Citrus Sinensis ID: 047073

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MAISRFLKMKSCITRSKFQAKEAAKEEDGVLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTKEFVI
Secondary Structure (PSIPRED)
ccccccccccccHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHHcccHHHHHHHHcccHHHHHHcccHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccEEEEcccccEEEEEEEcccccEEEEEccccccEEEcccccccccccEEEEEEEEcccccEEEEEEEEEEccccccccccEEEEEEcccccEEEccccccccccccccEEEcccEEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccEEEEEEEccEEEEEEcccccEEEEEEEEEccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccEEEEEEEccEEEEccccccccccccccccEEEEEEccEEEEEEEEcccccEEEEEccccccEEEEcccccccccEEEEEEEEccccccEEEEEEEEEccccccccccEEEEEEEEccccEEEEEccccccccccccEEEccEEEEEEEEcccccEEEEEEEccccccccccccccccccccccEEEEEEEEcccEEEEEEEccccEEEEEEEEccccccEEEEEEEc
Coil and Loop (DISEMBL)
MAISRFLKMKSCITRSKFQAKEAAkeedgvlatnynvsmedlplpilvdvfsrlpiktILQIKCVCKtwhslcsdpyfakihlarapFSIMILEKFCKRIytnslvplftlnqgdkERLSLLSScngliclhefsykqdiisvcnpilgdhlvlpqlkrknvatrirgfgynhctnQYKVIQILSYkdqaaissskpqvevhtigtntwrnigdlpyvlnqpyygaFLNSALHWYAHSHDKRTAFMCsfdlgdeqfrqfpgpptreyekcrpinsisvgvSGGFLylcdgflepnlDIWIMKKygvkeswtkefvi
Flexible Loop (DISEMBL)
maisrflkmkscitrskfqakeaakeedgvLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTKEFVI
Low Complexity Region (SEG)
MAISRFLKMKSCITRSKFQAKEAAKEEDGVLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTKEFVI
Disordered region (IsUnstruct)
****************************GVLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTKE***
Disordered Region (DISOPRED)
******************************************PLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTKEFVI
Disordered Region (DISEMBL)
MAISRFLKMKSCITRSK*********EDGVLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQ***********VHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTKEFVI
Disordered Region (DISPRO)
*****************FQAKEAAKEED**********MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTKEFVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAISRFLKMKSCITRSKFQAKEAAKEEDGVLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTKEFVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9SFC7	417	F-box protein At3g07870 O	yes	no	0.813	0.616	0.289	1e-26
Q8GXC7	427	F-box/kelch-repeat protei	no	no	0.813	0.601	0.267	2e-22
Q9SU30	413	F-box protein CPR30 OS=Ar	no	no	0.857	0.656	0.267	3e-19
Q9LIR8	364	F-box/kelch-repeat protei	no	no	0.832	0.722	0.243	5e-18
Q9LUP5	388	F-box/kelch-repeat protei	no	no	0.696	0.567	0.252	9e-14
Q9SVX4	404	F-box protein At3g57590 O	no	no	0.670	0.524	0.270	3e-13
Q9LUJ6	383	Putative F-box protein At	no	no	0.819	0.676	0.251	3e-13
Q0WQM8	444	F-box protein At1g53790 O	no	no	0.712	0.506	0.253	7e-13
Q9M1A7	521	F-box/kelch-repeat protei	no	no	0.787	0.477	0.257	4e-12
Q9LU24	360	Putative F-box protein At	no	no	0.787	0.691	0.243	5e-12

>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 148/325 (45%), Gaps = 68/325 (20%)

Query: 39  MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSL----------------------CSDP 76
           +E LP  I+ D+FSRLPI +I ++  VC++W S+                      C  P
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLLLHCDSP 84

Query: 77  YFAKIHLARAPFSIMILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSY 136
               +H        + L +  KRI T      F  +  +     ++ SCNGL+CL +  Y
Sbjct: 85  IRNGLHF-------LDLSEEEKRIKTKKFTLRFASSMPE---FDVVGSCNGLLCLSDSLY 134

Query: 137 KQDIISVCNPILGDHLVLPQLKRK-NVATRIRGFGYNHCTNQYKVIQILS---------- 185
             D + + NP   + L LP+   K +    + GFG++  T +YKV++I+           
Sbjct: 135 -NDSLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNG 193

Query: 186 -YKDQAAISSSKPQVEVHTIGTNT------WRNIGDLPYVLNQPYYGAFLNSALHWYA-- 236
            Y+ +  I   + +V++ T+ + T      WR++G  PY   +    A +N  LH+    
Sbjct: 194 IYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRP 253

Query: 237 --HSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSIS---VGVSGGFLYLCDGF 291
             H  D++     SFDL DE+F++ P P       C  +N  +   V + G    +  G 
Sbjct: 254 RRHVPDRK---FVSFDLEDEEFKEIPKP------DCGGLNRTNHRLVNLKGCLCAVVYGN 304

Query: 292 LEPNLDIWIMKKYGVKESWTKEFVI 316
               LDIW+MK YGVKESW KE+ I
Sbjct: 305 Y-GKLDIWVMKTYGVKESWGKEYSI 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 141/333 (42%), Gaps = 76/333 (22%)

Query: 42  LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIH------------------- 82
           LP  I+ ++  RLP K+I + +CV K + +L SDP FAKIH                   
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 83  ----------------------------LARAP--FSIMILEKFCKRIYTNSLVPLFTLN 112
                                       L   P  FS MI       +Y +  V +  LN
Sbjct: 96  SSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRV-MLKLN 154

Query: 113 QGDKER--LSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQ--------LKRKNV 162
                R  + ++ S NGL+C+   S  +  + + NP  GD   LP+         +R N 
Sbjct: 155 AKSYRRNWVEIVGSSNGLVCI---SPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNF 211

Query: 163 ATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQP 222
            T   GFG++  T+ YK+++++      A S       V+++  ++WR I +L Y  N  
Sbjct: 212 QTY--GFGFDGLTDDYKLVKLV------ATSEDILDASVYSLKADSWRRICNLNYEHNDG 263

Query: 223 YY--GAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKC-RPINSISVG 279
            Y  G   N A+HW           + +FD+  E+FR+ P P   E E C    ++  VG
Sbjct: 264 SYTSGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPD--EAEDCSHRFSNFVVG 321

Query: 280 VSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTK 312
              G L + +   + + DIW+M +YG  +SW++
Sbjct: 322 SLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSR 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 147/310 (47%), Gaps = 39/310 (12%)

Query: 39  MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFS---IMILEK 95
           M  +P+ I+ D+F RLP KT+++ + + K  + L +DP F + HL R   +   +MIL +
Sbjct: 1   MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query: 96  FCKRIYTNSLVPLFTLNQGDKER-----LSLLSSCNGLICLHEFSYKQDIISVCNPILGD 150
              R+Y+  L  L +++  +          +  S NGLI L   S     ++V NP    
Sbjct: 61  GALRLYSVDLDSLDSVSDVEHPMKRGGPTEVFGSSNGLIGL---SNSPTDLAVFNPSTRQ 117

Query: 151 -HLVLPQLKRKNVATRIRGF-----GYNHCTNQYKVIQILSYK--DQAAISSSKP-QVEV 201
            H + P        +  RG+     GY+  ++ YKV++++ +K   +  +  S P +V+V
Sbjct: 118 IHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKV 177

Query: 202 HTIGTNTWRNIGDLP-----------YVLNQPYYGAFLNSALHWYAHSHDKRTAF--MCS 248
            ++  N+W+ I  +            ++L +  YG    ++LHW         AF  +  
Sbjct: 178 FSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVR 237

Query: 249 FDLGDEQFR--QFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGV 306
           FDL  E+F   +FP          +    + +GV  G L L   + +  +D+W+MK+Y V
Sbjct: 238 FDLALEEFEIVRFPEAVANGNVDIQ----MDIGVLDGCLCLMCNYDQSYVDVWMMKEYNV 293

Query: 307 KESWTKEFVI 316
           ++SWTK F +
Sbjct: 294 RDSWTKVFTV 303

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 146/308 (47%), Gaps = 45/308 (14%)

Query: 38  SMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHL-----------ARA 86
           S  +LPL ++ ++  RLP+K++ + KCVC +W SL S+  FA  H             ++
Sbjct: 10  SPHNLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKS 69

Query: 87  PFSIMILEKF-----CKRIYTNSLVPLFTLNQGD---KERLSLLSSCNGLICLHEFSYKQ 138
           P+ ++   ++     C     N+     + + G+   ++   ++ +C+GL+C H   Y +
Sbjct: 70  PYGVITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFH-VDYDK 128

Query: 139 DIISVCNPI--LGDHLVLPQLKRKNVATRIR-GFGYNHCTNQYKVIQILSYKDQAAISSS 195
            +  + NP   L   L    L+  +    +  GFGY+   + YKV+ +L  + Q  I   
Sbjct: 129 SLY-LWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKI--- 184

Query: 196 KPQVEVHTIGTNTWRNIGDLP---YVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLG 252
             + ++++     WR+    P    V ++   G ++N  L+ +A +    +  + S+D+ 
Sbjct: 185 --ETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLN-WAATSSSSSWTIISYDMS 241

Query: 253 DEQFRQFPGPPTREYEKC-RPINSISVGVSGGFLYL---CDGFLEPNLDIWIMKKYGVKE 308
            ++F++ PGP       C R   ++++G   G L +   C G    N D+W+MK++G   
Sbjct: 242 RDEFKELPGPVC-----CGRGCFTMTLGDLRGCLSMVCYCKG---ANADVWVMKEFGEVY 293

Query: 309 SWTKEFVI 316
           SW+K   I
Sbjct: 294 SWSKLLSI 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUP5|FBK59_ARATH F-box/kelch-repeat protein At3g17530 OS=Arabidopsis thaliana GN=At3g17530 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 22/242 (9%)

Query: 39  MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCK 98
           + DLP  +  ++ SR+P K++ + K  CK W++L  DP F K +  +A    MI+     
Sbjct: 3   ISDLPHDLESEILSRVPAKSLAKWKTTCKRWYALFRDPSFVKKNFDKAGGREMIV-LMNS 61

Query: 99  RIYTNSL----------------VPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIIS 142
           R+Y+NS+                  L  LN      +S +  C+GLI     + +   + 
Sbjct: 62  RVYSNSVNLQGINNRFDPSMEVTGKLIKLNDSKGVDISAIFHCDGLILCT--TTESTGLV 119

Query: 143 VCNPILGD-HLVLPQLKRKNVATRIRGFGYNHCT-NQYKVIQILSYKDQAAISSSKPQVE 200
           V NP  G+   + P++  +       G+G +  + + YK+++   Y     +S    + E
Sbjct: 120 VWNPCTGEIRCIKPRIFYRCNDRYALGYGNSKSSCHSYKILRSCCYYVDQNLSLMAAEFE 179

Query: 201 VHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFP 260
           ++   T++WR++GD+   +     G  L    +W + S +K   FM  FD   E F + P
Sbjct: 180 IYDFSTDSWRDLGDITRDMIVYSSGVSLKGNTYWVSGSKEK-GFFMRYFDFSKEVFGRLP 238

Query: 261 GP 262
            P
Sbjct: 239 LP 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVX4|FB205_ARATH F-box protein At3g57590 OS=Arabidopsis thaliana GN=At3g57590 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 28/240 (11%)

Query: 39  MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARA---PFSIMILEK 95
           ME +P  +++++FSRLP K+++  + + K W S+   P F ++ L R+   P  +   E+
Sbjct: 1   MEPIPNDLILEIFSRLPAKSVIGFRTLSKHWASILRSPVFTELFLTRSSNRPRLLFAAER 60

Query: 96  FCKRIYTNSLVP-----------LFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISV- 143
             + ++ +S  P             T   GD  R  + S  +GL+C  +    +D   V 
Sbjct: 61  NGEWLFFSSPQPQNRYEKSSHLDYHTKFSGDVSRF-ICSYVSGLLCFPDLWLSKDASPVI 119

Query: 144 CNPILGDHLVLPQLKRKNVATRIRGF-GYNHCTNQYKVIQILSYKDQAAISSSKPQVEVH 202
           CNP  G +  LP L R   A   RGF G++    Q+KV+      +    S  +   E+ 
Sbjct: 120 CNPTTGMYESLPDLMRYKNA---RGFLGFDPIGKQFKVLS-----EAYPFSDQREHHEIL 171

Query: 203 TIGTN--TWR-NIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQF 259
           T+GT   +WR NI   P        G  +N  L++ A +    +  +  FD+  E+F+ F
Sbjct: 172 TLGTEELSWRSNIISCPAYDRSLSEGICINGVLYYLAQTLGVPSCVIICFDVRSEEFKYF 231

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUJ6|FB176_ARATH Putative F-box protein At3g22650 OS=Arabidopsis thaliana GN=At3g22650 PE=4 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 143/294 (48%), Gaps = 35/294 (11%)

Query: 42  LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHL---------ARAPFSIMI 92
           LP+ I+ ++  R+P++ + Q K  CK W +L  D  F   +L          R    + I
Sbjct: 9   LPIDIIEEICCRIPVEYLTQFKLTCKQWFALLKDKRFIYKYLDLFQEQERFIRIDRIVQI 68

Query: 93  LEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLI---CLHE--FSYKQDIISVCNPI 147
           ++   K   ++S +P    N     ++S +  C+GL+   C +E   SYK   ++V NP 
Sbjct: 69  IDPV-KGARSSSPIPQEFDNVA---QISTMVHCDGLLLCRCKNERSRSYK---LAVWNPF 121

Query: 148 LGDHLVLPQLKRKNVATRIRGFGY-NHCTNQYKVIQILS--YKDQAAISSS-KPQVEVHT 203
           L     +  +   + +    GFGY N C ++YK+++I     +D++ I+ S +P+++++ 
Sbjct: 122 LSRVKWIEPMDFYS-SNDFYGFGYDNVCRDEYKLLRIFDGEIEDESEIAGSYEPKIQIYD 180

Query: 204 IGTNTWRNIGD--LPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPG 261
             +++WR + D  L + ++ P  G  +   ++W AH +++   F+ SFD   E F+    
Sbjct: 181 FKSDSWRIVDDTRLDWSIDPPCKGVSVKGNMYWIAHWNNRPEIFIQSFDFSTETFKIVCN 240

Query: 262 PPTREYEKCRPINSISV-GVSGGFLYLCDGFLEP-NLDIWIMKKYGVK-ESWTK 312
            P     +C  +++ ++  + G  L L     E   +++WI  K   +  SWTK
Sbjct: 241 LPF----ECNVLDTAALSSLRGDRLSLLHQSGETMKIEVWITNKLSDEVVSWTK 290

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WQM8|FB58_ARATH F-box protein At1g53790 OS=Arabidopsis thaliana GN=At1g53790 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 27/252 (10%)

Query: 26  EEDGVLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLA- 84
           +E   L   Y      +P+ +L+D+FSR+P K+I + +CV K W S+   P F ++ +  
Sbjct: 66  QEGQPLQVGYVSCFRYIPIDLLMDIFSRVPAKSIARFRCVSKLWESILCRPDFKELFMTM 125

Query: 85  ---RAPFSIMILEKFCKRIY-------------TNSLVPLFTLNQGDKERLSLLSS-CNG 127
              R P  +   +     ++               SLVP     Q   +  S + S   G
Sbjct: 126 SSIRPPLLLFTFQDDDGNLFFFSSPHPQIPCNENTSLVPTRYHVQHTTDSFSEIGSPLCG 185

Query: 128 LICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGF-GYNHCTNQYKVIQILSY 186
            IC        D + +CNP+ G+ + LP+++ K++ T  R + GY+    Q KV+ I S 
Sbjct: 186 FIC-RRGKRNLDTMVICNPVTGESVSLPKVELKSINTETRPYLGYDPVRKQLKVLCIKS- 243

Query: 187 KDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHD--KRTA 244
            D    +  + QV     G + WR I   P+    P         + +Y    D   R +
Sbjct: 244 -DDIPNTCDEHQVLTLENGNHLWRTIQCKPHY---PKSDGICIDGILYYTAGFDMRARVS 299

Query: 245 FMCSFDLGDEQF 256
            +  FD+  E+F
Sbjct: 300 MVVCFDVRSEKF 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1A7|FBK75_ARATH F-box/kelch-repeat protein At3g59610 OS=Arabidopsis thaliana GN=At3g59610 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 126/276 (45%), Gaps = 27/276 (9%)

Query: 41  DLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYF--AKIHLARAPFSIMILEKFCK 98
           DLP  +  ++ S LPI+ + + +CVCK W++L  +  F  + + LAR  F ++   K C 
Sbjct: 7   DLPYDLEGEILSHLPIQILARFRCVCKRWNTLFKERRFFNSDLGLARPQFILLAESKICS 66

Query: 99  RIYTNSLVPLFTLNQ------GDKERLSL-LSSCNGLICLHEFSYKQDIISVCNPILGDH 151
            +  N   P   ++       G K  + + +  C+GL  L+   Y    I +CNP L   
Sbjct: 67  -VDVNLDGPSIEVHNLPSDIPGYKLYMPMHVEYCDGLF-LYATCYG---IGICNPWLRQ- 120

Query: 152 LVLPQLKRKNVATRIRGFGYNHCTNQYKVIQIL-SYKDQAAISSSKPQVEVHTIGTNTWR 210
             +   K         G GY++ + Q K  +IL SY     +++S     V  +G++ W+
Sbjct: 121 --IRWFKSSYEGYDFSGMGYDN-SRQDKHYKILGSYCTNTTMNAS-----VTELGSDAWK 172

Query: 211 N--IGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYE 268
           +       + L+   Y   LN  L+W A++H+ R  F+ SFD     F+ +   PT+   
Sbjct: 173 SYEFAFHSWNLSMSPYSVSLNGNLYWVAYNHESRDYFIQSFDFSTVSFKHYCILPTKNGH 232

Query: 269 KCRPINSISVGVSGGFLYLCDGFLEP-NLDIWIMKK 303
           +     S+++     F +L        N++IW+ K+
Sbjct: 233 RQCDGRSLAIFREDRFSFLEQEIYNTRNIEIWVTKE 268

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 128/283 (45%), Gaps = 34/283 (12%)

Query: 42  LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIM--------IL 93
           LP  + +++  RL +K + + +CVCKTW  L +DP F + +   +P   +        +L
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPAKFVSFYDKNFYML 64

Query: 94  EKFCKR-IYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHL 152
           +   K  + TN L   F L+Q   +  + +  C+G +C+   + K   + V NP      
Sbjct: 65  DVEGKHPVITNKLD--FPLDQSMIDESTCVLHCDGTLCV---TLKNHTLMVWNPFSKQFK 119

Query: 153 VLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNI 212
           ++P        + I GFGY+   + YKV+   ++ D+  +S++     V    T +W   
Sbjct: 120 IVPNPGIYQ-DSNILGFGYDPVHDDYKVV---TFIDRLDVSTA----HVFEFRTGSWGES 171

Query: 213 GDLPY--VLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKC 270
             + Y     +   G FL+  L+W A+        +C F+L   ++R+ P P   +    
Sbjct: 172 LRISYPDWHYRDRRGTFLDQYLYWIAYRSSADRFILC-FNLSTHEYRKLPLPVYNQ---- 226

Query: 271 RPINSISVGVSGGFLYLCD-GFLEPNLDIWIMKKYGVKESWTK 312
             + S  +GV+   L + +    +  + I +M+K G   SW+K
Sbjct: 227 -GVTSSWLGVTSQKLCITEYEMCKKEIRISVMEKTG---SWSK 265

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
224115288	411	predicted protein [Populus trichocarpa]	0.854	0.656	0.324	3e-42
224138404	477	predicted protein [Populus trichocarpa]	0.844	0.559	0.352	2e-40
224116290	410	predicted protein [Populus trichocarpa]	0.917	0.707	0.310	4e-40
224123162	452	predicted protein [Populus trichocarpa]	0.895	0.626	0.314	2e-35
357484725	441	F-box family protein [Medicago truncatul	0.848	0.607	0.325	9e-34
357484717	441	F-box family protein [Medicago truncatul	0.848	0.607	0.322	2e-33
357498033	471	S locus F-box protein [Medicago truncatu	0.914	0.613	0.292	2e-33
357483729	480	F-box [Medicago truncatula] gi|355513486	0.936	0.616	0.286	4e-33
388503998	479	unknown [Medicago truncatula]	0.943	0.622	0.290	4e-33
224129122	422	f-box family protein [Populus trichocarp	0.863	0.646	0.322	6e-32

>gi|224115288|ref|XP_002316992.1| predicted protein [Populus trichocarpa] gi|222860057|gb|EEE97604.1| predicted protein [Populus trichocarpa]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 168/302 (55%), Gaps = 32/302 (10%)

Query: 41  DLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIM--------- 91
           +LP  +++D+ SRLPI+ +L  K VCKTW  L SDP F ++HL R+P +++         
Sbjct: 38  ELPNALIIDILSRLPIRPLLNCKSVCKTWLHLMSDPSFVRLHLERSPTTLLIQKTPFERK 97

Query: 92  ---------ILEKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQD--I 140
                    I+E+   + +   ++ LF         + +L+SCNGL+CL+E S  +   +
Sbjct: 98  ESTEMLLVEIVEEDISKPFYIEIIRLFPTKNFPDTDVRILNSCNGLLCLYEDSGDKSDMM 157

Query: 141 ISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVE 200
           + VCNP+LG+++ +P +           FG++  +NQYKV+Q  ++  +  ++++    E
Sbjct: 158 VHVCNPVLGEYIDIPVVNTDKKFEHHLAFGFSSVSNQYKVLQ--TFYPEKDLTAAPCLAE 215

Query: 201 VHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFP 260
           ++T+GT  WR+IG+  + L      AFL+ ++HW  +  +    F+ +FD   EQF+   
Sbjct: 216 IYTVGTGQWRSIGNASFRLQSLDANAFLHDSIHWIEYRSNS-IGFVSAFDFVSEQFKLVA 274

Query: 261 GPPTREYE----KCRPINSISVGVSGGFLYLCDGFLEPN--LDIWIMKKYGVKESWTKEF 314
            PP  +      +C P    SVGV  G L++ +G    N   +IW+M++YG+KESWTK+F
Sbjct: 275 LPPASQIHDGMGRCYP---SSVGVIKGCLFMTNGVCIENEKFEIWVMEEYGIKESWTKKF 331

Query: 315 VI 316
           V+
Sbjct: 332 VL 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138404|ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|222833916|gb|EEE72393.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 153/301 (50%), Gaps = 34/301 (11%)

Query: 38  SMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMIL---- 93
           S+  LP+  LVD+ SRLP KTI    CVCK W  L   P FAK+H  RAP S+++     
Sbjct: 31  SISALPIQNLVDILSRLPFKTIFSCMCVCKKWKDLILAPDFAKLHHTRAPASLILRSHRH 90

Query: 94  ----------------EKFCKRIYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYK 137
                              C       L P F    G+ E   ++++CNGLIC+  F   
Sbjct: 91  GRRRRPRSLCLLDLEASDICSPDAAVKLSPDFGFPTGNFE---IVNTCNGLICIRHFHSP 147

Query: 138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKP 197
            D IS+ NP++GD++ LP  K+K+ +     FG++  T++YKVIQ +          SK 
Sbjct: 148 ND-ISILNPLVGDYITLPLTKKKHKSYVFSWFGHSPKTDEYKVIQFVQ-------QPSKL 199

Query: 198 QVEVHTIGTNTWRNI--GDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQ 255
           + E+HT+G  TW +I  G L   ++   + AF+   LHW  +   K + F+   + G E 
Sbjct: 200 EAEIHTLGKGTWTSIHGGALSPPIDMRCHNAFVGGCLHWIVNDPSK-SEFIYCLEFGREL 258

Query: 256 FRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTKEFV 315
           F+    PP            + +GV GG LY  D  L  + DIW+MK+YGV+ESWTKEF+
Sbjct: 259 FQPVAAPPHLGPNDKDRTGDMMLGVLGGCLYFFDYPLGDSFDIWVMKQYGVQESWTKEFI 318

Query: 316 I 316
           +
Sbjct: 319 L 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116290|ref|XP_002317261.1| predicted protein [Populus trichocarpa] gi|222860326|gb|EEE97873.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 169/328 (51%), Gaps = 38/328 (11%)

Query: 19  QAKEAAKEEDGVLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYF 78
           + + +  +  G    +   SM  LP  I  D+  +LP+K+ +Q +CVC+TW +L SD YF
Sbjct: 5   RGRRSRAKNGGNQVQDAEWSMSALPDDITADILLQLPLKSKIQCRCVCRTWRNLLSDSYF 64

Query: 79  AKIHLARA-----------------------PFSIMILEKFCKRIYTNSLVPLFTLNQGD 115
           +++   RA                        F ++ LE    R   N+++ L T N   
Sbjct: 65  SEVQRERAQSMLVLRSPPSCVSRKAAALAPNDFYVVDLESGSVR---NNVMKLNTKNNLP 121

Query: 116 KERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLP------QLKRKNVATRIRGF 169
              + L+ SCNGL+CL + + K+ +  +CNP+ G+H+  P      + + K +   + GF
Sbjct: 122 TCHVELVGSCNGLLCLFDKNSKK-VFYLCNPVTGEHVRTPANCKKEKQRGKTILDAVLGF 180

Query: 170 GYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLN 229
           G++  +N Y V++I   K    IS  + + E+   G N W++IG++P+   + ++G  LN
Sbjct: 181 GFSPKSNHYMVLRITRKKLTYPISILRSEGEICIFGDNEWKSIGEIPFPDCKKFFGVSLN 240

Query: 230 SALHWYAHSHDKRTA-FMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLC 288
            ALHW  +  D   A  +C+ D+  ++ R  P  P   +   R    +++GV    L++C
Sbjct: 241 GALHWILNLDDYEDADLICALDIDSKKIR--PMSPPNGFR--RDTTEMTLGVLRDCLFIC 296

Query: 289 DGFLEPNLDIWIMKKYGVKESWTKEFVI 316
           D     NLDIW+MK+YGVK+SWTKE VI
Sbjct: 297 DSMTLYNLDIWVMKEYGVKDSWTKEIVI 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123162|ref|XP_002330354.1| predicted protein [Populus trichocarpa] gi|222871558|gb|EEF08689.1| predicted protein [Populus trichocarpa]

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 161/324 (49%), Gaps = 41/324 (12%)

Query: 21  KEAAKEEDGVLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAK 80
           K A+  +  ++  +    M  LP  +++D+ SRLPIKTIL  +CVCKTW    SD +FAK
Sbjct: 7   KSASSSQIPIVIASSECLMNKLPSCLIMDILSRLPIKTILNCRCVCKTWLHYISDSFFAK 66

Query: 81  IHLARAPFSIMILEKFCKRIYTN------SLVPLFTLNQGDKERLS-------------- 120
           +HL R+P S+++     K I  N       LV +     G + R+               
Sbjct: 67  LHLERSPTSLLV-----KTISNNPESRSVQLVQITGKPVGLRFRVVEEMKFVQEINLPYN 121

Query: 121 ----LLSSCNGLICLHEF--SYKQDIISVCNPILGDHLVLPQLKRKNVA-TRIRGFGYNH 173
               + +SCNGL+C+ +       D I +CNPILG+++ +P    +     R    GY+ 
Sbjct: 122 NDFLIENSCNGLLCISKTFQDGSHDDIYLCNPILGEYISIPLAAGQGTRHKRSFSLGYSA 181

Query: 174 CTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALH 233
            T +YKV+     K       S+P+ E++TIGT  WR+I    ++L+   + +F+  ++H
Sbjct: 182 ITKEYKVLHTFYSKKGP---DSQPEAEIYTIGTGKWRSIHKALHILDIFMFDSFVCGSIH 238

Query: 234 WYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSG-GFLYLCDGFL 292
           W     D     + SF+  +EQF Q   PP   Y++     ++  G  G  F   C    
Sbjct: 239 WELRGEDNCVNSIGSFNFENEQFSQLSLPP--RYDEGGVTLTVFEGCLGVSFFNTC---C 293

Query: 293 EPNLDIWIMKKYGVKESWTKEFVI 316
           E   +IW+MK+YG K+SWTK+F +
Sbjct: 294 ETQFEIWVMKEYGNKQSWTKQFTV 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484725|ref|XP_003612650.1| F-box family protein [Medicago truncatula] gi|355513985|gb|AES95608.1| F-box family protein [Medicago truncatula]

 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 160/316 (50%), Gaps = 48/316 (15%)

Query: 38  SMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMI----- 92
           S  DL   I+ ++  +LPIK +   KCVCKTW++L S+PYFA ++   A    ++     
Sbjct: 25  SFADLSSLIITNILLQLPIKDVSICKCVCKTWNALISEPYFATLYSQHASLGFLLRTRNL 84

Query: 93  ---------LE---KFCKRIYTNSLV---PLFTL---NQGD----------KERLSLLSS 124
                    LE   K  +R +   +V   P F L   N  D           ++ S+++S
Sbjct: 85  RLVSRTLHLLEYQPKKFRRAFDIDVVNFNPKFKLPLRNANDTYQPTPYKPEDDKFSVVNS 144

Query: 125 CNGLICLHEFSYKQDIISVCNPILGDHLVLPQL-----KRKNVATRIRGFGYNHCTNQYK 179
           CNGL+CL E  Y  + + VCNPI+G+ + LP+       RK +       G+   TN+YK
Sbjct: 145 CNGLLCLSE-PYTVNHLVVCNPIIGEFIRLPEAIGIANTRKPICA---ALGFQPKTNEYK 200

