...-++..|++|+++||+++.|....+.|-|.+..+++++-.+.--.+-.+.+.-..|   ...+..+-...+.++..+.
T Consensus        41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~  120 (195)
T cd08876          41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVT  120 (195)
T ss_pred             EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEE
Confidence            4445667899999999999999999999999999999876533112233333332222   1233332222332234455


Q ss_pred             EEEEeCCC--C-------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          114 FRVLGGDH--R-------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA  183 (192)
Q Consensus       114 Y~ileg~~--p-------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~a  183 (192)
                      ..+.+.+.  |       ...+.+.+.+.|.   +++  .|.+.+...+++.-......+..+....+...|++|++.|
T Consensus       121 i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~---~~~--~t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~  194 (195)
T cd08876         121 ITLEAAPEALPEQKGYVRIKTVEGQWTFTPL---GNG--KTRVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQL  194 (195)
T ss_pred             EEeecCCccCCCCCCeEEceeceeeEEEEEC---CCC--eEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55544322  3       5677888899998   344  4999998888876555555555566666667777777665

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.26  E-value=6.5e-05  Score=57.10  Aligned_cols=128  Identities=12%  Similarity=0.152  Sum_probs=77.3

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccce--eEeecCCCCCCeEEEEEe--ecCCCCceeEEEEEEEecCCceEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRS--CTMKVGAGEVGSVRDVNI--ISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s--~~~~eGdG~vG~VR~~~~--~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      ..+++.|+||+++||+++.|-..+..|.+....  +...+.|-.+|..-.+.+  .+|.....+.=++.++++ ++++.|
T Consensus         2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p-~~~l~~   80 (133)
T cd08897           2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEP-HKLIEY   80 (133)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECC-CCEEEE
Confidence            357899999999999999998888889543211  111122323444433333  233211123456778887 788999


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      +..++      ...++.+.+.   ++|   |.+.-+  +...+..    .......-...+|++|++.++.
T Consensus        81 ~~~~~------~~v~~~l~~~---~~g---T~l~l~--~~~~~~~----~~~~~~~GW~~~l~~L~~~le~  133 (133)
T cd08897          81 TMEDG------REVEVEFTEE---GDG---TKVVET--FDAENEN----PVEMQRQGWQAILDNFKKYVES  133 (133)
T ss_pred             EcCCC------CEEEEEEEEC---CCC---EEEEEE--ECCCCCC----cHHHHHHHHHHHHHHHHHHhhC
Confidence            97532      3678888887   443   776644  3332211    1222344458889999988763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=98.16  E-value=6e-05  Score=61.37  Aligned_cols=139  Identities=13%  Similarity=0.105  Sum_probs=95.7

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeec--CCCCceeEEEEEEEecCCceEEE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIIS--GPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~--G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      ..++++++|++|++.||...+|+.+++.|.-.+.|+++.+-.  .   -+|....  |.-+.| +-+|+. |..+.+|.|
T Consensus        70 i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddk--r---SrW~~~ap~g~~v~W-ea~it~-d~~~e~I~W  142 (217)
T COG5637          70 IEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDK--R---SRWKANAPLGLEVEW-EAEITK-DIPGERIQW  142 (217)
T ss_pred             eEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCC--c---cceeEcCCCCceEEE-eehhhc-cCCCcEEee
Confidence            466788999999999999999999999999999999987432  1   3344432  221223 334553 566889999


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHhcccc
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFV----GTVVKLNLARLADLAMASFKS  189 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l----~~~~~~~L~~L~~~ae~~~~~  189 (192)
                      .-++|-  --.-.+.++|.+.  +++   .|.|.-..+|.+|-+........|+    +.-++.-|++.|...|.+..|
T Consensus       143 ~Sl~Ga--~v~NsG~VrF~~~--pg~---~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~q~s  214 (217)
T COG5637         143 ESLPGA--RVENSGAVRFYDA--PGD---STEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENGQPS  214 (217)
T ss_pred             ecCCCC--cCCCCccEEeeeC--CCC---ceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHccCcc
Confidence            999982  1134567888877  434   3899999999987654433233333    334677788888888775544

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=98.05  E-value=0.00029  Score=54.49  Aligned_cols=132  Identities=12%  Similarity=-0.031  Sum_probs=74.2

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCc-c-------cceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCce
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKN-F-------IRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHI  111 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p-~-------v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~  111 (192)
                      ..++.|+||+++||+++.+  .+..|++ .       ...|++.-..|  |..+. ...+|.  ....=++.++++ +++
T Consensus         3 ~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~~-~~~~g~--~~~~g~v~~v~p-~~~   74 (149)
T cd08891           3 RKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAG--GRWYE-IGEDGT--ECEWGTVLAWEP-PSR   74 (149)
T ss_pred             EEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCC--cEEEE-ecCCCc--EeceEEEEEEcC-CCE
Confidence            4678999999999999998  4667754 2       13344422223  54443 222342  223456788887 667


Q ss_pred             EEEEEEeCC--CCcc--eeEEEEEEEeeecCC-CCeeEEEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          112 LSFRVLGGD--HRLQ--NYRSVTSVNDFISEE-TGEVYCVVLESYVVDIPEGN--SDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       112 ~~Y~ileg~--~p~~--~y~ati~v~p~~~~~-~g~~~T~v~W~~~~~~~~g~--~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      +.|+-.-++  .+..  .-..++.+.+.   + +|   |.+.-....-...+.  .+.........--...|++|++.+|
T Consensus        75 l~~tw~~~~~~~~~~~~~t~vt~~l~~~---~~~g---T~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~  148 (149)
T cd08891          75 LVFTWQINADWRPDPDKASEVEVRFEAV---GAEG---TRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE  148 (149)
T ss_pred             EEEEeccCCCcCcCCCCceEEEEEEEEC---CCCC---eEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence            888765211  1111  34678888887   4 43   777655543322211  1122222233345667888888876


Q ss_pred             h
Q 047053          185 A  185 (192)
Q Consensus       185 ~  185 (192)
                      +
T Consensus       149 ~  149 (149)
T cd08891         149 K  149 (149)
T ss_pred             C
Confidence            4

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.04  E-value=0.00019  Score=54.84  Aligned_cols=129  Identities=13%  Similarity=0.021  Sum_probs=75.7

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      +..++.|+||+++||+++.+-..+..|++.-...++..|    |.+ .+.|....+  .+.=++.++++ ++++.|+...
T Consensus         2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~~G----g~~-~~~~~~~~~--~~~g~~~~~~p-~~~l~~~w~~   73 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRLEEG----KTV-TWDWEMYGA--SVPVNVLEIEP-NKRIVIEWGD   73 (136)
T ss_pred             eeEEEEecCCHHHHHHHhcCHHHhccccccCCCccccCC----CEE-EEEEEccCC--ceEEEEEEEcC-CCEEEEEecC
Confidence            346789999999999999999999887543233333322    433 344432222  22336777877 7789998754


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRL--FVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~--~l~~~~~~~L~~L~~~ae~  185 (192)
                      ++ +  .-..++.+.+.   ++|  +|.+.-.-.. .+.. ..+....  ....-....|++|++.+++
T Consensus        74 ~~-~--~s~v~~~l~~~---~~g--gT~ltl~~~~-~~~~-~~~~~~~~~~~~~GW~~~L~~L~~~le~  132 (136)
T cd08901          74 PG-E--PTTVEWTFEEL---DDG--RTFVTITESG-FPGT-DDEGLKQALGSTEGWTLVLAGLKAYLEH  132 (136)
T ss_pred             CC-C--CEEEEEEEEEC---CCC--cEEEEEEECC-CCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            31 1  24578888887   323  3776544332 2222 1111111  1233467778899888875

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=97.92  E-value=0.00087  Score=50.63  Aligned_cols=123  Identities=8%  Similarity=0.002  Sum_probs=74.3

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      ..++..|+||+++||+++.+-..+..|.....+.....|    |..+   +.+|    .+.=++.++++ +++++|+---
T Consensus         2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~~~G----G~~~---~~~g----~~~g~~~~i~p-~~~l~~~w~~   69 (126)
T cd08892           2 ISLTETFQVPAEELYEALTDEERVQAFTRSPAKVDAKVG----GKFS---LFGG----NITGEFVELVP-GKKIVQKWRF   69 (126)
T ss_pred             eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCceecCCCC----CEEE---EeCC----ceEEEEEEEcC-CCEEEEEEEc
Confidence            357899999999999999998888888754333333322    4443   3334    12345777876 6678777653


Q ss_pred             CCCCc-ceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          119 GDHRL-QNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       119 g~~p~-~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      .+.+- ..-..++.+.+.   ++|   |.+.-.-..-+..     .....-+++-...+++|++.++
T Consensus        70 ~~~~~~~~s~v~~~l~~~---~~g---T~ltl~~~g~~~~-----~~~~~~~GW~~~~~~~l~~~~~  125 (126)
T cd08892          70 KSWPEGHYSTVTLTFTEK---DDE---TELKLTQTGVPAG-----EEERTREGWERYYFESIKQTFG  125 (126)
T ss_pred             CCCCCCCcEEEEEEEEEC---CCC---EEEEEEEECCCCc-----hHHHHHhhHHHHHHHHHHHHhC
Confidence            22221 235577788876   343   7766555433321     1223335555567788887654

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=97.83  E-value=0.00027  Score=54.58  Aligned_cols=104  Identities=18%  Similarity=0.203  Sum_probs=62.6

Q ss_pred             EEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC-C-ceeEEEEEEEecCCceEEEEEEeC
Q 047053           42 TQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP-A-TTSTERLEMLDDENHILSFRVLGG  119 (192)
Q Consensus        42 ~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p-~-~~vkErL~~iD~~~~~~~Y~ileg  119 (192)
                      +.+|++|+++||+++.|...+....|.+++.+... +.--+.++ +.+  |.- . -..+=++.++|+.++. +..+-..
T Consensus         2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~~~~~~~-v~v--G~i~~~~~g~~~~~~~~~~~~~-~~~~~g~   76 (140)
T PF06240_consen    2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-DEYKGKVK-VKV--GPIKGTFDGEVRITEIDPPESY-TLEFEGR   76 (140)
T ss_dssp             EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TEEEEEEE-EES--CCCEEEEEEEEEEEEEETTTEE-EEEEEEE
T ss_pred             cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cEEEEEEE-EEe--ccEEEEEEEEEEEEEcCCCcce-Eeeeecc
Confidence            46899999999999999999999999999988764 21111111 111  210 0 1334566777775544 3444432


Q ss_pred             CC-CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC
Q 047053          120 DH-RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI  155 (192)
Q Consensus       120 ~~-p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~  155 (192)
                      +. .-.+..+.+++...   +++  .|.+.|+++++.
T Consensus        77 g~~~~~~~~~~~~~~~~---~~~--~T~v~~~~~~~~  108 (140)
T PF06240_consen   77 GRGGGSSASANITLSLE---DDG--GTRVTWSADVEV  108 (140)
T ss_dssp             ECTCCEEEEEEEEEEEC---CCT--CEEEEEEEEEEE
T ss_pred             CCccceEEEEEEEEEcC---CCC--CcEEEEEEEEEE
Confidence            22 23355566666665   333  299999998774

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=97.78  E-value=0.00048  Score=50.68  Aligned_cols=120  Identities=14%  Similarity=0.057  Sum_probs=70.9

Q ss_pred             cCChhhHhhhhcCCCCCCccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeCCC-Cc
Q 047053           46 NTPLSFVWPFVRDFTNPDKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDH-RL  123 (192)
Q Consensus        46 ~apa~~VW~~v~df~~~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~~-p~  123 (192)
                      +||+++||+++.+...+..|.. ........  .|  |.++... .+|.. ....=+++++++ ++++.|+.--++. +-
T Consensus         1 ~ap~e~Vw~a~t~~~~~~~W~~~~~~~~~~~--~G--g~~~~~~-~~g~~-~~~~~~v~~~~p-~~~i~~~~~~~~~~~~   73 (124)
T PF08327_consen    1 DAPPERVWEALTDPEGLAQWFTTSEAEMDFR--PG--GSFRFMD-PDGGE-FGFDGTVLEVEP-PERIVFTWRMPDDPDG   73 (124)
T ss_dssp             SSSHHHHHHHHHSHHHHHHHSEEEEEEEECS--TT--EEEEEEE-TTSEE-EEEEEEEEEEET-TTEEEEEEEEETSSSC
T ss_pred             CcCHHHHHHHHCCHhHHhhccCCCcceeeee--cC--CEEEEEe-cCCCC-ceeeEEEEEEeC-CEEEEEEEEccCCCCC
Confidence            6899999999999888899921 21122221  23  4454422 33311 123334888987 6679998654433 24


Q ss_pred             ceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHH
Q 047053          124 QNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPEGNSDDDTRLF-VGTVVKLNLARLADLAM  184 (192)
Q Consensus       124 ~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~g~~~~~~~~~-l~~~~~~~L~~L~~~ae  184 (192)
                      .....++.|.+.   ++   +|.+.-..+ ++.      ...... +.......|.+|++.+|
T Consensus        74 ~~~~v~~~~~~~---~~---~T~l~~~~~~~~~------~~~~~~~~~~gw~~~l~~L~~~lE  124 (124)
T PF08327_consen   74 PESRVTFEFEEE---GG---GTRLTLTHSGFPD------DDEEEEGMEQGWEQMLDRLKAYLE  124 (124)
T ss_dssp             EEEEEEEEEEEE---TT---EEEEEEEEEEEHS------HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEEEc---CC---cEEEEEEEEcCCc------cHHHHHHHHHHHHHHHHHHHHHhC
Confidence            466778888886   34   366554443 221      112221 45557777888888775

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.0029  Score=49.60  Aligned_cols=93  Identities=12%  Similarity=0.012  Sum_probs=60.5

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeE--eecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCT--MKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~--~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      -...++..|++|+++||+++.|-..+..|+. -..++  +.-|   .|....+...+| +.....-++.++++ ++++.|
T Consensus         8 ~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~g---g~~~~~~~~~~g-~~~~~~~~~~~v~p-~~rIv~   81 (149)
T COG3832           8 RTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTG---GGERVRFRGPDG-PVHSFEGEYLEVVP-PERIVF   81 (149)
T ss_pred             ceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecC---CceEEeeecCCC-CeeecceEEEEEcC-CcEEEE
Confidence            3566889999999999999999999888886 22121  2112   133334444433 22245667778887 666766


Q ss_pred             EEEeC--CCCcceeEEEEEEEee
Q 047053          115 RVLGG--DHRLQNYRSVTSVNDF  135 (192)
Q Consensus       115 ~ileg--~~p~~~y~ati~v~p~  135 (192)
                      +-.-.  +.+...-..++.+++.
T Consensus        82 tw~~~~~~~~~~~~~v~~~l~~~  104 (149)
T COG3832          82 TWDFDEDGEPFLKSLVTITLTPE  104 (149)
T ss_pred             EeccCCCCCcccCceEEEEEEEe
Confidence            66554  3355567788888886

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=97.21  E-value=0.0049  Score=48.55  Aligned_cols=135  Identities=12%  Similarity=0.129  Sum_probs=90.5

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeec-CCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIIS-GPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~-G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      +.+..|.-+|+++++++.|....+.+.|.+..+.+.+.++ ...+=.++.+= |. ..+..=|.+ +++..+.+.-.+++
T Consensus         5 ~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~-~~l~A~l~V~~k~i-~e~F~Trv~-~~~~~~~I~~~l~~   81 (146)
T COG2867           5 ERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNE-RELIAELDVGFKGI-RETFTTRVT-LKPTARSIDMKLID   81 (146)
T ss_pred             EeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCc-ceeEEEEEEEhhhe-eeeeeeeee-ecCchhhhhhhhhc
Confidence            4567889999999999999999999999999888887754 22333333321 21 123333333 44555577777788


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFK  188 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~  188 (192)
                      |  |++...++.++.|.   +++  .|.|.-..+|+...    ....+.++.++......+-+..++-|+
T Consensus        82 G--PFk~L~~~W~F~pl---~~~--~ckV~f~ldfeF~s----~ll~~~~g~~f~~~a~~mv~aF~kRA~  140 (146)
T COG2867          82 G--PFKYLKGGWQFTPL---SED--ACKVEFFLDFEFKS----RLLGALIGPVFKRLASKMVEAFEKRAK  140 (146)
T ss_pred             C--ChhhhcCceEEEEC---CCC--ceEEEEEEEeeehh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8  88999999999997   233  49999999988754    334444555666555555555555443

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=96.91  E-value=0.018  Score=44.09  Aligned_cols=91  Identities=11%  Similarity=0.051  Sum_probs=51.6

Q ss_pred             EcCChhhHhhhhcCCCCCCccC-cccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeCC-CC
Q 047053           45 INTPLSFVWPFVRDFTNPDKYK-NFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGD-HR  122 (192)
Q Consensus        45 I~apa~~VW~~v~df~~~~~w~-p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~-~p  122 (192)
                      ++||+++||+++.|-..+..|+ +......+..  |  |..|.+   .+    .+.=+..++|+ ++++.|+---.+ .+
T Consensus         1 f~ap~e~Vw~A~Tdp~~l~~w~~~~~~~~d~~~--G--G~f~~~---~~----~~~G~~~ev~p-p~rlv~tw~~~~~~~   68 (132)
T PTZ00220          1 FYVPPEVLYNAFLDAYTLTRLSLGSPAEMDAKV--G--GKFSLF---NG----SVEGEFTELEK-PKKIVQKWRFRDWEE   68 (132)
T ss_pred             CCCCHHHHHHHHcCHHHHHHHhcCCCccccCCc--C--CEEEEe---cC----ceEEEEEEEcC-CCEEEEEEecCCCCC
Confidence            4799999999999988777774 2211222222  2  444433   23    13346677877 666776654222 11


Q ss_pred             cceeEEEEEEEeeecCCCCeeEEEEEEEEE
Q 047053          123 LQNYRSVTSVNDFISEETGEVYCVVLESYV  152 (192)
Q Consensus       123 ~~~y~ati~v~p~~~~~~g~~~T~v~W~~~  152 (192)
                      -..-..++.+.+.   ++|  +|.+.-...
T Consensus        69 ~~~s~vt~~~~~~---~~g--~T~lt~~~~   93 (132)
T PTZ00220         69 DVYSKVTIEFRAV---EED--HTELKLTQT   93 (132)
T ss_pred             CCceEEEEEEEeC---CCC--cEEEEEEEe
Confidence            1123578888885   333  377665544

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=0.085  Score=41.30  Aligned_cols=109  Identities=19%  Similarity=0.277  Sum_probs=76.2

Q ss_pred             EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeec---CCCC-ceeEEEEEE--EecCCceEEE
Q 047053           41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIIS---GPPA-TTSTERLEM--LDDENHILSF  114 (192)
Q Consensus        41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~---G~p~-~~vkErL~~--iD~~~~~~~Y  114 (192)
                      ...+|+||.+.||+....-+++....|.-. +.+-+|+ +++..-++.++-   |.|. ..-+-|+++  +|+ ..+++=
T Consensus         6 ~~~~i~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~-~~~FtD   82 (153)
T COG4276           6 YRTTITAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN-GSRFTD   82 (153)
T ss_pred             EeeEecCCHHHHhhhhcCccHHHhcCCCcE-EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCC-cceeee
Confidence            456899999999999998888777666433 3333442 344445554432   3332 244566777  776 677888


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG  158 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g  158 (192)
                      ..+.||+|.-+..-+=++.+.   ++   +|.+.-+.+|++|.+
T Consensus        83 v~i~gPfp~~~WrHtH~F~~e---gg---~TvliD~Vsye~p~g  120 (153)
T COG4276          83 VCITGPFPALNWRHTHNFVDE---GG---GTVLIDSVSYELPAG  120 (153)
T ss_pred             eeecCCccceeeEEEeeeecC---CC---cEEEEeeEEeeccCc
Confidence            889998877677778888876   34   399999999998876

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=96.62  E-value=0.038  Score=43.77  Aligned_cols=61  Identities=21%  Similarity=0.316  Sum_probs=42.3

Q ss_pred             CChhhHhhhhc-CCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           47 TPLSFVWPFVR-DFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        47 apa~~VW~~v~-df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      -..++||.-+. .-.++..|.|.|.+|++++-. +..-.|.++|+ +   ..++|++... + ...+.|
T Consensus        18 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~-~~~~~R~v~fg-~---~~v~E~v~~~-~-~~~V~f   79 (149)
T PF08982_consen   18 LTREQLWRGLVLKARNPQLFVPGIDSCEVLSES-DTVLTREVTFG-G---ATVRERVTLY-P-PERVDF   79 (149)
T ss_dssp             --HHHHHHHHHHHHH-GGGT-TT--EEEEEEE--SSEEEEEEEET-T---EEEEEEEEEE-T-TTEEEE
T ss_pred             cCHHHHHHHHHHHHhChhhCccccCeEEEEecC-CCeEEEEEEEC-C---cEEEEEEEEe-C-CcEEEE
Confidence            45778999864 566799999999999997543 35788999994 3   5899998754 3 567888

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=96.27  E-value=0.38  Score=39.35  Aligned_cols=159  Identities=11%  Similarity=0.032  Sum_probs=88.9

Q ss_pred             hhhhhhcCCCCCCceeEEEEEEEcCChhhHhh-hhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec-CCC---Cc
Q 047053           23 TIKTYHTFPPSPNTCTSLITQKINTPLSFVWP-FVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS-GPP---AT   96 (192)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~v~~~I~apa~~VW~-~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~-G~p---~~   96 (192)
                      -++-+-.+-|...+.. -.+..|++|+++|+. ++.|....+.|-+.+..+++++. ++..--+..+.... +.|   ..
T Consensus        35 ~i~i~~r~~~~~~~~~-k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RD  113 (208)
T cd08868          35 GDVVYSRNVPGVGKVF-RLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRD  113 (208)
T ss_pred             CCEEEEEEcCCCceEE-EEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccc
Confidence            3455555555544433 345788999999986 56788999999999998887655 32111122222111 122   23


Q ss_pred             eeEEEEEEEecCCceEEEEEEeCC-C-------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCH-HHHHHH
Q 047053           97 TSTERLEMLDDENHILSFRVLGGD-H-------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSD-DDTRLF  167 (192)
Q Consensus        97 ~vkErL~~iD~~~~~~~Y~ileg~-~-------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~-~~~~~~  167 (192)
                      .+--|....++....+...-++.+ .       ....+.+-+.+.|.   +++...|.+.|....++- |... -.+-.+
T Consensus       114 fV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~---~~~~~~t~v~~~~~~Dp~-G~iP~~lvN~~  189 (208)
T cd08868         114 FVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPL---PNNPNKCNFTWLLNTDLK-GWLPQYLVDQA  189 (208)
T ss_pred             eEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEEC---CCCCCceEEEEEEEECCC-CCCcceeeehh
Confidence            443344334443333333333322 1       22456677788887   222236999999988864 3332 222233


Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q 047053          168 VGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       168 l~~~~~~~L~~L~~~ae~~  186 (192)
                      +....-..+++|++.++.|
T Consensus       190 ~~~~~~~~~~~Lr~~~~~~  208 (208)
T cd08868         190 LASVLLDFMKHLRKRIATL  208 (208)
T ss_pred             hHHHHHHHHHHHHHHHhhC
Confidence            4444556677888877654

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=96.08  E-value=0.42  Score=39.44  Aligned_cols=140  Identities=8%  Similarity=0.018  Sum_probs=82.1

Q ss_pred             EEEEEcCChhhHh-hhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec-CCC---CceeEEEEEEEecCCceEEE
Q 047053           41 ITQKINTPLSFVW-PFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS-GPP---ATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        41 v~~~I~apa~~VW-~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~-G~p---~~~vkErL~~iD~~~~~~~Y  114 (192)
                      .+..|++|+++++ .++-|....+.|-+.+.++++++- +...=-++.+...- +.+   ...+.-|....++.+..+..
T Consensus        53 ~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~  132 (209)
T cd08905          53 LEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCVLAG  132 (209)
T ss_pred             EEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEEEEE
Confidence            5679999999999 666789999999999999888654 21111123322111 111   23444444444443433222


Q ss_pred             EEEeCC-C-------CcceeEEEEEEEeeecCC-CCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          115 RVLGGD-H-------RLQNYRSVTSVNDFISEE-TGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       115 ~ileg~-~-------p~~~y~ati~v~p~~~~~-~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      ...+.+ +       ....+.+-+.+.|.  ++ .+  .|.+.|..-.||.-..+...+-.++-..-...|.+|++.++
T Consensus       133 ~s~~~~~~P~~~~~VR~~~~~~~w~l~p~--~~~~~--~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~  207 (209)
T cd08905         133 MATHFGLMPEQKGFIRAENGPTCIVLRPL--AGDPS--KTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMA  207 (209)
T ss_pred             EeecCCCCCCCCCeEEEEeeccEEEEEEC--CCCCC--ceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence            222222 1       23456677778887  22 13  59999999999644444444445555555667788887776

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=95.87  E-value=0.56  Score=36.93  Aligned_cols=131  Identities=15%  Similarity=0.076  Sum_probs=68.2

Q ss_pred             EEEEEEcCChhhHhhhhcCCCC----CCccCc---ccceeEeecCCCCCCeEEEE-Eee-cCCCC--------ceeEEEE
Q 047053           40 LITQKINTPLSFVWPFVRDFTN----PDKYKN---FIRSCTMKVGAGEVGSVRDV-NII-SGPPA--------TTSTERL  102 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~----~~~w~p---~v~s~~~~eGdG~vG~VR~~-~~~-~G~p~--------~~vkErL  102 (192)
                      ++++++++|+++||.++.|-.-    ......   .+.+++. .|+|  -.|+.. .+. +..|.        ....+|-
T Consensus         2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~-~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~   78 (159)
T PF10698_consen    2 EHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEV-DGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVTRT   78 (159)
T ss_pred             eEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEE-cCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEEEE
Confidence            4678999999999999998221    111111   2233322 2343  111111 111 23341        1222333


Q ss_pred             EEE---ecCCceEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC-CCCCHHHHHHHHHHHHHHHHHH
Q 047053          103 EML---DDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP-EGNSDDDTRLFVGTVVKLNLAR  178 (192)
Q Consensus       103 ~~i---D~~~~~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~-~g~~~~~~~~~l~~~~~~~L~~  178 (192)
                      +.+   ++..+..+|++.-...|. ...+++.+.|.   ++|   |.+....++... +-.. ..++.++...+...|+.
T Consensus        79 e~w~~~~~g~~~g~~~~~~~G~P~-~~~G~~~L~~~---~~g---t~~~~~g~v~v~VPlvG-gkiE~~v~~~~~~~~~~  150 (159)
T PF10698_consen   79 ETWTPLDDGRRTGTFTVSIPGAPV-SISGTMRLRPD---GGG---TRLTVEGEVKVKVPLVG-GKIEKAVAENLRKLLEA  150 (159)
T ss_pred             EEEecCCCCeEEEEEEEEecCceE-EEEEEEEEecC---CCC---EEEEEEEEEEEEEcccc-HHHHHHHHHHHHHHHHH
Confidence            334   556677777765433444 78999999996   443   888888776542 2222 22444444444444444


Q ss_pred             HHH
Q 047053          179 LAD  181 (192)
Q Consensus       179 L~~  181 (192)
                      ..+
T Consensus       151 e~~  153 (159)
T PF10698_consen  151 EQE  153 (159)
T ss_pred             HHH
Confidence            443

The function is not known.

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=95.84  E-value=0.67  Score=36.42  Aligned_cols=79  Identities=13%  Similarity=0.169  Sum_probs=58.1

Q ss_pred             hhcCCCCCCceeEEEEEEEcCChhhHhhhh-cCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEE
Q 047053           27 YHTFPPSPNTCTSLITQKINTPLSFVWPFV-RDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEML  105 (192)
Q Consensus        27 ~~~~~~~~~~~~~~v~~~I~apa~~VW~~v-~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~i  105 (192)
                      .|+=+.||..+.-.      -..+++|.-+ ..-..+..+.|.+.+|++++.++ --..|.++|+.    ..++|+++. 
T Consensus         3 ~~tvpIN~p~~~p~------LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~-~~l~Rel~f~~----~~v~e~vt~-   70 (141)
T cd08863           3 EHTVPINDPGNIPT------LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESG-TVLERELTFGP----AKIRETVTL-   70 (141)
T ss_pred             cEEEecCCCCCCCc------cCHHHHHhHHHhhhCCchhcccccceEEEEecCC-CEEEEEEEECC----ceEEEEEEe-
Confidence            45555566555211      5788999986 46777999999999999986653 25669999974    378999874 


Q ss_pred             ecCCceEEEEEEe
Q 047053          106 DDENHILSFRVLG  118 (192)
Q Consensus       106 D~~~~~~~Y~ile  118 (192)
                      ++ ...+.|.+-.
T Consensus        71 ~~-~~~v~f~~~~   82 (141)
T cd08863          71 EP-PSRVHFLQAD   82 (141)
T ss_pred             cC-CcEEEEEecC
Confidence            44 6679998876

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=95.69  E-value=0.96  Score=37.12  Aligned_cols=154  Identities=13%  Similarity=0.119  Sum_probs=92.2

Q ss_pred             hhhhhcCCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCC-----cee
Q 047053           24 IKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPA-----TTS   98 (192)
Q Consensus        24 ~~~~~~~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~-----~~v   98 (192)
                      ++.+....|.-.....-++..|++|++.+.+++.|....+.|.|.+..++..+..+..-.+-.+.+  ..|.     ..+
T Consensus        33 i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~--~~PwPv~~RD~v  110 (215)
T cd08877          33 IRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRV--DLPWPLSNREAV  110 (215)
T ss_pred             eEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEE--eCceEecceEEE
Confidence            344444444443444556789999999999999999889999998887766544321222333333  2331     122


Q ss_pred             E--EEEEEEecCCceEEEEE--EeCC----------C--------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053           99 T--ERLEMLDDENHILSFRV--LGGD----------H--------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP  156 (192)
Q Consensus        99 k--ErL~~iD~~~~~~~Y~i--leg~----------~--------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~  156 (192)
                      .  -.++.+++ +..+...+  +..+          +        ....+.+-+.++|.   ++|  .|.+.+....+|.
T Consensus       111 ~~~~~~~~~~~-~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~---~~~--~t~v~~~~~~DP~  184 (215)
T cd08877         111 FRGFGVDRLEE-NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI---SPT--KCYLRFVANVDPK  184 (215)
T ss_pred             EEEEEEeeecc-CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc---CCC--CeEEEEEEEcCCC
Confidence            1  11222323 33333222  2110          1        12456777888887   444  3888888888864


Q ss_pred             CC-CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          157 EG-NSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       157 ~g-~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      -. .+...+-.+...+....|.+|++.+++
T Consensus       185 g~~IP~~liN~~~k~~~~~~~~~l~k~~~~  214 (215)
T cd08877         185 MSLVPKSLLNFVARKFAGLLFEKIQKAAKN  214 (215)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44 455656666777788888999888764

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=95.36  E-value=1.3  Score=36.57  Aligned_cols=148  Identities=9%  Similarity=0.026  Sum_probs=81.2

Q ss_pred             CCCceeEEEEEEEcCChhhHh-hhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEee-cCCC---CceeEEEEEEEe
Q 047053           33 SPNTCTSLITQKINTPLSFVW-PFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNII-SGPP---ATTSTERLEMLD  106 (192)
Q Consensus        33 ~~~~~~~~v~~~I~apa~~VW-~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~-~G~p---~~~vkErL~~iD  106 (192)
                      +. ++. -++..+++|++.++ .++.|......|-+.+.++++++- +..-=-++.++.. .+.|   ...+.-|-..-+
T Consensus        47 ~~-~~f-k~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~  124 (209)
T cd08906          47 HG-KTF-ILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERR  124 (209)
T ss_pred             CC-cEE-EEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEec
Confidence            44 444 35678899999998 578999999999999999988654 2111111222221 1123   244444544444


Q ss_pred             cCCce-EEEEEEeCCC-CcceeE-EE-----EEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 047053          107 DENHI-LSFRVLGGDH-RLQNYR-SV-----TSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLAR  178 (192)
Q Consensus       107 ~~~~~-~~Y~ileg~~-p~~~y~-at-----i~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~  178 (192)
                      .+... +..++.-..+ +.++|. +.     +-+.|.+ .+.+  .|.+.|....+|--..+.-.+-.++....-.-|.+
T Consensus       125 ~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~-~~~~--~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~  201 (209)
T cd08906         125 RDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSA-SNPS--VCTFIWILNTDLKGRLPRYLIHQSLAATMFEFASH  201 (209)
T ss_pred             CCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECC-CCCC--ceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            44432 2222222222 233332 22     2333320 1233  59999999988643344444445555555566777


Q ss_pred             HHHHHHh
Q 047053          179 LADLAMA  185 (192)
Q Consensus       179 L~~~ae~  185 (192)
                      |++.++.
T Consensus       202 LR~~~~~  208 (209)
T cd08906         202 LRQRIRD  208 (209)
T ss_pred             HHHHHhh
Confidence            8777654

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=95.32  E-value=1.4  Score=36.55  Aligned_cols=120  Identities=16%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             CCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec--C--CCCceeEEEEEEEec
Q 047053           33 SPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS--G--PPATTSTERLEMLDD  107 (192)
Q Consensus        33 ~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~--G--~p~~~vkErL~~iD~  107 (192)
                      ..+...+  +.+|++|+++||+++.|...-+.|-+.++++++++- +....-++..+-..  .  .+...+.-+....+.
T Consensus        43 ~~~~~~g--e~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~  120 (205)
T cd08874          43 TYHGFLG--AGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEG  120 (205)
T ss_pred             CcceEEE--EEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECC
Confidence            3455665  458899999999999999999999999999998765 22333333332111  1  233333333333333


Q ss_pred             CCceEEEEEEeC-CCC--------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053          108 ENHILSFRVLGG-DHR--------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP  156 (192)
Q Consensus       108 ~~~~~~Y~ileg-~~p--------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~  156 (192)
                      +...+...-+.. .+|        ...+.+-..+.|.  .++|...|.+......++-
T Consensus       121 ~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~--~~~g~~~t~vty~~q~DPg  176 (205)
T cd08874         121 ELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPV--TVEGNQYTRVIYIAQVALC  176 (205)
T ss_pred             CcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEEC--ccCCCCcEEEEEEEEECCC
Confidence            333332322333 222        2345566677775  2232225889888888864

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=95.05  E-value=1.6  Score=35.92  Aligned_cols=139  Identities=6%  Similarity=-0.071  Sum_probs=80.4

Q ss_pred             EEE-cCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC---CceeEEEEEEEecCCceEEEEEEe
Q 047053           43 QKI-NTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP---ATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        43 ~~I-~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p---~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      ..+ ++|++.+++++.|...-..|-+.+..+++++--+.--.|....+....|   ...+--|...-++....+...-++
T Consensus        53 ~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~  132 (222)
T cd08871          53 AIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVK  132 (222)
T ss_pred             EEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEecccc
Confidence            344 7999999999999888899999888887765422112333343432222   234433433333312122111122


Q ss_pred             CC-CC-------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          119 GD-HR-------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       119 g~-~p-------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      .+ .|       ...+.+-+.+.|.   +++  .|.+.|....++--..+.-.+-.++....-..|++|++.+++.
T Consensus       133 ~~~~P~~~g~VR~~~~~~g~~i~p~---~~~--~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y  203 (222)
T cd08871         133 HKKYPPRKGFVRAISLLTGYLIRPT---GPK--GCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKY  203 (222)
T ss_pred             CCCCCCCCCeEEeEEEccEEEEEEC---CCC--CEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            11 22       2345666778887   333  4999999888864334444444555666667788888887654

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=94.37  E-value=0.78  Score=38.97  Aligned_cols=109  Identities=14%  Similarity=0.019  Sum_probs=66.1

Q ss_pred             EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec---CCCCceeEEEEEEE--ecCC-ceEE
Q 047053           41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS---GPPATTSTERLEML--DDEN-HILS  113 (192)
Q Consensus        41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~---G~p~~~vkErL~~i--D~~~-~~~~  113 (192)
                      ++..+++|+++|++++.|...-..|-+...++++++- +...+-++ +.+..   -.|...+.-+-...  +... ..+.
T Consensus        81 ~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~  159 (235)
T cd08873          81 VELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVA  159 (235)
T ss_pred             EEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEeccCCCCeEEEE
Confidence            4567999999999999999999999999999998763 22234333 33321   11223333322222  2211 2333


Q ss_pred             EEEEeCC-C-------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC
Q 047053          114 FRVLGGD-H-------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI  155 (192)
Q Consensus       114 Y~ileg~-~-------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~  155 (192)
                      ..-+..+ .       ....+.+-+.+.|.   ++|  .|.|.+....+|
T Consensus       160 ~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~---~~~--~t~VtY~~~~dP  204 (235)
T cd08873         160 FRSVTLPRVPQTPGYSRTEVACAGFVIRQD---CGT--CTEVSYYNETNP  204 (235)
T ss_pred             EeeeecccCCCCCCeEEEEEEeeeEEEEEC---CCC--cEEEEEEEEcCC
Confidence            3333311 1       34567788889997   444  488888777665

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=94.03  E-value=2.9  Score=34.34  Aligned_cols=150  Identities=13%  Similarity=0.032  Sum_probs=87.1

Q ss_pred             CCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCC-eEEEEEeecCCC---CceeEEEEEEEecC
Q 047053           33 SPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVG-SVRDVNIISGPP---ATTSTERLEMLDDE  108 (192)
Q Consensus        33 ~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG-~VR~~~~~~G~p---~~~vkErL~~iD~~  108 (192)
                      ++-.....+....++|++.+.+++.|...-..|-+.+.++++++-+...+ -+-.+.+.--.|   ...+--|-...|++
T Consensus        42 s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~  121 (207)
T cd08911          42 TGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEE  121 (207)
T ss_pred             CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCC
Confidence            34333333334459999999999999888889999888888876422112 222333322222   24666666667766


Q ss_pred             CceE--EEEEEeC-C-------CCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCH-HHHHHHHHHHHHHHHH
Q 047053          109 NHIL--SFRVLGG-D-------HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSD-DDTRLFVGTVVKLNLA  177 (192)
Q Consensus       109 ~~~~--~Y~ileg-~-------~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~-~~~~~~l~~~~~~~L~  177 (192)
                      +..+  ...-++. .       ..+..|.+.+.+.|.++.+++  +|.+.+.+-.+| .|... ..+-.+....+-.-|+
T Consensus       122 ~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~--~~~~~~~~~~dP-gG~IP~~lvN~~~~~~~~~~l~  198 (207)
T cd08911         122 NKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEP--GFEFVLTYFDNP-GVNIPSYITSWVAMSGMPDFLE  198 (207)
T ss_pred             CCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCC--CeEEEEEEEeCC-CCccCHHHHHHHHHhhccHHHH
Confidence            5432  1111222 1       145678899999987111122  477776665554 34333 3344455666677778


