Citrus Sinensis ID: 047054

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MSETWTSVELPVLDISQPLSPSALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSLGEHFQKKFYESEFKNCHGYLRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCADYLKFRESSVEGKFEKVGFTVKDFAGN
cccccccccccEEEccccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccEEEEccccccccccccccccccccccccccEEEEEccccccEEEEEccccEEEcccccccEEEEHHHHHHHHHcccccccccEEEccccccEEEEEEEcccccccEEEccccccccccccccccccHHHHHHHHHHccccccccccccccccccc
cccccccccccEEEccccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccEEEEcccccccEEEEccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHccccccEEEEccccccccccccHHccccccccccEEEEEEccccccEEEEEEcccEEEccccccEEEEEcccHHHHHcccccccEEEEEEEEccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHcccccHcHHEEEHHHcccc
msetwtsvelpvldisqplspsaLSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNqlfdlpyesklkvgpssstktytphfiaspffesirvsgpeffasakatvdvlfdeppseLSETLKEYGNKLTELSKTIVKIVLTSLGEHFQKKFYEsefknchgylriinysppedvekneveglgmhtdmscITIVYQdqigglqvrskqgkwmninpcedtlIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFfwcfedekrifapdevvglgnlrrykpfvcaDYLKfressvegkfekvgFTVKDFAGN
msetwtsvelpvldisqplsPSALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSLGEHFQKKFYESEFKNCHGYLRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPdevvglgnlrryKPFVCADYLKFressvegkfekvgftvkdfagn
MSETWTSVELPVLDIsqplspsalsslsRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSLGEHFQKKFYESEFKNCHGYLRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCADYLKFRESSVEGKFEKVGFTVKDFAGN
**************************LSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKV******KTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFD*********LKEYGNKLTELSKTIVKIVLTSLGEHFQKKFYESEFKNCHGYLRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCADYLKFRESSVEGKFEKVGFTV******
****WTSVELPVLDISQPLSPSALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYES****************FIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSLGEHFQKKFYESEFKNCHGYLRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCADYLKFRESSVEGKFEKVGFTVKDFA**
MSETWTSVELPVLDISQPLSPSALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSLGEHFQKKFYESEFKNCHGYLRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCADYLKFRESSVEGKFEKVGFTVKDFAGN
*****TSVELPVLDISQPLSPSALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSLGEHFQKKFYESEFKNCHGYLRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCADYLKFRESSVEGKFEKVGFTVKDF*G*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSETWTSVELPVLDISQPLSPSALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSLGEHFQKKFYESEFKNCHGYLRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCADYLKFRESSVEGKFEKVGFTVKDFAGN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
Q9C899361 Feruloyl CoA ortho-hydrox no no 0.860 0.753 0.351 3e-31
O04705361 Gibberellin 20 oxidase 1- N/A no 0.898 0.786 0.321 4e-31
Q9C971355 Gibberellin 3-beta-dioxyg no no 0.882 0.785 0.304 6e-31
O04706365 Gibberellin 20 oxidase 1- N/A no 0.898 0.778 0.321 6e-31
Q9C6I4336 Gibberellin 2-beta-dioxyg no no 0.892 0.839 0.297 2e-30
O04707365 Gibberellin 20 oxidase 1- N/A no 0.898 0.778 0.311 9e-30
O49561338 Gibberellin 2-beta-dioxyg no no 0.768 0.718 0.321 1e-29
Q9LHN8361 Feruloyl CoA ortho-hydrox no no 0.873 0.764 0.326 8e-29
Q39103358 Gibberellin 3-beta-dioxyg no no 0.908 0.801 0.283 9e-28
Q39110377 Gibberellin 20 oxidase 1 no no 0.889 0.745 0.294 1e-27
>sp|Q9C899|F6H2_ARATH Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1 Back     alignment and function desciption
 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 158/304 (51%), Gaps = 32/304 (10%)

Query: 10  LPVLDISQPLSPSALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLK 69
           +PV+DIS     S   ++  A EEWGFF + NHGVS  +   + + +++ F LP E K K
Sbjct: 62  IPVIDISNLDEKSVSKAVCDAAEEWGFFQVINHGVSMEVLENMKTATHRFFGLPVEEKRK 121

Query: 70  VGPSSSTKT-------YTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETL 122
                S  T       ++PH  A    E        F + A+A+   L+  P S  SETL
Sbjct: 122 FSREKSLSTNVRFGTSFSPH--AEKALEWKDYLSLFFVSEAEASQ--LW--PDSCRSETL 175