Query: 180 VIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLP-YVLNQPYYGAFLNSALHWYAHS 238
           VI++    D     S    VE+HT+GT TWRN+   P +   +      +N ALHW  + 
Sbjct: 201 VIRMWKRCDGWCYKSDVMVVEMHTLGTATWRNVEVDPMFSFTRLGSPTCVNGALHWINYD 260

Query: 239 HDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDI 298
              +T  +  F+   E+F+ FP PP   +++     SI++    GFLY+C+  +   + +
Sbjct: 261 DKNKTRSILCFNFESEKFQSFPSPPHPHHKRL----SITMVELKGFLYICESTVNSCV-V 315

Query: 299 WIMKKYGVKESWTKEF 314
           W+MKKYG+ ESWT+ F
Sbjct: 316 WLMKKYGIGESWTRVF 331

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484717|ref|XP_003612646.1| F-box family protein [Medicago truncatula] gi|355513981|gb|AES95604.1| F-box family protein [Medicago truncatula]

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 159/316 (50%), Gaps = 48/316 (15%)

Query: 38  SMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMI----- 92
           S  DL   I+ ++  +LPIK +   KCVCKTW++L S+PYFA ++   A    ++     
Sbjct: 25  SFADLSSLIITNILLQLPIKDVSICKCVCKTWNALISEPYFATLYSQHASLGFLLRTRNL 84

Query: 93  ---------LE---KFCKRIYTNSLV---PLFTL---NQGD----------KERLSLLSS 124
                    LE   K  +R +   +V   P F L   N  D           ++  +++S
Sbjct: 85  RLVSRTLHLLEYQPKKFRRAFDIDVVNFNPKFKLPLRNANDTYQPTPYKPEDDKFGVVNS 144

Query: 125 CNGLICLHEFSYKQDIISVCNPILGDHLVLPQL-----KRKNVATRIRGFGYNHCTNQYK 179
           CNGL+CL E  Y  + + VCNPI+G+ + LP+       RK +       G+   TN+YK
Sbjct: 145 CNGLLCLSE-PYTVNHLVVCNPIIGEFIRLPEAIGIANTRKPICA---ALGFQPKTNEYK 200

Query: 180 VIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLP-YVLNQPYYGAFLNSALHWYAHS 238
           VI++    D     S    VE+HT+GT TWRN+   P +   +      +N ALHW  + 
Sbjct: 201 VIRMWKRCDGWCYKSDVMVVEMHTLGTTTWRNVEVDPMFSFTRLGSPTCVNGALHWINYD 260

Query: 239 HDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDI 298
              +T  +  F+   E+F+ FP PP   +++     SI++    GFLY+C+  +   + +
Sbjct: 261 DKNKTRSILCFNFESEKFQSFPSPPHPHHKRL----SITMVELKGFLYICESTVNSCV-V 315

Query: 299 WIMKKYGVKESWTKEF 314
           W+MKKYG+ ESWT+ F
Sbjct: 316 WLMKKYGIGESWTRVF 331

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498033|ref|XP_003619305.1| S locus F-box protein [Medicago truncatula] gi|355494320|gb|AES75523.1| S locus F-box protein [Medicago truncatula]

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 174/373 (46%), Gaps = 84/373 (22%)

Query: 14  TRSKFQAKEAAKEEDGVLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLC 73
            + K++ +EA  +E      +Y    + LP  +   +  +LPIK++L  KCVCK W  + 
Sbjct: 18  NKRKWRVEEAESDE----CRHY---FDILPSHLTAHILLQLPIKSLLICKCVCKIWKRMI 70

Query: 74  SDPYFAKIHLARAPFSIMILEKFCKRIYTN-------------------SLVPLFTL--- 111
           S+ +FAK+H  ++P S+MI  ++ KR+                      +L P+F L   
Sbjct: 71  SESHFAKLHFEQSPISLMIRTRYYKRVSRTLYLLECDPEKFEIGSNNHVNLEPIFRLPLR 130

Query: 112 -----------------------NQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPIL 148
                                     D+++ ++++SCNGL+CL E +    I+ +CNP +
Sbjct: 131 GDVKSLGMKSDKIKNKYKHVYIAGNSDRDKFNIVNSCNGLLCLSEPTTGNPIV-ICNPFM 189

Query: 149 GDHLVLPQL-------KRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQ--- 198
           G+ + LP+         R +V  +  GFG+   TN+YKVI I   +    ++SS  +   
Sbjct: 190 GEFIRLPETTTVRMPNDRVHVIGQEAGFGFYPKTNEYKVIHIWR-RSVIHVNSSDFEHVF 248

Query: 199 -VEVHTIGTNTWRNIGDLPYV----LNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGD 253
            VE+HT+GT TWRNI   P +    L  P     +N ALHW+  + + R   +  F    
Sbjct: 249 LVEIHTLGTPTWRNINVDPQISFSCLMNP---TCVNGALHWF--TFEGREMSILCFCFES 303

Query: 254 EQFRQFPGPPT----------REYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKK 303
           E+   FP PP            +Y     I  IS+G   GFLY+ D      + +W+M +
Sbjct: 304 EKLHSFPSPPVVIGSHLQDQIDKYGYLSGIIHISMGELKGFLYISDSNFFEYVTMWVMNE 363

Query: 304 YGVKESWTKEFVI 316
           YG+ ESWTK + I
Sbjct: 364 YGIGESWTKVYHI 376

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483729|ref|XP_003612151.1| F-box [Medicago truncatula] gi|355513486|gb|AES95109.1| F-box [Medicago truncatula]

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 171/377 (45%), Gaps = 81/377 (21%)

Query: 13  ITRSKFQAKEAAKEEDGVLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSL 72
           + R K     A  + D   +       + LP  +   +  RLP K++L  KCVCK W ++
Sbjct: 1   MKRKKISIAAARAKVDEAESRELCPYFDKLPSHLTAHILLRLPFKSVLICKCVCKVWKTI 60

Query: 73  CSDPYFAKIHLARAPFSIMILEKF----------CK----RIYTNS---LVPLFTL---- 111
            S+  FAK H  R+P S+MI  +           C+     I +N+   L P+F L    
Sbjct: 61  ISESQFAKSHFERSPISLMIRTRHRVSRTLYLLECEPDKFEIGSNNHVKLAPIFKLPLRS 120

Query: 112 ---------------------------NQGDKERLSL-------------LSSCNGLICL 131
                                         D+ R SL             ++SCNGL+CL
Sbjct: 121 FRDKRDQINNESKRPFRAARLVSGKNDENSDRGRQSLYIACNRDIDKFDIVNSCNGLLCL 180

Query: 132 HEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIR---GFGYNHCTNQYKVIQI----L 184
            + S+   I+ +CNP+ G+ + LP+        R++   GFG+   TN+YKVI +    +
Sbjct: 181 SDPSFGNPIV-ICNPVTGEFIRLPESTTNRTRVRMQGQAGFGFQPKTNEYKVISVWIRHV 239

Query: 185 SYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYV-LNQPYYGAFLNSALHWYAHSHDKRT 243
            + +Q      +  +E++T+GT +WRN+   P +  +   Y   +N ALHW      +R+
Sbjct: 240 KHANQWVF--ERVILEINTLGTTSWRNVEVDPQISFSSLKYPTCVNGALHWIRFEGQQRS 297

Query: 244 AFMCSFDLGDEQFRQFPGPP----TREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIW 299
             +  F+  +E+ + FP PP          CRP   IS+G   GFLY+CD     N+ +W
Sbjct: 298 ILVFCFE--NERLQSFPSPPHVFGNHNVFCCRP---ISMGELKGFLYICDPTFISNVSMW 352

Query: 300 IMKKYGVKESWTKEFVI 316
           +M +YG+ ESWTK + I
Sbjct: 353 VMNEYGIGESWTKIYNI 369

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503998|gb|AFK40065.1| unknown [Medicago truncatula]

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 168/375 (44%), Gaps = 77/375 (20%)

Query: 13  ITRSKFQAKEAAKEEDGVLATNYNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSL 72
           + R K     A  + D   +       + LP  +   +  RLP K++L  KCVCK W ++
Sbjct: 1   MKRKKISIAAARAKVDEAESRELCPYFDKLPSHLTAHILLRLPFKSVLICKCVCKVWKTI 60

Query: 73  CSDPYFAKIHLARAPFSIMILEKF----------CK----RIYTNS---LVPLFTL---- 111
            S+  FAK H  R+P S+MI  +           C+     I +N+   L P+F L    
Sbjct: 61  ISESQFAKSHFERSPISLMIRTRHRVSRTLYLLECEPDKFEIGSNNHVKLAPIFKLPLRS 120

Query: 112 ---------------------------NQGDKERLSL-------------LSSCNGLICL 131
                                         D+ R SL             ++SCNGL+CL
Sbjct: 121 FRDKRDQINNESKRPFRAARLVSGKNDENSDRGRQSLYIACNRDIDKFDIVNSCNGLLCL 180

Query: 132 HEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIR---GFGYNHCTNQYKVIQ--ILSY 186
            + S+   I+ +CNP+ G+ + LP+        R++   GFG+   TN+YKVI   I   
Sbjct: 181 SDPSFGNPIV-ICNPVTGEFIRLPESTTNRTRVRMQGQAGFGFQPKTNEYKVISVWIRHV 239

Query: 187 KDQAAISSSKPQVEVHTIGTNTWRNIGDLPYV-LNQPYYGAFLNSALHWYAHSHDKRTAF 245
           K        +  +E++T+GT +WRN+   P +  +   Y   +N ALHW      +R+  
Sbjct: 240 KHANQWVFERVILEINTLGTTSWRNVEVDPQISFSSLKYPTCVNGALHWIRFEGQQRSIL 299

Query: 246 MCSFDLGDEQFRQFPGPP----TREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIM 301
           +  F+  +E+ + FP PP          CRP   IS+G   GFLY+CD     N+ +W+M
Sbjct: 300 VFCFE--NERLQSFPSPPHVFGNHNVFCCRP---ISMGELKGFLYICDPTFISNVSMWVM 354

Query: 302 KKYGVKESWTKEFVI 316
            +YG+ ESWTK + I
Sbjct: 355 NEYGIGESWTKIYNI 369

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129122|ref|XP_002320506.1| f-box family protein [Populus trichocarpa] gi|222861279|gb|EEE98821.1| f-box family protein [Populus trichocarpa]

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 152/307 (49%), Gaps = 34/307 (11%)

Query: 37  VSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLA----RAPFSIMI 92
             ME LP  I  D+ SRLPI +++Q KCVC+ W +L  DP    ++L+          +I
Sbjct: 23  TGMELLPREIAHDILSRLPITSLVQFKCVCRAWRALVQDPQLVDLYLSCSTQDTDHPCLI 82

Query: 93  LEKFCKRIYTNSLVPL-FTLNQGDKERL--------------SLLSSCNGLICLHEFSYK 137
           L   C     N+L  + F  ++ +KE++               ++ SCNGL+CL +  Y 
Sbjct: 83  LH--CDFPIRNNLYFVDFAAHEEEKEKVKRIPAPFSSMMPEFEVVGSCNGLLCLSDSLY- 139

Query: 138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKD-QAAISSSK 196
            D + + NP  G +  LP+  +      + GFG+N  T +YKVI+I+ Y++       S+
Sbjct: 140 NDSLYIYNPFTGCYKELPKSLQYPDQEVVSGFGFNPKTKEYKVIRIVYYRNGHGGYPRSR 199

Query: 197 ------PQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHS-HDKRTAFMCSF 249
                  +V++ T+G   WR++G + Y L +   GA +N  LHW +    +K    + SF
Sbjct: 200 RIIYPLSEVQILTLGCPEWRSLGKVSYRLVRRASGALVNGRLHWISRPCRNKPARRLVSF 259

Query: 250 DLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKES 309
           DL DEQFR+   P      +C     +  G     +Y   G LE    IW+MK+Y VKES
Sbjct: 260 DLTDEQFREVSKPDCGGLNRCNYHLVVLRGCLSAAVYCNYGRLE----IWVMKEYNVKES 315

Query: 310 WTKEFVI 316
           W KE+ I
Sbjct: 316 WVKEYNI 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.819	0.711	0.263	3.8e-23
TAIR|locus:2077452	417	AT3G07870 "AT3G07870" [Arabido	0.661	0.501	0.312	9.3e-21
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.667	0.494	0.289	2.7e-17
TAIR|locus:2041016	420	AT2G43260 [Arabidopsis thalian	0.822	0.619	0.280	3e-14
TAIR|locus:2097483	521	AT3G59610 "AT3G59610" [Arabido	0.784	0.476	0.259	5.1e-14
TAIR|locus:2089473	410	AT3G21410 "AT3G21410" [Arabido	0.841	0.648	0.258	1.5e-13
TAIR|locus:2094947	360	AT3G16210 "AT3G16210" [Arabido	0.784	0.688	0.253	7.3e-13
TAIR|locus:2090567	388	AT3G17530 "AT3G17530" [Arabido	0.696	0.567	0.260	2.8e-12
TAIR|locus:2197021	461	AT1G53790 [Arabidopsis thalian	0.620	0.425	0.273	2.8e-12
TAIR|locus:2090582	368	AT3G17710 "AT3G17710" [Arabido	0.822	0.706	0.273	5.5e-12

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 80/304 (26%), Positives = 146/304 (48%)

Query:    38 SMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHL-----------ARA 86
             S  +LPL ++ ++  RLP+K++ + KCVC +W SL S+  FA  H             ++
Sbjct:    10 SPHNLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKS 69

Query:    87 PFSIMILEKF-CKRIYTNSLVPLFTL--NQGDKERLS-----LLSSCNGLICLHEFSYKQ 138
             P+ ++   ++  K    +SL    T+  ++ D E L      ++ +C+GL+C H   Y +
Sbjct:    70 PYGVITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFH-VDYDK 128

Query:   139 DIISVCNPI--LGDHLVLPQLKRKNVATRIR-GFGYNHCTNQYKVIQILSYKDQAAISSS 195
              +  + NP   L   L    L+  +    +  GFGY+   + YKV+ +L  + Q  I   
Sbjct:   129 SLY-LWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKI--- 184

Query:   196 KPQVEVHTIGTNTWRNIGDLP---YVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLG 252
               + ++++     WR+    P    V ++   G ++N  L+W A S       + S+D+ 
Sbjct:   185 --ETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSSWTII-SYDMS 241

Query:   253 DEQFRQFPGPPTREYEKC-RPINSISVGVSGGFLYL---CDGFLEPNLDIWIMKKYGVKE 308
              ++F++ PGP       C R   ++++G   G L +   C G    N D+W+MK++G   
Sbjct:   242 RDEFKELPGPVC-----CGRGCFTMTLGDLRGCLSMVCYCKG---ANADVWVMKEFGEVY 293

Query:   309 SWTK 312
             SW+K
Sbjct:   294 SWSK 297

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 9.3e-21, P = 9.3e-21
 Identities = 75/240 (31%), Positives = 113/240 (47%)

Query:    98 KRIYTNSLVPLFTLN-QGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQ 156
             KRI T      FTL          ++ SCNGL+CL +  Y  D + + NP   + L LP+
Sbjct:    99 KRIKTKK----FTLRFASSMPEFDVVGSCNGLLCLSDSLYN-DSLYLYNPFTTNSLELPE 153

Query:   157 LKRK-NVATRIRGFGYNHCTNQYKVIQILS-----------YKDQAAISSSKPQVEVHTI 204
                K +    + GFG++  T +YKV++I+            Y+ +  I   + +V++ T+
Sbjct:   154 CSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTL 213

Query:   205 GTNT------WRNIGDLPYVLNQPYYGAFLNSALHWYAHS--HDKRTAFMCSFDLGDEQF 256
              + T      WR++G  PY   +    A +N  LH+      H     F+ SFDL DE+F
Sbjct:   214 SSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRKFV-SFDLEDEEF 272

Query:   257 RQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTKEFVI 316
             ++ P P      +    N   V + G    +  G     LDIW+MK YGVKESW KE+ I
Sbjct:   273 KEIPKPDCGGLNRT---NHRLVNLKGCLCAVVYGNYG-KLDIWVMKTYGVKESWGKEYSI 328

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 69/238 (28%), Positives = 120/238 (50%)

Query:    88 FSIMILEKFCKRIYTNSLVPLFTLNQGDKER--LSLLSSCNGLICLHEFSYKQDIISVCN 145
             FS MI       +Y +  V L  LN     R  + ++ S NGL+C+   S  +  + + N
Sbjct:   131 FSEMIRNYVGDHLYDDRRVML-KLNAKSYRRNWVEIVGSSNGLVCI---SPGEGAVFLYN 186

Query:   146 PILGDHLVLPQ-LKRKNVAT-----RIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQV 199
             P  GD   LP+  + K+V       +  GFG++  T+ YK++++++  +    +S     
Sbjct:   187 PTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLVATSEDILDAS----- 241

Query:   200 EVHTIGTNTWRNIGDLPYVLNQPYY--GAFLNSALHW-YAHS-HDKRTAFMCSFDLGDEQ 255
              V+++  ++WR I +L Y  N   Y  G   N A+HW +  S H++R   + +FD+  E+
Sbjct:   242 -VYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTESRHNQRV--VVAFDIQTEE 298

Query:   256 FRQFPGPPTREYEKC-RPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYGVKESWTK 312
             FR+ P P   E E C    ++  VG   G L + +   + + DIW+M +YG  +SW++
Sbjct:   299 FREMPVPD--EAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSR 354

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2041016 AT2G43260 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 85/303 (28%), Positives = 132/303 (43%)

Query:    38 SMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKF- 96
             S++ LP  +L +V  RLP K+IL+ + V K W SL     FA+ H++       IL  + 
Sbjct:    10 SIDILP-ELLEEVLLRLPTKSILKCRIVSKQWRSLLESSRFAERHMSLQNSRRRILAAYN 68

Query:    97 CKRIYTNSLVPLFTLNQGDKERLSL-------LSSCNGLICLHEFSYKQDIISVCNPILG 149
             C       L+P     +GD+E + L         +C G+IC  E    QD I V NP   
Sbjct:    69 CDCGGRRKLLPESRF-EGDEEIVYLHCDASRPSMTCQGVICFPE----QDWIIVLNPSTS 123

Query:   150 DHLVLPQLKRKNVATRI------------RGFGYNHCTNQYKVIQILSYKDQAAISSSKP 197
                  P     N   RI             GFG +    +YKV++ +S+     +   +P
Sbjct:   124 QLRRFPSGLNHNCRFRIGLWKTFSPGNWVMGFGRDKVNGRYKVVR-MSFAFWR-VRQEEP 181

Query:   198 QVE--VHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQ 255
              VE  V  + T  WR +   PYV+N       +N +++W    H +    + + DL  E+
Sbjct:   182 VVECGVLDVDTGEWRKLSPPPYVVNVGSKSVCVNGSIYWL---HIQTVYRILALDLHKEE 238

Query:   256 FRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPN--LDIWIMKKYGVKESWTKE 313
             F + P PPT+       +++  V +    L L    + P   L++W M  Y  KE W+K 
Sbjct:   239 FHKVPVPPTQI-----TVDTQMVNLEDR-LVLAITRVSPEWILEVWGMDTY--KEKWSKT 290

Query:   314 FVI 316
             + I
Sbjct:   291 YSI 293

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2097483 AT3G59610 "AT3G59610" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 5.1e-14, P = 5.1e-14
 Identities = 72/277 (25%), Positives = 128/277 (46%)

Query:    41 DLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYF--AKIHLARAPFSIMILEKFCK 98
             DLP  +  ++ S LPI+ + + +CVCK W++L  +  F  + + LAR  F ++   K C 
Sbjct:     7 DLPYDLEGEILSHLPIQILARFRCVCKRWNTLFKERRFFNSDLGLARPQFILLAESKICS 66

Query:    99 RIYTNSLVPLFTLNQ------GDKERLSL-LSSCNGLICLHEFSYKQDIISVCNPILGDH 151
              +  N   P   ++       G K  + + +  C+GL  L+   Y    I +CNP L   
Sbjct:    67 -VDVNLDGPSIEVHNLPSDIPGYKLYMPMHVEYCDGLF-LYATCYG---IGICNPWLRQ- 120

Query:   152 LVLPQLKRKNVATRIRGFGYNHCTNQYKVIQIL-SYKDQAAISSSKPQVEVHTIGTNTWR 210
               +   K         G GY++ + Q K  +IL SY     +++S     V  +G++ W+
Sbjct:   121 --IRWFKSSYEGYDFSGMGYDN-SRQDKHYKILGSYCTNTTMNAS-----VTELGSDAWK 172

Query:   211 N--IGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTRE-Y 267
             +       + L+   Y   LN  L+W A++H+ R  F+ SFD     F+ +   PT+  +
Sbjct:   173 SYEFAFHSWNLSMSPYSVSLNGNLYWVAYNHESRDYFIQSFDFSTVSFKHYCILPTKNGH 232

Query:   268 EKCRPINSISVGVSGGFLYLCDGFLEP-NLDIWIMKK 303
              +C    S+++     F +L        N++IW+ K+
Sbjct:   233 RQCDG-RSLAIFREDRFSFLEQEIYNTRNIEIWVTKE 268

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089473 AT3G21410 "AT3G21410" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 75/290 (25%), Positives = 131/290 (45%)

Query:    42 LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCKRIY 101
             LP  +  ++  R+P K++L++K  CK W +L +D  F   HLA     I+   +  K I 
Sbjct:    38 LPFELFEEILCRVPTKSLLRLKLTCKRWLALFNDKRFIYKHLALVREHIIRTNQMVKII- 96

Query:   102 TNSLVPL---FTL-NQGD-KERLSLLSSCNGLI-CLHEFSYKQDIISVCNPILGDHLVLP 155
              N +V     F+L N+   K  +  +  C+GL+ C+ E       ++V NP L     + 
Sbjct:    97 -NPVVGACSSFSLPNKFQVKGEIYTMVPCDGLLLCIFETGS----MAVWNPCLNQVRWIF 151

Query:   156 QLKRKNVATRIRGFGYNHCT-NQYKVIQ----ILSYKDQAAISSSKPQVEVHTIGTNTWR 210
              L          G GY+  + + YK+++    + +  + A   S KP+V+++ + +N+W+
Sbjct:   152 LLNPSFRGCSCYGIGYDGLSRDSYKILRFVNGVFTKNEYANTGSYKPEVDIYELKSNSWK 211

Query:   211 NIG-DLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEK 269
                  L + +     G  L   ++W A  + K   F+ SF+   E F      P R Y+ 
Sbjct:   212 TFKVSLDWHVVLRCKGLSLKGNMYWIAKWNRKPDIFIQSFNFSTETFEPLCSLPVR-YD- 269

Query:   270 CRPINSISVGVSGGFLYLCDGFLEPN-LDIWIMKKY--GVKESWTKEFVI 316
                + ++S    G  L L     E + +D+W+  K   GV   WTK F +
Sbjct:   270 VHNVVALSA-FKGDNLSLLHQSKETSKIDVWVTNKVKNGVSILWTKLFSV 318

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 72/284 (25%), Positives = 131/284 (46%)

Query:    42 LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIH--LARAPF------SIMIL 93
             LP  + +++  RL +K + + +CVCKTW  L +DP F + +  ++ A F      +  +L
Sbjct:     5 LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPAKFVSFYDKNFYML 64

Query:    94 EKFCKR-IYTNSLVPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHL 152
             +   K  + TN L   F L+Q   +  + +  C+G +C+   + K   + V NP      
Sbjct:    65 DVEGKHPVITNKLD--FPLDQSMIDESTCVLHCDGTLCV---TLKNHTLMVWNPFSKQFK 119

Query:   153 VLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNI 212
             ++P        + I GFGY+   + YKV+  +   D+  +S++     V    T +W   
Sbjct:   120 IVPNPGIYQ-DSNILGFGYDPVHDDYKVVTFI---DRLDVSTA----HVFEFRTGSWGES 171

Query:   213 GDLPYVLNQPYY---GAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEK 269
               + Y  +  Y    G FL+  L+W A+        +C F+L   ++R+ P P    Y +
Sbjct:   172 LRISYP-DWHYRDRRGTFLDQYLYWIAYRSSADRFILC-FNLSTHEYRKLPLPV---YNQ 226

Query:   270 CRPINSISVGVSGGFLYLCD-GFLEPNLDIWIMKKYGVKESWTK 312
                + S  +GV+   L + +    +  + I +M+K G   SW+K
Sbjct:   227 --GVTSSWLGVTSQKLCITEYEMCKKEIRISVMEKTG---SWSK 265

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090567 AT3G17530 "AT3G17530" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 63/242 (26%), Positives = 111/242 (45%)

Query:    39 MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCK 98
             + DLP  +  ++ SR+P K++ + K  CK W++L  DP F K +  +A    MI+     
Sbjct:     3 ISDLPHDLESEILSRVPAKSLAKWKTTCKRWYALFRDPSFVKKNFDKAGGREMIV-LMNS 61

Query:    99 RIYTNSLV---------P-------LFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIIS 142
             R+Y+NS+          P       L  LN      +S +  C+GLI L   +    ++ 
Sbjct:    62 RVYSNSVNLQGINNRFDPSMEVTGKLIKLNDSKGVDISAIFHCDGLI-LCTTTESTGLV- 119

Query:   143 VCNPILGD-HLVLPQLKRKNVATRIRGFGYNHCT-NQYKVIQILSYKDQAAISSSKPQVE 200
             V NP  G+   + P++  +       G+G +  + + YK+++   Y     +S    + E
Sbjct:   120 VWNPCTGEIRCIKPRIFYRCNDRYALGYGNSKSSCHSYKILRSCCYYVDQNLSLMAAEFE 179

Query:   201 VHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFP 260
             ++   T++WR++GD+   +     G  L    +W + S +K   FM  FD   E F + P
Sbjct:   180 IYDFSTDSWRDLGDITRDMIVYSSGVSLKGNTYWVSGSKEKGF-FMRYFDFSKEVFGRLP 238

Query:   261 GP 262
              P
Sbjct:   239 LP 240

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197021 AT1G53790 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
 Identities = 59/216 (27%), Positives = 91/216 (42%)

Query:   104 SLVPLFTLNQGDKERLSLLSS--CNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKN 161
             SLVP     Q   +  S + S  C G IC        D + +CNP+ G+ + LP+++ K+
Sbjct:   161 SLVPTRYHVQHTTDSFSEIGSPLC-GFIC-RRGKRNLDTMVICNPVTGESVSLPKVELKS 218

Query:   162 VATRIRGF-GYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLN 220
             + T  R + GY+    Q KV+ I S  D    +  + QV     G + WR I   P+   
Sbjct:   219 INTETRPYLGYDPVRKQLKVLCIKS--DDIPNTCDEHQVLTLENGNHLWRTIQCKPHYPK 276

Query:   221 QPYYGAFLNSALHWYAHSHDK-RTAFMCSFDLGDEQFRQFPGPPTREY--EKCRPINSIS 277
                 G  ++  L++ A    + R + +  FD+  E+F  F          + C  IN   
Sbjct:   277 SD--GICIDGILYYTAGFDMRARVSMVVCFDVRSEKF-SFINIHVFMLMNDSCTLINY-- 331

Query:   278 VGVSGGFLYLCDGFLEPN-LDIWIMKKYGVKESWTK 312
              G  G   + C   L P  L  W++     K  WTK
Sbjct:   332 KGKLGALQFTC---LSPKRLRFWVLVN-AEKNIWTK 363

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0019773 "proteasome core complex, alpha-subunit complex" evidence=IEA

TAIR|locus:2090582 AT3G17710 "AT3G17710" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 5.5e-12, P = 5.5e-12
 Identities = 80/293 (27%), Positives = 134/293 (45%)

Query:    42 LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARA-PFSIMILEKFCKRI 100
             LP  +  ++ SRLP +++++ + VCK W+ L SD  F K HL RA P  I + E   K++
Sbjct:     6 LPWDLEEEILSRLPPRSLVRFRTVCKHWNGLFSDKRFVKKHLVRARPQFIFLTES--KKM 63

Query:   101 YTNSL----------VPLFTLNQGDKERLSLLSSCNGLICLHEFSYKQDIISVCNPILGD 150
             Y+  +          VP     Q  K+  + + +C+GL+   +F +KQ + +V NP L  
Sbjct:    64 YSIEIDLGGTIEVREVPYDFHCQPMKKNFTTIMACDGLL-FRDF-WKQGV-AVWNPWLRQ 120

Query:   151 HLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKD-QAAISSSKP----QVEVHTIG 205
                +  ++ ++   R  G GY+ C    K  +IL Y +    +S S      Q  ++   
Sbjct:   121 ---VGWIEYEDKGFRFCGVGYDSCKPD-KCYKILGYFNCTRRLSDSLQEGYYQAAIYECA 176

Query:   206 TNTWRNIGDLPYVLNQ-PYYGAF-LNSALHWYAHSHDKRTA-FMCSFDLGDEQFRQFPGP 262
             +  ++ I D P   N  P      +N  L+W AH+H +    F+ +FD   E F+ F   
Sbjct:   177 SQAFKFI-DTPNPFNLWPNKDPLSVNGNLYWLAHNHPETLEYFIETFDFSMEIFKPFCLL 235

Query:   263 PTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMK-KYGVKES--WTK 312
             P R+      +  ++V     F  L   F    ++IW+ K K   +E   W K
Sbjct:   236 PCRKDFGSNEL-VLAVFKEDRFSLLKQCFETTKIEIWVTKMKIDREEEVVWIK 287

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	1e-22
pfam12937	47	pfam12937, F-box-like, F-box-like	2e-08
pfam00646	48	pfam00646, F-box, F-box domain	2e-07
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	2e-05

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 94.0 bits (234), Expect = 1e-22
 Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 24/203 (11%)

Query: 122 LSSCNGLICLHEFSYKQDIISVCNPILGDH--LVLPQLKRKNVATRIRGFGYNHCTNQYK 179
           +  C+GLIC   FSY + ++ V NP  G    L  P+ +R N  +     GY+    QYK
Sbjct: 1   VVPCDGLIC---FSYGKRLV-VWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYK 56