Q ss_pred             HHHHHHHh
Q 047053          178 RLADLAMA  185 (192)
Q Consensus       178 ~L~~~ae~  185 (192)
                      +|++++.+
T Consensus       199 ~l~~a~~~  206 (207)
T cd08911         199 RLRNAALK  206 (207)
T ss_pred             HHHHHHhc
Confidence            88887643

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=93.90  E-value=3.1  Score=34.22  Aligned_cols=139  Identities=9%  Similarity=0.027  Sum_probs=74.8

Q ss_pred             EEEEEcCChhhHhhhhcCCCCC--CccCcccceeEeecC-CCCCCeEEEEEee-c-C---CCCceeEEEEEEEecCC-ce
Q 047053           41 ITQKINTPLSFVWPFVRDFTNP--DKYKNFIRSCTMKVG-AGEVGSVRDVNII-S-G---PPATTSTERLEMLDDEN-HI  111 (192)
Q Consensus        41 v~~~I~apa~~VW~~v~df~~~--~~w~p~v~s~~~~eG-dG~vG~VR~~~~~-~-G---~p~~~vkErL~~iD~~~-~~  111 (192)
                      .+..+++++++|++++.|..+-  ..|-+.+.++++++- ++...-+|. ... . +   .+...+--|.....+++ ..
T Consensus        50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~  128 (208)
T cd08903          50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDGTIS  128 (208)
T ss_pred             EEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCceEE
Confidence            5678999999999999876554  799999999988765 432222332 111 0 1   12233332332233323 23


Q ss_pred             EEEEEEeCC-C-Cccee--------EEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047053          112 LSFRVLGGD-H-RLQNY--------RSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLAD  181 (192)
Q Consensus       112 ~~Y~ileg~-~-p~~~y--------~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~  181 (192)
                      +.+..++.+ . |-++|        -+.++..|.   +.+  .|.+.|....|+.-..+...+-.++-.....-|.+|++
T Consensus       129 i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~---~~~--~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~  203 (208)
T cd08903         129 SNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG---EPD--KTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTK  203 (208)
T ss_pred             EeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC---CCC--ceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHH
Confidence            333334442 1 22222        223333333   223  49999999989743344443434444444466677777


Q ss_pred             HHHh
Q 047053          182 LAMA  185 (192)
Q Consensus       182 ~ae~  185 (192)
                      ....
T Consensus       204 ~~~~  207 (208)
T cd08903         204 AVKA  207 (208)
T ss_pred             HHhh
Confidence            6543

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=93.49  E-value=3.5  Score=33.55  Aligned_cols=134  Identities=14%  Similarity=0.041  Sum_probs=79.0

Q ss_pred             EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCCC---CceeEEEEEEEecCCc--eEEE
Q 047053           41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGPP---ATTSTERLEMLDDENH--ILSF  114 (192)
Q Consensus        41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~p---~~~vkErL~~iD~~~~--~~~Y  114 (192)
                      ++.+|++++++|++.+.+..  ..|-+.+.++++++- +... .|-...+..-.|   ...+.-|....+.++.  .+.+
T Consensus        48 ~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~-~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~  124 (197)
T cd08869          48 ASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDT-EVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVE  124 (197)
T ss_pred             EEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCc-EEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEE
Confidence            45788999999999887653  789999889888654 2111 112222221112   2344444444333332  2233


Q ss_pred             EEEeC--CCC-----cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          115 RVLGG--DHR-----LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA  183 (192)
Q Consensus       115 ~ileg--~~p-----~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~a  183 (192)
                      .-++.  .+|     ...+.+-+-++|.   ++|  +|.|.+....|| -|....-..-..+.+.-..|++|++.+
T Consensus       125 ~Sv~~~~~~p~g~VR~~~~~~g~~i~p~---~~~--~t~vty~~~~Dp-~G~iP~wl~N~~~~~~~~~~~~l~~~~  194 (197)
T cd08869         125 TSVEHTEPVPLGGVRAVVLASRYLIEPC---GSG--KSRVTHICRVDL-RGRSPEWYNKVYGHLCARELLRIRDSF  194 (197)
T ss_pred             ECCcCCCCCCCCCEEEEEEeeeEEEEEC---CCC--CeEEEEEEEECC-CCCCCceeecchHhHHHHHHHHHHhhc
Confidence            33432  222     2345567778887   344  499999999885 455544444445677778888887754

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=92.53  E-value=4  Score=31.66  Aligned_cols=125  Identities=13%  Similarity=0.010  Sum_probs=69.6

Q ss_pred             hhcCCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC---CceeEEEEE
Q 047053           27 YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP---ATTSTERLE  103 (192)
Q Consensus        27 ~~~~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p---~~~vkErL~  103 (192)
                      +....+.......-.+.+|++|++.||+++.|......|-+.+.++++++-.+..-.+....+....|   ...+--+-.
T Consensus        29 y~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~  108 (193)
T cd00177          29 YTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRR  108 (193)
T ss_pred             EEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEE
Confidence            33334432333333567899999999999999888889999999988876532113444455543333   222222222


Q ss_pred             EEecCC-ceEEEEEEeCC-CCc-------ceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053          104 MLDDEN-HILSFRVLGGD-HRL-------QNYRSVTSVNDFISEETGEVYCVVLESYVVDIP  156 (192)
Q Consensus       104 ~iD~~~-~~~~Y~ileg~-~p~-------~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~  156 (192)
                      ..++++ ..+...-++.+ .|-       ..+.+-+.+.|.   +++  .|.+.+....++-
T Consensus       109 ~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~---~~~--~~~vt~~~~~D~~  165 (193)
T cd00177         109 RKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL---DPG--KTKVTYVLQVDPK  165 (193)
T ss_pred             EEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEEC---CCC--CEEEEEEEeeCCC
Confidence            223322 22222222221 111       123455667776   344  4999999888864

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]

Probab=91.13  E-value=3  Score=35.01  Aligned_cols=146  Identities=12%  Similarity=0.086  Sum_probs=92.3

Q ss_pred             CCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCC--ceeEEEEEEEecCCc
Q 047053           33 SPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPA--TTSTERLEMLDDENH  110 (192)
Q Consensus        33 ~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~--~~vkErL~~iD~~~~  110 (192)
                      +.++|+.+ ...+..+++.+++++++-...+.+.|.++++.++.-+.+-+.+-.+..  |.|.  ....-+++..++   
T Consensus        65 ~r~k~Y~e-rrligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeV--GFk~l~E~y~S~Vt~~~p---  138 (227)
T KOG3177|consen   65 NREKAYSE-RRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEV--GFKPLDERYTSNVTCVKP---  138 (227)
T ss_pred             hHHHHHHH-HhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEe--cCcccchhheeeeEEecc---
Confidence            34566643 467899999999999999999999999999888644311133333333  5441  223334443333   


Q ss_pred             eEEEEEEeCCCCcceeEEEEEEEeeecC-CCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047053          111 ILSFRVLGGDHRLQNYRSVTSVNDFISE-ETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFK  188 (192)
Q Consensus       111 ~~~Y~ileg~~p~~~y~ati~v~p~~~~-~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~  188 (192)
                      .++|.+.-..--+.......++.|.  . -.|  .|.+....+|+.........+.-|.+.+.....++..+.|.++.+
T Consensus       139 ~l~kt~~~d~rLF~~L~t~Wsf~pg--~~~p~--tc~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~g  213 (227)
T KOG3177|consen  139 HLTKTVCADGRLFNHLITIWSFKPG--PNIPR--TCTLDFSVSFEFKSLLHSQVATIFFDEVVKQMVNAFEQRARKLYG  213 (227)
T ss_pred             cceEEeeccccHHHhhhheeeeccC--CCCCC--eEEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3455554322234555666778886  2 123  488888888877555444555667788888888888888877654

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=88.52  E-value=14  Score=31.32  Aligned_cols=109  Identities=11%  Similarity=0.053  Sum_probs=64.3

Q ss_pred             EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecC-CC---CceeEEEEEEEecCCc---eE
Q 047053           41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISG-PP---ATTSTERLEMLDDENH---IL  112 (192)
Q Consensus        41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G-~p---~~~vkErL~~iD~~~~---~~  112 (192)
                      ++..+++|+++|++++.|...-..|-+.+.+|++++- +... .+..+....- .|   ...+.-+-...+.++.   .+
T Consensus        85 ~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii  163 (240)
T cd08913          85 VEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVI  163 (240)
T ss_pred             EEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEE
Confidence            4568999999999999999999999999999998754 3222 2444443221 12   2233222121221222   23


Q ss_pred             EEEEEeCC-C-------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC
Q 047053          113 SFRVLGGD-H-------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI  155 (192)
Q Consensus       113 ~Y~ileg~-~-------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~  155 (192)
                      ....+.-+ .       ...++.+-+.+.|.   ++|  .|.+.+....+|
T Consensus       164 ~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~---~~~--~t~vtY~~~~dP  209 (240)
T cd08913         164 ALRSVTLPTHPPTPEYTRGETLCSGFCIWEE---SDQ--LTKVSYYNQATP  209 (240)
T ss_pred             EEEEeecCCCCCCCCcEEeeecccEEEEEEC---CCC--cEEEEEEEEeCC
Confidence            33334322 2       23456678888887   444  488877665553

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=87.99  E-value=14  Score=30.60  Aligned_cols=137  Identities=8%  Similarity=-0.031  Sum_probs=82.7

Q ss_pred             ceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEee--cCCC---CceeEEEEEEEecCCc
Q 047053           36 TCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNII--SGPP---ATTSTERLEMLDDENH  110 (192)
Q Consensus        36 ~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~--~G~p---~~~vkErL~~iD~~~~  110 (192)
                      .+++  +.+|++++++|...+-|-  .+.|-+.+.++.+++--+  .....+.+.  .-.|   ...+.-|.-..+..+.
T Consensus        53 ~~r~--~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld--~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g  126 (204)
T cd08908          53 LWRT--TIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILD--SQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKG  126 (204)
T ss_pred             EEEE--EEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecC--CCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCC
Confidence            3454  468899999999998765  678988888877765421  112222222  1112   2344444444444444


Q ss_pred             eEEEEEEeCC---CCcc-----eeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047053          111 ILSFRVLGGD---HRLQ-----NYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL  182 (192)
Q Consensus       111 ~~~Y~ileg~---~p~~-----~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~  182 (192)
                      .+...+.+..   .|..     .+.+..-++|.   ++|  .|.+......|| -|.......-..+.+....|.+|++.
T Consensus       127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~---g~g--~t~vtyi~~~DP-gG~iP~W~~N~~g~~~~~~~~~~r~s  200 (204)
T cd08908         127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPC---GSG--KSKLTYMCRIDL-RGHMPEWYTKSFGHLCAAEVVKIRDS  200 (204)
T ss_pred             eEEEEEeecCcccCCcCceEEEEEeeEEEEEEC---CCC--cEEEEEEEEeCC-CCCCcHHHHhhHHHHHHHHHHHHHhh
Confidence            4433333221   2443     34555667787   444  488888888885 56666666666688888888888876


Q ss_pred             HH
Q 047053          183 AM  184 (192)
Q Consensus       183 ae  184 (192)
                      +.
T Consensus       201 f~  202 (204)
T cd08908         201 FS  202 (204)
T ss_pred             cc
Confidence            54

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=87.50  E-value=12  Score=31.85  Aligned_cols=37  Identities=16%  Similarity=0.396  Sum_probs=32.9

Q ss_pred             EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC
Q 047053           41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG   77 (192)
Q Consensus        41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG   77 (192)
                      ++..+++|++++.+++.|...-+.|-+.+.++++++-
T Consensus        82 ~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~q  118 (236)
T cd08914          82 VEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDW  118 (236)
T ss_pred             EEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEE
Confidence            4458899999999999999999999999999988754

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=83.93  E-value=22  Score=29.00  Aligned_cols=137  Identities=12%  Similarity=0.069  Sum_probs=78.0

Q ss_pred             EEE-cCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC-----CceeEEEEEEEe-cCCceEEEE
Q 047053           43 QKI-NTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP-----ATTSTERLEMLD-DENHILSFR  115 (192)
Q Consensus        43 ~~I-~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p-----~~~vkErL~~iD-~~~~~~~Y~  115 (192)
                      .++ ++|++.|.+++.|...-+.|-+.+.++++++-++..| .+.+...-..|     ...+--|....| +....+...
T Consensus        56 ~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~-~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~  134 (209)
T cd08870          56 GVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSG-TEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTK  134 (209)
T ss_pred             EEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCC-cEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEe
Confidence            455 7799999999999888889999888877764432112 22222211222     234444444444 223323332


Q ss_pred             EEeCC-------CCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          116 VLGGD-------HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA  183 (192)
Q Consensus       116 ileg~-------~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~a  183 (192)
                      .+..+       ..+..|.+.+.+.|.. .++|  +|.+...+-.+|.-......+-.++....-..|++|++++
T Consensus       135 sv~~~~~P~~~~vRv~~~~~~~~i~p~~-~~~~--~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~  206 (209)
T cd08870         135 GVPYPSVPRSGRKRVDDYESSLVIRAVK-GDGQ--GSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENAL  206 (209)
T ss_pred             CCcCCCCCCCCcEEEEEEEeEEEEEEec-CCCC--ceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33321       1356888889998861 1223  4777777777753334444444455555556667777665

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=83.08  E-value=22  Score=28.33  Aligned_cols=140  Identities=8%  Similarity=-0.120  Sum_probs=80.2

Q ss_pred             EEEEEcCChhh-HhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCC-C---CceeEEEEEEEe-cCCceEE
Q 047053           41 ITQKINTPLSF-VWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGP-P---ATTSTERLEMLD-DENHILS  113 (192)
Q Consensus        41 v~~~I~apa~~-VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~-p---~~~vkErL~~iD-~~~~~~~  113 (192)
                      .+..|.+++++ +=.++.|....+.|-+.+.++++++- +.+ ..|..+....-. |   ...+--|-...+ +....+.
T Consensus        49 ~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~  127 (206)
T smart00234       49 AVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNG-TVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVV  127 (206)
T ss_pred             EEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCC-CeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEE
Confidence            34677778887 44677888888999999888887654 221 345554443222 3   233333333233 2233333


Q ss_pred             EEEEeCC-CC-------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          114 FRVLGGD-HR-------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       114 Y~ileg~-~p-------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      ..-++.+ .|       ...+.+-+.+.|.   +++  .|.+.|....++--......+..++.......+..|++.+..
T Consensus       128 ~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~---~~~--~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~  202 (206)
T smart00234      128 DVSVTHPTSPPTSGYVRAENLPSGLLIEPL---GNG--PSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQK  202 (206)
T ss_pred             EEECCCCCCCCCCCceEEEEeceEEEEEEC---CCC--CeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHH
Confidence            3333322 12       2467778888887   444  399999888876433333444445555556666777666654


Q ss_pred             c
Q 047053          186 S  186 (192)
Q Consensus       186 ~  186 (192)
                      .
T Consensus       203 ~  203 (206)
T smart00234      203 H  203 (206)
T ss_pred             H
Confidence            3

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=82.65  E-value=25  Score=28.78  Aligned_cols=136  Identities=12%  Similarity=0.021  Sum_probs=76.2

Q ss_pred             EEEEc-CChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC---Ccee-EEEEEEEecCCceEEE--
Q 047053           42 TQKIN-TPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP---ATTS-TERLEMLDDENHILSF--  114 (192)
Q Consensus        42 ~~~I~-apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p---~~~v-kErL~~iD~~~~~~~Y--  114 (192)
                      ..++. ++++.+.+++.|...-..|-+.+.++.-...++  --|-.+.++--.|   ...+ .-+...+|.+...+..  
T Consensus        54 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~  131 (207)
T cd08910          54 FGVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVIL  131 (207)
T ss_pred             EEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCC--CEEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEE
Confidence            35666 799999999999888888988766642222222  1233343432222   2233 2223345544432211  


Q ss_pred             -EEEeCC--------CCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          115 -RVLGGD--------HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       115 -~ileg~--------~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                       ..++-+        ..+..|.+.+.+.|.   +++  +|.+.+.+..+|--..+.-.+-.+....+-.-|++|++++.
T Consensus       132 ~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~---~~~--~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka~~  205 (207)
T cd08910         132 ARSTSLPQLPEKPGVIRVKQYKQSLAIESD---GKK--GSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKACQ  205 (207)
T ss_pred             ecCCCCCCCCCCCCCEEEEEEEEEEEEEeC---CCC--ceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHHHh
Confidence             222221        145678888888887   333  48888888777532233333444455556666777777653

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
3kdh_A	190	Structure Of Ligand-Free Pyl2 Length = 190		2e-58
3nj0_A	193	X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Co		2e-58
3kaz_A	176	Crystal Structure Of Abscisic Acid Receptor Pyl2 Le		2e-58
3nmh_A	178	Crystal Structure Of The Abscisic Receptor Pyl2 In		2e-58
3nj1_A	193	X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabact		2e-58
3ujl_A	177	Crystal Structure Of Abscisic Acid Bound Pyl2 In Co		2e-58
3nmp_A	178	Crystal Structure Of The Abscisic Receptor Pyl2 Mut		2e-57
4dsc_A	188	Complex Structure Of Abscisic Acid Receptor Pyl3 Wi		6e-55
4dsb_A	186	Complex Structure Of Abscisic Acid Receptor Pyl3 Wi		7e-55
3oji_A	189	X-Ray Crystal Structure Of The Py13 -Pyrabactin Com		9e-55
3klx_A	209	Crystal Structure Of Native Abscisic Acid Receptor		2e-54
3k90_A	193	The Abscisic Acid Receptor Pyr1 In Complex With Abs		4e-45
3k3k_A	211	Crystal Structure Of Dimeric Abscisic Acid (Aba) Re		7e-45
3zvu_A	193	Structure Of The Pyr1 His60pro Mutant In Complex Wi		2e-44
3njo_A	194	X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Co		4e-44
3oqu_A	205	Crystal Structure Of Native Abscisic Acid Receptor		2e-40
3qrz_B	223	Crystal Structure Of Native Abscisic Acid Receptor		4e-39
3jrs_A	208	Crystal Structure Of (+)-Aba-Bound Pyl1 Length = 20		2e-36
3kdj_A	202	Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le		3e-36
3kay_A	178	Crystal Structure Of Abscisic Acid Receptor Pyl1 Le		3e-36
3jrq_B	186	Crystal Structure Of (+)-aba-bound Pyl1 In Complex		4e-36
3rt2_A	183	Crystal Structure Of Apo-Pyl10 Length = 183		1e-35
3uqh_A	191	Crystal Strcuture Of Aba Receptor Pyl10 (Apo) Lengt		1e-35
3rt0_C	183	Crystal Structure Of Pyl10-Hab1 Complex In The Abse		2e-35

>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2 Length = 190

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 133/160 (83%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
           YH F P P TCTSLITQ+I+ P S VWP +R F NP++YK+F++ C +  G G+VGSVR+
Sbjct: 25  YHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVRE 84
Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCV 146
           V +ISG PA+TSTERLE +DD++ +LSFRV+GG+HRL+NY+SVTSVN+F+++++G+VY V
Sbjct: 85  VTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTV 144
Query: 147 VLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           VLESY VDIPEGN+++DT++FV TVVKLNL +L   A ++
Sbjct: 145 VLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 184

>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex Length = 193

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 133/160 (83%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
           YH F P P TCTSLITQ+I+ P S VWP +R F NP++YK+F++ C +  G G+VGSVR+
Sbjct: 28  YHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVRE 87
Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCV 146
           V +ISG PA+TSTERLE +DD++ +LSFRV+GG+HRL+NY+SVTSVN+F+++++G+VY V
Sbjct: 88  VTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTV 147
Query: 147 VLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           VLESY VDIPEGN+++DT++FV TVVKLNL +L   A ++
Sbjct: 148 VLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 187

>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 Length = 176

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 133/160 (83%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
           YH F P P TCTSLITQ+I+ P S VWP +R F NP++YK+F++ C +  G G+VGSVR+
Sbjct: 13  YHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVRE 72
Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCV 146
           V +ISG PA+TSTERLE +DD++ +LSFRV+GG+HRL+NY+SVTSVN+F+++++G+VY V
Sbjct: 73  VTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTV 132
Query: 147 VLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           VLESY VDIPEGN+++DT++FV TVVKLNL +L   A ++
Sbjct: 133 VLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 172

>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex With Pyrabactin Length = 178

Iteration: 1
 Score =  221 bits (562), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 133/160 (83%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
           YH F P P TCTSLITQ+I+ P S VWP +R F NP++YK+F++ C +  G G+VGSVR+
Sbjct: 14  YHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVRE 73
Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCV 146
           V +ISG PA+TSTERLE +DD++ +LSFRV+GG+HRL+NY+SVTSVN+F+++++G+VY V
Sbjct: 74  VTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTV 133
Query: 147 VLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           VLESY VDIPEGN+++DT++FV TVVKLNL +L   A ++
Sbjct: 134 VLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 173

>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A Complex Length = 193

Iteration: 1
 Score =  221 bits (562), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 133/160 (83%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
           YH F P P TCTSLITQ+I+ P S VWP +R F NP++YK+F++ C +  G G+VGSVR+
Sbjct: 28  YHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVRE 87
Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCV 146
           V +ISG PA+TSTERLE +DD++ +LSFR++GG+HRL+NY+SVTSVN+F+++++G+VY V
Sbjct: 88  VTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRLKNYKSVTSVNEFLNQDSGKVYTV 147
Query: 147 VLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           VLESY VDIPEGN+++DT++FV TVVKLNL +L   A ++
Sbjct: 148 VLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 187

>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex With Type 2c Protein Phosphatase Abi2 Length = 177

Iteration: 1
 Score =  221 bits (562), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 133/160 (83%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
           YH F P P TCTSLITQ+I+ P S VWP +R F NP++YK+F++ C +  G G+VGSVR+
Sbjct: 14  YHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVRE 73
Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCV 146
           V +ISG PA+TSTERLE +DD++ +LSFRV+GG+HRL+NY+SVTSVN+F+++++G+VY V
Sbjct: 74  VTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTV 133
Query: 147 VLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           VLESY VDIPEGN+++DT++FV TVVKLNL +L   A ++
Sbjct: 134 VLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 173

>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant A93f In Complex With Pyrabactin Length = 178

Iteration: 1
 Score =  218 bits (554), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 132/160 (82%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
           YH F P P TCTSLITQ+I+ P S VWP +R F NP++YK+F++ C +  G G+VGSVR+
Sbjct: 14  YHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVRE 73
Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCV 146
           V +ISG P +TSTERLE +DD++ +LSFRV+GG+HRL+NY+SVTSVN+F+++++G+VY V
Sbjct: 74  VTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTV 133
Query: 147 VLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           VLESY VDIPEGN+++DT++FV TVVKLNL +L   A ++
Sbjct: 134 VLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 173

>pdb|4DSC|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With (+)-Aba In Spacegroup Of H32 At 1.95a Length = 188

Iteration: 1
 Score =  209 bits (533), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 133/168 (79%), Gaps = 8/168 (4%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKV-GAG----EV 81
           +HTFP SPNTCTSLI  +++ P   +W FVRDF NP+KYK+FI+SCT++V G G    +V
Sbjct: 19  HHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKV 78
Query: 82  GSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFI---SE 138
           G++R+V+++SG PA+TS E LE+LD+E  ILSFRVLGG+HRL NYRSVTSVN+F+    +
Sbjct: 79  GTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKD 138
Query: 139 ETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           +   VY VVLESY+VDIP+GN+++DTR+FV TVVK NL  LA ++ AS
Sbjct: 139 KKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVISTAS 186

>pdb|4DSB|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With (+)-Aba In Spacegroup Of I 212121 At 2.70a Length = 186

Iteration: 1
 Score =  209 bits (533), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 133/168 (79%), Gaps = 8/168 (4%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKV-GAG----EV 81
           +HTFP SPNTCTSLI  +++ P   +W FVRDF NP+KYK+FI+SCT++V G G    +V
Sbjct: 17  HHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKV 76
Query: 82  GSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFI---SE 138
           G++R+V+++SG PA+TS E LE+LD+E  ILSFRVLGG+HRL NYRSVTSVN+F+    +
Sbjct: 77  GTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKD 136
Query: 139 ETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           +   VY VVLESY+VDIP+GN+++DTR+FV TVVK NL  LA ++ AS
Sbjct: 137 KKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVISTAS 184

>pdb|3OJI|A Chain A, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex Length = 189

Iteration: 1
 Score =  209 bits (532), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 133/168 (79%), Gaps = 8/168 (4%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKV-GAG----EV 81
           +HTFP SPNTCTSLI  +++ P   +W FVRDF NP+KYK+FI+SCT++V G G    +V
Sbjct: 20  HHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKV 79
Query: 82  GSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFI---SE 138
           G++R+V+++SG PA+TS E LE+LD+E  ILSFRVLGG+HRL NYRSVTSVN+F+    +
Sbjct: 80  GTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKD 139
Query: 139 ETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           +   VY VVLESY+VDIP+GN+++DTR+FV TVVK NL  LA ++ AS
Sbjct: 140 KKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVISTAS 187

>pdb|3KLX|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl3 Length = 209

Iteration: 1
 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 133/168 (79%), Gaps = 8/168 (4%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKV-GAG----EV 81
           +HTFP SPNTCTSLI  +++ P   +W FVRDF NP+KYK+FI+SCT++V G G    +V
Sbjct: 40  HHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKV 99
Query: 82  GSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFI---SE 138
           G++R+V+++SG PA+TS E LE+LD+E  ILSFRVLGG+HRL NYRSVTSVN+F+    +
Sbjct: 100 GTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKD 159
Query: 139 ETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS 186
           +   VY VVLESY+VDIP+GN+++DTR+FV TVVK NL  LA ++ AS
Sbjct: 160 KKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVISTAS 207

>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic Acid Length = 193

Iteration: 1
 Score =  177 bits (448), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 114/160 (71%), Gaps = 3/160 (1%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVR 85
           +HT+   P +C+SL  Q+I+ P   VW  VR F  P  YK+FI+SC+++      VG  R
Sbjct: 22  FHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTR 81
Query: 86  DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYC 145
           DV +ISG PA TSTERL++LDDE  +  F ++GG+HRL NY+SVT+V+ F  E+   ++ 
Sbjct: 82  DVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRF--EKENRIWT 139
Query: 146 VVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185
           VVLESYVVD+PEGNS+DDTR+F  TVVKLNL +LA +A A
Sbjct: 140 VVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 179

>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid And Aba-Free Open-Lid Subunits Length = 211

Iteration: 1
 Score =  176 bits (446), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 117/165 (70%), Gaps = 3/165 (1%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVR 85
           +HT+   P +C+SL  Q+I+ P   VW  VR F  P  YK+FI+SC+++      VG  R
Sbjct: 40  FHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTR 99
Query: 86  DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYC 145
           DV +ISG PA TSTERL++LDDE  +  F ++GG+HRL NY+SVT+V+ F  E+   ++ 
Sbjct: 100 DVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRF--EKENRIWT 157
Query: 146 VVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFKST 190
           VVLESYVVD+PEGNS+DDTR+F  TVVKLNL +LA +A A  +++
Sbjct: 158 VVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMARNS 202

>pdb|3ZVU|A Chain A, Structure Of The Pyr1 His60pro Mutant In Complex With The Hab1 Phosphatase And Abscisic Acid Length = 193

Iteration: 1
 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 113/160 (70%), Gaps = 3/160 (1%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVR 85
           +HT+   P +C+SL  Q+I+ P   VW  VR F  P  YK FI+SC+++      VG  R
Sbjct: 22  FHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKPFIKSCSVEQNFEMRVGCTR 81
Query: 86  DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYC 145
           DV +ISG PA TSTERL++LDDE  +  F ++GG+HRL NY+SVT+V+ F  E+   ++ 
Sbjct: 82  DVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRF--EKENRIWT 139
Query: 146 VVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185
           VVLESYVVD+PEGNS+DDTR+F  TVVKLNL +LA +A A
Sbjct: 140 VVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 179

>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex Length = 194

Iteration: 1
 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 113/160 (70%), Gaps = 3/160 (1%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVR 85
           +HT+   P +C+SL  Q+I+ P   VW  VR F  P  YK+FI+SC+++      VG  R
Sbjct: 23  FHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTR 82
Query: 86  DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYC 145
           DV +ISG  A TSTERL++LDDE  +  F ++GG+HRL NY+SVT+V+ F  E+   ++ 
Sbjct: 83  DVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRF--EKENRIWT 140
Query: 146 VVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185
           VVLESYVVD+PEGNS+DDTR+F  TVVKLNL +LA +A A
Sbjct: 141 VVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 180

>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9 With Aba Length = 205

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 107/157 (68%), Gaps = 3/157 (1%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
           +H      N CTS + + I  PL  VW  VR F  P KYK F+  CT+ +G  E+GS+R+
Sbjct: 42  HHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTV-IGDPEIGSLRE 100
Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCV 146
           VN+ SG PATTSTERLE+LDDE HIL  +++GGDHRL+NY S+ +V+  I E  G    +
Sbjct: 101 VNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEIIE--GRAGTM 158
Query: 147 VLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
           V+ES+VVD+P+GN+ D+T  FV  +++ NL  LAD++
Sbjct: 159 VIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVS 195

>pdb|3JRS|A Chain A, Crystal Structure Of (+)-Aba-Bound Pyl1 Length = 208

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 2/161 (1%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVR 85
           +HT+      C+SL+ Q+I+ P   VW  VR F  P  YK+FI+SC +       VG  R
Sbjct: 44  FHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTR 103
Query: 86  DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDF-ISEETGEVY 144
           DVN+ISG PA TS ERL++LDD+  +  F + GG+HRL+NY+SVT+V+ F   EE   ++
Sbjct: 104 DVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIW 163
Query: 145 CVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185
            VVLESYVVD+PEGNS++DTRLF  TV++LNL +LA +  A
Sbjct: 164 TVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEA 204

>pdb|3KDJ|A Chain A, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 202

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 2/161 (1%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVR 85
           +HT+      C+SL+ Q+I+ P   VW  VR F  P  YK+FI+SC +       VG  R
Sbjct: 28  FHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTR 87
Query: 86  DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDF-ISEETGEVY 144
           DVN+ISG PA TS ERL++LDD+  +  F + GG+HRL+NY+SVT+V+ F   EE   ++
Sbjct: 88  DVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIW 147
Query: 145 CVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185
            VVLESYVVD+PEGNS++DTRLF  TV++LNL +LA +  A
Sbjct: 148 TVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEA 188

>pdb|3KAY|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl1 Length = 178

Iteration: 1
 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 2/161 (1%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVR 85
           +HT+      C+SL+ Q+I+ P   VW  VR F  P  YK+FI+SC +       VG  R
Sbjct: 14  FHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTR 73
Query: 86  DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDF-ISEETGEVY 144
           DVN+ISG PA TS ERL++LDD+  +  F + GG+HRL+NY+SVT+V+ F   EE   ++
Sbjct: 74  DVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIW 133
Query: 145 CVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185
            VVLESYVVD+PEGNS++DTRLF  TV++LNL +LA +  A
Sbjct: 134 TVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEA 174

>pdb|3JRQ|B Chain B, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 186

Iteration: 1
 Score =  147 bits (371), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 2/161 (1%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVR 85
           +HT+      C+SL+ Q+I+ P   VW  VR F  P  YK+FI+SC +       VG  R
Sbjct: 23  FHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTR 82
Query: 86  DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDF-ISEETGEVY 144
           DVN+ISG PA TS ERL++LDD+  +  F + GG+HRL+NY+SVT+V+ F   EE   ++
Sbjct: 83  DVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIW 142
Query: 145 CVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA 185
            VVLESYVVD+PEGNS++DTRLF  TV++LNL +LA +  A
Sbjct: 143 TVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEA 183

>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10 Length = 183

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
           +H      + C+S + + I  PL  VW  VR F  P KYK FI  C ++    EVGSVR+
Sbjct: 17  HHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVRE 76
Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVN-DFISEETGEVYC 145
           V++ SG PAT STE LE+LDD  HIL  R++GGDHRL+NY S  S++ + I  +TG    
Sbjct: 77  VDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTG---T 133
Query: 146 VVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL 182
           + +ES+VVD+PEGN+ ++T  FV  +++ NL  LAD+
Sbjct: 134 LAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADV 170

>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo) Length = 191

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
           +H      + C+S + + I  PL  VW  VR F  P KYK FI  C ++    EVGSVR+
Sbjct: 17  HHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVRE 76
Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVN-DFISEETGEVYC 145
           V++ SG PAT STE LE+LDD  HIL  R++GGDHRL+NY S  S++ + I  +TG    
Sbjct: 77  VDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTG---T 133
Query: 146 VVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL 182
           + +ES+VVD+PEGN+ ++T  FV  +++ NL  LAD+
Sbjct: 134 LAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADV 170

>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 183

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 27  YHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD 86
           +H      + C+S + + I  PL  VW  VR F  P KYK FI  C ++    EVGSVR+
Sbjct: 17  HHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVRE 76
Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVN-DFISEETGEVYC 145
           V++ SG PAT STE LE+LDD  HIL  R++GGDHRL+NY S  S++ + I  +TG    
Sbjct: 77  VDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTG---T 133
Query: 146 VVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL 182
           + +ES+VVD+PEGN+ ++T  FV  +++ NL  LAD+
Sbjct: 134 LAIESFVVDVPEGNTKEETCFFVEALIQSNLNSLADV 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	4e-73
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	1e-72
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	9e-72
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	2e-69
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	6e-63
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	2e-61
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	2e-56
2le1_A	151	Uncharacterized protein; structural genomics, nort	1e-25
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	2e-24
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	5e-20
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	4e-17
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	6e-17
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	4e-16
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	7e-15
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	1e-14
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	2e-14
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	6e-14
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	1e-13
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	2e-13
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	1e-10
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	3e-09
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04
1vjh_A	122	BET V I allergen family; structural genomics, cent	8e-04

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score =  218 bits (557), Expect = 4e-73
 Identities = 92/184 (50%), Positives = 125/184 (67%), Gaps = 3/184 (1%)

Query: 1   MNPNQTPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFT 60
           + P  +     LT EE S+L+ +I  +HT+   P +C+SL  Q+I+ P   VW  VR F 
Sbjct: 14  LVPRGSHMPSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFD 73

Query: 61  NPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGG 119
            P  YK+FI+SC+++      VG  RDV +ISG PA TSTERL++LDDE  +  F ++GG
Sbjct: 74  KPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGG 133

Query: 120 DHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARL 179
           +HRL NY+SVT+V+ F  E    ++ VVLESYVVD+PEGNS+DDTR+F  TVVKLNL +L
Sbjct: 134 EHRLTNYKSVTTVHRFEKE--NRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKL 191

Query: 180 ADLA 183
           A +A
Sbjct: 192 ATVA 195

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score =  217 bits (553), Expect = 1e-72
 Identities = 85/174 (48%), Positives = 118/174 (67%), Gaps = 2/174 (1%)

Query: 12  LTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRS 71
           LT +E ++L  +I  +HT+      C+SL+ Q+I+ P   VW  VR F  P  YK+FI+S
Sbjct: 29  LTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKS 88

Query: 72  CTMKVGA-GEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVT 130
           C +       VG  RDVN+ISG PA TS ERL++LDD+  +  F + GG+HRL+NY+SVT
Sbjct: 89  CNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVT 148

Query: 131 SVNDFISEET-GEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
           +V+ F  EE    ++ VVLESYVVD+PEGNS++DTRLF  TV++LNL +LA + 
Sbjct: 149 TVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASIT 202

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 3klx_A Length = 189

 Score =  214 bits (546), Expect = 9e-72
 Identities = 107/189 (56%), Positives = 144/189 (76%), Gaps = 10/189 (5%)

Query: 6   TPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKY 65
           TP    LT +E S L++ I+T+HTFP SPNTCTSLI  +++ P   +W FVRDF NP+KY
Sbjct: 1   TPYG--LTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKY 58

Query: 66  KNFIRSCTMKVGAG-----EVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGD 120
           K+FI+SCT++V        +VG++R+V+++SG PA+TS E LE+LD+E  ILSFRVLGG+
Sbjct: 59  KHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGE 118

Query: 121 HRLQNYRSVTSVNDFI---SEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLA 177
           HRL NYRSVTSVN+F+    ++   VY VVLESY+VDIP+GN+++DTR+FV TVVK NL 
Sbjct: 119 HRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQ 178

Query: 178 RLADLAMAS 186
            LA ++ AS
Sbjct: 179 NLAVISTAS 187

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score =  208 bits (531), Expect = 2e-69
 Identities = 107/180 (59%), Positives = 144/180 (80%)

Query: 4   NQTPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPD 63
           + +P+   LT EE   LE  IKTYH F P P TCTSLITQ+I+ P S VWP +R F NP+
Sbjct: 2   SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPE 61

Query: 64  KYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRL 123
           +YK+F++ C +  G G+VGSVR+V +ISG PA+TSTERLE +DD++ +LSFRV+GG+HRL
Sbjct: 62  RYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRL 121

Query: 124 QNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
           +NY+SVTSVN+F+++++G+VY VVLESY VDIPEGN+++DT++FV TVVKLNL +L   A
Sbjct: 122 KNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAA 181

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score =  192 bits (488), Expect = 6e-63
 Identities = 75/173 (43%), Positives = 107/173 (61%), Gaps = 3/173 (1%)

Query: 12  LTLEELSKLET-TIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIR 70
           +  +E  K+E+  IK +H      + C+S + + I  PL  VW  VR F  P KYK FI 
Sbjct: 1   MNGDETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFIS 60

Query: 71  SCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVT 130
            C ++    EVGSVR+V++ SG PAT STE LE+LDD  HIL  R++GGDHRL+NY S  
Sbjct: 61  RCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTI 120

Query: 131 SVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA 183
           S++       G+   + +ES+VVD+PEGN+ ++T  FV  +++ NL  LAD+ 
Sbjct: 121 SLHSE--TIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVT 171

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Length = 205

 Score =  189 bits (480), Expect = 2e-61
 Identities = 79/183 (43%), Positives = 115/183 (62%), Gaps = 5/183 (2%)

Query: 11  ALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIR 70
              +    +    ++T+H      N CTS + + I  PL  VW  VR F  P KYK F+ 
Sbjct: 26  GTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVS 85

Query: 71  SCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVT 130
            CT+ +G  E+GS+R+VN+ SG PATTSTERLE+LDDE HIL  +++GGDHRL+NY S+ 
Sbjct: 86  RCTV-IGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLKNYSSIL 144

Query: 131 SVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA--MASFK 188
           +V+       G    +V+ES+VVD+P+GN+ D+T  FV  +++ NL  LAD++  +AS  
Sbjct: 145 TVHP--EIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSERLASQD 202

Query: 189 STE 191
            T+
Sbjct: 203 ITQ 205

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151

 Score = 96.0 bits (238), Expect = 1e-25
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 9/143 (6%)