Query: 123 KEYGNKLTELSKTIVKIVLTSLGEHFQ-KKFYESEFKNCHGYLRI-INYSP----PEDVE 176
            EY N+    +K +VK +L  LGE+   K+  +++     G  RI +NY P    PE   
Sbjct: 176 -EYMNE----TKPLVKKLLRFLGENLNVKELDKTKESFFMGSTRINLNYYPICPNPE--- 227

Query: 177 KNEVEGLGMHTDMSCITIVYQDQIGGLQVRS-KQGKWMNINPCEDTLIVNIGDLMHAWCN 235
                G+G H+D+S +TI+ QD+IGGL VRS   G+W+++ P   +L++NIGD M    N
Sbjct: 228 --LTVGVGRHSDVSSLTILLQDEIGGLHVRSLTTGRWVHVPPISGSLVINIGDAMQIMSN 285

Query: 236 GKLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCADYLK-- 293
           G+ +S EHRV+     NR+S+  F   + E  I    EV+  G    YK  +  DY+K  
Sbjct: 286 GRYKSVEHRVLANGSYNRISVPIFVSPKPESVIGPLLEVIENGEKPVYKDILYTDYVKHF 345

Query: 294 FRES 297
           FR++
Sbjct: 346 FRKA 349
2-oxoglutarate (OG)- and Fe(II)-dependent dioxygenase (2OGD)involved in scopoletin biosynthesis. Converts feruloyl CoA into 6'-hydroxyferuloyl CoA but has no activity with ferulic acid, feruloylquinic acid, caffeic acid, caffeoyl CoA, p-coumaric acid, cinnamic acid, cinnamoyl CoA or benzoyl CoA.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|Q9C971|G3OX4_ARATH Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|Q9C6I4|G2OX7_ARATH Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description
>sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2 Back     alignment and function description
>sp|Q9LHN8|F6H1_ARATH Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1 Back     alignment and function description
>sp|Q39103|G3OX1_ARATH Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2 Back     alignment and function description
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
225454236328 PREDICTED: gibberellin 20 oxidase 1-B [V 0.993 0.957 0.734 1e-134
224074939320 2-oxoglutarate-dependent dioxygenase [Po 0.996 0.984 0.698 1e-131
224067894316 2-oxoglutarate-dependent dioxygenase [Po 0.974 0.974 0.718 1e-131
255537487320 gibberellin 20-oxidase, putative [Ricinu 0.987 0.975 0.692 1e-131
225426432339 PREDICTED: gibberellin 3-beta-dioxygenas 0.996 0.929 0.695 1e-130
297742515321 unnamed protein product [Vitis vinifera] 0.996 0.981 0.695 1e-130
255541592317 gibberellin 20-oxidase, putative [Ricinu 0.977 0.974 0.706 1e-127
255539839318 gibberellin 20-oxidase, putative [Ricinu 0.987 0.981 0.735 1e-127
359490626324 PREDICTED: gibberellin 20 oxidase 1-B-li 0.990 0.966 0.710 1e-126
356506224319 PREDICTED: gibberellin 3-beta-dioxygenas 0.993 0.984 0.673 1e-124
>gi|225454236|ref|XP_002274751.1| PREDICTED: gibberellin 20 oxidase 1-B [Vitis vinifera] gi|147834194|emb|CAN75307.1| hypothetical protein VITISV_040404 [Vitis vinifera] gi|297745296|emb|CBI40376.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/316 (73%), Positives = 271/316 (85%), Gaps = 2/316 (0%)

Query: 1   MSET-WTSVELPVLDISQPLSPSALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQL 59
           MSE+   SVELPVLDISQPL P++L SL+ AC+EWGFF+IT+HG++K LY RL  LS  L
Sbjct: 1   MSESDQNSVELPVLDISQPLQPASLLSLAEACKEWGFFHITSHGITKDLYGRLCLLSKSL 60

Query: 60  FDLPYESKLKVGPSSSTKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELS 119
           F LP ++KLK+GP SS KTYTPHFIASPFFES+RVSGP+FF SA+++ DVLFD+  SE S
Sbjct: 61  FSLPSDTKLKLGPFSSLKTYTPHFIASPFFESLRVSGPDFFVSAQSSADVLFDKQNSEFS 120