Query: 180 VIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPY-YGAFLNSALHWYAHS 238
           V   L + D++   +   + +V+T+G+N+WR I +     +     G  +N  L++ A++
Sbjct: 57  V---LCFSDRSGNRNQS-EHQVYTLGSNSWRTI-ECSPPHHPLKSRGVCINGVLYYLAYT 111

Query: 239 -HDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGG----FLYLCDGFLE 293
                  F+ SFD+  E+F++F   P         ++ +S+    G         D    
Sbjct: 112 LKTNPDYFIVSFDVSSERFKEFIPLPCG---NSDSVDYLSLINYKGKLAVLKQKKDT--- 165

Query: 294 PNLDIWIMKKYGVKESWTKEFVI 316
            N D+W++   G K+ W+K F +
Sbjct: 166 NNFDLWVLNDAG-KQEWSKLFTV 187

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 39 MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYF 78
          + DLP  IL+ +FS L  + +L++  VC+ W  L SD   
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 38 SMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHL 83
          S+ DLP  +L+++ SRL  K +L++  V K W SL       K  L
Sbjct: 2  SLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 42 LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYF 78
          LP  IL ++ S+L  K +L+++ V + W SL     F
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	100.0
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.61
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.49
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.42
PHA02713	557	hypothetical protein; Provisional	98.96
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.93
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.91
PHA02713	557	hypothetical protein; Provisional	98.91
PHA02790	480	Kelch-like protein; Provisional	98.82
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.76
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.74
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.65
PHA03098	534	kelch-like protein; Provisional	98.58
PHA03098	534	kelch-like protein; Provisional	98.57
PHA02790	480	Kelch-like protein; Provisional	98.56
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.54
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.5
PLN02153	341	epithiospecifier protein	98.46
PLN02153	341	epithiospecifier protein	98.39
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.37
PLN02193	470	nitrile-specifier protein	98.35
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.31
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.28
PLN02193	470	nitrile-specifier protein	98.26
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.17
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.38
KOG4693	392	consensus Uncharacterized conserved protein, conta	97.36
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.78
KOG2997	366	consensus F-box protein FBX9 [General function pre	96.37
KOG1230	521	consensus Protein containing repeated kelch motifs	96.14
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.08
KOG4693	392	consensus Uncharacterized conserved protein, conta	95.91
KOG1230	521	consensus Protein containing repeated kelch motifs	95.61
PF13964	50	Kelch_6: Kelch motif	95.57
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	95.41
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	95.03
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	94.69
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.63
PF13964	50	Kelch_6: Kelch motif	94.07
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	93.83
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	93.63
smart00612	47	Kelch Kelch domain.	91.11
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	90.82
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	89.72
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	87.51
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	87.14
smart00612	47	Kelch Kelch domain.	86.47
PLN02772	398	guanylate kinase	86.19
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	85.22
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	85.21
PF13415	49	Kelch_3: Galactose oxidase, central domain	83.65
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	81.84
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	81.0

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=100.00  E-value=6.5e-32  Score=231.49  Aligned_cols=182  Identities=26%  Similarity=0.469  Sum_probs=139.9

Q ss_pred             eeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCcc--CceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeE
Q 047073          122 LSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVA--TRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQV  199 (316)
Q Consensus       122 ~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~--~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~  199 (316)
                      +++||||||+..    ...++||||+||+++.||+++.....  ....++|||+.+++||||++.....+    .....+
T Consensus         1 ~~sCnGLlc~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~----~~~~~~   72 (230)
T TIGR01640         1 VVPCDGLICFSY----GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN----RNQSEH   72 (230)
T ss_pred             CcccceEEEEec----CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC----CCCccE
Confidence            478999999987    47899999999999999987541111  12589999999999999999764321    245789


Q ss_pred             EEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCc-cEEEEEeCCCceee-EecCCCCccccCCCCccceE
Q 047073          200 EVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRT-AFMCSFDLGDEQFR-QFPGPPTREYEKCRPINSIS  277 (316)
Q Consensus       200 ~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~i~~fD~~~~~~~-~i~lPP~~~~~~~~~~~~~~  277 (316)
                      +||++++++||.+...+........+|++||++||+.....+.. ..|++||+++|+|+ .+++|+... ...   ....
T Consensus        73 ~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~-~~~---~~~~  148 (230)
T TIGR01640        73 QVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNS-DSV---DYLS  148 (230)
T ss_pred             EEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccc-ccc---cceE
Confidence            99999999999987433322222339999999999997653222 38999999999999 589954332 211   4568


Q ss_pred             EEEECCeEEEEEccC-CCeEEEEEEeeCCCCCCeeeEEEC
Q 047073          278 VGVSGGFLYLCDGFL-EPNLDIWIMKKYGVKESWTKEFVI  316 (316)
Q Consensus       278 L~~~~G~L~lv~~~~-~~~~~vW~l~~~~~~~~W~~~~~i  316 (316)
                      |++++|+||++.... ..+++||+|+|++.. .|+|+++|
T Consensus       149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~-~W~k~~~i  187 (230)
T TIGR01640       149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQ-EWSKLFTV  187 (230)
T ss_pred             EEEECCEEEEEEecCCCCcEEEEEECCCCCC-ceeEEEEE
Confidence            999999999998864 367999999988754 49999886

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.61  E-value=6.9e-15  Score=114.32  Aligned_cols=86  Identities=29%  Similarity=0.480  Sum_probs=69.3

Q ss_pred             ceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccCCC---eEEEEEE
Q 047073          225 GAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEP---NLDIWIM  301 (316)
Q Consensus       225 ~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~---~~~vW~l  301 (316)
                      |+++||.+||++.........|++||+.+|+|+.|++|......    .....|.+++|+|+++......   .++||+|
T Consensus         1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~----~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvL   76 (129)
T PF08268_consen    1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSS----DCSSTLIEYKGKLALVSYNDQGEPDSIDIWVL   76 (129)
T ss_pred             CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccc----cCccEEEEeCCeEEEEEecCCCCcceEEEEEe
Confidence            58999999999998333377999999999999999995121222    1778999999999999887544   5999999


Q ss_pred             eeCCCCCCeeeEEE
Q 047073          302 KKYGVKESWTKEFV  315 (316)
Q Consensus       302 ~~~~~~~~W~~~~~  315 (316)
                      +|++ +++|+|++.
T Consensus        77 eD~~-k~~Wsk~~~   89 (129)
T PF08268_consen   77 EDYE-KQEWSKKHI   89 (129)
T ss_pred             eccc-cceEEEEEE
Confidence            9887 567999865

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.49  E-value=2.9e-13  Score=109.64  Aligned_cols=88  Identities=43%  Similarity=0.788  Sum_probs=67.9

Q ss_pred             ceeeCCeEEEEEecCCCC-ccEEEEEeCCCcee-eEecCCCCccccCCCCccceEEEE-ECCeEEEEEccC-CCeEEEEE
Q 047073          225 GAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQF-RQFPGPPTREYEKCRPINSISVGV-SGGFLYLCDGFL-EPNLDIWI  300 (316)
Q Consensus       225 ~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~-~~i~lPP~~~~~~~~~~~~~~L~~-~~G~L~lv~~~~-~~~~~vW~  300 (316)
                      +|++||++||++...... ...|++||+.+|+| ..+++|+......    ....|++ .+|+||++.... ...++||+
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~----~~~~L~~v~~~~L~~~~~~~~~~~~~IWv   76 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDD----DSVSLSVVRGDCLCVLYQCDETSKIEIWV   76 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccC----CEEEEEEecCCEEEEEEeccCCccEEEEE
Confidence            589999999999986543 22899999999999 8889955444122    5667754 478999997542 45799999


Q ss_pred             EeeCC-CCCCeeeEEEC
Q 047073          301 MKKYG-VKESWTKEFVI  316 (316)
Q Consensus       301 l~~~~-~~~~W~~~~~i  316 (316)
                      |++++ ..++|+|.++|
T Consensus        77 m~~~~~~~~SWtK~~~i   93 (164)
T PF07734_consen   77 MKKYGYGKESWTKLFTI   93 (164)
T ss_pred             EeeeccCcceEEEEEEE
Confidence            99765 37799999986

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.42  E-value=2.8e-11  Score=108.34  Aligned_cols=258  Identities=9%  Similarity=0.078  Sum_probs=131.2

Q ss_pred             CCCCCCCHHHHHHHHhcCC-ccccccccccchhhhhhcCCHHHHHHHHhcCCCCcE-EEecc-C-CccccCC-Cccceec
Q 047073           37 VSMEDLPLPILVDVFSRLP-IKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIM-ILEKF-C-KRIYTNS-LVPLFTL  111 (316)
Q Consensus        37 ~~~~~LP~dll~~IL~rLP-~~sl~r~r~VcK~W~sli~s~~F~~~~~~~~~~~~~-~~~~~-~-~~~~~~~-~~~~~~~  111 (316)
                      +.|++||+|||..|..||| ..++.|+|+||++||+.+....-   . ...+..++ ++... + ..+-... .......
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK---K-NPFRTRPLILFNPINPSETLTDDRSYISRPGA   77 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc---c-CCcccccccccCcccCCCCccccccccccccc
Confidence            3588999999999999998 66899999999999998874210   0 00001111 11110 0 0000000 0000000


Q ss_pred             CCCCCCCcee---eeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCC--ccC----ceEEE-EEeCCC---CCe
Q 047073          112 NQGDKERLSL---LSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKN--VAT----RIRGF-GYNHCT---NQY  178 (316)
Q Consensus       112 ~~~~~~~~~~---~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~--~~~----~~~~~-~~d~~~---~~~  178 (316)
                      ......-+.+   -++.+|+|.-.+.+...+.+.+.||+++....+|+....-  +..    ..+.+ +.+...   -.|
T Consensus        78 ~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~~~~~~~  157 (373)
T PLN03215         78 FLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRRETRPGY  157 (373)
T ss_pred             eeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccccccccce
Confidence            0000000111   1456899877663335789999999999988777532200  000    01111 111110   012


Q ss_pred             --EEEEEEEeecccccCCCCCeEEEEE------eCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEe
Q 047073          179 --KVIQILSYKDQAAISSSKPQVEVHT------IGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFD  250 (316)
Q Consensus       179 --kvv~~~~~~~~~~~~~~~~~~~vy~------s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD  250 (316)
                        ++|... ..+++   .....+-|+.      -..++|+.++...   ..+..-|+.+|.+|.+...+     .+.++|
T Consensus       158 ~~~~~~~~-~~~~~---~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~---~~~~DIi~~kGkfYAvD~~G-----~l~~i~  225 (373)
T PLN03215        158 QRSALVKV-KEGDN---HRDGVLGIGRDGKINYWDGNVLKALKQMG---YHFSDIIVHKGQTYALDSIG-----IVYWIN  225 (373)
T ss_pred             eEEEEEEe-ecCCC---cceEEEEEeecCcEeeecCCeeeEccCCC---ceeeEEEEECCEEEEEcCCC-----eEEEEe
Confidence              222111 11111   0011111111      1147888886432   23344699999999995543     677777


Q ss_pred             CCCceeeEecCC-CCccc-cCCCCccceEEEEECCeEEEEEccC----------------CCeEEEEEEeeCCCCCCeee
Q 047073          251 LGDEQFRQFPGP-PTREY-EKCRPINSISVGVSGGFLYLCDGFL----------------EPNLDIWIMKKYGVKESWTK  312 (316)
Q Consensus       251 ~~~~~~~~i~lP-P~~~~-~~~~~~~~~~L~~~~G~L~lv~~~~----------------~~~~~vW~l~~~~~~~~W~~  312 (316)
                      .+-+ .+.+..+ ..... ..+  .....|+++.|+|++|....                ...++||.++..  ...|++
T Consensus       226 ~~l~-i~~v~~~i~~~~~~g~~--~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~--~~~Wve  300 (373)
T PLN03215        226 SDLE-FSRFGTSLDENITDGCW--TGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDE--LAKWME  300 (373)
T ss_pred             cCCc-eeeecceecccccCCcc--cCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCC--CCcEEE
Confidence            4322 2222210 11111 110  13567999999999988631                146899999643  357998


Q ss_pred             EEE
Q 047073          313 EFV  315 (316)
Q Consensus       313 ~~~  315 (316)
                      +.+
T Consensus       301 V~s  303 (373)
T PLN03215        301 VKT  303 (373)
T ss_pred             ecc
Confidence            764

>PHA02713 hypothetical protein; Provisional

Probab=98.96  E-value=6.7e-08  Score=93.11  Aligned_cols=150  Identities=13%  Similarity=0.109  Sum_probs=100.5

Q ss_pred             eeccCceEEeeeecc----CCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCC
Q 047073          122 LSSCNGLICLHEFSY----KQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKP  197 (316)
Q Consensus       122 ~~s~~Gll~~~~~~~----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~  197 (316)
                      ++..+|.|.+.++..    ....++.+||.+++|..+|+++. .+... ....++     -+|.+++...+.    ....
T Consensus       299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~-~R~~~-~~~~~~-----g~IYviGG~~~~----~~~~  367 (557)
T PHA02713        299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK-NRCRF-SLAVID-----DTIYAIGGQNGT----NVER  367 (557)
T ss_pred             EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc-hhhce-eEEEEC-----CEEEEECCcCCC----CCCc
Confidence            344567776665321    13568899999999999999975 33221 111221     245555443211    2356


Q ss_pred             eEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCC-------------------CccEEEEEeCCCceeeE
Q 047073          198 QVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDK-------------------RTAFMCSFDLGDEQFRQ  258 (316)
Q Consensus       198 ~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-------------------~~~~i~~fD~~~~~~~~  258 (316)
                      .+++|++.+++|+.++.+|..... ...+.++|.+|.+++....                   ....+.+||+.+++|+.
T Consensus       368 sve~Ydp~~~~W~~~~~mp~~r~~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~  446 (557)
T PHA02713        368 TIECYTMGDDKWKMLPDMPIALSS-YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET  446 (557)
T ss_pred             eEEEEECCCCeEEECCCCCccccc-ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence            799999999999999888765433 3357789999999865311                   02468999999999997


Q ss_pred             e-cCCCCccccCCCCccceEEEEECCeEEEEEcc
Q 047073          259 F-PGPPTREYEKCRPINSISVGVSGGFLYLCDGF  291 (316)
Q Consensus       259 i-~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~  291 (316)
                      + ++ |...       ....+++++|+|+++...
T Consensus       447 v~~m-~~~r-------~~~~~~~~~~~IYv~GG~  472 (557)
T PHA02713        447 LPNF-WTGT-------IRPGVVSHKDDIYVVCDI  472 (557)
T ss_pred             cCCC-Cccc-------ccCcEEEECCEEEEEeCC
Confidence            7 34 3332       344678999999999865

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.93  E-value=3.1e-08  Score=95.27  Aligned_cols=172  Identities=16%  Similarity=0.187  Sum_probs=115.2

Q ss_pred             eeeccCceEEeeeecc----CCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCC
Q 047073          121 LLSSCNGLICLHEFSY----KQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSK  196 (316)
Q Consensus       121 ~~~s~~Gll~~~~~~~----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~  196 (316)
                      -++..+|.|.+.++..    ..+.+..+||.+++|..+|++.. .+..  ++++.    -..+|.+++...+.    ...
T Consensus       327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~--~~v~~----l~g~iYavGG~dg~----~~l  395 (571)
T KOG4441|consen  327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT-KRSD--FGVAV----LDGKLYAVGGFDGE----KSL  395 (571)
T ss_pred             cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC-cccc--ceeEE----ECCEEEEEeccccc----ccc
Confidence            4455677777776421    24689999999999999999976 2221  12221    12455555543322    457


Q ss_pred             CeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEe-cCCCCccccCCCCc
Q 047073          197 PQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQF-PGPPTREYEKCRPI  273 (316)
Q Consensus       197 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~  273 (316)
                      ..+|.|++.++.|.....|+.. ......+.++|.+|-+++.....  -..+.+||+.+++|+.+ ++ +...       
T Consensus       396 ~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M-~~~R-------  466 (571)
T KOG4441|consen  396 NSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM-NTRR-------  466 (571)
T ss_pred             ccEEEecCCCCcccccCCCCcc-eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc-cccc-------
Confidence            7899999999999999888763 23334688999999998854332  36899999999999977 44 3322       


Q ss_pred             cceEEEEECCeEEEEEccCCCeEEEEEEeeCC-CCCCeeeE
Q 047073          274 NSISVGVSGGFLYLCDGFLEPNLDIWIMKKYG-VKESWTKE  313 (316)
Q Consensus       274 ~~~~L~~~~G~L~lv~~~~~~~~~vW~l~~~~-~~~~W~~~  313 (316)
                      ....+++++|+|+++....+ .-.+=..+-++ .+..|+..
T Consensus       467 ~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  467 SGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             ccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEc
Confidence            44568999999999998643 11111133333 34568765

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.91  E-value=4.6e-10  Score=70.75  Aligned_cols=43  Identities=28%  Similarity=0.645  Sum_probs=36.7

Q ss_pred             CCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHH
Q 047073           39 MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKI   81 (316)
Q Consensus        39 ~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~   81 (316)
                      |..||+|++.+||..||++++.++..|||+|++++.++.+-+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~   43 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR   43 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence            4689999999999999999999999999999999988765543

>PHA02713 hypothetical protein; Provisional

Probab=98.91  E-value=8.4e-08  Score=92.47  Aligned_cols=173  Identities=8%  Similarity=0.051  Sum_probs=109.2

Q ss_pred             eeeccCceEEeeeecc---CCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeeccccc-----
Q 047073          121 LLSSCNGLICLHEFSY---KQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAI-----  192 (316)
Q Consensus       121 ~~~s~~Gll~~~~~~~---~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~-----  192 (316)
                      .++..+|.|.+.++..   ....+.++||.|++|..+|+++. ..... .+..++     -+|.+++.......+     
T Consensus       346 ~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~-~r~~~-~~~~~~-----g~IYviGG~~~~~~~~~~~~  418 (557)
T PHA02713        346 SLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPI-ALSSY-GMCVLD-----QYIYIIGGRTEHIDYTSVHH  418 (557)
T ss_pred             eEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCc-ccccc-cEEEEC-----CEEEEEeCCCcccccccccc
Confidence            4456678776665321   13468999999999999999876 33221 111221     233333322110000     


Q ss_pred             ---------CCCCCeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCC-ceeeEe-
Q 047073          193 ---------SSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGD-EQFRQF-  259 (316)
Q Consensus       193 ---------~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~-~~~~~i-  259 (316)
                               ......++.|++.++.|+.++.++.... ....+.++|.||.+++.....  ...+.+||+++ ++|+.+ 
T Consensus       419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~  497 (557)
T PHA02713        419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT  497 (557)
T ss_pred             cccccccccccccceEEEECCCCCeEeecCCCCcccc-cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence                     0124679999999999999988766543 234688999999997643211  23578999999 799987 


Q ss_pred             cCCCCccccCCCCccceEEEEECCeEEEEEccCCCeEEEEEEeeCC-CCCCeeeE
Q 047073          260 PGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMKKYG-VKESWTKE  313 (316)
Q Consensus       260 ~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~vW~l~~~~-~~~~W~~~  313 (316)
                      ++ |...       .....++.+|+|+++....+ ..   ..+-|+ .+.+|+..
T Consensus       498 ~m-~~~r-------~~~~~~~~~~~iyv~Gg~~~-~~---~~e~yd~~~~~W~~~  540 (557)
T PHA02713        498 TT-ESRL-------SALHTILHDNTIMMLHCYES-YM---LQDTFNVYTYEWNHI  540 (557)
T ss_pred             cc-Cccc-------ccceeEEECCEEEEEeeecc-ee---ehhhcCcccccccch
Confidence            55 4433       55678999999999988633 11   123333 35578764

>PHA02790 Kelch-like protein; Provisional

Probab=98.82  E-value=2e-07  Score=88.41  Aligned_cols=142  Identities=10%  Similarity=0.010  Sum_probs=97.3

Q ss_pred             eeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEE
Q 047073          122 LSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEV  201 (316)
Q Consensus       122 ~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~v  201 (316)
                      ....+|.|.+.++......+..+||.+++|..+|+++. .+... .+..++     -+|.+++...      .....++.
T Consensus       314 ~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~-~r~~~-~~~~~~-----g~IYviGG~~------~~~~~ve~  380 (480)
T PHA02790        314 GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK-PRCNP-AVASIN-----NVIYVIGGHS------ETDTTTEY  380 (480)
T ss_pred             EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC-CCccc-EEEEEC-----CEEEEecCcC------CCCccEEE
Confidence            34568888777642223567889999999999999976 33221 122221     2455544321      11356899


Q ss_pred             EEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEE
Q 047073          202 HTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVS  281 (316)
Q Consensus       202 y~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~  281 (316)
                      |+++++.|+.++.++.+... ...+.+||.+|.+++       ...+||+++++|+.++-.|...       ....+++.
T Consensus       381 ydp~~~~W~~~~~m~~~r~~-~~~~~~~~~IYv~GG-------~~e~ydp~~~~W~~~~~m~~~r-------~~~~~~v~  445 (480)
T PHA02790        381 LLPNHDQWQFGPSTYYPHYK-SCALVFGRRLFLVGR-------NAEFYCESSNTWTLIDDPIYPR-------DNPELIIV  445 (480)
T ss_pred             EeCCCCEEEeCCCCCCcccc-ceEEEECCEEEEECC-------ceEEecCCCCcEeEcCCCCCCc-------cccEEEEE
Confidence            99999999999887765432 335679999999863       3678999999999873213322       44577899


Q ss_pred             CCeEEEEEcc
Q 047073          282 GGFLYLCDGF  291 (316)
Q Consensus       282 ~G~L~lv~~~  291 (316)
                      +|+|+++...
T Consensus       446 ~~~IYviGG~  455 (480)
T PHA02790        446 DNKLLLIGGF  455 (480)
T ss_pred             CCEEEEECCc
Confidence            9999999875

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.76  E-value=3.7e-07  Score=87.96  Aligned_cols=172  Identities=16%  Similarity=0.156  Sum_probs=116.0

Q ss_pred             eeeccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCC
Q 047073          121 LLSSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKP  197 (316)
Q Consensus       121 ~~~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~  197 (316)
                      -+++++|.|...++.   .....+-.+||.|.+|...++++. .+    .++|.....  -+|..++......   ....
T Consensus       375 ~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r----~~~gv~~~~--g~iYi~GG~~~~~---~~l~  444 (571)
T KOG4441|consen  375 GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RR----SGHGVAVLG--GKLYIIGGGDGSS---NCLN  444 (571)
T ss_pred             eeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ce----eeeEEEEEC--CEEEEEcCcCCCc---cccc
Confidence            456778888777642   124468999999999999998864 22    233332222  2344443322211   2578


Q ss_pred             eEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccce
Q 047073          198 QVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSI  276 (316)
Q Consensus       198 ~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~  276 (316)
                      .++.|++.++.|+.++.|+...... ..+.+||.||.+++..... -..+.+||+.+++|+.+...+...       ...
T Consensus       445 sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-------s~~  516 (571)
T KOG4441|consen  445 SVECYDPETNTWTLIAPMNTRRSGF-GVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-------SAV  516 (571)
T ss_pred             eEEEEcCCCCceeecCCcccccccc-eEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc-------ccc
Confidence            9999999999999999887654333 3677999999998764321 346999999999999994213333       556


Q ss_pred             EEEEECCeEEEEEccCC----CeEEEEEEeeCCCCCCeeeEE
Q 047073          277 SVGVSGGFLYLCDGFLE----PNLDIWIMKKYGVKESWTKEF  314 (316)
Q Consensus       277 ~L~~~~G~L~lv~~~~~----~~~~vW~l~~~~~~~~W~~~~  314 (316)
                      .++..+|+|+++.....    .+++.|   |. ++..|+...
T Consensus       517 g~~~~~~~ly~vGG~~~~~~l~~ve~y---dp-~~d~W~~~~  554 (571)
T KOG4441|consen  517 GVVVLGGKLYAVGGFDGNNNLNTVECY---DP-ETDTWTEVT  554 (571)
T ss_pred             cEEEECCEEEEEecccCccccceeEEc---CC-CCCceeeCC
Confidence            77899999999998632    566666   22 345698653

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.74  E-value=6.3e-09  Score=65.84  Aligned_cols=45  Identities=36%  Similarity=0.575  Sum_probs=38.2

Q ss_pred             CCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHHHH
Q 047073           39 MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHL   83 (316)
Q Consensus        39 ~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~~~   83 (316)
                      +..||+|++.+||.+|+..++.+++.|||+|++++.++.+...+.
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            347999999999999999999999999999999999998877654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.65  E-value=9.7e-09  Score=62.56  Aligned_cols=39  Identities=36%  Similarity=0.617  Sum_probs=36.7

Q ss_pred             CCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHH
Q 047073           42 LPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAK   80 (316)
Q Consensus        42 LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~   80 (316)
                      ||+|++.+||.+|+.+++.+++.|||+|+.++.++.|.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999887754

>PHA03098 kelch-like protein; Provisional

Probab=98.58  E-value=4.7e-06  Score=80.36  Aligned_cols=172  Identities=12%  Similarity=0.070  Sum_probs=107.8

Q ss_pred             eeccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCe
Q 047073          122 LSSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQ  198 (316)
Q Consensus       122 ~~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~  198 (316)
                      +...+|-|.+.++.   .....+.++||.|++|..+|+++. .+..... ..++     =+|+.++....++   .....
T Consensus       338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~-~~~~-----~~iYv~GG~~~~~---~~~~~  407 (534)
T PHA03098        338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-PRYNPCV-VNVN-----NLIYVIGGISKND---ELLKT  407 (534)
T ss_pred             EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-CCccceE-EEEC-----CEEEEECCcCCCC---cccce
Confidence            34456766665532   114568899999999999998876 3322211 1221     1444443321111   23567


Q ss_pred             EEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC----ccEEEEEeCCCceeeEecCCCCccccCCCCcc
Q 047073          199 VEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR----TAFMCSFDLGDEQFRQFPGPPTREYEKCRPIN  274 (316)
Q Consensus       199 ~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~----~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~  274 (316)
                      +++|+..++.|+.+..+|.... ....+..+|.+|.+++.....    ...+.+||+.+++|+.++..|...       .
T Consensus       408 v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-------~  479 (534)
T PHA03098        408 VECFSLNTNKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-------I  479 (534)
T ss_pred             EEEEeCCCCeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-------c
Confidence            9999999999999887765443 234677899999987653211    234999999999999884313322       3


Q ss_pred             ceEEEEECCeEEEEEccCCC--eEEEEEEeeCCCCCCeeeE
Q 047073          275 SISVGVSGGFLYLCDGFLEP--NLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       275 ~~~L~~~~G~L~lv~~~~~~--~~~vW~l~~~~~~~~W~~~  313 (316)
                      ...++..+|+|+++....+.  .-.||..+- + +..|+..
T Consensus       480 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~-~-~~~W~~~  518 (534)
T PHA03098        480 NASLCIFNNKIYVVGGDKYEYYINEIEVYDD-K-TNTWTLF  518 (534)
T ss_pred             cceEEEECCEEEEEcCCcCCcccceeEEEeC-C-CCEEEec
Confidence            34567789999998875321  235666642 2 4469854

>PHA03098 kelch-like protein; Provisional

Probab=98.57  E-value=4.1e-06  Score=80.72  Aligned_cols=154  Identities=14%  Similarity=0.082  Sum_probs=98.7

Q ss_pred             ceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCCCce
Q 047073          139 DIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYV  218 (316)
Q Consensus       139 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~  218 (316)
                      ..++.+||.|++|..+|+++. .+.... ....+     -+|+.++.....    .....+++|+..+++|+.++.+|.+
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~-~R~~~~-~~~~~-----~~lyv~GG~~~~----~~~~~v~~yd~~~~~W~~~~~lp~~  379 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIY-PRKNPG-VTVFN-----NRIYVIGGIYNS----ISLNTVESWKPGESKWREEPPLIFP  379 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCc-ccccce-EEEEC-----CEEEEEeCCCCC----EecceEEEEcCCCCceeeCCCcCcC
Confidence            478999999999999999875 222211 11111     234444432211    3356789999999999998877764


Q ss_pred             eccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccCCC--
Q 047073          219 LNQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEP--  294 (316)
Q Consensus       219 ~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~--  294 (316)
                      .. ....+.++|.+|.+++.....  ...+..||+.+++|+.++-.|...       .....+..+|+|+++......  
T Consensus       380 r~-~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-------~~~~~~~~~~~iyv~GG~~~~~~  451 (534)
T PHA03098        380 RY-NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-------YGGCAIYHDGKIYVIGGISYIDN  451 (534)
T ss_pred             Cc-cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-------cCceEEEECCEEEEECCccCCCC
Confidence            32 233577899999998743221  357899999999999873224333       233457789999998764211  


Q ss_pred             ---eEEEEEEeeCCCCCCeeeE
Q 047073          295 ---NLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       295 ---~~~vW~l~~~~~~~~W~~~  313 (316)
                         .-.+|..+-  .+..|+..
T Consensus       452 ~~~~~~v~~yd~--~~~~W~~~  471 (534)
T PHA03098        452 IKVYNIVESYNP--VTNKWTEL  471 (534)
T ss_pred             CcccceEEEecC--CCCceeeC
Confidence               123566532  24468864

>PHA02790 Kelch-like protein; Provisional

Probab=98.56  E-value=2.8e-06  Score=80.65  Aligned_cols=143  Identities=15%  Similarity=0.063  Sum_probs=94.6