Query: 42  TQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVGSVRDVNIISGPPATTSTE 100
           + ++  P + VW  V DF+   ++   + + T++  +    G+ R     +        E
Sbjct: 7   SVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTE---EELVE 63

Query: 101 RLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNS 160
           RL   D+    L + +      + N+R+V  V         + +C V+ + + D     +
Sbjct: 64  RLVERDESARRLVYTMPDPPFPITNHRAVLEV-----VPRDDRHCTVVWTAMFDCSPETA 118

Query: 161 DDDTRLFVGTVVKLNLARLADLA 183
            +   +    V  + L  LA+  
Sbjct: 119 RELESVIGDGVFAVGLNALAERY 141

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} PDB: 3cnw_A Length = 146

 Score = 92.5 bits (229), Expect = 2e-24
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 12/146 (8%)

Query: 37  CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPAT 96
             +  + +I      VW  +  F +   +  +I S  +     E G VR +    G    
Sbjct: 2   AHTTTSMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLT----EGGRVRHLANPDGE--- 54

Query: 97  TSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP 156
           T  ERLE+ +D+    ++ ++     + NY S   V     +E  E    ++E      P
Sbjct: 55  TIIERLEVFNDKERYYTYSIMNAPFPVTNYLSTIQV-----KEGTESNTSLVEWSGTFTP 109

Query: 157 EGNSDDDTRLFVGTVVKLNLARLADL 182
              SD++    V  +    L  L   
Sbjct: 110 VAVSDEEAINLVHGIYSDGLKALQHA 135

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Length = 160

 Score = 81.3 bits (200), Expect = 5e-20
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 22/158 (13%)

Query: 42  TQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG--EVGSVRDVNIISGPPATTST 99
           +  ++ P+  VW  +R+F +     + I+SC    G G   VG+ R +N           
Sbjct: 7   SIVVDAPVERVWSRIRNFHDFSWAPSLIKSCKKVGGGGGYSVGARRLLNG-------EFL 59

Query: 100 ERLEMLDDENHILSFRVLGGD-----HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVD 154
           + L    +    + + +  G        + NY     +     ++T      V  S   +
Sbjct: 60  DTLIAYSEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDT----TFVEWSGSWE 115

Query: 155 IPEGNSDDDTRLFVGTVVKLNLARLADLAMASFKSTEE 192
                   +   ++ TV +  LA LA    +  + +E 
Sbjct: 116 SA----STEAVEYMNTVYRSLLADLAAEFTSESRRSEW 149

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score = 73.8 bits (181), Expect = 4e-17
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 11/141 (7%)

Query: 26  TYHTFPPSPNTCTSLITQ-KINTPLSFVWPFVRDFTN--PDKYKNFIRSCTMKVG-AGEV 81
            +H    + +    L T  +I               +         I+ C +  G  G V
Sbjct: 5   HHHLETEASSLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTV 64

Query: 82  GSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETG 141
           GS+   N +    A  + ER+E ++ + ++++FRV+ GD  ++ Y+S         +  G
Sbjct: 65  GSIVFWNYVHDGEAKVAKERIEAVEPDKNLITFRVIEGD-LMKEYKSFLLTIQVTPKPGG 123

Query: 142 EVYCVV-----LESYVVDIPE 157
               +V      E    ++  
Sbjct: 124 P-GSIVHWHLEYEKISEEVAH 143

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score = 73.0 bits (179), Expect = 6e-17
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 5/134 (3%)

Query: 45  INTPLSFVW-PFVRDFTN--PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTER 101
           ++  L  +W    +DF    P    + ++   +  G G VG++   N +     +   E 
Sbjct: 11  LSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREE 70

Query: 102 LEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVV--DIPEGN 159
           +   D+ +H +  +V+ G +  Q      +       E  +    V  SY    DI E  
Sbjct: 71  ITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKV 130

Query: 160 SDDDTRLFVGTVVK 173
           +   T       ++
Sbjct: 131 TPTKTSQSTLMYLR 144

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score = 71.2 bits (174), Expect = 4e-16
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 47  TPLSFVWPFVRDFTN--PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEM 104
            P      FV D  N  P      I+   +  G G  G+++ +    G        +++ 
Sbjct: 14  PPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDS 73

Query: 105 LDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVV 147
           +D EN+  S+ ++ GD        ++   +     +     ++
Sbjct: 74  IDKENYSYSYTLIEGDALGDTLEKIS--YETKLVASPSGGSII 114

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score = 68.1 bits (166), Expect = 7e-15
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 5/127 (3%)

Query: 41  ITQKINTPLS---FVWPFVRDFTN--PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPA 95
           I ++  +P++        V +          +  +S  +  G G VG+V  +  + G P 
Sbjct: 12  IVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPL 71

Query: 96  TTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI 155
           T    + + +D  N    + +  GD    N   V       +   G    + +  +    
Sbjct: 72  TYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGGGSKGKITVTYHPKPG 131

Query: 156 PEGNSDD 162
              N ++
Sbjct: 132 CTVNEEE 138

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score = 67.3 bits (164), Expect = 1e-14
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 4/99 (4%)

Query: 51  FVWPFVRDFTN--PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDE 108
               F+ D  N  P      I S     G G  G+++ ++   G P     +R++ +D  
Sbjct: 18  LFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHT 77

Query: 109 NHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVV 147
           N   S+ V+ G         +++  +     T     ++
Sbjct: 78  NFKYSYSVIEGGPVGDTLEKISN--EIKIVATPNGGSIL 114

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score = 66.6 bits (162), Expect = 2e-14
 Identities = 13/98 (13%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 51  FVWPFVRDFTN-PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDEN 109
                 +D      K    I+S  +  G G VG+++ +    G   +   ++++ +D+ N
Sbjct: 18  LYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEAN 77

Query: 110 HILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVV 147
               + ++GG    ++   ++   +           + 
Sbjct: 78  LGYDYSIVGGTGLPESLEKLS--FETKVVAGSGGGSIS 113

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score = 66.2 bits (161), Expect = 6e-14
 Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 44  KINTPLSFVWPFVRDFTN----PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTST 99
           ++      +W            PD          + +G G VG++ D+  + G       
Sbjct: 36  EVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEI-IGDGGVGTILDMTFVPGEFPHEYK 94

Query: 100 ERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVV 147
           E+  ++D+E+ +   +++ G +              +   TG+  CV+
Sbjct: 95  EKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVV--PTGKDSCVI 140

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score = 64.3 bits (156), Expect = 1e-13
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 4/113 (3%)

Query: 36  TCTSLITQKINTPLSFVWPFVRDFTN-PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP 94
           T     T  I  P       V D      K    I+S  +  G G  G+++ +  I G  
Sbjct: 5   TFQDEYTSTI-APAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGE 63

Query: 95  ATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVV 147
           +     ++E +D+ N   ++ ++GG         ++   +    E      + 
Sbjct: 64  SKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKIS--FETKLVEGANGGSIG 114

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score = 56.2 bits (135), Expect = 1e-10
 Identities = 17/146 (11%), Positives = 46/146 (31%), Gaps = 14/146 (9%)

Query: 48  PLSFVWPFVRDFTN-PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLD 106
           P        +D      K    I+S  +  G G  G+++ +  I     +    +L+ +D
Sbjct: 15  PAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAID 74

Query: 107 DENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRL 166
           + N   ++ ++GG+   ++   ++   +       +   +   +           +    
Sbjct: 75  EANLTYNYSIIGGEGLDESLEKIS--YESKILPGPDGGSIGKINVKFHTKGDVLSET--- 129

Query: 167 FVGTVVKLNLARLADLAMASFKSTEE 192
                      +     +  FK+ E 
Sbjct: 130 --------VRDQAKFKGLGLFKAIEG 147

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 8/35 (22%)

Query: 15 EELSKLETTIKTYHTFPPSPNTCTSLITQKINTPL 49
          + L KL+ ++K Y     + ++  +L    I   +
Sbjct: 20 QALKKLQASLKLY-----ADDSAPAL---AIKATM 46

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 5/51 (9%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 92  GPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGE 142
            P        +E +D     ++ ++ G +   + ++++           G+
Sbjct: 30  RPFEKNGKTEIEAVDLVKKTMTIQMSGSE-IQKYFKTLKGSIAVTPIGVGD 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	100.0
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	100.0
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	100.0
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	100.0
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	100.0
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	100.0
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	100.0
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.97
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.97
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	99.96
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	99.96
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	99.95
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	99.95
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	99.95
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	99.95
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	99.95
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	99.95
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	99.95
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	99.95
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	99.95
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.94
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	99.93
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.77
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.68
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.68
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.65
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.61
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.58
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.39
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.36
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.25
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.17
2leq_A	146	Uncharacterized protein; start domains, structural	99.11
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	99.03
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.99
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	98.98
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	98.95
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	98.94
2il5_A	171	Hypothetical protein; structural genomics, APC2365	98.87
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.86
2lcg_A	142	Uncharacterized protein; start domain, structural	98.82
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.79
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.78
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.76
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.73
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.71
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.66
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.65
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	98.65
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.65
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.62
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.61
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.6
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.59
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.57
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.54
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	98.51
3put_A	166	Hypothetical conserved protein; structural genomic	98.51
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.39
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	98.26
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	98.2
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.12
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	98.07
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	98.07
2luz_A	192	CALU16; structural genomics, northeast structural	97.97
3qsz_A	189	STAR-related lipid transfer protein; structural ge	97.76
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	97.48
2lio_A	136	Uncharacterized protein; structural genomics, nort	96.98
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	96.54
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	96.11
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	96.0
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	95.84
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	93.95
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	93.61
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	90.76
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	90.08

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=2.3e-44  Score=296.83  Aligned_cols=175  Identities=44%  Similarity=0.786  Sum_probs=158.8

Q ss_pred             CCCHHhhhchhHhhhhhhcCCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCC-CCCCeEEEEEe
Q 047053           11 ALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGA-GEVGSVRDVNI   89 (192)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGd-G~vG~VR~~~~   89 (192)
                      -||.+|.++|+..++-+|+|+|+||+|+..+.++|+||+++||++++||++++.|+|.|++|++++|+ |++|+||.|+|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~h~~~~~~c~~~v~~~I~ApadkVW~lv~Df~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~  107 (208)
T 3jrs_A           28 DLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNV  107 (208)
T ss_dssp             CCCHHHHHHHHHHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEECCTTCCCSTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhccCCCCCeEeEEEEEEEeCCHHHHHHHHhCcCChhHccccceEEEEecCCCCCCCeEEEEEe
Confidence            48999999999999999999999999999999999999999999999999999999999999999997 59999999999


Q ss_pred             ecCCCCceeEEEEEEEecCCceEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEec-----CCCCCCHHHH
Q 047053           90 ISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVD-----IPEGNSDDDT  164 (192)
Q Consensus        90 ~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~-----~~~g~~~~~~  164 (192)
                      .+|.|..+++|||+++|+++|+|+|+|++|++|+++|+++|+|.|.  ++++  +|.+.|++.|+     +|++..++++
T Consensus       108 ~~G~p~~~vkErL~~lDde~~~~sYsIieG~lpv~~Y~sti~V~p~--~~g~--~t~V~Wt~~fes~~~D~p~g~~~e~a  183 (208)
T 3jrs_A          108 ISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRF--EKEE--EEERIWTVVLESYVVDVPEGNSEEDT  183 (208)
T ss_dssp             CTTSSCCEEEEEEEEEETTTTEEEEEEEESSSSCTTCEEEEEEEEE--EC-------CEEEEEEEEEEEECCTTSCHHHH
T ss_pred             cCCCccceEEEEEEEEeccCCEEEEEEeeCCcceeeEEEEEEEEEc--cCCC--ccEEEEEEEEEEccCCCCCCCCHHHH
Confidence            9998888999999999999999999999999999999999999996  2232  47777877664     7899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc
Q 047053          165 RLFVGTVVKLNLARLADLAMASFKS  189 (192)
Q Consensus       165 ~~~l~~~~~~~L~~L~~~ae~~~~~  189 (192)
                      ..|++++|+.||++|++.+|+++++
T Consensus       184 ~~~~~~vy~~gL~~L~~~~e~~~~~  208 (208)
T 3jrs_A          184 RLFADTVIRLNLQKLASITEAMNRN  208 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999999999863

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=100.00  E-value=6.3e-44  Score=290.74  Aligned_cols=181  Identities=59%  Similarity=1.024  Sum_probs=165.6

Q ss_pred             CCCCHHhhhchhHhhhhhhcCCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEe
Q 047053           10 DALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNI   89 (192)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~   89 (192)
                      .-||.+|...|...+.-+|+|+|+||+|...++++|+||+++||++++||++++.|+|.|++|++++|+|++|+||.|+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~I~Apa~~vW~lv~df~~~~~w~p~I~s~e~~eGdg~vGsVR~~t~   87 (190)
T 3kl1_A            8 KGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTV   87 (190)
T ss_dssp             --CCHHHHHHHHHHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHHCTTCGGGTCSSEEEEEEEESSSSTTCEEEEEE
T ss_pred             CcCCHHHHhhhhHHHHHHhccCCCCCceeEEEEEEecCCHHHHHHHHhCCCChhHcccccCEEEEEcCCCCCCeEEEEEe
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCceeEEEEEEEecCCceEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHH
Q 047053           90 ISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVG  169 (192)
Q Consensus        90 ~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~  169 (192)
                      .+|.|..+++|||+++|+++|+|+|+|++|++++++|.+++++.+..++.++..+|.|.|++.|++|++..++++..|++
T Consensus        88 ~~G~p~~~vkErL~~iD~~~~~~sY~iieG~~~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g~~~e~~~~~~~  167 (190)
T 3kl1_A           88 ISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVD  167 (190)
T ss_dssp             CSSSSCEEEEEEEEEEETTTTEEEEEEEEESSSCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTTCCHHHHHHHHH
T ss_pred             cCCCccceEEEEEEEEeccCCEEEEEEEecCCccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCCCCHHHHHHHHH
Confidence            99988789999999999999999999999999999999999999852210122379999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccC
Q 047053          170 TVVKLNLARLADLAMASFKST  190 (192)
Q Consensus       170 ~~~~~~L~~L~~~ae~~~~~~  190 (192)
                      ++|+.||++|++.+|+++.+-
T Consensus       168 ~~~~~gL~~L~~~~e~~~~~~  188 (190)
T 3kl1_A          168 TVVKLNLQKLGVAATSAPMHD  188 (190)
T ss_dssp             HHHHHHHHHHHHHHHHSCC--
T ss_pred             HHHHHHHHHHHHHHhcccccc
Confidence            999999999999999998764

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=100.00  E-value=3.5e-43  Score=285.46  Aligned_cols=176  Identities=61%  Similarity=1.041  Sum_probs=160.6

Q ss_pred             CCCHHhhhchhHhhhhhhcCCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeec-CCCC----CCeEE
Q 047053           11 ALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKV-GAGE----VGSVR   85 (192)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~e-GdG~----vG~VR   85 (192)
                      -||.+|..+|...+.-+|+|.+.|++|+..+.++|+||+++||++++||++++.|+|+|++|++.+ |+|+    +|+||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~s~~~~~I~Ap~d~VWalVrdF~~p~~w~p~V~s~~~~e~Gdg~~~~~vGsVR   83 (189)
T 3oji_A            4 GLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIR   83 (189)
T ss_dssp             TCCHHHHHHHHHHHHHHSCCCCC-CEEEEEEEEEESSCHHHHHHHHSCTTCGGGTCTTEEEEEECCC----CCCSTTCEE
T ss_pred             ccCHHHHHHhHHHHHHhcccCCCCCccceeEEEEEcCCHHHHHHHHhCCCChhhCccccceEEEEecCCCCccCCCCcEE
Confidence            489999999999999999999999999999999999999999999999999999999999999988 8875    99999


Q ss_pred             EEEeecCCCCceeEEEEEEEecCCceEEEEEEeCCCCcceeEEEEEEEeeecCCCC---eeEEEEEEEEEecCCCCCCHH
Q 047053           86 DVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETG---EVYCVVLESYVVDIPEGNSDD  162 (192)
Q Consensus        86 ~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g---~~~T~v~W~~~~~~~~g~~~~  162 (192)
                      .|+|.+|.|..+++|||+++|+++|+|+|+|++|++|+++|+++++|.|....++|   .++|+++|++.+++|+|..++
T Consensus        84 ~ltl~~G~P~~~i~ErL~~lDde~~~~sY~Iieg~~pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~t~e  163 (189)
T 3oji_A           84 EVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEE  163 (189)
T ss_dssp             EEEECSSSSBSEEEEEEEEEETTTTEEEEEEEECSBSSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTSCHH
T ss_pred             EEEecCCCcCceEEEEEEEEeccCCEEEEEEEecCCccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCCCHH
Confidence            99999998888999999999999999999999999999999999999997221144   468999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          163 DTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       163 ~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      ++..|++++|+.||++|++.+|+.
T Consensus       164 ~~~~~v~~v~~~gL~~L~~~~e~~  187 (189)
T 3oji_A          164 DTRMFVDTVVKSNLQNLAVISTAS  187 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999973

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=100.00  E-value=3.3e-43  Score=285.00  Aligned_cols=165  Identities=44%  Similarity=0.747  Sum_probs=154.0

Q ss_pred             HhhhhhhcCCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCCCCceeEE
Q 047053           22 TTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGPPATTSTE  100 (192)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~p~~~vkE  100 (192)
                      ..+.-+|+|+|+||+|+..++++|+||+++||++++||+++++|+|.|++| ..+| +|++|+||.|+|.+|.|..+++|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~~I~Apa~~VW~~v~df~~l~~w~P~V~s~-~~eG~~ggvGsvR~lt~~~G~p~~~vkE   90 (183)
T 3rt2_A           12 EYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRC-VVQGKKLEVGSVREVDLKSGLPATKSTE   90 (183)
T ss_dssp             HHHHHHSCCCCSTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEE-EESSSCCCTTCEEEEEECCSSTTCEEEE
T ss_pred             HHHHHhhccCCCCCceEEEEEEEEeCCHHHHHHHHhCcCchhhcCccceEE-EeeCCCCCCCcEEEEEeCCCCccceEEE
Confidence            678999999999999999999999999999999999999999999999999 5679 77999999999999988789999


Q ss_pred             EEEEEecCCceEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047053          101 RLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLA  180 (192)
Q Consensus       101 rL~~iD~~~~~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~  180 (192)
                      ||+++|+++|+|+|+|++|++||++|.++|+|.|.  +++|..+|.|.|+++|+++++..++++..|++++|+.||++|+
T Consensus        91 rL~~~D~~~~~~sY~Iieg~lp~~~y~ati~v~p~--~~dG~~gt~V~Ws~~fd~~~g~~~e~~~~~~~~i~~~~L~~L~  168 (183)
T 3rt2_A           91 VLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSE--TIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLA  168 (183)
T ss_dssp             EEEEEETTTTEEEEEEEEESCSCTTCEEEEEEEEE--EETTEEEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCEEEEEEecCCcceeEEEEEEEEEEe--cCCCCCCEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998  2144236999999999999999999999999999999999999


Q ss_pred             HHHHhcccc
Q 047053          181 DLAMASFKS  189 (192)
Q Consensus       181 ~~ae~~~~~  189 (192)
                      +.+|+++..
T Consensus       169 ~~~e~~~~~  177 (183)
T 3rt2_A          169 DVTERLQAE  177 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhh
Confidence            999999864

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=100.00  E-value=8.7e-43  Score=286.72  Aligned_cols=165  Identities=46%  Similarity=0.804  Sum_probs=155.4

Q ss_pred             HhhhhhhcCCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEE
Q 047053           22 TTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTER  101 (192)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkEr  101 (192)
                      ..+..+|+|+|+||+|..+|..+|+|||++||++++||+++.+|+|.|++|++ +|+|++|+||.|+|.+|.|..+++||
T Consensus        37 ~~~~~~~~h~p~~~k~~~~V~~~I~ApadkVW~lV~Df~~l~kW~P~V~s~ev-eGdg~vGsVR~vt~~~G~p~~~vkEr  115 (205)
T 3oqu_A           37 QYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTV-IGDPEIGSLREVNVKSGLPATTSTER  115 (205)
T ss_dssp             CHHHHHTCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEEC-CSSCCTTCEEEEEECTTSSCSEEEEE
T ss_pred             HHHHHHHhcCCCCcEEEEEEeeEEcCCHHHHHHHHhCcCChhHcCccceEEEe-eCCCCCCcEEEEEEcCCCccceEEEE
Confidence            78999999999999999999999999999999999999999999999999986 68889999999999999888899999


Q ss_pred             EEEEecCCceEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 047053          102 LEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLAD  181 (192)
Q Consensus       102 L~~iD~~~~~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~  181 (192)
                      |+++|+++|+|+|+|++|++||++|.++|+|.|.  +++|..+|+++|++.+++|++..++++..|++++|+.||++|++
T Consensus       116 L~~lDde~~~~sYsIieG~lpv~~Y~ati~V~p~--~~dG~~~T~v~ws~~~D~p~g~t~e~~~~~v~~v~~~gL~~L~~  193 (205)
T 3oqu_A          116 LELLDDEEHILGIKIIGGDHRLKNYSSILTVHPE--IIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLAD  193 (205)
T ss_dssp             EEEEETTTTEEEEEEEEESSSCTTCEEEEEEEEE--CCCC-CEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCEEEEEEEecCcceeEEEEEEEEEEc--cCCCCceEEEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998  33454589999999999999999999999999999999999999


Q ss_pred             HHHhcccc
Q 047053          182 LAMASFKS  189 (192)
Q Consensus       182 ~ae~~~~~  189 (192)
                      .+|+++..
T Consensus       194 ~~e~~~~~  201 (205)
T 3oqu_A          194 VSERLASQ  201 (205)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhhhc
Confidence            99999864

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=100.00  E-value=5.9e-43  Score=288.88  Aligned_cols=179  Identities=47%  Similarity=0.816  Sum_probs=161.2

Q ss_pred             CCCCCCCCCHHhhhchhHhhhhhhcCCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCC-CCCe
Q 047053            5 QTPSSDALTLEELSKLETTIKTYHTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVGS   83 (192)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG-~vG~   83 (192)
                      ...-..-||.+|.++|+..+.-+|+|+|+||+|...+.++|+||+++||++++||++++.|+|.|++|++++|+| ++|+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~c~~~v~~~I~ApadkVW~lv~dF~~l~~w~p~V~s~e~~eGd~g~vGs   97 (211)
T 3k3k_A           18 GSHMPSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGC   97 (211)
T ss_dssp             ---CCSSCCHHHHHHHHHHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCSSEEEEECCTTCCCCTTC
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCeEeEEEEEEEcCCHHHHHHHHhCcCChhHcCccceEEEEecCCCCCCCc
Confidence            334445689999999999999999999999999999999999999999999999999999999999999998974 8999


Q ss_pred             EEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEe-----cCCCC
Q 047053           84 VRDVNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVV-----DIPEG  158 (192)
Q Consensus        84 VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~-----~~~~g  158 (192)
                      ||+|+|.+|.|..+++|||+++|+++|+|+|+|++|++|+++|.++|+|.|.   ++|   + +.|++.|     ++|++
T Consensus        98 VR~lt~~~G~p~~~vkErL~~lDd~~~~~sYsIieg~lpv~~Y~sti~V~p~---~~g---g-V~Wt~~fes~~~D~P~g  170 (211)
T 3k3k_A           98 TRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRF---EKE---N-RIWTVVLESYVVDMPEG  170 (211)
T ss_dssp             EEEEEESSSSSCEEEEEEEEEEETTTTEEEEEEEEETTGGGTCEEEEEEEEE---EET---T-EEEEEEEEEEEEECCSS
T ss_pred             EEEEEecCCCccceEEEEEEEEeccCCEEEEEEeecCcceeEEEEEEEEEEC---CCC---C-EEEEEEEEEecCCCCCC
Confidence            9999999998888999999999999999999999999999999999999998   333   2 6666555     46888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 047053          159 NSDDDTRLFVGTVVKLNLARLADLAMASFKST  190 (192)
Q Consensus       159 ~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~~~  190 (192)
                      ..++++..|++++|+.||++|++.+|+++...
T Consensus       171 ~~~e~a~~~v~~iy~~gL~~L~~~~e~~~~~~  202 (211)
T 3k3k_A          171 NSEDDTRMFADTVVKLNLQKLATVAEAMARNS  202 (211)
T ss_dssp             SSSSCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            88888899999999999999999999998753

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.97  E-value=1e-30  Score=203.43  Aligned_cols=138  Identities=21%  Similarity=0.291  Sum_probs=124.2

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVL  117 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~il  117 (192)
                      +.+.+++|+||+++||++++||++++.|.|.+.+|++++|    |++|++++.+|   .+++|||+++|+++++|+|+++
T Consensus         3 ~v~~si~I~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~~G----G~vR~~~~~~G---~~~~Erl~~~D~~~~~~~y~iv   75 (146)
T 3f08_A            3 HTTTSMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEG----GRVRHLANPDG---ETIIERLEVFNDKERYYTYSIM   75 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHCSTTCHHHHCTTCCEEEEEGG----GTEEEEECTTS---CEEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEEEeCCHHHHHHHHhccccHHHhCCCeEEEEEeCC----CeEEEEEeCCC---CEEEEEEEEEeCCCCEEEEEEe
Confidence            5678899999999999999999999999999999999865    99999999887   6899999999999999999999


Q ss_pred             eCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          118 GGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       118 eg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      +|++|+++|.++++|.|.  .++|  +|.+.|++.|+| ++..++.+..+++.+|+.||++|++.+|.+-
T Consensus        76 ~g~~~~~~~~~~~~v~p~--~~~~--gt~v~w~~~~~p-~g~~~~~~~~~~~~~~~~~L~~Lk~~~e~~~  140 (146)
T 3f08_A           76 NAPFPVTNYLSTIQVKEG--TESN--TSLVEWSGTFTP-VAVSDEEAINLVHGIYSDGLKALQHAFLDLE  140 (146)
T ss_dssp             ECSSSEEEEEEEEEEEEC--SSTT--CEEEEEEEEEEE-SSSCHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             cCCCceeEEEEEEEEEEe--cCCC--cEEEEEEEEEEe-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999993  1233  499999999996 6777888999999999999999999998763

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.97  E-value=3.3e-29  Score=198.30  Aligned_cols=138  Identities=16%  Similarity=0.168  Sum_probs=121.3

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCccccee-EeecCCC--CCCeEEEEEeecCCCCceeEEEEEEEecCCceEE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSC-TMKVGAG--EVGSVRDVNIISGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~-~~~eGdG--~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      .+++.+++|+||+++||++++||+++ .|.|.+.+| ++++|+|  ++|+||.+    |   .+++|||+++|+++++|+
T Consensus         2 ~~v~~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~----g---g~v~Erl~~~D~~~~~~s   73 (160)
T 3p51_A            2 PKVYNSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCKKVGGGGGYSVGARRLL----N---GEFLDTLIAYSEIERRIM   73 (160)
T ss_dssp             CEEEEEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEEEESSCCTTCTTCEEEE----T---TTEEEEEEEEETTTTEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHhCcCCC-eEccCceEEEEEEecCCCCCCCCEEEE----C---CEEEEEEEEEcCCCcEEE
Confidence            35678899999999999999999999 999987776 9988864  89999998    3   378999999999999999


Q ss_pred             EEEEeCCCC-----cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047053          114 FRVLGGDHR-----LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFK  188 (192)
Q Consensus       114 Y~ileg~~p-----~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~  188 (192)
                      |+|++|++|     +++|.++++|.|.  +++|  +|.|.|++.|++++    +.+..+++.+|+.+|++|++.+|+...
T Consensus        74 Y~ii~g~l~~~~~~~~~y~~~~~v~p~--~~~g--gt~V~w~~~~~~~~----~~~~~~~~~~~~~~L~~Lk~~~e~~~~  145 (160)
T 3p51_A           74 YSMDEGPSPVSSGEIYNYVGNLHLLPV--TIDD--TTFVEWSGSWESAS----TEAVEYMNTVYRSLLADLAAEFTSESR  145 (160)
T ss_dssp             EEEEECSTTSSTTTEEEEEEEEEEEEE--TTTT--EEEEEEEEEEEESC----SHHHHHHHHHHHHHHHHHHHHSCTTTC
T ss_pred             EEEecCCCcccccceeEEEEEEEEEEe--cCCC--CEEEEEEEEEEeCH----HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999998     9999999999998  3244  69999999999864    267889999999999999999998766


Q ss_pred             cC
Q 047053          189 ST  190 (192)
Q Consensus       189 ~~  190 (192)
                      +.
T Consensus       146 ~~  147 (160)
T 3p51_A          146 RS  147 (160)
T ss_dssp             C-
T ss_pred             cc
Confidence            54

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=99.96  E-value=1.1e-28  Score=194.23  Aligned_cols=139  Identities=17%  Similarity=0.301  Sum_probs=113.1

Q ss_pred             eEEEEEEEcCChhhHhhh-hcCCCCC-CccCc-ccceeEeecCCCCCCeEEEEEeecC-CCCceeEEEEEEEecCCceEE
Q 047053           38 TSLITQKINTPLSFVWPF-VRDFTNP-DKYKN-FIRSCTMKVGAGEVGSVRDVNIISG-PPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~-v~df~~~-~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G-~p~~~vkErL~~iD~~~~~~~  113 (192)
                      +.+.+++|++||++||++ ++||+++ ++|+| .+++|++++|+|++|+||.|+|.+| .| .+++|||+.+|+++|+|+
T Consensus         4 ~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~g~~~-~~~kErl~~iD~~~~~~~   82 (155)
T 2flh_A            4 EFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSP-SYQREEITEFDESSHEIG   82 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEECTTSSS-CEEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCCCCCCeEEEEEeeCCCCC-cEEEEEEEEEeCCCCEEE
Confidence            456789999999999999 7999997 89998 6799999999999999999999988 77 799999999999999999


Q ss_pred             EEEEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHH-HHHHHHHHHHHHHHH
Q 047053          114 FRVLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFV-GTVVKLNLARLADLA  183 (192)
Q Consensus       114 Y~ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l-~~~~~~~L~~L~~~a  183 (192)
                      |+|++|++   +|++|.++++|.|.   ++|  +|.+.|+.+|++..+...+ ...+. +.++...++.|.+.+
T Consensus        83 y~iieg~~l~~~~~~~~~~i~v~p~---~~g--gs~v~wt~~y~~~~~~~~~-~~~~~~~~~~~~~~k~ie~yl  150 (155)
T 2flh_A           83 LQVIEGGYLSQGLSYYKTTFKLSEI---EED--KTLVNVKISYDHDSDIEEK-VTPTKTSQSTLMYLRRLERYL  150 (155)
T ss_dssp             EEEEEEGGGGTTCSEEEEEEEEEEE---ETT--EEEEEEEEEEEC--------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccccCceEEEEEEEEEEC---CCC--CEEEEEEEEEEECCCCccC-hhHhhhHHHHHHHHHHHHHHH
Confidence            99999985   89999999999998   344  5999999999876544332 22221 155666666766655

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=99.96  E-value=2.3e-27  Score=186.97  Aligned_cols=141  Identities=13%  Similarity=0.131  Sum_probs=117.0

Q ss_pred             eEEEEEEEcCChhhHhhhhc-CCCC-CCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053           38 TSLITQKINTPLSFVWPFVR-DFTN-PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~-df~~-~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      +.+.+++|++||++||++++ ||++ +++|.|.|++|++++|+|++|+||.|+|.+|.|..+++|||+++|+++|+|+|+
T Consensus         4 ~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~~~y~   83 (157)
T 1tw0_A            4 VFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLGYDYS   83 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCCCCCeEEEEEeeCCCccceEEEEEEEEeccCCEEEEE
Confidence            45678999999999999999 9986 588889999999999998999999999998876668999999999999999999


Q ss_pred             EEeCCC-C--cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          116 VLGGDH-R--LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNS--DDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       116 ileg~~-p--~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~--~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      +++|++ +  |++|.++++|.|.   ++|  +|.+.|+.+|++..+..  ++.++ ....++...++.|.+.+-
T Consensus        84 iieGd~~~~~~~~~~~~~~v~~~---~~~--gs~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll  151 (157)
T 1tw0_A           84 IVGGTGLPESLEKLSFETKVVAG---SGG--GSISKVTLKFHTKGDAPLSDAVRD-DALAKGAGFFKAIEGYVL  151 (157)
T ss_dssp             EEECTTSCTTEEEEEEEEEEEEC---SSS--SEEEEEEEEEEESTTCCCCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCccceEEEEEEEEEEec---CCC--CEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            999985 4  9999999999998   333  49999999998754433  23232 335566777777776653

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=99.95  E-value=4.8e-28  Score=190.33  Aligned_cols=141  Identities=12%  Similarity=0.102  Sum_probs=116.7

Q ss_pred             eEEEEEEEcCChhhHhhhhc-CCCC-CCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053           38 TSLITQKINTPLSFVWPFVR-DFTN-PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~-df~~-~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      +.+.+++|++||++||++++ ||++ +++|.|.|++|++++|+|++|+||.|+|.+|.|..+++|||+++|+++|+|+|+
T Consensus         4 ~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~~~y~   83 (155)
T 1icx_A            4 AFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYS   83 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTEEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCCCCCeEEEEEEecCCcceeEEEEEEEEeccCCEEEEE
Confidence            45678999999999999999 9986 477889999999999998999999999998877668999999999999999999


Q ss_pred             EEeCCC-C--cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          116 VLGGDH-R--LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA  183 (192)
Q Consensus       116 ileg~~-p--~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~a  183 (192)
                      +++|++ +  |++|.++++|.|.   ++|  +|.+.|+.+|++..+...+...+....++...++.|.+.+
T Consensus        84 iieGd~~~~~~~~~~~~~~v~~~---~~~--gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl  149 (155)
T 1icx_A           84 IIGGEGLDESLEKISYESKILPG---PDG--GSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYV  149 (155)
T ss_dssp             EEEETTSCTTEEEEEEEEEEEEC---GGG--CEEEEEEEEEEESSSSCCHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCccceEEEEEEEEEEec---CCC--CEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999985 4  9999999999997   333  4999999999875443222222233556777777777665

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=99.95  E-value=9.1e-28  Score=190.07  Aligned_cols=117  Identities=16%  Similarity=0.175  Sum_probs=104.8

Q ss_pred             eeEEEEEEEcCChhhHhhhh-cCCCC-CCccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEE
Q 047053           37 CTSLITQKINTPLSFVWPFV-RDFTN-PDKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v-~df~~-~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      .+.+.+++|++||++||+++ +||++ +++|+| .|++|++++|+|++|+||.|+|.+|.|..+++|||+++|+++|+|+
T Consensus         3 ~~~~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g~~~~~~kErl~~iD~~~~~~~   82 (159)
T 4a8u_A            3 FNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYS   82 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSCSEEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCCCceEEEEEEecCCCccEEEEEEEEEccccCEEE
Confidence            35577899999999999998 99999 588988 6899999999999999999999998887799999999999999999


Q ss_pred             EEEEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC
Q 047053          114 FRVLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG  158 (192)
Q Consensus       114 Y~ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g  158 (192)
                      |+|++|++   +|++|+++++|.|.   ++|  +|.+.|+.+|++..+
T Consensus        83 y~iiegd~l~~~~~~y~~ti~v~p~---~~g--gs~v~wt~~y~~~~~  125 (159)
T 4a8u_A           83 YSVIEGGPVGDTLEKISNEIKIVAT---PNG--GSILKINNKYHTKGD  125 (159)
T ss_dssp             EEEEEETTCBTTEEEEEEEEEEEEC---TTS--CEEEEEEEEEEESSS
T ss_pred             EEEeeCCCCccceEEEEEEEEEEEC---CCC--ceEEEEEEEEEECCC
Confidence            99999985   49999999999998   344  499999999986544

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=99.95  E-value=1.3e-27  Score=188.56  Aligned_cols=141  Identities=13%  Similarity=0.153  Sum_probs=118.0

Q ss_pred             eEEEEEEEcCChhhHhhhhc-CCCC-CCccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           38 TSLITQKINTPLSFVWPFVR-DFTN-PDKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~-df~~-~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      +.+.+++|++||++||++++ ||++ +++|+| .|++|++++|+|++|+||.|+|.+|.|..+++|||+.+|+++|+|+|
T Consensus         4 ~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~G~~~~~~kErl~~~D~~~~~~~y   83 (159)
T 1e09_A            4 TYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSY   83 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCCCceEEEEEecCCCCceEEEEEEEEEcCCCCEEEE
Confidence            45678999999999999999 9986 589998 78999999999899999999999887767999999999999999999


Q ss_pred             EEEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          115 RVLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN--SDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       115 ~ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~--~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      ++++|++   +|++|.++++|.|.   ++|  +|.+.|+.+|++..+.  .++... ....++...++.|.+.+-
T Consensus        84 ~iieG~~~~~~~~~~~~~~~v~~~---~~~--gs~v~wt~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll  152 (159)
T 1e09_A           84 TLIEGDALGDTLEKISYETKLVAS---PSG--GSIIKSTSHYHTKGNVEIKEEHVK-AGKEKASNLFKLIETYLK  152 (159)
T ss_dssp             EECCCTTTGGGEEEEEEEEEECCC---TTS--SEEEEEEEEEEECSSCCCCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccCcccceEEEEEEEEEec---CCC--CEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            9999986   89999999999998   333  4999999999875443  233333 335556667777776653

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.95  E-value=1.1e-27  Score=190.58  Aligned_cols=146  Identities=14%  Similarity=0.170  Sum_probs=115.9

Q ss_pred             CCCCCCceeEEEEEEEcCChhhHhhhh-cCCCCCCccCc-ccceeEeecCC-CCCCeEEEEEeecCCCCceeEEEEEEEe
Q 047053           30 FPPSPNTCTSLITQKINTPLSFVWPFV-RDFTNPDKYKN-FIRSCTMKVGA-GEVGSVRDVNIISGPPATTSTERLEMLD  106 (192)
Q Consensus        30 ~~~~~~~~~~~v~~~I~apa~~VW~~v-~df~~~~~w~p-~v~s~~~~eGd-G~vG~VR~~~~~~G~p~~~vkErL~~iD  106 (192)
                      |.|.+++++  ++++|+|||++||+++ +||+.+++|+| .|++|++++|+ |++|+||.|+|.+|.+..+++|||+++|
T Consensus        12 ~~~~~~k~~--~ev~i~apa~kvw~~~~~d~~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~~~~kErl~~iD   89 (166)
T 2i9y_A           12 ASSLVGKLE--TDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAVE   89 (166)
T ss_dssp             CSSSEEEEE--EEEEESSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEEEEEEEEEEEEE
T ss_pred             ccCCccEEE--EEEEecCCHHHHHHHHhcccccccccccccceEEEEEcCCCCCCCeEEEEEEecCCCceEEEEEEEEEe
Confidence            556555554  5689999999999995 58999999999 99999999998 8999999999998766669999999999