Query: 120 ETLKEYGNKLTELSKTIVKIVLTSLGEHFQKKFYESEFKNCHGYLRIINYSPPEDVEKNE 179
           E L+EYG K+TELSK I++IVL SLGE F KK+YE+EF  CHGYLRIINYSPP+D  K E
Sbjct: 121 EVLQEYGKKMTELSKRIMEIVLMSLGEGFVKKYYEAEFNGCHGYLRIINYSPPDDF-KEE 179

Query: 180 VEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLR 239
           VEGLGMHTDMSC+T+VY D+IGGLQVRS++GKWM+I+PCE TL+VNIGD++ AW NGKLR
Sbjct: 180 VEGLGMHTDMSCVTVVYPDEIGGLQVRSREGKWMDISPCEGTLVVNIGDMLQAWSNGKLR 239

Query: 240 SSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCADYLKFRESSV 299
           SSEHRVVLK+ VNR SLAFFWCFEDEK I APDEV+G GN R YKPFVC DY+KFRESS 
Sbjct: 240 SSEHRVVLKKPVNRFSLAFFWCFEDEKVILAPDEVIGEGNTRMYKPFVCLDYVKFRESSE 299

Query: 300 EGKFEKVGFTVKDFAG 315
           +GKFEKVGFTVKDFAG
Sbjct: 300 KGKFEKVGFTVKDFAG 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224074939|ref|XP_002304499.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222841931|gb|EEE79478.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224067894|ref|XP_002302586.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222844312|gb|EEE81859.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255537487|ref|XP_002509810.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223549709|gb|EEF51197.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225426432|ref|XP_002270279.1| PREDICTED: gibberellin 3-beta-dioxygenase 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742515|emb|CBI34664.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255541592|ref|XP_002511860.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223549040|gb|EEF50529.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255539839|ref|XP_002510984.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223550099|gb|EEF51586.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359490626|ref|XP_002271841.2| PREDICTED: gibberellin 20 oxidase 1-B-like [Vitis vinifera] gi|302143842|emb|CBI22703.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356506224|ref|XP_003521887.1| PREDICTED: gibberellin 3-beta-dioxygenase 4-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
TAIR|locus:2121671324 AT4G23340 [Arabidopsis thalian 0.984 0.959 0.623 1.7e-107
TAIR|locus:2035671361 AT1G55290 [Arabidopsis thalian 0.898 0.786 0.342 2.3e-32
TAIR|locus:2011506317 AT1G52820 [Arabidopsis thalian 0.825 0.823 0.289 2e-31
TAIR|locus:2127403338 GA2OX8 "gibberellin 2-oxidase 0.886 0.828 0.320 6.2e-30
TAIR|locus:2036386336 GA2OX7 "gibberellin 2-oxidase 0.841 0.791 0.306 7.9e-30
TAIR|locus:2086789361 AT3G13610 [Arabidopsis thalian 0.908 0.795 0.323 7.1e-29
TAIR|locus:2034195355 GA3OX4 "gibberellin 3-oxidase 0.886 0.788 0.305 1.5e-28
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.841 0.730 0.300 3.9e-28
TAIR|locus:2005511377 GA20OX1 [Arabidopsis thaliana 0.829 0.694 0.289 1.7e-27
TAIR|locus:2085879349 AT3G19010 [Arabidopsis thalian 0.882 0.799 0.294 2.2e-27
TAIR|locus:2121671 AT4G23340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 199/319 (62%), Positives = 248/319 (77%)

Query:     1 MSETWTSVELPVLDIXXXXXXXXXXXXXRACEEWGFFYITNHGVSKHLYRRLHSLSNQLF 60
             MSE  +S++LPVLD+              AC+EWGFFY+TNHG+SK ++ ++ SLS  +F
Sbjct:     1 MSELHSSLQLPVLDLTQPIESSILSSLSEACKEWGFFYVTNHGISKEMFSKICSLSRDVF 60

Query:    61 DLPYESKLKVGPSSSTKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLF-DEPPSELS 119
               P ESKLK+GP S    YTP +IASP+FES+ VSGP+F  SAKA+ DVLF D    EL 
Sbjct:    61 KAPLESKLKLGPIS----YTPRYIASPYFESLVVSGPDFSDSAKASADVLFQDHHKPELR 116

Query:   120 ETLKEYGNKLTELSKTIVKIVLT-SLGEHFQKKFYESEFKNCHGYLRIINYSPPEDVEKN 178
             ET++EYG K+ ELSK ++KI+L  +LG+   K+ Y+++F NCHGYLR++NY+PP DVEK 
Sbjct:   117 ETMQEYGAKMAELSKRLIKILLMMTLGDETGKRLYQTDFSNCHGYLRLVNYTPPHDVEKQ 176