Q ss_pred             cCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEE
Q 047073          125 CNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEV  201 (316)
Q Consensus       125 ~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~v  201 (316)
                      .++.|.+.++.   ........+||.++.|..+|+++. .+... .+...+     -+|.+++...       ....++.
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~-~r~~~-~~v~~~-----~~iYviGG~~-------~~~sve~  335 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS-PRLYA-SGVPAN-----NKLYVVGGLP-------NPTSVER  335 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc-hhhcc-eEEEEC-----CEEEEECCcC-------CCCceEE
Confidence            45666555431   113467889999999999999876 33221 111121     2444443321       1256899


Q ss_pred             EEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEE
Q 047073          202 HTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVS  281 (316)
Q Consensus       202 y~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~  281 (316)
                      |+..+++|..++.+|.... ....+.++|.+|.+++.... ...+..||+.+++|+.++.+|...       .....++.
T Consensus       336 ydp~~n~W~~~~~l~~~r~-~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~~r-------~~~~~~~~  406 (480)
T PHA02790        336 WFHGDAAWVNMPSLLKPRC-NPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYYPH-------YKSCALVF  406 (480)
T ss_pred             EECCCCeEEECCCCCCCCc-ccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCCcc-------ccceEEEE
Confidence            9999999999988875443 33467899999999875322 346889999999999884424333       33456789


Q ss_pred             CCeEEEEEc
Q 047073          282 GGFLYLCDG  290 (316)
Q Consensus       282 ~G~L~lv~~  290 (316)
                      +|+|+++..
T Consensus       407 ~~~IYv~GG  415 (480)
T PHA02790        407 GRRLFLVGR  415 (480)
T ss_pred             CCEEEEECC
Confidence            999999864

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.54  E-value=6.4e-06  Score=74.20  Aligned_cols=152  Identities=9%  Similarity=0.030  Sum_probs=93.2

Q ss_pred             eeccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCe
Q 047073          122 LSSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQ  198 (316)
Q Consensus       122 ~~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~  198 (316)
                      .+..+|.|.+..+.   .....++++||.|++|..+|+++...+.. .....++     =+|..+.....     .....
T Consensus       119 ~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~-~~~~~~~-----~~iYv~GG~~~-----~~~~~  187 (323)
T TIGR03548       119 ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQ-PVCVKLQ-----NELYVFGGGSN-----IAYTD  187 (323)
T ss_pred             EEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCc-ceEEEEC-----CEEEEEcCCCC-----ccccc
Confidence            34457777666531   12457999999999999999765312221 1111221     13444443211     11345


Q ss_pred             EEEEEeCCCceEecCCCCce-----eccCCcceeeCCeEEEEEecCCC--------------------------------
Q 047073          199 VEVHTIGTNTWRNIGDLPYV-----LNQPYYGAFLNSALHWYAHSHDK--------------------------------  241 (316)
Q Consensus       199 ~~vy~s~t~~W~~~~~~~~~-----~~~~~~~v~~~G~lywl~~~~~~--------------------------------  241 (316)
                      +++|+..+++|+.+..++..     .......+..+|.||.+++....                                
T Consensus       188 ~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (323)
T TIGR03548       188 GYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWY  267 (323)
T ss_pred             eEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCcccc
Confidence            78999999999998765321     11111124457899998765311                                


Q ss_pred             -CccEEEEEeCCCceeeEec-CCCCccccCCCCccceEEEEECCeEEEEEcc
Q 047073          242 -RTAFMCSFDLGDEQFRQFP-GPPTREYEKCRPINSISVGVSGGFLYLCDGF  291 (316)
Q Consensus       242 -~~~~i~~fD~~~~~~~~i~-lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~  291 (316)
                       ....+.+||+.+++|+.++ + |...-      ....++..+|+|+++...
T Consensus       268 ~~~~~v~~yd~~~~~W~~~~~~-p~~~r------~~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       268 NWNRKILIYNVRTGKWKSIGNS-PFFAR------CGAALLLTGNNIFSINGE  312 (323)
T ss_pred             CcCceEEEEECCCCeeeEcccc-ccccc------CchheEEECCEEEEEecc
Confidence             0146999999999999884 5 32111      344678999999998864

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.50  E-value=1.8e-05  Score=71.95  Aligned_cols=175  Identities=13%  Similarity=0.058  Sum_probs=101.0

Q ss_pred             ccCceEEeeeeccCCceEEEEcC--CCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeeccc--ccCCCCCeE
Q 047073          124 SCNGLICLHEFSYKQDIISVCNP--ILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQA--AISSSKPQV  199 (316)
Q Consensus       124 s~~Gll~~~~~~~~~~~~~v~NP--~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~--~~~~~~~~~  199 (316)
                      ..++-|.+..+. ....++++|+  .+++|..+|+++...+... .....+     -+|.++.......  ........+
T Consensus        15 ~~~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~-~~~~~~-----~~iYv~GG~~~~~~~~~~~~~~~v   87 (346)
T TIGR03547        15 IIGDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRNQA-VAAAID-----GKLYVFGGIGKANSEGSPQVFDDV   87 (346)
T ss_pred             EECCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcccc-eEEEEC-----CEEEEEeCCCCCCCCCcceecccE
Confidence            446666665522 2467888885  6788999999873122211 111121     2455554322110  000124579


Q ss_pred             EEEEeCCCceEecCC-CCceeccCCcce-eeCCeEEEEEecCCC-----------------------------------C
Q 047073          200 EVHTIGTNTWRNIGD-LPYVLNQPYYGA-FLNSALHWYAHSHDK-----------------------------------R  242 (316)
Q Consensus       200 ~vy~s~t~~W~~~~~-~~~~~~~~~~~v-~~~G~lywl~~~~~~-----------------------------------~  242 (316)
                      +.|+..++.|+.+.. +|..... ...+ .++|.||.+++....                                   .
T Consensus        88 ~~Yd~~~~~W~~~~~~~p~~~~~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (346)
T TIGR03547        88 YRYDPKKNSWQKLDTRSPVGLLG-ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFW  166 (346)
T ss_pred             EEEECCCCEEecCCCCCCCcccc-eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCc
Confidence            999999999999863 2322111 1123 579999999775311                                   0


Q ss_pred             ccEEEEEeCCCceeeEe-cCCCCccccCCCCccceEEEEECCeEEEEEccCC---CeEEEEEEeeCCCCCCeeeE
Q 047073          243 TAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSISVGVSGGFLYLCDGFLE---PNLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       243 ~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~---~~~~vW~l~~~~~~~~W~~~  313 (316)
                      ...+.+||+.+++|+.+ ++ |....      ....++..+|+|+++.....   ...++|..+-..++..|++.
T Consensus       167 ~~~v~~YDp~t~~W~~~~~~-p~~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~  234 (346)
T TIGR03547       167 NKNVLSYDPSTNQWRNLGEN-PFLGT------AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL  234 (346)
T ss_pred             cceEEEEECCCCceeECccC-CCCcC------CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeec
Confidence            14799999999999988 45 32111      33466788999999876421   23456655311123468764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=98.46  E-value=2e-05  Score=71.52  Aligned_cols=178  Identities=10%  Similarity=0.084  Sum_probs=101.8

Q ss_pred             eccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCC--CccCceEEEEEeCCCCCeEEEEEEEeecccc--cCCC
Q 047073          123 SSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRK--NVATRIRGFGYNHCTNQYKVIQILSYKDQAA--ISSS  195 (316)
Q Consensus       123 ~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~--~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~--~~~~  195 (316)
                      .+.++.|.+-.+.   .....++++||.|++|..++++...  +......++....    =+|+.+.....++.  ....
T Consensus        82 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~  157 (341)
T PLN02153         82 VAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE----NHVYVFGGVSKGGLMKTPER  157 (341)
T ss_pred             EEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC----CEEEEECCccCCCccCCCcc
Confidence            4445666554421   1134789999999999999875210  0111111111111    13444433221110  0012


Q ss_pred             CCeEEEEEeCCCceEecCCCCce--eccCCcceeeCCeEEEEEecCC-------CC--ccEEEEEeCCCceeeEecC---
Q 047073          196 KPQVEVHTIGTNTWRNIGDLPYV--LNQPYYGAFLNSALHWYAHSHD-------KR--TAFMCSFDLGDEQFRQFPG---  261 (316)
Q Consensus       196 ~~~~~vy~s~t~~W~~~~~~~~~--~~~~~~~v~~~G~lywl~~~~~-------~~--~~~i~~fD~~~~~~~~i~l---  261 (316)
                      ...+++|+..+++|+.++.+...  .......+.++|.+|.+.....       ..  ...+.+||+++++|+.++.   
T Consensus       158 ~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~  237 (341)
T PLN02153        158 FRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA  237 (341)
T ss_pred             cceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC
Confidence            35689999999999998754321  1222235678999998865321       00  2468999999999998842   


Q ss_pred             CCCccccCCCCccceEEEEECCeEEEEEccCC---------C--eEEEEEEeeCCCCCCeeeE
Q 047073          262 PPTREYEKCRPINSISVGVSGGFLYLCDGFLE---------P--NLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       262 PP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~---------~--~~~vW~l~~~~~~~~W~~~  313 (316)
                      .|...       .....+..+|+|+++.....         .  .-+||.++-.  +..|+++
T Consensus       238 ~P~~r-------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~  291 (341)
T PLN02153        238 KPSAR-------SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKL  291 (341)
T ss_pred             CCCCc-------ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEec
Confidence            02222       33345778899999877411         1  1278998642  4469865

>PLN02153 epithiospecifier protein

Probab=98.39  E-value=2.4e-05  Score=71.02  Aligned_cols=139  Identities=11%  Similarity=0.040  Sum_probs=84.8

Q ss_pred             ceEEEEcCCCCceEecCCCCCCCcc-CceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCC--
Q 047073          139 DIISVCNPILGDHLVLPQLKRKNVA-TRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDL--  215 (316)
Q Consensus       139 ~~~~v~NP~T~~~~~lP~~~~~~~~-~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~--  215 (316)
                      ..++++||.+++|..+|++...+.. .....+...    .-+|+.+......    .....+++|+..+++|+.+..+  
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~----~~~iyv~GG~~~~----~~~~~v~~yd~~t~~W~~~~~~~~  121 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV----GTKLYIFGGRDEK----REFSDFYSYDTVKNEWTFLTKLDE  121 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE----CCEEEEECCCCCC----CccCcEEEEECCCCEEEEeccCCC
Confidence            4799999999999998876421111 111111111    1245555432211    2345789999999999988654  


Q ss_pred             ---CceeccCCcceeeCCeEEEEEecCCCC-------ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeE
Q 047073          216 ---PYVLNQPYYGAFLNSALHWYAHSHDKR-------TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFL  285 (316)
Q Consensus       216 ---~~~~~~~~~~v~~~G~lywl~~~~~~~-------~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L  285 (316)
                         |... .....+..+|.||.+++.....       -..+.+||+.+++|..++.++......    ....++..+|+|
T Consensus       122 ~~~p~~R-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r----~~~~~~~~~~~i  196 (341)
T PLN02153        122 EGGPEAR-TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR----GGAGFAVVQGKI  196 (341)
T ss_pred             CCCCCCc-eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC----CcceEEEECCeE
Confidence               2221 1223577899999987753211       135889999999999875422111111    334567889999


Q ss_pred             EEEEc
Q 047073          286 YLCDG  290 (316)
Q Consensus       286 ~lv~~  290 (316)
                      +++..
T Consensus       197 yv~GG  201 (341)
T PLN02153        197 WVVYG  201 (341)
T ss_pred             EEEec
Confidence            98754

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.37  E-value=6.5e-05  Score=67.68  Aligned_cols=142  Identities=10%  Similarity=0.069  Sum_probs=86.1

Q ss_pred             CceEEEEcCCCCce----EecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecC
Q 047073          138 QDIISVCNPILGDH----LVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIG  213 (316)
Q Consensus       138 ~~~~~v~NP~T~~~----~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~  213 (316)
                      ...++.+|+.+++|    ..+|++|. ..... .+..++     -+|..+.....+    .....+++|+..++.|+.++
T Consensus        87 ~~~v~~~d~~~~~w~~~~~~~~~lp~-~~~~~-~~~~~~-----~~iYv~GG~~~~----~~~~~v~~yd~~~~~W~~~~  155 (323)
T TIGR03548        87 FSSVYRITLDESKEELICETIGNLPF-TFENG-SACYKD-----GTLYVGGGNRNG----KPSNKSYLFNLETQEWFELP  155 (323)
T ss_pred             ceeEEEEEEcCCceeeeeeEcCCCCc-CccCc-eEEEEC-----CEEEEEeCcCCC----ccCceEEEEcCCCCCeeECC
Confidence            35788999999987    77888775 33222 111221     244444432111    23568999999999999998


Q ss_pred             CCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEcc
Q 047073          214 DLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGF  291 (316)
Q Consensus       214 ~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~  291 (316)
                      .+|.........+.++|.||.+++........+.+||+.+++|+.++..+....... ......++..+|+|+++...
T Consensus       156 ~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~-~~~~~~~~~~~~~iyv~GG~  232 (323)
T TIGR03548       156 DFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPIS-LLGAASIKINESLLLCIGGF  232 (323)
T ss_pred             CCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCcee-ccceeEEEECCCEEEEECCc
Confidence            766433333335678999999987532212346899999999998743121110000 00233345567888888764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=98.35  E-value=8.8e-05  Score=70.32  Aligned_cols=178  Identities=7%  Similarity=0.050  Sum_probs=103.4

Q ss_pred             eccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeE
Q 047073          123 SSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQV  199 (316)
Q Consensus       123 ~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~  199 (316)
                      ...++.|.+..+.   .....++++||.|++|..++++...+.......+...    .=+|+.+......    .....+
T Consensus       225 v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~----~~~iYv~GG~~~~----~~~~~~  296 (470)
T PLN02193        225 VSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD----EENVYVFGGVSAT----ARLKTL  296 (470)
T ss_pred             EEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE----CCEEEEECCCCCC----CCcceE
Confidence            3446666555421   1145799999999999999876321111111122211    1245544332211    235678


Q ss_pred             EEEEeCCCceEecCCCCc--eeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceE
Q 047073          200 EVHTIGTNTWRNIGDLPY--VLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSIS  277 (316)
Q Consensus       200 ~vy~s~t~~W~~~~~~~~--~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~  277 (316)
                      ++|+..+++|+.++.+..  ........+.++|.+|.+..........+.+||+++++|+.++..+..+...    ....
T Consensus       297 ~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R----~~~~  372 (470)
T PLN02193        297 DSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER----SVFA  372 (470)
T ss_pred             EEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCc----ceeE
Confidence            999999999998764211  1112223567899999887643211357999999999999884211111111    3345


Q ss_pred             EEEECCeEEEEEccCC---------CeE--EEEEEeeCCCCCCeeeEE
Q 047073          278 VGVSGGFLYLCDGFLE---------PNL--DIWIMKKYGVKESWTKEF  314 (316)
Q Consensus       278 L~~~~G~L~lv~~~~~---------~~~--~vW~l~~~~~~~~W~~~~  314 (316)
                      .+..+++|+++.....         ..+  ++|.++-.  +..|++..
T Consensus       373 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~~  418 (470)
T PLN02193        373 SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TLQWERLD  418 (470)
T ss_pred             EEEECCEEEEECCccCCccccccCccceeccEEEEEcC--cCEEEEcc
Confidence            6778999998887421         112  58998642  44698653

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.31  E-value=9.5e-05  Score=68.08  Aligned_cols=177  Identities=13%  Similarity=0.006  Sum_probs=101.8

Q ss_pred             eccCceEEeeeeccCCceEEEEcCC--CCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeeccc-cc-CCCCCe
Q 047073          123 SSCNGLICLHEFSYKQDIISVCNPI--LGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQA-AI-SSSKPQ  198 (316)
Q Consensus       123 ~s~~Gll~~~~~~~~~~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~-~~-~~~~~~  198 (316)
                      +..++-|.+..+. ....++++|+.  +++|..+|+++...+.. ......+     -+|..++...... .. ......
T Consensus        35 ~~~~~~iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~-~~~v~~~-----~~IYV~GG~~~~~~~~~~~~~~~  107 (376)
T PRK14131         35 AIDNNTVYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGGPREQ-AVAAFID-----GKLYVFGGIGKTNSEGSPQVFDD  107 (376)
T ss_pred             EEECCEEEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCCCccc-ceEEEEC-----CEEEEEcCCCCCCCCCceeEccc
Confidence            4456677665422 24568888875  57899999876412211 1111111     1344443321100 00 012457


Q ss_pred             EEEEEeCCCceEecCCC-CceeccCCccee-eCCeEEEEEecCCC-----------------------------------
Q 047073          199 VEVHTIGTNTWRNIGDL-PYVLNQPYYGAF-LNSALHWYAHSHDK-----------------------------------  241 (316)
Q Consensus       199 ~~vy~s~t~~W~~~~~~-~~~~~~~~~~v~-~~G~lywl~~~~~~-----------------------------------  241 (316)
                      ++.|+..+++|+.+..+ |.... ....+. .+|.||.+++....                                   
T Consensus       108 v~~YD~~~n~W~~~~~~~p~~~~-~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (376)
T PRK14131        108 VYKYDPKTNSWQKLDTRSPVGLA-GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF  186 (376)
T ss_pred             EEEEeCCCCEEEeCCCCCCCccc-ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence            99999999999998742 33221 112333 79999999875310                                   


Q ss_pred             CccEEEEEeCCCceeeEe-cCCCCccccCCCCccceEEEEECCeEEEEEccC---CCeEEEEEEeeCCCCCCeeeEE
Q 047073          242 RTAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSISVGVSGGFLYLCDGFL---EPNLDIWIMKKYGVKESWTKEF  314 (316)
Q Consensus       242 ~~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~---~~~~~vW~l~~~~~~~~W~~~~  314 (316)
                      ....+.+||+.+++|+.+ ++ |....      ....++..+++|+++....   ....++|..+-+..+..|+++.
T Consensus       187 ~~~~v~~YD~~t~~W~~~~~~-p~~~~------~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~  256 (376)
T PRK14131        187 FNKEVLSYDPSTNQWKNAGES-PFLGT------AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP  256 (376)
T ss_pred             cCceEEEEECCCCeeeECCcC-CCCCC------CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence            014699999999999987 45 32111      3345677899999988632   2456677664222345698653

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.28  E-value=8e-05  Score=68.56  Aligned_cols=94  Identities=16%  Similarity=0.191  Sum_probs=60.8

Q ss_pred             CeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC----ccEEEEEeCCCceeeEe-cCCCCccccC-C
Q 047073          197 PQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR----TAFMCSFDLGDEQFRQF-PGPPTREYEK-C  270 (316)
Q Consensus       197 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~----~~~i~~fD~~~~~~~~i-~lPP~~~~~~-~  270 (316)
                      ..+++|+..++.|+.++.+|.........+.+++.||.+++.....    ......||+++++|..+ ++| ...... .
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p-~~~~~~~~  267 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP-PAPGGSSQ  267 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC-CCCcCCcC
Confidence            5799999999999998877653223333577799999998753211    34556778899999987 453 221100 0


Q ss_pred             CCccceEEEEECCeEEEEEcc
Q 047073          271 RPINSISVGVSGGFLYLCDGF  291 (316)
Q Consensus       271 ~~~~~~~L~~~~G~L~lv~~~  291 (316)
                      ........++.+|+|+++...
T Consensus       268 ~~~~~~~a~~~~~~iyv~GG~  288 (376)
T PRK14131        268 EGVAGAFAGYSNGVLLVAGGA  288 (376)
T ss_pred             CccceEeceeECCEEEEeecc
Confidence            000122356789999988754

>PLN02193 nitrile-specifier protein

Probab=98.26  E-value=9.3e-05  Score=70.14  Aligned_cols=160  Identities=11%  Similarity=0.082  Sum_probs=96.8

Q ss_pred             ceEEEEcCCCCceEecCCCCCCCc-cC-ceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCC-
Q 047073          139 DIISVCNPILGDHLVLPQLKRKNV-AT-RIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDL-  215 (316)
Q Consensus       139 ~~~~v~NP~T~~~~~lP~~~~~~~-~~-~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~-  215 (316)
                      ..++++||.+++|..+|+....+. .. ......++     =+|+.+......    .....+++|+..+++|+.+..+ 
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~-----~~lYvfGG~~~~----~~~ndv~~yD~~t~~W~~l~~~~  263 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG-----STLYVFGGRDAS----RQYNGFYSFDTTTNEWKLLTPVE  263 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC-----CEEEEECCCCCC----CCCccEEEEECCCCEEEEcCcCC
Confidence            468999999999998876421011 11 11111221     134444332111    2356799999999999998755 


Q ss_pred             --CceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccC
Q 047073          216 --PYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFL  292 (316)
Q Consensus       216 --~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~  292 (316)
                        |... .....+..++.||.+....... ...+.+||+.+++|+.++.|.......    ....++..+|+++++....
T Consensus       264 ~~P~~R-~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R----~~~~~~~~~gkiyviGG~~  338 (470)
T PLN02193        264 EGPTPR-SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIR----GGAGLEVVQGKVWVVYGFN  338 (470)
T ss_pred             CCCCCc-cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCC----CCcEEEEECCcEEEEECCC
Confidence              2221 2233566899999987753221 346889999999999886532222111    3446677899999887642


Q ss_pred             C-CeEEEEEEeeCCCCCCeeeEE
Q 047073          293 E-PNLDIWIMKKYGVKESWTKEF  314 (316)
Q Consensus       293 ~-~~~~vW~l~~~~~~~~W~~~~  314 (316)
                      . ..-++|+.+- . +..|++.-
T Consensus       339 g~~~~dv~~yD~-~-t~~W~~~~  359 (470)
T PLN02193        339 GCEVDDVHYYDP-V-QDKWTQVE  359 (470)
T ss_pred             CCccCceEEEEC-C-CCEEEEec
Confidence            2 2345777743 2 34698753

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.17  E-value=7.8e-05  Score=67.79  Aligned_cols=136  Identities=12%  Similarity=-0.001  Sum_probs=84.4

Q ss_pred             ceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEE--eCCCceEecCCCC
Q 047073          139 DIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHT--IGTNTWRNIGDLP  216 (316)
Q Consensus       139 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~--s~t~~W~~~~~~~  216 (316)
                      ..+.++||.|++|..+++++...... .....++     -+|+.+......+   .....+++|+  .+++.|..+..++
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~-~~~~~~~-----~~iyv~GG~~~~~---~~~~~~~~y~~~~~~~~W~~~~~m~  238 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAG-SAIVHKG-----NKLLLINGEIKPG---LRTAEVKQYLFTGGKLEWNKLPPLP  238 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCC-ceEEEEC-----CEEEEEeeeeCCC---ccchheEEEEecCCCceeeecCCCC
Confidence            57899999999999999886411221 1112221     2455554322111   1223455565  4677999998776


Q ss_pred             ceecc------CCcceeeCCeEEEEEecCCCC------------------ccEEEEEeCCCceeeEe-cCCCCccccCCC
Q 047073          217 YVLNQ------PYYGAFLNSALHWYAHSHDKR------------------TAFMCSFDLGDEQFRQF-PGPPTREYEKCR  271 (316)
Q Consensus       217 ~~~~~------~~~~v~~~G~lywl~~~~~~~------------------~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~  271 (316)
                      .....      ....+.++|.||.+++.....                  ...+.+||+++++|+.+ ++ |...     
T Consensus       239 ~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~~-----  312 (346)
T TIGR03547       239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL-PQGL-----  312 (346)
T ss_pred             CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC-CCCc-----
Confidence            54211      111467899999998753100                  12578999999999887 56 4332     


Q ss_pred             CccceEEEEECCeEEEEEcc
Q 047073          272 PINSISVGVSGGFLYLCDGF  291 (316)
Q Consensus       272 ~~~~~~L~~~~G~L~lv~~~  291 (316)
                        .....+.++|+|+++...
T Consensus       313 --~~~~~~~~~~~iyv~GG~  330 (346)
T TIGR03547       313 --AYGVSVSWNNGVLLIGGE  330 (346)
T ss_pred             --eeeEEEEcCCEEEEEecc
Confidence              223457789999999875

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.73  E-value=0.00026  Score=61.98  Aligned_cols=45  Identities=27%  Similarity=0.376  Sum_probs=39.8

Q ss_pred             CCCCCCC----HHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHH
Q 047073           37 VSMEDLP----LPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKI   81 (316)
Q Consensus        37 ~~~~~LP----~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~   81 (316)
                      ..+..||    +++.+.||+.|...+|..+..|||+|+.+++++..-++
T Consensus        73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk  121 (499)
T KOG0281|consen   73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK  121 (499)
T ss_pred             HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence            3455799    99999999999999999999999999999999876544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=7.4e-05  Score=64.59  Aligned_cols=43  Identities=40%  Similarity=0.596  Sum_probs=38.5

Q ss_pred             CCCCCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHH
Q 047073           36 NVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYF   78 (316)
Q Consensus        36 ~~~~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F   78 (316)
                      ...|..||||++..||++|+.++|.++..|||+|+.+-.+...
T Consensus        95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l  137 (419)
T KOG2120|consen   95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL  137 (419)
T ss_pred             CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence            3447899999999999999999999999999999998876553

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=97.36  E-value=0.0017  Score=55.26  Aligned_cols=94  Identities=17%  Similarity=0.270  Sum_probs=65.9

Q ss_pred             CCCCeEEEEEeCCCceEecC--CCCceeccCCcceeeCCeEEEEEecCCCC----------ccEEEEEeCCCceeeEecC
Q 047073          194 SSKPQVEVHTIGTNTWRNIG--DLPYVLNQPYYGAFLNSALHWYAHSHDKR----------TAFMCSFDLGDEQFRQFPG  261 (316)
Q Consensus       194 ~~~~~~~vy~s~t~~W~~~~--~~~~~~~~~~~~v~~~G~lywl~~~~~~~----------~~~i~~fD~~~~~~~~i~l  261 (316)
                      .....+++++..|-+|+.+.  ..|..+..+...+.++|.+|-.++.....          -..|++||+.|+.|..-+-
T Consensus       154 ~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~  233 (392)
T KOG4693|consen  154 RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE  233 (392)
T ss_pred             hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence            44677888889999999976  33444455666778899999998876431          3469999999999986522


Q ss_pred             CCCccccCCCCccceEEEEECCeEEEEEcc
Q 047073          262 PPTREYEKCRPINSISVGVSGGFLYLCDGF  291 (316)
Q Consensus       262 PP~~~~~~~~~~~~~~L~~~~G~L~lv~~~  291 (316)
                      -+..+...    ..-..-+++|+++++...
T Consensus       234 ~~~~P~GR----RSHS~fvYng~~Y~FGGY  259 (392)
T KOG4693|consen  234 NTMKPGGR----RSHSTFVYNGKMYMFGGY  259 (392)
T ss_pred             CCcCCCcc----cccceEEEcceEEEeccc
Confidence            12333222    333557889999998864

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.78  E-value=0.14  Score=48.83  Aligned_cols=162  Identities=13%  Similarity=0.105  Sum_probs=91.8

Q ss_pred             ceEEEEcCCCCceEecCCCCCCCccCc-eEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCCCc
Q 047073          139 DIISVCNPILGDHLVLPQLKRKNVATR-IRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPY  217 (316)
Q Consensus       139 ~~~~v~NP~T~~~~~lP~~~~~~~~~~-~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~  217 (316)
                      ..++.+|+.|++|..+.+....+.... ..+..+    +++ ++.++.....+   .....++||+..+..|..+.....
T Consensus       139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~----g~~-l~vfGG~~~~~---~~~ndl~i~d~~~~~W~~~~~~g~  210 (482)
T KOG0379|consen  139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVV----GTK-LVVFGGIGGTG---DSLNDLHIYDLETSTWSELDTQGE  210 (482)
T ss_pred             hheEeccCCCCcEEEecCcCCCCCCcccceEEEE----CCE-EEEECCccCcc---cceeeeeeeccccccceecccCCC
Confidence            489999999999998775433111111 112222    123 33332221111   257889999999999998763321


Q ss_pred             e--eccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccCC
Q 047073          218 V--LNQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLE  293 (316)
Q Consensus       218 ~--~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~  293 (316)
                      .  .......+.+++.++.+.+...++  -.-+..||+.+.+|..++.=.......    ....++..+..+.++.....
T Consensus       211 ~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R----~~h~~~~~~~~~~l~gG~~~  286 (482)
T KOG0379|consen  211 APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR----SGHSLTVSGDHLLLFGGGTD  286 (482)
T ss_pred             CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc----ceeeeEEECCEEEEEcCCcc
Confidence            1  112222455555555555444232  456899999999998442101222211    34455666667888777543


Q ss_pred             ----CeEEEEEEeeCCCCCCeeeEE
Q 047073          294 ----PNLDIWIMKKYGVKESWTKEF  314 (316)
Q Consensus       294 ----~~~~vW~l~~~~~~~~W~~~~  314 (316)
                          .--++|.|+..  +..|++..
T Consensus       287 ~~~~~l~~~~~l~~~--~~~w~~~~  309 (482)
T KOG0379|consen  287 PKQEPLGDLYGLDLE--TLVWSKVE  309 (482)
T ss_pred             ccccccccccccccc--ccceeeee
Confidence                35577888543  44688764

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=96.37  E-value=0.0016  Score=56.73  Aligned_cols=47  Identities=19%  Similarity=0.456  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHhcCC-----ccccccccccchhhhhhcCCHHHHHHHHhc
Q 047073           39 MEDLPLPILVDVFSRLP-----IKTILQIKCVCKTWHSLCSDPYFAKIHLAR   85 (316)
Q Consensus        39 ~~~LP~dll~~IL~rLP-----~~sl~r~r~VcK~W~sli~s~~F~~~~~~~   85 (316)
                      +..||+|||.+||.++=     +.++.++.+|||.|+-...+|.|-+..+..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~K  158 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLK  158 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHH
Confidence            45799999999998754     589999999999999999999998877654