Q ss_pred             cCCceEEEEEEeCCC--CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          107 DENHILSFRVLGGDH--RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA  183 (192)
Q Consensus       107 ~~~~~~~Y~ileg~~--p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~a  183 (192)
                      +++++|+|+|++|++  +|++|.++++|.|.  ++++  +|.+.|+.+|+...+..... ..++ .++...++.|.+.+
T Consensus        90 ~~~~~~~y~iieGd~~~~~~~~~~ti~v~p~--~~g~--gs~v~wt~~ye~~~~~~~~p-~~~~-~~~~~~~k~ie~~l  162 (166)
T 2i9y_A           90 PDKNLITFRVIEGDLMKEYKSFLLTIQVTPK--PGGP--GSIVHWHLEYEKISEEVAHP-ETLL-QFCVEVSKEIDEHL  162 (166)
T ss_dssp             TTTTEEEEEECCTTGGGTEEEEEEEEEEEEE--EETT--EEEEEEEEEEEESSTTTCCT-HHHH-HHHHHHHHHHHHHH
T ss_pred             ccCcEEEEEEEeCCCCCCeeEEEEEEEEEEC--CCCC--CcEEEEEEEEEECCCCCCCH-HHHH-HHHHHHHHHHHHHH
Confidence            999999999999987  79999999999997  3222  59999999997644332221 1222 34555555555543

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=99.95  E-value=2.5e-27  Score=186.78  Aligned_cols=141  Identities=12%  Similarity=0.143  Sum_probs=117.0

Q ss_pred             eEEEEEEEcCChhhHhhhhc-CCCC-CCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053           38 TSLITQKINTPLSFVWPFVR-DFTN-PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~-df~~-~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      +.+.+++|++||++||++++ ||++ +++|.|.|++|++++|+|++|+||.|+|.+|.|..+++|||+++|+++++|+|+
T Consensus         5 ~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdgg~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   84 (158)
T 2qim_A            5 TFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANLGYNYS   84 (158)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCCCCCeEEEEEEcCCCcceeEEEEEEEEecCCCEEEEE
Confidence            56678999999999999999 9987 478889999999999998999999999998876668999999999999999999


Q ss_pred             EEeCCC-C--cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          116 VLGGDH-R--LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNS--DDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       116 ileg~~-p--~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~--~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      +++|++ +  |++|.++++|.|.   ++|  +|.+.|+.+|++..+..  ++..+ ....++...++.|.+.+-
T Consensus        85 iieG~~~~~~~~~~~~~~~v~~~---~~~--gs~v~wt~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll  152 (158)
T 2qim_A           85 IVGGVGLPDTIEKISFETKLVEG---ANG--GSIGKVTIKIETKGDAQPNEEEGK-AAKARGDAFFKAIESYLS  152 (158)
T ss_dssp             EEEESSCCCSEEEEEEEEEEEEC---STT--CEEEEEEEEEEESTTCCCCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCccceEEEEEEEEEEec---CCC--CEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            999985 4  9999999999998   333  49999999998765433  23232 335566777777776653

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=99.95  E-value=2.2e-27  Score=189.18  Aligned_cols=116  Identities=16%  Similarity=0.202  Sum_probs=103.9

Q ss_pred             eeEEEEEEEcCChhhHhhh-hcCCCCC-CccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEE
Q 047053           37 CTSLITQKINTPLSFVWPF-VRDFTNP-DKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~-v~df~~~-~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      .+.+.+++|++||++||++ ++||+++ ++|+| .|++|++++|+|++|+||.|+|.+|.|..+++|||+++|+++|+|+
T Consensus        10 ~~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~iD~~~~~~~   89 (165)
T 3ie5_A           10 YTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHKFDEIDAANFYCK   89 (165)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTTSSCCEEEEEEEEEEGGGTEEE
T ss_pred             EEEEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCCCCCCeEEEEEecCCCCCceEEEEEEEEchhcCEEE
Confidence            4667889999999999999 5999997 89998 6999999999999999999999998877799999999999999999


Q ss_pred             EEEEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC
Q 047053          114 FRVLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG  158 (192)
Q Consensus       114 Y~ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g  158 (192)
                      |+|++|++   +|++|+++++|.+.    +|  +|.+.|+.+|++..+
T Consensus        90 Y~iieG~~l~~~~~~y~~~i~v~~~----~g--gs~vkwt~~y~~~~~  131 (165)
T 3ie5_A           90 YTLFEGDVLRDNIEKVVYEVKLEAV----GG--GSKGKITVTYHPKPG  131 (165)
T ss_dssp             EEEEEEGGGTTTEEEEEEEEEEEEE----TT--EEEEEEEEEEEECTT
T ss_pred             EEEecCCCCccceEEEEEEEEEEeC----CC--ceEEEEEEEEEECCC
Confidence            99999984   59999999999933    33  599999999986544

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=99.95  E-value=3.1e-27  Score=193.76  Aligned_cols=121  Identities=15%  Similarity=0.267  Sum_probs=105.4

Q ss_pred             CCCceeEE--EEEEEcCChhhHhhh-hc-CCCCC-CccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEe
Q 047053           33 SPNTCTSL--ITQKINTPLSFVWPF-VR-DFTNP-DKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLD  106 (192)
Q Consensus        33 ~~~~~~~~--v~~~I~apa~~VW~~-v~-df~~~-~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD  106 (192)
                      +|..+++.  .+++|++||++||++ ++ ||+++ ++|.| .+++|+++ |+|++|+||.|+|.+|.+..+++|||+++|
T Consensus        23 ~~~~~~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-GdGg~GsIR~lt~~~G~~~~~vkErle~iD  101 (201)
T 2vq5_A           23 QVSTVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFVPGEFPHEYKEKFILVD  101 (201)
T ss_dssp             GGCCEEEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SSSSTTCEEEEECCTTCSSCEEEEEEEEEE
T ss_pred             CccccceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cCCCCCeEEEEEecCCCcccEEEEEEEEEc
Confidence            45555444  778999999999999 57 99997 79998 67999999 999999999999999877779999999999


Q ss_pred             cCCceEEEEEEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC
Q 047053          107 DENHILSFRVLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN  159 (192)
Q Consensus       107 ~~~~~~~Y~ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~  159 (192)
                      +++|+|+|+|++|++   +|++|.++++|.|.   ++|  +|.+.|+.+|++..+.
T Consensus       102 de~~~~sYsiieGd~l~~~~~~y~~tikv~p~---~dg--gs~vkWt~~ye~~~~~  152 (201)
T 2vq5_A          102 NEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPT---GKD--SCVIKSSTEYHVKPEF  152 (201)
T ss_dssp             TTTTEEEEEEEEEGGGGTTEEEEEEEEEEEEE---ETT--EEEEEEEEEEEECGGG
T ss_pred             hhhCEEEEEEEecCccccceeEEEEEEEEEEC---CCC--CeEEEEEEEEEECCCC
Confidence            999999999999984   89999999999998   344  5999999999865433

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.94  E-value=4.7e-27  Score=181.26  Aligned_cols=140  Identities=20%  Similarity=0.243  Sum_probs=122.7

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCC-CCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGA-GEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRV  116 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGd-G~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~i  116 (192)
                      +.+.+++|+||+++||+++.||.+++.|.|.+.+|++.+|+ +++|++|.+++.+|   .+++|+|+++|+.+++++|++
T Consensus         3 ~v~~si~I~ap~e~Vw~~l~d~~~~~~w~p~v~~~~~~~g~~~~~G~~r~~~~~~G---~~~~e~i~~~d~~~~~~~~~~   79 (151)
T 2le1_A            3 TLRRSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTE---EELVERLVERDESARRLVYTM   79 (151)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTSGGGGGTCTTCCCEEEESSCTTSTTCEEEESSSSS---SCEEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEEEecCCHHHHHHHHhCcCcHHHhcCCceEEEEECCCCCCCCeEEEEEeCCC---CEEEEEEEEEeCCCCEEEEEE
Confidence            56778999999999999999999999999999999998875 68999999999776   479999999999999999999


Q ss_pred             EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          117 LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI-PEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       117 leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~-~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      ++|++|+++|.++++|.|.   +++  +|.+.|+.+|++ |.+.....+. +++.+|+.+|++||+.+|+.
T Consensus        80 ~~g~~~~~~~~~~~~l~~~---~~~--gt~v~w~~~f~~~p~~~~~~~~~-~~~~~~~~~L~~Lk~~~e~~  144 (151)
T 2le1_A           80 PDPPFPITNHRAVLEVVPR---DDR--HCTVVWTAMFDCSPETARELESV-IGDGVFAVGLNALAERYGRL  144 (151)
T ss_dssp             EECSSSEEEEEEEEEEEES---SSS--CEEEEEEEEEEECHHHHHHHHHH-TTTTHHHHHHHHHHHHTTTT
T ss_pred             ecCCCCceeEEEEEEEEEC---CCC--cEEEEEEEEEEecCCCCCHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence            9998899999999999996   233  499999999987 4544445566 77899999999999998864

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=99.93  E-value=7.6e-25  Score=172.66  Aligned_cols=113  Identities=19%  Similarity=0.217  Sum_probs=98.9

Q ss_pred             eEEEEEEEcCChhhHhhh-hcCCCCC-CccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           38 TSLITQKINTPLSFVWPF-VRDFTNP-DKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~-v~df~~~-~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      +.+.++++++||+++|++ +.|++++ ++|.| .+++++ ++|+|++|+||.|+|..|.|..+++|||+++|+++|+|+|
T Consensus         5 ~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~-veGdg~~Gsir~~t~~~g~~~~~~kErle~iD~~~~~~~y   83 (154)
T 2wql_A            5 SHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVE-VKGDGGAGTVRIITLPEGSPITTMTVRTDAVNKEALSYDS   83 (154)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEE-EESSSSTTCEEEEECCTTCSCCEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEE-EECCCCCCeEEEEEEcCCCCceEEEEEEEEEehhhCEEEE
Confidence            456788999999999986 5899984 77777 677877 5799999999999999888878999999999999999999


Q ss_pred             EEEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053          115 RVLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP  156 (192)
Q Consensus       115 ~ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~  156 (192)
                      +|++|++   +|++|..+++|.|.   ++|  +|.+.|+..|+..
T Consensus        84 ~iieGd~l~~~~~~~~~~ikv~p~---~~g--gsvvk~t~~Y~~~  123 (154)
T 2wql_A           84 TVIDGDILLGFIESIETHMVVVPT---ADG--GSITKTTAIFHTK  123 (154)
T ss_dssp             EEEESGGGTTTEEEEEEEEEEEEC---TTS--CEEEEEEEEEEES
T ss_pred             EEEeccccccceEEEEEEEEEeeC---CCC--cEEEEEEEEEEEC
Confidence            9999984   89999999999998   444  4999999998754

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.77  E-value=6e-18  Score=132.68  Aligned_cols=143  Identities=9%  Similarity=0.027  Sum_probs=110.2

Q ss_pred             hcCCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEec
Q 047053           28 HTFPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDD  107 (192)
Q Consensus        28 ~~~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~  107 (192)
                      ++|+|++.+.+  .+++|+||+++||+++.||.+.+.|.|.+.++++ +|.-++|+.++++...|   ..+.++|+++|+
T Consensus        11 ~~~g~~~~~i~--~si~I~Appe~VW~~ltD~~~~~~W~p~v~~~~~-~G~~~~G~~~~~~~~~~---~~~~~~v~~~~p   84 (155)
T 3ijt_A           11 QQMGRGSMKFS--FELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISL-EGEFTTGQKGKMKMEDM---PELAFTLVEVRE   84 (155)
T ss_dssp             ----CCCEEEE--EEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEE-SSSSSTTCEEEEEETTS---CCEEEEECCCBT
T ss_pred             cccCCCcEEEE--EEEEEcCCHHHHHHHHhCcccccccchhhEeeec-cCCCCCCCEEEEEeCCC---CcEEEEEEEEeC
Confidence            56999988776  5589999999999999999999999999988875 46557999999988755   367889999998


Q ss_pred             CCceEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          108 ENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN-SDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       108 ~~~~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~-~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                       ++.|+|...   +|+..|..+.+|.|.   ++|  +|.|.|+.+++-+... ....+...+...+..+|++||+.+|+
T Consensus        85 -~~~~~~~~~---~p~~~~~~~h~l~p~---~~g--gTrvt~~~~~~G~~~~~~~~~~~~~i~~~~~~~l~~LK~~aE~  154 (155)
T 3ijt_A           85 -NQCFSDLTA---TPFGNVLFEHEILEN---PDG--TISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILET  154 (155)
T ss_dssp             -TTEEEEEEE---ETTEEEEEEEEEEEC---TTS--CEEEEEEEEESCCSCCHHHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred             -CcEEEEEEe---cCCeEEEEEEEEEEc---CCC--cEEEEEEEEEECCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence             566888653   455678888899986   333  4999999999754421 12234567788899999999999986

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.68  E-value=1.2e-15  Score=120.08  Aligned_cols=142  Identities=12%  Similarity=0.037  Sum_probs=109.8

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEE--e-ecCCCCceeEEEEEEEecCCceEEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVN--I-ISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~--~-~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      +.+.++.|++|+++||+++.|+.+.+.|+|.+.++++++++|..-.+| ++  . .+|....+..++  .+|+..+++.|
T Consensus         4 ~v~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~~~~~~r-l~~~~~~~G~~~~~ts~~--~~d~~~~~I~~   80 (159)
T 3tl1_A            4 HTDNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFR-LTMHPDADGKVWSWVSER--VADPVTRTVRA   80 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECSSEEEEE-EEECCCTTSCCCEEEEEE--EEETTTTEEEE
T ss_pred             eeEEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCCCEEEEE-EEEEeccCceEEEEEEEE--EEcCCCCEEEE
Confidence            356789999999999999999999999999999999887664223333 33  2 235433344444  48888999999


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI--PEGNSDDDTRLFVGTVVKLNLARLADLAMASFKS  189 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~--~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~~  189 (192)
                      +.+..+ |++.|.++.+|.|.   ++   +|.|.|..+|+.  ..+.....+.+.++..+..+|++||+.+|+.++.
T Consensus        81 ~~~~~g-Pf~~l~g~W~f~p~---~~---gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E~~~~~  150 (159)
T 3tl1_A           81 QRVETG-PFQYMNIVWEYAET---AE---GTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIEQAAGE  150 (159)
T ss_dssp             EESSCT-TEEEEEEEEEEEEE---TT---EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEccCC-ChhhccCEEEEEEC---CC---CEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence            988433 89999999999998   44   499999977654  3455556677889999999999999999987653

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.68  E-value=8.6e-16  Score=122.09  Aligned_cols=141  Identities=9%  Similarity=0.064  Sum_probs=110.1

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEE-EE---eecCCCCceeEEEEEEEecCCceEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRD-VN---IISGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~-~~---~~~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      +.+.++.|++|+++||+++.|+.+++.|.|.+.++++.++++  +.+|. +.   ..+|....+..++  .+|+..+++.
T Consensus         4 ~v~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~~~--~~~~~~l~~~~~~~G~~~~~ts~~--~~d~~~~~I~   79 (169)
T 3tvq_A            4 RTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDG--DGFDFRLKTRPDANGRVWEWVSHR--VPDKGSRTVR   79 (169)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEEET--TEEEEEEEECCCTTSCCCEEEEEE--EEEGGGTEEE
T ss_pred             eEEEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEecCC--CEEEEEEEEEecCCCeEEEEEEEE--EEcCCCcEEE
Confidence            567789999999999999999999999999999999987654  33332 22   1234333344454  3788899999


Q ss_pred             EEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 047053          114 FRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI--PEGNSDDDTRLFVGTVVKLNLARLADLAMASFKS  189 (192)
Q Consensus       114 Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~--~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~~  189 (192)
                      |+.+.++ |++.|.++++|.|.   ++   +|.|.|..+|+.  +.+.....+.+.++..+..+|++||+.+|+.++.
T Consensus        80 ~~~l~~g-Pf~~~~g~W~f~p~---~~---gt~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE~~~~~  150 (169)
T 3tvq_A           80 AHRVETG-PFAYMNLHWTYRAV---AG---GTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHRE  150 (169)
T ss_dssp             EEESSCT-TEEEEEEEEEEEEE---TT---EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCC-ChhheeeEEEEEEC---CC---CEEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence            9987544 99999999999998   44   399999877654  3455666688889999999999999999987653

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.65  E-value=6.1e-15  Score=109.34  Aligned_cols=139  Identities=17%  Similarity=0.122  Sum_probs=102.8

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeec-CCCCceeEEEEEEEecCCceEEEEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIIS-GPPATTSTERLEMLDDENHILSFRV  116 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~-G~p~~~vkErL~~iD~~~~~~~Y~i  116 (192)
                      +...+++|+||+++||+++.|+.+++.|.|.+.++++.++++ .|....+++.. |.+ .....++... +.++++.|++
T Consensus         3 ~~~~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~-~g~~~~~~~~~~g~~-~~~~~~~~~~-~~~~~i~~~~   79 (147)
T 2d4r_A            3 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREG-ARTRSRWVAVAMGKK-VRWLEEEEWD-DENLRNRFFS   79 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEET-TEEEEEEEEEETTEE-EEEEEEEEEE-TTTTEEEEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCC-CccEEEEEEEeCCce-EEEEEEEEEc-CCCcEEEEEe
Confidence            466789999999999999999999999999998888875432 25555555442 321 2344555544 4588999999


Q ss_pred             EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          117 LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNS----DDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       117 leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~----~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      .+|+  +..+.++++|.|.   ++|   |.|.|..+++++.+..    ...+...++..+...|++|++.+|+.+
T Consensus        80 ~~g~--~~~~~~~~~~~~~---~~g---T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~~  146 (147)
T 2d4r_A           80 PEGD--FDRYEGTWVFLPE---GEG---TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAAS  146 (147)
T ss_dssp             EEES--CSEEEEEEEEEEC---SSS---EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCC--hhheEEEEEEEEC---CCC---cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9884  5778999999998   443   9999999988653322    223335566888999999999999864

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.61  E-value=1.6e-14  Score=113.79  Aligned_cols=147  Identities=12%  Similarity=0.061  Sum_probs=107.5

Q ss_pred             CceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           35 NTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        35 ~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      .+.+.+.++.|++|+++||+++.|+.+++.|.|.+.++++++++++.-.+|.....+|.. .....++ .+|+..+++.|
T Consensus         3 ~M~~v~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~~~~~~~~~~~G~~-~~~~s~~-~~~~~~~~i~~   80 (172)
T 3tfz_A            3 HMRHVEHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGYQVVRLHVDVAGEI-NTWTSRR-DLDPARRVIAY   80 (172)
T ss_dssp             CCEEEEEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTEEEEEEEEEETTEE-EEEEEEE-EEETTTTEEEE
T ss_pred             CCcEEEEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCEEEEEEEEecCCEE-EEEEEEE-EEeCCCCEEEE
Confidence            356788899999999999999999999999999999999986643111233321223421 1223333 47787889999


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC-------------CHHHHHHHHHHHHHHHHHHHHH
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN-------------SDDDTRLFVGTVVKLNLARLAD  181 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~-------------~~~~~~~~l~~~~~~~L~~L~~  181 (192)
                      +.++++.|++.+.++.+|.|.   +++  +|.|.|..+|+...+.             ....+...++.-....|++||+
T Consensus        81 ~~~~~~gpf~~~~g~w~f~~~---~~~--~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~  155 (172)
T 3tfz_A           81 RQLETAPIVGHMSGEWRAFTL---DAE--RTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLG  155 (172)
T ss_dssp             EEEECCTTEEEEEEEEEEEEE---ETT--EEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeCCCChhhcEEEEEEEEC---CCC--cEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHH
Confidence            999877799999999999998   333  5999999988764432             1122445566667789999999


Q ss_pred             HHHhccc
Q 047053          182 LAMASFK  188 (192)
Q Consensus       182 ~ae~~~~  188 (192)
                      .+|+.+.
T Consensus       156 ~aE~~~~  162 (172)
T 3tfz_A          156 EAERRVR  162 (172)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998654

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.58  E-value=2.8e-14  Score=107.79  Aligned_cols=85  Identities=11%  Similarity=0.174  Sum_probs=69.1

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVL  117 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~il  117 (192)
                      +.+.+++|++||++||+++++++.++ |.+             +          |      ++||+++|+++++|+|+++
T Consensus         6 ~~~~e~~i~~~a~k~w~~~~~~~~~p-~g~-------------~----------G------~~~ie~iD~~~~~~~y~ii   55 (122)
T 1vjh_A            6 ALSVKFDVKCPADKFFSAFVEDTNRP-FEK-------------N----------G------KTEIEAVDLVKKTMTIQMS   55 (122)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHHTTSC-SST-------------T----------C------EEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhhcccCC-ccC-------------C----------C------ccEEEEEecccCEEEEEEE
Confidence            45678899999999999999985554 321             1          3      1299999999999999999


Q ss_pred             eCCC--CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053          118 GGDH--RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP  156 (192)
Q Consensus       118 eg~~--p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~  156 (192)
                      +|++  +|++|.++++|.|.  +++|  +|.+.|+.+|+..
T Consensus        56 eGd~~~~~~~~~~~~~v~~~--~~~~--gs~vkwt~~ye~~   92 (122)
T 1vjh_A           56 GSEIQKYFKTLKGSIAVTPI--GVGD--GSHVVWTFHFEKV   92 (122)
T ss_dssp             CTTGGGTEEEEEEEEEEEEC--SSSS--CEEEEEEEEEEES
T ss_pred             EccccccEEEEEEEEEEEEe--cCCC--CeEEEEEEEEEEC
Confidence            9997  58999999999997  3233  5999999998753

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.39  E-value=1.8e-11  Score=93.26  Aligned_cols=141  Identities=11%  Similarity=0.013  Sum_probs=103.2

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-C-C-CCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-A-G-EVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-d-G-~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      +.+.++.|++|+++||+++.|+.+++.|.|.+.++++++. + | +.+....+.+.-+.-.....-+++ +|+.++++.+
T Consensus         3 ~~~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~i~~   81 (148)
T 1t17_A            3 RHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVR-RDKDARSIDV   81 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEE-EETTTCEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCceEEEEEEEEecceeEEEEEEEE-EcCCCcEEEE
Confidence            4567899999999999999999999999999999888753 2 2 123444455432211234445665 5776668999


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      +.++|  +++.+.++.++.|.   ++   +|.|.+..+|++..+.....+..+++......++++++.++.+.
T Consensus        82 ~~~~G--~f~~~~g~w~f~~~---~~---gt~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~f~~r~~~~~  146 (148)
T 1t17_A           82 SLLYG--PFKRLNNGWRFMPE---GD---ATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQQLH  146 (148)
T ss_dssp             EESST--TSSCEEEEEEEEEE---TT---EEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCC--ChhccEEEEEEEEC---CC---CeEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998  57889999999998   44   39999999999865443444555666677777777877777653

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.36  E-value=2.8e-11  Score=93.48  Aligned_cols=139  Identities=12%  Similarity=0.064  Sum_probs=97.5

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEE-EEEeecC-CCCceeEEEEEEEecCCceEEE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVR-DVNIISG-PPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR-~~~~~~G-~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      .+.+.++.|++|+++||+++.|+.+++.|.|.+.++++.++    |..| ++....| .+ ....-+++++++ ++++.|
T Consensus         4 ~~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p~~~~v~~~~~----~~~~~~~~~~~G~~~-~~~~~~v~e~~p-~~~i~~   77 (155)
T 3ggn_A            4 TVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDD----KRSRWTVEAPAPLGT-VSWEAELTADEP-GKRIAW   77 (155)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCGGGHHHHSTTCCEEEECSS----SEEEEEEECCTTTCE-EEEEEEEEEEET-TTEEEE
T ss_pred             cEEEEEEEEcCCHHHHHHHHhCHHHhHHHhhhceEEEEecC----CeeEEEEEecCCcce-EEEEEEEEEecC-CCEEEE
Confidence            56778899999999999999999999999999999988743    2222 2333223 22 244567777765 778999


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDD----TRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~----~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      +.++|+  ...+.+++++.+.  ++++  +|.|.+...|+++.+.....    +..+.+.+++..|+++|+.+|.-.
T Consensus        78 ~~~~g~--~~~~~g~~~F~~~--~~~~--gT~V~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~l~r~k~~~e~~~  148 (155)
T 3ggn_A           78 RSLPGA--RIENSGEVLFRPA--PGAR--GTEVVVRLTYRPPGGSAGAVIARMFNQEPSQQLRDDLMRFKREQELGL  148 (155)
T ss_dssp             EECTTC--SSCEEEEEEEEEC--SSSS--CEEEEEEEEEC----------------CHHHHHHHHHHHHHHHHHHTC
T ss_pred             EECCCC--CcceEEEEEEEEC--CCCC--ceEEEEEEEEECCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            999884  4578899999886  3232  49999999999876543222    233467888999999999998743

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.25  E-value=1.7e-10  Score=88.61  Aligned_cols=143  Identities=10%  Similarity=0.010  Sum_probs=95.3

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCcee--EEEEEEEecCCceEEEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTS--TERLEMLDDENHILSFR  115 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~v--kErL~~iD~~~~~~~Y~  115 (192)
                      +.+.+..|++|+++||+++.|+..+..|.|.+.++++..|.   +....++...|.-...+  .-++.++|+ ++++.|+
T Consensus         4 ~i~~~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~   79 (162)
T 2pcs_A            4 NGNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGED---KYKADLQIGIAAVKGKYDAIIEVTDIKP-PYHYKLL   79 (162)
T ss_dssp             EEEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETT---EEEEEEEECCGGGCEEEEEEEEEEEEET-TTEEEEE
T ss_pred             EEeeEEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeCCC---eEEEEEEEEeeeEEEEEEEEEEEEecCC-CcEEEEE
Confidence            45678899999999999999999999999998888776432   12223344333111122  336667776 5677777


Q ss_pred             EEe-CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 047053          116 VLG-GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE---GNSDDDTRLFVGTVVKLNLARLADLAMASFKS  189 (192)
Q Consensus       116 ile-g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~---g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~~  189 (192)
                      ... |..+...+.++++|.|.   +++  +|.+.|..+++..-   ......+..+.+.++...+++|++.+|+..+.
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~---~~~--gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~~~~  152 (162)
T 2pcs_A           80 VNGEGGPGFVNAEGVIDLTPI---NDE--CTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKSKQE  152 (162)
T ss_dssp             EEEEETTEEEEEEEEEEEEES---SSS--EEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             EEecCCCccEEEEEEEEEEec---CCC--cEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence            653 22455578999999985   233  59999988866422   12234455566777888889999999875443

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.17  E-value=1.5e-09  Score=82.38  Aligned_cols=136  Identities=10%  Similarity=0.017  Sum_probs=92.6

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCc--eeEEEEEEEecCCceEEEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPAT--TSTERLEMLDDENHILSFR  115 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~--~vkErL~~iD~~~~~~~Y~  115 (192)
                      +.+.+.+|++|+++||+++.|+.++..|.|.+.+++ ..|.   +....++...|.-..  ..+-++.++++ ++++.|+
T Consensus        14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~p~~~~~~-~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~i~~~   88 (157)
T 2ns9_A           14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVE-VEDG---SFTIELRLSLGPLRGDARVRASFEDLEK-PSKATVK   88 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEE-EETT---EEEEEEEEESSSSEEEEEEEEEEEEEET-TTEEEEE
T ss_pred             EEeeEEEEcCCHHHHHHHHcCHHHHHhhCCCceEEE-ECCC---EEEEEEEEEEcceeEEEEEEEEEEecCC-CcEEEEE
Confidence            467788999999999999999999999999887777 4332   222223333332111  23345557776 5678887


Q ss_pred             EEe-CCC-CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          116 VLG-GDH-RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP---EGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       116 ile-g~~-p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~---~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      ... |.. ++ .+.++++|.|.   ++   +|.+.|..+++..   .......+..+++..+...+++|++.+|.
T Consensus        89 ~~~~~~~~~~-~~~~~~~l~~~---~~---gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e~  156 (157)
T 2ns9_A           89 GSGRGAGSTL-DFTLRFAVEPS---GG---GSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  156 (157)
T ss_dssp             EEEECSSEEE-EEEEEEEEEEE---TT---EEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEecCCCccE-EEEEEEEEEeC---CC---cEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            543 322 34 47899999998   43   5999999876532   12333456677788888889999998875

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=99.11  E-value=4.6e-09  Score=78.26  Aligned_cols=135  Identities=13%  Similarity=0.041  Sum_probs=92.2

Q ss_pred             ceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053           36 TCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        36 ~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      .-...+++.|+||+++||+++.|+..+..|.+.. .+   +++-.+|..-++.+.++.....+.-++.++++ ++++.|+
T Consensus         4 ~~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~-~~---~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p-~~~l~~~   78 (146)
T 2leq_A            4 KLIAQVKTVINAPIEKVWEALVNPEIIKEYMFGT-TV---VSDWKEGSQIVWKGEWKGKAYEDKGTILQFNE-RSILQYS   78 (146)
T ss_dssp             CEEEEEEEEECSCHHHHHHHHSCTTHHHHHSSSC-EE---ECCCSTTCEEEEEEEETTEEEEEEEEEEEEET-TTEEEEE
T ss_pred             CceEEEEEEECCCHHHHHHHHcCHHHhceeEcCC-cc---eeccCCCCEEEEEecCCCceecccEEEEEEcC-CCEEEEE
Confidence            3466788999999999999999999999996311 11   23323455445555544211256788999997 7789998


Q ss_pred             EEeCC--C---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          116 VLGGD--H---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       116 ileg~--~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      .....  +   +-..+..++.|.|.   ++|   |.+.+..+.-++.     .....+...+...|++|++.+|.-
T Consensus        79 ~~~~~~g~~~~~~~~~~~~~~l~~~---~~g---T~l~~~~~~~~~~-----~~~~~~~~gw~~~l~~Lk~~le~~  143 (146)
T 2leq_A           79 HFSPLTGKPDLPENYHVVTITLTAL---KKG---VEVELTQDNNETE-----KEQKHSEDNWNTMLEGLKKFLENK  143 (146)
T ss_dssp             CBCGGGCCCSCGGGSCEEEEEEEEC---SSC---EEEEEEEEEESSH-----HHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EccCccCCCCCCCCceEEEEEEEEc---CCC---eEEEEEEecCCch-----hhHhhHHhhHHHHHHHHHHHHhcc
Confidence            76421  1   23367889999997   443   8888886533221     244556777889999999999864

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=99.03  E-value=1.5e-08  Score=75.86  Aligned_cols=136  Identities=13%  Similarity=0.013  Sum_probs=91.4

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCccc-ceeEeecCCCCCCeEEEEEee---cCCCCceeEEEEEEEecCCceEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNFI-RSCTMKVGAGEVGSVRDVNII---SGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v-~s~~~~eGdG~vG~VR~~~~~---~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      ...+++.|+||+++||+++.|...+..|.+.- -.+...+++-.+|..-++.+.   +| ......-++.++++ ++++.
T Consensus         4 ~~~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~g-~~~~~~~~v~~~~p-~~~l~   81 (147)
T 1z94_A            4 TIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASG-QKHAFGGRYLELVP-GERIR   81 (147)
T ss_dssp             CEEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTC-CEEEEEEEEEEEET-TTEEE
T ss_pred             EEEEEEEeCCCHHHHHHHhCCHHHHhhccCCCCEeeeEEEEccCCCcEEEEEEEECCCC-CEEEEEEEEEEEcC-CCEEE
Confidence            35677899999999999999999988887631 122233344445655555543   22 11356778999987 77899


Q ss_pred             EEEEeCCCCc-ceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          114 FRVLGGDHRL-QNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       114 Y~ileg~~p~-~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      |+...++... .....++.|.+.   ++   +|.+.+..++.+. ..    ....+..-....|++|++.+|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~---~~---gT~l~~~~~~~~~-~~----~~~~~~~gw~~~L~~L~~~le~~  144 (147)
T 1z94_A           82 YTDRFDDAGLPGDMITTITLAPL---SC---GADLSIVQEGIPD-AI----PPENCYLGWQQSLKQLAALVEPD  144 (147)
T ss_dssp             EEEEESCCC---CEEEEEEEEEE---TT---EEEEEEEEECCCT-TS----CHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEEeCCCCCCcEEEEEEEEec---CC---CEEEEEEEEcCCc-hh----hHHHHHHHHHHHHHHHHHHHHhh
Confidence            9987653322 256788999987   34   4999988876532 21    12334566788899999998863

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.99  E-value=5.2e-09  Score=80.59  Aligned_cols=135  Identities=12%  Similarity=0.049  Sum_probs=92.6

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEE
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      |......++++|+||+++||+++.|...+..|++.+.....     .+|..-.+.+. |..  .+..+++++++ ++++.
T Consensus         6 ~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~-----~~Gg~~~~~~~-g~~--~~~~~v~e~~p-~~~l~   76 (160)
T 2lak_A            6 PESFVVRREAHLAAPPAAVFALMTDPEKILRWMGTEAEVEP-----EPGGLYLVNVT-GAR--FARGSFREVVP-VHRLA   76 (160)
T ss_dssp             CSCCEEEEEEEESSCHHHHHHHHHCHHHHHHTSCSSEEESC-----STTCCEEECSS-TTC--CSSCCEEEEET-TTEEE
T ss_pred             CCCceEEEEEEeCCCHHHHHHHhcChHHHhhhCCCcceeec-----cCCCEEEEEEe-CCc--eEEEEEEEEcC-CCEEE
Confidence            45567778899999999999999999999899876433322     23333335454 422  45567888987 77899


Q ss_pred             EEEEeCC---CCcceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 047053          114 FRVLGGD---HRLQNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFKS  189 (192)
Q Consensus       114 Y~ileg~---~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~~  189 (192)
                      |+...++   .+-.....++.|.|.   ++|   |.+.|..+ +..     .. ....+..-+...|++|++.++.....
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~---~~g---T~l~~~~~~~~~-----~~-~~~~~~~gw~~~L~~Lk~~le~~~~~  144 (160)
T 2lak_A           77 YSFGWDGSEVVPPGSSLVEIDLIEQ---GGG---TLLRLTHSGLPS-----AE-QCAGHEEGWAHYLGRLTEVAAGRDPG  144 (160)
T ss_dssp             ECCCCCSSSCCCTTSCEEEEEEEEC---SSS---EEEEEEEECCCS-----HH-HHHHHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             EEEEecCCCCCCCCcEEEEEEEEEC---CCC---EEEEEEEeCCCC-----HH-HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9876432   233478889999997   443   89988766 321     12 23334555688999999999976543

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=98.98  E-value=2.4e-08  Score=78.41  Aligned_cols=142  Identities=10%  Similarity=-0.000  Sum_probs=93.5

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcc-cceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCc
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNF-IRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENH  110 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~-v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~  110 (192)
                      |......+++.|+||+++||+++.|...+..|++. --.+...+++..+|..-.+.+.  +|. .....-++.++++ ++
T Consensus        19 ~~~~~i~~~r~i~Ap~e~Vw~altdpe~~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~-~~~~~~~v~e~~p-~~   96 (178)
T 1xuv_A           19 PGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGN-EYAFHGVNHDVTE-PE   96 (178)
T ss_dssp             TTCSEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSC-EEEEEEEEEEEET-TT
T ss_pred             CCCcEEEEEEEECCCHHHHHHHhCCHHHHHhCCCCCCccceEEEEecccCCEEEEEEECCCCC-EEEEEEEEEEEeC-CC
Confidence            34556778899999999999999999998888642 1123333344445554444443  332 1246778999987 77


Q ss_pred             eEEEEEEeCCCC--cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHH----HHHHHHHHHHHHHHHHH
Q 047053          111 ILSFRVLGGDHR--LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLF----VGTVVKLNLARLADLAM  184 (192)
Q Consensus       111 ~~~Y~ileg~~p--~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~----l~~~~~~~L~~L~~~ae  184 (192)
                      ++.|+...++.|  -.....++.|.|.   ++|  +|.+.+...+..+     .....+    +..-....|++|++.++
T Consensus        97 rl~~~~~~~~~~~~~~~~~v~~~l~~~---~~g--gT~lt~~~~~~~~-----~~~~~~~~~~~~~Gw~~~L~~Lk~~le  166 (178)
T 1xuv_A           97 RIISTFEFEGLPEKGHVILDTARFEAL---PGD--RTKLTSHSVFQTI-----EDRDGMLQSGMEEGINDSYERLDELLE  166 (178)
T ss_dssp             EEEEEEEETTSSSSCCCEEEEEEEEEE---TTT--EEEEEEEEECSSH-----HHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCCCCCcEEEEEEEEEc---CCC--CEEEEEEEEeCCH-----HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            899988654333  2357889999998   423  4999988876431     112222    23556778999999988


Q ss_pred             hcc
Q 047053          185 ASF  187 (192)
Q Consensus       185 ~~~  187 (192)
                      ...
T Consensus       167 ~~~  169 (178)
T 1xuv_A          167 KMK  169 (178)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            653

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=98.95  E-value=1.6e-08  Score=76.26  Aligned_cols=130  Identities=15%  Similarity=0.009  Sum_probs=89.7

Q ss_pred             CceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           35 NTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        35 ~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      ...+..+++.|+||+++||+++.|+..+..|.+.+      +++..+|....+.+..|    .+.-++.++++ ++++.|
T Consensus         6 ~~~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~------~~~~~~G~~~~~~~~~g----~~~~~v~e~~p-~~~l~~   74 (143)
T 1xn6_A            6 TLNDIKQTIVFNASIQKVWSVVSTAEGIASWFMPN------DFVLEVGHEFHVQSPFG----PSPCKVLEIDE-PNHLSF   74 (143)
T ss_dssp             SCCCEEEEEEESSCHHHHHHTTSCSHHHHTTSCCB------CCCCCTTCEECBCCTTC----CCCEEEEEEET-TTEEEE
T ss_pred             CCCEEEEEEEEcCCHHHHHHHHhCHhHHHHhcCCC------CcCcCCCCEEEEEEcCC----CceEEEEEEeC-CCEEEE
Confidence            34567788999999999999999999999998762      23334555544544323    25678999998 778999


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCC-C-----CCHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPE-G-----NSDDDTRLFVGTVVKLNL-ARLADLAMA  185 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~-g-----~~~~~~~~~l~~~~~~~L-~~L~~~ae~  185 (192)
                      +...+     ....+++|.|.   ++|  +|.+.+..+ +...+ .     .........+.......| ++|++.+|.
T Consensus        75 ~~~~~-----~~~~~~~l~~~---~~g--~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~~L~~~le~  143 (143)
T 1xn6_A           75 SWDTD-----GWVVSFDLKDL---GDN--KTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVEG  143 (143)
T ss_dssp             EETTT-----TEEEEEEEEEE---ETT--EEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHHC
T ss_pred             EEeCC-----CEEEEEEEEEC---CCC--cEEEEEEEEccCccccccccccchhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence            88654     56788999998   343  488888776 33221 1     112233445566678889 999998763