Query:   179 E--VEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNG 236
             E  VEGLGMHTDMSCITIVYQD +GGLQ+RSK+GKW++INPC D L+VNIGDLM AW NG
Sbjct:   177 EELVEGLGMHTDMSCITIVYQDSVGGLQMRSKEGKWIDINPCNDFLVVNIGDLMQAWSNG 236

Query:   237 KLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCADYLKFRE 296
             +LRSSEHRVVL++ VNR+SLAFF CFEDEK I AP E+VG G  R YK F C++YLKFR+
Sbjct:   237 RLRSSEHRVVLRKLVNRVSLAFFLCFEDEKVILAPQEIVGEGKQRSYKSFKCSEYLKFRQ 296

Query:   297 SSVEGKFEKVGFTVKDFAG 315
             S+ EGKFEK+GFTVKDFAG
Sbjct:   297 SNEEGKFEKIGFTVKDFAG 315
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA;ISS
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2035671 AT1G55290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011506 AT1G52820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127403 GA2OX8 "gibberellin 2-oxidase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036386 GA2OX7 "gibberellin 2-oxidase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086789 AT3G13610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034195 GA3OX4 "gibberellin 3-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005511 GA20OX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085879 AT3G19010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-51
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 5e-48
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 4e-41
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 1e-40
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-37
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-36
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 8e-35
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 9e-34
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-33
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 3e-33
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 7e-33
PLN02216357 PLN02216, PLN02216, protein SRG1 8e-32
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-29
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-28
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-27
PLN02947374 PLN02947, PLN02947, oxidoreductase 6e-27
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-26
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-24
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-24
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 4e-24
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 7e-24
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 8e-24
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-21
PLN02997325 PLN02997, PLN02997, flavonol synthase 6e-20
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 2e-19
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-19
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 3e-16
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 8e-07
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information 
 Score =  172 bits (438), Expect = 1e-51
 Identities = 83/274 (30%), Positives = 122/274 (44%), Gaps = 32/274 (11%)

Query: 9   ELPVLDIS---QPLSP---SALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDL 62
           +LP++D+S                L  AC E GFFY+ NHG+   L     +L+ Q F L
Sbjct: 5   DLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFAL 64

Query: 63  PYESKLKV----GPSSSTKTYTPHFIA--------SPFF---ESIRVSGPEFFASAKATV 107
           P E KLK+    G       YTPH                    +        A      
Sbjct: 65  PVEEKLKILMVLGRQHRG--YTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHG 122

Query: 108 DVLFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSLG--EHFQKKFYESEFKNCHGYLR 165
             L+   P  L + L +Y   +T +   +++ +   L   E F  K       N    LR
Sbjct: 123 PNLWPAIP-GLRDALLQYYRAMTAVGLRLLRAIALGLDLPEDFFDKRTSDP--NSV--LR 177

Query: 166 IINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVN 225
           ++ Y      E    +G+G HTD   +T+++QD +GGL+VR   G W+++ P   TL+VN
Sbjct: 178 LLRYPSRPAREG--ADGVGAHTDYGLLTLLFQDDVGGLEVRPPNGGWLDVPPIPGTLVVN 235

Query: 226 IGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFF 259
           IGD++  W NG+LRS+ HRV     V+R S+ FF
Sbjct: 236 IGDMLERWTNGRLRSTVHRVRNPPGVDRYSIPFF 269

Length = 322
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216357 protein SRG1 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN02704335 flavonol synthase 100.0
PLN02947374 oxidoreductase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.82
PLN03176120 flavanone-3-hydroxylase; Provisional 99.72
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.92
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.94
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.91
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 94.02
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=5.2e-71  Score=509.61  Aligned_cols=293  Identities=24%  Similarity=0.420  Sum_probs=247.3

Q ss_pred             CCCCCceEeCCCCCChHHHHHHHHHHHhccEEEEEeCCCCHHHHHHHHHHHHhhcCCChhhhhccCCCCCCCCcccCcCC
Q 047054            6 TSVELPVLDISQPLSPSALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIA   85 (316)
Q Consensus         6 ~~~~iPvIDls~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~Gy~~~~~~   85 (316)
                      ...+||+|||+...+..++++|++||+++|||||+||||+.++++++++.+++||+||.|+|+++......+||.+...+
T Consensus        11 ~~~~iP~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~GY~~~~~e   90 (332)
T PLN03002         11 KVSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLDE   90 (332)
T ss_pred             CCCCCCEEeCCchhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCCcCccccc
Confidence            45689999999765556789999999999999999999999999999999999999999999999765567899865432