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=96.14  E-value=0.15  Score=46.38  Aligned_cols=112  Identities=13%  Similarity=0.115  Sum_probs=69.4

Q ss_pred             CCeEEEEEeCCCceEecCCCCcee-ccCCcceee-CCeEEEEEecCCCC-------ccEEEEEeCCCceeeEecCCCCcc
Q 047073          196 KPQVEVHTIGTNTWRNIGDLPYVL-NQPYYGAFL-NSALHWYAHSHDKR-------TAFMCSFDLGDEQFRQFPGPPTRE  266 (316)
Q Consensus       196 ~~~~~vy~s~t~~W~~~~~~~~~~-~~~~~~v~~-~G~lywl~~~~~~~-------~~~i~~fD~~~~~~~~i~lPP~~~  266 (316)
                      ...+.+|+..+++|+.+..+..++ .+....|.+ .|.+|..+++-...       ..-+..||+.+.+|..+.+ +..+
T Consensus        97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~-~g~P  175 (521)
T KOG1230|consen   97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEF-GGGP  175 (521)
T ss_pred             eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeecc-CCCC
Confidence            456778899999999876432222 222223444 46555554443221       3358999999999999988 5444


Q ss_pred             ccCCCCccceEEEEECCeEEEEEccCC------CeEEEEEEeeCCCCCCeeeEE
Q 047073          267 YEKCRPINSISVGVSGGFLYLCDGFLE------PNLDIWIMKKYGVKESWTKEF  314 (316)
Q Consensus       267 ~~~~~~~~~~~L~~~~G~L~lv~~~~~------~~~~vW~l~~~~~~~~W~~~~  314 (316)
                      ...    ..-+++.++.+|.++...++      --=+||+.+-  ++..|+|..
T Consensus       176 S~R----SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL--dtykW~Kle  223 (521)
T KOG1230|consen  176 SPR----SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL--DTYKWSKLE  223 (521)
T ss_pred             CCC----ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec--cceeeeecc
Confidence            332    44578889999988876543      1224566532  245798853

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.08  E-value=0.37  Score=43.79  Aligned_cols=132  Identities=12%  Similarity=0.095  Sum_probs=74.9

Q ss_pred             eeeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccC-CCCCeE
Q 047073          121 LLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAIS-SSKPQV  199 (316)
Q Consensus       121 ~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~-~~~~~~  199 (316)
                      +.+-.+.-|+..+ .  .....|+|+.|.....+|.+.. ..... +.+..   .+  ++.++.......... .....+
T Consensus        71 F~al~gskIv~~d-~--~~~t~vyDt~t~av~~~P~l~~-pk~~p-isv~V---G~--~LY~m~~~~~~~~~~~~~~~~F  140 (342)
T PF07893_consen   71 FFALHGSKIVAVD-Q--SGRTLVYDTDTRAVATGPRLHS-PKRCP-ISVSV---GD--KLYAMDRSPFPEPAGRPDFPCF  140 (342)
T ss_pred             EEEecCCeEEEEc-C--CCCeEEEECCCCeEeccCCCCC-CCcce-EEEEe---CC--eEEEeeccCccccccCccceeE
Confidence            3333344444444 2  5679999999999999998765 22222 22222   11  255554432211000 000145


Q ss_pred             EEE--E--------eCCCceEecCCCCceeccC------Cc-ceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEe---
Q 047073          200 EVH--T--------IGTNTWRNIGDLPYVLNQP------YY-GAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQF---  259 (316)
Q Consensus       200 ~vy--~--------s~t~~W~~~~~~~~~~~~~------~~-~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i---  259 (316)
                      |++  +        ..+.+|+.++.+|+.....      .. .|+ +|.-.|++..+.  ...-.+||+++.+|+..   
T Consensus       141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~--~~GTysfDt~~~~W~~~GdW  217 (342)
T PF07893_consen  141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR--RWGTYSFDTESHEWRKHGDW  217 (342)
T ss_pred             EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCC--ceEEEEEEcCCcceeeccce
Confidence            555  3        2234788887766543321      12 454 899899977731  02689999999999988   


Q ss_pred             cCCCCcc
Q 047073          260 PGPPTRE  266 (316)
Q Consensus       260 ~lPP~~~  266 (316)
                      .| |...
T Consensus       218 ~L-PF~G  223 (342)
T PF07893_consen  218 ML-PFHG  223 (342)
T ss_pred             ec-CcCC
Confidence            68 6544

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=95.91  E-value=0.11  Score=44.42  Aligned_cols=141  Identities=11%  Similarity=0.045  Sum_probs=84.9

Q ss_pred             CceEEEEcCCCCceEecCCCCCCCccCc----------eEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCC
Q 047073          138 QDIISVCNPILGDHLVLPQLKRKNVATR----------IRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTN  207 (316)
Q Consensus       138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~----------~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~  207 (316)
                      ....+++|-.|-.|+.+-.-..++.+++          .+.||  ...+++-.+.     ...  +.++..+.+++..|+
T Consensus       156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFG--GR~D~~gpfH-----s~~--e~Yc~~i~~ld~~T~  226 (392)
T KOG4693|consen  156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFG--GRSDESGPFH-----SIH--EQYCDTIMALDLATG  226 (392)
T ss_pred             hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEec--cccccCCCcc-----chh--hhhcceeEEEecccc
Confidence            4579999999999998764333223322          11111  1111111110     001  267888999999999


Q ss_pred             ceEecCCCCceec--cCCcceeeCCeEEEEEecCCCC---ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEEC
Q 047073          208 TWRNIGDLPYVLN--QPYYGAFLNSALHWYAHSHDKR---TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSG  282 (316)
Q Consensus       208 ~W~~~~~~~~~~~--~~~~~v~~~G~lywl~~~~~~~---~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~  282 (316)
                      .|...+..+..+.  ...+....||.+|..++....-   -.-+..||+.+..|..|..--..+...    .....++.+
T Consensus       227 aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aR----RRqC~~v~g  302 (392)
T KOG4693|consen  227 AWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSAR----RRQCSVVSG  302 (392)
T ss_pred             ccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcc----cceeEEEEC
Confidence            9987653222211  2223456799999987764221   346899999999999996521122111    445567789


Q ss_pred             CeEEEEEcc
Q 047073          283 GFLYLCDGF  291 (316)
Q Consensus       283 G~L~lv~~~  291 (316)
                      ||++++...
T Consensus       303 ~kv~LFGGT  311 (392)
T KOG4693|consen  303 GKVYLFGGT  311 (392)
T ss_pred             CEEEEecCC
Confidence            999988754

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=95.61  E-value=0.51  Score=43.05  Aligned_cols=166  Identities=11%  Similarity=0.088  Sum_probs=87.4

Q ss_pred             CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecc---cccCCCCCeEEEEEeCCCceEecC-
Q 047073          138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQ---AAISSSKPQVEVHTIGTNTWRNIG-  213 (316)
Q Consensus       138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~---~~~~~~~~~~~vy~s~t~~W~~~~-  213 (316)
                      ...+|++|--+.+|..+-.+.. +..++...+...++.   .+..++....+   ..+ .+.-.+++|+..+..|..+. 
T Consensus        97 YndLy~Yn~k~~eWkk~~spn~-P~pRsshq~va~~s~---~l~~fGGEfaSPnq~qF-~HYkD~W~fd~~trkweql~~  171 (521)
T KOG1230|consen   97 YNDLYSYNTKKNEWKKVVSPNA-PPPRSSHQAVAVPSN---ILWLFGGEFASPNQEQF-HHYKDLWLFDLKTRKWEQLEF  171 (521)
T ss_pred             eeeeeEEeccccceeEeccCCC-cCCCccceeEEeccC---eEEEeccccCCcchhhh-hhhhheeeeeeccchheeecc
Confidence            5689999999999987544333 222222333333433   22222111111   110 33556889999999999876 


Q ss_pred             -CCCceeccCCcceeeCCeEEEEEecCCCC-----ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEE-CCeEE
Q 047073          214 -DLPYVLNQPYYGAFLNSALHWYAHSHDKR-----TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVS-GGFLY  286 (316)
Q Consensus       214 -~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~-~G~L~  286 (316)
                       ..|.+. ...+-|.....|.-.++=....     ..-|.+||+++=+|+.+..+-..+...    ...++.+. +|.++
T Consensus       172 ~g~PS~R-SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpR----SGcq~~vtpqg~i~  246 (521)
T KOG1230|consen  172 GGGPSPR-SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPR----SGCQFSVTPQGGIV  246 (521)
T ss_pred             CCCCCCC-ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCC----CcceEEecCCCcEE
Confidence             333322 1122222222222221111100     235899999999999996632112211    44555665 78777


Q ss_pred             EEEccC-----------CCeEEEEEEeeCC---CCCCeeeE
Q 047073          287 LCDGFL-----------EPNLDIWIMKKYG---VKESWTKE  313 (316)
Q Consensus       287 lv~~~~-----------~~~~~vW~l~~~~---~~~~W~~~  313 (316)
                      +.....           ..+=++|.|+-..   ++-.|+++
T Consensus       247 vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kv  287 (521)
T KOG1230|consen  247 VYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKV  287 (521)
T ss_pred             EEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeec
Confidence            665421           2567899997432   22346654

>PF13964 Kelch_6: Kelch motif

Probab=95.57  E-value=0.03  Score=35.15  Aligned_cols=36  Identities=6%  Similarity=0.158  Sum_probs=30.3

Q ss_pred             cceeeCCeEEEEEecCC-CC-ccEEEEEeCCCceeeEe
Q 047073          224 YGAFLNSALHWYAHSHD-KR-TAFMCSFDLGDEQFRQF  259 (316)
Q Consensus       224 ~~v~~~G~lywl~~~~~-~~-~~~i~~fD~~~~~~~~i  259 (316)
                      ..|.++|.||.+++... .. ...+..||+++++|+.+
T Consensus         6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~   43 (50)
T PF13964_consen    6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQL   43 (50)
T ss_pred             EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEEC
Confidence            36889999999988865 22 56899999999999988

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=95.41  E-value=0.9  Score=43.85  Aligned_cols=233  Identities=10%  Similarity=0.073  Sum_probs=117.7

Q ss_pred             CCCCCCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHHHHhcCC-CC---c---EEEecc----C-Ccccc
Q 047073           35 YNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAP-FS---I---MILEKF----C-KRIYT  102 (316)
Q Consensus        35 ~~~~~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~~~~~~~-~~---~---~~~~~~----~-~~~~~  102 (316)
                      ....+..||.++...||..|+.+++.+++.||+.|+.++.+.....+.+.... ..   .   +-....    . .++|.
T Consensus       104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~  183 (537)
T KOG0274|consen  104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYR  183 (537)
T ss_pred             ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhh
Confidence            35567789999999999999999999999999999999987666543332221 11   1   111000    1 12222


Q ss_pred             -----CCCccceecC----CCC-CCCceeeeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEe
Q 047073          103 -----NSLVPLFTLN----QGD-KERLSLLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYN  172 (316)
Q Consensus       103 -----~~~~~~~~~~----~~~-~~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d  172 (316)
                           ...+.....+    ..+ .....+...-++-.|..+..  ...+.+|+..+++....+..   .....+-++.+.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~s~--~~tl~~~~~~~~~~i~~~l~---GH~g~V~~l~~~  258 (537)
T KOG0274|consen  184 RRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSGSD--DSTLHLWDLNNGYLILTRLV---GHFGGVWGLAFP  258 (537)
T ss_pred             hhhhccccccccccccceeecccCcchhhhheeecCeEEecCC--CceeEEeecccceEEEeecc---CCCCCceeEEEe
Confidence                 1111111000    000 00111111111222333212  55667999999987764332   233334455553


Q ss_pred             CCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCC-CCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeC
Q 047073          173 HCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGD-LPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDL  251 (316)
Q Consensus       173 ~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~  251 (316)
                      .  ++.+++-..          ...+..|.+..+|.=..+-. ....    ...+...+ .+-.++..   +..|.++|+
T Consensus       259 ~--~~~~lvsgS----------~D~t~rvWd~~sg~C~~~l~gh~st----v~~~~~~~-~~~~sgs~---D~tVkVW~v  318 (537)
T KOG0274|consen  259 S--GGDKLVSGS----------TDKTERVWDCSTGECTHSLQGHTSS----VRCLTIDP-FLLVSGSR---DNTVKVWDV  318 (537)
T ss_pred             c--CCCEEEEEe----------cCCcEEeEecCCCcEEEEecCCCce----EEEEEccC-ceEeeccC---CceEEEEec
Confidence            3  345555432          24566676766664433211 1100    00111111 22222111   568888998


Q ss_pred             CCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccCCCeEEEEEEe
Q 047073          252 GDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLDIWIMK  302 (316)
Q Consensus       252 ~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~vW~l~  302 (316)
                      .+.....+.- - +.       ....-+.+++.+.+.... +..+.||-..
T Consensus       319 ~n~~~l~l~~-~-h~-------~~V~~v~~~~~~lvsgs~-d~~v~VW~~~  359 (537)
T KOG0274|consen  319 TNGACLNLLR-G-HT-------GPVNCVQLDEPLLVSGSY-DGTVKVWDPR  359 (537)
T ss_pred             cCcceEEEec-c-cc-------ccEEEEEecCCEEEEEec-CceEEEEEhh
Confidence            8766544322 1 11       334555566666555554 5589999754

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=95.03  E-value=0.71  Score=44.04  Aligned_cols=160  Identities=9%  Similarity=0.002  Sum_probs=89.0

Q ss_pred             eEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCCCc-e
Q 047073          140 IISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPY-V  218 (316)
Q Consensus       140 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~-~  218 (316)
                      +++|+|--+..|.........+....-..+..-   + =+++.++......   .....+..|+..|+.|+.+..... +
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~---~-~~l~lfGG~~~~~---~~~~~l~~~d~~t~~W~~l~~~~~~P  161 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV---G-DKLYLFGGTDKKY---RNLNELHSLDLSTRTWSLLSPTGDPP  161 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEE---C-CeEEEEccccCCC---CChhheEeccCCCCcEEEecCcCCCC
Confidence            599999999888865543221111111111110   1 2344443322111   346789999999999998763322 1


Q ss_pred             eccCCc-ceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccC---
Q 047073          219 LNQPYY-GAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFL---  292 (316)
Q Consensus       219 ~~~~~~-~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~---  292 (316)
                      ...... .+..+-.+|..++.+...  ...+.+||+++.+|..+......+...    ..-.++..+++++++..-.   
T Consensus       162 ~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR----~gH~~~~~~~~~~v~gG~~~~~  237 (482)
T KOG0379|consen  162 PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPR----YGHAMVVVGNKLLVFGGGDDGD  237 (482)
T ss_pred             CCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCC----CCceEEEECCeEEEEeccccCC
Confidence            112233 344455566665554332  457999999999999985422222111    4446678888888877642   


Q ss_pred             CCeEEEEEEeeCCCCCCeee
Q 047073          293 EPNLDIWIMKKYGVKESWTK  312 (316)
Q Consensus       293 ~~~~~vW~l~~~~~~~~W~~  312 (316)
                      ...=++|.|+-.  .-.|.+
T Consensus       238 ~~l~D~~~ldl~--~~~W~~  255 (482)
T KOG0379|consen  238 VYLNDVHILDLS--TWEWKL  255 (482)
T ss_pred             ceecceEeeecc--cceeee
Confidence            144467777532  234653

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=94.69  E-value=0.093  Score=32.24  Aligned_cols=38  Identities=8%  Similarity=0.133  Sum_probs=31.4

Q ss_pred             cceeeCCeEEEEEecCC-CC-ccEEEEEeCCCceeeEe-cC
Q 047073          224 YGAFLNSALHWYAHSHD-KR-TAFMCSFDLGDEQFRQF-PG  261 (316)
Q Consensus       224 ~~v~~~G~lywl~~~~~-~~-~~~i~~fD~~~~~~~~i-~l  261 (316)
                      ..+.++|.+|.+++... .. ...+..||+.+++|..+ ++
T Consensus         6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m   46 (47)
T PF01344_consen    6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM   46 (47)
T ss_dssp             EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence            36889999999998866 22 67899999999999987 44

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.63  E-value=0.55  Score=40.62  Aligned_cols=122  Identities=13%  Similarity=0.167  Sum_probs=73.1

Q ss_pred             eeeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEE
Q 047073          121 LLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVE  200 (316)
Q Consensus       121 ~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~  200 (316)
                      ++..-+|=|-.....  ...+..+||.++.-..+|.+..  .....-.+..|+..    -+.+..        .....+.
T Consensus       194 i~atpdGsvwyasla--gnaiaridp~~~~aev~p~P~~--~~~gsRriwsdpig----~~witt--------wg~g~l~  257 (353)
T COG4257         194 ICATPDGSVWYASLA--GNAIARIDPFAGHAEVVPQPNA--LKAGSRRIWSDPIG----RAWITT--------WGTGSLH  257 (353)
T ss_pred             eEECCCCcEEEEecc--ccceEEcccccCCcceecCCCc--ccccccccccCccC----cEEEec--------cCCceee
Confidence            334445555444212  5678889999998888887754  11112233333321    122222        3357788


Q ss_pred             EEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCC
Q 047073          201 VHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGP  262 (316)
Q Consensus       201 vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lP  262 (316)
                      .|+..+-+|++.+.+......+..-|.-.|. .|++.-+   ...|..||+++++|+.+++|
T Consensus       258 rfdPs~~sW~eypLPgs~arpys~rVD~~gr-VW~sea~---agai~rfdpeta~ftv~p~p  315 (353)
T COG4257         258 RFDPSVTSWIEYPLPGSKARPYSMRVDRHGR-VWLSEAD---AGAIGRFDPETARFTVLPIP  315 (353)
T ss_pred             EeCcccccceeeeCCCCCCCcceeeeccCCc-EEeeccc---cCceeecCcccceEEEecCC
Confidence            8999999999876443333333223333444 4554333   56999999999999999994

>PF13964 Kelch_6: Kelch motif

Probab=94.07  E-value=0.13  Score=32.22  Aligned_cols=22  Identities=14%  Similarity=0.213  Sum_probs=20.1

Q ss_pred             CceEEEEcCCCCceEecCCCCC
Q 047073          138 QDIISVCNPILGDHLVLPQLKR  159 (316)
Q Consensus       138 ~~~~~v~NP~T~~~~~lP~~~~  159 (316)
                      ...+.++||.|++|..||+++.
T Consensus        27 ~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen   27 SNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             cccEEEEcCCCCcEEECCCCCC
Confidence            5789999999999999999875

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=93.83  E-value=0.45  Score=36.61  Aligned_cols=72  Identities=25%  Similarity=0.335  Sum_probs=48.6

Q ss_pred             EEEEEeCCCc--eeeEecCCCCccccCC------CCccceEEEEECCeEEEEEccC---------CCeEEEEEEeeC-CC
Q 047073          245 FMCSFDLGDE--QFRQFPGPPTREYEKC------RPINSISVGVSGGFLYLCDGFL---------EPNLDIWIMKKY-GV  306 (316)
Q Consensus       245 ~i~~fD~~~~--~~~~i~lPP~~~~~~~------~~~~~~~L~~~~G~L~lv~~~~---------~~~~~vW~l~~~-~~  306 (316)
                      .|+..|+-.+  .++.|+||+.......      .......+++.+|+|-+|....         +.++.+|.|... ++
T Consensus         7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~   86 (131)
T PF07762_consen    7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS   86 (131)
T ss_pred             CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence            5788888765  7888999643332111      1124556788999998888642         357999999874 12


Q ss_pred             CCCeeeEEEC
Q 047073          307 KESWTKEFVI  316 (316)
Q Consensus       307 ~~~W~~~~~i  316 (316)
                      ...|.+.+++
T Consensus        87 ~~~W~~d~~v   96 (131)
T PF07762_consen   87 SWEWKKDCEV   96 (131)
T ss_pred             CCCEEEeEEE
Confidence            4469998864

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=93.63  E-value=0.21  Score=31.13  Aligned_cols=37  Identities=11%  Similarity=0.210  Sum_probs=29.7

Q ss_pred             ceeeCCeEEEEEec--CCCC--ccEEEEEeCCCceeeEecC
Q 047073          225 GAFLNSALHWYAHS--HDKR--TAFMCSFDLGDEQFRQFPG  261 (316)
Q Consensus       225 ~v~~~G~lywl~~~--~~~~--~~~i~~fD~~~~~~~~i~l  261 (316)
                      .+.++|+||.++..  +...  ...+..||+++.+|+.++.
T Consensus         7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~   47 (49)
T PF07646_consen    7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP   47 (49)
T ss_pred             EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence            67889999999887  1111  6679999999999998854

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>smart00612 Kelch Kelch domain

Probab=91.11  E-value=0.4  Score=28.92  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=20.4

Q ss_pred             CCCeEEEEEeCCCceEecCCCCcee
Q 047073          195 SKPQVEVHTIGTNTWRNIGDLPYVL  219 (316)
Q Consensus       195 ~~~~~~vy~s~t~~W~~~~~~~~~~  219 (316)
                      ....+++|+++++.|+.++.++...
T Consensus        13 ~~~~v~~yd~~~~~W~~~~~~~~~r   37 (47)
T smart00612       13 RLKSVEVYDPETNKWTPLPSMPTPR   37 (47)
T ss_pred             eeeeEEEECCCCCeEccCCCCCCcc
Confidence            3577999999999999988776543

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=90.82  E-value=0.48  Score=29.29  Aligned_cols=35  Identities=6%  Similarity=0.213  Sum_probs=21.7

Q ss_pred             ceee-CCeEEEEEecCCCC--ccEEEEEeCCCceeeEe
Q 047073          225 GAFL-NSALHWYAHSHDKR--TAFMCSFDLGDEQFRQF  259 (316)
Q Consensus       225 ~v~~-~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i  259 (316)
                      .+.+ ++.+|..++.....  -.-+..||+++++|+.+
T Consensus         7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~   44 (49)
T PF13418_consen    7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL   44 (49)
T ss_dssp             EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred             EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence            4555 57888887765431  34688999999999988

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=89.72  E-value=0.36  Score=29.49  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=19.8

Q ss_pred             CCCCeEEEEEeCCCceEecCCCC
Q 047073          194 SSKPQVEVHTIGTNTWRNIGDLP  216 (316)
Q Consensus       194 ~~~~~~~vy~s~t~~W~~~~~~~  216 (316)
                      .....+++|+..++.|+.++.||
T Consensus        25 ~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen   25 QPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             SBEEEEEEEETTTTEEEEEEEES
T ss_pred             ceeeeEEEEeCCCCEEEEcCCCC
Confidence            56889999999999999987654

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.51  E-value=2.3  Score=38.13  Aligned_cols=110  Identities=17%  Similarity=0.174  Sum_probs=69.6

Q ss_pred             CCeEEEEEeCCCceEecCCC-CceeccCCcceeeCC-eEEEEEecCCC--------------------------------
Q 047073          196 KPQVEVHTIGTNTWRNIGDL-PYVLNQPYYGAFLNS-ALHWYAHSHDK--------------------------------  241 (316)
Q Consensus       196 ~~~~~vy~s~t~~W~~~~~~-~~~~~~~~~~v~~~G-~lywl~~~~~~--------------------------------  241 (316)
                      ...+..|++.+++|..+... |.. .....++..++ .+|........                                
T Consensus       112 ~nd~Y~y~p~~nsW~kl~t~sP~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~  190 (381)
T COG3055         112 FNDAYRYDPSTNSWHKLDTRSPTG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAE  190 (381)
T ss_pred             eeeeEEecCCCChhheeccccccc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHH
Confidence            45678899999999988743 433 33344555555 67776654311                                


Q ss_pred             ---CccEEEEEeCCCceeeEec-CCCCccccCCCCccceEEEEECCeEEEEEccC---CCeEEEEEEeeCCCCCCeeeE
Q 047073          242 ---RTAFMCSFDLGDEQFRQFP-GPPTREYEKCRPINSISVGVSGGFLYLCDGFL---EPNLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       242 ---~~~~i~~fD~~~~~~~~i~-lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~---~~~~~vW~l~~~~~~~~W~~~  313 (316)
                         ....+++||+.+++|+..- . |....      +....+.-+++|.+|...-   -.+-.+|+.+-.++...|.++
T Consensus       191 dy~~n~ev~sy~p~~n~W~~~G~~-pf~~~------aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l  262 (381)
T COG3055         191 DYFFNKEVLSYDPSTNQWRNLGEN-PFYGN------AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKL  262 (381)
T ss_pred             HhcccccccccccccchhhhcCcC-cccCc------cCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeec
Confidence               0456899999999999884 6 65553      3333444566788887642   145556665443345568875

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=87.14  E-value=0.8  Score=28.27  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=14.4

Q ss_pred             CCCeEEEEEeCCCceEecCCCC
Q 047073          195 SKPQVEVHTIGTNTWRNIGDLP  216 (316)
Q Consensus       195 ~~~~~~vy~s~t~~W~~~~~~~  216 (316)
                      ....+++|+..+++|+.++.+|
T Consensus        27 ~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen   27 PLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             E---EEEEETTTTEEEE--SS-
T ss_pred             ccCCEEEEECCCCEEEECCCCC
Confidence            4678899999999999997665

>smart00612 Kelch Kelch domain

Probab=86.47  E-value=2.6  Score=25.12  Aligned_cols=17  Identities=6%  Similarity=0.147  Sum_probs=14.5

Q ss_pred             ccEEEEEeCCCceeeEe
Q 047073          243 TAFMCSFDLGDEQFRQF  259 (316)
Q Consensus       243 ~~~i~~fD~~~~~~~~i  259 (316)
                      ...+..||+.+++|..+
T Consensus        14 ~~~v~~yd~~~~~W~~~   30 (47)
T smart00612       14 LKSVEVYDPETNKWTPL   30 (47)
T ss_pred             eeeEEEECCCCCeEccC
Confidence            34689999999999876

>PLN02772 guanylate kinase

Probab=86.19  E-value=5.3  Score=36.82  Aligned_cols=75  Identities=9%  Similarity=0.033  Sum_probs=52.2

Q ss_pred             CcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEec---CCCCccccCCCCccceEEEEECCeEEEEEccCCCeEE
Q 047073          223 YYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQFP---GPPTREYEKCRPINSISVGVSGGFLYLCDGFLEPNLD  297 (316)
Q Consensus       223 ~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i~---lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~  297 (316)
                      ...|.+++.+|.+++.....  ...+.+||..+.+|..-.   -||...+      +...++.-+++|.++..-....=+
T Consensus        28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~------GhSa~v~~~~rilv~~~~~~~~~~  101 (398)
T PLN02772         28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK------GYSAVVLNKDRILVIKKGSAPDDS  101 (398)
T ss_pred             ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC------cceEEEECCceEEEEeCCCCCccc
Confidence            44788999999998765432  457999999999997542   2233332      233444457889888865566789


Q ss_pred             EEEEee
Q 047073          298 IWIMKK  303 (316)
Q Consensus       298 vW~l~~  303 (316)
                      +|.|+-
T Consensus       102 ~w~l~~  107 (398)
T PLN02772        102 IWFLEV  107 (398)
T ss_pred             eEEEEc
Confidence            999973

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=85.22  E-value=1.7  Score=26.86  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             CCCCeEEEEEeCCCceEecCCCC
Q 047073          194 SSKPQVEVHTIGTNTWRNIGDLP  216 (316)
Q Consensus       194 ~~~~~~~vy~s~t~~W~~~~~~~  216 (316)
                      .....+++|+.++.+|+.++.++
T Consensus        27 ~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen   27 SSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             cccceeEEEECCCCEEeecCCCC
Confidence            56888999999999999987653

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=85.21  E-value=6.2  Score=37.30  Aligned_cols=67  Identities=12%  Similarity=0.290  Sum_probs=36.7

Q ss_pred             CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCC--ceEecC
Q 047073          138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTN--TWRNIG  213 (316)
Q Consensus       138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~--~W~~~~  213 (316)
                      -+++.|+|-+|+||. +|.... .....+.++||-..  .-+|++|+....     ...+.-+.|.....  .|+.+.
T Consensus        56 iDELHvYNTatnqWf-~PavrG-DiPpgcAA~Gfvcd--GtrilvFGGMvE-----YGkYsNdLYELQasRWeWkrlk  124 (830)
T KOG4152|consen   56 IDELHVYNTATNQWF-APAVRG-DIPPGCAAFGFVCD--GTRILVFGGMVE-----YGKYSNDLYELQASRWEWKRLK  124 (830)
T ss_pred             hhhhhhhccccceee-cchhcC-CCCCchhhcceEec--CceEEEEccEee-----eccccchHHHhhhhhhhHhhcC
Confidence            458999999999998 444433 22222344444332  245666544332     22345556665544  566654

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=83.65  E-value=1.7  Score=26.85  Aligned_cols=25  Identities=44%  Similarity=0.662  Sum_probs=20.6

Q ss_pred             CCCCeEEEEEeCCCceEecCCCCce
Q 047073          194 SSKPQVEVHTIGTNTWRNIGDLPYV  218 (316)
Q Consensus       194 ~~~~~~~vy~s~t~~W~~~~~~~~~  218 (316)
                      .....+.+|+..++.|+.++.+|..
T Consensus        16 ~~~nd~~~~~~~~~~W~~~~~~P~~   40 (49)
T PF13415_consen   16 TRLNDVWVFDLDTNTWTRIGDLPPP   40 (49)
T ss_pred             CEecCEEEEECCCCEEEECCCCCCC
Confidence            4568899999999999999766654

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.84  E-value=22  Score=32.18  Aligned_cols=93  Identities=16%  Similarity=0.198  Sum_probs=53.8