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=98.94  E-value=2.2e-08  Score=77.85  Aligned_cols=136  Identities=7%  Similarity=-0.059  Sum_probs=84.4

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEe---ecCCC-C-ceeEEEEEEEecCCce
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNI---ISGPP-A-TTSTERLEMLDDENHI  111 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~---~~G~p-~-~~vkErL~~iD~~~~~  111 (192)
                      .+.+-+++|++|+++||+++.|+.++..|.|.+...+-. ++   |..| +..   .-|.. . ....-|. .+|+++++
T Consensus         7 i~v~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~-~~---~~~~-~~~a~l~vg~~~~~~~~~s~~-~~~~~~~~   80 (161)
T 3p9v_A            7 IELNRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDL-GN---NAYR-WEMEKVGVDKHAIQSVYACTY-HADKEAGK   80 (161)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEEEEE-ET---TEEE-EEECCBSSGGGCBCCEEEEEE-EEETTTTE
T ss_pred             EEEEEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEEEEc-CC---CceE-EEEEEEeeeeEEEEEEEEEEE-EEcCCCCE
Confidence            455667889999999999999999955555543333222 23   3222 333   22211 1 1233333 36676889


Q ss_pred             EEEEEEeCCCCc-ceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          112 LSFRVLGGDHRL-QNYRSVTSVNDFISEETGEVYCVVLESYVVDIP---EGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       112 ~~Y~ileg~~p~-~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~---~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      +.|+.++|  |+ +...++.++.|.   ++|  .|.|.|..+|+..   .+.....+..+++..+...+++..+.|..
T Consensus        81 I~~~~~~g--~~~~~l~g~w~f~p~---~~g--~t~V~~~~~~e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra~~  151 (161)
T 3p9v_A           81 ITWSPIKG--EGNGVVSGSWTLSAK---GDN--ATAVKFQTSAELTVPLPSLLKLAISPVIKHEFNSLVDTYMANLKK  151 (161)
T ss_dssp             EEEEECTT--STTEEEEEEEEEEES---SSS--CEEEEEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEecC--ccceeEEEEEEEEEC---CCC--eEEEEEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987  55 788999999998   454  3999999998875   33333334444444444444444444443

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=98.87  E-value=2.3e-07  Score=71.74  Aligned_cols=146  Identities=10%  Similarity=-0.049  Sum_probs=93.2

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcc-cceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCc
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNF-IRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENH  110 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~-v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~  110 (192)
                      .......+++.|+||+++||+++.|...+..|++. --++...+++-.+|..-.+.+.  +|.. ....-++.++++ ++
T Consensus        11 ~~~~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~v~e~~p-~~   88 (171)
T 2il5_A           11 NEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKV-NVIEGIYESLVM-DE   88 (171)
T ss_dssp             CEEEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCE-EEEEEEEEEEET-TT
T ss_pred             CCCceEEEEEEeCCCHHHHHHHHCCHHHHHhccCCCCccceEEEecccCCCEEEEEEECCCCCE-EEEEEEEEEEcC-CC
Confidence            34567888999999999999999998888888642 1123333344445554444443  3421 245678899987 77


Q ss_pred             eEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCC-CCCH-------HHHHHHHHHHHHHHHHHHHH
Q 047053          111 ILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPE-GNSD-------DDTRLFVGTVVKLNLARLAD  181 (192)
Q Consensus       111 ~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~-g~~~-------~~~~~~l~~~~~~~L~~L~~  181 (192)
                      ++.|+...++.|-.....++.+.+.   ++|  +|.+.+..+ +.... +...       ......+..-....|++|++
T Consensus        89 rl~~~~~~~~~~~~~~~~~~~l~~~---~~g--~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~  163 (171)
T 2il5_A           89 YVKMTIGMPGLSETQDVIEVEFFER---ETG--GTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYH  163 (171)
T ss_dssp             EEEEEESCC--CCCCEEEEEEEEEC---SSS--SEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCCCcEEEEEEEEEC---CCC--CEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHHH
Confidence            8999987544443357888999987   442  388888775 43211 1111       12233445556778999999


Q ss_pred             HHHhc
Q 047053          182 LAMAS  186 (192)
Q Consensus       182 ~ae~~  186 (192)
                      .++..
T Consensus       164 ~le~~  168 (171)
T 2il5_A          164 VIETS  168 (171)
T ss_dssp             HHHTT
T ss_pred             HHhhc
Confidence            88764

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.86  E-value=8.3e-08  Score=74.60  Aligned_cols=149  Identities=10%  Similarity=0.085  Sum_probs=94.3

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCc-ccceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCc
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKN-FIRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENH  110 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~  110 (192)
                      |......+++.|+||+++||+++.|...+..|++ .--.+...+++-.+|..-++.+.  +|. .....-++.++++ ++
T Consensus         9 ~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~-~~~~~~~v~e~~p-~~   86 (172)
T 2ldk_A            9 VEALSFSIVAEFDADVKRVWAIWEDPRQLERWWGPPTWPATFETHEFTVGGKAAYYMTGPDGT-KARGWWQFTTIEA-PD   86 (172)
T ss_dssp             TTTTEEEEEEEESSCHHHHHHHHHCHHHHHTTSSCTTSCEEEEEECCSTTCEEEEEEECTTSC-EEEEEEEEEEECS-SS
T ss_pred             CCCceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCcccceEEEeecCCCEEEEEEECCCCC-EEeeEEEEEEEcC-CC
Confidence            3445677889999999999999999888877754 21122233344445544444443  332 1246778999987 77


Q ss_pred             eEEEEEEeCC---CC---cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          111 ILSFRVLGGD---HR---LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       111 ~~~Y~ileg~---~p---~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      ++.|+....+   .|   ......++.|.|.   ++   +|.+.+...+.++. .........+..-....|++|++.++
T Consensus        87 rl~~~~~~~~~~g~p~~~~~~~~v~~~l~~~---~~---gT~lt~~~~~~~~~-~~~~~~~~~~~~Gw~~~L~~L~~~le  159 (172)
T 2ldk_A           87 HLEFDDGFADEHGAPVDELGVTHATVKLEPL---EN---RTRMTIISTFESEE-QMQKMAEMGMEEGMREAIEQIDAVLS  159 (172)
T ss_dssp             EEEEEEEEBCSSCCBCTTTCEEEEEEEEEEE---TT---EEEEEEEEEESCHH-HHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeecCCCCCccCCCccEEEEEEEEEc---CC---CEEEEEEEEcCCHH-HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            7888876432   22   2357788999887   44   48988887764321 00011111235557789999999998


Q ss_pred             hccccCC
Q 047053          185 ASFKSTE  191 (192)
Q Consensus       185 ~~~~~~~  191 (192)
                      ......|
T Consensus       160 ~~~~~~~  166 (172)
T 2ldk_A          160 EPANALE  166 (172)
T ss_dssp             CCSSSCC
T ss_pred             HhHHHHh
Confidence            8765543

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.82  E-value=1.8e-07  Score=70.49  Aligned_cols=130  Identities=8%  Similarity=0.009  Sum_probs=87.2

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCcc-Ccc-cceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCceEE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKY-KNF-IRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w-~p~-v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      ...+++.|+||+++||+++.|...+..| .+. --++...+++-.+|..-.+.+.  +|.....+.-++.++++ ++++.
T Consensus         2 ~i~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~v~~~~p-~~~l~   80 (142)
T 2lcg_A            2 NITVETTVAAPVGKVWRAYTTPEDIKQWNAASDDWHTTAATVDLREGGAFSSRMEAKDGSMGFDFAGTYTKVVE-NKRIE   80 (142)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHHHHHHHCCSSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEET-TTEEE
T ss_pred             eEEEEEEeCCCHHHHHHHhCCHHHHhcCCCCCCCccceeeEEccccCCEEEEEEEcCCCCceeeeEEEEEEEcC-CCEEE
Confidence            3567899999999999999999888888 542 1122233344456665555554  23211246778999987 77899


Q ss_pred             EEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          114 FRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       114 Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      |+.-    +   ...++.|.|.   ++   +|.+.+..+...  ....    ..+..-....|++|++.++...
T Consensus        81 ~~~~----g---~~~~~~l~~~---~~---gT~l~~~~~~~~--~~~~----~~~~~Gw~~~L~~L~~~le~~~  135 (142)
T 2lcg_A           81 YAFG----D---RTAKVEFLEA---PQ---GVTVRVSFVAET--EYPV----EQQQQGWQAILNNFKRHVESHL  135 (142)
T ss_dssp             EEET----T---EEEEEEEEEE---TT---EEEEEEEEECCS--SSCH----HHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEcC----C---CEEEEEEEEc---CC---CEEEEEEEecCC--HHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            9972    1   7788889887   34   489888876632  2121    2245557778999999988653

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.79  E-value=3.8e-07  Score=71.32  Aligned_cols=143  Identities=10%  Similarity=0.044  Sum_probs=92.4

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcc-cceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCc
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNF-IRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENH  110 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~-v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~  110 (192)
                      +......+++.|+||+++||+++.|...+..|++. --.+...+++..+|..-.+.+.  +|. .....-++.++++ ++
T Consensus         7 ~~~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~-~~~~~~~v~e~~p-~~   84 (178)
T 1xfs_A            7 DAELDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGN-KFPNSGCFLEVTD-EK   84 (178)
T ss_dssp             CTTTEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCC-EEEEEEEEEEEET-TT
T ss_pred             CCCceEEEEEEecCCHHHHHHHhCCHHHHhhCCCCCCeeeeEEEEeeECCcEEEEEEECCCCC-EEEEEEEEEEEeC-CC
Confidence            34456678889999999999999999888888542 1122233345455655555543  332 1245678899987 77


Q ss_pred             eEEEEEEeCC--CCcc------------eeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHH----HHHHH
Q 047053          111 ILSFRVLGGD--HRLQ------------NYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLF----VGTVV  172 (192)
Q Consensus       111 ~~~Y~ileg~--~p~~------------~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~----l~~~~  172 (192)
                      ++.|+..-++  .|..            ....++.|.+.   ++|   |.+.+...+..+     .....+    +..-.
T Consensus        85 rl~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~---~~g---T~l~~~~~~~~~-----~~~~~~~~~~~~~Gw  153 (178)
T 1xfs_A           85 RLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPT---SSG---TRYTACAMHNTP-----GQRKLHEEMGFHEGW  153 (178)
T ss_dssp             EEEEESSEEGGGEECCC-----------CCEEEEEEEEC---SSS---EEEEEEEECSSH-----HHHHHHHTTTHHHHH
T ss_pred             EEEEEEEEcCCCCccccccccccccccccEEEEEEEEEC---CCC---EEEEEEEEcCCH-----HHHHHHHhhhHHHHH
Confidence            7888875221  1211            46788999887   443   888888775421     212222    24557


Q ss_pred             HHHHHHHHHHHHhcccc
Q 047053          173 KLNLARLADLAMASFKS  189 (192)
Q Consensus       173 ~~~L~~L~~~ae~~~~~  189 (192)
                      ...|++|++.++....-
T Consensus       154 ~~~l~~L~~~le~~~~~  170 (178)
T 1xfs_A          154 GTTITQLEELLKQEKAY  170 (178)
T ss_dssp             HHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhhhHH
Confidence            78899999999876543

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.78  E-value=1.3e-07  Score=71.76  Aligned_cols=129  Identities=12%  Similarity=0.018  Sum_probs=86.5

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRV  116 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~i  116 (192)
                      ....+++.|+||+++||+++.|+..+..|.+..      +++..+|..-.+.+..|    .+.-+++++++ ++++.|+.
T Consensus         5 ~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~------~~~~~~Gg~~~~~~~~g----~~~~~v~e~~p-~~~l~~~~   73 (146)
T 1xn5_A            5 PDIKKEVRFNAPIEKVWEAVSTSEGLAFWFMEN------DLKAETGHHFHLQSPFG----PSPCQVTDVER-PIKLSFTW   73 (146)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTSHHHHHTTSCCB------CCCSCTTCEEEEECSSC----EEEEEEEEEET-TTEEEEEE
T ss_pred             cEEEEEEEEcCCHHHHHHHHhChhHHHHhcCCC------CCCccCCCEEEEEecCC----ceEEEEEEEeC-CcEEEEEE
Confidence            456788999999999999999999988897642      23334555544554222    36788999997 77899987


Q ss_pred             EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCCC------CCHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Q 047053          117 LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPEG------NSDDDTRLFVGTVVKLNL-ARLADLAMASF  187 (192)
Q Consensus       117 leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~g------~~~~~~~~~l~~~~~~~L-~~L~~~ae~~~  187 (192)
                      ..     .....++.|.|.   ++|   |.+.+..+ +...+.      .........+..-....| ++|++.++..+
T Consensus        74 ~~-----~~~~~~~~l~~~---~~g---T~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GW~~~l~~~L~~~l~~~~  141 (146)
T 1xn5_A           74 DT-----DGWSVTFHLKEE---ENG---TIFTIVHSGWKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIVELEH  141 (146)
T ss_dssp             TT-----TTEEEEEEEEEC---SSS---EEEEEEEECCCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHHC---
T ss_pred             eC-----CCEEEEEEEEEc---CCC---EEEEEEEEEecCCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence            63     235678899887   443   88888765 332211      112234444566677888 99999887764

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.76  E-value=6.5e-07  Score=66.78  Aligned_cols=124  Identities=13%  Similarity=-0.007  Sum_probs=84.0

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      .++++.|+||+++||+++.|...+..|.+.  .+   +++-.+|..-.+.+.+ .+ ....=++.++++ ++++.|+..+
T Consensus         3 i~~~~~i~ap~e~Vw~altd~~~~~~W~~~--~~---~~~~~~Gg~~~~~~~~-~~-~~~~~~v~~~~p-~~~l~~~~~~   74 (135)
T 3q6a_A            3 IITKMQVDVPRETVFEAFVDPEKIGGFWFS--SS---SERWEQGKTITLRYEE-YD-AELNINIERVED-NQLIAFTWGA   74 (135)
T ss_dssp             EEEEEEESSCHHHHHHHHHCTTTGGGTSSS--EE---SSCCCTTCEEEEECGG-GT-C-CEEEEEEEET-TTEEEEEETT
T ss_pred             EEEEEEeCCCHHHHHHHHcCHHHhcccCCC--CC---cccccCCCEEEEEEcC-cC-ceEEEEEEEEcC-CCEEEEEEcC
Confidence            467899999999999999999999999653  22   3443456555555542 11 123446888987 7789998864


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      |       ..++.+.|.   ++   +|.+.+....-+...  .. .......-....|++|++.+|.-
T Consensus        75 g-------~~~~~l~~~---~~---gT~l~~~~~~~~~~~--~~-~~~~~~~GW~~~l~~L~~~le~g  126 (135)
T 3q6a_A           75 H-------PITIQFEES---EA---GTVVTTTEKDFDTQD--VK-QLLGQKEGWVYMLSCLKVYLEHG  126 (135)
T ss_dssp             E-------EEEEEEEEE---TT---EEEEEEEECCCCSSC--HH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             C-------eEEEEEEEC---CC---CEEEEEEEcCCCcch--HH-HHhhchhCHHHHHHHHHHHHhcC
Confidence            2       788889887   44   488887765322221  22 22334555677899999998864

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.73  E-value=9.1e-07  Score=68.68  Aligned_cols=143  Identities=12%  Similarity=-0.014  Sum_probs=91.2

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcc-cceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCc
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNF-IRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENH  110 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~-v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~  110 (192)
                      |..-...+++.|+||+++||+++.|...+..|.+. --.+...+++-.+|..-++.+.  +|.. ..+.-++.++++ ++
T Consensus        10 ~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p-~~   87 (164)
T 3pu2_A           10 GSATRLEFRRHFAATPEQLWAALTSPALLPAWLFARGWPMTECVFEPHKGGLIRQVWTGPEGRT-RGLTGRVILAEP-PH   87 (164)
T ss_dssp             CBTTEEEEEEEESSCHHHHHHHHHCTTTGGGTSCBTTBCEEEEEECCSTTCEEEEEEECGGGCE-EEEEEEEEEEET-TT
T ss_pred             CCCceEEEEEEECCCHHHHHHHhcCHHHHhhEeCCCCeeeEEEEEeccCCCEEEEEEECCCCCE-EEEEEEEEEEcC-CC
Confidence            44556778899999999999999999999999752 1122233344445543333332  3421 256778889987 77


Q ss_pred             eEEEEEEeCC--CCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHhcc
Q 047053          111 ILSFRVLGGD--HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDT-RLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       111 ~~~Y~ileg~--~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~-~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      ++.|+..-.+  .| .....++.|.+.   ++   +|.+.+...+..++  ..+.. ...+..-...+|++|++.++.+-
T Consensus        88 rl~~t~~~~~~~~~-~~s~vt~~l~~~---~~---gT~l~l~~~~~~~~--~~~~~~~~~~~~GW~~~L~~L~~~l~~~~  158 (164)
T 3pu2_A           88 RLIHSELYDEDWTG-GETLVTLQLLPV---EG---GTELAMAVDYATPE--ARDAVAASAMATEMEEAYRHLDVMLAALE  158 (164)
T ss_dssp             EEEEEEBCC---CC-SCEEEEEEEEEE---TT---EEEEEEEEECSSTT--HHHHHHTSTHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEEEeccCCCCC-CCEEEEEEEEEc---CC---CEEEEEEEEeCCHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            8988875211  22 246788899987   44   49988887765321  11111 12345567788999998888763

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.71  E-value=5.6e-07  Score=68.86  Aligned_cols=134  Identities=11%  Similarity=-0.017  Sum_probs=85.8

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEE
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      .+.-...+++.|+||+++||+++.|...+..|.+.   +   +++-.+|..-.+....|   ..+.=++.++++ ++++.
T Consensus         6 ~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~---~---~~~~~~Gg~~~~~~~~g---~~~~g~v~e~~p-~~~l~   75 (151)
T 3q63_A            6 TENRTVVVERQISHPPEKLWRALTQPHLIEEWLMK---N---DFKPAVGHRFNISADWG---GVLDCEVLAVEP-NKTLS   75 (151)
T ss_dssp             ---CEEEEEEEESSCHHHHHHHHHCHHHHHHHSCE---E---CCCSSTTCEEEEECTTS---CEEEEEEEEEET-TTEEE
T ss_pred             CCCCeEEEEEEeCCCHHHHHHHHcCHHHHHhhcCc---C---CCccCCCCEEEEECCCC---CEEEEEEEEEeC-CCEEE
Confidence            44556778899999999999999999888899873   2   23334554433432223   256778888987 77899


Q ss_pred             EEEEeCC---CCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          114 FRVLGGD---HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       114 Y~ileg~---~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      |+...++   .+-..-..++.|.|.   ++|   |.+......-+++.  .. ....+..-....|++|++.++..
T Consensus        76 ~~~~~~~~~~~~~~~s~v~~~l~~~---~~g---T~l~l~~~g~~~~~--~~-~~~~~~~GW~~~L~~L~~~le~~  142 (151)
T 3q63_A           76 YTWNLAHQDPAFDLRSVVTFTLTPT---PTG---THLRMEQSGFRPDQ--RR-AYGGAKMGWPQFFEKLEQLLDRT  142 (151)
T ss_dssp             EECBBCCSSTTTCBCCEEEEEEEEC---SSS---EEEEEEEECCCTTC--HH-HHHHHHHHHHHHHHHHHHHHC--
T ss_pred             EEEecCCCCCCCCCCeEEEEEEEEc---CCC---EEEEEEEeCCCcch--HH-HHHhhhhCHHHHHHHHHHHHhcc
Confidence            8886532   222345678888887   444   88887765332222  22 22233455667899999988754

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.66  E-value=1.5e-06  Score=65.85  Aligned_cols=128  Identities=13%  Similarity=0.023  Sum_probs=82.5

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCcc-Cccc-ceeEeecCCCCC-CeEEEEEee--cCCCCceeEEEEEEEecCCceEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKY-KNFI-RSCTMKVGAGEV-GSVRDVNII--SGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w-~p~v-~s~~~~eGdG~v-G~VR~~~~~--~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      ..+++.|+||+++||+++.|...+..| .+.- -.+...+++-.+ |..+. .+.  +|.....+.-++.++++ ++++.
T Consensus         3 i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~-~~~~~~G~~~~~~~g~v~e~~p-~~~l~   80 (144)
T 2lgh_A            3 ISIEAHIEQEIEAVWWAWNDPDCIARWNAASSDWHTTGSRVDLVVGGRFCH-HMAAKDGSAGFDFTGTFTRVEA-PTRLS   80 (144)
T ss_dssp             EEEEEEESSCHHHHHHHHHCHHHHTTSSSCSTTEEEEEEEECCSTTCEEEE-EEEETTSSCEEEEEEEEEEEET-TTEEE
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhccCCCCCCcccceEEECCCCCCEEEE-EEECCCCCceEEeEEEEEEEeC-CCEEE
Confidence            567899999999999999999888888 6420 022222333333 44443 332  34201235667889987 77899


Q ss_pred             EEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          114 FRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       114 Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      |+.. |     ....++.|.|.   ++   +|.+....++..  ....    ..+..-....|++|++.++..
T Consensus        81 ~~~~-~-----~~~~~~~l~~~---~~---gT~l~~~~~~~~--~~~~----~~~~~Gw~~~L~~L~~~le~~  135 (144)
T 2lgh_A           81 FVMD-D-----GREVDVQFASE---PG---GTWVQETFDAET--SHTP----AQQQAGWQGILDNFKRYVEAA  135 (144)
T ss_dssp             EEET-T-----CCEEEEEEEEE---TT---EEEEEEEEECCT--TSCH----HHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEec-C-----CcEEEEEEEEc---CC---CEEEEEEEECCC--HHHH----HHHHHHHHHHHHHHHHHHhhC
Confidence            9963 3     36788999987   34   488877766532  1121    223445677899999988864

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.65  E-value=1.2e-06  Score=68.47  Aligned_cols=129  Identities=17%  Similarity=0.140  Sum_probs=79.6

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCC--c-
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDEN--H-  110 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~--~-  110 (192)
                      |-+.+.+.+++|++|+++||++++|+.+++.|.+.++++....++     -+...   ..|...++=+   +++.+  . 
T Consensus        24 ~~m~~~~~si~I~ap~eeVy~~~~D~e~lP~W~~~l~~~~~~~~~-----~w~a~---~~p~G~v~v~---~~~~~~~gv   92 (156)
T 2qpv_A           24 PVMQSRIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEADGE-----DWIAK---GGPLGEVRVN---FAPHNEFGV   92 (156)
T ss_dssp             CCCCEEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEEETT-----EEEEE---CSSSCEEEEE---ECCCCSSCB
T ss_pred             CCccceEEEEEEcCCHHHHHHHHHChhhHHHHHHhhhhhcccCCC-----cEEEe---ccCCCcEEEE---EecCCCceE
Confidence            334455778999999999999999999999999999876222122     12222   1111222222   22222  1 


Q ss_pred             eEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          111 ILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       111 ~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      ...|..+.+..   .-.+.++|.|.   ++   +|.|.++. +. +++.....++. -..++...|++||+.+|.
T Consensus        93 ~d~~~~l~~g~---~~~~~~rv~p~---g~---GTeV~~tl-~~-~pg~~~~~~~~-~~~~v~~dL~~LK~l~E~  155 (156)
T 2qpv_A           93 IDHVVTLPDGL---KVYNALRVTPN---GS---GTEVSFTL-LR-LEGMTDEDFEQ-DASAITADLEMLKSLLEA  155 (156)
T ss_dssp             CCEEEECTTSC---EEEEEEEEEEE---TT---EEEEEEEE-EC-CTTCCHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEecCCCc---EEEEEEEEEeC---CC---CEEEEEEE-ec-CCCCChhhhhh-hHHHHHHHHHHHHHHHhC
Confidence            12344443222   23446888887   44   49999988 43 34555554532 244689999999999984

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=98.65  E-value=8.1e-08  Score=73.51  Aligned_cols=129  Identities=12%  Similarity=-0.034  Sum_probs=85.2

Q ss_pred             CceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           35 NTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        35 ~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      ......+++.|+||+++||+++.|+..+..|.+.+      +++..+|..-.+.+..|    .+.-++.++++ ++++.|
T Consensus         8 ~~~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~------~~~~~~Gg~~~~~~~~g----~~~~~v~e~~p-~~~l~~   76 (152)
T 2kew_A            8 ALPDITKSITLEAPIQKVWETVSTSEGIAKWFMPN------DFQLKEGQEFHLQSPFG----PSPCKVLAVQA-PTELSF   76 (152)
T ss_dssp             SSCCEEEEEEECSCHHHHHHHSSSSHHHHHHHCSC------CCCSCSSCCBCSSSSCC----SCCBEEEEEET-TTEEEE
T ss_pred             cccEEEEEEEECCCHHHHHHHHhCHHHHHHhcCCC------CCCCCCCCEEEEEecCC----ceEEEEEEEeC-CcEEEE
Confidence            34467788999999999999999999988887651      23323444433434323    24567888987 678999


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCC-CCC-----HHHHHHHHHHHHHHHH-HHHHHHHHh
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPE-GNS-----DDDTRLFVGTVVKLNL-ARLADLAMA  185 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~-g~~-----~~~~~~~l~~~~~~~L-~~L~~~ae~  185 (192)
                      +...+     ....++.|.|.   ++|   |.+.+..+ +...+ ...     ..........-....| ++|++.++.
T Consensus        77 ~~~~~-----~~~~~~~l~~~---~~g---T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~le~  144 (152)
T 2kew_A           77 EWDTE-----GWVVTFQLEDL---GEK---TGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVEE  144 (152)
T ss_dssp             ECTTS-----CCEEEEEEECC---SSC---EEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHTC
T ss_pred             EEccC-----CEEEEEEEEEC---CCC---EEEEEEEEeccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            86543     46778889887   443   88887654 44221 111     2223344566678888 999988875

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.65  E-value=1e-06  Score=66.73  Aligned_cols=130  Identities=8%  Similarity=0.097  Sum_probs=84.1

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCcc-Ccc-cceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCceEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKY-KNF-IRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w-~p~-v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      ..+++.|+||+++||+++.|...+..| .+. --.+...+++-.+|..-.+.+.  +|.....+.-++.++++ ++++.|
T Consensus         4 i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p-~~~l~~   82 (144)
T 2l8o_A            4 ITVEVTVYAAIEKVWKYWNEPAHIMKWCQASPEWHVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVYDQVKT-NDLIEY   82 (144)
T ss_dssp             EEEEEEECSCHHHHHHHHHCHHHHHHHSTTCTTCEEEEEECCCSTTCEEEEEEECTTSSCEEEEEEEEEEEET-TTEEEE
T ss_pred             EEEEEEECCCHHHHHHHHCCHHHHhhccCCCCCcccceeEEccCCCCEEEEEEECCCCCceeeeeEEEEEEeC-CCEEEE
Confidence            567899999999999999999888888 642 1123333344334433333333  34201245668899997 778999


Q ss_pred             EEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          115 RVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       115 ~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      +.. |     ....++.|.+.   ++|   |.+.....+  +.....    ..+..-....|++|++.++...
T Consensus        83 ~~~-g-----~~~v~~~l~~~---~~g---T~l~~~~~~--~~~~~~----~~~~~Gw~~~L~~L~~~le~~~  137 (144)
T 2l8o_A           83 TIG-D-----GRKVRIVFTHT---GDT---TNIVESFDP--EETNPR----ELQQSGWQAILNSFKSYTENNL  137 (144)
T ss_dssp             EET-T-----CCEEEEEEEEC---SSS---EEEEEEECC--CSSSCH----HHHHHHHHHHHHHHHHHHGGGT
T ss_pred             EeC-C-----CeEEEEEEEEc---CCC---EEEEEEEeC--CCHHHH----HHHHHHHHHHHHHHHHHHHhHh
Confidence            963 3     36788999887   343   888777655  222222    2234456778999999988764

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.62  E-value=8.2e-07  Score=68.60  Aligned_cols=140  Identities=11%  Similarity=-0.036  Sum_probs=88.4

Q ss_pred             ceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccc--eeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCce
Q 047053           36 TCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIR--SCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENHI  111 (192)
Q Consensus        36 ~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~--s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~~  111 (192)
                      .-...+++.|+||+++||+++.|...+..|.+...  .+...+++-.+|..-.+.+.  +|. ...+.=++.++++ +++
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~g~~~~~~~~d~~~Gg~~~~~~~~~~G~-~~~~~g~v~e~~p-~~r   85 (162)
T 3q64_A            8 HSTFIIERLYPAPPSKVFFALGNADAKRRWFTDPDNPMPGRFEMDFRVGGKEVNAGGPKDGP-IHVYTATYQDIVP-DQR   85 (162)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHHHHHHSSCTTSCCGGGCEECCSTTCEEEEEECCTTSC-CEEEEEEEEEEET-TTE
T ss_pred             cceEEEEEEeCCCHHHHHHHHCCHHHHhhcCCCCCCccceEEEECCccCCEEEEEEECCCCC-EEEEEEEEEEEcC-CCE
Confidence            34567889999999999999999888888874321  11112233334444334443  342 1256778899987 777


Q ss_pred             EEEEEEe--CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          112 LSFRVLG--GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       112 ~~Y~ile--g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      +.|+...  ...+......++.|.|.   ++   +|.+.+.....++++..  .. ..+..-....|++|++.++..
T Consensus        86 l~~~~~~~~~~~~~~~s~v~~~l~~~---~~---gT~lt~~~~~~~~~~~~--~~-~~~~~GW~~~L~~L~~~le~~  153 (162)
T 3q64_A           86 IVYSYDMLFGETRISVSLATIQLFAE---GE---GTRLVLTEQGAFLDGHD--TP-STREHGTGVLLDLLDAFLDKT  153 (162)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEE---TT---EEEEEEEEEEEEETTSS--CH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCCceEEEEEEEEc---CC---CEEEEEEEEecCccchh--HH-HHHHHHHHHHHHHHHHHHhhc
Confidence            8888753  12234456788889887   44   48888876643222111  11 234556778899999988764

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.61  E-value=7e-07  Score=68.94  Aligned_cols=142  Identities=10%  Similarity=0.036  Sum_probs=89.4

Q ss_pred             ceeEEEEEEEcCChhhHhhhhcCCCCCCccCcc-cceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCceE
Q 047053           36 TCTSLITQKINTPLSFVWPFVRDFTNPDKYKNF-IRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENHIL  112 (192)
Q Consensus        36 ~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~-v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~~~  112 (192)
                      .....+++.|+||+++||+++.|...+..|++. --++...+++-.+|..-++.+.  +|..  .+.-++.++++ ++++
T Consensus         7 ~~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~--~~~g~v~e~~p-~~rl   83 (164)
T 2l9p_A            7 KNKIIFTRTFSAPINKVFDAYTKRELFEQWFHPQDASVTVYDFNATKGGSAFYAIQAPQMIS--YTIAEYLQVDA-PYYI   83 (164)
T ss_dssp             SSEEEECCEESSCHHHHHHHHHCHHHHTTTCCCTTCEEEEEECCCSTTEEEEEEEEETTEEE--EEEEEESCCBT-TTEE
T ss_pred             CceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCceeeEEEEeccCCCEEEEEEECCCCCE--EEEEEEEEEcC-CCEE
Confidence            456778899999999999999998888888642 1122333455445544333332  3311  16778899987 7778


Q ss_pred             EEEEEeCC---CC---cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 047053          113 SFRVLGGD---HR---LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTR-LFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       113 ~Y~ileg~---~p---~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~-~~l~~~~~~~L~~L~~~ae~  185 (192)
                      .|+...++   .|   ......++.|.+.   ++|   |.+.....+..+.  ..+.+. ..+..-....|++|++.++.
T Consensus        84 ~~t~~~~~~~g~p~~~~~~~~v~~~l~~~---~~g---T~l~~~~~~~~~~--~~~~~~~~~~~~Gw~~~L~~L~~~le~  155 (164)
T 2l9p_A           84 EYLDYFATSKGEKDTSMPGMHITLNFEEV---KGK---TTVTSTSTFPTES--AAQQAIDMGVETGMNSTLNQLEKLLNQ  155 (164)
T ss_dssp             EEEEEEEBTTBSCCSSSCCEEEEEEECCC---SSS---EEEEEEEECSSTT--HHHHHHHHTHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEecCCCCCccCCCCceEEEEEEEEC---CCC---EEEEEEEEcCCHH--HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            88875421   12   2346788888886   343   8877776654321  111111 12344567789999999988


Q ss_pred             ccc
Q 047053          186 SFK  188 (192)
Q Consensus       186 ~~~  188 (192)
                      +..
T Consensus       156 ~~~  158 (164)
T 2l9p_A          156 KLE  158 (164)
T ss_dssp             SCC
T ss_pred             hhh
Confidence            764

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.60  E-value=9.6e-07  Score=69.05  Aligned_cols=140  Identities=11%  Similarity=-0.006  Sum_probs=88.3

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCc-ccceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCc
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKN-FIRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENH  110 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~  110 (192)
                      +..-...+++.|+||+++||+++.|...+..|++ .--.+...+++-.+|..-++.+.  +|.. ....-++.++++ ++
T Consensus        13 ~~~~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p-~~   90 (175)
T 2lf2_A           13 KENKTITIKREFAAVRAIVWEAFTRAEILDQWWAPKPWKAKTKSMDFKEGGTWLYAMVGPNGEE-HWSICEYAIIKP-IE   90 (175)
T ss_dssp             TTTTEEEEEEEESSCHHHHHHHHTCHHHHHHSSSSSSSEEEEEEECCSTTCEEEEEEECSSSCE-EEEEEEECCCCS-SS
T ss_pred             CCCceEEEEEEEcCCHHHHHHHhCCHHHHhhCcCCCCccceEEEEeccCCCEEEEEEECCCCCE-EEeEEEEEEEcC-CC
Confidence            4455677889999999999999999888888854 21122233344344444333333  3421 246778999987 77


Q ss_pred             eEEEEEEeCC---CC---cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHH----HHHHHHHHHHHHH
Q 047053          111 ILSFRVLGGD---HR---LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLF----VGTVVKLNLARLA  180 (192)
Q Consensus       111 ~~~Y~ileg~---~p---~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~----l~~~~~~~L~~L~  180 (192)
                      ++.|+...++   .|   +.....++.|.+.   ++   +|.+.....+..     .+....+    +..-....|++|+
T Consensus        91 rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~---~~---gT~l~~~~~~~~-----~~~~~~~~~~~~~~Gw~~~L~~L~  159 (175)
T 2lf2_A           91 RFTGKDGFTDASGKLNTEMPRSNWDMRFIDK---GE---ITEVQYHISYDD-----VAQLEATIQMGFKEGITMAMENLD  159 (175)
T ss_dssp             EEEEEEEEESSTTCCCTTSCCEEEEEEEEEE---TT---EEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCCCcCCCCCcEEEEEEEEEC---CC---CEEEEEEEecCC-----HHHHHHHHHHhHHHHHHHHHHHHH
Confidence            7888875321   22   2357788999987   44   488777766532     1212221    3445677889999


Q ss_pred             HHHHhc
Q 047053          181 DLAMAS  186 (192)
Q Consensus       181 ~~ae~~  186 (192)
                      +.++..
T Consensus       160 ~~le~~  165 (175)
T 2lf2_A          160 ELLVSG  165 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            988764

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.59  E-value=1.3e-06  Score=66.43  Aligned_cols=136  Identities=9%  Similarity=-0.049  Sum_probs=85.6

Q ss_pred             eEEEEEEEcCChhhHhhhhcCCCCCCccCcc-cceeE--eecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCceE
Q 047053           38 TSLITQKINTPLSFVWPFVRDFTNPDKYKNF-IRSCT--MKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENHIL  112 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v~df~~~~~w~p~-v~s~~--~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~~~  112 (192)
                      ...+++.|+||+++||+++.|...+..|.+. --.+.  ..+++-.+|..-.+.+.  +|. ...+.=++.++++ ++++
T Consensus         3 ~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~-~~~~~g~v~e~~p-~~~l   80 (152)
T 3eli_A            3 DLRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQ-RYKVSGQVTHVKP-PQSV   80 (152)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCC-EEEEEEEEEEEET-TTEE
T ss_pred             eEEEEEEECCCHHHHHHHHcCHHHHhhccCCCCcccccceeEEcccCCcEEEEEEECCCCC-EEEEEEEEEEEcC-CCEE
Confidence            4568899999999999999998888888652 11111  12234345544444443  342 1256778899987 7788


Q ss_pred             EEEEEeCCC-C--cceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          113 SFRVLGGDH-R--LQNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       113 ~Y~ileg~~-p--~~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      .|+....+. +  -.....++.|.+.   ++|   |.+..... +..     .+ .......-....|++|++.++-.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~l~~~---~~g---T~l~l~~~~~~~-----~~-~~~~~~~GW~~~L~~L~~~l~~~~  147 (152)
T 3eli_A           81 GFTWGWHDDDDRRGAESHVMFIVEPC---AKG---ARLILDHRELGD-----DE-MSLRHEEGWTSSLRKLAAELALEH  147 (152)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECCBC-----C---EEEEEEEESCSC-----HH-HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeecCCCCCCCCcEEEEEEEEEC---CCC---EEEEEEEccCCC-----HH-HHHHHHHHHHHHHHHHHHHHhhhh
Confidence            888764322 1  2356677788786   443   88877544 332     12 233456667889999999887543

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.57  E-value=1.4e-06  Score=67.17  Aligned_cols=139  Identities=10%  Similarity=-0.048  Sum_probs=86.0

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCccc--ceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCceE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFI--RSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENHIL  112 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v--~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~~~  112 (192)
                      -...+++.|+||+++||+++.|...+..|.+..  -.+...+++-.+|..-++.+.  +|.. ..+.=++.++++ ++++
T Consensus         8 ~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p-~~rl   85 (161)
T 3rd6_A            8 STFTIERTYPQSPDRVFHAFADKATVRRWRVDGDGFTVAEFSFDFRVGGGEVSRFSYGGGPE-VRLDAQFQDIVP-DQRI   85 (161)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHHHHHHHTCCCCC---CEEEECCSTTCEEEEEECSTTSCC-EEEEEEEEEEET-TTEE
T ss_pred             ceEEEEEEECCCHHHHHHHhcCHHHHhhccCCCCCceeeEEEEccCcCCEEEEEEECCCCCE-EEEEEEEEEEcC-CCEE
Confidence            456788899999999999999988888887422  112222344344544444443  3421 246778889987 6778