Q ss_pred             ---------CCccccccccCC---C-cccccccccccCCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcch
Q 047054           86 ---------SPFFESIRVSGP---E-FFASAKATVDVLFDEP--PSELSETLKEYGNKLTELSKTIVKIVLTSLGEHFQK  150 (316)
Q Consensus        86 ---------~~~~e~~~~~~~---~-~~~~~~~~~~~~~p~~--~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lg~~~~~  150 (316)
                               .+++|.+.+...   + ..........+.||..  .|+||+.+++|+++|.+|+..|+++||++||  +++
T Consensus        91 ~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lg--l~~  168 (332)
T PLN03002         91 KLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALD--LDV  168 (332)
T ss_pred             ccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCh
Confidence                     245666654311   1 0000011236789974  6899999999999999999999999999999  568


Q ss_pred             hhhhh--hhcCccceeeecccCCCCCCCccccCcccccCCCCCeEEEEeCCCCceeEEcc----CCCeEEecCCCCeEEE
Q 047054          151 KFYES--EFKNCHGYLRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSK----QGKWMNINPCEDTLIV  224 (316)
Q Consensus       151 ~~~~~--~~~~~~~~lrl~~Y~p~~~~~~~~~~~~~~HtD~~~lTlL~qd~~~GLqv~~~----~g~W~~v~p~~g~~vv  224 (316)
                      ++|.+  .+..+.+.||++|||| ++......+|+++|||+|+||||+||+++||||+..    +|+|++|+|.||++||
T Consensus       169 ~~f~~~~~~~~~~~~lrl~~YP~-~~~~~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VV  247 (332)
T PLN03002        169 GYFDRTEMLGKPIATMRLLRYQG-ISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIV  247 (332)
T ss_pred             HHhccccccCCCchheeeeeCCC-CCCcccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEECCCCCCeEEE
Confidence            88875  4455567899999965 433233578999999999999999999999999854    3689999999999999


Q ss_pred             EcchhhHHHhCCcccCCCCeeecCCCCceEEEEEcccCCCCceEeCCcccccCCCCCCCCCccHHHHHHHHHhhccCc
Q 047054          225 NIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYKPFVCADYLKFRESSVEGK  302 (316)
Q Consensus       225 n~Gd~l~~~TnG~~~s~~HRV~~~~~~~R~Si~~F~~p~~d~~i~p~~~~~~~~~~~~y~~~~~~e~~~~~~~~~~~~  302 (316)
                      |+||+||+||||+||||+|||+.++ .+||||+||++|+.|++|.|+++++++++|.+|+|++++||+..+++..+..
T Consensus       248 NiGD~L~~wTng~~kSt~HRVv~~~-~~R~Sia~F~~p~~d~~i~pl~~~~~~~~p~~y~~~~~~e~l~~~~~~~~~~  324 (332)
T PLN03002        248 NLGDMLERWSNGFFKSTLHRVLGNG-QERYSIPFFVEPNHDCLVECLPTCKSESDLPKYPPIKCSTYLTQRYEETHAK  324 (332)
T ss_pred             EHHHHHHHHhCCeeECcCCeecCCC-CCeeEEEEEecCCCCeeEecCCcccCCCCcccCCCccHHHHHHHHHHHHhhh
Confidence            9999999999999999999999875 6899999999999999999999999999999999999999999998876643

>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-19
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 3e-17
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-15
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-15
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-14
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 6e-11
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 2e-05
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 2e-05
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 131/281 (46%), Gaps = 35/281 (12%)
Query: 30  ACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSSSTKTYTPHFIASPFF 89
           ACE WGFF + NHG+ + +   +   +   +    E + K              +AS   
Sbjct: 27  ACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFK------------ELVASKAL 74
Query: 90  ESIRVSGPE------FFASAKATVDVLFDEPPS---ELSETLKEYGNKLTELSKTIVKIV 140
           E ++    +      FF       ++   E P    E  E  +++  +L +L++ ++ ++
Sbjct: 75  EGVQAEVTDXDWESTFFLKHLPISNI--SEVPDLDEEYREVXRDFAKRLEKLAEELLDLL 132
Query: 141 LTSLGEHFQKKFYESEFKNCHGY---LRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQ 197
             +LG   +K + ++ F    G     ++ NY P    + + ++GL  HTD   I +++Q
Sbjct: 133 CENLG--LEKGYLKNAFYGSKGPNFGTKVSNYPPCP--KPDLIKGLRAHTDAGGIILLFQ 188
Query: 198 D-QIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSL 256
           D ++ GLQ+  K G+W+++ P   +++VN+GD +    NGK +S  HRV+ ++   R SL
Sbjct: 189 DDKVSGLQLL-KDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSL 247
Query: 257 AFFWCFEDEKRIFAPDEVV---GLGNLRRYKPFVCADYLKF 294
           A F+    +  I+    +V      N + Y  FV  DY K 
Sbjct: 248 ASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKL 288
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-69
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 7e-68
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 4e-67
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-66
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-66
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-65
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
 Score =  218 bits (558), Expect = 1e-69
 Identities = 63/329 (19%), Positives = 105/329 (31%), Gaps = 43/329 (13%)