Q ss_pred             CCCeEEEEEeCCCceEecCCCCceeccCCcceeeCCe-EEEEEecCCCC----ccEEEEEeCCCceeeEe-cCCCCcccc
Q 047073          195 SKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSA-LHWYAHSHDKR----TAFMCSFDLGDEQFRQF-PGPPTREYE  268 (316)
Q Consensus       195 ~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~----~~~i~~fD~~~~~~~~i-~lPP~~~~~  268 (316)
                      ....+-+|++.++.|+.....|...... ..+...|. +-.+..+-...    .-...-|.-...+|..+ .+|+...+.
T Consensus       194 ~n~ev~sy~p~~n~W~~~G~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~  272 (381)
T COG3055         194 FNKEVLSYDPSTNQWRNLGENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSN  272 (381)
T ss_pred             ccccccccccccchhhhcCcCcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCC
Confidence            3566778999999999998777655443 34445555 55554443221    23445556667899887 564332222


Q ss_pred             CCCCccceEEEEECCeEEEEE
Q 047073          269 KCRPINSISVGVSGGFLYLCD  289 (316)
Q Consensus       269 ~~~~~~~~~L~~~~G~L~lv~  289 (316)
                       ..+.....-+..+|.+.+..
T Consensus       273 -~eGvAGaf~G~s~~~~lv~G  292 (381)
T COG3055         273 -KEGVAGAFSGKSNGEVLVAG  292 (381)
T ss_pred             -ccccceeccceeCCeEEEec
Confidence             12334445566666665554

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=81.00  E-value=19  Score=31.18  Aligned_cols=76  Identities=13%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             CcceeeCCeEEEEEecCCCCccEEEEEeCCCceee-EecCCCCcccc-----CCCCccceEEEEECCeEEEEEccCC--C
Q 047073          223 YYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFR-QFPGPPTREYE-----KCRPINSISVGVSGGFLYLCDGFLE--P  294 (316)
Q Consensus       223 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~-~i~lPP~~~~~-----~~~~~~~~~L~~~~G~L~lv~~~~~--~  294 (316)
                      ...|+.||.+|+....    ...|+.||+.++.-. ...| |.....     .+.+.....+++-+.-|-++....+  .
T Consensus        72 tG~vVYngslYY~~~~----s~~IvkydL~t~~v~~~~~L-~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g  146 (250)
T PF02191_consen   72 TGHVVYNGSLYYNKYN----SRNIVKYDLTTRSVVARREL-PGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG  146 (250)
T ss_pred             CCeEEECCcEEEEecC----CceEEEEECcCCcEEEEEEC-CccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC
Confidence            3357789999998875    568999999999887 6678 433221     1123467788888888887776532  3


Q ss_pred             eEEEEEEee
Q 047073          295 NLDIWIMKK  303 (316)
Q Consensus       295 ~~~vW~l~~  303 (316)
                      .+-|=.|+.
T Consensus       147 ~ivvskld~  155 (250)
T PF02191_consen  147 NIVVSKLDP  155 (250)
T ss_pred             cEEEEeeCc
Confidence            577777753

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	4e-09
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	4e-07
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	9e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-06

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 36 NVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDP 76
           VS + LP  +L+ +FS L +  +L++  VCK W+ L SD 
Sbjct: 6  GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 49.5 bits (117), Expect = 4e-07
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 14 TRSKFQAKEAAKEEDGVLATNYNVSMEDLPLPILVDVFSRLPIKTILQI-KCVCKTWHSL 72
                 +E  +E +          + +LP P+L+ V + LP   ++Q  + VC  W  L
Sbjct: 26 GAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85

Query: 73 CSDPYFAKIHLAR 85
                  +   +
Sbjct: 86 VDGAPLWLLKCQQ 98

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 48.6 bits (115), Expect = 9e-07
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 38 SMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDP 76
          ++  LP+ + + + S L    + Q+      W+    DP
Sbjct: 4  TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP 42

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 36  NVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAK-IHLARAPFSIMILE 94
            VS + LP  +L+ +FS L +  +L++  VCK W+ L SD    + + L        +  
Sbjct: 6   GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTG 65

Query: 95  KFCKRIYTNSLVPLFTLNQGDKERLSLLS 123
           +   +       P   ++Q   E  S   
Sbjct: 66  RLLSQGVIAFRCPRSFMDQPLAEHFSPFR 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.07
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.03
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.98
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.94
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.94
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.89
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.86
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.86
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.86
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.84
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.83
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.79
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.79
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.78
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.69
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.66
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.46
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.44
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.36
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.25
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.89
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.51
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.37
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.31
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	89.03
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	85.07
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	84.19
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	83.29
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	82.45
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	81.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	81.41
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	80.49

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.07  E-value=4.7e-11  Score=76.53  Aligned_cols=45  Identities=36%  Similarity=0.631  Sum_probs=39.0

Q ss_pred             CCCCCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHH
Q 047073           36 NVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAK   80 (316)
Q Consensus        36 ~~~~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~   80 (316)
                      ...+..||+|++.+||.+||++++.++++|||+|+.++.++.|-+
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            445788999999999999999999999999999999999988754

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.03  E-value=1.2e-10  Score=100.89  Aligned_cols=51  Identities=22%  Similarity=0.493  Sum_probs=47.7

Q ss_pred             CCCCCCCCHHHHHHHHhcCCccccc-cccccchhhhhhcCCHHHHHHHHhcC
Q 047073           36 NVSMEDLPLPILVDVFSRLPIKTIL-QIKCVCKTWHSLCSDPYFAKIHLARA   86 (316)
Q Consensus        36 ~~~~~~LP~dll~~IL~rLP~~sl~-r~r~VcK~W~sli~s~~F~~~~~~~~   86 (316)
                      ...+..||+||+.+||++||+++|+ +|++|||+|++++.++.|.+.++.+.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            3567889999999999999999999 99999999999999999999998776

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.98  E-value=8.1e-08  Score=84.57  Aligned_cols=171  Identities=15%  Similarity=0.103  Sum_probs=113.5

Q ss_pred             eccCceEEeeeec------cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCC
Q 047073          123 SSCNGLICLHEFS------YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSK  196 (316)
Q Consensus       123 ~s~~Gll~~~~~~------~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~  196 (316)
                      ...+|.|++.++.      .....++++||.|++|..++++|. .+...... .++     -+|+.+.....+.   ...
T Consensus        95 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~-~~~-----~~iyv~GG~~~~~---~~~  164 (315)
T 4asc_A           95 GEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY-VVYGHTVL-SHM-----DLVYVIGGKGSDR---KCL  164 (315)
T ss_dssp             EEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE-EET-----TEEEEECCBCTTS---CBC
T ss_pred             EEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC-cccceeEE-EEC-----CEEEEEeCCCCCC---ccc
Confidence            3446776655431      114579999999999999998876 33332222 222     1455554331211   446


Q ss_pred             CeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccc
Q 047073          197 PQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINS  275 (316)
Q Consensus       197 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~  275 (316)
                      ..+++|+..+++|+.++.+|... .....+.++|.+|.+++..... ...+.+||+++++|+.++-.|...       ..
T Consensus       165 ~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-------~~  236 (315)
T 4asc_A          165 NKMCVYDPKKFEWKELAPMQTAR-SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER-------SS  236 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC-------BS
T ss_pred             ceEEEEeCCCCeEEECCCCCCch-hceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc-------cc
Confidence            78999999999999998776543 2334677899999998764332 347999999999999994324433       34


Q ss_pred             eEEEEECCeEEEEEccCC-----------CeEEEEEEeeCCCCCCeeeE
Q 047073          276 ISVGVSGGFLYLCDGFLE-----------PNLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       276 ~~L~~~~G~L~lv~~~~~-----------~~~~vW~l~~~~~~~~W~~~  313 (316)
                      ..++..+|+|+++.....           ..-+||+.+- + +..|++.
T Consensus       237 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~-~-~~~W~~~  283 (315)
T 4asc_A          237 LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNE-E-EKKWEGV  283 (315)
T ss_dssp             CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET-T-TTEEEEE
T ss_pred             eeEEEECCEEEEECCccccCcCCccccccccCcEEEecC-C-CChhhhh
Confidence            467788999999876421           2346888853 2 3469875

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.94  E-value=2e-07  Score=82.17  Aligned_cols=155  Identities=13%  Similarity=0.150  Sum_probs=102.8

Q ss_pred             eEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCCCcee
Q 047073          140 IISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPYVL  219 (316)
Q Consensus       140 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~~  219 (316)
                      .++++||.|++|..+|++|. .+...... .+    +. +|+.++.....+.  .....+++|+..+++|+.++.+|...
T Consensus        79 ~~~~~d~~~~~W~~~~~~p~-~r~~~~~~-~~----~~-~iyv~GG~~~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r  149 (318)
T 2woz_A           79 YFFQLDNVSSEWVGLPPLPS-ARCLFGLG-EV----DD-KIYVVAGKDLQTE--ASLDSVLCYDPVAAKWSEVKNLPIKV  149 (318)
T ss_dssp             EEEEEETTTTEEEECSCBSS-CBCSCEEE-EE----TT-EEEEEEEEBTTTC--CEEEEEEEEETTTTEEEEECCCSSCE
T ss_pred             cEEEEeCCCCcEEECCCCCc-cccccceE-EE----CC-EEEEEcCccCCCC--cccceEEEEeCCCCCEeECCCCCCcc
Confidence            38999999999999998876 33332221 12    12 4555544321111  34567999999999999998777654


Q ss_pred             ccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccCC--Ce
Q 047073          220 NQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLE--PN  295 (316)
Q Consensus       220 ~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~--~~  295 (316)
                      . ....+.++|.+|.+++.....  ...+..||+.+++|+.++-.|...       .....+..+|+|+++....+  ..
T Consensus       150 ~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-------~~~~~~~~~~~iyv~GG~~~~~~~  221 (318)
T 2woz_A          150 Y-GHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR-------SMFGVAIHKGKIVIAGGVTEDGLS  221 (318)
T ss_dssp             E-SCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC-------BSCEEEEETTEEEEEEEEETTEEE
T ss_pred             c-ccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc-------ccceEEEECCEEEEEcCcCCCCcc
Confidence            3 233577999999998753221  346999999999999984224333       33456778999999876432  23


Q ss_pred             EEEEEEeeCCCCCCeeeE
Q 047073          296 LDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       296 ~~vW~l~~~~~~~~W~~~  313 (316)
                      -++|+.+- . +..|++.
T Consensus       222 ~~~~~yd~-~-~~~W~~~  237 (318)
T 2woz_A          222 ASVEAFDL-K-TNKWEVM  237 (318)
T ss_dssp             EEEEEEET-T-TCCEEEC
T ss_pred             ceEEEEEC-C-CCeEEEC
Confidence            46777743 2 3469875

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.94  E-value=3e-07  Score=80.87  Aligned_cols=154  Identities=13%  Similarity=0.119  Sum_probs=104.5

Q ss_pred             eEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeec-ccccCCCCCeEEEEEeCCCceEecCCCCce
Q 047073          140 IISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKD-QAAISSSKPQVEVHTIGTNTWRNIGDLPYV  218 (316)
Q Consensus       140 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~-~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~  218 (316)
                      .++++||.|++|..+|++|. .+...... .+    +. +|+.++.... ++.  .....+++|+..+++|+.++.+|..
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~-~r~~~~~~-~~----~~-~lyv~GG~~~~~~~--~~~~~~~~~d~~~~~W~~~~~~p~~  138 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPS-PRCLFGLG-EA----LN-SIYVVGGREIKDGE--RCLDSVMCYDRLSFKWGESDPLPYV  138 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSS-CEESCEEE-EE----TT-EEEEECCEESSTTC--CBCCCEEEEETTTTEEEECCCCSSC
T ss_pred             ceEEecCCCCeEEECCCCCc-chhceeEE-EE----CC-EEEEEeCCcCCCCC--cccceEEEECCCCCcEeECCCCCCc
Confidence            48999999999999999876 33332221 11    12 4555543321 111  4577899999999999999877654


Q ss_pred             eccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEe-cCCCCccccCCCCccceEEEEECCeEEEEEccCC--
Q 047073          219 LNQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSISVGVSGGFLYLCDGFLE--  293 (316)
Q Consensus       219 ~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~--  293 (316)
                      . .....+.++|.+|.+++.....  ...+.+||+.+++|+.+ ++ |...       .....+..+|+|+++....+  
T Consensus       139 r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r-------~~~~~~~~~~~iyv~GG~~~~~  209 (315)
T 4asc_A          139 V-YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM-QTAR-------SLFGATVHDGRIIVAAGVTDTG  209 (315)
T ss_dssp             C-BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC-SSCC-------BSCEEEEETTEEEEEEEECSSS
T ss_pred             c-cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC-CCch-------hceEEEEECCEEEEEeccCCCC
Confidence            3 2333677999999998763221  45799999999999988 34 4332       34456788999999886533  


Q ss_pred             CeEEEEEEeeCCCCCCeeeE
Q 047073          294 PNLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       294 ~~~~vW~l~~~~~~~~W~~~  313 (316)
                      ..-++|+.+- . +..|+..
T Consensus       210 ~~~~~~~yd~-~-~~~W~~~  227 (315)
T 4asc_A          210 LTSSAEVYSI-T-DNKWAPF  227 (315)
T ss_dssp             EEEEEEEEET-T-TTEEEEE
T ss_pred             ccceEEEEEC-C-CCeEEEC
Confidence            2446788753 2 3469875

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.89  E-value=2.2e-07  Score=81.84  Aligned_cols=171  Identities=16%  Similarity=0.190  Sum_probs=111.8

Q ss_pred             eccCceEEeeeecc-----CCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCC
Q 047073          123 SSCNGLICLHEFSY-----KQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKP  197 (316)
Q Consensus       123 ~s~~Gll~~~~~~~-----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~  197 (316)
                      ...+|.|.+.++..     ....++++||.|++|..++++|. .+....... ++     -+|+.+.....+.   ....
T Consensus       106 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~-----~~iyv~GG~~~~~---~~~~  175 (318)
T 2woz_A          106 GEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-KVYGHNVIS-HN-----GMIYCLGGKTDDK---KCTN  175 (318)
T ss_dssp             EEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-CEESCEEEE-ET-----TEEEEECCEESSS---CBCC
T ss_pred             EEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-cccccEEEE-EC-----CEEEEEcCCCCCC---Cccc
Confidence            34467776665321     12579999999999999998876 333322221 21     2455554332221   3467


Q ss_pred             eEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccce
Q 047073          198 QVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSI  276 (316)
Q Consensus       198 ~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~  276 (316)
                      .+++|+..+++|+.++.+|.... ....+.++|.+|.+++..... ...+.+||+++++|+.++-.|...       ...
T Consensus       176 ~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-------~~~  247 (318)
T 2woz_A          176 RVFIYNPKKGDWKDLAPMKTPRS-MFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQER-------SSI  247 (318)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCC-------BSC
T ss_pred             eEEEEcCCCCEEEECCCCCCCcc-cceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcc-------cce
Confidence            89999999999999987765432 233577899999998754321 346889999999999983224433       334


Q ss_pred             EEEEECCeEEEEEccCC-----------CeEEEEEEeeCCCCCCeeeE
Q 047073          277 SVGVSGGFLYLCDGFLE-----------PNLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       277 ~L~~~~G~L~lv~~~~~-----------~~~~vW~l~~~~~~~~W~~~  313 (316)
                      .++..+|+|+++.....           ..-++|+.+- . +..|++.
T Consensus       248 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~-~-~~~W~~~  293 (318)
T 2woz_A          248 SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED-D-KKEWAGM  293 (318)
T ss_dssp             EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEET-T-TTEEEEE
T ss_pred             EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeC-C-CCEehhh
Confidence            67788999999875421           2457888853 2 3469875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.86  E-value=3.3e-07  Score=80.18  Aligned_cols=174  Identities=11%  Similarity=0.098  Sum_probs=112.3

Q ss_pred             eccCceEEeeeec----cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCe
Q 047073          123 SSCNGLICLHEFS----YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQ  198 (316)
Q Consensus       123 ~s~~Gll~~~~~~----~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~  198 (316)
                      ...+|.|++..+.    .....++++||.|++|..+|+++. .+...... .+    +. +|+.+...............
T Consensus        98 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~-~~----~~-~iyv~GG~~~~~~~~~~~~~  170 (306)
T 3ii7_A           98 CAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT-QRCSHGMV-EA----NG-LIYVCGGSLGNNVSGRVLNS  170 (306)
T ss_dssp             EEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EE----TT-EEEEECCEESCTTTCEECCC
T ss_pred             EEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC-CcceeEEE-EE----CC-EEEEECCCCCCCCcccccce
Confidence            3446777665432    124579999999999999998876 33332221 22    12 45555433222100011678


Q ss_pred             EEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEe-cCCCCccccCCCCccce
Q 047073          199 VEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSI  276 (316)
Q Consensus       199 ~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~  276 (316)
                      +++|+..++.|+.++.+|.... ....+.++|.||.+++..... ...+.+||+.+++|+.+ ++ |...       ...
T Consensus       171 ~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r-------~~~  241 (306)
T 3ii7_A          171 CEVYDPATETWTELCPMIEARK-NHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM-PWKG-------VTV  241 (306)
T ss_dssp             EEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC-SCCB-------SCC
T ss_pred             EEEeCCCCCeEEECCCccchhh-cceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC-CCCc-------cce
Confidence            9999999999999987765432 334677899999997653221 34699999999999998 44 4433       344


Q ss_pred             EEEEECCeEEEEEccCC--CeEEEEEEeeCCCCCCeeeEE
Q 047073          277 SVGVSGGFLYLCDGFLE--PNLDIWIMKKYGVKESWTKEF  314 (316)
Q Consensus       277 ~L~~~~G~L~lv~~~~~--~~~~vW~l~~~~~~~~W~~~~  314 (316)
                      .++..+|+|+++....+  ..-++|+.+- . +.+|+..-
T Consensus       242 ~~~~~~~~i~v~GG~~~~~~~~~~~~yd~-~-~~~W~~~~  279 (306)
T 3ii7_A          242 KCAAVGSIVYVLAGFQGVGRLGHILEYNT-E-TDKWVANS  279 (306)
T ss_dssp             EEEEETTEEEEEECBCSSSBCCEEEEEET-T-TTEEEEEE
T ss_pred             eEEEECCEEEEEeCcCCCeeeeeEEEEcC-C-CCeEEeCC
Confidence            66778999999987532  3346777753 2 34698753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.86  E-value=3.6e-07  Score=79.80  Aligned_cols=169  Identities=12%  Similarity=0.155  Sum_probs=109.7

Q ss_pred             ccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEE
Q 047073          124 SCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVE  200 (316)
Q Consensus       124 s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~  200 (316)
                      ..+|.|++.++.   .....++++||.|++|..+|+++. .+...... .++    . +|+.+......    .....++
T Consensus        59 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~-~~~----~-~iyv~GG~~~~----~~~~~~~  127 (302)
T 2xn4_A           59 YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD-RRSTLGAA-VLN----G-LLYAVGGFDGS----TGLSSVE  127 (302)
T ss_dssp             EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EET----T-EEEEEEEECSS----CEEEEEE
T ss_pred             EECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc-cccceEEE-EEC----C-EEEEEcCCCCC----ccCceEE
Confidence            346666655431   114579999999999999998876 33332222 121    2 45555443221    2346799


Q ss_pred             EEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC---ccEEEEEeCCCceeeEecCCCCccccCCCCccceE
Q 047073          201 VHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR---TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSIS  277 (316)
Q Consensus       201 vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~  277 (316)
                      +|+..++.|+.++.+|... .....+.++|.+|.+++.....   ...+..||+.+++|+.++-.|...       ....
T Consensus       128 ~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-------~~~~  199 (302)
T 2xn4_A          128 AYNIKSNEWFHVAPMNTRR-SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR-------SGAG  199 (302)
T ss_dssp             EEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC-------BSCE
T ss_pred             EEeCCCCeEeecCCCCCcc-cCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc-------cccc
Confidence            9999999999998776543 2233577899999997653221   346999999999999983224333       3346


Q ss_pred             EEEECCeEEEEEccCC--CeEEEEEEeeCCCCCCeeeE
Q 047073          278 VGVSGGFLYLCDGFLE--PNLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       278 L~~~~G~L~lv~~~~~--~~~~vW~l~~~~~~~~W~~~  313 (316)
                      ++..+|+|+++....+  ..-++|+.+- . +..|++.
T Consensus       200 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~-~-~~~W~~~  235 (302)
T 2xn4_A          200 VGVLNNLLYAVGGHDGPLVRKSVEVYDP-T-TNAWRQV  235 (302)
T ss_dssp             EEEETTEEEEECCBSSSSBCCCEEEEET-T-TTEEEEE
T ss_pred             EEEECCEEEEECCCCCCcccceEEEEeC-C-CCCEeeC
Confidence            6788999999986532  1235777743 2 3469875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.86  E-value=4.8e-07  Score=78.86  Aligned_cols=171  Identities=12%  Similarity=0.079  Sum_probs=112.5

Q ss_pred             eccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeE
Q 047073          123 SSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQV  199 (316)
Q Consensus       123 ~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~  199 (316)
                      ...+|.|.+..+.   .....++++||.|++|..+++++. .+.... ...++     -+|+.+......    .....+
T Consensus       109 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~-~~~~~-----~~iyv~GG~~~~----~~~~~~  177 (301)
T 2vpj_A          109 TTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAG-LVVAS-----GVIYCLGGYDGL----NILNSV  177 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCE-EEEET-----TEEEEECCBCSS----CBCCCE
T ss_pred             EEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-Ccccce-EEEEC-----CEEEEECCCCCC----cccceE
Confidence            3347777666531   114579999999999999998765 333222 22221     245554432211    346789


Q ss_pred             EEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccceEE
Q 047073          200 EVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISV  278 (316)
Q Consensus       200 ~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L  278 (316)
                      ++|+..++.|+.++.+|.... ....+.++|.+|.+++..... ...+..||+++++|..++-.|...       .....
T Consensus       178 ~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r-------~~~~~  249 (301)
T 2vpj_A          178 EKYDPHTGHWTNVTPMATKRS-GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR-------CYVGA  249 (301)
T ss_dssp             EEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC-------BSCEE
T ss_pred             EEEeCCCCcEEeCCCCCcccc-cceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc-------cceeE
Confidence            999999999999987665432 334677899999998764322 357999999999999984324433       33456


Q ss_pred             EEECCeEEEEEccCC--CeEEEEEEeeCCCCCCeeeEE
Q 047073          279 GVSGGFLYLCDGFLE--PNLDIWIMKKYGVKESWTKEF  314 (316)
Q Consensus       279 ~~~~G~L~lv~~~~~--~~~~vW~l~~~~~~~~W~~~~  314 (316)
                      +..+|+|+++....+  ..-+||+.+- . +..|+..-
T Consensus       250 ~~~~~~i~v~GG~~~~~~~~~v~~yd~-~-~~~W~~~~  285 (301)
T 2vpj_A          250 TVLRGRLYAIAGYDGNSLLSSIECYDP-I-IDSWEVVT  285 (301)
T ss_dssp             EEETTEEEEECCBCSSSBEEEEEEEET-T-TTEEEEEE
T ss_pred             EEECCEEEEEcCcCCCcccccEEEEcC-C-CCeEEEcC
Confidence            778999999886532  3367888853 2 34698764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.84  E-value=3.5e-07  Score=79.87  Aligned_cols=172  Identities=14%  Similarity=0.080  Sum_probs=110.6

Q ss_pred             eccCceEEeeeecc---CCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeE
Q 047073          123 SSCNGLICLHEFSY---KQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQV  199 (316)
Q Consensus       123 ~s~~Gll~~~~~~~---~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~  199 (316)
                      ...+|.+++..+..   ....+.++||.|++|..+++++. .+..... ..++     -+|+.+........  .....+
T Consensus       105 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~-~~~~-----~~iyv~GG~~~~~~--~~~~~~  175 (302)
T 2xn4_A          105 AVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT-RRSSVGV-GVVG-----GLLYAVGGYDVASR--QCLSTV  175 (302)
T ss_dssp             EEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS-CCBSCEE-EEET-----TEEEEECCEETTTT--EECCCE
T ss_pred             EEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC-cccCceE-EEEC-----CEEEEEeCCCCCCC--ccccEE
Confidence            33477776665321   13578999999999999998876 3333221 2221     24555543322211  225679


Q ss_pred             EEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccceEE
Q 047073          200 EVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISV  278 (316)
Q Consensus       200 ~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L  278 (316)
                      ++|+..+++|+.++.+|.... ....+.++|.+|.+++..... ...+..||+++++|+.++-.|...       ....+
T Consensus       176 ~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r-------~~~~~  247 (302)
T 2xn4_A          176 ECYNATTNEWTYIAEMSTRRS-GAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR-------RNAGV  247 (302)
T ss_dssp             EEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC-------BSCEE
T ss_pred             EEEeCCCCcEEECCCCccccc-cccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc-------ccCeE
Confidence            999999999999987765432 234677899999998654322 347999999999999984324333       33456


Q ss_pred             EEECCeEEEEEccCC--CeEEEEEEeeCCCCCCeeeE
Q 047073          279 GVSGGFLYLCDGFLE--PNLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       279 ~~~~G~L~lv~~~~~--~~~~vW~l~~~~~~~~W~~~  313 (316)
                      +..+|+|+++.....  ..-+||+.+- + +..|+..
T Consensus       248 ~~~~~~i~v~GG~~~~~~~~~v~~yd~-~-~~~W~~~  282 (302)
T 2xn4_A          248 CAVNGLLYVVGGDDGSCNLASVEYYNP-T-TDKWTVV  282 (302)
T ss_dssp             EEETTEEEEECCBCSSSBCCCEEEEET-T-TTEEEEC
T ss_pred             EEECCEEEEECCcCCCcccccEEEEcC-C-CCeEEEC
Confidence            778999999876532  2345666643 2 3469864

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.83  E-value=7.9e-07  Score=77.95  Aligned_cols=171  Identities=11%  Similarity=0.098  Sum_probs=111.9

Q ss_pred             eccCceEEeeeec---cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeE
Q 047073          123 SSCNGLICLHEFS---YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQV  199 (316)
Q Consensus       123 ~s~~Gll~~~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~  199 (316)
                      ...+|-|++..+.   .....+.++||.|++|..+++++. .+.... ...++     -+|+.+......    .....+
T Consensus       118 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~-~~~~~-----~~iyv~GG~~~~----~~~~~~  186 (308)
T 1zgk_A          118 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-RRIGVG-VAVLN-----RLLYAVGGFDGT----NRLNSA  186 (308)
T ss_dssp             EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-CCBSCE-EEEET-----TEEEEECCBCSS----CBCCCE
T ss_pred             EEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-cccceE-EEEEC-----CEEEEEeCCCCC----CcCceE
Confidence            3346777665431   114579999999999999998876 333322 22221     245555432221    236789


Q ss_pred             EEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccceEE
Q 047073          200 EVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISV  278 (316)
Q Consensus       200 ~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L  278 (316)
                      ++|+..++.|+.++.+|.... ....+.++|.||.+++..... ...+..||+++++|+.++-.|...       ....+
T Consensus       187 ~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r-------~~~~~  258 (308)
T 1zgk_A          187 ECYYPERNEWRMITAMNTIRS-GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR-------SALGI  258 (308)
T ss_dssp             EEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC-------BSCEE
T ss_pred             EEEeCCCCeEeeCCCCCCccc-cceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc-------cceEE
Confidence            999999999999987765432 234677899999998654221 357999999999999884324333       33466


Q ss_pred             EEECCeEEEEEccCC--CeEEEEEEeeCCCCCCeeeEE
Q 047073          279 GVSGGFLYLCDGFLE--PNLDIWIMKKYGVKESWTKEF  314 (316)
Q Consensus       279 ~~~~G~L~lv~~~~~--~~~~vW~l~~~~~~~~W~~~~  314 (316)
                      +..+|+|+++.....  ..-++|+++-.  +..|++.-
T Consensus       259 ~~~~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~  294 (308)
T 1zgk_A          259 TVHQGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVT  294 (308)
T ss_dssp             EEETTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEE
T ss_pred             EEECCEEEEEcCcCCCcccceEEEEcCC--CCEEeecC
Confidence            778999999876432  34467777532  34698763

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.79  E-value=4.4e-07  Score=79.36  Aligned_cols=165  Identities=11%  Similarity=0.038  Sum_probs=108.5

Q ss_pred             CceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeC
Q 047073          126 NGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIG  205 (316)
Q Consensus       126 ~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~  205 (316)
                      .+.|++.++......++++||.+++|..++++|. .+...... .+    +. +|+.+.... .    .....+++|+..
T Consensus        11 ~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~-~~----~~-~lyv~GG~~-~----~~~~~~~~~d~~   78 (306)
T 3ii7_A           11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFE-KRRDAACV-FW----DN-VVYILGGSQ-L----FPIKRMDCYNVV   78 (306)
T ss_dssp             CCEEEEEECCSSTTSEEEEETTTTEEEECCCCSC-CCBSCEEE-EE----TT-EEEEECCBS-S----SBCCEEEEEETT
T ss_pred             cceEEEEeCCCCCceEEEecCCCCCEecCCCCCc-ccceeEEE-EE----CC-EEEEEeCCC-C----CCcceEEEEeCC
Confidence            3555444422225689999999999999998876 33332222 12    12 344443322 1    456889999999


Q ss_pred             CCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEe-cCCCCccccCCCCccceEEEEEC
Q 047073          206 TNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSISVGVSG  282 (316)
Q Consensus       206 t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~~  282 (316)
                      +++|+.++.+|.... ....+.++|.+|.+++.....  ...+..||+.+++|+.+ ++ |...       .....+..+
T Consensus        79 ~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r-------~~~~~~~~~  149 (306)
T 3ii7_A           79 KDSWYSKLGPPTPRD-SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM-LTQR-------CSHGMVEAN  149 (306)
T ss_dssp             TTEEEEEECCSSCCB-SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC-SSCC-------BSCEEEEET
T ss_pred             CCeEEECCCCCcccc-ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC-cCCc-------ceeEEEEEC
Confidence            999999987765432 233567899999998764221  45799999999999998 44 4333       334567789


Q ss_pred             CeEEEEEccCC--C----eEEEEEEeeCCCCCCeeeE
Q 047073          283 GFLYLCDGFLE--P----NLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       283 G~L~lv~~~~~--~----~~~vW~l~~~~~~~~W~~~  313 (316)
                      |+|+++.....  .    .-++|+.+- . +..|++.
T Consensus       150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~-~-~~~W~~~  184 (306)
T 3ii7_A          150 GLIYVCGGSLGNNVSGRVLNSCEVYDP-A-TETWTEL  184 (306)
T ss_dssp             TEEEEECCEESCTTTCEECCCEEEEET-T-TTEEEEE
T ss_pred             CEEEEECCCCCCCCcccccceEEEeCC-C-CCeEEEC
Confidence            99999876422  1    456777753 2 3469875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.79  E-value=7e-07  Score=77.83  Aligned_cols=169  Identities=9%  Similarity=0.075  Sum_probs=109.1

Q ss_pred             ccCceEEeeeec---cCCceEEEEcCCCCc---eEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCC
Q 047073          124 SCNGLICLHEFS---YKQDIISVCNPILGD---HLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKP  197 (316)
Q Consensus       124 s~~Gll~~~~~~---~~~~~~~v~NP~T~~---~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~  197 (316)
                      ..+|.|++.++.   .....++++||.|++   |..+++++. .+...... .++     -+|+.+......    ....
T Consensus        60 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~-~r~~~~~~-~~~-----~~lyv~GG~~~~----~~~~  128 (301)
T 2vpj_A           60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV-RRGLAGAT-TLG-----DMIYVSGGFDGS----RRHT  128 (301)
T ss_dssp             EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS-CCBSCEEE-EET-----TEEEEECCBCSS----CBCC
T ss_pred             EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC-CccceeEE-EEC-----CEEEEEcccCCC----cccc
Confidence            346666555421   114579999999999   999998876 33332221 221     245555432221    3367


Q ss_pred             eEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccce
Q 047073          198 QVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSI  276 (316)
Q Consensus       198 ~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~  276 (316)
                      .+++|+..+++|+.++.+|... .....+.++|.+|.+++..... ...+.+||+.+++|+.++-.|...       ...
T Consensus       129 ~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~  200 (301)
T 2vpj_A          129 SMERYDPNIDQWSMLGDMQTAR-EGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR-------SGA  200 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSCC-BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC-------BSC
T ss_pred             eEEEEcCCCCeEEECCCCCCCc-ccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc-------ccc
Confidence            8999999999999987666443 2233677899999997653222 457999999999999984224333       344


Q ss_pred             EEEEECCeEEEEEccCC--CeEEEEEEeeCCCCCCeeeE
Q 047073          277 SVGVSGGFLYLCDGFLE--PNLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       277 ~L~~~~G~L~lv~~~~~--~~~~vW~l~~~~~~~~W~~~  313 (316)
                      .++..+|+|+++.....  ..-++|+++- . +..|++.
T Consensus       201 ~~~~~~~~i~v~GG~~~~~~~~~v~~yd~-~-~~~W~~~  237 (301)
T 2vpj_A          201 GVALLNDHIYVVGGFDGTAHLSSVEAYNI-R-TDSWTTV  237 (301)
T ss_dssp             EEEEETTEEEEECCBCSSSBCCCEEEEET-T-TTEEEEE
T ss_pred             eEEEECCEEEEEeCCCCCcccceEEEEeC-C-CCcEEEC
Confidence            66778999999886532  1345666643 2 3469875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.78  E-value=4e-07  Score=79.85  Aligned_cols=155  Identities=12%  Similarity=0.046  Sum_probs=103.3

Q ss_pred             CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecCCCCc
Q 047073          138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIGDLPY  217 (316)
Q Consensus       138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~  217 (316)
                      ...++++||.|++|..+|+++. .+...... .++     -+|+.+......    .....+++|+..+++|+.++.+|.
T Consensus        89 ~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~-~~~-----~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~~~~~~p~  157 (308)
T 1zgk_A           89 SSALDCYNPMTNQWSPCAPMSV-PRNRIGVG-VID-----GHIYAVGGSHGC----IHHNSVERYEPERDEWHLVAPMLT  157 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSS-CCBTCEEE-EET-----TEEEEECCEETT----EECCCEEEEETTTTEEEECCCCSS
T ss_pred             cceEEEECCCCCeEeECCCCCc-CccccEEE-EEC-----CEEEEEcCCCCC----cccccEEEECCCCCeEeECCCCCc
Confidence            3579999999999999998876 33332221 221     145555432222    235779999999999999987765


Q ss_pred             eeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccCC--C
Q 047073          218 VLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLE--P  294 (316)
Q Consensus       218 ~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~--~  294 (316)
                      ... ....+.++|.+|.+++..... ...+..||+.+++|+.++-.|...       .....+..+|+|+++....+  .
T Consensus       158 ~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-------~~~~~~~~~~~iyv~GG~~~~~~  229 (308)
T 1zgk_A          158 RRI-GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR-------SGAGVCVLHNCIYAAGGYDGQDQ  229 (308)
T ss_dssp             CCB-SCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-------BSCEEEEETTEEEEECCBCSSSB
T ss_pred             ccc-ceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcc-------ccceEEEECCEEEEEeCCCCCCc
Confidence            432 233677899999997754322 357999999999999884224332       33456778999999886532  2


Q ss_pred             eEEEEEEeeCCCCCCeeeE
Q 047073          295 NLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       295 ~~~vW~l~~~~~~~~W~~~  313 (316)
                      .-++|+++- . +..|++.
T Consensus       230 ~~~v~~yd~-~-~~~W~~~  246 (308)
T 1zgk_A          230 LNSVERYDV-E-TETWTFV  246 (308)
T ss_dssp             CCCEEEEET-T-TTEEEEC
T ss_pred             cceEEEEeC-C-CCcEEEC
Confidence            456777743 2 3469864

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.69  E-value=1.2e-06  Score=78.42  Aligned_cols=172  Identities=12%  Similarity=0.033  Sum_probs=106.5

Q ss_pred             ccCceEEeeeeccCCceEEEEcCC--CCceEecCCCC-CCCccCceEEEEEeCCCCCeEEEEEEEe-e--cccccCCCCC
Q 047073          124 SCNGLICLHEFSYKQDIISVCNPI--LGDHLVLPQLK-RKNVATRIRGFGYNHCTNQYKVIQILSY-K--DQAAISSSKP  197 (316)
Q Consensus       124 s~~Gll~~~~~~~~~~~~~v~NP~--T~~~~~lP~~~-~~~~~~~~~~~~~d~~~~~~kvv~~~~~-~--~~~~~~~~~~  197 (316)
                      ..+|.|.+..+ ....+++++||.  +++|..+|++| . .+..... ..++    . +|+.+... .  .+..  ....
T Consensus        17 ~~~~~iyv~GG-~~~~~~~~~d~~~~~~~W~~~~~~p~~-~R~~~~~-~~~~----~-~lyv~GG~~~~~~~~~--~~~~   86 (357)
T 2uvk_A           17 IDNDTVYIGLG-SAGTAWYKLDTQAKDKKWTALAAFPGG-PRDQATS-AFID----G-NLYVFGGIGKNSEGLT--QVFN   86 (357)
T ss_dssp             EETTEEEEECG-GGTTCEEEEETTSSSCCEEECCCCTTC-CCBSCEE-EEET----T-EEEEECCEEECTTSCE--EECC
T ss_pred             EECCEEEEEeC-cCCCeEEEEccccCCCCeeECCCCCCC-cCccceE-EEEC----C-EEEEEcCCCCCCCccc--eeec
Confidence            33777766653 225689999998  49999999987 4 3332222 2221    1 45555433 1  1111  3467


Q ss_pred             eEEEEEeCCCceEecCCCC-ceeccCCcceeeCCeEEEEEecCCC-----------------------------------
Q 047073          198 QVEVHTIGTNTWRNIGDLP-YVLNQPYYGAFLNSALHWYAHSHDK-----------------------------------  241 (316)
Q Consensus       198 ~~~vy~s~t~~W~~~~~~~-~~~~~~~~~v~~~G~lywl~~~~~~-----------------------------------  241 (316)
                      .+++|+..+++|+.+..++ ... .....+.++|.+|.+++....                                   
T Consensus        87 ~v~~yd~~~~~W~~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (357)
T 2uvk_A           87 DVHKYNPKTNSWVKLMSHAPMGM-AGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYF  165 (357)
T ss_dssp             CEEEEETTTTEEEECSCCCSSCC-SSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGC
T ss_pred             cEEEEeCCCCcEEECCCCCCccc-ccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccC
Confidence            8999999999999998766 221 222256699999999875311                                   


Q ss_pred             CccEEEEEeCCCceeeEe-cCCCCccccCCCCccceEEEEECCeEEEEEccCC---CeEEEEEEeeCCCCCCeeeE
Q 047073          242 RTAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSISVGVSGGFLYLCDGFLE---PNLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       242 ~~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~---~~~~vW~l~~~~~~~~W~~~  313 (316)
                      ....+.+||+.+++|+.+ ++ |....      ....++..+|+|+++....+   ..-++|.++-+-.+..|+++
T Consensus       166 ~~~~v~~yd~~~~~W~~~~~~-p~~~~------~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~  234 (357)
T 2uvk_A          166 FNKFLLSFDPSTQQWSYAGES-PWYGT------AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL  234 (357)
T ss_dssp             CCCEEEEEETTTTEEEEEEEC-SSCCC------BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEEC
T ss_pred             CcccEEEEeCCCCcEEECCCC-CCCCc------ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEec
Confidence            014799999999999998 55 32221      22466788999999865321   23456666421123468864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.66  E-value=6.6e-06  Score=75.47  Aligned_cols=50  Identities=24%  Similarity=0.325  Sum_probs=44.7

Q ss_pred             CCCCCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHHHHhc
Q 047073           36 NVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLAR   85 (316)
Q Consensus        36 ~~~~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~~~~~   85 (316)
                      ...+..||+|++..||..|++++|.++..|||+|+.++.++.+-+..+..
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~   65 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE   65 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTT
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheee
Confidence            45577899999999999999999999999999999999999888776643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.46  E-value=3.2e-06  Score=77.45  Aligned_cols=46  Identities=28%  Similarity=0.444  Sum_probs=39.8

Q ss_pred             CCCCCCHH----HHHHHHhcCCccccccccccchhhhhhcCCHHHHHHHH
Q 047073           38 SMEDLPLP----ILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHL   83 (316)
Q Consensus        38 ~~~~LP~d----ll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~~~   83 (316)
                      .+..||+|    |+..||+.|++++|.++.+|||+|+.++.++.+-+..+
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~   59 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI   59 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            34569999    99999999999999999999999999998876655444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.44  E-value=8.1e-05  Score=68.32  Aligned_cols=45  Identities=20%  Similarity=0.399  Sum_probs=39.3

Q ss_pred             CCCCCCHHHHHHHHhcCCccccccccccchhhhhhcCC-HHHHHHH
Q 047073           38 SMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSD-PYFAKIH   82 (316)
Q Consensus        38 ~~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s-~~F~~~~   82 (316)
                      .+..||+|++.+||+.||+++|.++..|||+|+.++.+ +..-+.+
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~   59 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   59 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            35579999999999999999999999999999999998 6654443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.36  E-value=1e-05  Score=72.12  Aligned_cols=156  Identities=8%  Similarity=-0.066  Sum_probs=94.1

Q ss_pred             ceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEe--CCCceEecCCCC
Q 047073          139 DIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTI--GTNTWRNIGDLP  216 (316)
Q Consensus       139 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s--~t~~W~~~~~~~  216 (316)
                      ..+.++||.|++|..++++|....... ....++     =+|+.+......+   .....+++|+.  .++.|+.+..++
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~-~~~~~~-----~~iyv~GG~~~~~---~~~~~v~~~d~d~~~~~W~~~~~~~  238 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGA-AVVNKG-----DKTWLINGEAKPG---LRTDAVFELDFTGNNLKWNKLAPVS  238 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSC-EEEEET-----TEEEEECCEEETT---EECCCEEEEECC---CEEEECCCSS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccc-cEEEEC-----CEEEEEeeecCCC---cccCceEEEEecCCCCcEEecCCCC
Confidence            689999999999999987765122212 112221     1344443222111   22566788876  899999998765


Q ss_pred             ceecc-CCcceeeCCeEEEEEecCCCC------------------ccEEEEEeCCCceeeEe-cCCCCccccCCCCccce
Q 047073          217 YVLNQ-PYYGAFLNSALHWYAHSHDKR------------------TAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSI  276 (316)
Q Consensus       217 ~~~~~-~~~~v~~~G~lywl~~~~~~~------------------~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~  276 (316)
                      .+... ....+.++|.||.+++.....                  ...+.+||+++++|+.+ ++ |...       ...
T Consensus       239 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r-------~~~  310 (357)
T 2uvk_A          239 SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL-SQGR-------AYG  310 (357)
T ss_dssp             TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC-SSCC-------BSS
T ss_pred             CCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC-CCCc-------ccc
Confidence            43222 223678899999998742110                  13588999999999998 55 4433       223


Q ss_pred             EEEEECCeEEEEEccCC---CeEEEEEEeeCCCCCCeeeE
Q 047073          277 SVGVSGGFLYLCDGFLE---PNLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       277 ~L~~~~G~L~lv~~~~~---~~~~vW~l~~~~~~~~W~~~  313 (316)
                      ..+..+|+|+++.....   ..=+||+++= + +++|...
T Consensus       311 ~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~-~-~~~~~~~  348 (357)
T 2uvk_A          311 VSLPWNNSLLIIGGETAGGKAVTDSVLITV-K-DNKVTVQ  348 (357)
T ss_dssp             EEEEETTEEEEEEEECGGGCEEEEEEEEEC---CCSCEEE
T ss_pred             eeEEeCCEEEEEeeeCCCCCEeeeEEEEEE-c-CcEeEee
Confidence            55778999999987532   2457898853 2 3468764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.25  E-value=2.4e-05  Score=76.52  Aligned_cols=160  Identities=11%  Similarity=0.004  Sum_probs=96.9

Q ss_pred             cCceEEeeeec--cCCceEEEEcCCCCceEecC-CC-----CCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCC
Q 047073          125 CNGLICLHEFS--YKQDIISVCNPILGDHLVLP-QL-----KRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSK  196 (316)
Q Consensus       125 ~~Gll~~~~~~--~~~~~~~v~NP~T~~~~~lP-~~-----~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~  196 (316)
                      .+|.|++.++.  .....++++||.|++|..++ +.     +. .+..  .+...... + -+|+.++......   ...
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~-~R~~--hs~~~~~~-~-~~lyv~GG~~~~~---~~~  467 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPV-ARMC--HTFTTISR-N-NQLLLIGGRKAPH---QGL  467 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCC-CCBS--CEEEEETT-T-TEEEEECCBSSTT---CBC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCc-cccc--eEEEEEcc-C-CEEEEEcCCCCCC---Ccc
Confidence            46666666532  12457999999999999998 52     22 2222  12222110 1 2355554322211   235


Q ss_pred             CeEEEEEeCCCceEecCCCCceeccCCcceee-CCeEEEEEecCCCCccEEEEEeCCCceeeEecCC---CCccccCCCC
Q 047073          197 PQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFL-NSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGP---PTREYEKCRP  272 (316)
Q Consensus       197 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lP---P~~~~~~~~~  272 (316)
                      ..+++|+..+++|+.++.+|..... ...+.+ +|.+|.+++.... . .+.+||+.+++|+.++..   |...      
T Consensus       468 ~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~-~-~v~~yd~~t~~W~~~~~~g~~p~~r------  538 (695)
T 2zwa_A          468 SDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEG-P-AMLLYNVTEEIFKDVTPKDEFFQNS------  538 (695)
T ss_dssp             CCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSS-C-SEEEEETTTTEEEECCCSSGGGGSC------
T ss_pred             ccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCC-C-CEEEEECCCCceEEccCCCCCCCcc------
Confidence            6799999999999999887754332 234554 9999999876433 2 799999999999988531   2222      


Q ss_pred             ccceEEEEEC---CeEEEEEccCC----CeEEEEEEe
Q 047073          273 INSISVGVSG---GFLYLCDGFLE----PNLDIWIMK  302 (316)
Q Consensus       273 ~~~~~L~~~~---G~L~lv~~~~~----~~~~vW~l~  302 (316)
                       .....++++   |+|+++.....    ..-++|+.+
T Consensus       539 -~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd  574 (695)
T 2zwa_A          539 -LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFK  574 (695)
T ss_dssp             -CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEE
T ss_pred             -cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEE
Confidence             222323444   88999886521    234566664

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.89  E-value=2.4e-06  Score=73.28  Aligned_cols=51  Identities=20%  Similarity=0.357  Sum_probs=45.9

Q ss_pred             CCCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHHHHhcCCC
Q 047073           38 SMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPF   88 (316)
Q Consensus        38 ~~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~~~~~~~~   88 (316)
                      .+..||+||+..||+.|++++|+++.+|||+||.+..++..-+.++.+..+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~   54 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP   54 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence            356799999999999999999999999999999999999998877776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.76  E-value=0.00045  Score=67.49  Aligned_cols=132  Identities=10%  Similarity=0.006  Sum_probs=83.6

Q ss_pred             cCceEEeeeeccCCceEEEEcCCCCceEecCC---CCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEE
Q 047073          125 CNGLICLHEFSYKQDIISVCNPILGDHLVLPQ---LKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEV  201 (316)
Q Consensus       125 ~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~---~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~v  201 (316)
                      ++|.|++.++......++++||.|++|..+++   +|. .+.. ..++.++...  -+|+.++....++.  .....+++
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~-~r~~-~~a~v~~~~~--~~iyv~GG~~~~~~--~~~~~v~~  572 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQ-NSLV-SAGLEFDPVS--KQGIILGGGFMDQT--TVSDKAII  572 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGG-SCCB-SCEEEEETTT--TEEEEECCBCTTSS--CBCCEEEE
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCC-cccc-eeEEEEeCCC--CEEEEECCcCCCCC--eeeCcEEE
Confidence            37777666532112289999999999999987   333 2222 2223444322  34555543322211  34678999


Q ss_pred             EEeCCCc------eEecCCCCceeccCCcceeeC-CeEEEEEecCCC----CccEEEEEeCCCceeeEecCC
Q 047073          202 HTIGTNT------WRNIGDLPYVLNQPYYGAFLN-SALHWYAHSHDK----RTAFMCSFDLGDEQFRQFPGP  262 (316)
Q Consensus       202 y~s~t~~------W~~~~~~~~~~~~~~~~v~~~-G~lywl~~~~~~----~~~~i~~fD~~~~~~~~i~lP  262 (316)
                      |+..++.      |+.+..+|.........+.++ |.+|.+++....    ....+..||+.+++|..+++|
T Consensus       573 yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p  644 (695)
T 2zwa_A          573 FKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPIS  644 (695)
T ss_dssp             EEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCC
T ss_pred             EEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeecc
Confidence            9999999      777765432222233457778 999999875322    145799999999999988874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.56  E-value=2e-05  Score=69.61  Aligned_cols=42  Identities=38%  Similarity=0.677  Sum_probs=37.7

Q ss_pred             CCCCCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHH
Q 047073           36 NVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPY   77 (316)
Q Consensus        36 ~~~~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~   77 (316)
                      ...+..||+|++.+||.+|+.+++.+++.|||+|+.++.++.
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~   47 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES   47 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence            456789999999999999999999999999999999986554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.51  E-value=0.00029  Score=68.33  Aligned_cols=152  Identities=11%  Similarity=0.010  Sum_probs=91.8

Q ss_pred             eEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeeccc--ccCCCCCeEEEEEeCCCceEecCCCCc
Q 047073          140 IISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQA--AISSSKPQVEVHTIGTNTWRNIGDLPY  217 (316)
Q Consensus       140 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~--~~~~~~~~~~vy~s~t~~W~~~~~~~~  217 (316)
                      .+..+||.+++|..++++|. ..  .  ...+.+.  +-+|+.+.....+.  ........+++|+..++.|+.+..++.
T Consensus       167 ~~~~~dp~~~~W~~~~~~P~-~~--~--~~av~~~--~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~  239 (656)
T 1k3i_A          167 SYTAPQPGLGRWGPTIDLPI-VP--A--AAAIEPT--SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT  239 (656)
T ss_dssp             CCCCCCTTSCEEEEEEECSS-CC--S--EEEEETT--TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC
T ss_pred             ccccCCCCCCeeeeeccCCC-Cc--e--eEEEEec--CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC
Confidence            45567999999998887764 11  1  2222221  23555554432210  000112368999999999998865544


Q ss_pred             eeccCCc--ceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEe-cCCCCccccCCCCccceEEEEE-CCeEEEEEccCC
Q 047073          218 VLNQPYY--GAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSISVGVS-GGFLYLCDGFLE  293 (316)
Q Consensus       218 ~~~~~~~--~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~-~G~L~lv~~~~~  293 (316)
                      .....+.  .+..||.+|.+++..   ...+..||+.+++|..+ ++ |...       .....+.+ +|+|+++....+
T Consensus       240 ~~~~~~~~~~~~~~g~lyv~GG~~---~~~v~~yd~~t~~W~~~~~~-~~~R-------~~~s~~~~~dg~iyv~GG~~~  308 (656)
T 1k3i_A          240 KHDMFCPGISMDGNGQIVVTGGND---AKKTSLYDSSSDSWIPGPDM-QVAR-------GYQSSATMSDGRVFTIGGSWS  308 (656)
T ss_dssp             SCCCSSCEEEECTTSCEEEECSSS---TTCEEEEEGGGTEEEECCCC-SSCC-------SSCEEEECTTSCEEEECCCCC
T ss_pred             CCCCccccccCCCCCCEEEeCCCC---CCceEEecCcCCceeECCCC-Cccc-------cccceEEecCCeEEEEeCccc
Confidence            3322332  234689999998754   23799999999999987 33 3322       34466777 999999987322


Q ss_pred             -----CeEEEEEEeeCCCCCCeeeE
Q 047073          294 -----PNLDIWIMKKYGVKESWTKE  313 (316)
Q Consensus       294 -----~~~~vW~l~~~~~~~~W~~~  313 (316)
                           ..+.+|-.+    +..|+..
T Consensus       309 ~~~~~~~~e~yd~~----t~~W~~~  329 (656)
T 1k3i_A          309 GGVFEKNGEVYSPS----SKTWTSL  329 (656)
T ss_dssp             SSSCCCCEEEEETT----TTEEEEE
T ss_pred             CCcccccceEeCCC----CCcceeC
Confidence                 344444332    3468764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.37  E-value=0.00059  Score=66.08  Aligned_cols=121  Identities=7%  Similarity=0.012  Sum_probs=78.0

Q ss_pred             CceEEeeeecc---------CCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCC
Q 047073          126 NGLICLHEFSY---------KQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSK  196 (316)
Q Consensus       126 ~Gll~~~~~~~---------~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~  196 (316)
                      +|.|++..+..         ....+.++||.|++|..++.++. .+.....+..+..   +-+|+.+...        ..
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~~---~g~lyv~GG~--------~~  264 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMDG---NGQIVVTGGN--------DA  264 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEECT---TSCEEEECSS--------ST
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCCC---CCCEEEeCCC--------CC
Confidence            77777664311         11368999999999999887754 2222121222211   1244544321        12


Q ss_pred             CeEEEEEeCCCceEecCCCCceeccCCcceee-CCeEEEEEecCCCC--ccEEEEEeCCCceeeEe
Q 047073          197 PQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFL-NSALHWYAHSHDKR--TAFMCSFDLGDEQFRQF  259 (316)
Q Consensus       197 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i  259 (316)
                      ..+++|+..++.|+.++.++... .....+.+ ||.+|.+++...+.  ...+..||+.+++|..+
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             CceEEecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            37999999999999998776543 22334666 99999998732211  35689999999999987

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.08  E-value=0.00012  Score=69.65  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=29.4

Q ss_pred             CCCCCCCHHHHHHHHhcCC-ccccccccccchhhhhh
Q 047073           37 VSMEDLPLPILVDVFSRLP-IKTILQIKCVCKTWHSL   72 (316)
Q Consensus        37 ~~~~~LP~dll~~IL~rLP-~~sl~r~r~VcK~W~sl   72 (316)
                      ..++.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4577899999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.31  E-value=0.00097  Score=63.40  Aligned_cols=33  Identities=15%  Similarity=0.287  Sum_probs=31.3

Q ss_pred             CCCCHHHHHHHHhcC-Cccccccccccchhhhhh
Q 047073           40 EDLPLPILVDVFSRL-PIKTILQIKCVCKTWHSL   72 (316)
Q Consensus        40 ~~LP~dll~~IL~rL-P~~sl~r~r~VcK~W~sl   72 (316)
                      ..||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            479999999999999 899999999999999987

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=89.03  E-value=8.6  Score=31.69  Aligned_cols=150  Identities=13%  Similarity=0.050  Sum_probs=81.2

Q ss_pred             eccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEE
Q 047073          123 SSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVH  202 (316)
Q Consensus       123 ~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy  202 (316)
                      -..+|-+.+.+..  ...++++|+..+....+....   ......++.+|+..   +++...         .....+.+|
T Consensus       128 ~~~~g~l~v~~~~--~~~i~~~~~~g~~~~~~~~~~---~~~~p~~i~~~~~g---~l~v~~---------~~~~~i~~~  190 (286)
T 1q7f_A          128 VDNKGRIIVVECK--VMRVIIFDQNGNVLHKFGCSK---HLEFPNGVVVNDKQ---EIFISD---------NRAHCVKVF  190 (286)
T ss_dssp             ECTTSCEEEEETT--TTEEEEECTTSCEEEEEECTT---TCSSEEEEEECSSS---EEEEEE---------GGGTEEEEE
T ss_pred             EeCCCCEEEEECC--CCEEEEEcCCCCEEEEeCCCC---ccCCcEEEEECCCC---CEEEEE---------CCCCEEEEE
Confidence            3446777666523  578999998765555543221   11225677777742   233322         124568888


Q ss_pred             EeCCCceEecCCCCceeccCCcceee--CCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEE
Q 047073          203 TIGTNTWRNIGDLPYVLNQPYYGAFL--NSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGV  280 (316)
Q Consensus       203 ~s~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~  280 (316)
                      +.....-..+.....  .....++.+  +|.+|......   ...|..||.+.+....+.. .....      ....++.
T Consensus       191 ~~~g~~~~~~~~~g~--~~~p~~i~~d~~G~l~v~~~~~---~~~i~~~~~~g~~~~~~~~-~~~~~------~~~~i~~  258 (286)
T 1q7f_A          191 NYEGQYLRQIGGEGI--TNYPIGVGINSNGEILIADNHN---NFNLTIFTQDGQLISALES-KVKHA------QCFDVAL  258 (286)
T ss_dssp             ETTCCEEEEESCTTT--SCSEEEEEECTTCCEEEEECSS---SCEEEEECTTSCEEEEEEE-SSCCS------CEEEEEE
T ss_pred             cCCCCEEEEEccCCc--cCCCcEEEECCCCCEEEEeCCC---CEEEEEECCCCCEEEEEcc-cCCCC------cceeEEE
Confidence            875443333321100  011113444  67766655442   1289999988776666644 21110      1223444


Q ss_pred             E-CCeEEEEEccCCCeEEEEEEee
Q 047073          281 S-GGFLYLCDGFLEPNLDIWIMKK  303 (316)
Q Consensus       281 ~-~G~L~lv~~~~~~~~~vW~l~~  303 (316)
                      . +|+|++..  .+..+.||....
T Consensus       259 ~~~g~l~vs~--~~~~v~v~~~~~  280 (286)
T 1q7f_A          259 MDDGSVVLAS--KDYRLYIYRYVQ  280 (286)
T ss_dssp             ETTTEEEEEE--TTTEEEEEECSC
T ss_pred             CCCCcEEEEC--CCCeEEEEEccc
Confidence            3 78887774  378999998754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=85.07  E-value=16  Score=30.63  Aligned_cols=110  Identities=15%  Similarity=0.044  Sum_probs=66.3

Q ss_pred             CceEEeeeeccCCceEEEEcCCCCceE-ecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEe
Q 047073          126 NGLICLHEFSYKQDIISVCNPILGDHL-VLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTI  204 (316)
Q Consensus       126 ~Gll~~~~~~~~~~~~~v~NP~T~~~~-~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s  204 (316)
                      +|.|..+.+.+..+.+.++|+.|++.. .++..+.      .++.|.....+  ++....         -....+.||+.
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~------~FgeGit~~g~--~ly~lt---------w~~~~v~v~D~  114 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR------YFGEGISDWKD--KIVGLT---------WKNGLGFVWNI  114 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT------CCEEEEEEETT--EEEEEE---------SSSSEEEEEET
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc------cceeEEEEeCC--EEEEEE---------eeCCEEEEEEC
Confidence            788887775434569999999999854 3433222      22333333222  333332         22567899998


Q ss_pred             CCCceE-ecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCc-eeeEecC
Q 047073          205 GTNTWR-NIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDE-QFRQFPG  261 (316)
Q Consensus       205 ~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~-~~~~i~l  261 (316)
                      .+..=. .++..     ....++..+|...|++..    ...|..+|+++. .-..|+.
T Consensus       115 ~t~~~~~ti~~~-----~eG~glt~dg~~L~~SdG----s~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          115 RNLRQVRSFNYD-----GEGWGLTHNDQYLIMSDG----TPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             TTCCEEEEEECS-----SCCCCEEECSSCEEECCS----SSEEEEECTTTCSEEEEEEC
T ss_pred             ccCcEEEEEECC-----CCceEEecCCCEEEEECC----CCeEEEEcCCCCeEEEEEEe
Confidence            887542 22211     123367778877777654    458999999975 4566666

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=84.19  E-value=18  Score=30.39  Aligned_cols=113  Identities=12%  Similarity=0.007  Sum_probs=64.7

Q ss_pred             cCceEEeeeeccCCceEEEEcCCCCceEe-cCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEE
Q 047073          125 CNGLICLHEFSYKQDIISVCNPILGDHLV-LPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHT  203 (316)
Q Consensus       125 ~~Gll~~~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~  203 (316)
                      -+|.|....+....+.+.++|+.|++... +|.... .+   ..++..+.  +  ++....         -....+.||+
T Consensus        30 ~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~f---geGi~~~g--~--~lyv~t---------~~~~~v~viD   92 (266)
T 2iwa_A           30 ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YF---GEGLTLLN--E--KLYQVV---------WLKNIGFIYD   92 (266)
T ss_dssp             STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CC---EEEEEEET--T--EEEEEE---------TTCSEEEEEE
T ss_pred             CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cc---eEEEEEeC--C--EEEEEE---------ecCCEEEEEE
Confidence            34777777632336899999999999553 443221 11   23444442  2  333332         2356789999


Q ss_pred             eCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCc-eeeEecC
Q 047073          204 IGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDE-QFRQFPG  261 (316)
Q Consensus       204 s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~-~~~~i~l  261 (316)
                      ..+..  .+...+.. .....++..+|.-.|++. +   ...|..+|+++. .-..|+.
T Consensus        93 ~~t~~--v~~~i~~g-~~~g~glt~Dg~~l~vs~-g---s~~l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A           93 RRTLS--NIKNFTHQ-MKDGWGLATDGKILYGSD-G---TSILYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             TTTTE--EEEEEECC-SSSCCEEEECSSSEEEEC-S---SSEEEEECTTTCCEEEEEEC
T ss_pred             CCCCc--EEEEEECC-CCCeEEEEECCCEEEEEC-C---CCeEEEEECCCCcEEEEEEE
Confidence            88763  22222222 122335777776555665 3   458999999885 3455555

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=83.29  E-value=22  Score=30.93  Aligned_cols=135  Identities=10%  Similarity=0.086  Sum_probs=71.4

Q ss_pred             CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceE-ecCCCC
Q 047073          138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWR-NIGDLP  216 (316)
Q Consensus       138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~-~~~~~~  216 (316)
                      .+.++|||..+++...+-...   ....+..+.+.+. +.+  ++...         ....+.+|+..++.-. .+....
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~---~~~~v~~v~~s~~-~~~--l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~  176 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETD---ESTYVASVKWSHD-GSF--LSVGL---------GNGLVDIYDVESQTKLRTMAGHQ  176 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECC---TTCCEEEEEECTT-SSE--EEEEE---------TTSCEEEEETTTCCEEEEECCCS
T ss_pred             CCeEEEeeCCCCcEeEeeecC---CCCCEEEEEECCC-CCE--EEEEC---------CCCeEEEEECcCCeEEEEecCCC
Confidence            789999999999876544331   2233667777763 333  22221         1356888988877432 221111


Q ss_pred             ceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEE-CCeEEEEEccCCCe
Q 047073          217 YVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVS-GGFLYLCDGFLEPN  295 (316)
Q Consensus       217 ~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~  295 (316)
                          ..-..+..+|.+...+..    ...|..+|+.+..-....+ .....      .-..+... +|++.++... +..
T Consensus       177 ----~~v~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~-~~~~~------~v~~~~~~~~~~~l~s~~~-d~~  240 (401)
T 4aez_A          177 ----ARVGCLSWNRHVLSSGSR----SGAIHHHDVRIANHQIGTL-QGHSS------EVCGLAWRSDGLQLASGGN-DNV  240 (401)
T ss_dssp             ----SCEEEEEEETTEEEEEET----TSEEEEEETTSSSCEEEEE-ECCSS------CEEEEEECTTSSEEEEEET-TSC
T ss_pred             ----CceEEEEECCCEEEEEcC----CCCEEEEecccCcceeeEE-cCCCC------CeeEEEEcCCCCEEEEEeC-CCe
Confidence                111134456665555544    4589999997433222222 11110      11122222 5555555553 678


Q ss_pred             EEEEEEee
Q 047073          296 LDIWIMKK  303 (316)
Q Consensus       296 ~~vW~l~~  303 (316)
                      +.+|-+..
T Consensus       241 v~iwd~~~  248 (401)
T 4aez_A          241 VQIWDARS  248 (401)
T ss_dssp             EEEEETTC
T ss_pred             EEEccCCC
Confidence            88887653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=82.45  E-value=19  Score=29.44  Aligned_cols=115  Identities=10%  Similarity=-0.029  Sum_probs=62.0

Q ss_pred             eeeccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEE
Q 047073          121 LLSSCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVE  200 (316)
Q Consensus       121 ~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~  200 (316)
                      +....+|.+.+....  ...++++|| +++...+..+..   .....++.+|+..   ++....         .....+.
T Consensus       104 i~~~~~g~l~v~~~~--~~~i~~~d~-~g~~~~~~~~~~---~~~~~~i~~~~~g---~l~v~~---------~~~~~i~  165 (299)
T 2z2n_A          104 ITEGPNGDIWFTEMN--GNRIGRITD-DGKIREYELPNK---GSYPSFITLGSDN---ALWFTE---------NQNNAIG  165 (299)
T ss_dssp             EEECTTSCEEEEETT--TTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTS---CEEEEE---------TTTTEEE
T ss_pred             eEECCCCCEEEEecC--CceEEEECC-CCCEEEecCCCC---CCCCceEEEcCCC---CEEEEe---------CCCCEEE
Confidence            333446777666522  568999999 777665433211   1224567776542   222221         1235677


Q ss_pred             EEEeCCCceEecCCCCceeccCCcceee--CCeEEEEEecCCCCccEEEEEeCCCceeeEecC
Q 047073          201 VHTIGTNTWRNIGDLPYVLNQPYYGAFL--NSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPG  261 (316)
Q Consensus       201 vy~s~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~l  261 (316)
                      +|+. ++..........  .....++.+  +|.+|+....    ...|..||+ +..+..+.+
T Consensus       166 ~~~~-~g~~~~~~~~~~--~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~~  220 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTP--ASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEFKI  220 (299)
T ss_dssp             EECT-TCCEEEEECSST--TCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEEC
T ss_pred             EEcC-CCcEEEeeCCCC--CCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEEEC
Confidence            7777 666654311100  001113333  5787655433    348999999 777776666

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=81.78  E-value=19  Score=31.87  Aligned_cols=149  Identities=9%  Similarity=0.077  Sum_probs=73.1

Q ss_pred             cCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEe
Q 047073          125 CNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTI  204 (316)
Q Consensus       125 ~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s  204 (316)
                      .++-++.....  .+.+.|||..+++...+-...  .+...+..+.|.|..+.+ ++..          .....+.+++.
T Consensus       130 ~~~~~lasGs~--dg~i~lWd~~~~~~~~~~~~~--gH~~~V~~l~f~p~~~~~-l~s~----------s~D~~v~iwd~  194 (435)
T 4e54_B          130 THPSTVAVGSK--GGDIMLWNFGIKDKPTFIKGI--GAGGSITGLKFNPLNTNQ-FYAS----------SMEGTTRLQDF  194 (435)
T ss_dssp             SCTTCEEEEET--TSCEEEECSSCCSCCEEECCC--SSSCCCCEEEECSSCTTE-EEEE----------CSSSCEEEEET
T ss_pred             CCCCEEEEEeC--CCEEEEEECCCCCceeEEEcc--CCCCCEEEEEEeCCCCCE-EEEE----------eCCCEEEEeec
Confidence            35544433324  789999999888744322221  122336677777754443 2221          22356788887


Q ss_pred             CCCceEecCCCCceeccCCcce--eeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEE-
Q 047073          205 GTNTWRNIGDLPYVLNQPYYGA--FLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVS-  281 (316)
Q Consensus       205 ~t~~W~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~-  281 (316)
                      +++.-+........ .....++  .-+|.+...+..    ...|..+|+.+.....+..   +..      .-..+... 
T Consensus       195 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~----dg~i~~wd~~~~~~~~~~~---h~~------~v~~v~~~p  260 (435)
T 4e54_B          195 KGNILRVFASSDTI-NIWFCSLDVSASSRMVVTGDN----VGNVILLNMDGKELWNLRM---HKK------KVTHVALNP  260 (435)
T ss_dssp             TSCEEEEEECCSSC-SCCCCCEEEETTTTEEEEECS----SSBEEEEESSSCBCCCSBC---CSS------CEEEEEECT
T ss_pred             cCCceeEEeccCCC-CccEEEEEECCCCCEEEEEeC----CCcEeeeccCcceeEEEec---ccc------eEEeeeecC
Confidence            77654433211000 0001112  225555544443    4578889987654332221   110      11222222 


Q ss_pred             CCe-EEEEEccCCCeEEEEEEee
Q 047073          282 GGF-LYLCDGFLEPNLDIWIMKK  303 (316)
Q Consensus       282 ~G~-L~lv~~~~~~~~~vW~l~~  303 (316)
                      +|. +++... .+..+.||-+..
T Consensus       261 ~~~~~~~s~s-~d~~v~iwd~~~  282 (435)
T 4e54_B          261 CCDWFLATAS-VDQTVKIWDLRQ  282 (435)
T ss_dssp             TCSSEEEEEE-TTSBCCEEETTT
T ss_pred             CCceEEEEec-CcceeeEEeccc
Confidence            344 444444 378889997653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=81.41  E-value=43  Score=32.87  Aligned_cols=136  Identities=12%  Similarity=0.044  Sum_probs=69.9

Q ss_pred             CceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeC
Q 047073          126 NGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIG  205 (316)
Q Consensus       126 ~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~  205 (316)
                      +|.|.+.+..  ..++.++++-.+....|-..    ......++.+|+..+.  |++...        .....+++++..
T Consensus       482 ~~~LY~tD~~--~~~I~v~~ldG~~~~~l~~~----~l~~P~gIaVDp~~g~--LYwtD~--------g~~~~I~~~~~d  545 (791)
T 3m0c_C          482 HSNIYWTDSV--LGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGF--MYWTDW--------GTPAKIKKGGLN  545 (791)
T ss_dssp             TTEEEEEETT--TTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTE--EEEEEC--------SSSCEEEEEETT
T ss_pred             CCcEEEEecC--CCeEEEEeCCCCeEEEEEeC----CCCCcceEEEecCCCC--EEEecC--------CCCCeEEEEecC
Confidence            4445555422  45666666665554443221    1112568888886542  222221        112456666655


Q ss_pred             CCceEecCCCCceeccCCcceee---CCeEEEEEecCCCCccEEEEEeCCCceeeEe-cCCCCccccCCCCccceEEEEE
Q 047073          206 TNTWRNIGDLPYVLNQPYYGAFL---NSALHWYAHSHDKRTAFMCSFDLGDEQFRQF-PGPPTREYEKCRPINSISVGVS  281 (316)
Q Consensus       206 t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i-~lPP~~~~~~~~~~~~~~L~~~  281 (316)
                      ...-+.+....   ...-.++.+   +|.|||....    ...|.++|+....-..+ .. ....  .    ....|+..
T Consensus       546 G~~~~~lv~~~---l~~P~GLavD~~~~~LYwaD~~----~~~I~~~d~dG~~~~~v~~~-~~~l--~----~P~glav~  611 (791)
T 3m0c_C          546 GVDIYSLVTEN---IQWPNGITLDLLSGRLYWVDSK----LHSISSIDVNGGNRKTILED-EKRL--A----HPFSLAVF  611 (791)
T ss_dssp             SCCEEEEECSS---CSCEEEEEEETTTTEEEEEETT----TTEEEEEETTSCSCEEEEEC-TTTT--S----SEEEEEEE
T ss_pred             CCceEEEEeCC---CCCceEEEEecCCCeEEEEeCC----CCcEEEEecCCCceEEEecC-CCcc--C----CCCEEEEe
Confidence            43322221100   011124444   5899999765    46899999987644443 22 1111  1    34466777


Q ss_pred             CCeEEEEEcc
Q 047073          282 GGFLYLCDGF  291 (316)
Q Consensus       282 ~G~L~lv~~~  291 (316)
                      +++|+++...
T Consensus       612 ~~~lYwtD~~  621 (791)
T 3m0c_C          612 EDKVFWTDII  621 (791)
T ss_dssp             TTEEEEEETT
T ss_pred             CCEEEEEECC
Confidence            8888887754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=80.49  E-value=29  Score=30.41  Aligned_cols=146  Identities=12%  Similarity=0.125  Sum_probs=76.1

Q ss_pred             ccCceEEeeeeccCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEE
Q 047073          124 SCNGLICLHEFSYKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHT  203 (316)
Q Consensus       124 s~~Gll~~~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~  203 (316)
                      |.+++|.+..    ...++|||..|++...+-....  ....+..+.+.+. +.|-+  .+         .....+.+|+
T Consensus       114 S~~n~lAvgl----d~tV~lWd~~tg~~~~~~~~~~--~~~~V~sv~fspd-g~~la--sg---------s~Dg~v~iWd  175 (420)
T 4gga_A          114 SSGNVLAVAL----DNSVYLWSASSGDILQLLQMEQ--PGEYISSVAWIKE-GNYLA--VG---------TSSAEVQLWD  175 (420)
T ss_dssp             CTTSEEEEEE----TTEEEEEETTTCCEEEEEECCS--TTCCEEEEEECTT-SSEEE--EE---------ETTSCEEEEE
T ss_pred             CCCCEEEEEe----CCEEEEEECCCCCEEEEEEecC--CCCcEEEEEECCC-CCEEE--EE---------ECCCeEEEEE
Confidence            3466665554    7899999999998776443321  2233667777664 33432  22         1246688999


Q ss_pred             eCCCceE-ecCCCCceeccCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEE-E
Q 047073          204 IGTNTWR-NIGDLPYVLNQPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGV-S  281 (316)
Q Consensus       204 s~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~-~  281 (316)
                      ..++.-. ......    ....++..+|.+...+..    ...+..+|..+.......+ ..+..      ....+.. -
T Consensus       176 ~~~~~~~~~~~~h~----~~v~~~s~~~~~l~sgs~----d~~i~~~d~~~~~~~~~~~-~~h~~------~~~~~~~~~  240 (420)
T 4gga_A          176 VQQQKRLRNMTSHS----ARVGSLSWNSYILSSGSR----SGHIHHHDVRVAEHHVATL-SGHSQ------EVCGLRWAP  240 (420)
T ss_dssp             TTTTEEEEEECCCS----SCEEEEEEETTEEEEEET----TSEEEEEETTSSSCEEEEE-ECCSS------CEEEEEECT
T ss_pred             cCCCcEEEEEeCCC----CceEEEeeCCCEEEEEeC----CCceeEeeecccceeeEEe-ccccc------ceeeeeecC
Confidence            8877421 111111    111134556655444444    4577788877654433333 11111      1111222 2


Q ss_pred             CCeEEEEEccCCCeEEEEEEee
Q 047073          282 GGFLYLCDGFLEPNLDIWIMKK  303 (316)
Q Consensus       282 ~G~L~lv~~~~~~~~~vW~l~~  303 (316)
                      +|+..+.... +..+.||-...
T Consensus       241 ~g~~l~s~~~-D~~v~i~~~~~  261 (420)
T 4gga_A          241 DGRHLASGGN-DNLVNVWPSAP  261 (420)
T ss_dssp             TSSEEEEEET-TSCEEEEESSC
T ss_pred             CCCeeeeeec-cccceEEeecc
Confidence            4555444443 67778887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	3e-10
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-06
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	2e-06
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	7e-05

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (126), Expect = 3e-10
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 40 EDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYF 78
          + LP  +L+ +FS L +  +L++  VCK W+ L SD   
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 15/61 (24%), Positives = 21/61 (34%)

Query: 40  EDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCKR 99
             LP  + + V S L  K +LQ    C+ W  L  D    +           +  K  K 
Sbjct: 20  SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKV 79

Query: 100 I 100
           I
Sbjct: 80  I 80

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 46 ILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARAPFSIMILEKFCKR 99
          I  ++ S L  K++   + VCK W+ + SD    K  + R   +  +     +R
Sbjct: 22 IAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAER 75

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 7e-05
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 40  EDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLC-SDPYFAKIHLARAPFSIMILEKFCK 98
             LP  I + +F+ L  + I+    V + W+ +        K  L    F   +  K   
Sbjct: 7   TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENF---VSPKGFN 63

Query: 99  RIYTNSLVPLFTLNQGDKERLSLLSSC 125
            +          L+Q D+ RLS L + 
Sbjct: 64  SLNLKLSQKYPKLSQQDRLRLSFLENI 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.66
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.44
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.36
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.15
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.94
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.73
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.07
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	87.36

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.4e-12  Score=76.03  Aligned_cols=40  Identities=35%  Similarity=0.678  Sum_probs=37.0

Q ss_pred             CCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHH
Q 047073           39 MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYF   78 (316)
Q Consensus        39 ~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F   78 (316)
                      +..||+|++.+||+.||++++.+++.|||+|+.++.++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            3579999999999999999999999999999999988764

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.9e-09  Score=74.55  Aligned_cols=52  Identities=23%  Similarity=0.302  Sum_probs=46.7

Q ss_pred             CCCCCCCCCHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHHHHhcC
Q 047073           35 YNVSMEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLARA   86 (316)
Q Consensus        35 ~~~~~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~~~~~~   86 (316)
                      ....+..||+||+..||+.||+++++++.+|||+|+.++.++.+-+.++.+.
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~   66 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            3566788999999999999999999999999999999999999988777554

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=3.7e-08  Score=69.98  Aligned_cols=43  Identities=21%  Similarity=0.448  Sum_probs=37.2

Q ss_pred             CCCCCHHHHHHHHhcCCccccccccccchhhhhhcC-CHHHHHH
Q 047073           39 MEDLPLPILVDVFSRLPIKTILQIKCVCKTWHSLCS-DPYFAKI   81 (316)
Q Consensus        39 ~~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~sli~-s~~F~~~   81 (316)
                      +..||+||+.+||+.|+++++.+++.|||+|+.++. ++.+-+.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~   49 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK   49 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            346999999999999999999999999999999985 5664443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.7e-06  Score=69.63  Aligned_cols=137  Identities=14%  Similarity=0.145  Sum_probs=90.7

Q ss_pred             CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEee--cccccCCCCCeEEEEEeCCCceEecCCC
Q 047073          138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYK--DQAAISSSKPQVEVHTIGTNTWRNIGDL  215 (316)
Q Consensus       138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~--~~~~~~~~~~~~~vy~s~t~~W~~~~~~  215 (316)
                      -..+.++||.|++|..+|++|. ++..... ...    +. +++.+....  .++.  .....+++|+..++.|+.++.+
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~-~R~~~~~-~~~----~~-~iyv~GG~~~~~~~~--~~~~~~~~yd~~~~~w~~~~~~   88 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQV-PRSGLAG-CVV----GG-LLYAVGGRNNSPDGN--TDSSALDCYNPMTNQWSPCAPM   88 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSS-CCBSCEE-EEE----TT-EEEEECCEEEETTEE--EECCCEEEEETTTTEEEECCCC
T ss_pred             CceEEEEECCCCeEEECCCCCC-ccceeEE-EEE----CC-EEEEEeCcccCCCCc--cccchhhhcccccccccccccc
Confidence            4578899999999999998876 4433222 122    12 344443221  1111  3357899999999999999877


Q ss_pred             CceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEcc
Q 047073          216 PYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGF  291 (316)
Q Consensus       216 ~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~  291 (316)
                      |... .....+.++|.+|.+....... ......+|+.++.|...+.+|...       .....+..++++.++...
T Consensus        89 p~~r-~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-------~~~~~~~~~~~~~~~GG~  157 (288)
T d1zgka1          89 SVPR-NRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR-------IGVGVAVLNRLLYAVGGF  157 (288)
T ss_dssp             SSCC-BTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC-------BSCEEEEETTEEEEECCB
T ss_pred             ccee-cceeccccceeeEEecceecccccceeeeeccccCcccccccccccc-------ccceeeeeeecceEecCc
Confidence            7543 2334677899999886653322 445788999999998875534433       334567778888877653

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.7e-07  Score=68.62  Aligned_cols=43  Identities=28%  Similarity=0.386  Sum_probs=38.0

Q ss_pred             CHHHHHHHHhcCCccccccccccchhhhhhcCCHHHHHHHHhc
Q 047073           43 PLPILVDVFSRLPIKTILQIKCVCKTWHSLCSDPYFAKIHLAR   85 (316)
Q Consensus        43 P~dll~~IL~rLP~~sl~r~r~VcK~W~sli~s~~F~~~~~~~   85 (316)
                      ++||+..||+.|++++|.++.+|||+|+.++.++.+-+..+.+
T Consensus        19 ~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          19 LDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             CHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            3699999999999999999999999999999988887665433

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.00062  Score=56.10  Aligned_cols=112  Identities=13%  Similarity=0.145  Sum_probs=74.8

Q ss_pred             CCCCeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC-ccEEEEEeCCCceeeEecCCCCccccCCCC
Q 047073          194 SSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR-TAFMCSFDLGDEQFRQFPGPPTREYEKCRP  272 (316)
Q Consensus       194 ~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~  272 (316)
                      .....++.|+..++.|......+... .....+..+|.+|-+....... ......||+.+++|..+.-+|...      
T Consensus       161 ~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r------  233 (288)
T d1zgka1         161 NRLNSAECYYPERNEWRMITAMNTIR-SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR------  233 (288)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC------
T ss_pred             cccceEEEeecccccccccccccccc-ccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcc------
Confidence            34567899999999999887554432 2233567788888876554332 456789999999999884325433      


Q ss_pred             ccceEEEEECCeEEEEEccCC--CeEEEEEEeeCCCCCCeeeEEE
Q 047073          273 INSISVGVSGGFLYLCDGFLE--PNLDIWIMKKYGVKESWTKEFV  315 (316)
Q Consensus       273 ~~~~~L~~~~G~L~lv~~~~~--~~~~vW~l~~~~~~~~W~~~~~  315 (316)
                       ....++..+|+|+++....+  ..=+||+.+ .+ ...|+..-.
T Consensus       234 -~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd-~~-~~~W~~~~~  275 (288)
T d1zgka1         234 -SALGITVHQGRIYVLGGYDGHTFLDSVECYD-PD-TDTWSEVTR  275 (288)
T ss_dssp             -BSCEEEEETTEEEEECCBCSSCBCCEEEEEE-TT-TTEEEEEEE
T ss_pred             -cceEEEEECCEEEEEecCCCCeecceEEEEE-CC-CCEEEECCC
Confidence             34466788999999875422  223467774 22 346988653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.73  E-value=3.6e-05  Score=66.84  Aligned_cols=128  Identities=7%  Similarity=0.035  Sum_probs=81.6

Q ss_pred             eeeccCceEEeeeec---------cCCceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccc
Q 047073          121 LLSSCNGLICLHEFS---------YKQDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAA  191 (316)
Q Consensus       121 ~~~s~~Gll~~~~~~---------~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~  191 (316)
                      .+...+|-|++..+.         .......++||.|++|..+|+++. .......+....+   +-+|+.+..      
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~~---~g~i~v~Gg------   94 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMDG---NGQIVVTGG------   94 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEECT---TSCEEEECS------
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCC-CcccceeEEEEec---CCcEEEeec------
Confidence            344567777665431         001247899999999998877654 2222222333322   234444432      


Q ss_pred             cCCCCCeEEEEEeCCCceEecCCCCceeccCCcceeeCCeEEEEEecCCCC--ccEEEEEeCCCceeeEec
Q 047073          192 ISSSKPQVEVHTIGTNTWRNIGDLPYVLNQPYYGAFLNSALHWYAHSHDKR--TAFMCSFDLGDEQFRQFP  260 (316)
Q Consensus       192 ~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~i~~fD~~~~~~~~i~  260 (316)
                        .....+++|+..++.|+..+.++.........+..||.+|.+.......  ...+..||+.+++|..++
T Consensus        95 --~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3          95 --NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             --SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             --CCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecC
Confidence              2246789999999999999887765432222444589999987754332  346899999999999884

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.07  E-value=0.0012  Score=56.62  Aligned_cols=131  Identities=13%  Similarity=0.009  Sum_probs=77.0

Q ss_pred             cCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccc--cCCCCCeEEEEEeCCCceEecCCCC--ceec
Q 047073          145 NPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAA--ISSSKPQVEVHTIGTNTWRNIGDLP--YVLN  220 (316)
Q Consensus       145 NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~--~~~~~~~~~vy~s~t~~W~~~~~~~--~~~~  220 (316)
                      .|.+++|...++.|. ..  .  .....+..  -||+.+.....+..  .......+++|+..+++|..+..++  ....
T Consensus         5 ~p~~g~W~~~~~~p~-~~--~--~~a~~~~~--gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~   77 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPI-VP--A--AAAIEPTS--GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF   77 (387)
T ss_dssp             CTTSCEEEEEEECSS-CC--S--EEEEETTT--TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred             CCCCCccCCcCCCCc-cc--c--EEEEEeeC--CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccc
Confidence            488999998777654 11  1  22222322  36777655432211  0122345889999999998765332  2222


Q ss_pred             cCCcceeeCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEcc
Q 047073          221 QPYYGAFLNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGF  291 (316)
Q Consensus       221 ~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~  291 (316)
                      .....+..+|.+|.....+   ...+..||+.+++|+.++..|....      ........+|+++++...
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~---~~~~~~yd~~~~~w~~~~~~~~~r~------~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGND---AKKTSLYDSSSDSWIPGPDMQVARG------YQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             SCEEEECTTSCEEEECSSS---TTCEEEEEGGGTEEEECCCCSSCCS------SCEEEECTTSCEEEECCC
T ss_pred             eeEEEEecCCcEEEeecCC---CcceeEecCccCccccccccccccc------ccceeeecCCceeeeccc
Confidence            2222455689999887654   3468899999999997743233221      222333347898888754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.36  E-value=5.2  Score=30.96  Aligned_cols=138  Identities=7%  Similarity=0.008  Sum_probs=67.4

Q ss_pred             CceEEEEcCCCCceEecCCCCCCCccCceEEEEEeCCCCCeEEEEEEEeecccccCCCCCeEEEEEeCCCceEecC-CCC
Q 047073          138 QDIISVCNPILGDHLVLPQLKRKNVATRIRGFGYNHCTNQYKVIQILSYKDQAAISSSKPQVEVHTIGTNTWRNIG-DLP  216 (316)
Q Consensus       138 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~~kvv~~~~~~~~~~~~~~~~~~~vy~s~t~~W~~~~-~~~  216 (316)
                      .+.+.++|..+++...+....   .......+.+++. +.+-+  ...         ....+.+|+..++...... ...
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~-~~~l~--~~~---------~d~~i~~~~~~~~~~~~~~~~~~  221 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIV---HPAEITSVAFSNN-GAFLV--ATD---------QSRKVIPYSVANNFELAHTNSWT  221 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEE---CSSCEEEEEECTT-SSEEE--EEE---------TTSCEEEEEGGGTTEESCCCCCC
T ss_pred             ccccccccccccccccccccc---ccccccccccccc-ccccc--ccc---------ccccccccccccccccccccccc
Confidence            678888888777655433221   1122456666653 23322  221         1346888888776543321 111


Q ss_pred             ceeccCCccee--eCCeEEEEEecCCCCccEEEEEeCCCceeeEecCCCCccccCCCCccceEEEEECCeEEEEEccCCC
Q 047073          217 YVLNQPYYGAF--LNSALHWYAHSHDKRTAFMCSFDLGDEQFRQFPGPPTREYEKCRPINSISVGVSGGFLYLCDGFLEP  294 (316)
Q Consensus       217 ~~~~~~~~~v~--~~G~lywl~~~~~~~~~~i~~fD~~~~~~~~i~lPP~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~  294 (316)
                      . ....-.++.  -+|.+...+..    ...|..+|+.+.....+.........     ....+...+|+..+... .+.
T Consensus       222 ~-h~~~v~~l~~s~~~~~l~sgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~l~s~s-~D~  290 (299)
T d1nr0a2         222 F-HTAKVACVSWSPDNVRLATGSL----DNSVIVWNMNKPSDHPIIIKGAHAMS-----SVNSVIWLNETTIVSAG-QDS  290 (299)
T ss_dssp             C-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTCTTSCCEEETTSSTTS-----CEEEEEEEETTEEEEEE-TTS
T ss_pred             c-cccccccccccccccceEEEcC----CCEEEEEECCCCCcceEEEecCCCCC-----cEEEEEECCCCEEEEEe-CCC
Confidence            0 000011222  25554444433    34788999887654333210111111     12223345666544444 479


Q ss_pred             eEEEEEE
Q 047073          295 NLDIWIM  301 (316)
Q Consensus       295 ~~~vW~l  301 (316)
                      .+.||-+
T Consensus       291 ~i~iWdl  297 (299)
T d1nr0a2         291 NIKFWNV  297 (299)
T ss_dssp             CEEEEEC
T ss_pred             EEEEEec
Confidence            9999976