Q ss_pred             EEEEEe--CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          113 SFRVLG--GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       113 ~Y~ile--g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      .|+..-  ...+......++.|.+.   ++   +|.+.+..+.-++++..  .. .....-....|++|++.++..
T Consensus        86 ~~~~~~~~~~~~~~~s~v~~~l~~~---~~---gT~lt~~~~~~~~~~~~--~~-~~~~~GW~~~L~~L~~~le~~  152 (161)
T 3rd6_A           86 VFSYRMAIGPQPMSASLTTVELTPS---GD---GTRLTYTEQGAFFDGVD--SA-KGREEGTRGLLEALAAELQKW  152 (161)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEEEE---TT---EEEEEEEEEEEEETTCC--CH-HHHHHHHHHHHHHHHHHC---
T ss_pred             EEEEEecCCCCCCCceEEEEEEEEC---CC---CEEEEEEEEecCcchhh--hH-HHHHHHHHHHHHHHHHHHhhc
Confidence            888752  22244456788889887   44   48888876643222111  11 234556778899999887753

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.54  E-value=1.5e-06  Score=69.14  Aligned_cols=127  Identities=9%  Similarity=0.001  Sum_probs=84.6

Q ss_pred             CCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceE
Q 047053           33 SPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHIL  112 (192)
Q Consensus        33 ~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~  112 (192)
                      .++.....+++.|+||+++||+++.|...+..|++......+.  .|  |.+| +.+. +   ....-++.++++ ++++
T Consensus        32 ~~~~~~i~~~~~i~Ap~e~VW~altdp~~l~~W~~~~~~~d~~--~G--g~~~-~~~~-~---~~~~~~v~e~~p-~~rl  101 (184)
T 2nn5_A           32 ENQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGELG--VN--GFWR-FILP-D---FEETMPFTDYAE-EKYL  101 (184)
T ss_dssp             ETTEEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEECS--TT--CEEE-EEET-T---EEEEEEEEEEET-TTEE
T ss_pred             CCCCcEEEEEEEeCCCHHHHHHHHcCHHHHHHhCCCccccccC--CC--CEEE-EEEe-C---CCceEEEEEecC-CCEE
Confidence            4555778889999999999999999999999998754332322  22  4444 4443 2   234567888987 6678


Q ss_pred             EEEEEeCCCCcceeEEEEEEEe-eecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          113 SFRVLGGDHRLQNYRSVTSVND-FISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       113 ~Y~ileg~~p~~~y~ati~v~p-~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      .|+.-       ....++.|.| .   ++   +|.+.+.-.+...-.....   . ........|++|++.++.-
T Consensus       102 ~~~~~-------~~~v~~~l~~~~---~~---gT~l~~~~~~~~g~~~~~~---~-~~~GW~~~L~~Lk~~le~g  159 (184)
T 2nn5_A          102 GVTWD-------TGIIYFDLKEQA---PH---QTLLVFSESLPENFTTPRH---K-DIAGWSIVLNRLKQVVETP  159 (184)
T ss_dssp             EEEET-------TEEEEEEEEEEE---TT---EEEEEEEEEECTTCSSCHH---H-HHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEc-------CeEEEEEEEECC---CC---CEEEEEEEeccCCccchhh---H-HHHHHHHHHHHHHHHHhcC
Confidence            88763       2677888988 6   34   4888887433321111111   1 3455677899999999863

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=98.51  E-value=1.8e-06  Score=68.85  Aligned_cols=134  Identities=12%  Similarity=0.105  Sum_probs=89.1

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCC------C--------CceeE
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGP------P--------ATTST   99 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~------p--------~~~vk   99 (192)
                      -......+++.|+||+++||+++.|...+..|.+..      +++-.+|..-.+.+.++.      |        ...+.
T Consensus        16 ~~~~~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~~------~~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~   89 (191)
T 2k5g_A           16 LDAQSIRFERLLPGPIERVWAWLADADKRARWLAGG------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVAR   89 (191)
T ss_dssp             SCCSSEEEEEEESSSSHHHHHHHHCHHHHTTTSCCC------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEE
T ss_pred             cCCCeEEEEEEeCCCHHHHHHHHcCHHHHhhcCCCC------CCCccCCCEEEEEEcCCccccccCcccccccCCCceeE
Confidence            445567788999999999999999999988998752      233345555555554210      1        12466


Q ss_pred             EEEEEEecCCceEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCCCCCHHHHHHHHHHHHHHHHHH
Q 047053          100 ERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPEGNSDDDTRLFVGTVVKLNLAR  178 (192)
Q Consensus       100 ErL~~iD~~~~~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~g~~~~~~~~~l~~~~~~~L~~  178 (192)
                      -++.++++ ++++.|+...++.+ .....++.|.+.   ++|   |.+....+ +..     .+ ....+..-....|++
T Consensus        90 g~v~e~~p-p~rl~~~~~~~~~~-~~~~v~~~l~~~---~~g---T~l~~~~~~~~~-----~~-~~~~~~~GW~~~L~~  155 (191)
T 2k5g_A           90 HTLLRCEP-PRVLALTWGGGAGE-APSEVLFELSEA---GEQ---VRLVLTHTRLAD-----RA-AMLDVAGGWHAHLAV  155 (191)
T ss_dssp             EEEEEEET-TTEEEEECCCCSSS-SCCEEEEEEEEC---SSS---EEEEEEEECCCS-----HH-HHHHHTTTTTTHHHH
T ss_pred             EEEEEecC-CCEEEEEeecCCCC-CCEEEEEEEEEc---CCC---EEEEEEEecCCC-----HH-HHHHHHHhHHHHHHH
Confidence            78899987 77899987654332 246778888887   443   88776655 431     12 223344445678899


Q ss_pred             HHHHHHhcc
Q 047053          179 LADLAMASF  187 (192)
Q Consensus       179 L~~~ae~~~  187 (192)
                      |++.++...
T Consensus       156 L~~~le~~~  164 (191)
T 2k5g_A          156 LAGKLAGQA  164 (191)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHCCCC
Confidence            999888653

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.51  E-value=1.4e-06  Score=67.88  Aligned_cols=140  Identities=11%  Similarity=0.032  Sum_probs=85.5

Q ss_pred             ceeEEEEEEEcCChhhHhhhhcCCCCCCccCc-c-cceeEeecCCCCC-CeEEEE-EeecCCCCceeEEEEEEEecCCce
Q 047053           36 TCTSLITQKINTPLSFVWPFVRDFTNPDKYKN-F-IRSCTMKVGAGEV-GSVRDV-NIISGPPATTSTERLEMLDDENHI  111 (192)
Q Consensus        36 ~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p-~-v~s~~~~eGdG~v-G~VR~~-~~~~G~p~~~vkErL~~iD~~~~~  111 (192)
                      .-...+++.|+||+++||+++.|...+..|.+ . --.+...+++-.+ |..+.. ...+|.. ..+.-++.++++ +++
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~G~~-~~~~g~v~ev~p-~~r   85 (166)
T 3put_A            8 HTTFVIERRLTAPVARVFRAWSTPESKRQWFACHGEWVPLEYALDFRPGGTERNYTADTDGLL-HAYDARYIDIVP-DTR   85 (166)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHHHHHHHTCC---CCSEEEECCSTTCEEEEEEECTTSCE-EEEEEEEEEEET-TTE
T ss_pred             cceEEEEEEECCCHHHHHHHhCCHHHHHhcCCCCCCceeeEEEeCcccCCEEEEEEECCCCCE-EEEEEEEEEEcC-CcE
Confidence            34667889999999999999999888888863 2 0111122233334 445433 2224421 246778899987 677


Q ss_pred             EEEEEEe--CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          112 LSFRVLG--GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       112 ~~Y~ile--g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      +.|+..-  +..+......++.|.+.   ++|   |.+...-...++++...   ......-....|++|++.++.-
T Consensus        86 lv~t~~~~~~~~~~~~s~vt~~l~~~---~~g---T~ltl~~~~~~~~~~~~---~~~~~~GW~~~L~~L~~~le~~  153 (166)
T 3put_A           86 IIYAYEMKLGQTRISASLVTVAFDVE---PSG---TRMVFTEQVVFLDGYGD---NGARLQGTEIGLDNLELFLVRE  153 (166)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEC---SSS---EEEEEEEEEEEETTCCC---TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCCceEEEEEEEEC---CCC---EEEEEEEEecCccchhh---HHHHHHHHHHHHHHHHHHHhcC
Confidence            8887753  12334456778888887   443   87776655322221110   1123455677889999988764

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.39  E-value=1.8e-06  Score=67.42  Aligned_cols=140  Identities=15%  Similarity=0.054  Sum_probs=86.9

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCc-ccceeEeecCCCCC-CeEEEEE-eecCCCCceeEEEEEEEecCCc
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKN-FIRSCTMKVGAGEV-GSVRDVN-IISGPPATTSTERLEMLDDENH  110 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p-~v~s~~~~eGdG~v-G~VR~~~-~~~G~p~~~vkErL~~iD~~~~  110 (192)
                      +..-...+++.|+||+++||+++.|...+..|++ .--.+...++|-.+ |..|..- ..+|.. ..+.-++.++++ ++
T Consensus        10 ~~~~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~G~~-~~~~g~~~ev~p-~~   87 (168)
T 3uid_A           10 LDTLTLTITAEFAAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHDLRPGGRVTYFMTGPDGEK-YAGYWEITAVDE-PH   87 (168)
T ss_dssp             TTTTEEEEEEEESSCHHHHHHHHHSHHHHHHHHCCTTSCCEEEEECCSTTCEEEEEEECTTSCE-EEEEEEEEEEET-TT
T ss_pred             CCCCEEEEEEEEcCCHHHHHHHhCCHHHHhhEeCCCCeeeeEEEEcccCCcEEEEEEECCCCCE-EeeEEEEEEEeC-Cc
Confidence            4556778899999999999999999888777743 21122233344334 5555432 223421 246778899997 67


Q ss_pred             eEEEEEEe----CCC--CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHH----HHHHHHHHHHHHH
Q 047053          111 ILSFRVLG----GDH--RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLF----VGTVVKLNLARLA  180 (192)
Q Consensus       111 ~~~Y~ile----g~~--p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~----l~~~~~~~L~~L~  180 (192)
                      ++.|+..-    |.+  .......++.|.+.   ++   +|.+.....+...     +....+    +..-....|++|+
T Consensus        88 rlv~t~~~~~~~g~p~~~~~~s~vt~~l~~~---~~---gT~lt~~~~~~~~-----~~~~~~~~~g~~~GW~~~L~~L~  156 (168)
T 3uid_A           88 SFSFLDGFADEDFNPNTDLPVSTNVYTFTEH---DG---GTRATYVGTYASA-----EALQQVLDMGVIEGASSAINQID  156 (168)
T ss_dssp             EEEEEEEEECTTSCBCSSCCCEEEEEEEEEE---TT---EEEEEEEEECSCH-----HHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             EEEEEEeeccCCCCcCCCCCcEEEEEEEEEC---CC---CEEEEEEEecCCH-----HHHHHHHHhcHHHHHHHHHHHHH
Confidence            78888642    211  12246788999987   44   4888887655422     112221    3445677888888


Q ss_pred             HHHHhc
Q 047053          181 DLAMAS  186 (192)
Q Consensus       181 ~~ae~~  186 (192)
                      +.++.-
T Consensus       157 ~~l~~~  162 (168)
T 3uid_A          157 ALLTAT  162 (168)
T ss_dssp             HHTCSC
T ss_pred             HHHHhh
Confidence            877654

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=98.26  E-value=2e-05  Score=60.49  Aligned_cols=138  Identities=8%  Similarity=-0.123  Sum_probs=80.1

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCc-cc------ceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCC
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKN-FI------RSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDEN  109 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p-~v------~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~  109 (192)
                      -...+++.|+||+++||+++.|  .+..|++ ..      ..+++. -.|  |.. .+...+|...  ..=++.++++ +
T Consensus         4 ~~i~~~r~~~Ap~e~Vw~A~Td--~l~~W~~p~~~~~~~~~~~~~d-r~G--G~~-~~~~~~G~~~--~~g~v~ev~p-p   74 (155)
T 1zxf_A            4 PFVRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVD-KKG--GRW-YEIDEQGEEH--TFGLIRKVDE-P   74 (155)
T ss_dssp             SCEEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEE-TTT--TEE-ECCCTTTSCC--CCEEEEEEET-T
T ss_pred             ceEEEEEEEeCCHHHHHHHHHh--hHHhhcCCCccccCCCceEEEE-CCC--CEE-EEECCCCCeE--eEEEEEEECC-C
Confidence            3567889999999999999999  3777763 22      234444 333  544 3333344221  1235778987 7


Q ss_pred             ceEEEEEE-eCC---CCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          110 HILSFRVL-GGD---HRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN-SDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       110 ~~~~Y~il-eg~---~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~-~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      +++.|+-- +++   .+-..-..++.|.+.   ++|  .|.+.-.-..-...+. ........+..-....|++|++.++
T Consensus        75 ~rl~~tw~~~~~~~~~~~~~s~vt~~l~~~---~~g--~T~ltl~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~  149 (155)
T 1zxf_A           75 DTLVIGWRLNGFGRIDPDNSSEFTVTFVAD---GQK--KTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKID  149 (155)
T ss_dssp             TEEEEECCCSSSSSCCCSSCCCEEEEEEEE---TTT--EEEEEEEECSSTTSCHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             CEEEEEEecCCCCCCCCCCcEEEEEEEEEC---CCC--cEEEEEEEecccccccchhHHHHHHHHhhHHHHHHHHHHHHh
Confidence            78888843 221   122235678999997   454  3776655442211111 1122222233335788899999888


Q ss_pred             hccc
Q 047053          185 ASFK  188 (192)
Q Consensus       185 ~~~~  188 (192)
                      ...+
T Consensus       150 ~~~a  153 (155)
T 1zxf_A          150 EEGA  153 (155)
T ss_dssp             HHHT
T ss_pred             hhhc
Confidence            7654

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=98.20  E-value=1.1e-05  Score=64.27  Aligned_cols=125  Identities=10%  Similarity=0.038  Sum_probs=82.7

Q ss_pred             CCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceE
Q 047053           33 SPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHIL  112 (192)
Q Consensus        33 ~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~  112 (192)
                      .++.....+++.|++|+++||+++.|...+..|.+..      +++-.+|..-.+.+.       ..=+++++++ ++++
T Consensus        17 ~~~~~~i~~~r~i~Appe~Vw~alTdpe~l~~W~~p~------~~d~~~Gg~~~~~~~-------~~g~v~e~~p-p~rl   82 (181)
T 4fpw_A           17 AGEARSIIIRQRYDAPVDEVWSACTDPNRINRWFIEP------KGDLREGGNFALQGN-------ASGDILRCEP-PRRL   82 (181)
T ss_dssp             TEEEEEEEEEEEESSCHHHHHHHHHCHHHHHHHSCCE------ESCCSTTCEEEESSS-------CEEECCEEET-TTEE
T ss_pred             CCCCceEEEEEEECCCHHHHHHHHcChHHHhhccCCC------ccCCCCCCEEEEEec-------CCEEEEEEcC-CcEE
Confidence            4456678899999999999999999988888887532      233344544223221       1245777887 7789


Q ss_pred             EEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          113 SFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       113 ~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      .|+...++.+  ....++.|.+.   ++   +|.+.......++     +.. ..+..-....|++|++.++.
T Consensus        83 ~~tw~~~~~~--~s~vt~~l~~~---~~---gT~Ltl~~~~~~~-----e~~-~~~~~GW~~~L~~L~~~L~G  141 (181)
T 4fpw_A           83 TISWVYEGKP--DSEVELRLSEE---GD---GTLLELEHATTSE-----QML-VEVGVGWEMALDFLGMFIRG  141 (181)
T ss_dssp             EEEEBCTTSC--CEEEEEEEEEE---TT---EEEEEEEEEESCH-----HHH-HHHHHHHHHHHHHHHHHC--
T ss_pred             EEEEEcCCCC--cEEEEEEEEEC---CC---cEEEEEEEEcCCH-----HHH-HHHHHhHHHHHHHHHHHhCC
Confidence            9998754433  45688899887   44   4888877655331     222 33444457888999988753

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.12  E-value=1.9e-05  Score=71.42  Aligned_cols=106  Identities=15%  Similarity=0.149  Sum_probs=84.7

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCC--CCCeEEEEEeecCCCCceeEEEE--EEEecCCceEEEE
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG--EVGSVRDVNIISGPPATTSTERL--EMLDDENHILSFR  115 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG--~vG~VR~~~~~~G~p~~~vkErL--~~iD~~~~~~~Y~  115 (192)
                      +.+..|++|++.||+.+.+.+++..|.|-...++++.+.|  .+|++- +.+..|  ..|. -++  +++|+ .++|...
T Consensus         4 ~~~~~i~~p~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~-~~~~~~--~~w~-~~~~~t~~~~-~~~F~d~   78 (516)
T 3oh8_A            4 TTSHFIPFPREMVWDWHTRKGAVARLTPPFIPLNPITQAERLADGTTI-FSLPAG--LKWV-ARHDLSGFLN-GSRFTDV   78 (516)
T ss_dssp             EEEEEESSCHHHHHHHHHSTTHHHHHSCTTSSCEECSCCSCSSSCEEE-EECSTT--CEEE-EEECGGGCBT-TTEEEEE
T ss_pred             EEEEEccCCHHHHHHHhcCcchHHHhCCCCCceEEecCCCCCcCCeEE-EecCCC--cEEE-EEEccccccC-CCeEEEE
Confidence            4578999999999999999999999998777888775443  688887 776533  3344 557  88887 7789999


Q ss_pred             EEeCCCC-cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053          116 VLGGDHR-LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP  156 (192)
Q Consensus       116 ileg~~p-~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~  156 (192)
                      ...|++. |..+.-+-.|.+.   ++   +|.+.....|..|
T Consensus        79 ~~~gp~~~~~~w~h~h~f~~~---~~---gt~~~d~~~~~~p  114 (516)
T 3oh8_A           79 CLTAPVKALANWRHVHNFVDQ---DG---GTLITDSVSTRLP  114 (516)
T ss_dssp             CCSCSSGGGSSCEEEEEEEEE---TT---EEEEEEEEECSSC
T ss_pred             eccCcccceeeeEEEEEEEEc---CC---CcEEEEEEEeeCc
Confidence            9998654 8888888889887   44   4999999999987

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=98.07  E-value=4.7e-05  Score=58.95  Aligned_cols=134  Identities=10%  Similarity=0.044  Sum_probs=77.2

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceE
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHIL  112 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~  112 (192)
                      +......+++.|+||+++||+++.|...+..|++ .........  |  |..+   +.+|    .+.=++.++++ ++++
T Consensus        16 ~~~~~i~~~r~~~ap~e~Vw~A~Tdpe~l~~W~~g~~~~~d~~~--G--G~~~---~~~G----~~~g~v~ev~p-~~rl   83 (158)
T 3ni8_A           16 FQGMSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAEVDLKV--G--GKFS---LFSG----SILGEFTEITK-PHKI   83 (158)
T ss_dssp             --CCCEEEEEEESSCHHHHHHHHHCHHHHHHHTTTSCCEECCST--T--CEEE---ETTT----TEEEEEEEEET-TTEE
T ss_pred             CCCceEEEEEEECCCHHHHHHHhcCHHHHHhhcCCCccEEEccC--C--CEEE---EecC----CEEEEEEEEeC-CcEE
Confidence            4455677889999999999999999888888886 322222222  2  4433   3334    23456778887 6678


Q ss_pred             EEEEEeCCCCc-ceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHH
Q 047053          113 SFRVLGGDHRL-QNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPEGNSDDDTRLFVGTVVKLN-LARLADLAM  184 (192)
Q Consensus       113 ~Y~ileg~~p~-~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~g~~~~~~~~~l~~~~~~~-L~~L~~~ae  184 (192)
                      .|+---.+.+- ..-..++.|.+.   ++|  +|.+....+ +...+....+........-.... |++|++.++
T Consensus        84 v~tw~~~~~~~~~~s~vt~~l~~~---~~~--~T~ltl~~~g~~~~~~~~~~~~~~~~~~GW~~~~L~~Lk~~Le  153 (158)
T 3ni8_A           84 VEKWKFRDWNECDYSTVTVEFISV---KEN--HTKLKLTHNNIPASNKYNEGGVLERCKNGWTQNFLHNIEVILG  153 (158)
T ss_dssp             EEEEEETTSCSSCCEEEEEEEEEE---ETT--EEEEEEEEECCCSSCTTCCCCHHHHHHHHHHHTHHHHHHHTSC
T ss_pred             EEEEEecCCCCCCcEEEEEEEEec---CCC--CEEEEEEEEccCchhhhccchhHHHHHhChhHHHHHHHHHHhC
Confidence            87654332211 235678888884   233  488777655 32222111111122233334553 788887765

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=98.07  E-value=6.7e-06  Score=61.99  Aligned_cols=129  Identities=6%  Similarity=-0.068  Sum_probs=79.2

Q ss_pred             CceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           35 NTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        35 ~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      ......+++.|+||+++||+++.|...+..|.+.........|    |.   +.+.+|.    +.=++.++++ ++++.|
T Consensus         9 ~~~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~~~~~~d~~~G----g~---~~~~~G~----~~g~v~e~~p-~~~l~~   76 (145)
T 1x53_A            9 PTCKITLKETFLTSPEELYRVFTTQELVQAFTHAPATLEADRG----GK---FHMVDGN----VSGEFTDLVP-EKHIVM   76 (145)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCBCCCSTT----CC---CBBTTTT----EECCEEEEET-TTEEEE
T ss_pred             cccEEEEEEEECCCHHHHHHHhCCHHHHHHhcCCCceEECCCC----CE---EEEECCe----eEEEEEEEeC-CCEEEE
Confidence            3456788899999999999999998888889754322222222    22   2333451    3345677887 778888


Q ss_pred             EEEeCCCCcc-eeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Q 047053          115 RVLGGDHRLQ-NYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKL-NLARLADLAMASF  187 (192)
Q Consensus       115 ~ileg~~p~~-~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~-~L~~L~~~ae~~~  187 (192)
                      +-...+.+-. ....++.+.+.   +++   |.+......-+.     ... ..+..-... .|++|++.++.-.
T Consensus        77 ~~~~~~~~~~~~~~v~~~l~~~---~~g---T~l~~~~~~~~~-----~~~-~~~~~Gw~~~~l~~L~~~le~g~  139 (145)
T 1x53_A           77 KWRFKSWPEGHFATITLTFIDK---NGE---TELCMEGRGIPA-----PEE-ERTRQGWQRYYFEGIKQTFGYGA  139 (145)
T ss_dssp             EEEETTSCTTCCEEEEEECCBC---SSC---EEEEEEEEEEEH-----HHH-HHHHHTTHHHHHHHHHHHTCCCC
T ss_pred             EEecCCCCCCCcEEEEEEEEEC---CCC---EEEEEEEECCCH-----HHH-HHHHhchhHHHHHHHHHHHhcCc
Confidence            8765433322 35677788776   343   777766332211     112 223334455 6889998887543

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=97.97  E-value=0.00017  Score=57.86  Aligned_cols=126  Identities=11%  Similarity=0.098  Sum_probs=82.2

Q ss_pred             CCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCce
Q 047053           32 PSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHI  111 (192)
Q Consensus        32 ~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~  111 (192)
                      +..+..+..++.++++|+++||+++.|...+..|++.+   +   +|-.+|..  +.|. +    ...-+++++++ +++
T Consensus        27 ~~~~~~~l~i~R~f~Ap~e~VW~AlTdpe~l~~W~~~~---~---~d~r~GG~--~~~~-~----~~~g~v~ev~p-p~r   92 (192)
T 2luz_A           27 PAGEARSIIIRQRYDAPVDEVWSACTDPNRINRWFIEP---K---GDLREGGN--FALQ-G----NASGDILRCEP-PRR   92 (192)
T ss_dssp             TTEEEEEEEEEEEESSCHHHHHHHHHCHHHHTTTSCCE---E---ECCSTTSE--EEET-T----SEEEEEEEEET-TTE
T ss_pred             cCCCceEEEEEEEeCCCHHHHHHHHcCHHHHheeeCCC---c---ccCccCcE--EEee-c----cccceEEEEec-Cee
Confidence            34456678899999999999999999988888887532   2   33334432  2232 1    12345778887 778


Q ss_pred             EEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          112 LSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       112 ~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      +.|+-...+.+  .-..++.|.+.   ++   +|.+...-+..+     ++....+ ..--...|++|+..++.
T Consensus        93 L~~tw~~~~~~--~~~vt~~L~~~---g~---gT~Ltl~h~~~~-----~~~~~~~-~~GW~~~Ld~L~~~L~g  152 (192)
T 2luz_A           93 LTISWVYEGKP--DSEVELRLSEE---GD---GTLLELEHATTS-----EQMLVEV-GVGWEMALDFLGMFIRG  152 (192)
T ss_dssp             EEEEEEESSSC--EEEEEEEEEEE---TT---EEEEEEEEEESC-----HHHHHHH-HHHHHHHHHHHHHHHTT
T ss_pred             EEEEEeecCCC--CceEEEEEEEc---CC---cEEEEEEEECCC-----HHHHHHH-hccHHHHHHHHHHHhCC
Confidence            99887554332  34568888887   44   477765554332     2333333 33457889999998874

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=97.76  E-value=0.0041  Score=48.47  Aligned_cols=140  Identities=7%  Similarity=-0.116  Sum_probs=90.1

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCC---CceeEEEEEEEecCCceEEEEE
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPP---ATTSTERLEMLDDENHILSFRV  116 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p---~~~vkErL~~iD~~~~~~~Y~i  116 (192)
                      -.+..|++|++++|+++.|....+.|.|.+.++++++-+++ -.+-.+.+.-..|   ...+--+-...+.++ .+....
T Consensus        30 k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~~~~-~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g-~~~i~~  107 (189)
T 3qsz_A           30 RGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKATDT-EQYHYLDNSAPWPVSNRDGVYHFTYEKAGDG-AITVRV  107 (189)
T ss_dssp             EEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEECSS-EEEEEEEECCSSSCCCEEEEEEEEEEECTTS-CEEEEE
T ss_pred             EEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEeecCC-ceEEEEEeecCCCcCCcceEEEEEEEECCCC-eEEEEE
Confidence            34578899999999999999999999999999988764321 2233334432212   233333333334333 443333


Q ss_pred             EeCC--CC-------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          117 LGGD--HR-------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       117 leg~--~p-------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      ...+  .|       ...+.+.+.+.|.   ++   .|.+.+....++.-......+..++...+-..|++|++.+++.+
T Consensus       108 ~~~~~~~P~~~~~VR~~~~~~~~~i~p~---~~---~t~vt~~~~~dp~G~iP~~lvn~~~~~~~~~~l~~L~k~~~~~~  181 (189)
T 3qsz_A          108 EAVPDYLPLRKGKVRIPRAKGQWTLVPD---AD---GVDVTYQMHASPGGSIPSWLANQTVVETPFGTLKALRSHLRQAH  181 (189)
T ss_dssp             EECTTSSCCCTTSEECCCEEEEEEEEEC---SS---SEEEEEEEEECSCSSSCHHHHHHTTTHHHHHHHHHHHHHHTC--
T ss_pred             EcCCCccCCCCCeEEeeEeeEEEEEEEC---CC---eEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence            3322  11       5678899999883   23   39999999999754445555555666677788899999887653

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=97.48  E-value=0.0046  Score=48.97  Aligned_cols=142  Identities=11%  Similarity=0.016  Sum_probs=91.3

Q ss_pred             EEEEEE-cCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCC---ceeEEE-EEEEecCCceEE-
Q 047053           40 LITQKI-NTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPA---TTSTER-LEMLDDENHILS-  113 (192)
Q Consensus        40 ~v~~~I-~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~---~~vkEr-L~~iD~~~~~~~-  113 (192)
                      -.+.+| ++|+++|++++.|......|-+.+.++++++-+|  ..+..+.+....|.   ..+-.+ ...++++...+. 
T Consensus        55 k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~~~--~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~~~~  132 (214)
T 1ln1_A           55 KVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNG--ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHV  132 (214)
T ss_dssp             EEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETT--EEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEE
T ss_pred             EEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEeccCC--CEEEEEEEEcCCCCCCceEEEEEEEEecccCCCeEEE
Confidence            345788 5999999999999877889999999988876554  45555665532232   233333 223444433222 


Q ss_pred             --EEEEeCC-CC-------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          114 --FRVLGGD-HR-------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA  183 (192)
Q Consensus       114 --Y~ileg~-~p-------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~a  183 (192)
                        ..-++.+ .|       ...|.+.+.+.|.   +++  +|.+.+....++.-..+...+..++.......|++|++++
T Consensus       133 i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~---~~~--~t~v~~~~~~Dp~G~iP~~l~n~~~~~~~~~~l~~l~k~~  207 (214)
T 1ln1_A          133 ILARSTSMPQLGERSGVIRVKQYKQSLAIESD---GKK--GSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARAC  207 (214)
T ss_dssp             EEEEECCBTTBCCCTTSEEECCEEEEEEEEEC---SSS--SEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             EEEecccCCCCCCCCCcEEEEEEEEEEEEecC---CCC--ceEEEEEEEECCCCcccHHHHHHHHHHHhHHHHHHHHHHH
Confidence              2222221 12       4568888889997   343  4999999999975334445555566777788889999988


Q ss_pred             Hhccc
Q 047053          184 MASFK  188 (192)
Q Consensus       184 e~~~~  188 (192)
                      ++..+
T Consensus       208 ~~y~~  212 (214)
T 1ln1_A          208 QNYLK  212 (214)
T ss_dssp             HTC--
T ss_pred             Hhccc
Confidence            76543

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.98  E-value=0.027  Score=42.66  Aligned_cols=125  Identities=9%  Similarity=0.013  Sum_probs=76.9

Q ss_pred             eeEEEEEEEcCCh-hhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053           37 CTSLITQKINTPL-SFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        37 ~~~~v~~~I~apa-~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      -+...+..|+||+ ++||++|+...++..|...  .+. ..|.     .-.+...+  + ..-.=+++++++ +++++|+
T Consensus         4 ~~i~~e~~i~A~~~~~VW~~IStPegL~~Wfad--~v~-~~g~-----~~~F~w~~--~-~~~~~~v~~~~~-~~~i~Fr   71 (136)
T 2lio_A            4 EKIHLEYLLNATSKNILWSAISTPTGLEDWFAD--KVV-SDDK-----TVTFCWGK--T-EQRQAGIVAIRA-YSFIRFH   71 (136)
T ss_dssp             EEEEEEEEECTTSCTHHHHGGGSHHHHTTTSSS--EEE-EETT-----EEEEESSS--S-SEEEEEEEEEET-TTEEEEE
T ss_pred             CcEEEEEEecCChHHHHHHHhCChhhhhcccCC--CCc-ccCc-----eEEEEeCC--C-CcEeEEEEEEcC-CCEEEEE
Confidence            3556788999999 9999999999999999864  222 2232     22233332  2 233556778887 7789999


Q ss_pred             EEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          116 VLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       116 ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      =.+.  +..++.-+|++...  +..+  ++.+.-+ .|..+     ..... +...-...|++|++.++.+
T Consensus        72 W~~~--~~~~~~~e~~l~~~--~~t~--~~~L~vt-dFa~~-----~~~e~-~~~gW~~~l~~Lk~~lg~~  129 (136)
T 2lio_A           72 WLDD--ENERDYFEIKMSYN--ELTG--DYVLEIT-DFSEA-----DEADD-LKELWDSQVSKLRRTCGFL  129 (136)
T ss_dssp             ESSS--SSSSCEEEEEEEEC--TTTS--CEEEEEE-EEECH-----HHHHH-HHHHHHHHHHHHHHHTSCC
T ss_pred             ccCC--CCCceEEEEEEEec--CCCC--cEEEEEe-cCCCc-----cchhH-HHhhHHHHHHHHHHHhhhh
Confidence            8753  23456777787765  1111  2444333 34321     12333 4555667778898887765

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=96.54  E-value=0.024  Score=44.21  Aligned_cols=128  Identities=9%  Similarity=0.020  Sum_probs=73.9

Q ss_pred             CChhhHhhhhc-CCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEeC-CCCcc
Q 047053           47 TPLSFVWPFVR-DFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLGG-DHRLQ  124 (192)
Q Consensus        47 apa~~VW~~v~-df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ileg-~~p~~  124 (192)
                      -..++||.-+. ...++..+.|.+.+|++++-.+ -.-+|.++|+.    ..++|+++ +.+ ..++.|.+-.. ..+=.
T Consensus        20 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vlse~~-~~~~R~l~fg~----~~i~e~vt-l~~-~~~v~f~~~~t~~~~gs   92 (157)
T 2ffs_A           20 LDRLQLWEGLVCRAREPQYFVVGLERFEILVDDG-DRLHRRLYLPG----LVVEDEVV-LKA-PDSAHYSIKPSAEVAGG   92 (157)
T ss_dssp             CCHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECS-SEEEEEEEETT----EEEEEEEE-EET-TTEEEEEECCCSSSBEE
T ss_pred             cCHHHHHHHHHHHhcChhhcccccCeEEEEecCC-CeEEEEEEECC----CccceEEE-EcC-CcEEEEEcccccCCCCc
Confidence            35688999864 5677999999999999975432 27789999974    37789887 444 66799999772 22223


Q ss_pred             eeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047053          125 NYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG-NSDDDTRLFVGTVVKLNLARLADLAMASFK  188 (192)
Q Consensus       125 ~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g-~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~  188 (192)
                      ....+|.- |.    +|.  =.+...++...|.. ..++....++...|+.+...--++...+++
T Consensus        93 ~ltn~Iee-~~----~g~--L~lrF~ye~~~p~~s~e~~~~~~~~~~ay~~ad~~Tv~~iRel~~  150 (157)
T 2ffs_A           93 SLDMTIEE-PE----PGS--LFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIRDRFG  150 (157)
T ss_dssp             EEEEEEEE-EE----TTE--EEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEEee-CC----CCc--EEEEEEEEccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333 22    331  22222333223321 112234455666776555444444444433

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=96.11  E-value=0.33  Score=38.76  Aligned_cols=141  Identities=7%  Similarity=-0.077  Sum_probs=80.3

Q ss_pred             EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecC-----CCCceeEEEEEEEecCCceEEE
Q 047053           41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISG-----PPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G-----~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      ++.+|++|+++|++++.|...-..|-+.+..+++++- ++.. .|-...+...     .|...+--|-...+++...+..
T Consensus        71 ~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~id~~~-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~  149 (224)
T 1jss_A           71 AQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENC-CVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCG  149 (224)
T ss_dssp             EEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTE-EEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHhCcccccccccceeeEEEEEEcCCCe-EEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEE
Confidence            3467899999999999987667899999999988764 3211 2222223221     1223444443333343433322


Q ss_pred             EEEeCCC------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          115 RVLGGDH------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       115 ~ileg~~------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      .-++.+.      ....+.+-+.+.|.   .++...|.+.|....++---.+...+..++-...-.-+++|++.+++
T Consensus       150 ~Sv~hp~~~~g~VR~~~~~~g~~i~p~---~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~  223 (224)
T 1jss_A          150 VSVEWSETRPEFVRGYNHPCGWFCVPL---KDSPSQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKGLRK  223 (224)
T ss_dssp             EECCCCCCCTTSEECEECSEEEEEEEE---TTEEEEEEEEEEECEECCSCCCHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             eeeecCCCCCCCEEEEecccEEEEEEc---CCCCCceEEEEEEEeCCCCCccHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            2233221      22455677888887   23223599999998886322344444445445555666677766543

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=96.00  E-value=0.27  Score=39.03  Aligned_cols=140  Identities=4%  Similarity=-0.043  Sum_probs=80.0

Q ss_pred             EEEEEcCChhhHhhhh-cCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec--CCC---CceeEEEEEEEecCCceEE
Q 047053           41 ITQKINTPLSFVWPFV-RDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS--GPP---ATTSTERLEMLDDENHILS  113 (192)
Q Consensus        41 v~~~I~apa~~VW~~v-~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~--G~p---~~~vkErL~~iD~~~~~~~  113 (192)
                      ++..|++|+++||+++ .|...-..|-+.+.++++++- ++.. .|-......  ..|   ...+--|....++....+.
T Consensus        59 ~~~~v~~~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~~~~t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~  137 (221)
T 3p0l_A           59 LEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDT-FITHELAAEAAGNLVGPRDFVSVRCAKRRGSTCVLA  137 (221)
T ss_dssp             EEEEESSCHHHHHHHHTTTGGGTTTSCTTCSEEEEEEECSSSE-EEEEEEECC---CCSCCEEEEEEEEEEECSSCEEEC
T ss_pred             EEEEEcCCHHHHHHHHHhccchhhhcCcchheEEEEEecCCCe-EEEEEeeccccCCccCCceEEEEEEEEEcCCeEEEE
Confidence            3467799999999997 688888999999999988754 3211 122222221  122   2333333333333332222


Q ss_pred             EEEEeCC-CC-------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          114 FRVLGGD-HR-------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       114 Y~ileg~-~p-------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      ..-++.+ .|       ...+.+-+.+.|.   ++|...|.+.|....++---.+...+..++....-.-+++|++.++
T Consensus       138 ~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~---~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~  213 (221)
T 3p0l_A          138 GMATDFGNMPEQKGVIRAEHGPTCMVLHPL---AGSPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRKRLE  213 (221)
T ss_dssp             CEECCCTTSCCCTTSEECEECSCEEEEEEE---TTEEEEEEEEEEECEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEeccCCCCCCCCCeEEEeccceEEEEEEC---CCCCCcEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2223322 12       1345567778887   3332259999998888643344444445544445557778887776

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=95.84  E-value=0.29  Score=39.07  Aligned_cols=143  Identities=8%  Similarity=-0.063  Sum_probs=83.8

Q ss_pred             EEEEEcCChhhHh-hhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec--CCC---CceeEEEEEEEecCCceEE
Q 047053           41 ITQKINTPLSFVW-PFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS--GPP---ATTSTERLEMLDDENHILS  113 (192)
Q Consensus        41 v~~~I~apa~~VW-~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~--G~p---~~~vkErL~~iD~~~~~~~  113 (192)
                      +...+++|++.|+ .++.|......|-+.+..+++++- ++.. .|-......  +.|   ...+--|-...++....+.
T Consensus        70 ~~~~v~~~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~~~~t-~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~  148 (229)
T 1em2_A           70 LKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNT-LISYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSS  148 (229)
T ss_dssp             EEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTE-EEEEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEE
T ss_pred             EEEEecCCHHHHHHHHHhCccchhhcccccceEEEEEecCCCe-EEEEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEE
Confidence            4467799999999 788888888999999999888754 3211 122222221  223   2344434333443333333


Q ss_pred             EEEEeCC-CC-------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          114 FRVLGGD-HR-------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       114 Y~ileg~-~p-------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      ..=++.+ .|       ...+.+-+.+.|.. ++.+  .|.+.|....++---.+......++...+-.-+++|++.+++
T Consensus       149 ~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~-~~~~--~t~vt~~~~~Dp~G~iP~~l~n~~~~~~~~~~~~~Lr~~~~~  225 (229)
T 1em2_A          149 GIATSHSAKPPTHKYVRGENGPGGMIVLKSA-SNPR--VCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISE  225 (229)
T ss_dssp             EEECCCTTSCCCTTSEECEECSEEEEEEECS-SCTT--CEEEEEEECEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCCCCCCCCEeeeecccEEEEEecC-CCCC--cEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3233332 12       23455677888861 1123  499999888885322444445555666666778888888876


Q ss_pred             cc
Q 047053          186 SF  187 (192)
Q Consensus       186 ~~  187 (192)
                      +.
T Consensus       226 ~~  227 (229)
T 1em2_A          226 LG  227 (229)
T ss_dssp             TT
T ss_pred             hc
Confidence            54

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=93.95  E-value=1.1  Score=36.29  Aligned_cols=142  Identities=12%  Similarity=0.014  Sum_probs=79.4

Q ss_pred             EcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCCCC---ceeEEEEEEEe----cCC--c--eE
Q 047053           45 INTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGPPA---TTSTERLEMLD----DEN--H--IL  112 (192)
Q Consensus        45 I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~p~---~~vkErL~~iD----~~~--~--~~  112 (192)
                      .+++++.|++++.|+.....|-+.+..+++++- ++ -+.|-.+.++...|.   ..+--|-...+    +..  .  .+
T Consensus        82 ~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~i~~-~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~  160 (255)
T 2e3n_A           82 KGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLAD-NAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVC  160 (255)
T ss_dssp             ETCCHHHHHHHHHCGGGHHHHCCSEEEEEEEEEEET-TEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEE
T ss_pred             cCCCHHHHHHHHhCcchHhhhhhhcceeEEEEEcCC-CCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEE
Confidence            359999999999999888999999999988764 32 134656655432332   33333322222    111  1  12


Q ss_pred             EEEEEeCCCCc-ce-eEEE--------EEEEeeecCCC-----CeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q 047053          113 SFRVLGGDHRL-QN-YRSV--------TSVNDFISEET-----GEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLA  177 (192)
Q Consensus       113 ~Y~ileg~~p~-~~-y~at--------i~v~p~~~~~~-----g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~  177 (192)
                      .+++.....|- +. -++.        .-+.|.  .++     +..+|.+.+....++--.........++...+-..|+
T Consensus       161 ~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~--~g~~~l~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~l~  238 (255)
T 2e3n_A          161 NFSVDHDSAPLNNRCVRAKINVAMICQTLVSPP--EGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLK  238 (255)
T ss_dssp             EEECCCTTSCCCSSSEECEEEEEEEEEEEEC-----CCCCCCGGGEEEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCCCCCCCCCCEEEEEEeeeeeeeEeccC--CCCcccccCCCcEEEEEEEEeCCCCccCHHHHHHHHhccccHHHH
Confidence            33332221222 22 2222        122232  011     0136999999988864334444445555666777888


Q ss_pred             HHHHHHHhcccc
Q 047053          178 RLADLAMASFKS  189 (192)
Q Consensus       178 ~L~~~ae~~~~~  189 (192)
                      +|++..+...++
T Consensus       239 ~L~k~v~~~~~~  250 (255)
T 2e3n_A          239 RFTSYVQEKTAG  250 (255)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHhccC
Confidence            999888766554

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=93.61  E-value=2.2  Score=33.80  Aligned_cols=141  Identities=9%  Similarity=-0.070  Sum_probs=79.0

Q ss_pred             EEEEEcCChhhHhhhh--cCCCCCCccCcccceeEeecC-CCCCCeE-EEEEeec-CCC---CceeEEEEEEEecCC-ce
Q 047053           41 ITQKINTPLSFVWPFV--RDFTNPDKYKNFIRSCTMKVG-AGEVGSV-RDVNIIS-GPP---ATTSTERLEMLDDEN-HI  111 (192)
Q Consensus        41 v~~~I~apa~~VW~~v--~df~~~~~w~p~v~s~~~~eG-dG~vG~V-R~~~~~~-G~p---~~~vkErL~~iD~~~-~~  111 (192)
                      .+.+|++|+++|++++  .|...-..|-+.+..+++++- ++ -..| +.+...- +.|   ...+.-|-...++++ ..
T Consensus        71 ~~~~v~~~~~~v~~~l~~~d~~~r~~Wd~~~~~~~vle~i~~-~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~v  149 (231)
T 2r55_A           71 GEGIVYGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITD-TLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTIS  149 (231)
T ss_dssp             EEEEESSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEECSS-SEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEE
T ss_pred             EEEEECCCHHHHHHHHHhhCcchhhhhccccceeEEEEEcCC-CEEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEE
Confidence            3467799999999999  788888899998888887654 32 1222 2221111 112   234444443443333 22


Q ss_pred             EEEEEEeCC-C-Ccc------eeEEEEEEEeeecCC-CCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047053          112 LSFRVLGGD-H-RLQ------NYRSVTSVNDFISEE-TGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL  182 (192)
Q Consensus       112 ~~Y~ileg~-~-p~~------~y~ati~v~p~~~~~-~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~  182 (192)
                      +...=++.+ . +.+      .+.+-+.+.|.  ++ .+  .|.+.|....++.--.....+..++...+-..+++|++.
T Consensus       150 i~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~--~~~~~--~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~  225 (231)
T 2r55_A          150 SNATHVEHPLCPPKPGFVRGFNHPCGCFCEPL--PGEPT--KTNLVTFFHTDLSGYLPQNVVDSFFPRSMTRFYANLQKA  225 (231)
T ss_dssp             EEEEECCCTTSCCCTTCEEEEECSEEEEEEEC--C--CC--CEEEEEEECEECCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCCCCCCCCEEEEEEeeEEEEEEe--CCCCC--cEEEEEEEEeCCCCCccHHHHHHHHhHhHHHHHHHHHHH
Confidence            223323332 2 222      33455667776  21 23  499999988886433444444455555566777888887


Q ss_pred             HHhc
Q 047053          183 AMAS  186 (192)
Q Consensus       183 ae~~  186 (192)
                      +++.
T Consensus       226 ~~~~  229 (231)
T 2r55_A          226 VKQF  229 (231)
T ss_dssp             HHGG
T ss_pred             HHHh
Confidence            7654

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=90.76  E-value=5  Score=32.28  Aligned_cols=138  Identities=12%  Similarity=0.069  Sum_probs=80.6

Q ss_pred             EEEEEcCChhhHhh-hhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCCC---CceeEEEEEE--EecCCceEE
Q 047053           41 ITQKINTPLSFVWP-FVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGPP---ATTSTERLEM--LDDENHILS  113 (192)
Q Consensus        41 v~~~I~apa~~VW~-~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~p---~~~vkErL~~--iD~~~~~~~  113 (192)
                      ++.+|++++++++. ++.|   -..|-+.+..+++++- ++. -.|-...+....|   ...+.-|-..  +++....+.
T Consensus        79 ~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~~~~vle~id~~-~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~  154 (237)
T 2pso_A           79 ASVEVEAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQ-TEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLV  154 (237)
T ss_dssp             EEEEESSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETT-EEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEE
T ss_pred             EEEEEcCChHHHHHHHHhh---hhhHHhhhceEEEEEEcCCC-cEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEE
Confidence            35788999988875 5677   6789998888888754 321 1233344432222   2344444332  234445555


Q ss_pred             EEEEeCC-CC------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          114 FRVLGGD-HR------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       114 Y~ileg~-~p------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      ..-++.+ .|      ...+.+.+-+.|.   +.+  .|.+.|....++. |.....+..++....-..|.+|++.++.+
T Consensus       155 ~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~---~~~--~t~vt~~~~~Dp~-G~iP~~ln~~~~~~~~~~l~~LR~~~~~~  228 (237)
T 2pso_A          155 SLSVEHEEAQLLGGVRAVVMDSQYLIEPC---GSG--KSRLTHICRIDLK-GHSPEWYSKGFGHLCAAEVARIRNSFQPL  228 (237)
T ss_dssp             EEECCCTTCCCCSSEECCEEEEEEEEEEC---STT--CEEEEEEEEECCS-SSCTTTTTTHHHHHHHHHHHHHHHTTSCC
T ss_pred             EEcccCCCCCCCCcEEEEEeccEEEEEEC---CCC--CEEEEEEEEeCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5555543 22      2456677888887   344  4999999988864 44333233333444445688888888776


Q ss_pred             cc
Q 047053          187 FK  188 (192)
Q Consensus       187 ~~  188 (192)
                      .+
T Consensus       229 ~~  230 (237)
T 2pso_A          229 IA  230 (237)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=90.08  E-value=7  Score=32.15  Aligned_cols=110  Identities=10%  Similarity=0.055  Sum_probs=65.8

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeec-CC---CCceeEEEEEEE-ecCC--ce
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIIS-GP---PATTSTERLEML-DDEN--HI  111 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~-G~---p~~~vkErL~~i-D~~~--~~  111 (192)
                      -++.+|++|++.||+++.|....+.|-+.+.++++++- ++. -.|-.+.... +.   |...+.-|-..- +...  ..
T Consensus        91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~-~ivY~~~~p~~~~~v~~RDFV~lr~~r~~~~~G~~yv  169 (258)
T 3fo5_A           91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDED-DAIYHVTSPALGGHTKPQDFVILASRRKPCDNGDPYV  169 (258)
T ss_dssp             EEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETT-EEEEEEEECCCTTCSSCEEEEEEEEEECCSSTTCCEE
T ss_pred             EEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCC-eEEEEEecCCccCCCCCCEEEEEEEEEeccCCCCEEE
Confidence            35567999999999999998889999999999988753 321 1122232221 11   223444443321 2222  33


Q ss_pred             EEEEEEeCC-C-Cc------ceeEEEEEEEeeecCCCCeeEEEEEEEEEecC
Q 047053          112 LSFRVLGGD-H-RL------QNYRSVTSVNDFISEETGEVYCVVLESYVVDI  155 (192)
Q Consensus       112 ~~Y~ileg~-~-p~------~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~  155 (192)
                      +...-++.+ . |-      ..+.+-+-+.|.   +++  .|.|.+....+|
T Consensus       170 i~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~---~~~--~t~VtY~~q~dp  216 (258)
T 3fo5_A          170 IALRSVTLPTHRETPEYRRGETLCSGFCLWRE---GDQ--LTKVSYYNQATP  216 (258)
T ss_dssp             EEEEEEECTTSCCCTTSEECCCSSEEEEEEEE---ETT--EEEEEEEESCCG
T ss_pred             EEEEeccCCCCCCCCCCEEEEEcCcEEEEEEC---CCC--CEEEEEEEeeCC
Confidence            443334432 2 22      466688899998   344  488888766664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	6e-19
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	9e-19
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	3e-18
d3cnwa1	138	d.129.3.8 (A:3-140) Uncharacterized protein XoxI {	1e-16
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	2e-15
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	3e-12
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	8e-12
d1vjha_	120	d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha	2e-05

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score = 77.2 bits (190), Expect = 6e-19
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 48  PLSFVWPFVRDFTN--PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEML 105
                  F+ D     P      I S     G G  G+++ +N   G P     +R++ +
Sbjct: 15  AARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEV 74

Query: 106 DDENHILSFRVLGGDHRLQNYRSVTSVNDFI-SEETGEVYCVVLESYVVDIPEGNSDD 162
           D  N   ++ V+ G         +++    + + + G V  +  + +     E  ++ 
Sbjct: 75  DHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQ 132

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score = 76.8 bits (189), Expect = 9e-19
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 6/138 (4%)

Query: 42  TQKINTPLS---FVWPFVRDFTN--PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPAT 96
             ++ + +S       FV D     P       +S  +K G G  G+++ + +  G P T
Sbjct: 6   VLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEIK-GDGGPGTLKIITLPDGGPIT 64

Query: 97  TSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP 156
           T T R++ ++ E     + V+ GD  L    S+ +    +    G   C     +     
Sbjct: 65  TMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGD 124

Query: 157 EGNSDDDTRLFVGTVVKL 174
               +++ +        L
Sbjct: 125 AVVPEENIKYANEQNTAL 142

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score = 75.7 bits (186), Expect = 3e-18
 Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 3/115 (2%)

Query: 51  FVWPFVRDFTN--PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDE 108
               FV D  N  P      I+   +  G G  G+++ +    G        +++ +D E
Sbjct: 18  LFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKE 77

Query: 109 NHILSFRVLGGDHRLQNYRSVTSVNDFI-SEETGEVYCVVLESYVVDIPEGNSDD 162
           N+  S+ ++ GD        ++     + S   G +       +     E   + 
Sbjct: 78  NYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEH 132

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

 Score = 70.6 bits (172), Expect = 1e-16
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 12/143 (8%)

Query: 38  TSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATT 97
            +  + +I      VW  +  F +   +  +I S  +  G         V  ++ P   T
Sbjct: 3   HTTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEG-------GRVRHLANPDGDT 55

Query: 98  STERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE 157
             ERLE+ +D+    ++ ++     + NY S   V     +E  E    ++E      P 
Sbjct: 56  IIERLEVFNDKERYYTYSIMNAPFPVTNYLSTIQV-----KEGTESNTSLVEWSGTFTPV 110

Query: 158 GNSDDDTRLFVGTVVKLNLARLA 180
             SD++       +    L  L 
Sbjct: 111 EVSDEEAINLFHGIYSDGLKALQ 133

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 68.0 bits (166), Expect = 2e-15
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 5/126 (3%)

Query: 42  TQKINTPLS---FVWPFVRDFTN-PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATT 97
             +  + ++        V+D      K    I+S     G G  G+++ + +I G     
Sbjct: 6   EDESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEGGETKY 65

Query: 98  STERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFI-SEETGEVYCVVLESYVVDIP 156
              ++E +D+ N   ++ ++GG         ++     +     G +  V ++       
Sbjct: 66  VLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDA 125

Query: 157 EGNSDD 162
           + N ++
Sbjct: 126 QPNEEE 131

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score = 59.2 bits (143), Expect = 3e-12
 Identities = 13/100 (13%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 42  TQKINTPLS---FVWPFVRDFTN-PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATT 97
             + ++ ++         +D      K    I+S  +  G G VG+++ +    G   + 
Sbjct: 6   RDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSF 65

Query: 98  STERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFIS 137
             ++++ +D+ N    + ++GG    ++   ++     ++
Sbjct: 66  VLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVA 105

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 58.4 bits (141), Expect = 8e-12
 Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 51  FVWPFVRDFTN-PDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDEN 109
                 +D      K    I+S  +  G G  G+++ +  I     +    +L+ +D+ N
Sbjct: 18  LYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEAN 77

Query: 110 HILSFRVLGGDHRLQNYRSVTSVNDFIS 137
              ++ ++GG+   ++   ++  +  + 
Sbjct: 78  LTYNYSIIGGEGLDESLEKISYESKILP 105

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 6/56 (10%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 87  VNIISGPPATTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGE 142
           V   + P        +E +D     ++ ++ G +   + ++++           G+
Sbjct: 25  VEDTNRPFEKNGKTEIEAVDLVKKTMTIQMSGSE-IQKYFKTLKGSIAVTPIGVGD 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.96
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	99.93
d1fm4a_	159	Major tree pollen allergen {European white birch (	99.93
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	99.92
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	99.92
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	99.92
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	99.91
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.64
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.6
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.58
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.54
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.35
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	99.26
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	99.2
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	99.04
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	98.76
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.67
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.52
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.51
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	98.24
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.22
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	98.21
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	98.12
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	98.11
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	97.72
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	97.54
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	96.97
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	96.84
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	96.35
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	95.96
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	87.94

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.96  E-value=1.4e-27  Score=180.89  Aligned_cols=136  Identities=20%  Similarity=0.276  Sum_probs=121.0

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRV  116 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~i  116 (192)
                      -+.+.+++|+|||++||++++||++++.|+|.+.+|+..+    .|++|.|++.+|   ..+.|||+.+|+.+|+++|++
T Consensus         2 ~~~~~si~I~A~pe~VW~~v~df~~~~~W~p~v~~~~~~~----~G~~R~~~~~~g---~~~~E~l~~~d~~~~~~~y~~   74 (138)
T d3cnwa1           2 AHTTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTE----GGRVRHLANPDG---DTIIERLEVFNDKERYYTYSI   74 (138)
T ss_dssp             EEEEEEEEESSCHHHHHHHHCCTTCGGGTCTTCSEEEEEG----GGTEEEEECTTC---CEEEEEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEEEeCCHHHHHHHHhCccchHHHhcccceeEeec----CceeEEEEecCC---ceeEEEEEEEeCCCcEEEEEE
Confidence            3567889999999999999999999999999999998763    389999999877   689999999999999999999


Q ss_pred             EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          117 LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       117 leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      ++|++|+++|.++++|.|.  +++|  +|.|.|+..|++ .+...+.+..+++++|+.+|++|+++..
T Consensus        75 ~~~~~p~~~~~~~~~l~p~--~~g~--~t~v~w~~~f~p-~~~~~~~~~~~~~~~~~~~l~~L~~~f~  137 (138)
T d3cnwa1          75 MNAPFPVTNYLSTIQVKEG--TESN--TSLVEWSGTFTP-VEVSDEEAINLFHGIYSDGLKALQQAFL  137 (138)
T ss_dssp             EECSSSEEEEEEEEEEEEC--SSTT--CEEEEEEEEEEE-SSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcceeeEEEEEEEEC--CCCC--eEEEEEEEEEec-CCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999998  3333  499999999996 4566777888999999999999998764

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=99.93  E-value=1.3e-25  Score=173.93  Aligned_cols=114  Identities=14%  Similarity=0.184  Sum_probs=99.9

Q ss_pred             eeEEEEEEEcCChhhHhhh-hcCCCCCCccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           37 CTSLITQKINTPLSFVWPF-VRDFTNPDKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~-v~df~~~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      .+.+.++++++||+++|.+ +.||+++..|+| .|++|++++|||++|+||.|+|.+|.|..+++|||+++|+++|+|+|
T Consensus         3 ~~~~~E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~~~~kErl~~iD~~~~~~~y   82 (147)
T d1txca1           3 FVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLGYDY   82 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEEE
T ss_pred             eEEEEEEeccCCHHHHHHhhhcccccCccccccccccceeecCCCCcceEEEEEEcCCCcceEEEEEEEEEccCCcEEEE
Confidence            3567788999999999974 679999755555 79999999999999999999999887767999999999999999999


Q ss_pred             EEEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecC
Q 047053          115 RVLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDI  155 (192)
Q Consensus       115 ~ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~  155 (192)
                      ++++|++   +|++|..++++.|.   ++|  +|.+.|+++|.+
T Consensus        83 ~iiEGd~l~~~~~s~~~~~~~~~~---~~g--gs~vkw~~~y~~  121 (147)
T d1txca1          83 SIVGGTGLPESLEKLSFETKVVAG---SGG--GSISKVTLKFHT  121 (147)
T ss_dssp             EEEESTTSCTTEEEEEEEEEEEEC---STT--CEEEEEEEEEEE
T ss_pred             EEEccCccccceEEEEEEEEEecC---CCC--CcEEEEEEEEEE
Confidence            9999984   78999999999998   344  499999999875

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=99.93  E-value=3.4e-25  Score=173.62  Aligned_cols=115  Identities=18%  Similarity=0.226  Sum_probs=101.5

Q ss_pred             eeEEEEEEEcCChhhHhhh-hcCCCC-CCccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEE
Q 047053           37 CTSLITQKINTPLSFVWPF-VRDFTN-PDKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~-v~df~~-~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      .+.+.++++++||+++|++ +.|+++ +++|.| .+++|++++|+|++|+||.|+|..|.|..++||||+++|+++|+++
T Consensus         3 ~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~~~   82 (159)
T d1fm4a_           3 FNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYN   82 (159)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSSSEEEEEEEEEETTTTEEE
T ss_pred             eEEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCCCCceEEEEEEEEEcccccEEE
Confidence            3556788899999999998 579888 477776 7999999999999999999999888777899999999999999999


Q ss_pred             EEEEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053          114 FRVLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP  156 (192)
Q Consensus       114 Y~ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~  156 (192)
                      |++++|+.   .|++|+++++|.|.   ++|  +|.+.|+.+|++.
T Consensus        83 y~viEGd~l~~~~~s~~~~~k~~~~---~~g--g~v~kwt~eYe~~  123 (159)
T d1fm4a_          83 YSVIEGGPVGDTLEKISNEIKIVAT---PDG--GCVLKISNKYHTK  123 (159)
T ss_dssp             EEEEEBTTBTTTEEEEEEEEEEEEC---TTS--CEEEEEEEEEEES
T ss_pred             EEEEeccccccceEEEEEEEEEecC---CCC--ceEEEEEEEEEEC
Confidence            99999984   79999999999998   444  4999999999753

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=99.92  E-value=7.7e-25  Score=171.63  Aligned_cols=116  Identities=17%  Similarity=0.217  Sum_probs=101.8

Q ss_pred             eEEEEEEEcCChhhHhhh-hcCCCCC-CccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           38 TSLITQKINTPLSFVWPF-VRDFTNP-DKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~-v~df~~~-~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      +-++++++++||+++|++ ++|++++ +++.| .++++++++|||++||||.|+|..|.|..++||||+++|+++|+++|
T Consensus         4 ~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~KErie~iD~~~~~~~y   83 (159)
T d1e09a_           4 TYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSY   83 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCCCCcEEEEEEEEEEcccccEEEE
Confidence            456788999999999998 4799884 67766 69999999999999999999999888878999999999999999999


Q ss_pred             EEEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC
Q 047053          115 RVLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG  158 (192)
Q Consensus       115 ~ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g  158 (192)
                      ++++|++   .|++|..++++.+.   ++|  +|.+.|+.+|++..+
T Consensus        84 ~viEGd~l~~~~~s~~~~~~~~~~---~~~--g~vvkwt~eYe~~~~  125 (159)
T d1e09a_          84 TLIEGDALGDTLEKISYETKLVAS---PSG--GSIIKSTSHYHTKGN  125 (159)
T ss_dssp             EECCCTTTGGGEEEEEEEEEECCC---TTS--SEEEEEEEEEEECSS
T ss_pred             EEEecccccccEEEEEEEEEEccC---CCC--CcEEEEEEEEEECCC
Confidence            9999986   68899999999987   343  499999999986443

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.92  E-value=8.8e-25  Score=171.00  Aligned_cols=116  Identities=15%  Similarity=0.195  Sum_probs=103.1

Q ss_pred             eEEEEEEEcCChhhHhhhh-cCCCCC-CccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053           38 TSLITQKINTPLSFVWPFV-RDFTNP-DKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v-~df~~~-~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      +.+.+.++++||+++|.++ .|++++ +++++.|++|++++|||++|+||.|+|..|.|..++||||+++|+++++++|+
T Consensus         4 t~~~E~~~~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGdG~~GsIr~~~~~~g~~~~~~Kerie~vD~e~~~~~y~   83 (157)
T d1xdfa1           4 TFEDESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEGGETKYVLHKIEAVDEANLRYNYS   83 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEEEE
T ss_pred             EEEEEEeccCCHHHHHHHHhhchhhccccchhheecceeecCCCCCCcEEEEEEcCCCccEEEEEEEEEEechhcEEEEE
Confidence            5577889999999999976 698884 77888999999999999999999999998888779999999999999999999


Q ss_pred             EEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC
Q 047053          116 VLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG  158 (192)
Q Consensus       116 ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g  158 (192)
                      +++|++   .|++|+.++++.|.   ++|  +|.+.|+.+|++..+
T Consensus        84 viEGd~l~~~~~s~~~~~k~~~~---~~g--gsv~k~t~eYe~~~~  124 (157)
T d1xdfa1          84 IVGGVGLPDTIEKISFETKLVEG---ANG--GSIGKVTIKIETKGD  124 (157)
T ss_dssp             EESSTTSCTTEEEEEEEEEEEEC---TTS--SEEEEEEEEEEESSS
T ss_pred             EEecccccccEEEEEEEEEEEcC---CCC--ceEEEEEEEEEECCC
Confidence            999984   68999999999998   344  499999999986443

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.92  E-value=1.6e-24  Score=169.14  Aligned_cols=140  Identities=12%  Similarity=0.108  Sum_probs=111.9

Q ss_pred             eEEEEEEEcCChhhHhhhh-cCCCCC-CccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053           38 TSLITQKINTPLSFVWPFV-RDFTNP-DKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v-~df~~~-~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      +.+.+.++++||+++|.++ .|++++ ++++|.++++++++|||++|+||.|+|..|.+...+||||+++|+++++++|+
T Consensus         4 t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eGdGg~GsIk~~~~~~~~~~~~~Kerie~iD~en~~~~y~   83 (155)
T d1icxa_           4 AFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYS   83 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTEEEEE
T ss_pred             EEEEeEEecCCHHHHhhhheeccchhchhhhhheeeeeEecCCCccceEEEEEeccCCceEEEEEEEEEEcccccEEEEE
Confidence            4567788999999999985 688884 78888999999999999999999999999888789999999999999999999


Q ss_pred             EEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047053          116 VLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL  182 (192)
Q Consensus       116 ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~  182 (192)
                      +++|++   .|++|+.++++.|.   ++|  +|.+.|+.+|++..+...+.....+...+...++.+.+.
T Consensus        84 viEGd~l~~~~~~~~~~~k~~~~---~~~--g~i~k~t~eYe~~g~~~~e~~~~~~ke~~~~~fK~iE~Y  148 (155)
T d1icxa_          84 IIGGEGLDESLEKISYESKILPG---PDG--GSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGY  148 (155)
T ss_dssp             EEEETTSCTTEEEEEEEEEEEEC---GGG--CEEEEEEEEEEESSSSCCHHHHTTHHHHHHHHHHHHHHH
T ss_pred             EEecccccccEEEEEEEEEEecC---CCC--CeEEEEEEEEEECCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence            999985   78999999999998   333  499999999987543333322222233333444444443

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=99.91  E-value=3.2e-24  Score=167.10  Aligned_cols=137  Identities=14%  Similarity=0.200  Sum_probs=109.8

Q ss_pred             eEEEEEEEcCChhhHhhhh-cCCCC-CCccCc-ccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEE
Q 047053           38 TSLITQKINTPLSFVWPFV-RDFTN-PDKYKN-FIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        38 ~~~v~~~I~apa~~VW~~v-~df~~-~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y  114 (192)
                      +-+.+.++++||+++|+++ .|+++ ++++.| .+++|++ +|||++|+||.|+|..|+|...+|||++++|+++++++|
T Consensus         4 t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~svev-eGdG~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~~~y   82 (153)
T d2bk0a1           4 THVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDY   82 (153)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEEE-ESSSSTTCEEEEECCTTSSCCEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEEE-ECCCCCCeEEEEEEecCccceeeEEEEEEEecCccEEEE
Confidence            4567899999999999986 58888 488888 7999995 799999999999999888878999999999999999999


Q ss_pred             EEEeCCC---CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 047053          115 RVLGGDH---RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGN--SDDDTRLFVGTVVKLNLARLAD  181 (192)
Q Consensus       115 ~ileg~~---p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~--~~~~~~~~l~~~~~~~L~~L~~  181 (192)
                      ++++|++   .|++|+.++++.|.   ++|  +|.+.|+.+|++..+.  .++.++.+.+. +...++.|.+
T Consensus        83 ~viEGd~l~~~y~s~~~~~~~~~~---~~g--gsv~k~t~eYe~~~~~~~~~e~~k~~~e~-~~~~~K~iE~  148 (153)
T d2bk0a1          83 SVIDGDILLGFIESIENHVVLVPT---ADG--GSICKTTAIFHTKGDAVVPEENIKYANEQ-NTALFKALEA  148 (153)
T ss_dssp             EEEESGGGTTTEEEEEEEEEEEEC---TTS--CEEEEEEEEEEESTTCCCCHHHHHHHHHH-HHHHHHHHHH
T ss_pred             EEEecccccccEEEEEEEEEEecC---CCC--CeEEEEEEEEEECCCCCCCHHHHHHHHHH-HHHHHHHHHH
Confidence            9999984   68999999999998   444  5999999999875432  33434443332 3334444444

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.64  E-value=6.5e-15  Score=108.42  Aligned_cols=134  Identities=10%  Similarity=0.024  Sum_probs=106.4

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      .+.++.|+||+++||+++.|+.+++.|.|.+.+++.. |+.++|+.+++++..+   ..+..+++++++ +++++|+...
T Consensus         3 ~s~si~I~Ap~e~Vw~~~~d~~~~~~W~~~~~~~~~~-~~~~~G~~~~~~~~~~---~~~~~~v~~~~p-~~~~~~~~~~   77 (137)
T d2b79a1           3 FSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLE-GEFTTGQKGKMKMEDM---PELAFTLVEVRE-NQCFSDLTAT   77 (137)
T ss_dssp             EEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEES-SSSSTTCEEEEEETTS---CCEEEEECCCBT-TTEEEEEEEE
T ss_pred             eEEEEEEcCCHHHHHHHHhhhhhCccccCcccceeec-ccccceEEEEEEEcCC---cceeeeeecccC-CcEEEEEecc
Confidence            4678999999999999999999999999999998864 5546899999988755   346778888977 6789987632


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE-GNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~-g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                         |...+.....+.+.   ++|  +|.+.|+..+..+. ......+...++..+...|++||+.+|.
T Consensus        78 ---~~~~~~~~~~~~~~---~~g--~t~vt~~~~~~g~~~~~~~~~~~~~v~~~~~~~l~~LK~~~Ea  137 (137)
T d2b79a1          78 ---PFGNVLFEHEILEN---PDG--TISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILET  137 (137)
T ss_dssp             ---TTEEEEEEEEEEEC---TTS--CEEEEEEEEECSCSCCTTHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred             ---cceeeeeEEEEccC---CCC--cEEEEEEEecccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               56678888889887   444  49999999987533 3333446666778899999999999984

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=1.9e-14  Score=106.99  Aligned_cols=138  Identities=18%  Similarity=0.148  Sum_probs=103.7

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCC-CCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVL  117 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG-~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~il  117 (192)
                      +..++.|+||+++||+++.|+.+++.|.|.+.++++.+++| +.+.-..+.+. +.+ .....+++ .++.++.+.|.+.
T Consensus         3 v~~~~~I~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-~~~~~~~i~~~~~   79 (146)
T d2d4ra1           3 VRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAM-GKK-VRWLEEEE-WDDENLRNRFFSP   79 (146)
T ss_dssp             EEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEET-TEE-EEEEEEEE-EETTTTEEEEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHChhhHHhhccccEEEEEEEecCCcceEEEEEEee-eee-EEEEEEEE-EcCCCCEEEEEEc
Confidence            45678999999999999999999999999999999876543 33322223322 211 24455544 5677999999999


Q ss_pred             eCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          118 GGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE----GNSDDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       118 eg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~----g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      .|  ++..|.+++++.|.   ++|   |.+.|+.+|+...    +.....+...++..+...|++|++.++.+.
T Consensus        80 ~g--~~~~~~g~w~l~~~---~~g---T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~s  145 (146)
T d2d4ra1          80 EG--DFDRYEGTWVFLPE---GEG---TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAAS  145 (146)
T ss_dssp             EE--SCSEEEEEEEEEEC---SSS---EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cC--CcceEEEEEEEEec---CCc---eEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            98  46789999999998   454   9999999886532    334556667788889999999999888653

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.58  E-value=4.1e-14  Score=105.70  Aligned_cols=141  Identities=8%  Similarity=-0.009  Sum_probs=104.4

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCC-CCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAG-EVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVL  117 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG-~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~il  117 (192)
                      .+-+++|+||+++||+++.|+.+++.|.|.+.++.+.++++ +++....+....+.. ....+.....++..+.+.|...
T Consensus         5 ~e~si~I~Ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   83 (155)
T d2rera1           5 TDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGR-VWEWVSHRVPDKGSRTVRAHRV   83 (155)
T ss_dssp             EEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEEEEEECCCTTSC-CCEEEEEEEEEGGGTEEEEEES
T ss_pred             EEEEEEECCCHHHHHHHHHChhhHhhhhhhceEEEEeecCCCceEEEEEEEEeeeee-eEEEEEEEEEcCCccEEEEEee
Confidence            45678999999999999999999999999999998875543 344433333322222 2333334456777777877775


Q ss_pred             eCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEec--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          118 GGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVD--IPEGNSDDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       118 eg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~--~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      .+ .++..+.++++|.|.   ++   +|.+.|..+++  ++.+.....+...++..+...|++||+.+|+.+
T Consensus        84 ~~-~~~~~~~~~w~~~~~---~~---gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~~  148 (155)
T d2rera1          84 ET-GPFAYMNLHWTYRAV---AG---GTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRH  148 (155)
T ss_dssp             SC-TTEEEEEEEEEEEEE---TT---EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cC-ccceeeEEEEEEeec---CC---ccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            43 578899999999998   44   48999888765  444555666788889999999999999999765

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.54  E-value=3.3e-14  Score=105.73  Aligned_cols=84  Identities=8%  Similarity=0.111  Sum_probs=68.4

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      .++++.|++||+++|.++++               .++|+.            +   ...+||++++|+++++++|++++
T Consensus         7 l~~eveik~~a~kf~~~~~~---------------~~~~~~------------~---~~~KerVe~vD~en~sity~vie   56 (120)
T d1vjha_           7 LSVKFDVKCPADKFFSAFVE---------------DTNRPF------------E---KNGKTEIEAVDLVKKTMTIQMSG   56 (120)
T ss_dssp             EEEEEEESSCHHHHHHHHHH---------------HTTSCS------------S---TTCEEEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEecCCHHHHHHHhhh---------------ccCCCC------------C---cccEEEEEEEcCCCCEEEEEEEe
Confidence            46788999999999999953               223332            1   23499999999999999999999


Q ss_pred             CCC--CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC
Q 047053          119 GDH--RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP  156 (192)
Q Consensus       119 g~~--p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~  156 (192)
                      |++  .|++|.++|+|+|.   ++| .+|.+.|++.|+..
T Consensus        57 Gdvl~~yksf~~~i~~~p~---~~g-~gsi~kwt~eYek~   92 (120)
T d1vjha_          57 SEIQKYFKTLKGSIAVTPI---GVG-DGSHVVWTFHFEKV   92 (120)
T ss_dssp             TTGGGTEEEEEEEEEEEEC---SSS-SCEEEEEEEEEEES
T ss_pred             eccccceeEEEEEEEEEec---CCC-CceEEEEEEEEEeC
Confidence            996  89999999999998   333 25999999998754

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.35  E-value=3.1e-12  Score=93.16  Aligned_cols=140  Identities=8%  Similarity=-0.015  Sum_probs=92.6

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRV  116 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~i  116 (192)
                      .+.+-+++|+||+++||+++.|+.++..|.|.+++++...+.  .+.......................++... ..+..
T Consensus         3 ~k~e~si~I~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   79 (147)
T d2ns9a1           3 VRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGS--FTIELRLSLGPLRGDARVRASFEDLEKPSK-ATVKG   79 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTE--EEEEEEEESSSSEEEEEEEEEEEEEETTTE-EEEEE
T ss_pred             EEEEEEEEEcCCHHHHHHHHhCHhhhhhcccchhheeecccc--cceeEEEEEEEEeeEeeeeeeeeeecCCcc-eeEEE
Confidence            456778999999999999999999999999999988764332  122222222111001233344445555444 44444


Q ss_pred             Ee-CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          117 LG-GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIP---EGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       117 le-g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~---~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      .. .......+..++.+.|.   ++   +|.+.|..+++.+   .......+..+++..+...|++|++.++.
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~---~~---gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~~  146 (147)
T d2ns9a1          80 SGRGAGSTLDFTLRFAVEPS---GG---GSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  146 (147)
T ss_dssp             EEECSSEEEEEEEEEEEEEE---TT---EEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             eeeccccceeeEEEEEEEec---CC---CcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            43 33456788999999998   44   4899999887643   23334556677788888899999888764

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.26  E-value=8.4e-11  Score=87.53  Aligned_cols=132  Identities=16%  Similarity=0.111  Sum_probs=94.2

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEE
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      |-+-+.+++++|++|+++||++++|+.+++.|.|.+.+++..+|    +  |.+....  |...++-++++. +.++.+.
T Consensus         2 p~~~~~~~~i~I~~p~~~v~~~~~d~~~~p~w~~~l~~~~~~~~----~--~~~~~~~--~~G~~~~~i~~~-~p~~~i~   72 (133)
T d2qpva1           2 PVMQSRIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEADG----E--DWIAKGG--PLGEVRVNFAPH-NEFGVID   72 (133)
T ss_dssp             CCCCEEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEEET----T--EEEEECS--SSCEEEEEECCC-CSSCBCC
T ss_pred             CcceEEEEEEEECCCHHHHHHHHhChhhcchhhhccceeEEecC----C--cEEEEec--CCCcEEEEEEEc-CCCCEEE
Confidence            45567788999999999999999999999999999998876644    3  2333321  223456677764 5588999


Q ss_pred             EEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          114 FRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       114 Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      |++..|+.  ..-..+|++.|.   ++   +|.+.++. +. +++.....+... ...+...|++||+.+|.
T Consensus        73 w~~~~~~~--~~g~v~fr~~~~---g~---gt~v~~~~-~~-ppg~~~~~~~~~-~~~v~~dL~rlK~l~Ea  133 (133)
T d2qpva1          73 HVVTLPDG--LKVYNALRVTPN---GS---GTEVSFTL-LR-LEGMTDEDFEQD-ASAITADLEMLKSLLEA  133 (133)
T ss_dssp             EEEECTTS--CEEEEEEEEEEE---TT---EEEEEEEE-EC-CTTCCHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_pred             EEEecCCC--CEEEEEEEEccC---CC---eEEEEEEE-Ee-CCCCchHHHHHH-HHHHHHHHHHHHHHhcC
Confidence            99998753  233456777776   34   48887776 33 346666655553 55678899999999884

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.20  E-value=6.8e-10  Score=83.04  Aligned_cols=140  Identities=13%  Similarity=0.024  Sum_probs=101.1

Q ss_pred             EEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCC--CCceeEEEEEEEecCCceEEEEE
Q 047053           40 LITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGP--PATTSTERLEMLDDENHILSFRV  116 (192)
Q Consensus        40 ~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~--p~~~vkErL~~iD~~~~~~~Y~i  116 (192)
                      .++..|++|+++||+++.|+...+.|.|.+.++++.+. +.+-|......+..|.  ......-+. ..+..++.+....
T Consensus         5 ~~~~vi~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   83 (148)
T d1t17a_           5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRV-RRDKDARSIDVSL   83 (148)
T ss_dssp             EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEE-EEETTTCEEEEEE
T ss_pred             eEEEEeCCCHHHHHHHHHHHHhhhhhccccCccEEEecccccccceeeEEEEEEeeeeEEEEEEEe-eecCCceEEEEec
Confidence            47789999999999999999999999999999988654 2222333333333232  112232332 3556677777766


Q ss_pred             EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047053          117 LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFK  188 (192)
Q Consensus       117 leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~  188 (192)
                      .+|  +++...+..++.|.   ++   +|.|.|..+|+.+.+.....+..+++.+....+++.+++|+.+-+
T Consensus        84 ~~g--~f~~l~~~W~f~~~---~~---~T~V~~~l~fe~~~~l~~~~~~~~~~~~~~~~i~aF~~Ra~~lyg  147 (148)
T d1t17a_          84 LYG--PFKRLNNGWRFMPE---GD---ATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQQLHG  147 (148)
T ss_dssp             SST--TSSCEEEEEEEEEE---TT---EEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCc--hhhhcccceeeccC---CC---ceEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            666  77889999999998   44   499999999998766555666666777777788888888887644

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=99.04  E-value=4.5e-09  Score=79.30  Aligned_cols=148  Identities=11%  Similarity=-0.001  Sum_probs=95.0

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCc-ccceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCc
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKN-FIRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENH  110 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~  110 (192)
                      |.+-...++.+|+||+++||+++.|...+..|.+ .--++...+.+..+|....+.+.  +|. ...+.-+++++++ ++
T Consensus         9 ~~~~~i~i~r~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~-~~~~~g~v~~i~~-~~   86 (163)
T d1xuva_           9 PGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGN-EYAFHGVNHDVTE-PE   86 (163)
T ss_dssp             TTCSEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSC-EEEEEEEEEEEET-TT
T ss_pred             CCCceEEEEEEeCCCHHHHHHHHcChHHhhhccCCCCccceeeeeeceeCceEEEEEEecCCC-ceEEEEEEEEecC-CC
Confidence            3444566889999999999999999888888864 32344444455444544444443  332 1256778999998 66


Q ss_pred             eEEEEEEeCCC--CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047053          111 ILSFRVLGGDH--RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASFK  188 (192)
Q Consensus       111 ~~~Y~ileg~~--p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~~  188 (192)
                      ++.|+.--+..  +-.....++.+.+.   ++|  .|.+.+...+..+... +......+.......|++|++.++++=+
T Consensus        87 rl~~tw~~~~~~~~~~~~~v~~~~e~~---~~g--~t~~~~~~~~~~~~~~-~~~~~~g~~~GW~~~L~~L~~~le~~~~  160 (163)
T d1xuva_          87 RIISTFEFEGLPEKGHVILDTARFEAL---PGD--RTKLTSHSVFQTIEDR-DGMLQSGMEEGINDSYERLDELLEKMKK  160 (163)
T ss_dssp             EEEEEEEETTSSSSCCCEEEEEEEEEE---TTT--EEEEEEEEECSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeccCCCCCCCcEEEEEEEEEe---CCC--cEEEEEEEcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            78887643332  33456788899987   455  4777777766543211 1112223344567789999999998754


Q ss_pred             c
Q 047053          189 S  189 (192)
Q Consensus       189 ~  189 (192)
                      +
T Consensus       161 ~  161 (163)
T d1xuva_         161 L  161 (163)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=98.76  E-value=6.4e-08  Score=70.62  Aligned_cols=140  Identities=9%  Similarity=0.019  Sum_probs=84.5

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      .+=+.+|++|+++||+++.|...+..|.|.+++++.++.+...+.++ +.++.-...-..+.++...+...+ +......
T Consensus         3 ~s~~~~i~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~   80 (147)
T d2pcsa1           3 GNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQ-IGIAAVKGKYDAIIEVTDIKPPYH-YKLLVNG   80 (147)
T ss_dssp             EEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEEEEEEE-ECCGGGCEEEEEEEEEEEEETTTE-EEEEEEE
T ss_pred             CCceEEeCCCHHHHHHHHcCHHHHHhhCcchhhceecCCCEEEEEEE-EeecceeeeeEEEEEEeccCcccc-eeEeecc
Confidence            45568999999999999999999999999999988874321122222 222211001134556666666443 4444433


Q ss_pred             C-CCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          119 G-DHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEG---NSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       119 g-~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g---~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      . ..+...+.+...+.+.   +++  +|.|.|+++++....   .....+...++.++..-++++++..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~---~~~--~T~v~~~~~~~~~g~l~~l~~~li~~~~~~~~~~f~~~~~~~l~~  146 (147)
T d2pcsa1          81 EGGPGFVNAEGVIDLTPI---NDE--CTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAK  146 (147)
T ss_dssp             EETTEEEEEEEEEEEEES---SSS--EEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhcceeEEeeecc---cCC--cEEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            2 2355566666666665   333  599999998775221   223334555556666666666665543

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.67  E-value=8.1e-07  Score=66.63  Aligned_cols=148  Identities=9%  Similarity=-0.076  Sum_probs=86.7

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCc-ccceeEeecCCCCCCeEEEEEeec-CCCCceeEEEEEEEecCCce
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKN-FIRSCTMKVGAGEVGSVRDVNIIS-GPPATTSTERLEMLDDENHI  111 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~~-G~p~~~vkErL~~iD~~~~~  111 (192)
                      ++.....++..|+||+++||+++.|...+..|++ .--.+...+++..+|..-++.+.. +.....+.-++.++++ +++
T Consensus         4 ~~~~~i~ier~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~v~e~~p-~~~   82 (164)
T d2il5a1           4 NEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVM-DEY   82 (164)
T ss_dssp             CEEEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEET-TTE
T ss_pred             CCcEEEEEEEEECCCHHHHHHHHcCHHHHhCcccCCCccceEEEeecccCceEEEEEecCCcceEEEEEEEEEEcC-CCE
Confidence            4456678889999999999999999888888754 222333344554455444444432 1111255668899987 777


Q ss_pred             EEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC--CCCHHHHH-------HHHHHHHHHHHHHHHHH
Q 047053          112 LSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPE--GNSDDDTR-------LFVGTVVKLNLARLADL  182 (192)
Q Consensus       112 ~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~--g~~~~~~~-------~~l~~~~~~~L~~L~~~  182 (192)
                      |.|+.--.+.+-.....++.+.+.   ++|  +|.+....+.-++.  ......+.       ..+..-....|++|++.
T Consensus        83 i~~t~~~~~~~~~~~~~~~~~~e~---~~g--gT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~  157 (164)
T d2il5a1          83 VKMTIGMPGLSETQDVIEVEFFER---ETG--GTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHV  157 (164)
T ss_dssp             EEEEESCC--CCCCEEEEEEEEEC---SSS--SEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeccCCCCCceEEEEEEEEc---CCC--CEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888763222233334556666554   233  48888876643322  22221111       22233456677888888


Q ss_pred             HHhcc
Q 047053          183 AMASF  187 (192)
Q Consensus       183 ae~~~  187 (192)
                      +|...
T Consensus       158 lE~g~  162 (164)
T d2il5a1         158 IETST  162 (164)
T ss_dssp             HHTTS
T ss_pred             HhccC
Confidence            87653

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.52  E-value=6.1e-07  Score=67.38  Aligned_cols=143  Identities=10%  Similarity=0.025  Sum_probs=85.5

Q ss_pred             eeEEEEEEEcCChhhHhhhhcCCCCCCccC-cccceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCceEE
Q 047053           37 CTSLITQKINTPLSFVWPFVRDFTNPDKYK-NFIRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        37 ~~~~v~~~I~apa~~VW~~v~df~~~~~w~-p~v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      ....++.+|+||+++||+++.|...+..|+ |.--.+...+++-.+|..-.+.+.  +|. .....=++.++++ ++++.
T Consensus         5 ~~l~i~r~i~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~-~~~~~g~v~ei~p-~~rl~   82 (165)
T d1xfsa_           5 LDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGN-KFPNSGCFLEVTD-EKRLI   82 (165)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCC-EEEEEEEEEEEET-TTEEE
T ss_pred             cEEEEEEEEcCCHHHHHHHHcCHHHHhhcCCCCCccceeecccceeCceEEEEEECCCCc-eeeEEEEEEEecC-CcEEE
Confidence            346788999999999999999988888885 321133333455444444333333  332 2245567888987 67788


Q ss_pred             EEEEe--------------CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Q 047053          114 FRVLG--------------GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARL  179 (192)
Q Consensus       114 Y~ile--------------g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L  179 (192)
                      |+..-              .+.+......++.+.+.   ++|   |.+.....+..+.. ........+..-....|++|
T Consensus        83 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---~~g---T~lt~~~~~~~~~~-~~~~~~~g~~~GW~~~l~~L  155 (165)
T d1xfsa_          83 WTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPT---SSG---TRYTACAMHNTPGQ-RKLHEEMGFHEGWGTTITQL  155 (165)
T ss_dssp             EESSEEGGGEECCC-----------CCEEEEEEEEC---SSS---EEEEEEEECSSHHH-HHHHHTTTHHHHHHHHHHHH
T ss_pred             EEEeecccccccccccccccCCCCccEEEEEEEEEc---CCc---EEEEEEEEcCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            86421              11123345678888887   454   88877665443221 11111122344567889999


Q ss_pred             HHHHHhccc
Q 047053          180 ADLAMASFK  188 (192)
Q Consensus       180 ~~~ae~~~~  188 (192)
                      ++.+++..+
T Consensus       156 ~~~le~~~a  164 (165)
T d1xfsa_         156 EELLKQEKA  164 (165)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHhcCC
Confidence            999987653

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.51  E-value=3.1e-06  Score=61.73  Aligned_cols=135  Identities=13%  Similarity=0.073  Sum_probs=81.7

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCc-ccceeEeecCCCCCCeEEEEEee--cCCCCceeEEEEEEEecCCceEEEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKN-FIRSCTMKVGAGEVGSVRDVNII--SGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p-~v~s~~~~eGdG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      ..++.+|+||+++||+++.|...+..|++ .--.+...+++-.+|..-++.+.  +++....+.=++.++++ ++++.|+
T Consensus         4 i~~~r~i~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~~~~~~g~v~~~~p-~~~i~~t   82 (143)
T d1z94a1           4 IRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVP-GERIRYT   82 (143)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEET-TTEEEEE
T ss_pred             EEEEEEECCCHHHHHHHhcCHHHHhhhhCCCCccceeEeeccccceeEEEEEeeCCCCcEEEEEEEEEEecC-CeEEEEE
Confidence            44678999999999999999888888754 22233344455445544334332  22222245567888987 6678888


Q ss_pred             EEeCCCCc-ceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          116 VLGGDHRL-QNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       116 ileg~~p~-~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      -...+... .....++.+.+.   ++|   |.+.-..+. .++.....    .+..-....|++|++.+|+
T Consensus        83 ~~~~~~~~~~~~~v~~~l~~~---~~g---T~lt~~~~~-~~~~~~~~----~~~~GW~~~l~~L~~~lE~  142 (143)
T d1z94a1          83 DRFDDAGLPGDMITTITLAPL---SCG---ADLSIVQEG-IPDAIPPE----NCYLGWQQSLKQLAALVEP  142 (143)
T ss_dssp             EEESCCC---CEEEEEEEEEE---TTE---EEEEEEEEC-CCTTSCHH----HHHHHHHHHHHHHHHHHSC
T ss_pred             EeccCCCCCCcEEEEEEEEEc---CCC---EEEEEEEEc-CCChhHHH----HHHHHHHHHHHHHHHHHcC
Confidence            65433322 345678889888   453   666544332 22222222    2233456778899998875

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=98.24  E-value=4.7e-06  Score=61.72  Aligned_cols=137  Identities=7%  Similarity=-0.135  Sum_probs=78.8

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCc-c-----cceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKN-F-----IRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHIL  112 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p-~-----v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~  112 (192)
                      +..+++|+||+++||+++.+  .+..|++ .     +..+.+..+.|  |..+ +...+|.  ..+.=++.++++ .+++
T Consensus         6 v~~~~~i~Ap~e~Vf~a~te--~~~~Ww~~~~~~~~~~~~~~~~~~g--G~~~-~~~~dG~--~~~~g~v~ei~p-~~rl   77 (155)
T d1zxfa1           6 VRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVDKKG--GRWY-EIDEQGE--EHTFGLIRKVDE-PDTL   77 (155)
T ss_dssp             EEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEETTT--TEEE-CCCTTTS--CCCCEEEEEEET-TTEE
T ss_pred             EEEEEEEeCCHHHHHHHHHh--hhHhhcCCCCCCceEEEEEEeeCCC--ceEE-EEccccc--eeeeEEEEEEec-CcEE
Confidence            45678999999999999986  4677754 2     22222332322  5433 2233442  233346888987 7789


Q ss_pred             EEEEEeCCC----CcceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047053          113 SFRVLGGDH----RLQNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPEGNSDDDTRLFVGTVVKLNLARLADLAMASF  187 (192)
Q Consensus       113 ~Y~ileg~~----p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~~  187 (192)
                      .|+--.++.    +-.....++.+.+.   ++|  +|.+.-.-+ +........+.+...+..-....|++|++.+|..+
T Consensus        78 ~~tw~~~~~~~~~~~~~s~v~~~~~~~---~~~--~T~ltl~h~g~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~~~  152 (155)
T d1zxfa1          78 VIGWRLNGFGRIDPDNSSEFTVTFVAD---GQK--KTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDEEG  152 (155)
T ss_dssp             EEECCCSSSSSCCCSSCCCEEEEEEEE---TTT--EEEEEEEECSSTTSCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCccccccccceEEEEEEEec---CCC--CEEEEEEEeccCcccchhHHHHHhhhhhhHHHHHHHHHHHhhhhc
Confidence            888543321    22345677888887   344  476654433 22211111112222333446788999999999876


Q ss_pred             c
Q 047053          188 K  188 (192)
Q Consensus       188 ~  188 (192)
                      +
T Consensus       153 ~  153 (155)
T d1zxfa1         153 A  153 (155)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.22  E-value=1.4e-05  Score=57.83  Aligned_cols=92  Identities=14%  Similarity=0.059  Sum_probs=62.2

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      ..+++.|+||+++||+++.+...+..|.+...      .+.++|..-.+...+    ..+.=++.++++ ++++.|+.-.
T Consensus         7 i~~~~~i~ap~e~Vw~alt~p~~~~~W~~~~~------~~~~~g~~~~~~~~~----~~~~g~v~~~~~-~~~l~~~~~~   75 (138)
T d1xn5a_           7 IKKEVRFNAPIEKVWEAVSTSEGLAFWFMEND------LKAETGHHFHLQSPF----GPSPCQVTDVER-PIKLSFTWDT   75 (138)
T ss_dssp             EEEEEEESSCHHHHHHHTTSHHHHHTTSCCBC------CCSCTTCEEEEECSS----CEEEEEEEEEET-TTEEEEEETT
T ss_pred             EEEEEEECCCHHHHHHHHcCHHHhceEccCCc------ccccceeeEEecCCc----cceeEEEEEEeC-CcEEEEEecC
Confidence            56789999999999999999999888886421      111344433333222    234557888987 6789998633


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEE
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYV  152 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~  152 (192)
                      +     +...++.+.|.   ++|   |.+..+.+
T Consensus        76 ~-----~~~v~~~l~~~---~~g---T~lt~~~~   98 (138)
T d1xn5a_          76 D-----GWSVTFHLKEE---ENG---TIFTIVHS   98 (138)
T ss_dssp             T-----TEEEEEEEEEC---SSS---EEEEEEEE
T ss_pred             C-----CeEEEEEEEEc---CCc---EEEEEEEe
Confidence            2     35778889887   454   77776644

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.21  E-value=1.9e-05  Score=59.84  Aligned_cols=126  Identities=10%  Similarity=0.004  Sum_probs=82.3

Q ss_pred             CCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEE
Q 047053           34 PNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        34 ~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      .|..+-.+++.|++|+++||+++.+...+..|++......+..  |  |.++ +.+.++    ...-++.++++ ++++.
T Consensus         9 ~~~~~f~~er~i~ap~e~Vw~AlTdpe~l~~W~~~~~~~d~~~--G--G~~~-~~~~~~----~~~~~v~~~ep-p~rL~   78 (160)
T d2nn5a1           9 NQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGELGV--N--GFWR-FILPDF----EETMPFTDYAE-EKYLG   78 (160)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEECST--T--CEEE-EEETTE----EEEEEEEEEET-TTEEE
T ss_pred             CCcEEEEEEEEecCCHHHHHHHHcCHHHHHhhCCCCCcccccC--C--CeeE-EEcCCC----CcceEEEEEec-CCEEE
Confidence            5677888999999999999999999999999998643322221  2  5554 445443    34556888987 88899


Q ss_pred             EEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047053          114 FRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMA  185 (192)
Q Consensus       114 Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~  185 (192)
                      |+--+       -..++.+.|.   ++|  +|.+.-+-....  +.... ... ...--..+|++|++.+|.
T Consensus        79 ~tW~~-------~~v~~eL~~~---~~~--~t~l~l~~~~~~--~~~~~-~~~-~~~GW~~~Ld~L~~~leg  134 (160)
T d2nn5a1          79 VTWDT-------GIIYFDLKEQ---APH--QTLLVFSESLPE--NFTTP-RHK-DIAGWSIVLNRLKQVVET  134 (160)
T ss_dssp             EEETT-------EEEEEEEEEE---ETT--EEEEEEEEEECT--TCSSC-HHH-HHHHHHHHHHHHHHHHHC
T ss_pred             EEecC-------ceEEEEEecC---CCC--eEEEEEEEecCc--cccch-hhh-hHHHHHHHHHHHHHHHcC
Confidence            98622       2467888886   344  366554443322  11111 111 122358899999999875

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.12  E-value=3.4e-05  Score=55.83  Aligned_cols=132  Identities=10%  Similarity=0.008  Sum_probs=72.7

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCc-ccceeEeecC--CCCCCeEEEEEee--cCCCCceeEEEEEEEecCCceEE
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKN-FIRSCTMKVG--AGEVGSVRDVNII--SGPPATTSTERLEMLDDENHILS  113 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p-~v~s~~~~eG--dG~vG~VR~~~~~--~G~p~~~vkErL~~iD~~~~~~~  113 (192)
                      ..++.+|+||+++||+++.|...+..|++ .-..+...+.  +-.+|---.+.+.  +|. ...+.-++.++++ ++++.
T Consensus         3 l~i~r~i~a~~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~-~~~~~g~v~~~~p-~~rl~   80 (143)
T d3elia1           3 LRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQ-RYKVSGQVTHVKP-PQSVG   80 (143)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCC-EEEEEEEEEEEET-TTEEE
T ss_pred             EEEEEEECCCHHHHHHHhcCHHHHhhhcCCCCceeeeeeEEEeeccCccEEEEEECCCCc-EEEEEEEEEEcCC-CCEEE
Confidence            45789999999999999999888877763 2112211111  2133333333333  231 1245668899998 56676


Q ss_pred             EEE--EeCCC-CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          114 FRV--LGGDH-RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA  183 (192)
Q Consensus       114 Y~i--leg~~-p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~a  183 (192)
                      |+-  .+.+. +-..-..++.+.|.   ++|   |.+....+- .+.    .........-....|++|++.+
T Consensus        81 ~t~~~~~~~~~~~~~~~vt~~l~~~---~~g---T~l~~~~~~-~~~----~~~~~~~~~GW~~~L~~L~~~l  142 (143)
T d3elia1          81 FTWGWHDDDDRRGAESHVMFIVEPC---AKG---ARLILDHRE-LGD----DEMSLRHEEGWTSSLRKLAAEL  142 (143)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECCBC-----C---EEEEEEEES-CSC----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCCCCCCCCcEEEEEEEEEc---CCC---EEEEEEEEc-CCC----HHHHHHHHHHHHHHHHHHHHHh
Confidence            653  33322 11233456777776   443   777655431 121    2233334444577777887764

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=98.11  E-value=3.9e-05  Score=56.32  Aligned_cols=125  Identities=15%  Similarity=0.051  Sum_probs=74.6

Q ss_pred             EEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe
Q 047053           39 SLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG  118 (192)
Q Consensus        39 ~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile  118 (192)
                      ...++.|+||+++||+++.|...+..|++..   .+   +-.+|..-.+...+|    .+.=++.++++ ++++.|+--.
T Consensus        10 i~~~~~i~ap~e~Vw~alTdp~~l~~W~~~~---~~---~~~~G~~~~~~~~~g----~~~g~v~~~~p-~~~l~~tw~~   78 (143)
T d1xn6a_          10 IKQTIVFNASIQKVWSVVSTAEGIASWFMPN---DF---VLEVGHEFHVQSPFG----PSPCKVLEIDE-PNHLSFSWDT   78 (143)
T ss_dssp             EEEEEEESSCHHHHHHTTSCSHHHHTTSCCB---CC---CCCTTCEECBCCTTC----CCCEEEEEEET-TTEEEEEETT
T ss_pred             EEEEEEECCCHHHHHHHhcChHHhceEeecc---Cc---ccccCceEEEecccc----ceeEEEEEEeC-CcEEEEEEcC
Confidence            5678899999999999999999998897531   11   112333222222223    22346778987 7789998632


Q ss_pred             CCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEE-ecCCCC------CCHHHHHHHHHHHHHHHH-HHHHHHHH
Q 047053          119 GDHRLQNYRSVTSVNDFISEETGEVYCVVLESYV-VDIPEG------NSDDDTRLFVGTVVKLNL-ARLADLAM  184 (192)
Q Consensus       119 g~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~-~~~~~g------~~~~~~~~~l~~~~~~~L-~~L~~~ae  184 (192)
                      .     ....++.+.+.   ++|  .|.+.-.-+ ++....      .........+..-....| +.||+.+|
T Consensus        79 ~-----~~~v~~~l~~~---~~G--~T~l~l~h~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~lE  142 (143)
T d1xn6a_          79 D-----GWVVSFDLKDL---GDN--KTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVE  142 (143)
T ss_dssp             T-----TEEEEEEEEEE---ETT--EEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             C-----CcEEEEEEEEc---CCC--cEEEEEEEeCCCCchhhhhhcchhhHHHHHHHhhCHHHHHHHHHHHHhC
Confidence            2     35678889887   455  377665433 332221      122223333334344445 68888876

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=97.72  E-value=0.00023  Score=53.99  Aligned_cols=138  Identities=9%  Similarity=0.087  Sum_probs=82.3

Q ss_pred             CCCCCCceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCC--------------CC
Q 047053           30 FPPSPNTCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGP--------------PA   95 (192)
Q Consensus        30 ~~~~~~~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~--------------p~   95 (192)
                      ++-+.+.-...++..|+||+++||+++.|...+..|+... .+..     .+|..-.+.+.++.              ..
T Consensus        12 ~g~~~d~~~l~~er~~~Ap~e~VW~AlTdpe~l~~W~~p~-~~d~-----~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (183)
T d2k5ga1          12 HGARLDAQSIRFERLLPGPIERVWAWLADADKRARWLAGG-ELPR-----QPGQTFELHFNHAALTAETAPARYAQYDRP   85 (183)
T ss_dssp             CCCCSCCSSEEEEEEESSSSHHHHHHHHCHHHHTTTSCCC-CCCS-----STTCEEEEEECGGGSCCSSCCSSCSGGGSC
T ss_pred             cccccccceEEEEEEeCCCHHHHHHHHhChHHHhhhcCCC-Cccc-----cCCCEEEEEecCCCCcccccccccccCCCc
Confidence            5555666678889999999999999999988888886421 1111     22322223332110              01


Q ss_pred             ceeEEEEEEEecCCceEEEEEEeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 047053           96 TTSTERLEMLDDENHILSFRVLGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLN  175 (192)
Q Consensus        96 ~~vkErL~~iD~~~~~~~Y~ileg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~  175 (192)
                      ..+.=++.++++ .+++.|+...++.. ..-..++.+.+.   ++|   |.+.-.-+. .++   .+....+ ..--...
T Consensus        86 ~~~~g~v~~~~p-~~rl~~tw~~~~~~-~~s~v~~~l~~~---g~g---T~ltl~~~~-~~~---~~~~~~~-~~GW~~~  152 (183)
T d2k5ga1          86 IVARHTLLRCEP-PRVLALTWGGGAGE-APSEVLFELSEA---GEQ---VRLVLTHTR-LAD---RAAMLDV-AGGWHAH  152 (183)
T ss_dssp             EEEEEEEEEEET-TTEEEEECCCCSSS-SCCEEEEEEEEC---SSS---EEEEEEEEC-CCS---HHHHHHH-TTTTTTH
T ss_pred             eeEEEEEEEEeC-CeEEEEEeccCCCC-CcEEEEEEEEEc---CCc---EEEEEEEec-CCC---hhhHHHH-hhhHHHH
Confidence            245667899997 77899987665332 223467888887   454   666533321 111   1222222 3334667


Q ss_pred             HHHHHHHHHhc
Q 047053          176 LARLADLAMAS  186 (192)
Q Consensus       176 L~~L~~~ae~~  186 (192)
                      |++|++.++..
T Consensus       153 L~~L~~~leg~  163 (183)
T d2k5ga1         153 LAVLAGKLAGQ  163 (183)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHCCC
Confidence            88888888753

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00019  Score=52.01  Aligned_cols=124  Identities=6%  Similarity=-0.016  Sum_probs=71.3

Q ss_pred             ceeEEEEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEE
Q 047053           36 TCTSLITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        36 ~~~~~v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      .|...++.+++||+++||+++.|...+..|...-.......|    |..+   +.+|    .+.=+++++++ ++++.|+
T Consensus         3 T~~i~~~r~~~ap~e~Vw~a~tdpe~l~~W~~~~~~~d~~~G----g~f~---~~~g----~~~G~~~ev~p-~~rlv~t   70 (132)
T d1x53a1           3 TCKITLKETFLTSPEELYRVFTTQELVQAFTHAPATLEADRG----GKFH---MVDG----NVSGEFTDLVP-EKHIVMK   70 (132)
T ss_dssp             EEEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCBCCCSTT----CCCB---BTTT----TEECCEEEEET-TTEEEEE
T ss_pred             ceEEEEEEEECCCHHHHHHHHcCHHHHHhhhCCccccccccC----CEEE---EEec----ceeEEEEEEeC-CCEEEEE
Confidence            577889999999999999999998888888753222222222    3322   3333    12335677877 5556655


Q ss_pred             E--EeCCCCcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          116 V--LGGDHRLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLA  183 (192)
Q Consensus       116 i--leg~~p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~a  183 (192)
                      -  -+.+.+ ..-..++.+.+.   +++   |.+.-.-+.-+     .......-+++-..-|++|++.+
T Consensus        71 w~~~~~~~~-~~s~vt~~l~~~---~~~---T~l~l~~~g~p-----~~~~e~~~~GW~~~~~~~lk~~f  128 (132)
T d1x53a1          71 WRFKSWPEG-HFATITLTFIDK---NGE---TELCMEGRGIP-----APEEERTRQGWQRYYFEGIKQTF  128 (132)
T ss_dssp             EEETTSCTT-CCEEEEEECCBC---SSC---EEEEEEEEEEE-----HHHHHHHHHTTHHHHHHHHHHHT
T ss_pred             EecCCCCCC-CcEEEEEEEEEC---CCc---EEEEEEEECCC-----cchHHHHHhhHHHHHHHHHHHHc
Confidence            3  333221 123456677776   443   77766554322     12223333444445677787764

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.035  Score=41.39  Aligned_cols=139  Identities=7%  Similarity=-0.114  Sum_probs=80.6

Q ss_pred             EEEEEcCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeec-CCC----CceeEEEEEEEecCCceEEEE
Q 047053           41 ITQKINTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIIS-GPP----ATTSTERLEMLDDENHILSFR  115 (192)
Q Consensus        41 v~~~I~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~-G~p----~~~vkErL~~iD~~~~~~~Y~  115 (192)
                      .+.+|++|+++|++++.|......|-|.+.++++++-.+.-..+-...+.. ..|    ...+--+-..-+++...+...
T Consensus        48 ~~~~i~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~~~~~~~~~  127 (199)
T d1jssa_          48 AQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGV  127 (199)
T ss_dssp             EEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEeCCCHHHHHHHHhChhhhhhcccchheEEEEEEcCCCcEEEEEEEcccCCCCcCCcEEEEEEEEEEcCCcEEEEEE
Confidence            457889999999999999999999999999998876522113333222321 122    223323333334433333332


Q ss_pred             EEeCCC------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 047053          116 VLGGDH------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADL  182 (192)
Q Consensus       116 ileg~~------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~  182 (192)
                      .....+      ....+.+-+.+.|.   ++|...|.+.+....++--..+.-.+-.++......-+.+|++.
T Consensus       128 ~~~~~p~~~~~VR~~~~~~~~~i~p~---~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~  197 (199)
T d1jssa_         128 SVEWSETRPEFVRGYNHPCGWFCVPL---KDSPSQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKG  197 (199)
T ss_dssp             ECCCCCCCTTSEECEECSEEEEEEEE---TTEEEEEEEEEEECEECCSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCCCceEEEEEeeeeEEEEEc---CCCCCcEEEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            222222      22345577788887   34433699999998886433444433444454455555555554

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.017  Score=43.66  Aligned_cols=144  Identities=10%  Similarity=-0.050  Sum_probs=87.2

Q ss_pred             EEEEEcCChhhHhh-hhcCCCCCCccCcccceeEeecC-CCCCCeEEEEEeecCC-C---CceeEEEEEEEecCCceEEE
Q 047053           41 ITQKINTPLSFVWP-FVRDFTNPDKYKNFIRSCTMKVG-AGEVGSVRDVNIISGP-P---ATTSTERLEMLDDENHILSF  114 (192)
Q Consensus        41 v~~~I~apa~~VW~-~v~df~~~~~w~p~v~s~~~~eG-dG~vG~VR~~~~~~G~-p---~~~vkErL~~iD~~~~~~~Y  114 (192)
                      .+.+|++|+++|+. ++.|......|-+.+.++++++- +...-.+..+...... |   ...+.-|-...+++...+.+
T Consensus        56 ~~~~i~~~~~~v~~~~~~d~e~~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~~~~~~~  135 (214)
T d1em2a_          56 LKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSG  135 (214)
T ss_dssp             EEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHhChHHHHHHHHHHhheEEEEEcCCCceEEEEEecccCCCCCCCcEEEEEEEEEEcCCcEEEEE
Confidence            45689999999986 67788888999999999888764 3211122222221121 2   24555555555665555555


Q ss_pred             EEEeCCC--------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047053          115 RVLGGDH--------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAMAS  186 (192)
Q Consensus       115 ~ileg~~--------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae~~  186 (192)
                      ..+..+.        ....+.+.+.+.|..+ +.+  .|.+.|....|+---.+.-.+..++....-..+.+|++...++
T Consensus       136 ~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~-~~~--~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lrk~~~k~  212 (214)
T d1em2a_         136 IATSHSAKPPTHKYVRGENGPGGMIVLKSAS-NPR--VCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISEL  212 (214)
T ss_dssp             EECCCTTSCCCTTSEECEECSEEEEEEECSS-CTT--CEEEEEEECEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EeeccccccCCCCeEEEEEEeeeEEEEECCC-CCC--eEEEEEEEEeCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            4444331        1134556677778611 123  4999999988853223444444555666667788888888776


Q ss_pred             c
Q 047053          187 F  187 (192)
Q Consensus       187 ~  187 (192)
                      .
T Consensus       213 ~  213 (214)
T d1em2a_         213 G  213 (214)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.35  E-value=0.037  Score=40.99  Aligned_cols=125  Identities=10%  Similarity=0.088  Sum_probs=72.9

Q ss_pred             CChhhHhhhhc-CCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEe-CCCCcc
Q 047053           47 TPLSFVWPFVR-DFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPATTSTERLEMLDDENHILSFRVLG-GDHRLQ  124 (192)
Q Consensus        47 apa~~VW~~v~-df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~~~vkErL~~iD~~~~~~~Y~ile-g~~p~~  124 (192)
                      -..+++|.-+- .-.++..+.|.+.+|++++.++ -+-.|.+.|++    ..++|+++.. + ...+.|.+-. ++.  .
T Consensus        20 LTr~QlW~GL~lrar~p~~Fv~~l~~c~v~~~~~-~~~~Rel~fg~----~~v~e~Vtl~-~-~~~v~f~~~a~~~~--~   90 (151)
T d2ffsa1          20 LDRLQLWEGLVCRAREPQYFVVGLERFEILVDDG-DRLHRRLYLPG----LVVEDEVVLK-A-PDSAHYSIKPSAEV--A   90 (151)
T ss_dssp             CCHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECS-SEEEEEEEETT----EEEEEEEEEE-T-TTEEEEEECCCSSS--B
T ss_pred             cCHHHHHHHHHHhhcCHhhcccccceEEEEEecC-CeEEEEEEECC----ceeEEEEEEc-C-CcEEEEEcccccCC--C
Confidence            45679999863 5667899999999999976532 37899999964    4789998754 4 5668898765 222  2


Q ss_pred             eeEEEEEEEeeecCCCCeeEEEEEEEEEecCCC-CCCHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 047053          125 NYRSVTSVNDFISEETGEVYCVVLESYVVDIPE-GNSDDDTRLFVGTVV-KLNLARLADLAMA  185 (192)
Q Consensus       125 ~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~-g~~~~~~~~~l~~~~-~~~L~~L~~~ae~  185 (192)
                      .-+.++.+...   ++|.  =.+...++...|. .........+++..| .+-++.++.+.|+
T Consensus        91 g~~l~~~Ieep---~~g~--L~lrf~Ye~~~p~~~~~~~~~~e~~ksaY~~ad~dTvr~IRe~  148 (151)
T d2ffsa1          91 GGSLDMTIEEP---EPGS--LFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIRDR  148 (151)
T ss_dssp             EEEEEEEEEEE---ETTE--EEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEccC---CCCe--EEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            23344444332   3442  2222233222222 111122344566655 4455567666665

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.12  Score=38.27  Aligned_cols=137  Identities=10%  Similarity=0.016  Sum_probs=79.0

Q ss_pred             EEEEE-cCChhhHhhhhcCCCCCCccCcccceeEeecCCCCCCeEEEEEeecCCCC---ceeEE-EEEEEecCCceEEEE
Q 047053           41 ITQKI-NTPLSFVWPFVRDFTNPDKYKNFIRSCTMKVGAGEVGSVRDVNIISGPPA---TTSTE-RLEMLDDENHILSFR  115 (192)
Q Consensus        41 v~~~I-~apa~~VW~~v~df~~~~~w~p~v~s~~~~eGdG~vG~VR~~~~~~G~p~---~~vkE-rL~~iD~~~~~~~Y~  115 (192)
                      ++.+| ++|++.++.++.|...-+.|-+.+.++......+  -.+-.+.+....|.   ..+.. +...++++...+.+.
T Consensus        49 ~~~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~~~~~~~~~--~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~~~~~v~  126 (203)
T d1ln1a_          49 VFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNG--ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVI  126 (203)
T ss_dssp             EEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETT--EEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEE
T ss_pred             EEEEEcCCCHHHHHHHHcCHhHhhhhcccceEEEEEccCC--cEEEEEEcccccccCCceEEEEEEEEEccCCCCeEEEE
Confidence            34577 5999999999999888889999887764432222  12333344322332   22322 222333333323222


Q ss_pred             E---EeCC-C-------CcceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          116 V---LGGD-H-------RLQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       116 i---leg~-~-------p~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      +   .+-+ +       ....+.+.+.+.|.   +++  +|.+.+....++--..+.-.+-.+.....-..+++|++++.
T Consensus       127 ~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~---~~~--~t~v~~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~l~k~~~  201 (203)
T d1ln1a_         127 LARSTSMPQLGERSGVIRVKQYKQSLAIESD---GKK--GSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQ  201 (203)
T ss_dssp             EEEECCBTTBCCCTTSEEECCEEEEEEEEEC---SSS--SEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             EeecccCCcCcccCCccccceeeEEEEEEec---CCC--cEEEEEEEEcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2   1211 1       23467888889997   344  49999999888642234343444445556667777777764

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.94  E-value=3.6  Score=29.80  Aligned_cols=132  Identities=13%  Similarity=0.076  Sum_probs=73.6

Q ss_pred             EEEEcCChhhHhh-hhcCCCCCCccCcccceeEeecC--CCCCCeEEEEEeecCCCC---ceeEEEEEEEecCC--ceEE
Q 047053           42 TQKINTPLSFVWP-FVRDFTNPDKYKNFIRSCTMKVG--AGEVGSVRDVNIISGPPA---TTSTERLEMLDDEN--HILS  113 (192)
Q Consensus        42 ~~~I~apa~~VW~-~v~df~~~~~w~p~v~s~~~~eG--dG~vG~VR~~~~~~G~p~---~~vkErL~~iD~~~--~~~~  113 (192)
                      +.+|++++++|.. ++.+   .+.|-+.+..+++++-  ++  -.|-...+..-.|.   ..+.-+....+.++  ..+.
T Consensus        49 ~~~i~a~~~~vl~~~l~~---r~~Wd~~~~~~~~le~~~~~--~~i~y~~~~~p~pvs~RD~v~~~~~~~~~~~~~~~i~  123 (197)
T d2psoa1          49 SVEVEAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQ--TEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLV  123 (197)
T ss_dssp             EEEESSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETT--EEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEE
T ss_pred             EEEEcCCHHHHHHHHHHh---HHHHhhhhheEEEEEEcCCC--CEEEEEEccCCCcccceeEEEEEEEEEeCCCCEEEEE
Confidence            3678999988875 4544   5789998888887653  22  11222233321222   23433333344333  3334


Q ss_pred             EEEEeCCC-C------cceeEEEEEEEeeecCCCCeeEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 047053          114 FRVLGGDH-R------LQNYRSVTSVNDFISEETGEVYCVVLESYVVDIPEGNSDDDTRLFVGTVVKLNLARLADLAM  184 (192)
Q Consensus       114 Y~ileg~~-p------~~~y~ati~v~p~~~~~~g~~~T~v~W~~~~~~~~g~~~~~~~~~l~~~~~~~L~~L~~~ae  184 (192)
                      ..-++.+. |      ...+.+-+.+.|.   ++|  .|.+.+....|| -|....-+...........+.+|++..+
T Consensus       124 ~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~---~~~--~t~vt~~~~~Dp-~G~iP~W~~n~~~~~~~~~~~~lr~~f~  195 (197)
T d2psoa1         124 SLSVEHEEAQLLGGVRAVVMDSQYLIEPC---GSG--KSRLTHICRIDL-KGHSPEWYSKGFGHLCAAEVARIRNSFQ  195 (197)
T ss_dssp             EEECCCTTCCCCSSEECCEEEEEEEEEEC---STT--CEEEEEEEEECC-SSSCTTTTTTHHHHHHHHHHHHHHHTTS
T ss_pred             EEeccccCCCCCCcEEEEEEeccEEEEEC---CCC--cEEEEEEEEECC-CCcCchhHHhhhHHHHHHHHHHHHHhhh
Confidence            33344432 2      2456677778887   455  399999998885 4544443333335555566666666443