Query: 1   MSETWTSVELPVLDISQPLSPS------ALSSLSRACEEWGFFYITNHGVSKHLYRRLHS 54
           M    +   +P +D+S                +  A  + GFFY  NHG++     +   
Sbjct: 1   MGSV-SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTK 59

Query: 55  LSNQLFDLPYESKLKVGPSSSTKTYTPHFIAS--------PFFESIRVSGPEFFASAKAT 106
                  +  E K  +   +  K +     A            ES     P F       
Sbjct: 60  --EFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRI 117

Query: 107 VDVLFDEPPS---------ELSETLKEYGNKLTELSKTIVKIVLTSLG---EHFQKKFYE 154
                    +            +  ++Y   +  LS  ++K    +LG     F + F  
Sbjct: 118 QAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHF-- 175

Query: 155 SEFKNCHGYLRIINYSP----PEDVEKNEVE----GLGMHTDMSCITIVYQDQIGGLQVR 206
            +  +    + +I Y      PE   K   +        H D+S IT++YQ  +  LQV 
Sbjct: 176 -KPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVE 234

Query: 207 SKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWCFEDEK 266
           +  G + +I   +   ++N G  M    N   ++  HRV       R SL FF     + 
Sbjct: 235 TAAG-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVK-WVNAERQSLPFFVNLGYDS 292

Query: 267 RIFAPDEVVGLGNLRRYKPFVCADYLKFR 295
            I   D           +P    DYL+  
Sbjct: 293 VIDPFDPREP-NGKSDREPLSYGDYLQNG 320
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.14
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 88.97
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 88.22
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 85.98
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 85.21
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=5.4e-73  Score=519.26  Aligned_cols=289  Identities=21%  Similarity=0.352  Sum_probs=247.7

Q ss_pred             CCCCCceEeCCCCC--ChHHHHHHHHHHHhccEEEEEeCCCCHHHHHHHHHHHHhhcCCChhhhhccCC-CCCCCCcccC
Q 047054            6 TSVELPVLDISQPL--SPSALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGP-SSSTKTYTPH   82 (316)
Q Consensus         6 ~~~~iPvIDls~~~--~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~-~~~~~Gy~~~   82 (316)
                      +..+||||||+.+.  +.+++++|++||+++|||||+||||+.++++++++.+++||+||.|+|+++.. ....+||.+.
T Consensus         3 ~~~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~   82 (312)
T 3oox_A            3 STSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPF   82 (312)
T ss_dssp             -CCSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEECC
T ss_pred             CCCCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCccccccc
Confidence            35789999999763  34578999999999999999999999999999999999999999999999975 3457899765


Q ss_pred             cCC-------CCccccccccCCCc--ccccccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhhh
Q 047054           83 FIA-------SPFFESIRVSGPEF--FASAKATVDVLFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSLGEHFQKKFY  153 (316)
Q Consensus        83 ~~~-------~~~~e~~~~~~~~~--~~~~~~~~~~~~p~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lg~~~~~~~~  153 (316)
                      +.+       .+++|.+.+.....  ........++.||+.+|+||+.+++|+++|.+++..|+++|+++||  +++++|
T Consensus        83 g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lg--l~~~~f  160 (312)
T 3oox_A           83 GVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLK--LERDFF  160 (312)
T ss_dssp             CCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCTTTT
T ss_pred             cceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cCHHHH
Confidence            533       24566665532110  0001123467899999999999999999999999999999999999  568899


Q ss_pred             hhhhcCccceeeecccCCCCCCCccccCcccccCCCCCeEEEEeCCCCceeEEccCCCeEEecCCCCeEEEEcchhhHHH
Q 047054          154 ESEFKNCHGYLRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAW  233 (316)
Q Consensus       154 ~~~~~~~~~~lrl~~Y~p~~~~~~~~~~~~~~HtD~~~lTlL~qd~~~GLqv~~~~g~W~~v~p~~g~~vvn~Gd~l~~~  233 (316)
                      .+.+..+.+.||++|||| ++.... .+|+++|||+|+||||+||+++||||++++|+|++|+|++|++|||+||+||+|
T Consensus       161 ~~~~~~~~~~lr~~~Ypp-~~~~~~-~~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W~~V~p~pg~~vVNiGD~l~~~  238 (312)
T 3oox_A          161 KPTVQDGNSVLRLLHYPP-IPKDAT-GVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDMLERL  238 (312)
T ss_dssp             HHHHTTCCCEEEEEEECC-CSSCCC---CEEEECCCSSEEEEECCTTSCEEEECTTSCEEECCCCSSCEEEEECHHHHHH
T ss_pred             HHHhcCCcceeeeEecCC-CCCCcC-CcCccceecCceEEEEeEcCcCceEEECCCCcEEECCCCCCeEEEEhHHHHHHH
Confidence            999988888999999955 433233 389999999999999999999999999899999999999999999999999999


Q ss_pred             hCCcccCCCCeeecCC----CCceEEEEEcccCCCCceEeCCcccccCCCCCCCC-CccHHHHHHHHHhh
Q 047054          234 CNGKLRSSEHRVVLKR----CVNRLSLAFFWCFEDEKRIFAPDEVVGLGNLRRYK-PFVCADYLKFRESS  298 (316)
Q Consensus       234 TnG~~~s~~HRV~~~~----~~~R~Si~~F~~p~~d~~i~p~~~~~~~~~~~~y~-~~~~~e~~~~~~~~  298 (316)
                      |||+|||++|||+.++    ..+||||+||++|+.|++|.|+++++++++|++|+ ++|++||+..|++.
T Consensus       239 TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~~  308 (312)
T 3oox_A          239 TNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLRE  308 (312)
T ss_dssp             TTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHHH
T ss_pred             hCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCCCCcccCCCCeeHHHHHHHHHHH
Confidence            9999999999998763    46799999999999999999999999999999999 99999999999874
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 7e-51
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 9e-49
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-48
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-32
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  168 bits (426), Expect = 7e-51
 Identities = 61/294 (20%), Positives = 126/294 (42%), Gaps = 12/294 (4%)

Query: 10  LPVLDISQPLSP---SALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYES 66
            P++ + +       + +  +  ACE WGFF + NHG+ + +   +  ++   +    E 
Sbjct: 3   FPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQ 62

Query: 67  KLKVGPSSSTKTYTPHFIASPFFESIRVSGPEFFASAKATVDVLFDEPPSELSETLKEYG 126
           + K   +S         +    +ES         ++          +   E  E ++++ 
Sbjct: 63  RFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISE-----VPDLDEEYREVMRDFA 117

Query: 127 NKLTELSKTIVKIVLTSLGEHFQKKFYESEFKNCHGYLRIINYSPPEDVEKNEVEGLGMH 186
            +L +L++ ++ ++  +LG                 +   ++  PP   + + ++GL  H
Sbjct: 118 KRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCP-KPDLIKGLRAH 176

Query: 187 TDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGDLMHAWCNGKLRSSEHRVV 246
           TD   I +++QD         K G+W+++ P   +++VN+GD +    NGK +S  HRV+
Sbjct: 177 TDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVI 236

Query: 247 LKRCVNRLSLAFFWCFEDEKRIFAPDEVV---GLGNLRRYKPFVCADYLKFRES 297
            ++   R+SLA F+    +  I+    +V      N + Y  FV  DY+K    
Sbjct: 237 AQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAG 290
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 90.63
d2csga1417 Hypothetical protein YbiU {Salmonella typhimurium 88.44
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.7e-68  Score=490.84  Aligned_cols=285  Identities=23%  Similarity=0.379  Sum_probs=236.3

Q ss_pred             CCCCCCceEeCCCCCCh------HHHHHHHHHHHhccEEEEEeCCCCHHHHHHHHHHHHhhcCCChhhhhccCCCC---C
Q 047054            5 WTSVELPVLDISQPLSP------SALSSLSRACEEWGFFYITNHGVSKHLYRRLHSLSNQLFDLPYESKLKVGPSS---S   75 (316)
Q Consensus         5 ~~~~~iPvIDls~~~~~------~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~   75 (316)
                      .+..+||||||+.+..+      +++++|++||+++|||||+||||+.+++++++++++.||+||.|+|+++....   .
T Consensus        41 ~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~  120 (349)
T d1gp6a_          41 EDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK  120 (349)
T ss_dssp             CCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTB
T ss_pred             CCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCC
Confidence            45678999999998532      46789999999999999999999999999999999999999999999996533   2


Q ss_pred             CCCcccCcCCCCccccccccCCCcc----cccccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchh
Q 047054           76 TKTYTPHFIASPFFESIRVSGPEFF----ASAKATVDVLFDEPPSELSETLKEYGNKLTELSKTIVKIVLTSLGEHFQKK  151 (316)
Q Consensus        76 ~~Gy~~~~~~~~~~e~~~~~~~~~~----~~~~~~~~~~~p~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lg~~~~~~  151 (316)
                      +.||........   .......+..    ........+.||+..+.|++.+++|+++|.+++.+|+++++.+||  ++++
T Consensus       121 ~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lg--l~~~  195 (349)
T d1gp6a_         121 IQGYGSKLANNA---SGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG--LEPD  195 (349)
T ss_dssp             CSEEECCCCCST---TCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCTT
T ss_pred             cccccccccccc---ccccchhhhhcccccccccccccccccccchHHHHHHHHHHHHHHHHHhhhHHHHHHcC--CCHH
Confidence            233322211100   0000111100    001223457899999999999999999999999999999999999  5678


Q ss_pred             hhhhhhc---CccceeeecccCCCCCCCccccCcccccCCCCCeEEEEeCCCCceeEEccCCCeEEecCCCCeEEEEcch
Q 047054          152 FYESEFK---NCHGYLRIINYSPPEDVEKNEVEGLGMHTDMSCITIVYQDQIGGLQVRSKQGKWMNINPCEDTLIVNIGD  228 (316)
Q Consensus       152 ~~~~~~~---~~~~~lrl~~Y~p~~~~~~~~~~~~~~HtD~~~lTlL~qd~~~GLqv~~~~g~W~~v~p~~g~~vvn~Gd  228 (316)
                      +|.+.+.   ...+.||++||+ +++. .....|+++|||+|+||||+|+.++||||+ ++|+|++|+|.+|++|||+||
T Consensus       196 ~~~~~~~~~~~~~~~lrl~~Yp-~~~~-~~~~~g~~~HtD~g~lTlL~q~~~~GLqv~-~~g~W~~V~p~~~a~vVNvGD  272 (349)
T d1gp6a_         196 RLEKEVGGLEELLLQMKINYYP-KCPQ-PELALGVEAHTDVSALTFILHNMVPGLQLF-YEGKWVTAKCVPDSIVMHIGD  272 (349)
T ss_dssp             HHHHHTTHHHHCEEEEEEEEEC-CCSS-TTTCCSEEEECCCSSEEEEEECSCCCEEEE-ETTEEEECCCCTTCEEEEECH
T ss_pred             HHHHHhccccccceeeeecccc-cccc-hhhccccccCCCCcceEEEeccCCcceeee-cCCceEEccCCCCCeeeeHHh
Confidence            8877763   345679998885 4443 566789999999999999999999999998 789999999999999999999


Q ss_pred             hhHHHhCCcccCCCCeeecCCCCceEEEEEcccCCCCceE-eCCcccccCCCCCCCCCccHHHHHHHHHh
Q 047054          229 LMHAWCNGKLRSSEHRVVLKRCVNRLSLAFFWCFEDEKRI-FAPDEVVGLGNLRRYKPFVCADYLKFRES  297 (316)
Q Consensus       229 ~l~~~TnG~~~s~~HRV~~~~~~~R~Si~~F~~p~~d~~i-~p~~~~~~~~~~~~y~~~~~~e~~~~~~~  297 (316)
                      +||+||||+||||+|||+.++..+||||+||++|+.|++| .|+++++++++|++|+|+|++||++.|+.
T Consensus       273 ~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~~~p~~y~~~t~~e~~~~rl~  342 (349)
T d1gp6a_         273 TLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLF  342 (349)
T ss_dssp             HHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHH
T ss_pred             HHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCCCCCCCCCCccHHHHHHHHHh
Confidence            9999999999999999999888999999999999999865 89999999999999999999999999874
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure