Citrus Sinensis ID: 047084

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
Protein Sequence
KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGLPIICYQCGKYGHNSIVCQSKQKMNEANNGYSENIIPTNSAGEKDGAVDMTTEKSEKFGPWMIVA
Secondary Structure (PSIPRED)
cEEEccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccHHHHHHHcccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccEEEEccccEEEEEcccHHHHHHHHHcccEEEcccEEEEEEcccccccccccccEEEEEEEEccccHHHccHHHHHHHHHccccEEEEEccccccccccEEEEEEEEEcccccccEEEEccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccEEccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHccEEccccccHHHccHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHcEcEEEEccHHHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHccccccccccccHHHHcccccccccccHHHHHHccccccccccccccccccEEEccHHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHHHcccccEEEEEccccEEEEEEccHHHHHHHHHccccEEcccEEEEEEccccccccHHHccEEEEEEEEcccccccccHHHHHHHHHHcccEEEEcccccccccccEEEEEEEEEccccccEEEEEccEEEEEEEcccccHHcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEc
Coil and Loop (DISEMBL)
kvldledapvdylpegvgnlFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLlktippplaadrstkkarfrshevdadspsplsfkdalvhpeqyrssedaemeeewdlepgdvtigddgtmptiKFSKRIQDklikpwqnSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNyflirlkspedavyaltegpwvifghyltvqpwtpqfdstttdldSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLsqpllsrfnidgkiqkveyeglpiicyqcgkyghnsivcQSKQKmneanngyseniiptnsagekdgavdmtteksekfgpwmiva
Flexible Loop (DISEMBL)
KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNllktippplaadrstkKARFRshevdadspsplsfkdalvHPEQYRSSEDAEMEEEWdlepgdvtigddgTMPTIKFSKRiqdklikpwqNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRIslsqpllsrfniDGKIQKVEYEGLPIICYQCGKYGHNSIVCQSKQKMNEANNGYSeniiptnsagekdgavdmtteksekfgpwmiva
Low Complexity Region (SEG)
KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSFKDALVHPEQYRSSedaemeeewdlePGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGLPIICYQCGKYGHNSIVCQSKQKMNEANNGYSENIIPTNSAGEKDGAVDMTTEKSEKFGPWMIVA
Disordered region (IsUnstruct)
********PVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKT************************************************************TIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGLPIICYQCGKYGHNSIVCQ**********************************************
Disordered Region (DISOPRED)
KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGLPIICYQCGKYGHNSIVC*****************************************PWMIVA
Disordered Region (DISEMBL)
KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLA********************SPLSFKDALVHPE**************DLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGLPIICYQCGKYGHNSIVCQSKQKMNEANNGYSENIIPTNSAGEKDGAVDMTTEKSEKFGPWMIVA
Disordered Region (DISPRO)
KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGLPIICYQCGKYGHNSIVCQSK************************GAVDMTTE*SEKFGPWMIVA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGLPIICYQCGKYGHNSIVCQSKQKMNEANNGYSENIIPTNSAGEKDGAVDMTTEKSEKFGPWMIVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	437	2.2.26 [Sep-21-2011]
Q39214	926	Disease resistance protei	no	no	0.267	0.126	0.343	1e-12
Q6UWE0	723	E3 ubiquitin-protein liga	yes	no	0.162	0.098	0.405	7e-08
Q80ZI6	727	E3 ubiquitin-protein liga	yes	no	0.151	0.090	0.416	1e-07
Q9BTT6	524	Leucine-rich repeat-conta	no	no	0.292	0.244	0.322	5e-06
Q80VQ1	524	Leucine-rich repeat-conta	no	no	0.292	0.244	0.322	6e-06
Q80U72	1612	Protein scribble homolog	no	no	0.279	0.075	0.288	6e-06
Q14160	1630	Protein scribble homolog	no	no	0.279	0.074	0.288	6e-06
Q66JT1	795	Leucine-rich repeat-conta	no	no	0.283	0.155	0.309	8e-06
B4LXW1	614	Leucine-rich repeat prote	N/A	no	0.263	0.187	0.344	9e-06
B4JTV9	622	Leucine-rich repeat prote	N/A	no	0.263	0.184	0.344	1e-05

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 11/128 (8%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           + LDLED+ +  LP+ +  +FNL YL++  T+VK +PK+   L+ LETL+ K++ + ELP
Sbjct: 584 RALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELP 643

Query: 61  VEIRNLKRLRYLMVYQ--------YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALK 112
           + +  LK+LRYL+ ++        +NY  G    ++      L +LQ +    A+ E +K
Sbjct: 644 LGMWKLKKLRYLITFRRNEGHDSNWNYVLG---TRVVPKIWQLKDLQVMDCFNAEDELIK 700

Query: 113 ELMKLRQL 120
            L  + QL
Sbjct: 701 NLGCMTQL 708

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6UWE0|LRSM1_HUMAN E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 48/74 (64%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           KVLDL D  +  LP+ +G L  L  L+V+  ++  +P+SIGNL  L+TL++K+  ++ELP
Sbjct: 84  KVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLKELP 143

Query: 61  VEIRNLKRLRYLMV 74
             +  L+ LR L +
Sbjct: 144 DTVGELRSLRTLNI 157

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) and exocytic (HIV-1 viral proteins) cargos.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q80ZI6|LRSM1_MOUSE E3 ubiquitin-protein ligase LRSAM1 OS=Mus musculus GN=Lrsam1 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 48/72 (66%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           KVLDL +  +  LP+ +G L  L  L+V+  ++  +P+SIGNLL L+TL++K+  ++ELP
Sbjct: 84  KVLDLHENQLTALPDDMGQLTVLQVLNVERNQLTHLPRSIGNLLQLQTLNVKDNKLKELP 143

Query: 61  VEIRNLKRLRYL 72
             +  L+ LR L
Sbjct: 144 DTLGELRSLRTL 155

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) cargos.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9BTT6|LRRC1_HUMAN Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 24/152 (15%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           +V D    P+  LPE    L NL  LSV +  ++ +P++IGNL  L +L+L+  L+  LP
Sbjct: 108 QVADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLP 167

Query: 61  VEIRNLKRLRYLMVYQ---YNYTAGFAA--------------AKLHEGFGSLTNLQKLCI 103
             +  L+RL  L +     YN      A              ++L +  G+L NL  L +
Sbjct: 168 DSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDV 227

Query: 104 IEADSEALKE----LMKLRQL---RNLLKTIP 128
            E   E L E    L  L  L   +NLL+TIP
Sbjct: 228 SENRLERLPEEISGLTSLTDLVISQNLLETIP 259

Homo sapiens (taxid: 9606)

>sp|Q80VQ1|LRRC1_MOUSE Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 24/152 (15%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           +V D    P+  LPE    L NL  LSV +  ++ +P++IGNL  L +L+L+  L+  LP
Sbjct: 108 QVADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLP 167

Query: 61  VEIRNLKRLRYLMVYQ---YNYTAGFAA--------------AKLHEGFGSLTNLQKLCI 103
             +  L+RL  L +     YN      A              ++L +  G+L NL  L +
Sbjct: 168 DSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDV 227

Query: 104 IEADSEALKE----LMKLRQL---RNLLKTIP 128
            E   E L E    L  L  L   +NLL+TIP
Sbjct: 228 SENRLERLPEEISGLTSLTYLVISQNLLETIP 259

Mus musculus (taxid: 10090)

>sp|Q80U72|SCRIB_MOUSE Protein scribble homolog OS=Mus musculus GN=Scrib PE=1 SV=2

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 13/135 (9%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           ++ D    P+  LP+G   L +L +L++ +  ++ +P  +GNL  L TL+L+  L++ LP
Sbjct: 108 EIADFSGNPLSRLPDGFTQLRSLAHLALNDVSLQALPGDVGNLANLVTLELRENLLKSLP 167

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL-KELMKLRQ 119
             +  L +L  L +       G     L +  G+L NL++L +      AL  EL  LR+
Sbjct: 168 ASLSFLVKLEQLDL------GGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGNLRR 221

Query: 120 L------RNLLKTIP 128
           L       N L+ +P
Sbjct: 222 LVCLDVSENRLEELP 236

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Mus musculus (taxid: 10090)

>sp|Q14160|SCRIB_HUMAN Protein scribble homolog OS=Homo sapiens GN=SCRIB PE=1 SV=4

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 13/135 (9%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           ++ D    P+  LP+G   L +L +L++ +  ++ +P  +GNL  L TL+L+  L++ LP
Sbjct: 108 EIADFSGNPLSRLPDGFTQLRSLAHLALNDVSLQALPGDVGNLANLVTLELRENLLKSLP 167

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL-KELMKLRQ 119
             +  L +L  L +       G     L +  G+L NL++L +      AL  EL  LR+
Sbjct: 168 ASLSFLVKLEQLDL------GGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGNLRR 221

Query: 120 L------RNLLKTIP 128
           L       N L+ +P
Sbjct: 222 LVCLDVSENRLEELP 236

Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q66JT1|LRC8E_MOUSE Leucine-rich repeat-containing protein 8E OS=Mus musculus GN=Lrrc8e PE=2 SV=2

 Score = 52.0 bits (123), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 15/139 (10%)

Query: 10  VDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRL 69
           + Y+PE V  L +L  L + + K++ +P  +G   GL  LDL +  +R LP E+  L+ L
Sbjct: 641 IAYVPEHVRKLRSLEQLYLSHNKLETLPTQLGQCFGLRLLDLSHNGLRSLPPELGLLQSL 700

Query: 70  RYLMVYQYNYTAG-----FAAAKLHE---GFGSLTNLQKLCIIEADSEALKELMKLRQLR 121
           ++L +  YN         F   KL     G+  LT L        D  AL+ L +L    
Sbjct: 701 QHLAL-SYNALESLPDELFFCHKLRTLLLGYNHLTQLS------PDVAALQALSRLELKG 753

Query: 122 NLLKTIPPPLAADRSTKKA 140
           N L+T+P  L   +  KK+
Sbjct: 754 NRLETLPEELGDCKGLKKS 772

Mus musculus (taxid: 10090)

>sp|B4LXW1|SUR8_DROVI Leucine-rich repeat protein soc-2 homolog OS=Drosophila virilis GN=Sur-8 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 7/122 (5%)

Query: 3   LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE 62
           L+L    +  LP+ + NL NL  L + N  +K IP +IGNL  L  LDL+   +  LP E
Sbjct: 440 LNLATNALQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIEVLPHE 499

Query: 63  IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL-KELMKLRQLR 121
           I  L  L+ L++     T       L    G L+NL  L + E + + L +E+  L  L 
Sbjct: 500 IGLLHELQRLILQTNQITM------LPRSIGHLSNLTHLSVSENNLQFLPEEIGSLESLE 553

Query: 122 NL 123
           NL
Sbjct: 554 NL 555

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila virilis (taxid: 7244)

>sp|B4JTV9|SUR8_DROGR Leucine-rich repeat protein soc-2 homolog OS=Drosophila grimshawi GN=Sur-8 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 7/122 (5%)

Query: 3   LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE 62
           L+L    +  LP+ + NL NL  L + N  +K IP +IGNL  L  LDL+   +  LP E
Sbjct: 448 LNLATNALQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRKLRILDLEENRIEVLPHE 507

Query: 63  IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL-KELMKLRQLR 121
           I  L  L+ L++     T       L    G L+NL  L + E + + L +E+  L  L 
Sbjct: 508 IGLLHELQRLILQTNQITM------LPRSVGHLSNLTHLSVSENNLQFLPEEIGSLESLE 561

Query: 122 NL 123
           NL
Sbjct: 562 NL 563

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila grimshawi (taxid: 7222)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
332322109	678	hypothetical protein [Beta vulgaris subs	0.553	0.356	0.358	3e-45
87116461	532	unnamed protein product [Ipomoea batatas	0.672	0.552	0.309	4e-43
356562050	470	PREDICTED: uncharacterized protein LOC10	0.471	0.438	0.388	2e-42
357445233	504	hypothetical protein MTR_2g005460 [Medic	0.585	0.507	0.334	9e-42
87116458	532	unnamed protein product [Ipomoea batatas	0.633	0.520	0.315	6e-41
87116463	1898	unnamed protein product [Ipomoea batatas	0.633	0.145	0.315	2e-40
357477937	484	hypothetical protein MTR_4g113700 [Medic	0.585	0.528	0.319	6e-40
357469423	513	hypothetical protein MTR_4g022640 [Medic	0.473	0.403	0.360	1e-38
357519639	423	hypothetical protein MTR_8g091870 [Medic	0.537	0.555	0.323	2e-37
342365825	1613	RNA-directed DNA polymerase [Arachis hyp	0.578	0.156	0.298	1e-36

>gi|332322109|emb|CCA66008.1| hypothetical protein [Beta vulgaris subsp. vulgaris]

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/254 (35%), Positives = 149/254 (58%), Gaps = 12/254 (4%)

Query: 190 DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLE 249
           +D + PTI  +K  + ++  PW+NS+++KL  R + Y +L  RLK  W+   D ++ D+ 
Sbjct: 115 EDESCPTIYLTKEEKRRIRHPWRNSLIIKLFDRRLSYDILVRRLKYKWNLKGDIALTDVG 174

Query: 250 NNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAF 309
           + Y+++R  + ED  + LT+GPW+I   YLT++ W P F S    +     W+R+P ++ 
Sbjct: 175 HAYYVVRFNNMEDYDFVLTQGPWLIGDSYLTIRKWVPNFVSDQEPIKKLTAWVRIPHLSV 234

Query: 310 HLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVE 369
             +DK+ L  IG  +G VIKID +T   +RG++ R  + + LS+PLLS+F ++GK+  V+
Sbjct: 235 EYFDKQFLHSIGSKIGKVIKIDRNTESMDRGQYVRFCIEVDLSKPLLSKFRLNGKVWIVQ 294

Query: 370 YEGLPIICYQCGKYGHNSIVC---QSKQKMNEANNGYSENIIPTNSAGEKDGAVD---MT 423
           YEGL +IC++CG  GH    C   +++QK N  +N      I T + G     V+   + 
Sbjct: 295 YEGLRLICFKCGHLGHKEDTCNVFKAQQKDNTESN------INTAANGADYQQVEENHVP 348

Query: 424 TEKSEKFGPWMIVA 437
            E  EK+G WM+V 
Sbjct: 349 QEVREKYGNWMMVT 362

Source: Beta vulgaris subsp. vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87116461|dbj|BAE79383.1| unnamed protein product [Ipomoea batatas]

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 166/333 (49%), Gaps = 39/333 (11%)

Query: 123 LLKTIPPPLAAD--RSTKKARFRSHEVDADSPSPLSFKDALVHPEQYRSSEDAEMEE-EW 179
           + +  PPP AA   R+TK+                SF +A+     + + E  + +E +W
Sbjct: 18  MTEEAPPPRAAKKIRTTKR----------------SFAEAVTDQSSFNTDERPQSDEYDW 61

Query: 180 DLEPGDVTIGDDGTM---------PTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLC 230
             E  D  +  D  M         P +KFSK ++ +L + W+ +++VK LG+N+   VL 
Sbjct: 62  AFE--DPVVESDSEMDNQDDSDDRPVVKFSKALRQELCREWRMALIVKYLGKNLTANVLN 119

Query: 231 NRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDS 290
            R   +W       +ID+    F++R    +D ++ L +GPW IF +YL  Q W P F+ 
Sbjct: 120 QRAPSLWQLKGRVQIIDIGFGCFVMRFDDKKDYLHVLLDGPWKIFDNYLITQRWVPNFEP 179

Query: 291 TTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRIS 350
            T       VW+RLP ++   +    ++ I + +G  +++D  T  RE+G+FAR AV I 
Sbjct: 180 RTAKFQKMAVWVRLPELSMEYFRDDTIKAILENIGKPLRLDRTTMAREKGRFARAAVEID 239

Query: 351 LSQPLLSRFNIDGKIQKVEYEGLPIICYQCGKYGHNSIVC-----QSKQKMNEANNGYSE 405
           L +PL+S   + G +QKVEYEGL ++C+ CG  GH    C      + + M   +N  +E
Sbjct: 240 LGKPLVSEIWVMGDVQKVEYEGLHVVCFGCGVVGHREQACPLARPTAPETMATGSN--TE 297

Query: 406 NIIPTNSAGEKDGAVDMTTEKSE--KFGPWMIV 436
               T      +G  D  T+ +E  ++GPWMIV
Sbjct: 298 TAADTAEPQPAEGPADAVTQPAERRRYGPWMIV 330

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562050|ref|XP_003549288.1| PREDICTED: uncharacterized protein LOC100791212 [Glycine max]

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 125/206 (60%)

Query: 190 DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLE 249
           D+   P +     I + L  PWQ+++VVKLLG+NIG++ + + L  +W  +  F ++D+ 
Sbjct: 69  DNPLKPIVHIDDSIFNGLCAPWQDALVVKLLGKNIGFQAMKDHLTRIWKLVAGFDILDIG 128

Query: 250 NNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAF 309
           N++++++  + ED    +  GPW+IF HYLT+Q WTP F S T  +D  +VW+R P +  
Sbjct: 129 NHFYMVKFDTTEDRQKVIEGGPWMIFDHYLTIQTWTPDFISPTAKIDKTMVWVRFPSLNL 188

Query: 310 HLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVE 369
             YD+ IL  + + +G  IK+D +T    RG FARI V+I L++P++ +  + G   KVE
Sbjct: 189 IYYDENILLALARAIGTPIKVDSNTLDVRRGHFARICVQIDLNKPVVGKVGLKGYWYKVE 248

Query: 370 YEGLPIICYQCGKYGHNSIVCQSKQK 395
           YEGL  IC  CG YGH +  C +  K
Sbjct: 249 YEGLHRICSSCGCYGHLARECPTPAK 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445233|ref|XP_003592894.1| hypothetical protein MTR_2g005460 [Medicago truncatula] gi|92893902|gb|ABE91952.1| Zinc finger, CCHC-type [Medicago truncatula] gi|355481942|gb|AES63145.1| hypothetical protein MTR_2g005460 [Medicago truncatula]

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 148/272 (54%), Gaps = 16/272 (5%)

Query: 122 NLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSFKDALVHPEQYRSSEDAEMEEEWDL 181
           NL ++  PP    +S++K  FR   ++++   P+  K+ ++  +  R     E+EE   L
Sbjct: 14  NLHQSKKPPDTIKQSSQKPSFRDKLLESNQDIPIREKENMIEKKLVR----IELEEGNRL 69

Query: 182 EPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIH 241
                       +P I    +   +L  PW++++VVKLLG+++GY  + +RL+ +W    
Sbjct: 70  ------------LPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQG 117

Query: 242 DFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVW 301
            F ++D +N +F+++     D    +T GPW+IF H L V  WTP+F S    +D  +VW
Sbjct: 118 GFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVW 177

Query: 302 IRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNI 361
           +R PG+    YD+  L  +   +G  IK+D +T   ERGKFAR+ V I L+ P++ +  +
Sbjct: 178 VRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWV 237

Query: 362 DGKIQKVEYEGLPIICYQCGKYGHNSIVCQSK 393
           +G   KV+YEGL +IC  CG YGH    C  K
Sbjct: 238 NGHWYKVQYEGLHLICTNCGCYGHLGRNCMEK 269

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87116458|dbj|BAE79381.1| unnamed protein product [Ipomoea batatas]

 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 153/298 (51%), Gaps = 21/298 (7%)

Query: 156 SFKDALVHPEQYRSSEDAEMEE-EWDLEPGDVTIGDDGTM---------PTIKFSKRIQD 205
           SF +A+     + + E  +++E +W  E  D  +  D  M         P +KFSK ++ 
Sbjct: 37  SFAEAVTDQSSFNTDERPQLDEYDWAFE--DPVVESDSEMDNQDDSDDRPVVKFSKALRQ 94

Query: 206 KLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVY 265
           +L + W+ +++VK LG+N+   VL  R   +        +ID+    F++R    +D ++
Sbjct: 95  ELCREWRMALIVKYLGKNLTANVLNQRAPSLRQLKGRVQIIDIGFGCFVMRFDDKKDYLH 154

Query: 266 ALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVG 325
            L +GPW IF +YL  Q W P F   T       VW+RLP ++   +    ++ I + +G
Sbjct: 155 VLLDGPWKIFDNYLITQRWVPNFKPRTAKFQKMAVWVRLPELSMEYFRDDTIKAILENIG 214

Query: 326 NVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGLPIICYQCGKYGH 385
             +++D  T  RE+G+FAR AV I L +PL+S   + G +QKVEYEGL ++C+ CG  GH
Sbjct: 215 KPLRLDRTTMAREKGRFARAAVEIDLDKPLVSEIWVMGDVQKVEYEGLHVVCFGCGVVGH 274

Query: 386 NSIVC-----QSKQKMNEANNGYSENIIPTNSAGEKDGAVDMTTEKSE--KFGPWMIV 436
               C      + + M   +N  +E    T      +G  D  T+ +E  ++GPWMIV
Sbjct: 275 REQACPLARPTAPETMATGSN--TETAADTAEPQPAEGPADAVTQPAERRRYGPWMIV 330

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87116463|dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 151/298 (50%), Gaps = 21/298 (7%)

Query: 156 SFKDALVHPEQYRSSEDAEMEE-EWDLEPGDVTIGDDGTM---------PTIKFSKRIQD 205
           SF +A+     + + E  + +E +W  E  +  +  D  M         P +KFSK ++ 
Sbjct: 37  SFAEAVTDQSSFNTDERPQSDEYDWAFE--NPVVESDSEMDNQDDSDDRPVVKFSKALRQ 94

Query: 206 KLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVY 265
           +L + W+ +++VK LG+N+   VL  R   +W       +ID+    F++R    +D ++
Sbjct: 95  ELCREWRMALIVKYLGKNLTANVLNQRAPSLWQLKGRVQIIDIGFGCFVMRFDDKKDYLH 154

Query: 266 ALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVG 325
            L +GPW IF +YL  Q W P F   T       VW+RL  ++   +    ++ I + +G
Sbjct: 155 VLLDGPWRIFDNYLITQRWVPDFKPRTAKFQKMAVWVRLSELSMEYFRDDTIKAILENIG 214

Query: 326 NVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGLPIICYQCGKYGH 385
             + +D  T  RERG+FAR AV I L +PL+S   + G +QKVEYEGL ++C+ CG  GH
Sbjct: 215 KPLGLDRTTMARERGRFARAAVEIDLDKPLVSEIWVMGDVQKVEYEGLHVVCFGCGVVGH 274

Query: 386 NSIVC-----QSKQKMNEANNGYSENIIPTNSAGEKDGAVDMTTEKSE--KFGPWMIV 436
               C      + + M   +N  +E    T      +G  D  T+ +E  ++GPWMIV
Sbjct: 275 REQACPLARPTAPETMATGSN--TETAADTAEPQPAEGPADAVTQPAERRRYGPWMIV 330

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477937|ref|XP_003609254.1| hypothetical protein MTR_4g113700 [Medicago truncatula] gi|355510309|gb|AES91451.1| hypothetical protein MTR_4g113700 [Medicago truncatula]

 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 148/272 (54%), Gaps = 16/272 (5%)

Query: 122 NLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSFKDALVHPEQYRSSEDAEMEEEWDL 181
           N+ ++  PP  +  ST+K  FR   ++++   P+  K+ ++  +  R           +L
Sbjct: 14  NMQQSKKPPDPSKPSTQKLSFRDKLLESNKEIPIREKEDMIEKKLVRI----------EL 63

Query: 182 EPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIH 241
           E G+        +P I    ++  +L   W++++VVKLLG+++GY  +  RL+  W    
Sbjct: 64  EDGN------RLLPKIYIEPQVFQELCTTWKDALVVKLLGKSLGYTTMKERLQKTWKLQG 117

Query: 242 DFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVW 301
            F ++D +N +++++     D    +T GPW+IF H L V  W+P+F S    +D  +VW
Sbjct: 118 GFDIMDNDNGFYMVKFDQAADKEKVITGGPWLIFDHCLAVTHWSPEFASPNAKVDRTVVW 177

Query: 302 IRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNI 361
           +R PG+    YD+ +L  +   +G  IK+D +T   ERGKFAR+ V I L+ P++ +  +
Sbjct: 178 VRFPGLNLVYYDESLLLAMATTLGQPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWV 237

Query: 362 DGKIQKVEYEGLPIICYQCGKYGHNSIVCQSK 393
           +G   KV+Y+GL +IC  CG YGH    C SK
Sbjct: 238 NGHWYKVQYKGLHLICTNCGCYGHLGRNCCSK 269

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469423|ref|XP_003604996.1| hypothetical protein MTR_4g022640 [Medicago truncatula] gi|355506051|gb|AES87193.1| hypothetical protein MTR_4g022640 [Medicago truncatula]

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 122/208 (58%), Gaps = 1/208 (0%)

Query: 194 MPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYF 253
           +P I        +L  PW++++VVKLLG+N+GY  + +RL+ +W     F ++D +N ++
Sbjct: 67  LPKIYLEPTTFQELCTPWKDALVVKLLGKNLGYNTMKDRLQRIWKLQSGFEIMDNDNGFY 126

Query: 254 LIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYD 313
           +++     D    +T GPW+IF H L V  W+P+F S    ++  +VW+R PG+    YD
Sbjct: 127 MVKFDQEADKEKVVTGGPWMIFDHCLAVTHWSPEFASPEARVERTVVWVRFPGLNLVYYD 186

Query: 314 KRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGL 373
           +  L  +   +G  IK+D +T   ERGKFAR+ V I L+ P++ +  ++G   K++YEGL
Sbjct: 187 ESFLLAMASAIGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGHWYKIQYEGL 246

Query: 374 PIICYQCGKYGHNSIVC-QSKQKMNEAN 400
            +IC  CG YGH    C Q   K+++ N
Sbjct: 247 HLICTNCGCYGHLGRNCNQPTTKIDKVN 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519639|ref|XP_003630108.1| hypothetical protein MTR_8g091870 [Medicago truncatula] gi|355524130|gb|AET04584.1| hypothetical protein MTR_8g091870 [Medicago truncatula]

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 129/247 (52%), Gaps = 12/247 (4%)

Query: 194 MPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYF 253
           +P +    +I  +L  PW++++VVKLL +N+GY  +  RL  +W     F ++D +N ++
Sbjct: 18  LPKVYLEPQIFQELCTPWKDALVVKLLRKNLGYNTMKERLHKVWKTQGGFEIMDNDNGFY 77

Query: 254 LIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYD 313
           +++     D    +T GPW+IF H + V  W+P+F S    ++  +VW+R PG+    YD
Sbjct: 78  MVKFDQTSDKEKVITGGPWMIFDHCMVVAHWSPEFASPNAKVERTVVWVRFPGLNLVYYD 137

Query: 314 KRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGL 373
           +  L  +   +G  IK+D +T   ERGKFAR+ V I L+ P++ +  ++G   K++YE L
Sbjct: 138 ENFLLAMASAIGRPIKVDTNTLNVERGKFARVCVEIDLTAPVVGKIWVNGHWYKIQYEWL 197

Query: 374 PIICYQCGKYGHNSIVCQSKQ---KMNEANNGYSENIIPTNSAGEKDGAVDMTTEKSEKF 430
            +IC  CG  GH    C  K        A  G S   + T    E         E +E +
Sbjct: 198 HLICTNCGCCGHLRRNCSQKSTTLHQAAATQGSSHPPVSTQRNDE---------EINEFY 248

Query: 431 GPWMIVA 437
           G WM+V 
Sbjct: 249 GDWMLVT 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342365825|gb|AEL30359.1| RNA-directed DNA polymerase [Arachis hypogaea]

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 139/258 (53%), Gaps = 5/258 (1%)

Query: 150 DSPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVTIGDDGTM--PTIKFSKRIQDKL 207
           + PS +SF+D ++  E+   S+   +      +      G  G    P++ F+K  +  L
Sbjct: 30  EKPSKVSFRDKVIGAEK---SKAFALVGSLSGDGIATVTGKQGDSHPPSVSFTKEAKSCL 86

Query: 208 IKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYAL 267
            +P++ ++V+K+L ++ GY  L ++L+++W     F ++D+   YFL +     D    +
Sbjct: 87  AEPYKEAIVIKVLDKHYGYTALMHKLRIVWRIKGGFDLLDVGFGYFLAKFDIATDREKVI 146

Query: 268 TEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNV 327
             GPW+I GHY+ V+PW   F        S +VWI++ G+    Y ++ + +I   +G  
Sbjct: 147 LGGPWLIDGHYVAVKPWDVDFRPCEKSFGSTLVWIQVSGLPIWCYQEQAMLRIASAIGIP 206

Query: 328 IKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKVEYEGLPIICYQCGKYGHNS 387
           +K+D  T L ERGK+AR  V+I+L  P++    ++G   +VEYE LP+IC  C +YGH+ 
Sbjct: 207 VKVDLATKLAERGKYARACVQINLELPVIKHIIVEGVTYEVEYESLPLICATCARYGHDK 266

Query: 388 IVCQSKQKMNEANNGYSE 405
            +C  K+ +    N + +
Sbjct: 267 SLCMEKESLEGNENSFGD 284

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
TAIR|locus:2045756	515	AT2G01050 [Arabidopsis thalian	0.521	0.442	0.317	1.8e-32
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.359	0.169	0.308	3.9e-11
TAIR|locus:1009023409	361	AT5G36228 [Arabidopsis thalian	0.345	0.418	0.25	9.8e-08
UNIPROTKB|F1RS16	723	LRSAM1 "Uncharacterized protei	0.164	0.099	0.430	6.9e-07
TAIR|locus:2827815	307	AT2G17920 [Arabidopsis thalian	0.331	0.472	0.224	8.9e-07
RGD|1564403	727	Lrsam1 "leucine rich repeat an	0.164	0.099	0.416	1.5e-06
UNIPROTKB|E2RR59	728	LRSAM1 "Uncharacterized protei	0.164	0.098	0.402	1.9e-06
UNIPROTKB|J9P525	728	LRSAM1 "Uncharacterized protei	0.164	0.098	0.402	1.9e-06
UNIPROTKB|Q08E63	724	LRSAM1 "Uncharacterized protei	0.164	0.099	0.402	2.4e-06
TAIR|locus:2146990	367	AT5G25200 "AT5G25200" [Arabido	0.343	0.408	0.243	3.7e-06

TAIR|locus:2045756 AT2G01050 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 74/233 (31%), Positives = 128/233 (54%)

Query:   189 GDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDL 248
             G+D   P I   + + + +   W+  ++VK+LG  I   VL  +L+ +W      +V+DL
Sbjct:    56 GEDEE-PVITIGEEVLEAMNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDL 114

Query:   249 ENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMA 308
                +F+IR +  E+ + ALT GPW + G+YL VQ W+ +FD    D+ +  VW+RL  + 
Sbjct:   115 PRQFFMIRFELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIP 174

Query:   309 FHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRFNIDGKIQKV 368
             ++ Y + +L +I + +G  +K+D +T   ++G+FAR+ + ++L++PL     I+G    V
Sbjct:   175 YNYYHRCLLMEIARGLGRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRYFV 234

Query:   369 EYEGLPIICYQCGKYGHNSIVCQSKQ--KMNEANNGYSEN-IIPTNSAGEKDG 418
              YEGL  IC  CG YGH    C      K++      ++  ++P    G+ DG
Sbjct:   235 AYEGLSKICSSCGIYGHLVHSCPRNVVVKVSAGAETVTDRAVVPVGMEGD-DG 286

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 54/175 (30%), Positives = 88/175 (50%)

Query:     1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             + LDLED+ +  LP+ +  +FNL YL++  T+VK +PK+   L+ LETL+ K++ + ELP
Sbjct:   584 RALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELP 643

Query:    61 VEIRNLKRLRYLMVYQ--------YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALK 112
             + +  LK+LRYL+ ++        +NY  G    ++      L +LQ +    A+ E +K
Sbjct:   644 LGMWKLKKLRYLITFRRNEGHDSNWNYVLG---TRVVPKIWQLKDLQVMDCFNAEDELIK 700

Query:   113 ELMKLRQLRNL-LKTIPPPLAAD-----RSTKKARFRSHEVDADSPSPLSFKDAL 161
              L  + QL  + L  +      D        K+ RF S     D   PL   D +
Sbjct:   701 NLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSL-TSIDEEEPLEIDDLI 754

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:1009023409 AT5G36228 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.8e-08, P = 9.8e-08
 Identities = 40/160 (25%), Positives = 70/160 (43%)

Query:   248 LENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAI-VWIRLPG 306
             L++  F +R +S  D +  L   PWV    ++ +Q W    D  T D  + I VW+ + G
Sbjct:    73 LDDRCFQVRFRSEIDLLNGLRRAPWVFNEWFIALQRWE---DFPTEDFLTFIDVWVHIRG 129

Query:   307 MAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPL--LSRFNIDGK 364
             +      +R +  I   +G V+ +D++     +  F R+ VR+  ++PL    R     +
Sbjct:   130 IPLPYVSERTVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASR 189

Query:   365 IQKV---EYEGLPIICYQCGKYGHNSIVCQSKQKMNEANN 401
              + +   EYE L  +C  C +  H    C       E +N
Sbjct:   190 ERAMIGFEYEKLQRVCTNCCRVNHQVSHCPYVVHQEEMDN 229

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RS16 LRSAM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 31/72 (43%), Positives = 48/72 (66%)

Query:     1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             KVLDL D  +  LP+ +G L  L  L+V+  ++  +P+SIGNL+ L+TL+LK+  ++ELP
Sbjct:    84 KVLDLHDNQLTALPDDIGQLTALQVLNVERNQLTSLPRSIGNLIQLQTLNLKDNKLKELP 143

Query:    61 VEIRNLKRLRYL 72
               +  L+ LR L
Sbjct:   144 DTLGELRSLRTL 155

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2827815 AT2G17920 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 8.9e-07, P = 8.9e-07
 Identities = 35/156 (22%), Positives = 72/156 (46%)

Query:   248 LENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPW--TPQFDSTTTDLDSAIVWIRLP 305
             +++ Y     +S  D +      PW+    ++  Q W   P  +  TT +D   +W+++ 
Sbjct:    73 IDDTYVQFLFQSEMDLLSVQRREPWLFNNWFVASQRWQPAPALNFVTT-ID---LWVQMR 128

Query:   306 GMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPL--LSRFNID- 362
             G+ F    +    +I Q +G +I +D+H     +  + R+ VR+ ++  L    R   + 
Sbjct:   129 GIPFLYVSEETALEIAQEIGAIISLDFHDTTSTQIAYIRVRVRVGITDSLRFFQRITFES 188

Query:   363 GK--IQKVEYEGLPIICYQCGKYGHNSIVCQSKQKM 396
             G+  + + +YE L  IC  C ++ HN   C  + ++
Sbjct:   189 GESALIRFQYERLRRICSNCFRFTHNRNYCPYRPRV 224

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1564403 Lrsam1 "leucine rich repeat and sterile alpha motif containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 144 (55.7 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 30/72 (41%), Positives = 48/72 (66%)

Query:     1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             KVLDL D  +  LP+ +G L  L  L+V+  ++  +P+S+GNLL L+TL++K+  ++ELP
Sbjct:    84 KVLDLHDNQLTALPDDIGQLTALQVLNVERNQLTHLPRSVGNLLQLQTLNVKDNKLKELP 143

Query:    61 VEIRNLKRLRYL 72
               +  L+ LR L
Sbjct:   144 DTLGELRSLRTL 155

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=ISO

GO:0044425 "membrane part" evidence=ISO

GO:0045806 "negative regulation of endocytosis" evidence=ISO

GO:0046755 "non-lytic virus budding" evidence=ISO

GO:0051865 "protein autoubiquitination" evidence=ISO

GO:0070086 "ubiquitin-dependent endocytosis" evidence=ISO

UNIPROTKB|E2RR59 LRSAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 29/72 (40%), Positives = 48/72 (66%)

Query:     1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             KVLDL +  +  LP+ +G L  L  L+V+  ++  +P+SIGNL+ L+TL++K+  ++ELP
Sbjct:    84 KVLDLHNNQLSALPDDIGQLTALQVLNVEKNQLTYLPRSIGNLIQLQTLNMKDNKLKELP 143

Query:    61 VEIRNLKRLRYL 72
               +  L+ LR L
Sbjct:   144 DTVGELRSLRTL 155

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P525 LRSAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 29/72 (40%), Positives = 48/72 (66%)

Query:     1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             KVLDL +  +  LP+ +G L  L  L+V+  ++  +P+SIGNL+ L+TL++K+  ++ELP
Sbjct:    84 KVLDLHNNQLSALPDDIGQLTALQVLNVEKNQLTYLPRSIGNLIQLQTLNMKDNKLKELP 143

Query:    61 VEIRNLKRLRYL 72
               +  L+ LR L
Sbjct:   144 DTVGELRSLRTL 155

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q08E63 LRSAM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 29/72 (40%), Positives = 48/72 (66%)

Query:     1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             KVLDL D  +  LP+ +G L  L  L+++  ++  +P+SIGNL+ L+TL++K+  ++ELP
Sbjct:    84 KVLDLHDNQLTALPDDIGQLTALQVLNMERNQLTYLPRSIGNLIQLQTLNVKDNRLKELP 143

Query:    61 VEIRNLKRLRYL 72
               +  L+ LR L
Sbjct:   144 DTLGELRSLRTL 155

GO:0005737 "cytoplasm" evidence=ISS

GO:0046755 "non-lytic virus budding" evidence=ISS

GO:0044425 "membrane part" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070086 "ubiquitin-dependent endocytosis" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

GO:0045806 "negative regulation of endocytosis" evidence=ISS

GO:0030163 "protein catabolic process" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2146990 AT5G25200 "AT5G25200" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 40/164 (24%), Positives = 73/164 (44%)

Query:   239 QIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPW--TPQFDSTTTDLD 296
             Q+H   V+D     FL    +  D +      PW+    ++    W   P  +  TT +D
Sbjct:    67 QVHG-RVLDATYVQFLFA--NEIDLMMVQRREPWLFNNWFVAATRWQVAPAHNLVTT-ID 122

Query:   297 SAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPL- 355
                +W+++ G+      +  + +I Q +G +I +D+H A   +  F R+ VR  ++  L 
Sbjct:   123 ---LWVQIRGIPLPYVSEETVLEIAQDLGEIISLDFHEATSPQIAFIRVRVRFGITDRLR 179

Query:   356 -LSRFNID-GKIQKV--EYEGLPIICYQCGKYGHNSIVCQSKQK 395
                R   D G+   +  +YE L  +C  C ++ HN   C  +Q+
Sbjct:   180 FFQRIIFDSGETATIRFQYERLRRLCSSCFRFTHNRAYCPYRQR 223

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	437
pfam14111	153	pfam14111, DUF4283, Domain of unknown function (DU	1e-32
pfam14392	49	pfam14392, zf-CCHC_4, Zinc knuckle	8e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|222549 pfam14111, DUF4283, Domain of unknown function (DUF4283)

 Score =  120 bits (304), Expect = 1e-32
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 1/153 (0%)

Query: 197 IKFSKRIQDKLIKPWQNSVVVKLLG-RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI 255
           ++  +   ++L++  +  +V + L  R    + L + +   W       V  L +  FL 
Sbjct: 1   VEVPEEELEELLERLRWCLVGRWLSPRGPDLEALRSWMAKAWGLKGGLGVASLGDGLFLF 60

Query: 256 RLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKR 315
             +S EDA   L  GPW+  G  L ++ W+P+   +  +L    VW+R+ G+  HL+ + 
Sbjct: 61  EFESEEDAERVLRRGPWLFGGWALILERWSPEVGCSEEELKRIPVWVRIYGLPLHLWSEE 120

Query: 316 ILRKIGQLVGNVIKIDYHTALRERGKFARIAVR 348
           IL++IG   G  + +D  T  RER +FARI V+
Sbjct: 121 ILKRIGSACGGFVAVDEDTEGRERLQFARILVK 153

This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues. Length = 153

>gnl|CDD|222730 pfam14392, zf-CCHC_4, Zinc knuckle

 Score = 48.0 bits (115), Expect = 8e-08
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 349 ISLSQPLLSRFNIDGK-----IQKVEYEGLPIICYQCGKYGHNSIVC 390
           + +S+PL    N+        + KV YE LP  C+ CG+ GH+   C
Sbjct: 1   LDVSKPLRFEVNVKFPSGEEAVVKVRYERLPNFCFHCGRLGHSDKEC 47

The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. This particular family is found in plant proteins. Length = 49

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 6e-06
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           K LDL D  ++ LP  + NL NL  L +    +  +PK + NL  L  LDL    + +LP
Sbjct: 143 KELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202

Query: 61  VEIRNLKRLRYLMVYQYNYTA---GFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKL 117
            EI  L  L  L +   +        +  K   G   L+N +   + E+    L  L  L
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGL-ELSNNKLEDLPESIGN-LSNLETL 260

Query: 118 RQLRNLLKTIPP 129
               N + +I  
Sbjct: 261 DLSNNQISSISS 272

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 15/172 (8%)

Query: 1   KVLDLEDAPVDYLPEGVGNL-FNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVREL 59
             LDL++  +  +P  +G L  NL  L + + K++ +P  + NL  L+ LDL    + +L
Sbjct: 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL 178

Query: 60  PVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI----IEADSEALKELM 115
           P  + NL  L  L +     +       L      L+ L++L +    I     +L  L 
Sbjct: 179 PKLLSNLSNLNNLDLSGNKIS------DLPPEIELLSALEELDLSNNSIIELLSSLSNLK 232

Query: 116 KLRQLR---NLLKTIPPPLAADRSTKKARFRSHEV-DADSPSPLSFKDALVH 163
            L  L    N L+ +P  +    + +     ++++    S   L+    L  
Sbjct: 233 NLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 13  LPEGVGNLFNLH--YLSVKNTKVKIIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKRL 69
           +P  +G + +L   YL   N   +I P  IG L  L  LDL  N L   +P  + NLK L
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262

Query: 70  RYLMVYQ 76
           +YL +YQ
Sbjct: 263 QYLFLYQ 269

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 14/128 (10%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLK-RLRY 71
             E + NL  L  L +   +++     +  L  L +LDL N  + ++P  I  LK  L+ 
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKE 144

Query: 72  LMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI-------IEADSEALKELMKLRQLRNLL 124
           L +             L     +L NL+ L +       +      L  L  L    N +
Sbjct: 145 LDLSDNKIE------SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI 198

Query: 125 KTIPPPLA 132
             +PP + 
Sbjct: 199 SDLPPEIE 206

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 46/179 (25%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLK------------------- 52
           +P  +GNL NL YL +   K+   IP SI +L  L +LDL                    
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Query: 53  ------NTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEA 106
                 N    ++PV + +L RL+ L ++   ++             +L     L +++ 
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK--------NLGKHNNLTVLDL 363

Query: 107 DSEALK-----------ELMKLRQLRNLLKT-IPPPLAADRSTKKARFRSHEVDADSPS 153
            +  L             L KL    N L+  IP  L A RS ++ R + +    + PS
Sbjct: 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	437
PF14111	153	DUF4283: Domain of unknown function (DUF4283)	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.7
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.53
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
PF14392	49	zf-CCHC_4: Zinc knuckle	99.47
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.46
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.46
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.27
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
PLN03150	623	hypothetical protein; Provisional	98.94
PLN03150	623	hypothetical protein; Provisional	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.69
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.63
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.62
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.51
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.51
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.47
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.34
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.26
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.02
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.86
PRK15386	426	type III secretion protein GogB; Provisional	97.76
PRK15386	426	type III secretion protein GogB; Provisional	97.56
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.35
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.3
PF00098	18	zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi	97.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.91
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.83
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.83
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.62
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.62
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.37
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.31
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.17
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.49
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.23
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	94.67
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.45
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.43
PF13696	32	zf-CCHC_2: Zinc knuckle	93.83
smart00370	26	LRR Leucine-rich repeats, outliers.	93.8
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.8
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.08
smart00343	26	ZnF_C2HC zinc finger.	92.2
smart00370	26	LRR Leucine-rich repeats, outliers.	90.0
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.0
PF15288	40	zf-CCHC_6: Zinc knuckle	89.39
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.34
COG5082	190	AIR1 Arginine methyltransferase-interacting protei	80.17

>PF14111 DUF4283: Domain of unknown function (DUF4283)

Probab=99.93  E-value=1.3e-26  Score=198.55  Aligned_cols=151  Identities=33%  Similarity=0.676  Sum_probs=144.5

Q ss_pred             eechHHHhhhcccccceEEEEecC-CCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHHHhHHcCceEEcC
Q 047084          198 KFSKRIQDKLIKPWQNSVVVKLLG-RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFG  276 (437)
Q Consensus       198 ~l~~n~l~~l~~~~~~~l~~~l~~-~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~~vl~~~pw~~~~  276 (437)
                      .++..+.++....|+.++++++.+ .+++...+...+..+|+..+.+++.++++|+|+++|++.+|+.+|+.++||.+++
T Consensus         2 ~i~~~~~~~~~~~~~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~~~p~~~~~   81 (153)
T PF14111_consen    2 KISEEEVEELLERWQLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLKGGPWNFNG   81 (153)
T ss_pred             EeCHHHHHhHHHhcCeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEecccccccc
Confidence            466777777888999999999986 6689999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeecCCCCCCCcccccceeEEEEecCCccccccHHHHHHHhhccCcEEEEecccccccCCcEEEEEEE
Q 047084          277 HYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVR  348 (437)
Q Consensus       277 ~~l~l~~w~~~~~~~~~~~~~~p~Wvri~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~~~~~~~~~~~rv~V~  348 (437)
                      +.+.+++|++.+++.+..+.+.++|||++|||++||+++++..||+.+|+++++|..|....+++||||+|+
T Consensus        82 ~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~~~~~~~~Rv~V~  153 (153)
T PF14111_consen   82 HFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLKRTRLDFARVRVE  153 (153)
T ss_pred             cchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCCcccccEEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999995

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=3.6e-24  Score=206.42  Aligned_cols=296  Identities=14%  Similarity=0.120  Sum_probs=156.5

Q ss_pred             EEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      .||||.|.|+++|. +|..=.++++|+|++|.|+.+. ..|.++.+|.+|.|++|+++.+|.. |.+|++|+.|+|..|+
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            45666666666654 3444455666666666665443 3455555666666666666666553 5556666666666665


Q ss_pred             cccccccccccccccCCccCcEEEeecCChH--------hHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSE--------ALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~--------~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      |.-.-     -..|.++.+|+.|.|..|...        .+.+|+.|..-.|.+..+. .++.++++|+.|+||.|.|..
T Consensus       233 irive-----~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r  307 (873)
T KOG4194|consen  233 IRIVE-----GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR  307 (873)
T ss_pred             eeeeh-----hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe
Confidence            54110     112344444444444444311        1112222222223333222 233444444444444444443


Q ss_pred             CCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccc--c
Q 047084          150 DSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPW--Q  212 (437)
Q Consensus       150 ~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~--~  212 (437)
                      .-+..+    .+.++.++.|++..     +.....++.|+|++|.++....      .++.++.+..|.++...+..  .
T Consensus       308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~  387 (873)
T KOG4194|consen  308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA  387 (873)
T ss_pred             eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence            223322    23334444444411     1112223444444444442211      23333334444333222211  0


Q ss_pred             ceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE----EeCChhhHHHhHHcCceEEcCceEEEeecCCCC
Q 047084          213 NSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI----RLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQF  288 (437)
Q Consensus       213 ~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~----~f~~~~d~~~vl~~~pw~~~~~~l~l~~w~~~~  288 (437)
                      +.-+.++..+.+..|+++.+.+++|.....++.+++++|.+.-    .|+..+-.+.|+......|||+...+..|--+-
T Consensus       388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~  467 (873)
T KOG4194|consen  388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRR  467 (873)
T ss_pred             hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhc
Confidence            1114456677899999999999999999999999999998874    477776666689999999999999999996543


Q ss_pred             CC--CcccccceeEEE
Q 047084          289 DS--TTTDLDSAIVWI  302 (437)
Q Consensus       289 ~~--~~~~~~~~p~Wv  302 (437)
                      .+  +...-...|-|.
T Consensus       468 ~lq~sv~a~CayPe~L  483 (873)
T KOG4194|consen  468 KLQSSVIAKCAYPEPL  483 (873)
T ss_pred             ccccceeeeccCCccc
Confidence            22  222233455554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=1.2e-22  Score=197.33  Aligned_cols=241  Identities=18%  Similarity=0.235  Sum_probs=172.2

Q ss_pred             EEEecCCCC--CcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            2 VLDLEDAPV--DYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         2 ~L~L~~n~l--~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      .+++.+|++  .-+|..+.+|..|+.||||+|++.++|..+.+-.++-.|+|++|.|..||.. |.+|+.|-+||||+|+
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            456677877  5678888889999999999999988888888888888999998888889887 6788889999999998


Q ss_pred             cccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhcc-----cccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQLR-----NLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l~-----n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      +.      .+|..+..+..|++|.|++|..     ..+++++.|..|.     .-...+|.++..+.+|..+|||.|.+.
T Consensus       162 Le------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  162 LE------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             hh------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence            87      6788888888899999998873     3335555555551     123567778888888888888888887


Q ss_pred             CCCCCCc----hhhhhhcCCCCCCC---Cchh-ccceeeecCCCCcccCCC-----CC----------------------
Q 047084          149 ADSPSPL----SFKDALVHPEQYRS---SEDA-EMEEEWDLEPGDVTIGDD-----GT----------------------  193 (437)
Q Consensus       149 ~~~p~~~----~~~~~~l~~n~l~~---~~~~-~~~~~L~L~~n~l~~~~~-----~~----------------------  193 (437)
                       ..|..+    ++..+.+++|+|.-   .... ..++.|+||.|+|+..+.     ..                      
T Consensus       236 -~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK  314 (1255)
T KOG0444|consen  236 -IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK  314 (1255)
T ss_pred             -cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence             677654    56677777887722   1111 134667777777774433     11                      


Q ss_pred             ---CCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcE
Q 047084          194 ---MPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNY  252 (437)
Q Consensus       194 ---lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~  252 (437)
                         +..+....|.+.-.++.  .|-++++..+.+++|.+.+ +|.+...+..++++|+..|-
T Consensus       315 L~~Levf~aanN~LElVPEg--lcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  315 LIQLEVFHAANNKLELVPEG--LCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhhHHHHhhccccccCchh--hhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence               12222333333323222  3445677777888888764 78888889999999999884

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=2.6e-20  Score=205.05  Aligned_cols=249  Identities=18%  Similarity=0.242  Sum_probs=148.6

Q ss_pred             CEEEecCCCCC-cCCccccCCCCCcEEEeecccC-cccChhhhcccCCCEEEccCCc-ccccchhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTL-VRELPVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~l~~~~-~~~lp~~~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.+. .+|..++++.+|++|+|++|.+ +.+|..++++++|++|++++|. .+.+|..++++++|++|++++|
T Consensus       143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence            45666666663 5666777777777777777776 4677777777777777777444 4466777777777777777777


Q ss_pred             ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---ccc-cccCCchhhcCCCCCeEEeeCCcCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNL-LKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~-~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      .+++.     +|..++++++|++|++++|.     +..+.++++|+.+   +|. .+.+|..+.++++|++|++++|.++
T Consensus       223 ~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        223 NLSGE-----IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             ccCCc-----CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            77653     36677777777777777775     3445555555544   333 3566777777777777777777777


Q ss_pred             CCCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccccc
Q 047084          149 ADSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQN  213 (437)
Q Consensus       149 ~~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~  213 (437)
                      +.+|..+    ++..+.++.|.+..     +.....++.|++++|+++...+      ..+..+.++.|.+....+.+. 
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~-  376 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL-  376 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH-
Confidence            7666543    34455566666511     1223334667777777652221      234445555554443222110 


Q ss_pred             eEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE
Q 047084          214 SVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI  255 (437)
Q Consensus       214 ~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~  255 (437)
                      +-..++..+.++.|.+.+.++..+.....++.+++++|.+..
T Consensus       377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~  418 (968)
T PLN00113        377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG  418 (968)
T ss_pred             hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence            111223334455555555555555555555555555555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.80  E-value=3.1e-20  Score=179.44  Aligned_cols=245  Identities=18%  Similarity=0.253  Sum_probs=157.7

Q ss_pred             CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~   78 (437)
                      +.||+++|++.++. ..|.++++|+.+++.+|.+..+|...+...+|+.|+|.+|.|..+.. ++.-++.|+.||||.|.
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~  160 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL  160 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence            46888988888884 45788899999999998888888777777778899998888888765 48888889999999998


Q ss_pred             cccccccccccc-cccCCccCcEEEeecCC--------hHhHhhccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCC
Q 047084           79 YTAGFAAAKLHE-GFGSLTNLQKLCIIEAD--------SEALKELMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        79 l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~--------~~~~~~L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~  148 (437)
                      |+      ++|. +|-.-.++++|+|++|+        +..+.+|..|+..+|.++.+|. .|.++++|+.|+|..|+|.
T Consensus       161 is------~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  161 IS------EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hh------cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            88      4453 35556688889988887        4445566666666888888885 4556888888888888886


Q ss_pred             C----CCCCCchhhhhhcCCCCCC-----CCchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcc-ccc
Q 047084          149 A----DSPSPLSFKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIK-PWQ  212 (437)
Q Consensus       149 ~----~~p~~~~~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~-~~~  212 (437)
                      -    ++...-++..+-+..|.+.     .+-..+..+.|+|+.|+++....      ..+..++++.|.++.+.. .|.
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence            1    1222235555666666662     23334445667777777652211      123334444444444322 332


Q ss_pred             ceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEE
Q 047084          213 NSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYF  253 (437)
Q Consensus       213 ~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f  253 (437)
                      .  ..++..+++++|+++..-+..+..+..++.+.+++|.+
T Consensus       315 f--tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi  353 (873)
T KOG4194|consen  315 F--TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI  353 (873)
T ss_pred             h--cccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence            2  23333344455555544444444444555555555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.79  E-value=6.4e-20  Score=201.98  Aligned_cols=251  Identities=21%  Similarity=0.258  Sum_probs=163.8

Q ss_pred             CEEEecCCCC-CcCCccccCCCCCcEEEeecccC-cccChhhhcccCCCEEEccCCcc-cccchhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPV-DYLPEGVGNLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTLV-RELPVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l-~~lp~~~~~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~l~~~~~-~~lp~~~~~L~~L~~L~l~~n   77 (437)
                      |+|+|++|.+ +.+|..+.++++|++|+|++|.+ +.+|..++++++|++|++++|.+ +.+|..++++++|++|++++|
T Consensus       167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  246 (968)
T PLN00113        167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN  246 (968)
T ss_pred             CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence            5789999987 57788899999999999999988 47888899999999999995554 478888999999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---cccc-ccCCchhhcCCCCCeEEeeCCcCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLL-KTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~-~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      .+++.     +|..++++++|++|++++|.     +..+.++.+|+.+   +|.+ +.+|..+..+++|++|++++|.++
T Consensus       247 ~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        247 NLTGP-----IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             eeccc-----cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            88864     47788888888888888886     3445555555444   3433 567777777888888888888887


Q ss_pred             CCCCCCc----hhhhhhcCCCCCC--C---CchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhccccc-
Q 047084          149 ADSPSPL----SFKDALVHPEQYR--S---SEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQ-  212 (437)
Q Consensus       149 ~~~p~~~----~~~~~~l~~n~l~--~---~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~-  212 (437)
                      +.+|..+    ++..+.++.|.+.  .   ......++.|++++|+++...+      ..+..+.++.|.+....+.+. 
T Consensus       322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~  401 (968)
T PLN00113        322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG  401 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence            7666544    3445566666652  1   1122334567777777652221      223334444443332211110 


Q ss_pred             ----------------------ceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEE
Q 047084          213 ----------------------NSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIR  256 (437)
Q Consensus       213 ----------------------~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~  256 (437)
                                            ......+..++++.|.+.+..+..+...+.++.+++++|.+...
T Consensus       402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~  467 (968)
T PLN00113        402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG  467 (968)
T ss_pred             CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence                                  00111222344555555555555444556666666666666543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=5.5e-21  Score=158.04  Aligned_cols=131  Identities=22%  Similarity=0.351  Sum_probs=68.4

Q ss_pred             EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084            3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG   82 (437)
Q Consensus         3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~   82 (437)
                      |-||+|+++.+|+.+..|.+|+.|++++|+|.++|..+..|++|+.|+++-|++..+|.+|+.++.|+.|||.+|++...
T Consensus        38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~  117 (264)
T KOG0617|consen   38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN  117 (264)
T ss_pred             hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555422


Q ss_pred             cccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCC
Q 047084           83 FAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSP  154 (437)
Q Consensus        83 ~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~  154 (437)
                          .+|..|..|+.|+-|++++|.                +..+|+.++++++|+.|.+.+|.+- ++|..
T Consensus       118 ----~lpgnff~m~tlralyl~dnd----------------fe~lp~dvg~lt~lqil~lrdndll-~lpke  168 (264)
T KOG0617|consen  118 ----SLPGNFFYMTTLRALYLGDND----------------FEILPPDVGKLTNLQILSLRDNDLL-SLPKE  168 (264)
T ss_pred             ----cCCcchhHHHHHHHHHhcCCC----------------cccCChhhhhhcceeEEeeccCchh-hCcHH
Confidence                345555555555555555554                4444555555555555555555544 34433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.73  E-value=8e-20  Score=177.85  Aligned_cols=244  Identities=17%  Similarity=0.201  Sum_probs=166.0

Q ss_pred             EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcc--cccchhhcCCcCCcEEeceeeccc
Q 047084            3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLV--RELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~--~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      |.|...++.++|+.++.|.+|++|.+++|++..+...+..|++|+.+.+..|.+  +.+|+++..|..|+.||||+|+++
T Consensus        37 LkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~  116 (1255)
T KOG0444|consen   37 LKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR  116 (1255)
T ss_pred             EEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh
Confidence            445555566666666666666666666666666666666666666666663333  357888888888888888888888


Q ss_pred             cccccccccccccCCccCcEEEeecCChHhH-----hhcc---chHhcccccccCCchhhcCCCCCeEEeeCCcCC----
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL-----KELM---KLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD----  148 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~-----~~L~---~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~----  148 (437)
                            ++|..+..-.++-.|+||+|+.+.+     .+|+   -|+..+|.+..+|+.+..+..|++|+|++|++.    
T Consensus       117 ------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL  190 (1255)
T KOG0444|consen  117 ------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL  190 (1255)
T ss_pred             ------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence                  6788888888888888888884443     2344   344447888899999999999999999999886    


Q ss_pred             CCCCCCchhhhhhcCCCCC------CCCchhccceeeecCCCCcccCCC-----CCCCeEeechHHHhhhcccccceEEE
Q 047084          149 ADSPSPLSFKDALVHPEQY------RSSEDAEMEEEWDLEPGDVTIGDD-----GTMPTIKFSKRIQDKLIKPWQNSVVV  217 (437)
Q Consensus       149 ~~~p~~~~~~~~~l~~n~l------~~~~~~~~~~~L~L~~n~l~~~~~-----~~lp~l~l~~n~l~~l~~~~~~~l~~  217 (437)
                      ..+|...++..+.+++.+-      ++......+..+|||.|+|...+.     .++..+.++.|.++++.--.  ....
T Consensus       191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~--~~W~  268 (1255)
T KOG0444|consen  191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE--GEWE  268 (1255)
T ss_pred             hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH--HHHh
Confidence            3466665666555554332      222233344557888888874443     45556677777777654310  0124


Q ss_pred             EecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE
Q 047084          218 KLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI  255 (437)
Q Consensus       218 ~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~  255 (437)
                      ++.++++|.|+++. +|.+.+.+++++-+.+.+|.+.|
T Consensus       269 ~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  269 NLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTF  305 (1255)
T ss_pred             hhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccc
Confidence            56677888888864 67777788888888888888775

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.70  E-value=3e-19  Score=165.80  Aligned_cols=225  Identities=24%  Similarity=0.289  Sum_probs=151.3

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTA   81 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~   81 (437)
                      +|++++|++.++|++++.+..++.|+.++|++.++|+.++.+.+|..|+.+.|.+..+|++++.+-.|..|+..+|+++ 
T Consensus        72 vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-  150 (565)
T KOG0472|consen   72 VLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-  150 (565)
T ss_pred             EEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc-
Confidence            4566666666666666666666666666666666666666666666666666666666666666666666666666666 


Q ss_pred             ccccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCC--
Q 047084           82 GFAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSP--  152 (437)
Q Consensus        82 ~~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p--  152 (437)
                           .+|++++.+.+|..|++.+|.    +...-+++.|+.+   .|.++.+|+.++.+.+|..|+|.+|+|. .+|  
T Consensus       151 -----slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPef  224 (565)
T KOG0472|consen  151 -----SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLPEF  224 (565)
T ss_pred             -----cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCCCC
Confidence                 557777777777777777776    2222335555555   6889999999999999999999999998 555  


Q ss_pred             -CCchhhhhhcCCCCCCCC-----chhccceeeecCCCCcccCCC-----CCCCeEeechHHHhhhcccccceEEEEecC
Q 047084          153 -SPLSFKDALVHPEQYRSS-----EDAEMEEEWDLEPGDVTIGDD-----GTMPTIKFSKRIQDKLIKPWQNSVVVKLLG  221 (437)
Q Consensus       153 -~~~~~~~~~l~~n~l~~~-----~~~~~~~~L~L~~n~l~~~~~-----~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~  221 (437)
                       ..-.+.++..+.|++...     .....+-.|||..|+++..++     .++..+.+++|.++.++......   .+..
T Consensus       225 ~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl---hL~~  301 (565)
T KOG0472|consen  225 PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL---HLKF  301 (565)
T ss_pred             CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc---eeee
Confidence             444678999999998432     234455779999999985444     34566777888877776654332   2223


Q ss_pred             CCcCHHHHHHHHHhc
Q 047084          222 RNIGYKVLCNRLKVM  236 (437)
Q Consensus       222 ~~ls~n~l~~~l~~~  236 (437)
                      +.+-.|-+++.-+.+
T Consensus       302 L~leGNPlrTiRr~i  316 (565)
T KOG0472|consen  302 LALEGNPLRTIRREI  316 (565)
T ss_pred             hhhcCCchHHHHHHH
Confidence            334555555444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.70  E-value=2.1e-17  Score=171.79  Aligned_cols=233  Identities=18%  Similarity=0.174  Sum_probs=159.6

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTA   81 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~   81 (437)
                      .|++++|.++.+|+.+.  .+|+.|++++|+|+.+|..   +++|++|++++|.++.+|..   .++|+.|++++|.++.
T Consensus       205 ~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~  276 (788)
T PRK15387        205 VLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTH  276 (788)
T ss_pred             EEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhh
Confidence            68899999999988775  3788888888888877753   46788888888888877753   2455556555555542


Q ss_pred             ccc--------------cccccccccCCccCcEEEeecCChHhH----hhccchHhcccccccCCchhhcCCCCCeEEee
Q 047084           82 GFA--------------AAKLHEGFGSLTNLQKLCIIEADSEAL----KELMKLRQLRNLLKTIPPPLAADRSTKKARFR  143 (437)
Q Consensus        82 ~~~--------------~~~lp~~~~~l~~L~~L~l~~n~~~~~----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~  143 (437)
                      ..+              +..+|.   .+++|+.|++++|++..+    ..|..|...+|.+..+|..   ..+|+.|+|+
T Consensus       277 Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS  350 (788)
T PRK15387        277 LPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVS  350 (788)
T ss_pred             hhhchhhcCEEECcCCccccccc---cccccceeECCCCccccCCCCcccccccccccCcccccccc---ccccceEecC
Confidence            110              002232   125678888888774443    2455555556777777742   2479999999


Q ss_pred             CCcCCCCCCCCc-hhhhhhcCCCCCCC-CchhccceeeecCCCCcccCCC--CCCCeEeechHHHhhhcccccceEEEEe
Q 047084          144 SHEVDADSPSPL-SFKDALVHPEQYRS-SEDAEMEEEWDLEPGDVTIGDD--GTMPTIKFSKRIQDKLIKPWQNSVVVKL  219 (437)
Q Consensus       144 ~N~l~~~~p~~~-~~~~~~l~~n~l~~-~~~~~~~~~L~L~~n~l~~~~~--~~lp~l~l~~n~l~~l~~~~~~~l~~~l  219 (437)
                      +|+|+ .+|... ++..+.++.|++.. ......++.|++++|+|+..+.  ..+..+.++.|.+..++..     ..++
T Consensus       351 ~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l-----~~~L  424 (788)
T PRK15387        351 DNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML-----PSGL  424 (788)
T ss_pred             CCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcc-----hhhh
Confidence            99999 466543 45566778888732 2223456789999999984432  3566788888888776532     2345


Q ss_pred             cCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE
Q 047084          220 LGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI  255 (437)
Q Consensus       220 ~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~  255 (437)
                      ..++++.|.++ .+|..+.....+..+++++|.|..
T Consensus       425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence            56788899987 467778888999999999999874

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.66  E-value=1.2e-18  Score=161.82  Aligned_cols=241  Identities=20%  Similarity=0.286  Sum_probs=193.5

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTA   81 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~   81 (437)
                      .|++++|.+..+.+.+.+|..|.+|++++|++.++|++++.+..++.|+.+.|.+..+|+.++.+.+|..|+.++|++. 
T Consensus        49 ~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-  127 (565)
T KOG0472|consen   49 KLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-  127 (565)
T ss_pred             hhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-
Confidence            4678999999998899999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             ccccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCCC
Q 047084           82 GFAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPSP  154 (437)
Q Consensus        82 ~~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~  154 (437)
                           ++|++++.+..|..|+..+|+    |+++.++..|..+   .|.+..+|+..-+++.|++||...|-++ ++|+.
T Consensus       128 -----el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~  201 (565)
T KOG0472|consen  128 -----ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPE  201 (565)
T ss_pred             -----ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChh
Confidence                 789999999999999999998    5555555555444   6788888877767999999999999998 88887


Q ss_pred             c----hhhhhhcCCCCC---CCCchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccccceEEEEecC
Q 047084          155 L----SFKDALVHPEQY---RSSEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQNSVVVKLLG  221 (437)
Q Consensus       155 ~----~~~~~~l~~n~l---~~~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~  221 (437)
                      +    ++.-+++..|++   +.+...+.+..|.++.|++.+.+.      ..+-.+.+.+|.+.+++..  .|+...+..
T Consensus       202 lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde--~clLrsL~r  279 (565)
T KOG0472|consen  202 LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE--ICLLRSLER  279 (565)
T ss_pred             hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH--HHHhhhhhh
Confidence            7    344567889988   555666677788999999985543      3444566677777766543  344555677


Q ss_pred             CCcCHHHHHHHHHhcccCCCceEEEEcCCcEE
Q 047084          222 RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYF  253 (437)
Q Consensus       222 ~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f  253 (437)
                      +++|.|.++. ++...+.+ .+..+.+.+|-+
T Consensus       280 LDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  280 LDLSNNDISS-LPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             hcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence            7888888765 44455555 667777777755

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.8e-17  Score=137.30  Aligned_cols=154  Identities=22%  Similarity=0.330  Sum_probs=128.5

Q ss_pred             cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCC
Q 047084           16 GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSL   95 (437)
Q Consensus        16 ~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l   95 (437)
                      .+.++.+.+.|-||+|++..+|+.+..+.+|+.|++.||.+..+|.++..|++|++|+++-|++.      .+|.+|+.+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~------~lprgfgs~  101 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN------ILPRGFGSF  101 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh------cCccccCCC
Confidence            56778999999999999999999999999999999999999999999999999999999999988      679999999


Q ss_pred             ccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCch----hhhhhcCCCCC-CC-
Q 047084           96 TNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLS----FKDALVHPEQY-RS-  169 (437)
Q Consensus        96 ~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~~----~~~~~l~~n~l-~~-  169 (437)
                      +.|+.|++..|+..              -..+|..|+.++.|+.|+|++|.+. .+|..+.    +.-+.+..|.+ .. 
T Consensus       102 p~levldltynnl~--------------e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lp  166 (264)
T KOG0617|consen  102 PALEVLDLTYNNLN--------------ENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLP  166 (264)
T ss_pred             chhhhhhccccccc--------------cccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCc
Confidence            99999999997532              2468889999999999999999999 7887663    33344555665 22 


Q ss_pred             --CchhccceeeecCCCCcccCC
Q 047084          170 --SEDAEMEEEWDLEPGDVTIGD  190 (437)
Q Consensus       170 --~~~~~~~~~L~L~~n~l~~~~  190 (437)
                        ......+..|.+.+|++++.+
T Consensus       167 keig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  167 KEIGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             HHHHHHHHHHHHhcccceeeecC
Confidence              122333466889999998554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.61  E-value=5.6e-17  Score=150.53  Aligned_cols=259  Identities=18%  Similarity=0.229  Sum_probs=173.7

Q ss_pred             EecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCccccc-chhhcCCcCCcEEecee-eccc
Q 047084            4 DLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQ-YNYT   80 (437)
Q Consensus         4 ~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~-n~l~   80 (437)
                      |-++-.++++|..+.  ..-..++|..|+|+.||+ +|+.+++|+.|||++|.|+.| |..|.+|++|..|-+.+ |+|+
T Consensus        52 dCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             EccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            344455777776553  245677888888888874 567788888888888888877 44588888888776666 8887


Q ss_pred             ccccccccccc-ccCCccCcEEEeecCC-----hHhHhhccchHh---cccccccCCc-hhhcCCCCCeEEeeCCcCC--
Q 047084           81 AGFAAAKLHEG-FGSLTNLQKLCIIEAD-----SEALKELMKLRQ---LRNLLKTIPP-PLAADRSTKKARFRSHEVD--  148 (437)
Q Consensus        81 ~~~~~~~lp~~-~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~---l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~--  148 (437)
                            .+|.. |++|.+|+.|.+..|.     ...|..|..|..   -+|.+..++. ++..+..++++.+..|.+-  
T Consensus       130 ------~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  130 ------DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             ------hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence                  56755 7888888888888776     233444444443   3778888886 6778888888888888832  


Q ss_pred             ----------CCCCCCc--------------------------hhhhh--hcCCCC-C----CC--CchhccceeeecCC
Q 047084          149 ----------ADSPSPL--------------------------SFKDA--LVHPEQ-Y----RS--SEDAEMEEEWDLEP  183 (437)
Q Consensus       149 ----------~~~p~~~--------------------------~~~~~--~l~~n~-l----~~--~~~~~~~~~L~L~~  183 (437)
                                ...|..+                          .+.++  .++.+. .    +.  +.....+++|+|++
T Consensus       204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn  283 (498)
T KOG4237|consen  204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN  283 (498)
T ss_pred             cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence                      1111111                          00000  011111 1    00  12233456688888


Q ss_pred             CCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE----EeCC
Q 047084          184 GDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI----RLKS  259 (437)
Q Consensus       184 n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~----~f~~  259 (437)
                      |+++...++.+..          +         ..+..+.+..|++...-..+|..+.+++.+++.+|.+..    .|..
T Consensus       284 N~i~~i~~~aFe~----------~---------a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~  344 (498)
T KOG4237|consen  284 NKITRIEDGAFEG----------A---------AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT  344 (498)
T ss_pred             Cccchhhhhhhcc----------h---------hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence            8887443322221          1         234445688899999999999999999999999999985    4666


Q ss_pred             hhhHHHh-HHcCceEEcCceEEEeecCCCCC
Q 047084          260 PEDAVYA-LTEGPWVIFGHYLTVQPWTPQFD  289 (437)
Q Consensus       260 ~~d~~~v-l~~~pw~~~~~~l~l~~w~~~~~  289 (437)
                      ...+..+ +-++||.++++...+.+|-..-.
T Consensus       345 ~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~  375 (498)
T KOG4237|consen  345 LFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS  375 (498)
T ss_pred             cceeeeeehccCcccCccchHHHHHHHhhCC
Confidence            5555554 78899999999999999976544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.57  E-value=1.7e-15  Score=158.44  Aligned_cols=213  Identities=19%  Similarity=0.215  Sum_probs=97.0

Q ss_pred             EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084            3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG   82 (437)
Q Consensus         3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~   82 (437)
                      |+|++|+++.+|..+.  .+|++|++++|++..+|..+.  .+|+.|++++|.+..+|..+.  .+|+.|++++|+++  
T Consensus       204 L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~--  275 (754)
T PRK15370        204 LILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS--  275 (754)
T ss_pred             EEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC--
Confidence            4444444444444332  244445555444444444332  244555555444445544432  24555555555554  


Q ss_pred             cccccccccccCCccCcEEEeecCChHhH-----hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc--
Q 047084           83 FAAAKLHEGFGSLTNLQKLCIIEADSEAL-----KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL--  155 (437)
Q Consensus        83 ~~~~~lp~~~~~l~~L~~L~l~~n~~~~~-----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~--  155 (437)
                          .+|..+.  .+|+.|++++|++..+     .+|..|...+|.+..+|..+.  ++|+.|++++|.++ .+|..+  
T Consensus       276 ----~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l~~  346 (754)
T PRK15370        276 ----CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALT-SLPASLPP  346 (754)
T ss_pred             ----ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCcccc--ccceeccccCCccc-cCChhhcC
Confidence                2343332  2455555555553222     133444444455555554332  35555555555555 244322  


Q ss_pred             hhhhhhcCCCCCCCC--chhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHH-
Q 047084          156 SFKDALVHPEQYRSS--EDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNR-  232 (437)
Q Consensus       156 ~~~~~~l~~n~l~~~--~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~-  232 (437)
                      ++..+.+++|++...  .....++.|++++|+|+                  .++....    ..+..+++++|.+... 
T Consensus       347 sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt------------------~LP~~l~----~sL~~LdLs~N~L~~LP  404 (754)
T PRK15370        347 ELQVLDVSKNQITVLPETLPPTITTLDVSRNALT------------------NLPENLP----AALQIMQASRNNLVRLP  404 (754)
T ss_pred             cccEEECCCCCCCcCChhhcCCcCEEECCCCcCC------------------CCCHhHH----HHHHHHhhccCCcccCc
Confidence            333444444444211  11123344555555543                  3322110    1222344555555432 


Q ss_pred             --HHhcccCCCceEEEEcCCcEEE
Q 047084          233 --LKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       233 --l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                        ++........+..+++++|.|.
T Consensus       405 ~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        405 ESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhHHHHhhcCCCccEEEeeCCCcc
Confidence              3333344566778888888876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.53  E-value=1.2e-14  Score=152.17  Aligned_cols=170  Identities=17%  Similarity=0.259  Sum_probs=122.6

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|+++.+|..+.  .+|+.|+|++|.+..+|..+.  .+|++|++++|.+..+|..+.  ++|+.|++++|+++
T Consensus       223 ~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        223 KTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc
Confidence            478888888888887654  368888888888888887664  478888888888888887654  47888888888887


Q ss_pred             cccccccccccccCCccCcEEEeecCChHhH-----hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL-----KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL  155 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~-----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~  155 (437)
                            .+|..+.  ++|+.|++++|....+     .+|+.|...+|.+..+|..+.  ++|+.|++++|+|+ .+|..+
T Consensus       297 ------~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l  365 (754)
T PRK15370        297 ------TLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL  365 (754)
T ss_pred             ------cCcccch--hhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh
Confidence                  3454442  4678888888874333     356666666777777887653  68888888888888 466533


Q ss_pred             --hhhhhhcCCCCCCCC--chhccceeeecCCCCcc
Q 047084          156 --SFKDALVHPEQYRSS--EDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       156 --~~~~~~l~~n~l~~~--~~~~~~~~L~L~~n~l~  187 (437)
                        ++..+.+++|++...  .....++.|++++|+|+
T Consensus       366 p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~  401 (754)
T PRK15370        366 PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLV  401 (754)
T ss_pred             cCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcc
Confidence              456677888887221  12234677888888886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=8.9e-15  Score=152.38  Aligned_cols=215  Identities=17%  Similarity=0.102  Sum_probs=117.0

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhc-----------------ccCCCEEEccCCcccccchhh
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGN-----------------LLGLETLDLKNTLVRELPVEI   63 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~-----------------l~~L~~L~l~~~~~~~lp~~~   63 (437)
                      +.|++++|+++.+|..   +++|++|++++|+|..+|....+                 ..+|+.|++++|.+..+|.  
T Consensus       225 ~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~--  299 (788)
T PRK15387        225 TTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--  299 (788)
T ss_pred             CEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc--
Confidence            3577888888777753   46778888888877766642211                 1234455555555555554  


Q ss_pred             cCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHhHh----hccchHhcccccccCCchhhcCCCCCe
Q 047084           64 RNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALK----ELMKLRQLRNLLKTIPPPLAADRSTKK  139 (437)
Q Consensus        64 ~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~----~L~~L~~l~n~~~~ip~~~~~l~~L~~  139 (437)
                       .+++|+.|++++|++++.      |...   .+|+.|++++|....++    +|..|...+|.+..+|..   ..+|+.
T Consensus       300 -~p~~L~~LdLS~N~L~~L------p~lp---~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~  366 (788)
T PRK15387        300 -LPPGLQELSVSDNQLASL------PALP---SELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL---PSELYK  366 (788)
T ss_pred             -cccccceeECCCCccccC------CCCc---ccccccccccCccccccccccccceEecCCCccCCCCCC---Ccccce
Confidence             236799999999998843      3311   23555666666544332    344444445666666642   235556


Q ss_pred             EEeeCCcCCCCCCCCc-hhhhhhcCCCCCCC-CchhccceeeecCCCCcccCCC--CCCCeEeechHHHhhhcccccceE
Q 047084          140 ARFRSHEVDADSPSPL-SFKDALVHPEQYRS-SEDAEMEEEWDLEPGDVTIGDD--GTMPTIKFSKRIQDKLIKPWQNSV  215 (437)
Q Consensus       140 L~l~~N~l~~~~p~~~-~~~~~~l~~n~l~~-~~~~~~~~~L~L~~n~l~~~~~--~~lp~l~l~~n~l~~l~~~~~~~l  215 (437)
                      |++++|+|+ .+|... ++..+.+++|++.. ......++.|++++|+|+..+.  ..+..+.++.|.+..++..+.  .
T Consensus       367 L~Ls~N~L~-~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~--~  443 (788)
T PRK15387        367 LWAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLI--H  443 (788)
T ss_pred             ehhhccccc-cCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcchhhhhhhhhccCcccccChHHh--h
Confidence            666666666 355433 34455566666521 1122334556677776653221  123334555555555543321  1


Q ss_pred             EEEecCCCcCHHHHHHHHHhc
Q 047084          216 VVKLLGRNIGYKVLCNRLKVM  236 (437)
Q Consensus       216 ~~~l~~~~ls~n~l~~~l~~~  236 (437)
                      ...+..+++++|.+++..+..
T Consensus       444 L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        444 LSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             ccCCCeEECCCCCCCchHHHH
Confidence            234444566666666554443

>PF14392 zf-CCHC_4: Zinc knuckle

Probab=99.47  E-value=2.8e-14  Score=95.50  Aligned_cols=44  Identities=39%  Similarity=0.887  Sum_probs=40.2

Q ss_pred             eeCCCCceeEEEEe---Ce--EEEEEEccCcccccccccccccCCCCCC
Q 047084          349 ISLSQPLLSRFNID---GK--IQKVEYEGLPIICYQCGKYGHNSIVCQS  392 (437)
Q Consensus       349 id~~kpl~~~i~~~---g~--~~~v~YE~lp~~C~~cg~~gH~~~~C~~  392 (437)
                      ||+++||..++.+.   |.  +++|+|||+|.||++||.+||..++|++
T Consensus         1 id~~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~~C~k   49 (49)
T PF14392_consen    1 IDVSKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDKECPK   49 (49)
T ss_pred             CCCCCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHhHcCC
Confidence            69999999999995   33  7899999999999999999999999985

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.46  E-value=5.9e-15  Score=137.25  Aligned_cols=191  Identities=15%  Similarity=0.230  Sum_probs=133.0

Q ss_pred             EEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEcc-CCcccccchh-hcCCcCCcEEeceee
Q 047084            2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLK-NTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~-~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      .++|..|+|+.||+ .|..+.+|+.||||+|.|+.| |.+|.++.+|.+|-+. +|.|+.+|.+ |++|.+|+.|.+.-|
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan  150 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN  150 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence            57899999999987 689999999999999999855 6889999999988776 6999999976 777777777777776


Q ss_pred             ccccccccccccccccCCccCcEEEeecCChHhH------------------------hhccc-----------------
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL------------------------KELMK-----------------  116 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~------------------------~~L~~-----------------  116 (437)
                      ++....     ...|..|++|..|.+.+|....+                        -+|+.                 
T Consensus       151 ~i~Cir-----~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  151 HINCIR-----QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hhcchh-----HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            665321     23344555555554444431111                        00100                 


Q ss_pred             ----------------------hHhc-------ccccccCC-chhhcCCCCCeEEeeCCcCCCCCCCCc----hhhhhhc
Q 047084          117 ----------------------LRQL-------RNLLKTIP-PPLAADRSTKKARFRSHEVDADSPSPL----SFKDALV  162 (437)
Q Consensus       117 ----------------------L~~l-------~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~~~p~~~----~~~~~~l  162 (437)
                                            ++.+       .+....-| ..|..+++|++|+|++|+|++.-+..|    ++.++.+
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence                                  0001       11123333 347889999999999999996555555    6889999


Q ss_pred             CCCCCCC-----CchhccceeeecCCCCcccCCCCCCCeE
Q 047084          163 HPEQYRS-----SEDAEMEEEWDLEPGDVTIGDDGTMPTI  197 (437)
Q Consensus       163 ~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~~~lp~l  197 (437)
                      +.|++..     +.....+..|+|.+|++|...++.+.+.
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~  345 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL  345 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence            9999933     3445567889999999996655555443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.46  E-value=1.4e-14  Score=147.57  Aligned_cols=245  Identities=18%  Similarity=0.207  Sum_probs=146.4

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      +.||+++|.+..+|..+..+.+|+.|+++.|.|..+|.++.++.+|++|.|.+|.+..+|.++..+++|++|+++.|++.
T Consensus        48 ~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~  127 (1081)
T KOG0618|consen   48 KSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG  127 (1081)
T ss_pred             EEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC
Confidence            35777777777777777777777777777777777777777777777777777777777777777777777777777776


Q ss_pred             cccccccccccccCCccCcEEEeecCC-hHhHhhcc--chHhc-ccccccCCchhhcCCCCCeEEeeCCcCCCCC-CCCc
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEAD-SEALKELM--KLRQL-RNLLKTIPPPLAADRSTKKARFRSHEVDADS-PSPL  155 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~-~~~~~~L~--~L~~l-~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~-p~~~  155 (437)
                            .+|..+..++.+..+..++|. ...++.+.  .+..- +.+.+.++..+..++.  .|+|.+|++.... ...-
T Consensus       128 ------~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~  199 (1081)
T KOG0618|consen  128 ------PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLA  199 (1081)
T ss_pred             ------CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhcc
Confidence                  456667777777777777772 22222222  22211 2233555555555554  5888888877211 1222


Q ss_pred             hhhhhhcCCCCCCC-CchhccceeeecCCCCcccCCC----CCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHH
Q 047084          156 SFKDALVHPEQYRS-SEDAEMEEEWDLEPGDVTIGDD----GTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLC  230 (437)
Q Consensus       156 ~~~~~~l~~n~l~~-~~~~~~~~~L~L~~n~l~~~~~----~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~  230 (437)
                      .+..+....|++.. .-.+..+..|+.++|.++....    ..+..+.++.+.+..++ .|... ..++...+.++|.+.
T Consensus       200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~-~~nle~l~~n~N~l~  277 (1081)
T KOG0618|consen  200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGA-CANLEALNANHNRLV  277 (1081)
T ss_pred             chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHh-cccceEecccchhHH
Confidence            33444555566522 2223344555666666652222    33444556666666665 44322 224444455555554


Q ss_pred             HHHHhc----------------------ccCCCceEEEEcCCcEEEE
Q 047084          231 NRLKVM----------------------WHQIHDFSVIDLENNYFLI  255 (437)
Q Consensus       231 ~~l~~~----------------------w~~~~~l~~l~l~~N~f~~  255 (437)
                      ....++                      -...+.++.+++..|.+..
T Consensus       278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~  324 (1081)
T KOG0618|consen  278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS  324 (1081)
T ss_pred             hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc
Confidence            433222                      2346678888998887653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.45  E-value=5.9e-15  Score=150.25  Aligned_cols=179  Identities=18%  Similarity=0.246  Sum_probs=100.5

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTA   81 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~   81 (437)
                      ++|+++|++..+|+.++.+.+|+.|++.+|++..+|..+..+++|+.|.+..|.+..+|+...++++|++|+|..|++. 
T Consensus       245 ~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-  323 (1081)
T KOG0618|consen  245 YLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-  323 (1081)
T ss_pred             eeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-
Confidence            5666677776676666667777777777777766666666667777776666667777766666677777777777665 


Q ss_pred             ccccccccccc-cCCc-cCcEEEeecCChHh--------HhhccchHhccccccc-CCchhhcCCCCCeEEeeCCcCCCC
Q 047084           82 GFAAAKLHEGF-GSLT-NLQKLCIIEADSEA--------LKELMKLRQLRNLLKT-IPPPLAADRSTKKARFRSHEVDAD  150 (437)
Q Consensus        82 ~~~~~~lp~~~-~~l~-~L~~L~l~~n~~~~--------~~~L~~L~~l~n~~~~-ip~~~~~l~~L~~L~l~~N~l~~~  150 (437)
                           .+|+.+ .-+. +|+.|..+.|..+.        .+.|..|..-+|.++. .=+.+-+..+|+.|+|++|+|. .
T Consensus       324 -----~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~  397 (1081)
T KOG0618|consen  324 -----SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S  397 (1081)
T ss_pred             -----ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c
Confidence                 344432 2222 24444444443111        1223333333444422 2234555666777777777776 5


Q ss_pred             CCCCc-----hhhhhhcCCCCCCCC----chhccceeeecCCCCcc
Q 047084          151 SPSPL-----SFKDALVHPEQYRSS----EDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       151 ~p~~~-----~~~~~~l~~n~l~~~----~~~~~~~~L~L~~n~l~  187 (437)
                      +|...     .+.++.+++|++...    .....+++|..-+|++.
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee
Confidence            66543     455666666666221    11223345555556553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=5.8e-14  Score=136.23  Aligned_cols=144  Identities=28%  Similarity=0.406  Sum_probs=78.6

Q ss_pred             EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084            3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG   82 (437)
Q Consensus         3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~   82 (437)
                      .||+.|++.++|..++.+..|+.|.|..|.+..+|..++++..|++|+|+.|.+..+|..+..|+ |+.|-+++|+++  
T Consensus        80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~--  156 (722)
T KOG0532|consen   80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT--  156 (722)
T ss_pred             hhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc--
Confidence            45666666666666555555666666666665566666666666666666555566665555554 555556666555  


Q ss_pred             cccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc
Q 047084           83 FAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL  155 (437)
Q Consensus        83 ~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~  155 (437)
                          .+|+.++.+..|..|+.+.|+    +..+..|..|+.+   +|....+|+.+..|+ |.+||+|+|+++ .+|-.|
T Consensus       157 ----~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-~iPv~f  230 (722)
T KOG0532|consen  157 ----SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLPVDF  230 (722)
T ss_pred             ----cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-ecchhh
Confidence                445555555555556555555    2222233333332   344455555555333 555555555555 455444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=2e-13  Score=132.54  Aligned_cols=145  Identities=24%  Similarity=0.343  Sum_probs=128.8

Q ss_pred             EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084            3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG   82 (437)
Q Consensus         3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~   82 (437)
                      |.|+.|.+..+|..+.+|..|++|||+.|++..+|..++.|+ |+.|.++||.++.+|++++.+..|.+|+.+.|++.  
T Consensus       103 liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~--  179 (722)
T KOG0532|consen  103 LILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ--  179 (722)
T ss_pred             HHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh--
Confidence            457889999999999999999999999999999999999887 99999999999999999999999999999999998  


Q ss_pred             cccccccccccCCccCcEEEeecCChHh----Hh--hccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc
Q 047084           83 FAAAKLHEGFGSLTNLQKLCIIEADSEA----LK--ELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL  155 (437)
Q Consensus        83 ~~~~~lp~~~~~l~~L~~L~l~~n~~~~----~~--~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~  155 (437)
                          .+|..++++.+|+.|.+..|....    +.  .|..|+...|.+..||..|.+|..|++|-|.+|.|. .-|..+
T Consensus       180 ----slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  180 ----SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             ----hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence                779999999999999999998433    32  234555558999999999999999999999999999 445554

>PLN03210 Resistant to P

Probab=99.27  E-value=6.2e-12  Score=139.98  Aligned_cols=75  Identities=29%  Similarity=0.441  Sum_probs=37.9

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeeccc-CcccChhhhcccCCCEEEcc-CCcccccchhhcCCcCCcEEeceee
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTK-VKIIPKSIGNLLGLETLDLK-NTLVRELPVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~l~-~~~~~~lp~~~~~L~~L~~L~l~~n   77 (437)
                      .|++++|.+..+|..+..+++|++|+|+++. ++.+| .+..+++|++|+++ ++.+..+|..+++|++|+.|++++|
T Consensus       615 ~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        615 KLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             EEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence            3445555555555545555555555555443 34443 24445555555555 3344555555555555555555543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.19  E-value=3.8e-11  Score=133.81  Aligned_cols=147  Identities=18%  Similarity=0.216  Sum_probs=76.2

Q ss_pred             CCccccCC-CCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccccccccccccc
Q 047084           13 LPEGVGNL-FNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG   91 (437)
Q Consensus        13 lp~~~~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~   91 (437)
                      +|..+..+ .+|+.|.+.++.+..+|..+ .+.+|++|++.++.+..+|.++..+++|+.|+|+++...+     .+| .
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-----~ip-~  652 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-----EIP-D  652 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-----cCC-c
Confidence            45555444 34666666666666666554 3556666666666666666666666666666666543221     233 2


Q ss_pred             ccCCccCcEEEeecCC-----hHhHhhccchHhc----ccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc-hhhhhh
Q 047084           92 FGSLTNLQKLCIIEAD-----SEALKELMKLRQL----RNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL-SFKDAL  161 (437)
Q Consensus        92 ~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l----~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~  161 (437)
                      +..+++|++|++++|.     +..+..|.+|+.+    .+.+..+|..+ ++++|+.|++++|...+.+|... ++..+.
T Consensus       653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~  731 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLD  731 (1153)
T ss_pred             cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeee
Confidence            5556666666666553     3333344444333    12345555443 45566666666655444444322 233334


Q ss_pred             cCCCCC
Q 047084          162 VHPEQY  167 (437)
Q Consensus       162 l~~n~l  167 (437)
                      ++.|.+
T Consensus       732 L~~n~i  737 (1153)
T PLN03210        732 LDETAI  737 (1153)
T ss_pred             cCCCcc
Confidence            444443

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.16  E-value=2.2e-11  Score=104.97  Aligned_cols=101  Identities=24%  Similarity=0.357  Sum_probs=32.5

Q ss_pred             CEEEecCCCCCcCCcccc-CCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhh-cCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVG-NLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEI-RNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~-~~L~~L~~L~l~~n~   78 (437)
                      |.|+|++|.|+.+. .++ .+.+|+.|+|++|.|..++ .+..+++|++|++++|.++.+++.+ ..+++|++|++++|+
T Consensus        22 ~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~   99 (175)
T PF14580_consen   22 RELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK   99 (175)
T ss_dssp             ---------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred             cccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc
Confidence            45677777776663 443 4667777777777776663 4666777777777777777776554 356777777777777


Q ss_pred             cccccccccccccccCCccCcEEEeecCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~  107 (437)
                      |....   ++ ..+..+++|+.|++.+|+
T Consensus       100 I~~l~---~l-~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen  100 ISDLN---EL-EPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             --SCC---CC-GGGGG-TT--EEE-TT-G
T ss_pred             CCChH---Hh-HHHHcCCCcceeeccCCc
Confidence            76432   22 335566677777776665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=2.5e-11  Score=120.43  Aligned_cols=165  Identities=22%  Similarity=0.273  Sum_probs=73.5

Q ss_pred             ccCCCCCcEEEeecccCcccChhhhccc-CCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCC
Q 047084           17 VGNLFNLHYLSVKNTKVKIIPKSIGNLL-GLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSL   95 (437)
Q Consensus        17 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l   95 (437)
                      +..+..++.|++.+|.+..+|+....+. +|+.|+++.|.+..+|..++.+++|+.|++++|+++      ++|...+.+
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~------~l~~~~~~~  185 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS------DLPKLLSNL  185 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh------hhhhhhhhh
Confidence            3334445555555555554544444442 455555555555555444455555555555555544      334333344


Q ss_pred             ccCcEEEeecCChHhHh-------hccchHhcccccccCCchhhcCCCCCeEEeeCCcCCC--C-CCCCchhhhhhcCCC
Q 047084           96 TNLQKLCIIEADSEALK-------ELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDA--D-SPSPLSFKDALVHPE  165 (437)
Q Consensus        96 ~~L~~L~l~~n~~~~~~-------~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~--~-~p~~~~~~~~~l~~n  165 (437)
                      +.|+.|++++|+...++       .|..|...+|....++..+..+.++..+.+++|++..  . +....++..+.++.|
T Consensus       186 ~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         186 SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             hhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence            45555555555422221       1222322334333444444445555555555555441  0 111112333444444


Q ss_pred             CC---CCCchhccceeeecCCCCcc
Q 047084          166 QY---RSSEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       166 ~l---~~~~~~~~~~~L~L~~n~l~  187 (437)
                      ++   ........++.|++++|.++
T Consensus       266 ~i~~i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         266 QISSISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccccccccccCccCEEeccCcccc
Confidence            44   11122334466777777775

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=3.1e-11  Score=104.07  Aligned_cols=122  Identities=25%  Similarity=0.384  Sum_probs=42.2

Q ss_pred             EecCCCCCcCCccccCCCCCcEEEeecccCcccChhhh-cccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084            4 DLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIG-NLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG   82 (437)
Q Consensus         4 ~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~   82 (437)
                      .|..+.|.++| .+.+...++.|+|++|.|..+. .++ .+.+|+.|++++|.++.++ ++..|++|++|++++|+++  
T Consensus         3 ~lt~~~i~~~~-~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~--   77 (175)
T PF14580_consen    3 RLTANMIEQIA-QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS--   77 (175)
T ss_dssp             -----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS-----
T ss_pred             ccccccccccc-cccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC--
Confidence            45556666665 3455668899999999998773 566 5899999999999999986 5888999999999999998  


Q ss_pred             cccccccccc-cCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           83 FAAAKLHEGF-GSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        83 ~~~~~lp~~~-~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                          .+.+.+ ..+++|+.|++++|+...+..+.              .+..+++|+.|+|.+|+++
T Consensus        78 ----~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~--------------~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   78 ----SISEGLDKNLPNLQELYLSNNKISDLNELE--------------PLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             ----S-CHHHHHH-TT--EEE-TTS---SCCCCG--------------GGGG-TT--EEE-TT-GGG
T ss_pred             ----ccccchHHhCCcCCEEECcCCcCCChHHhH--------------HHHcCCCcceeeccCCccc
Confidence                444445 46899999999998765543322              3456788899999999987

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.05  E-value=2.4e-11  Score=116.78  Aligned_cols=234  Identities=17%  Similarity=0.155  Sum_probs=130.3

Q ss_pred             EEEecCCCC--CcCCccccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCcccc-------cchhhcCCc
Q 047084            2 VLDLEDAPV--DYLPEGVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVRE-------LPVEIRNLK   67 (437)
Q Consensus         2 ~L~L~~n~l--~~lp~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-------lp~~~~~L~   67 (437)
                      .|+|..+.+  ...+..+..+.+|+.|+++++.++     .++..+...+.|++|+++.+.++.       ++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            477777776  344555667777888888888873     355566677778888888655552       334567788


Q ss_pred             CCcEEeceeeccccccccccccccccCCc---cCcEEEeecCChH---------hHhhc-cchHhc---ccccc-----c
Q 047084           68 RLRYLMVYQYNYTAGFAAAKLHEGFGSLT---NLQKLCIIEADSE---------ALKEL-MKLRQL---RNLLK-----T  126 (437)
Q Consensus        68 ~L~~L~l~~n~l~~~~~~~~lp~~~~~l~---~L~~L~l~~n~~~---------~~~~L-~~L~~l---~n~~~-----~  126 (437)
                      +|+.|++++|.+.+..     +..+..+.   +|++|++++|...         .+..+ ..|+.+   ++.+.     .
T Consensus        82 ~L~~L~l~~~~~~~~~-----~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          82 GLQELDLSDNALGPDG-----CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             ceeEEEccCCCCChhH-----HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            8888888888886422     33344343   4888888888632         22222 333333   34333     2


Q ss_pred             CCchhhcCCCCCeEEeeCCcCCCC----CCC----CchhhhhhcCCCCCCCC---------chhccceeeecCCCCcccC
Q 047084          127 IPPPLAADRSTKKARFRSHEVDAD----SPS----PLSFKDALVHPEQYRSS---------EDAEMEEEWDLEPGDVTIG  189 (437)
Q Consensus       127 ip~~~~~l~~L~~L~l~~N~l~~~----~p~----~~~~~~~~l~~n~l~~~---------~~~~~~~~L~L~~n~l~~~  189 (437)
                      ++..+..+.+|++|++++|.+++.    ++.    ...+..+.++.|.+...         .....++.|++++|+++. 
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-  235 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-  235 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch-
Confidence            334556667788888888888742    111    11344555555655211         111234667777776641 


Q ss_pred             CCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHH----HHHHhcccCCCceEEEEcCCcEEE
Q 047084          190 DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLC----NRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       190 ~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~----~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                                  .....+...... ....+..+.+++|.++    ..+.........++.++++.|.+.
T Consensus       236 ------------~~~~~l~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         236 ------------AGAAALASALLS-PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             ------------HHHHHHHHHHhc-cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence                        001111100000 0012223334444432    233344445578888999988876

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=4.3e-11  Score=108.13  Aligned_cols=123  Identities=18%  Similarity=0.179  Sum_probs=73.0

Q ss_pred             CCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCc
Q 047084           20 LFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQ   99 (437)
Q Consensus        20 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~   99 (437)
                      ...|+.||||+|.|+.+..++.-++.++.|+++.|.+..+.. +..|++|+.||||+|.++      ++...-..+.+++
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls------~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA------ECVGWHLKLGNIK  355 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH------hhhhhHhhhcCEe
Confidence            345666666666666655555556666666666666555544 556666666666666655      2222223455556


Q ss_pred             EEEeecCChHhHhhccchHhc------ccccccCC--chhhcCCCCCeEEeeCCcCCC
Q 047084          100 KLCIIEADSEALKELMKLRQL------RNLLKTIP--PPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus       100 ~L~l~~n~~~~~~~L~~L~~l------~n~~~~ip--~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      +|.|+.|..+.++.|..|-.+      .|.+..+.  ..+++++.|+.+.|.+|++++
T Consensus       356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            666666655555544444333      23333332  357888999999999999984

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.03  E-value=2.5e-10  Score=109.72  Aligned_cols=236  Identities=17%  Similarity=0.149  Sum_probs=119.8

Q ss_pred             EEEecCCCC-----CcCCccccCCCCCcEEEeecccCcc-------cChhhhcccCCCEEEccCCccc-ccchhhcCCcC
Q 047084            2 VLDLEDAPV-----DYLPEGVGNLFNLHYLSVKNTKVKI-------IPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKR   68 (437)
Q Consensus         2 ~L~L~~n~l-----~~lp~~~~~l~~L~~L~L~~n~l~~-------lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~   68 (437)
                      +|+++++.+     ..+++.+...+.|+.|+++++.++.       ++..+..+++|+.|+++++.+. ..+..+..+.+
T Consensus        27 ~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  106 (319)
T cd00116          27 VLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR  106 (319)
T ss_pred             EEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhc
Confidence            566666665     2234445556667777777666542       2234555667777777755443 33444444444


Q ss_pred             ---CcEEeceeeccccccccccccccccCC-ccCcEEEeecCChH---------hHhhccchHhc---ccccc-----cC
Q 047084           69 ---LRYLMVYQYNYTAGFAAAKLHEGFGSL-TNLQKLCIIEADSE---------ALKELMKLRQL---RNLLK-----TI  127 (437)
Q Consensus        69 ---L~~L~l~~n~l~~~~~~~~lp~~~~~l-~~L~~L~l~~n~~~---------~~~~L~~L~~l---~n~~~-----~i  127 (437)
                         |++|++++|++++.. ...+...+..+ ++|+.|++++|...         .+..+..|+.+   .+.++     .+
T Consensus       107 ~~~L~~L~ls~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  185 (319)
T cd00116         107 SSSLQELKLNNNGLGDRG-LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL  185 (319)
T ss_pred             cCcccEEEeeCCccchHH-HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence               777777777665311 11223344455 66777777766522         22222233333   23222     23


Q ss_pred             CchhhcCCCCCeEEeeCCcCCCC--------CCCCchhhhhhcCCCCCCC------Cch----hccceeeecCCCCcccC
Q 047084          128 PPPLAADRSTKKARFRSHEVDAD--------SPSPLSFKDALVHPEQYRS------SED----AEMEEEWDLEPGDVTIG  189 (437)
Q Consensus       128 p~~~~~l~~L~~L~l~~N~l~~~--------~p~~~~~~~~~l~~n~l~~------~~~----~~~~~~L~L~~n~l~~~  189 (437)
                      +..+...++|+.|++++|.+++.        ++...++..+.+++|.+.-      ...    ...++.|++++|.++. 
T Consensus       186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~-  264 (319)
T cd00116         186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD-  264 (319)
T ss_pred             HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc-
Confidence            33445556777777777776522        1112235556666666521      001    1345778888888750 


Q ss_pred             CCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHH----HHhcccCC-CceEEEEcCCcEE
Q 047084          190 DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNR----LKVMWHQI-HDFSVIDLENNYF  253 (437)
Q Consensus       190 ~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~----l~~~w~~~-~~l~~l~l~~N~f  253 (437)
                               .....+.+..+..     .++...+++.|.+...    ...++... ..+..+++++|.|
T Consensus       265 ---------~~~~~l~~~~~~~-----~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         265 ---------DGAKDLAEVLAEK-----ESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             ---------HHHHHHHHHHhcC-----CCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence                     0111111111111     2233345555555533    55566555 6777888877643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=1.3e-10  Score=115.31  Aligned_cols=160  Identities=22%  Similarity=0.337  Sum_probs=132.2

Q ss_pred             CEEEecCCCCCcCCccccCCC-CCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLF-NLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l   79 (437)
                      +.|++.+|.+.++|+....+. +|+.|++++|++..+|..+.+++.|+.|++++|.+..+|...+.+++|+.|++++|++
T Consensus       119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i  198 (394)
T COG4886         119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI  198 (394)
T ss_pred             eEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcc
Confidence            368899999999998888885 9999999999999998889999999999999999999999888999999999999999


Q ss_pred             ccccccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSP  152 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p  152 (437)
                      +      .+|.....+.+|++|.+++|.    +..+..+..+..+   +|.+..++..++.++++++|++++|+++ .++
T Consensus       199 ~------~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~  271 (394)
T COG4886         199 S------DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SIS  271 (394)
T ss_pred             c------cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-ccc
Confidence            8      678777778889999999994    3334444444443   5667777888899999999999999998 444


Q ss_pred             C---CchhhhhhcCCCCC
Q 047084          153 S---PLSFKDALVHPEQY  167 (437)
Q Consensus       153 ~---~~~~~~~~l~~n~l  167 (437)
                      .   ...+..+.+++|.+
T Consensus       272 ~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         272 SLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cccccCccCEEeccCccc
Confidence            3   33566667777765

>PLN03150 hypothetical protein; Provisional

Probab=98.94  E-value=1.7e-09  Score=112.89  Aligned_cols=111  Identities=19%  Similarity=0.296  Sum_probs=80.3

Q ss_pred             CCcEEEeecccC-cccChhhhcccCCCEEEccCCcc-cccchhhcCCcCCcEEeceeeccccccccccccccccCCccCc
Q 047084           22 NLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTLV-RELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQ   99 (437)
Q Consensus        22 ~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~l~~~~~-~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~   99 (437)
                      .++.|+|++|.+ +.+|..++.+++|+.|+|++|.+ +.+|..++.|++|+.|+|++|+++|..     |+.++++++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-----P~~l~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-----PESLGQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-----chHHhcCCCCC
Confidence            377888888888 47888888888888888885555 578888888888888888888888754     78888888888


Q ss_pred             EEEeecCChHhHhhccchHhcccccccCCchhhc-CCCCCeEEeeCCcCCCCCC
Q 047084          100 KLCIIEADSEALKELMKLRQLRNLLKTIPPPLAA-DRSTKKARFRSHEVDADSP  152 (437)
Q Consensus       100 ~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~-l~~L~~L~l~~N~l~~~~p  152 (437)
                      .|+|++|++....               |..+.. ..++..+++++|......|
T Consensus       494 ~L~Ls~N~l~g~i---------------P~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        494 ILNLNGNSLSGRV---------------PAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             EEECcCCcccccC---------------ChHHhhccccCceEEecCCccccCCC
Confidence            8888888632110               111111 2345677888887664333

>PLN03150 hypothetical protein; Provisional

Probab=98.84  E-value=8e-09  Score=107.83  Aligned_cols=92  Identities=20%  Similarity=0.292  Sum_probs=80.4

Q ss_pred             CCCEEEccCCcc-cccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccc
Q 047084           45 GLETLDLKNTLV-RELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNL  123 (437)
Q Consensus        45 ~L~~L~l~~~~~-~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~  123 (437)
                      .++.|+|++|.+ +.+|..+++|++|+.|+|++|.++|..     |..++.+++|+.|+|++|+               +
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i-----P~~~~~l~~L~~LdLs~N~---------------l  478 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-----PPSLGSITSLEVLDLSYNS---------------F  478 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC-----ChHHhCCCCCCEEECCCCC---------------C
Confidence            478899995554 588999999999999999999999754     8889999999999999974               3


Q ss_pred             cccCCchhhcCCCCCeEEeeCCcCCCCCCCCch
Q 047084          124 LKTIPPPLAADRSTKKARFRSHEVDADSPSPLS  156 (437)
Q Consensus       124 ~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~~  156 (437)
                      .+.+|..++++++|+.|+|++|+++|.+|..+.
T Consensus       479 sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~  511 (623)
T PLN03150        479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG  511 (623)
T ss_pred             CCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence            457899999999999999999999999998664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=4.4e-09  Score=74.58  Aligned_cols=58  Identities=43%  Similarity=0.610  Sum_probs=38.2

Q ss_pred             CCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecc
Q 047084           22 NLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNY   79 (437)
Q Consensus        22 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l   79 (437)
                      +|++|++++|+|..+|+ .|.++++|++|++++|.+..+|++ |.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            56677777777766663 455677777777776666666553 66777777777766653

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=6.7e-09  Score=94.11  Aligned_cols=102  Identities=20%  Similarity=0.254  Sum_probs=81.6

Q ss_pred             hhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHhH-------
Q 047084           39 SIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL-------  111 (437)
Q Consensus        39 ~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~-------  111 (437)
                      .+..+..|++|||+.|.|+.+.++..-+|+++.|++|+|.+.      .+ ..+..+.+|+.||||+|....+       
T Consensus       279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~------~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL  351 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR------TV-QNLAELPQLQLLDLSGNLLAECVGWHLKL  351 (490)
T ss_pred             ecchHhhhhhccccccchhhhhhhhhhccceeEEecccccee------ee-hhhhhcccceEeecccchhHhhhhhHhhh
Confidence            344567899999999999999999999999999999999998      22 3488899999999999975443       


Q ss_pred             hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084          112 KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus       112 ~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      .+++.|....|.+..+. ++..+-+|..||+++|+|.
T Consensus       352 GNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  352 GNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             cCEeeeehhhhhHhhhh-hhHhhhhheeccccccchh
Confidence            45555555567766663 5677778888888888887

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.63  E-value=3.6e-08  Score=105.55  Aligned_cols=100  Identities=26%  Similarity=0.314  Sum_probs=75.7

Q ss_pred             EEEecCCC--CCcCCcc-ccCCCCCcEEEeeccc-CcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceee
Q 047084            2 VLDLEDAP--VDYLPEG-VGNLFNLHYLSVKNTK-VKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         2 ~L~L~~n~--l~~lp~~-~~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n   77 (437)
                      +|-+.+|.  +..++.. |..++.|++|||++|. ++++|..+++|.+|++|+++.+.+..+|.++++|++|.+|++..+
T Consensus       549 tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~  628 (889)
T KOG4658|consen  549 TLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT  628 (889)
T ss_pred             eEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccc
Confidence            45566665  6666654 5668888888888775 578888888888888888888888888888888888888888877


Q ss_pred             ccccccccccccccccCCccCcEEEeecC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEA  106 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n  106 (437)
                      .....     +|.....|++|++|.+..-
T Consensus       629 ~~l~~-----~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  629 GRLES-----IPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccc-----ccchhhhcccccEEEeecc
Confidence            65422     2455566888888887654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.62  E-value=2.6e-08  Score=70.61  Aligned_cols=59  Identities=32%  Similarity=0.425  Sum_probs=51.2

Q ss_pred             cCCCEEEccCCcccccchh-hcCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCC
Q 047084           44 LGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        44 ~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~  107 (437)
                      ++|++|++++|.+..+|++ |.++++|++|++++|.++...     |..|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-----~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-----PDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-----TTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-----HHHHcCCCCCCEEeCcCCc
Confidence            4789999999999999975 899999999999999998432     4568999999999999885

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.51  E-value=2e-08  Score=100.16  Aligned_cols=176  Identities=18%  Similarity=0.226  Sum_probs=119.4

Q ss_pred             EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084            3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG   82 (437)
Q Consensus         3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~   82 (437)
                      ++++.|.++.+-..+..+.+|+.|++.+|+|..+...+..+.+|++|++++|.|+.+.. +..++.|+.|++++|.++..
T Consensus        77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~  155 (414)
T KOG0531|consen   77 LNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDI  155 (414)
T ss_pred             hccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhc
Confidence            45667777765455788889999999999988776557889999999999998888764 66777799999999998832


Q ss_pred             cccccccccccCCccCcEEEeecCChHhHhh-----ccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCC--
Q 047084           83 FAAAKLHEGFGSLTNLQKLCIIEADSEALKE-----LMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSP--  152 (437)
Q Consensus        83 ~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~-----L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p--  152 (437)
                             ..+..+..|+.+++++|....+..     +..+..+   +|.+..+. .+..+..+..+++..|.++-.-+  
T Consensus       156 -------~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~l~  227 (414)
T KOG0531|consen  156 -------SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEGLN  227 (414)
T ss_pred             -------cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccCcc
Confidence                   346668889999999987433333     3333333   45554443 34444555566888888873222  


Q ss_pred             CCch--hhhhhcCCCCCCCC----chhccceeeecCCCCcc
Q 047084          153 SPLS--FKDALVHPEQYRSS----EDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       153 ~~~~--~~~~~l~~n~l~~~----~~~~~~~~L~L~~n~l~  187 (437)
                      ....  +.++.+.+|.+...    ........|++.+|++.
T Consensus       228 ~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  228 ELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             cchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence            1222  67788888887332    22333456788888875

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.51  E-value=7.2e-09  Score=83.39  Aligned_cols=60  Identities=23%  Similarity=0.345  Sum_probs=26.8

Q ss_pred             CCCcEEEeecccCcccChhhhc-ccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084           21 FNLHYLSVKNTKVKIIPKSIGN-LLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus        21 ~~L~~L~L~~n~l~~lp~~~~~-l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      .+|+..+|++|.+..+|+.|.. ++-+++|++++|.+..+|.++..|+.|+.|+++.|.+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc
Confidence            3344444444444444444332 23444444444444444444444444444444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.47  E-value=5.1e-08  Score=97.21  Aligned_cols=181  Identities=18%  Similarity=0.179  Sum_probs=115.9

Q ss_pred             CCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccC
Q 047084           19 NLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNL   98 (437)
Q Consensus        19 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L   98 (437)
                      .+..++.+.++.|.|..+-..+..+++|+.|++.+|.+..+...+..+++|++|++++|.|+...       .+..++.|
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-------~l~~l~~L  142 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-------GLSTLTLL  142 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-------chhhccch
Confidence            46677777788888876545577888888888888888888776778888888888888888432       45666678


Q ss_pred             cEEEeecCChHhHhhcc---chHhc---ccccccCCch-hhcCCCCCeEEeeCCcCCCCCCCCc---hhhhhhcCCCCCC
Q 047084           99 QKLCIIEADSEALKELM---KLRQL---RNLLKTIPPP-LAADRSTKKARFRSHEVDADSPSPL---SFKDALVHPEQYR  168 (437)
Q Consensus        99 ~~L~l~~n~~~~~~~L~---~L~~l---~n~~~~ip~~-~~~l~~L~~L~l~~N~l~~~~p~~~---~~~~~~l~~n~l~  168 (437)
                      +.|++++|....+.++.   .|+.+   .|.+..+... +..+.+++.+.+..|.+. .+...-   .+..+.+..|.+.
T Consensus       143 ~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  143 KELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EIEGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             hhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cccchHHHHHHHHhhcccccce
Confidence            88888888855554433   33322   5556666543 467788888888888887 322211   2223345666662


Q ss_pred             CCch---hcc--ceeeecCCCCcccC-----CCCCCCeEeechHHHhhh
Q 047084          169 SSED---AEM--EEEWDLEPGDVTIG-----DDGTMPTIKFSKRIQDKL  207 (437)
Q Consensus       169 ~~~~---~~~--~~~L~L~~n~l~~~-----~~~~lp~l~l~~n~l~~l  207 (437)
                      ....   ...  +..+.+++|++.-.     ....++.+.+.++.+...
T Consensus       222 ~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  222 KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             eccCcccchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence            2221   122  46678888887643     123444455555544433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.40  E-value=2.1e-07  Score=99.69  Aligned_cols=112  Identities=27%  Similarity=0.339  Sum_probs=71.9

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeeccc--CcccChh-hhcccCCCEEEcc-CCcccccchhhcCCcCCcEEeceee
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTK--VKIIPKS-IGNLLGLETLDLK-NTLVRELPVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~--l~~lp~~-~~~l~~L~~L~l~-~~~~~~lp~~~~~L~~L~~L~l~~n   77 (437)
                      ...+-+|.+..++.... .+.|++|-+.+|.  +..++.. |..|+.|++|||+ |..++.+|.++++|-+|++|+++..
T Consensus       527 r~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t  605 (889)
T KOG4658|consen  527 RMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT  605 (889)
T ss_pred             EEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC
Confidence            34455566655554432 2357777777775  5566554 4447777777777 4456777777777777777777777


Q ss_pred             ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL  120 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l  120 (437)
                      .++      .+|.+++++.+|.+|++..+.     +.....|.+|+.+
T Consensus       606 ~I~------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  606 GIS------HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             Ccc------ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            766      667777777777777777665     2223335555555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=6.9e-09  Score=104.10  Aligned_cols=96  Identities=22%  Similarity=0.248  Sum_probs=68.3

Q ss_pred             EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecccc
Q 047084            3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTA   81 (437)
Q Consensus         3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~   81 (437)
                      .+.++|.+..+..++.-++.|+.|+|++|++..+. .+..+++|++|||+.|.+..+|.- ...++ |+.|.+++|.++.
T Consensus       169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t  246 (1096)
T KOG1859|consen  169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT  246 (1096)
T ss_pred             hhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh
Confidence            35667777777667777778888888888876663 677788888888887777777763 23333 7778888887762


Q ss_pred             ccccccccccccCCccCcEEEeecCC
Q 047084           82 GFAAAKLHEGFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        82 ~~~~~~lp~~~~~l~~L~~L~l~~n~  107 (437)
                            + .++.+|.+|+.||+++|-
T Consensus       247 ------L-~gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  247 ------L-RGIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             ------h-hhHHhhhhhhccchhHhh
Confidence                  2 246677778888888775

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=2.8e-07  Score=87.85  Aligned_cols=164  Identities=14%  Similarity=0.079  Sum_probs=92.7

Q ss_pred             cCCCCCcEEEeecccCcccC--hhhhcccCCCEEEccCCcccccch---hhcCCcCCcEEeceeeccccccccccccccc
Q 047084           18 GNLFNLHYLSVKNTKVKIIP--KSIGNLLGLETLDLKNTLVRELPV---EIRNLKRLRYLMVYQYNYTAGFAAAKLHEGF   92 (437)
Q Consensus        18 ~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~l~~~~~~~lp~---~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~   92 (437)
                      +++.+|+...|.+..+...+  .....+++++.|+|+.|.+...-+   -...|++|+.|+++.|++.....  +  ..-
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--s--~~~  193 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--S--NTT  193 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc--c--cch
Confidence            35667777777777765544  355667778888887776665433   24577788888888887763220  0  011


Q ss_pred             cCCccCcEEEeecCC---------hHhHhhccchHhcccc-cccCCchhhcCCCCCeEEeeCCcCCCCCCC------Cch
Q 047084           93 GSLTNLQKLCIIEAD---------SEALKELMKLRQLRNL-LKTIPPPLAADRSTKKARFRSHEVDADSPS------PLS  156 (437)
Q Consensus        93 ~~l~~L~~L~l~~n~---------~~~~~~L~~L~~l~n~-~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~------~~~  156 (437)
                      ..+++|+.|.++.|.         ...++++..|..-.|- +..-......++.|+.|+|++|++- .++.      ...
T Consensus       194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccc
Confidence            356677777777776         2334555555544442 2111122334566777788777775 2221      114


Q ss_pred             hhhhhcCCCCCCCCch-----------hccceeeecCCCCc
Q 047084          157 FKDALVHPEQYRSSED-----------AEMEEEWDLEPGDV  186 (437)
Q Consensus       157 ~~~~~l~~n~l~~~~~-----------~~~~~~L~L~~n~l  186 (437)
                      +..+.++.+.++....           ...++.|+++.|++
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            4455555555522111           11246688888877

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=2.6e-07  Score=88.00  Aligned_cols=142  Identities=15%  Similarity=0.133  Sum_probs=75.1

Q ss_pred             EEecCCCCCcCCc--cccCCCCCcEEEeecccCc---ccChhhhcccCCCEEEccCCcccccchh--hcCCcCCcEEece
Q 047084            3 LDLEDAPVDYLPE--GVGNLFNLHYLSVKNTKVK---IIPKSIGNLLGLETLDLKNTLVRELPVE--IRNLKRLRYLMVY   75 (437)
Q Consensus         3 L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~l~~~~~~~lp~~--~~~L~~L~~L~l~   75 (437)
                      ..|.+..+...+.  ....|++++.||||.|-+.   .+-.-...|++|+.|+++.|.+...-.+  -..+.+|+.|.++
T Consensus       126 IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~  205 (505)
T KOG3207|consen  126 ISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLN  205 (505)
T ss_pred             eeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEec
Confidence            3455555555442  4566777777777777663   2223345577777777775554432221  2345666666676


Q ss_pred             eeccccccccccccccccCCccCcEEEeecCC--------hHhHhhccchHhcccccccCC--chhhcCCCCCeEEeeCC
Q 047084           76 QYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD--------SEALKELMKLRQLRNLLKTIP--PPLAADRSTKKARFRSH  145 (437)
Q Consensus        76 ~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~--------~~~~~~L~~L~~l~n~~~~ip--~~~~~l~~L~~L~l~~N  145 (437)
                      .+.++..    ++-..+...++|+.|+|..|.        ...+..|+.|+..+|.+...+  ...+.++.|..|+++.+
T Consensus       206 ~CGls~k----~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  206 SCGLSWK----DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             cCCCCHH----HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            6666622    222223445556666666552        122334444444455444444  33445555555555555


Q ss_pred             cCC
Q 047084          146 EVD  148 (437)
Q Consensus       146 ~l~  148 (437)
                      .++
T Consensus       282 gi~  284 (505)
T KOG3207|consen  282 GIA  284 (505)
T ss_pred             Ccc
Confidence            554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.21  E-value=1.5e-07  Score=75.95  Aligned_cols=80  Identities=15%  Similarity=0.286  Sum_probs=66.3

Q ss_pred             CCcEEEeecccCcccChhhhcc---cCCCEEEccCCcccccchhhc-CCcCCcEEeceeeccccccccccccccccCCcc
Q 047084           22 NLHYLSVKNTKVKIIPKSIGNL---LGLETLDLKNTLVRELPVEIR-NLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTN   97 (437)
Q Consensus        22 ~L~~L~L~~n~l~~lp~~~~~l---~~L~~L~l~~~~~~~lp~~~~-~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~   97 (437)
                      -+..++|+++++..+++....+   ..|...+|++|.+..+|+.|. ..+.++.|+|++|+++      ++|+.+..++.
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis------dvPeE~Aam~a  101 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS------DVPEELAAMPA  101 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh------hchHHHhhhHH
Confidence            4667899999988777766554   455566889999999999875 4458999999999998      78999999999


Q ss_pred             CcEEEeecCC
Q 047084           98 LQKLCIIEAD  107 (437)
Q Consensus        98 L~~L~l~~n~  107 (437)
                      |+.|+++.|.
T Consensus       102 Lr~lNl~~N~  111 (177)
T KOG4579|consen  102 LRSLNLRFNP  111 (177)
T ss_pred             hhhcccccCc
Confidence            9999999886

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.20  E-value=1.5e-06  Score=56.65  Aligned_cols=36  Identities=36%  Similarity=0.518  Sum_probs=17.4

Q ss_pred             CCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084           45 GLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus        45 ~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      +|++|++++|.++.+|+.+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            345555555555555544555555555555555544

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.19  E-value=2.3e-06  Score=79.50  Aligned_cols=218  Identities=14%  Similarity=0.165  Sum_probs=119.7

Q ss_pred             ccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCccc----ccchh-------hcCCcCCcEEeceeeccc
Q 047084           17 VGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVR----ELPVE-------IRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus        17 ~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~----~lp~~-------~~~L~~L~~L~l~~n~l~   80 (437)
                      +..+..++.++||+|.++     .+-+.+.+.++|+..++++-.++    .+|+.       +...++|++|+||.|-+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            456788999999999996     34456777889999999855544    45554       446679999999999986


Q ss_pred             cccccccccccccCCccCcEEEeecCChHhH------hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL------KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSP  154 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~------~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~  154 (437)
                      -.. .+.+-+-+.+++.|++|+|.+|.....      ..|..|...        ..++.-+.|+.+...+|++. ..+..
T Consensus       106 ~~g-~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~--------kk~~~~~~Lrv~i~~rNrle-n~ga~  175 (382)
T KOG1909|consen  106 PKG-IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVN--------KKAASKPKLRVFICGRNRLE-NGGAT  175 (382)
T ss_pred             ccc-hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHH--------hccCCCcceEEEEeeccccc-cccHH
Confidence            221 112223356788999999999972221      112222210        11122345666666666655 11111


Q ss_pred             ---------chhhhhhcCCCCCCC---------CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEE
Q 047084          155 ---------LSFKDALVHPEQYRS---------SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVV  216 (437)
Q Consensus       155 ---------~~~~~~~l~~n~l~~---------~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~  216 (437)
                               ..+.+..+..|.|.+         +.....++.|||..|-|+.-          ..-.+.+.-+.|...-.
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----------gs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----------GSVALAKALSSWPHLRE  245 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----------HHHHHHHHhcccchhee
Confidence                     123333444455422         12234567899999988711          11222223333432222


Q ss_pred             EEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084          217 VKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       217 ~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                      .++.+..++..--.......-...+.+.++.++.|.+.
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            33333334333322333333334566677777766654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=3.4e-06  Score=55.03  Aligned_cols=41  Identities=32%  Similarity=0.507  Sum_probs=30.4

Q ss_pred             CCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccch
Q 047084           21 FNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV   61 (437)
Q Consensus        21 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~   61 (437)
                      ++|++|++++|+|..+|+.+++|++|++|++++|.++.++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            36788888888888887778888888888888777776653

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.02  E-value=2.1e-06  Score=79.77  Aligned_cols=105  Identities=13%  Similarity=0.057  Sum_probs=53.0

Q ss_pred             EEEecCCCCC-cCCc----cccCCCCCcEEEeecccCcccC-----hh---------hhcccCCCEEEccCCcccccch-
Q 047084            2 VLDLEDAPVD-YLPE----GVGNLFNLHYLSVKNTKVKIIP-----KS---------IGNLLGLETLDLKNTLVRELPV-   61 (437)
Q Consensus         2 ~L~L~~n~l~-~lp~----~~~~l~~L~~L~L~~n~l~~lp-----~~---------~~~l~~L~~L~l~~~~~~~lp~-   61 (437)
                      +||||+|.++ .-++    -+..+..|+.|+|.+|.++...     .+         +..-+.|+++..++|++..-+. 
T Consensus        96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~  175 (382)
T KOG1909|consen   96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT  175 (382)
T ss_pred             EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH
Confidence            5666666652 1111    1344556666666666554221     11         1223456666666665554432 


Q ss_pred             ----hhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCC
Q 047084           62 ----EIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        62 ----~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~  107 (437)
                          .|...+.|+.+.++.|.|.-.. ...+...|..+++|+.|+|.+|-
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG-~~al~eal~~~~~LevLdl~DNt  224 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEG-VTALAEALEHCPHLEVLDLRDNT  224 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCch-hHHHHHHHHhCCcceeeecccch
Confidence                2555566666666666654111 01223345566666666666664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.93  E-value=1.3e-05  Score=69.09  Aligned_cols=103  Identities=17%  Similarity=0.267  Sum_probs=68.9

Q ss_pred             EEEecCCCCCcCCccc-cCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhc-CCcCCcEEeceeecc
Q 047084            2 VLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIR-NLKRLRYLMVYQYNY   79 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~-~L~~L~~L~l~~n~l   79 (437)
                      .++|++.++..+.. + .-+.....+||++|.+..+ ..|..+..|.+|.+++|.|..+.+.+. -+++|+.|.|.+|+|
T Consensus        23 e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   23 ELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             ccccccccccchhh-ccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            45666666544422 2 2245677788888887655 346677888888888888888877754 456788888888888


Q ss_pred             ccccccccccccccCCccCcEEEeecCChHh
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSEA  110 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~  110 (437)
                      .-..   ++ ..+..+++|++|.+-+|+...
T Consensus       101 ~~l~---dl-~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen  101 QELG---DL-DPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             hhhh---hc-chhccCCccceeeecCCchhc
Confidence            7221   22 235677788888888886433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.90  E-value=1.4e-06  Score=87.93  Aligned_cols=119  Identities=20%  Similarity=0.198  Sum_probs=62.6

Q ss_pred             CcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEE
Q 047084           23 LHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLC  102 (437)
Q Consensus        23 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~  102 (437)
                      |.+.+.++|.+..+..++.-++.|++|+|+.|++..+. .+..|++|++|||++|.++      .+|.--..-.+|+.|.
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~------~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR------HVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc------cccccchhhhhheeee
Confidence            44555566666555556666666667777766666555 5666666777777777666      3443211112366666


Q ss_pred             eecCChHhHhhccchHhc------ccccccCC--chhhcCCCCCeEEeeCCcCC
Q 047084          103 IIEADSEALKELMKLRQL------RNLLKTIP--PPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus       103 l~~n~~~~~~~L~~L~~l------~n~~~~ip--~~~~~l~~L~~L~l~~N~l~  148 (437)
                      +++|....+..+.+|+.|      .|++....  ..++.+..|+.|+|.+|.+-
T Consensus       239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            666654443333322222      23332222  23444555555555555553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.86  E-value=1.9e-05  Score=68.16  Aligned_cols=114  Identities=23%  Similarity=0.321  Sum_probs=70.8

Q ss_pred             CcEEEeecccCcccChhhhc-ccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccccccccccccccc-CCccCcE
Q 047084           23 LHYLSVKNTKVKIIPKSIGN-LLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFG-SLTNLQK  100 (437)
Q Consensus        23 L~~L~L~~n~l~~lp~~~~~-l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~-~l~~L~~  100 (437)
                      =+.++|++.++..+. .++. +.+...+||++|.+..++. |..++.|.+|.+++|+|+      .+...+. -+++|+.
T Consensus        21 e~e~~LR~lkip~ie-nlg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt------~I~p~L~~~~p~l~~   92 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIE-NLGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRIT------RIDPDLDTFLPNLKT   92 (233)
T ss_pred             ccccccccccccchh-hccccccccceecccccchhhccc-CCCccccceEEecCCcce------eeccchhhhccccce
Confidence            456777777664332 2333 4577888999888887764 778889999999999998      3444554 4567999


Q ss_pred             EEeecCChHhH---------hhccchHhcccccccCC----chhhcCCCCCeEEeeC
Q 047084          101 LCIIEADSEAL---------KELMKLRQLRNLLKTIP----PPLAADRSTKKARFRS  144 (437)
Q Consensus       101 L~l~~n~~~~~---------~~L~~L~~l~n~~~~ip----~~~~~l~~L~~L~l~~  144 (437)
                      |.+.+|+...+         +.|..|..+.|....-+    -.+..+++|+.||++.
T Consensus        93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             EEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            99999874433         23333333334333322    1244555666665443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=2.9e-05  Score=75.39  Aligned_cols=67  Identities=25%  Similarity=0.364  Sum_probs=37.1

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecc-cCcccChhhhcccCCCEEEccCC-cccccchhhcCCcCCcEEeceeecc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNT-KVKIIPKSIGNLLGLETLDLKNT-LVRELPVEIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~l~~~-~~~~lp~~~~~L~~L~~L~l~~n~l   79 (437)
                      +|++++|.++.+| .+  -.+|+.|.++++ .+..+|..+.  .+|++|.++++ .+..+|..      |+.|+++.|..
T Consensus        56 ~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~  124 (426)
T PRK15386         56 RLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKGSAT  124 (426)
T ss_pred             EEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCCCCC
Confidence            5667777666666 11  235677777653 3455554442  46677777643 55555543      44555554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.56  E-value=0.00012  Score=71.15  Aligned_cols=111  Identities=19%  Similarity=0.156  Sum_probs=72.3

Q ss_pred             cCCCCCcEEEeecccCcccChhhhcccCCCEEEcc-CCcccccchhhcCCcCCcEEeceee-ccccccccccccccccCC
Q 047084           18 GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLK-NTLVRELPVEIRNLKRLRYLMVYQY-NYTAGFAAAKLHEGFGSL   95 (437)
Q Consensus        18 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~-~~~~~~lp~~~~~L~~L~~L~l~~n-~l~~~~~~~~lp~~~~~l   95 (437)
                      ..+.+++.|++++|.|..+|.   --.+|++|.++ ++.+..+|..+.  ++|++|++++| .+.      .+|.     
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~------sLP~-----  112 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS------GLPE-----  112 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc------cccc-----
Confidence            347899999999999988882   23479999998 577788887653  58999999988 544      4565     


Q ss_pred             ccCcEEEeecCChHhHh----hccchHhcc-ccc--ccCCchhhcC-CCCCeEEeeCCcCC
Q 047084           96 TNLQKLCIIEADSEALK----ELMKLRQLR-NLL--KTIPPPLAAD-RSTKKARFRSHEVD  148 (437)
Q Consensus        96 ~~L~~L~l~~n~~~~~~----~L~~L~~l~-n~~--~~ip~~~~~l-~~L~~L~l~~N~l~  148 (437)
                       +|+.|+++.+....+.    +|..|..-. +..  ..+|.   .+ ++|++|++++|...
T Consensus       113 -sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        113 -SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI  169 (426)
T ss_pred             -ccceEEeCCCCCcccccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc
Confidence             4666777665522222    333333211 111  11121   12 57999999988866

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=3.8e-05  Score=70.12  Aligned_cols=61  Identities=20%  Similarity=0.154  Sum_probs=24.5

Q ss_pred             cCCCCCcEEEeecccCcccChhh-hcccCCCEEEccCCccc--ccchhhcCCcCCcEEeceeec
Q 047084           18 GNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVR--ELPVEIRNLKRLRYLMVYQYN   78 (437)
Q Consensus        18 ~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~n~   78 (437)
                      .+|++|++|+|+.|.+...-.++ ..+.+|++|-|.++.+.  .....+..+|.++.|++|.|+
T Consensus        94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen   94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            34455555555555442111111 22334444444433332  122224444455555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.30  E-value=0.00013  Score=76.62  Aligned_cols=135  Identities=16%  Similarity=0.222  Sum_probs=78.9

Q ss_pred             CEEEecCCCC--CcCCcccc-CCCCCcEEEeecccCc--ccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEece
Q 047084            1 KVLDLEDAPV--DYLPEGVG-NLFNLHYLSVKNTKVK--IIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVY   75 (437)
Q Consensus         1 ~~L~L~~n~l--~~lp~~~~-~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~   75 (437)
                      |+||+++...  ..-|..++ -|+.|+.|.+++-.+.  ++-.-..++++|..||++++.++.+ .+++.|++|+.|.+.
T Consensus       125 ~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  125 QHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMR  203 (699)
T ss_pred             hhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhcc
Confidence            3566666542  33344453 3677888888776652  3333445677888888887777777 567788888888777


Q ss_pred             eeccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084           76 QYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        76 ~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      +=.+....   .+ ..+.+|++|+.||+|......-..+..        ..+ +.-..++.|+.||.|+..++.
T Consensus       204 nLe~e~~~---~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~--------qYl-ec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  204 NLEFESYQ---DL-IDLFNLKKLRVLDISRDKNNDDTKIIE--------QYL-ECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             CCCCCchh---hH-HHHhcccCCCeeeccccccccchHHHH--------HHH-HhcccCccccEEecCCcchhH
Confidence            66655221   11 245677888888887654211110000        000 111236788888888777763

>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.12  E-value=0.00026  Score=36.28  Aligned_cols=18  Identities=33%  Similarity=0.851  Sum_probs=16.2

Q ss_pred             ccccccccccccCCCCCC
Q 047084          375 IICYQCGKYGHNSIVCQS  392 (437)
Q Consensus       375 ~~C~~cg~~gH~~~~C~~  392 (437)
                      ..|+.||..||....||.
T Consensus         1 ~~C~~C~~~GH~~~~Cp~   18 (18)
T PF00098_consen    1 RKCFNCGEPGHIARDCPK   18 (18)
T ss_dssp             SBCTTTSCSSSCGCTSSS
T ss_pred             CcCcCCCCcCcccccCcc
Confidence            369999999999999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=4.6e-05  Score=68.98  Aligned_cols=62  Identities=21%  Similarity=0.250  Sum_probs=28.6

Q ss_pred             cCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh--hcCCcCCcEEeceeeccc
Q 047084           18 GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE--IRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus        18 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~--~~~L~~L~~L~l~~n~l~   80 (437)
                      .+|+.|++|.||-|+|+.+ ..+..+++|++|+|..|.|..+.+-  +.+|++|+.|-|..|.-.
T Consensus        38 ~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             HhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence            3444555555555555444 2344444555555554444444331  344444444444444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.91  E-value=0.00037  Score=73.32  Aligned_cols=102  Identities=21%  Similarity=0.277  Sum_probs=61.3

Q ss_pred             ccCCCEEEccCCc-c-cccchhhc-CCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCCh---HhHhhccc
Q 047084           43 LLGLETLDLKNTL-V-RELPVEIR-NLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADS---EALKELMK  116 (437)
Q Consensus        43 l~~L~~L~l~~~~-~-~~lp~~~~-~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~---~~~~~L~~  116 (437)
                      -.+|++|++++.. + ..-|..++ .||+|+.|.+++=.+...    ++-.-..++++|..||+|+.+.   .+++.|++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~----dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~Lkn  196 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND----DFSQLCASFPNLRSLDISGTNISNLSGISRLKN  196 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch----hHHHHhhccCccceeecCCCCccCcHHHhcccc
Confidence            3567777777422 2 22333443 577788777776554421    2222345677778888887763   44555566


Q ss_pred             hHhc--ccc-cccCC--chhhcCCCCCeEEeeCCcCC
Q 047084          117 LRQL--RNL-LKTIP--PPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus       117 L~~l--~n~-~~~ip--~~~~~l~~L~~L~l~~N~l~  148 (437)
                      |+.|  +|+ +..-.  ..+++|++|+.||+|.....
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            6655  222 12111  35789999999999998877

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.83  E-value=0.0014  Score=59.33  Aligned_cols=144  Identities=16%  Similarity=0.176  Sum_probs=86.1

Q ss_pred             EEEecCCCCCc-----CCccccCCCCCcEEEeecccCc----ccCh-------hhhcccCCCEEEccCCccc-ccchh--
Q 047084            2 VLDLEDAPVDY-----LPEGVGNLFNLHYLSVKNTKVK----IIPK-------SIGNLLGLETLDLKNTLVR-ELPVE--   62 (437)
Q Consensus         2 ~L~L~~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~----~lp~-------~~~~l~~L~~L~l~~~~~~-~lp~~--   62 (437)
                      .+|||+|-|++     +...+.+-.+|+..+++.-..+    ++++       ++-.+++|+..+||.|.++ ..|+.  
T Consensus        34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~  113 (388)
T COG5238          34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG  113 (388)
T ss_pred             EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence            47888888742     3334556677777777764332    3443       3446778888888866555 34443  


Q ss_pred             --hcCCcCCcEEeceeeccccccccccccc---------cccCCccCcEEEeecCChHhH------------hhccchHh
Q 047084           63 --IRNLKRLRYLMVYQYNYTAGFAAAKLHE---------GFGSLTNLQKLCIIEADSEAL------------KELMKLRQ  119 (437)
Q Consensus        63 --~~~L~~L~~L~l~~n~l~~~~~~~~lp~---------~~~~l~~L~~L~l~~n~~~~~------------~~L~~L~~  119 (437)
                        +.+-+.|.+|.|++|.+- .+....+..         ....-+.|++.....|++...            .+|+.++.
T Consensus       114 d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki  192 (388)
T COG5238         114 DLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKI  192 (388)
T ss_pred             HHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEe
Confidence              566777888888877664 111112221         123446788888888763221            13333333


Q ss_pred             cccccccCCc--------hhhcCCCCCeEEeeCCcCC
Q 047084          120 LRNLLKTIPP--------PLAADRSTKKARFRSHEVD  148 (437)
Q Consensus       120 l~n~~~~ip~--------~~~~l~~L~~L~l~~N~l~  148 (437)
                      ..|-+.  |.        .++.+.+|+.|+|++|-++
T Consensus       193 ~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         193 QQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             eecCcC--cchhHHHHHHHHHHhCcceeeeccccchh
Confidence            334332  32        3567889999999999998

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.83  E-value=0.0021  Score=58.36  Aligned_cols=90  Identities=14%  Similarity=0.207  Sum_probs=65.5

Q ss_pred             ccCCCCCcEEEeecccCc-c----cChhhhcccCCCEEEccCCcccc----cchh-------hcCCcCCcEEeceeeccc
Q 047084           17 VGNLFNLHYLSVKNTKVK-I----IPKSIGNLLGLETLDLKNTLVRE----LPVE-------IRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus        17 ~~~l~~L~~L~L~~n~l~-~----lp~~~~~l~~L~~L~l~~~~~~~----lp~~-------~~~L~~L~~L~l~~n~l~   80 (437)
                      +.-+..+..++||+|.|+ +    +...+.+-.+|+..+++.-+++.    +|..       +.++++|+..+||.|-+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            344788999999999996 2    33456667788888888555543    3433       567899999999999997


Q ss_pred             cccccccccccccCCccCcEEEeecCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~  107 (437)
                      ...+ +.+-+-+.+-+.|.+|.+++|.
T Consensus       106 ~~~~-e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238         106 SEFP-EELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             cccc-hHHHHHHhcCCCceeEEeecCC
Confidence            5441 1222335677899999999997

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.67  E-value=4.3e-05  Score=67.43  Aligned_cols=93  Identities=13%  Similarity=0.155  Sum_probs=81.4

Q ss_pred             CCCcCCc-cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccccccccc
Q 047084            9 PVDYLPE-GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAK   87 (437)
Q Consensus         9 ~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~   87 (437)
                      .+.++|- ++......+.||++.|++..+-..++-++.|..|+++.|.+..+|.+++++..++.+++..|..+      .
T Consensus        29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~------~  102 (326)
T KOG0473|consen   29 ELSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS------Q  102 (326)
T ss_pred             HhcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh------h
Confidence            3456653 56777889999999999888878888899999999999999999999999999999999999887      7


Q ss_pred             ccccccCCccCcEEEeecCC
Q 047084           88 LHEGFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        88 lp~~~~~l~~L~~L~l~~n~  107 (437)
                      .|.+++.+++++++++..|.
T Consensus       103 ~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  103 QPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             CCccccccCCcchhhhccCc
Confidence            79999999999999999887

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.00019  Score=65.79  Aligned_cols=143  Identities=15%  Similarity=0.092  Sum_probs=85.9

Q ss_pred             CEEEecCCCCC--cCCccccCCCCCcEEEeecccCc-ccChhhhcccCCCEEEcc-CCcccccch--hhcCCcCCcEEec
Q 047084            1 KVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLK-NTLVRELPV--EIRNLKRLRYLMV   74 (437)
Q Consensus         1 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~-~~~~~~lp~--~~~~L~~L~~L~l   74 (437)
                      ++||||...|+  .+..-+..+.+|+.|.|.+++++ .+-..+..-..|+.|+++ .+.++.-.-  -+.+++.|..|++
T Consensus       188 q~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl  267 (419)
T KOG2120|consen  188 QHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL  267 (419)
T ss_pred             HHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc
Confidence            35677776653  33333567778888888888874 555667777888888888 666665433  3678888888888


Q ss_pred             eeeccccccccccccccccCC-ccCcEEEeecCC-------hHh----HhhccchHhccc-cc-ccCCchhhcCCCCCeE
Q 047084           75 YQYNYTAGFAAAKLHEGFGSL-TNLQKLCIIEAD-------SEA----LKELMKLRQLRN-LL-KTIPPPLAADRSTKKA  140 (437)
Q Consensus        75 ~~n~l~~~~~~~~lp~~~~~l-~~L~~L~l~~n~-------~~~----~~~L~~L~~l~n-~~-~~ip~~~~~l~~L~~L  140 (437)
                      +.+.++...    +-..+... .+|..|++++..       .+.    .+++.+|+..++ .+ ...-..|..++.|++|
T Consensus       268 sWc~l~~~~----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  268 SWCFLFTEK----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hHhhccchh----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            888776321    11112222 356667776654       111    134445544422 12 1222346677788888


Q ss_pred             EeeCCcC
Q 047084          141 RFRSHEV  147 (437)
Q Consensus       141 ~l~~N~l  147 (437)
                      .++.+..
T Consensus       344 SlsRCY~  350 (419)
T KOG2120|consen  344 SLSRCYD  350 (419)
T ss_pred             ehhhhcC
Confidence            8877764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.00091  Score=61.36  Aligned_cols=38  Identities=18%  Similarity=0.272  Sum_probs=18.6

Q ss_pred             ccCCCEEEccCCcccccchh---hcCCcCCcEEeceeeccc
Q 047084           43 LLGLETLDLKNTLVRELPVE---IRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus        43 l~~L~~L~l~~~~~~~lp~~---~~~L~~L~~L~l~~n~l~   80 (437)
                      .+.+++|||.+|.++...+-   +.+||.|+.|+++.|.+.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS  110 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence            34455555555554443331   345555555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.52  E-value=6.8e-05  Score=66.18  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      +||++.|++..+-..|+.++.|..|+++.|++..+|..++.+..+.++++.+|..+..|.+++.+++++++++-.|.+.
T Consensus        46 vld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   46 VLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             eehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence            5677777776666666667777777777777777777777777777777777777777777777777777777776655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.00034  Score=63.49  Aligned_cols=82  Identities=22%  Similarity=0.186  Sum_probs=63.4

Q ss_pred             CCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCc
Q 047084           20 LFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQ   99 (437)
Q Consensus        20 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~   99 (437)
                      |.+.+.|+.-++.|..| +-...|+.|++|.|+-|.|+.+.+ +..+++|++|+|..|.|....   +| .-+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sld---EL-~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLD---EL-EYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHH---HH-HHHhcCchhh
Confidence            56677888888888765 334579999999999888887754 678899999999999887432   12 2367889999


Q ss_pred             EEEeecCC
Q 047084          100 KLCIIEAD  107 (437)
Q Consensus       100 ~L~l~~n~  107 (437)
                      .|.|..|.
T Consensus        92 ~LWL~ENP   99 (388)
T KOG2123|consen   92 TLWLDENP   99 (388)
T ss_pred             hHhhccCC
Confidence            99998885

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.32  E-value=0.0022  Score=57.93  Aligned_cols=85  Identities=21%  Similarity=0.264  Sum_probs=44.1

Q ss_pred             cCCCCCcEEEeecccCcccChhhhcccCCCEEEccCC--c-ccccchhhcCCcCCcEEeceeeccccccccccccccccC
Q 047084           18 GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNT--L-VRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGS   94 (437)
Q Consensus        18 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~--~-~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~   94 (437)
                      -.+..|+.|.+.+..++.+ ..+-.|++|+.|.++.|  . .+.++.-...+++|++|+++.|+++-.   +.++ .+..
T Consensus        40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l---stl~-pl~~  114 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL---STLR-PLKE  114 (260)
T ss_pred             ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc---cccc-hhhh
Confidence            3344555555555544332 23345666777777744  1 223444344557777777777776621   1222 1344


Q ss_pred             CccCcEEEeecCC
Q 047084           95 LTNLQKLCIIEAD  107 (437)
Q Consensus        95 l~~L~~L~l~~n~  107 (437)
                      +.+|..|++.+|.
T Consensus       115 l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  115 LENLKSLDLFNCS  127 (260)
T ss_pred             hcchhhhhcccCC
Confidence            5556666666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.31  E-value=0.0013  Score=59.23  Aligned_cols=73  Identities=18%  Similarity=0.300  Sum_probs=53.6

Q ss_pred             CCCCCcCCccccCCCCCcEEEeecc--cC-cccChhhhcccCCCEEEccCCcccccch--hhcCCcCCcEEeceeeccc
Q 047084            7 DAPVDYLPEGVGNLFNLHYLSVKNT--KV-KIIPKSIGNLLGLETLDLKNTLVRELPV--EIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         7 ~n~l~~lp~~~~~l~~L~~L~L~~n--~l-~~lp~~~~~l~~L~~L~l~~~~~~~lp~--~~~~L~~L~~L~l~~n~l~   80 (437)
                      +..++.+ ..+..|++|+.|.+|.|  ++ ..++.-.-.+++|++|+++.|.+..+..  .+..+++|..|++++|..+
T Consensus        52 n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   52 NVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             ccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            3334333 35667889999999999  55 3555555566999999999998876432  2677888999999988766

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.17  E-value=0.0017  Score=35.32  Aligned_cols=19  Identities=32%  Similarity=0.627  Sum_probs=9.6

Q ss_pred             CcEEEeecccCcccChhhh
Q 047084           23 LHYLSVKNTKVKIIPKSIG   41 (437)
Q Consensus        23 L~~L~L~~n~l~~lp~~~~   41 (437)
                      |++|||++|+|+.+|+.|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=0.0012  Score=60.71  Aligned_cols=123  Identities=15%  Similarity=0.108  Sum_probs=67.0

Q ss_pred             CcEEEeecccCc--ccChhhhcccCCCEEEccCCccc-ccchhhcCCcCCcEEeceeeccccccccccccccccCCccCc
Q 047084           23 LHYLSVKNTKVK--IIPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQ   99 (437)
Q Consensus        23 L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~   99 (437)
                      |++||||+..|+  .+..-+..+.+|+.|.+.++.+. .+-..+..-.+|+.|+++...  |.. ...+.--+.+++.|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t-~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFT-ENALQLLLSSCSRLD  263 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccc-hhHHHHHHHhhhhHh
Confidence            677777776663  44444566677777777755544 344456666777777776543  211 001222346677777


Q ss_pred             EEEeecCCh---------HhH-hhccchHhc---cccccc-CCchhhcCCCCCeEEeeCCcCC
Q 047084          100 KLCIIEADS---------EAL-KELMKLRQL---RNLLKT-IPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus       100 ~L~l~~n~~---------~~~-~~L~~L~~l---~n~~~~-ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      .|+++.+..         ..+ ..|++|...   +|+... +..-..++++|..||||+|..-
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l  326 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML  326 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence            777776641         011 344444443   233322 2222246777888888776543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.49  E-value=0.0067  Score=32.88  Aligned_cols=12  Identities=42%  Similarity=0.473  Sum_probs=6.6

Q ss_pred             CcEEeceeeccc
Q 047084           69 LRYLMVYQYNYT   80 (437)
Q Consensus        69 L~~L~l~~n~l~   80 (437)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            455555555555

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.23  E-value=0.032  Score=45.40  Aligned_cols=84  Identities=21%  Similarity=0.319  Sum_probs=47.8

Q ss_pred             CCc-cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecccccccccccc
Q 047084           13 LPE-GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLH   89 (437)
Q Consensus        13 lp~-~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~~lp   89 (437)
                      |++ .|.++.+|+.+.+.. .+..++. .|.++++|+.+.+.++ +..++.. |.++++|+.+.+.. .+.      .++
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~------~i~   73 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK------SIG   73 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-------EE-
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc------ccc
Confidence            444 467777888888875 5666664 4667778998888765 6677664 77887888888864 333      233


Q ss_pred             c-cccCCccCcEEEeec
Q 047084           90 E-GFGSLTNLQKLCIIE  105 (437)
Q Consensus        90 ~-~~~~l~~L~~L~l~~  105 (437)
                      . .|..+++|+.+.+..
T Consensus        74 ~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   74 DNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             TTTTTT-TTECEEEETT
T ss_pred             cccccccccccccccCc
Confidence            3 366688888887754

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=94.67  E-value=0.26  Score=45.09  Aligned_cols=161  Identities=17%  Similarity=0.259  Sum_probs=100.7

Q ss_pred             cCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHHHh-HHcCceEEcCceEEEeecCCCCCCCcccccce
Q 047084          220 LGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYA-LTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSA  298 (437)
Q Consensus       220 ~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~~v-l~~~pw~~~~~~l~l~~w~~~~~~~~~~~~~~  298 (437)
                      ..-++..+.-...+...|...+++...|+-.|+=-+..+....-... ..-.-+.+++-.+.++.-+....++       
T Consensus         6 FIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~s-------   78 (346)
T KOG0109|consen    6 FIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKAS-------   78 (346)
T ss_pred             hccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCc-------
Confidence            33344555556677788999999999999999855555554444433 3356677777777777555442222       


Q ss_pred             eEEEEecCCccccccHHHHHHHhhccCcEEEEecccccccCCcEEEEEEEeeCCCCceeEE------EEeCeE--EEEEE
Q 047084          299 IVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALRERGKFARIAVRISLSQPLLSRF------NIDGKI--QKVEY  370 (437)
Q Consensus       299 p~Wvri~~Lp~~~~~~~~l~~i~~~iG~~l~vd~~~~~~~~~~~~rv~V~id~~kpl~~~i------~~~g~~--~~v~Y  370 (437)
                       .-+.+.|+.....+.+. .+.-..-|.+++-|....      |  ..|.+|...-....|      .+.|+.  +++.-
T Consensus        79 -tkl~vgNis~tctn~El-Ra~fe~ygpviecdivkd------y--~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st  148 (346)
T KOG0109|consen   79 -TKLHVGNISPTCTNQEL-RAKFEKYGPVIECDIVKD------Y--AFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST  148 (346)
T ss_pred             -cccccCCCCccccCHHH-hhhhcccCCceeeeeecc------e--eEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence             23345677777766664 444567788888777533      3  234555444333222      345654  34444


Q ss_pred             ccC--------cccccccccccccCCCCCCccccc
Q 047084          371 EGL--------PIICYQCGKYGHNSIVCQSKQKMN  397 (437)
Q Consensus       371 E~l--------p~~C~~cg~~gH~~~~C~~~~~~~  397 (437)
                      .++        +--|+.||+-||-.++||......
T Consensus       149 srlrtapgmgDq~~cyrcGkeghwskEcP~~~~~r  183 (346)
T KOG0109|consen  149 SRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGR  183 (346)
T ss_pred             cccccCCCCCCHHHheeccccccccccCCccCCCc
Confidence            443        357999999999999999965443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.45  E-value=0.084  Score=42.91  Aligned_cols=93  Identities=17%  Similarity=0.290  Sum_probs=54.7

Q ss_pred             EEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      .+.+.. .+..++. .|.++.+|+.+.+..+ +..++. .+.++.+|+.+.+.+ .+..++.. |..+++|+.+++..+ 
T Consensus        16 ~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-   91 (129)
T PF13306_consen   16 SITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-   91 (129)
T ss_dssp             EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT-
T ss_pred             EEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-
Confidence            345543 4667755 5788889999999885 777764 566787999999976 55556654 778999999999765 


Q ss_pred             cccccccccccc-cccCCccCcEEEeec
Q 047084           79 YTAGFAAAKLHE-GFGSLTNLQKLCIIE  105 (437)
Q Consensus        79 l~~~~~~~~lp~-~~~~l~~L~~L~l~~  105 (437)
                      ++      .++. .|.+. +|+.+.+..
T Consensus        92 ~~------~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   92 IT------EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -B------EEHTTTTTT--T--EEE-TT
T ss_pred             cc------EEchhhhcCC-CceEEEECC
Confidence            44      3343 36666 888887654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.43  E-value=0.024  Score=28.54  Aligned_cols=16  Identities=31%  Similarity=0.634  Sum_probs=6.8

Q ss_pred             CCcEEEeecccCcccC
Q 047084           22 NLHYLSVKNTKVKIIP   37 (437)
Q Consensus        22 ~L~~L~L~~n~l~~lp   37 (437)
                      +|+.|+|++|++.++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4556666666555443

...

>PF13696 zf-CCHC_2: Zinc knuckle

Probab=93.83  E-value=0.028  Score=33.23  Aligned_cols=19  Identities=32%  Similarity=0.819  Sum_probs=17.6

Q ss_pred             ccccccccccccCCCCCCc
Q 047084          375 IICYQCGKYGHNSIVCQSK  393 (437)
Q Consensus       375 ~~C~~cg~~gH~~~~C~~~  393 (437)
                      ..|..|+.-||..+.||..
T Consensus         9 Y~C~~C~~~GH~i~dCP~~   27 (32)
T PF13696_consen    9 YVCHRCGQKGHWIQDCPTN   27 (32)
T ss_pred             CEeecCCCCCccHhHCCCC
Confidence            6899999999999999983

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.80  E-value=0.052  Score=30.62  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=12.8

Q ss_pred             CCCCcEEEeecccCcccChhh
Q 047084           20 LFNLHYLSVKNTKVKIIPKSI   40 (437)
Q Consensus        20 l~~L~~L~L~~n~l~~lp~~~   40 (437)
                      |++|++|+|++|+|..+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            345666666666666666543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.80  E-value=0.052  Score=30.62  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=12.8

Q ss_pred             CCCCcEEEeecccCcccChhh
Q 047084           20 LFNLHYLSVKNTKVKIIPKSI   40 (437)
Q Consensus        20 l~~L~~L~L~~n~l~~lp~~~   40 (437)
                      |++|++|+|++|+|..+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            345666666666666666543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.08  E-value=0.058  Score=27.12  Aligned_cols=17  Identities=6%  Similarity=0.239  Sum_probs=9.3

Q ss_pred             CCCCeEEeeCCcCCCCCC
Q 047084          135 RSTKKARFRSHEVDADSP  152 (437)
Q Consensus       135 ~~L~~L~l~~N~l~~~~p  152 (437)
                      ++|+.|++++|+|+ .+|
T Consensus         1 ~~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             TT-SEEEETSS--S-SE-
T ss_pred             CccCEEECCCCCCC-CCc
Confidence            46788888888876 443

...

>smart00343 ZnF_C2HC zinc finger

Probab=92.20  E-value=0.061  Score=30.42  Aligned_cols=18  Identities=44%  Similarity=0.977  Sum_probs=15.9

Q ss_pred             cccccccccccCCCCCCc
Q 047084          376 ICYQCGKYGHNSIVCQSK  393 (437)
Q Consensus       376 ~C~~cg~~gH~~~~C~~~  393 (437)
                      .|+.||..||....|+..
T Consensus         1 ~C~~CG~~GH~~~~C~~~   18 (26)
T smart00343        1 KCYNCGKEGHIARDCPKX   18 (26)
T ss_pred             CCccCCCCCcchhhCCcc
Confidence            599999999999999843

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.00  E-value=0.27  Score=27.60  Aligned_cols=19  Identities=37%  Similarity=0.504  Sum_probs=9.5

Q ss_pred             cCCCEEEccCCcccccchh
Q 047084           44 LGLETLDLKNTLVRELPVE   62 (437)
Q Consensus        44 ~~L~~L~l~~~~~~~lp~~   62 (437)
                      ++|++|+|++|.+..+|.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.00  E-value=0.27  Score=27.60  Aligned_cols=19  Identities=37%  Similarity=0.504  Sum_probs=9.5

Q ss_pred             cCCCEEEccCCcccccchh
Q 047084           44 LGLETLDLKNTLVRELPVE   62 (437)
Q Consensus        44 ~~L~~L~l~~~~~~~lp~~   62 (437)
                      ++|++|+|++|.+..+|.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555555443

>PF15288 zf-CCHC_6: Zinc knuckle

Probab=89.39  E-value=0.19  Score=31.43  Aligned_cols=20  Identities=30%  Similarity=0.757  Sum_probs=17.1

Q ss_pred             ccccccccccccC--CCCCCcc
Q 047084          375 IICYQCGKYGHNS--IVCQSKQ  394 (437)
Q Consensus       375 ~~C~~cg~~gH~~--~~C~~~~  394 (437)
                      ..|..||-+||..  +.||...
T Consensus         2 ~kC~~CG~~GH~~t~k~CP~~~   23 (40)
T PF15288_consen    2 VKCKNCGAFGHMRTNKRCPMYC   23 (40)
T ss_pred             ccccccccccccccCccCCCCC
Confidence            4699999999987  7898865

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.34  E-value=0.75  Score=25.90  Aligned_cols=17  Identities=29%  Similarity=0.563  Sum_probs=10.3

Q ss_pred             CCcEEEeecccCcccCh
Q 047084           22 NLHYLSVKNTKVKIIPK   38 (437)
Q Consensus        22 ~L~~L~L~~n~l~~lp~   38 (437)
                      +|+.|++++|++..+|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45666666666666554

>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=80.17  E-value=0.91  Score=39.22  Aligned_cols=17  Identities=47%  Similarity=1.017  Sum_probs=14.5

Q ss_pred             ccccccccccccCCCCC
Q 047084          375 IICYQCGKYGHNSIVCQ  391 (437)
Q Consensus       375 ~~C~~cg~~gH~~~~C~  391 (437)
                      ..|+.||..||....|+
T Consensus        98 ~~C~~Cg~~GH~~~dC~  114 (190)
T COG5082          98 KKCYNCGETGHLSRDCN  114 (190)
T ss_pred             cccccccccCccccccC
Confidence            68889999999999993

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	437
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		5e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 2   VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV 61
            L+L   P+   P+    L +L + ++    +  +P +     GLETL L    +R LP 
Sbjct: 85  ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 62  EIRNLKRLRYLMVYQY-------NYTAGFAAAKLHEGFGSLTNLQKL 101
            I +L RLR L +             A   A+  H+G   L NLQ L
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQG---LVNLQSL 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	437
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 11/140 (7%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             L+L   P+   P+    L +L ++++    +  +P ++    GLETL L    +R LP
Sbjct: 84  VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP 143

Query: 61  VEIRNLKRLRYLMVYQYNYT----AGFAAAKLHEGFGSLTNLQKLCI----IEADSEALK 112
             I +L RLR L +             A+         L NLQ L +    I +   ++ 
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA 203

Query: 113 ELMKLRQL---RNLLKTIPP 129
            L  L+ L    + L  + P
Sbjct: 204 NLQNLKSLKIRNSPLSALGP 223

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 20/143 (13%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDL-KNTLVREL 59
           + L LE   +  LP  + NL NL  L ++N+ +  +  +I +L  LE LDL   T +R  
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 60  PVEIRNLKRLRYLMVYQYNYTAGFAAAKLH---EGFGSLTNLQKLCI-----IEADSEAL 111
           P        L+ L++   +         L         LT L+KL +     +      +
Sbjct: 246 PPIFGGRAPLKRLILKDCS--------NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 112 KELMKLRQLR---NLLKTIPPPL 131
            +L     +    +L   +    
Sbjct: 298 AQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 14/126 (11%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYL 72
                  L NL  L ++ T ++ +P SI NL  L++L ++N+ +  L   I +L +L  L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234

Query: 73  MVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-EAL-KELMKLRQLRNL------- 123
            +                 FG    L++L + +  +   L  ++ +L QL  L       
Sbjct: 235 DLRGCTAL-----RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 124 LKTIPP 129
           L  +P 
Sbjct: 290 LSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 25/136 (18%)

Query: 13  LPEGVGNL--FNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLR 70
             + + +        L +++  +   P     L  L+ + +    + ELP  ++    L 
Sbjct: 71  TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLE 130

Query: 71  YLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIE-----------ADSEALKELMKLRQ 119
            L +   N         L     SL  L++L I             A ++A  E   L  
Sbjct: 131 TLTL-ARN-----PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 120 LRNL------LKTIPP 129
           L++L      ++++P 
Sbjct: 185 LQSLRLEWTGIRSLPA 200

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 16/139 (11%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNL--LGLETLDLKNTLVRE 58
           +     D    +      N  N    +     +K     + +    G   L+L++  + +
Sbjct: 36  QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ 95

Query: 59  LPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL----CIIEADSEALKEL 114
            P +   L  L+++ +            +L +       L+ L      + A   ++  L
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLM------ELPDTMQQFAGLETLTLARNPLRALPASIASL 149

Query: 115 MKLRQL----RNLLKTIPP 129
            +LR+L       L  +P 
Sbjct: 150 NRLRELSIRACPELTELPE 168

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 16/141 (11%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVREL 59
           + ++L+      +          L  L +  T +  +P  +  L  L+ L L       L
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316

Query: 60  P-VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI-------IEADSEAL 111
             +   N   L +L +                   +L NL++L +        +  +  L
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGT----GCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 112 KELMKLRQLR---NLLKTIPP 129
           + L  L+ L    N   ++  
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKT 393

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 18/170 (10%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNTLVRE 58
             LDL    + ++ E    +   L  L +    +  +   ++     L+ L    T +  
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

Query: 59  LPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEALK 112
           +    + N K L  L +   N+    ++ KL +       L+ L      I     E + 
Sbjct: 120 IDFIPLHNQKTLESLYL-GSNH---ISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 113 ELMKLRQL-----RNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSF 157
            L +   L      N +  I P        +   F   +        L  
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 17/140 (12%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTK-VKIIPKSIGNLLGLETLDLKNTLVREL 59
           K  + E+  ++ +P  + N  +   L         I   +   L+ L  LDL    +  +
Sbjct: 15  KTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 60  PVE-IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEALKE 113
             +  ++  RL  L++   N     A             L+ L      I   D   L  
Sbjct: 73  HEDTFQSQHRLDTLVL-TANPLIFMAE----TALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 114 LMKLRQL---RNLLKTIPPP 130
              L  L    N + +I  P
Sbjct: 128 QKTLESLYLGSNHISSIKLP 147

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 1   KVLDLED---APVDYLPEGVGNLFNLHYLSV-KNTKVKIIPKSIGNLLGLETLDLKNTLV 56
           + LDL        D     + NL +L  L++  N  + +  ++      LE LDL  T +
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 57  RELPVE--IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL--------CIIEA 106
           +    +   +NL  L+ L +  ++     +     + F  L  LQ L             
Sbjct: 413 KVKDAQSPFQNLHLLKVLNL-SHSLLDISSE----QLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 107 DSEALKELMKLRQL---RNLLKTIPP 129
            + +L+ L +L  L      L +I  
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQ 493

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDL-KNTLVRE 58
           +V D     +  +P+ +    N+  L++ + +++ +   +      L +LD+  NT+ + 
Sbjct: 7   EVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 59  LPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEALKE 113
            P   + L  L+ L + Q+N  +  +     + F   TNL +L      I +  +    +
Sbjct: 65  EPELCQKLPMLKVLNL-QHNELSQLSD----KTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 114 LMKLRQL---RNLLKTIPPP 130
              L  L    N L +    
Sbjct: 120 QKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 19  NLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKRLRYLMVYQ 76
              NL  L +    +  +   S   L  LE   L  N +       +  L  +RYL + +
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 77  YNYTAGFAAAKLHE----GFGSLTNLQKL-----CIIEADSEALKELMKLRQL---RNLL 124
                  + A L +     F  L  L+ L      I    S     L+ L+ L    +  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 125 KTIPPP 130
                 
Sbjct: 366 SLRTLT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 29/153 (18%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDL------- 51
            +LDL    ++ +       L  L Y  ++   ++ +   S+  L  +  L+L       
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 52  ---KNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL------- 101
                +L +      + LK L +L + + N   G  +      F  L NL+ L       
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNM-EDNDIPGIKS----NMFTGLINLKYLSLSNSFT 365

Query: 102 CIIEADSEALKELM--KLRQL---RNLLKTIPP 129
            +    +E    L    L  L   +N +  I  
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 25/132 (18%), Positives = 37/132 (28%), Gaps = 25/132 (18%)

Query: 18  GNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKN---TLVRELPVEIRNLKRLRYLM 73
             L N+  + +   K   +   S   +  L+ L L+      V   P   + L+ L  L 
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 74  VYQYNYTAGFAAAKLHEGFGSLTNLQKL-------------CIIEADSEALKELMKLRQL 120
           +   N  A        +    L  L+ L                      LK L  L  L
Sbjct: 487 L-SNNNIANIND----DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 121 ---RNLLKTIPP 129
               N    IP 
Sbjct: 542 NLESNGFDEIPV 553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 15/141 (10%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVK--IIPKSIGNLLGLETLDLKNTLVR 57
            +L+L    +  +       L +L  L +   ++   +  +    L  +  + L      
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 58  ELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLC-----IIEADSEAL 111
           +L       +  L+ LM+ +               F  L NL  L      I   + + L
Sbjct: 444 QLTRNSFALVPSLQRLML-RRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 112 KELMKLRQL---RNLLKTIPP 129
           + L KL  L    N L  +  
Sbjct: 501 EGLEKLEILDLQHNNLARLWK 521

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 25/152 (16%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKV----------KIIPKSIGNLLGLETL 49
           +   LE   + +L       LFN+ YL++K +            KI   S   L  LE L
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 50  DL-KNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTN--LQKL----- 101
           ++  N +          L  L+YL +   ++T+       +E F SL +  L  L     
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSL-SNSFTSLR--TLTNETFVSLAHSPLHILNLTKN 391

Query: 102 CIIEADSEALKELMKLRQLR---NLLKTIPPP 130
            I + +S+A   L  L  L    N +      
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTK-VKIIPKSIGNLLGLETLDLKN---TL 55
             L L    +  +         NL  L + +         +   L  L+ L L N     
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 56  VRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEA 110
           ++   ++I     L+ L +   N    F+       F ++  L  L      +  + +E 
Sbjct: 160 LKSEELDIFANSSLKKLEL-SSNQIKEFSP----GCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 111 LKELMKLRQLRNL------LKTIPP 129
           L   +    +RNL      L T   
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 1   KVLDL---------EDAPVDYLPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLD 50
           ++LDL         + A        +  L +LH L++++     I  +   +L  L+ +D
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 51  LKNTLVRELPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNL 98
           L    +  LP  +  N   L+ L + Q N             F +LT L
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNL-QKNLITSVEKKVFGPAFRNLTEL 614

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 9e-10
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 15/135 (11%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           + L+L    +  +   + NL  L  L +   K+  I  ++ NL  L  L L    + ++ 
Sbjct: 69  EYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDIS 126

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIE---ADSEALKELMKL 117
             + NL ++  L +   +               ++T L  L + E    D   +  L  L
Sbjct: 127 -PLANLTKMYSLNLGANHNL------SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDL 179

Query: 118 RQL---RNLLKTIPP 129
             L    N ++ I P
Sbjct: 180 YSLSLNYNQIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 7e-09
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 15  EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMV 74
             V N+  L+ L + N K+  +   + NL  L  L++    + ++   +++L +L+ L V
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNV 272

Query: 75  YQYNYTAGFAAAKLHEGFGSLTNLQKLC-----IIEADSEALKELMKLRQL---RNLLKT 126
              N  +            +L+ L  L      +   D E +  L  L  L   +N +  
Sbjct: 273 G-SNQISDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 127 IPP 129
           I P
Sbjct: 326 IRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           + L L +  +  +   + NL  ++ L++           + N+ GL  L +  + V+++ 
Sbjct: 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIE---ADSEALKELMKL 117
             I NL  L  L +  YN               SLT+L           D   +  + +L
Sbjct: 172 -PIANLTDLYSLSLN-YNQIEDI------SPLASLTSLHYFTAYVNQITDITPVANMTRL 223

Query: 118 RQL---RNLLKTIPP 129
             L    N +  + P
Sbjct: 224 NSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 14  PEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLM 73
                 L ++  L V   KV  I   I  L  LE L+L    + ++   + NL +L  L 
Sbjct: 37  VVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLY 94

Query: 74  VYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIE---ADSEALKELMKLRQL---RNLLKTI 127
           +   N               +LTNL++L + E   +D   L  L K+  L    N   + 
Sbjct: 95  IGT-NKITDI------SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSD 147

Query: 128 PPPLA 132
             PL+
Sbjct: 148 LSPLS 152

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 14  PEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYL 72
              V +L  L  L+V + ++  I   + NL  L +L L N  +    +E I  L  L  L
Sbjct: 258 INAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 73  MVYQYNYTAGFAAAKLHEGFGSLTNLQKL 101
            +   N+              SL+ +   
Sbjct: 317 FLS-QNHITDI------RPLASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 26  LSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAA 85
           L+     +  I     +L       L+   V ++      L+ +  L+V           
Sbjct: 5   LATLPAPINQIF-PDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVA----- 57

Query: 86  AKLHEGFGSLTNLQKLCIIE---ADSEALKELMKLRQL---RNLLKTIPP 129
             + +G   LTNL+ L +      D   L  L+KL  L    N +  I  
Sbjct: 58  -SI-QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA 105

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 8/135 (5%)

Query: 4   DLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSI--GNLLGLETLDLKNTLVRELPV 61
            + +  +        N + L  + ++  K+  +        L  L  +D+        P 
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770

Query: 62  EIRNLKRLRYLMVYQYNYTAG-FAAAKLHEGFGSLTNLQKL-----CIIEADSEALKELM 115
           +  N  +L+   +       G     +   G  +  +L +L      I + D +   +L 
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLY 830

Query: 116 KLRQLRNLLKTIPPP 130
            L    N   +I   
Sbjct: 831 ILDIADNPNISIDVT 845

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 39/143 (27%)

Query: 13  LPEGVGNLFNLHYLSVK-NTKVKIIPKSIGNLLGLETLDL-KNTLV---------RELPV 61
                 NL +L  + +     +  +P  + +L  L++L++  N  +           L  
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 62  EIRNLKRLRYLMVYQYNYTAGFAAAKLHE-----GFGSLTNLQKLC-------IIEADSE 109
           +     +++   +  YN         L E         +  L  L         +    E
Sbjct: 543 DEDTGPKIQIFYMG-YN--------NLEEFPASASLQKMVKLGLLDCVHNKVRHL----E 589

Query: 110 ALKELMKLRQL---RNLLKTIPP 129
           A    +KL  L    N ++ IP 
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPE 612

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 14/129 (10%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLG-LETLDLKNTLVRELP--VEIRNLKRL 69
           L    G    L  L +   +++ IP+        +E L   +  ++ +P     +++  +
Sbjct: 588 LEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646

Query: 70  RYLMVYQYNY-TAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEALKELMKLRQLR-- 121
             +    YN   +               N   +      I +  +E       +  +   
Sbjct: 647 GSVDF-SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 122 -NLLKTIPP 129
            NL+ +IP 
Sbjct: 706 NNLMTSIPE 714

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 18/178 (10%), Positives = 46/178 (25%), Gaps = 50/178 (28%)

Query: 1   KVLDLEDAPVDYLPEGVG------NLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKN 53
             +D     +      +          N   +++   ++ K   +       + T+ L N
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 54  --------TLVRELPVEIRNLKRLRYLMVYQYNY----TAGFAAAKLH------------ 89
                     ++      +N   L  + + ++N     +  F A  L             
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDL-RFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765

Query: 90  ----EGFGSLTNLQKL-----------CIIEADSEALKELMKLRQLR---NLLKTIPP 129
                   + + L+              I+      +     L QL+   N ++ +  
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 9/121 (7%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYL 72
             + +     L     +N ++K I K     L    +      +  +   I+ L +L+ +
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453

Query: 73  MVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLR----NLLKTIP 128
                +                  N       E +  +   L  L  +       +  +P
Sbjct: 454 YFA-NSPFTYDNI----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 129 P 129
            
Sbjct: 509 D 509

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 31/141 (21%)

Query: 13  LPEGVGNLFNLHYLSV-KNTKVKIIPKSIGNLLGLETLDL---------KNTLVRELPVE 62
                 NL +L  + V     +  +P  +  L  ++ +++         +     +   +
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 63  IRNLKRLRYLMVYQYNYTAGFAAAKLHEG-----FGSLTNLQKLCI----IEADSEALKE 113
               ++++ + +  YN         L           +  L  L      +E    A   
Sbjct: 301 APVGEKIQIIYI-GYN--------NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351

Query: 114 LMKLRQL---RNLLKTIPPPL 131
            +KL  L    N +  IP   
Sbjct: 352 EIKLASLNLAYNQITEIPANF 372

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 14/116 (12%), Positives = 33/116 (28%), Gaps = 10/116 (8%)

Query: 19  NLFNLHYLSVK-NTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQY 77
           +  +L    +  + + K I KS    L    +   +  +  +   +  L +LR   +   
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMG-N 215

Query: 78  NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLR----NLLKTIPP 129
           +        +         N +     + +      L  L  +       L  +P 
Sbjct: 216 SPFVAENICEA----WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 19/160 (11%), Positives = 44/160 (27%), Gaps = 44/160 (27%)

Query: 13  LPEGVGNLFNLHYLSVKNTK-VKIIPKSIGNLLGLETLDLKN--------TLVRELPVEI 63
           L        N+  +++ N +  K   +       L +++L            +++     
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 64  RNLKRLRYLMVYQYNY----TAGFAAAKLH----------------EGFGSLTNLQKLCI 103
           +N   L  + + ++N     +  F A  L                     + + L+   I
Sbjct: 485 KNTYLLTSIDL-RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543

Query: 104 IEADS-----------EALKELMKLRQL---RNLLKTIPP 129
                           E +     L QL    N ++ +  
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 15/138 (10%), Positives = 42/138 (30%), Gaps = 30/138 (21%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEI-RNLKRLRY 71
           +   +  +  L  L     +++    + G+ + L +L+L    + E+P       +++  
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 72  LMVYQYNYTAGFAAAKLHE-----GFGSLTNLQKL------------CIIEADSEALKEL 114
           L    +N        KL          S++ +  +               +       + 
Sbjct: 382 LSF-AHN--------KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 115 MKLRQLR---NLLKTIPP 129
           + +  +    N +   P 
Sbjct: 433 INVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 13/128 (10%)

Query: 15  EGV--GNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKN-----TLVRELPVEIRNL 66
            GV   +   +  LS++       +P +IG L  LE L L +           P  I   
Sbjct: 73  PGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132

Query: 67  KRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNL-----QKLCIIEADSEALKELMKLRQLR 121
                    + +Y   F      E F  L         +   I+  S    +  ++ QL 
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 122 NLLKTIPP 129
           N +  +  
Sbjct: 193 NNITFVSK 200

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 15/125 (12%), Positives = 31/125 (24%), Gaps = 33/125 (26%)

Query: 14  PEGVGNLFNLHYLSVKNTKVK--IIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRY 71
                    +  + +    +K   +  S+  +  L  L+     +        +  +L  
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS 357

Query: 72  LMVYQYNYTAGFAAAKLH----EGFGSLTNLQKLCIIEADSEALKELMKLRQL-RNLLKT 126
           L +  YN        ++        G    ++ L                     N LK 
Sbjct: 358 LNLA-YN--------QITEIPANFCGFTEQVENL-----------------SFAHNKLKY 391

Query: 127 IPPPL 131
           IP   
Sbjct: 392 IPNIF 396

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 9/79 (11%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSV-------KNTKVKIIPKSIGNLLGLETLDLKN 53
             +DL        P    N   L    +        N  ++  P+ I     L  L + +
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 54  TLVRELPVEIRNLKRLRYL 72
             +R++  +I     +  L
Sbjct: 576 NDIRKVNEKI--TPNISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 8/117 (6%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVKI-----IPKSIGNLLGLETLDLKNTLVRELPVEIRNLK 67
           +P+ +G L  L  L++ +   K+      PK I   +  E        +      +    
Sbjct: 97  VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK--MRMHYQKTFVDYDP 154

Query: 68  RLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL-KELMKLRQLRNL 123
           R  +  + +    +      + +         ++  +  +   + K +M+L +LR  
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQF 211

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 19/144 (13%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNTLVRE 58
           + LDL    ++ + +     L +L  L +    ++   P S   L  LE L    T +  
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 59  LPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL--------CIIEADSE 109
           L    I  L  L+ L V  +N+     + KL   F +LTNL  +         I   D +
Sbjct: 119 LESFPIGQLITLKKLNV-AHNF---IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 110 ALKEL----MKLRQLRNLLKTIPP 129
            L+E     + L    N +  I  
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQD 198

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 19/143 (13%)

Query: 1   KVLDLEDAPVDYLPEGV---GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVR 57
             LDL    + +            +L +L +      I+  +   L  L+ LD +++ ++
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 412

Query: 58  ELP--VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEA-DSE 109
            +       +L++L YL +  Y  T           F  LT+L  L        +   S 
Sbjct: 413 RVTEFSAFLSLEKLLYLDI-SYTNTKID----FDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 110 ALKELMKLRQLR---NLLKTIPP 129
                  L  L      L+ I  
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISW 490

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 25/144 (17%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNTLVREL 59
                 D  +  +P+ + +  +   + +    +K +   S  N   L+ LDL    +  +
Sbjct: 14  ITYQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 60  PVE-IRNLKRLRYLMVYQYNYTAGFAAAKLH----EGFGSLTNLQKL-----CIIEADSE 109
             +    L  L  L++   N         +       F  LT+L+ L      +   +S 
Sbjct: 72  EDKAWHGLHHLSNLIL-TGN--------PIQSFSPGSFSGLTSLENLVAVETKLASLESF 122

Query: 110 ALKELMKLRQL---RNLLKTIPPP 130
            + +L+ L++L    N + +   P
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLP 146

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 28/146 (19%), Positives = 39/146 (26%), Gaps = 26/146 (17%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLG---LETLDLKNTLVR 57
           K L L         +    L +L YL +    +        + LG   L  LDL      
Sbjct: 331 KSLTLTMNKGSISFKK-VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 58  ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHE-----GFGSLTNLQKL-----CIIEAD 107
            +      L+ L++L   Q++         L        F SL  L  L           
Sbjct: 390 IMSANFMGLEELQHLDF-QHS--------TLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 108 SEALKELMKLRQL---RNLLKTIPPP 130
                 L  L  L    N  K     
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLS 466

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 31/138 (22%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVK--NTKVKIIPKSIGNLLGLETLDLKNTLVR 57
             LD+         +G+   L +L+ L +   + K   +     N   L  LDL    + 
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 58  ELPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMK 116
           ++   +   L RL+ L +  +N                  NL  L     DS    +L  
Sbjct: 487 QISWGVFDTLHRLQLLNM-SHN------------------NLLFL-----DSSHYNQLYS 522

Query: 117 LRQL---RNLLKTIPPPL 131
           L  L    N ++T    L
Sbjct: 523 LSTLDCSFNRIETSKGIL 540

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVKI---IPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKR 68
           +P  + NL  L++L +      +   IP +I  L  L  L +    +   +P  +  +K 
Sbjct: 68  IPSSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126

Query: 69  LRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL 101
           L  L    YN  +G     L     SL NL  +
Sbjct: 127 LVTLDFS-YNALSG----TLPPSISSLPNLVGI 154

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 15/94 (15%)

Query: 13  LPEGVGNLFNLHYLSV-KNTKVKI---IPKSIGNLLGLETLDL-KNTLVRELPVEIRNLK 67
           +P    NL NL ++ + +N    +        G+    + + L KN+L  +L  ++   K
Sbjct: 190 IPPTFANL-NLAFVDLSRN---MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244

Query: 68  RLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL 101
            L  L +   N   G     L +G   L  L  L
Sbjct: 245 NLNGLDLR-NNRIYG----TLPQGLTQLKFLHSL 273

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 13  LPEGVGNLFNLHYLSV-KNTKVKIIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKRLR 70
                G+  N   + + KN+    +   +G    L  LDL  N +   LP  +  LK L 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 71  YLMVYQYN 78
            L V  +N
Sbjct: 272 SLNVS-FN 278

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 21/110 (19%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKRLR 70
           +P+ +  +  L  L      +   +P SI +L  L  +    N +   +P    +  +L 
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 71  YLMVYQYNYTAG-----FAAAKLHE--------------GFGSLTNLQKL 101
             M    N   G     FA   L                 FGS  N QK+
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 10/140 (7%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           + L+L+   +  +   V     L  L + + K+  +     +  G+  + L+N  +  + 
Sbjct: 172 EHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEALKELM 115
             +R  + L +  + + N    F    L + F     +Q +       +   +E    + 
Sbjct: 231 KALRFSQNLEHFDL-RGNG---FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 116 KLRQLRNLLKTIPPPLAADR 135
            L           P   ADR
Sbjct: 287 TLGHYGAYCCEDLPAPFADR 306

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 26/131 (19%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVKIIPKSIG-NLLGLETLDLKNTLVRELPVE-IRNLKRLR 70
           + E   N        V ++ +K    S+  +   ++ LDL    + ++    +    +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 71  YLMVYQYNYTAGFAAAKLHE--GFGSLTNLQKL-----CIIEADSEALKELMKLRQL--- 120
            L +   N         L+E     SL+ L+ L      +     + L     +  L   
Sbjct: 62  LLNL-SSN--------VLYETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAA 107

Query: 121 RNLLKTIPPPL 131
            N +  +    
Sbjct: 108 NNNISRVSCSR 118

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 19/140 (13%), Positives = 47/140 (33%), Gaps = 17/140 (12%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKS--IGNLLGLETLDLKNTLVR 57
           K + L +  +  L +   G    + YL +K  ++  +  +    +   LE L+L+   + 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 58  ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI----IEADSEALKE 113
           ++  ++    +L+ L +             +   F S   +  + +    +    +AL+ 
Sbjct: 183 DVKGQV-VFAKLKTLDLSSNKLA------FMGPEFQSAAGVTWISLRNNKLVLIEKALRF 235

Query: 114 LMKLRQL---RNLLKTIPPP 130
              L       N        
Sbjct: 236 SQNLEHFDLRGNGFHCGTLR 255

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 1   KVLDLEDAPVDYLPEGVG-NLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNTLVRE 58
           K+  + D+ +      +  + +N+  L +    +  I    +     LE L+L + ++ E
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 59  LPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEALKE 113
              ++ +L  LR L +   N         + E      +++ L      I        + 
Sbjct: 73  TL-DLESLSTLRTLDLN-NN--------YVQE-LLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 114 LMKLRQLRNLLKTIPP 129
              +    N +  +  
Sbjct: 122 KKNIYLANNKITMLRD 137

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 22/135 (16%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           K++D+++  +  LP+      +L +++  N +++ +P  + NL  L  +   N  +++LP
Sbjct: 156 KIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP 211

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHE--GFGSLTNLQKLCI----IEADSEALKEL 114
               +L+ +        N         L E     +L  L  +      ++   +    L
Sbjct: 212 DLPLSLESI-VA---GNN--------ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSL 259

Query: 115 MKLRQLRNLLKTIPP 129
             L    N L  +P 
Sbjct: 260 EALNVRDNYLTDLPE 274

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 36/152 (23%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLL---------------- 44
             L+L +  +  LPE      +L  L      +  +P+   +L                 
Sbjct: 74  HELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 45  -GLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI 103
             LE L + N  + +LP E++N   L+ + V   N         L +      +L+ +  
Sbjct: 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVD-NN--------SLKKLPDLPPSLEFIAA 180

Query: 104 IEADSEALKELMKLRQLR------NLLKTIPP 129
                E L EL  L  L       N LK +P 
Sbjct: 181 GNNQLEELPELQNLPFLTAIYADNNSLKKLPD 212

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 15/129 (11%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             L+     +  L +      +L  L+V N K+  +P     L   E L      + E+P
Sbjct: 300 YYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVP 353

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQL 120
              +NLK+L ++   +YN        +  +   S+ +L+    +    E  + L +L   
Sbjct: 354 ELPQNLKQL-HV---EYN-----PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404

Query: 121 RNLLKTIPP 129
            N L+  P 
Sbjct: 405 TNPLREFPD 413

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 24/145 (16%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           + +   +  ++ LPE + NL  L  +   N  +K +P    +L  L   D   T   +LP
Sbjct: 218 ESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLT---DLP 273

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAA------------AKLHEGFGSLTNLQKLCI----I 104
              ++L  L        N  +G +              ++        +L++L +    +
Sbjct: 274 ELPQSLTFLDVS----ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329

Query: 105 EADSEALKELMKLRQLRNLLKTIPP 129
                    L +L    N L  +P 
Sbjct: 330 IELPALPPRLERLIASFNHLAEVPE 354

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 24/132 (18%)

Query: 13  LPEGVGNLFNL-HYLSVKNTKVKIIPKSIGNLL-------------GLETLDLKNTLVRE 58
           +P    N+ +   Y +  +   +  P   G                    L+L N  +  
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85

Query: 59  LPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI-IEADSEALKELMKL 117
           LP    +L+ L        + T      +L E   SL +L      ++A S+    L  L
Sbjct: 86  LPELPPHLESLV---ASCNSLT------ELPELPQSLKSLLVDNNNLKALSDLPPLLEYL 136

Query: 118 RQLRNLLKTIPP 129
               N L+ +P 
Sbjct: 137 GVSNNQLEKLPE 148

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 23/133 (17%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           + L++ +  +  LP     L     L      +  +P+   NL   + L ++   +RE P
Sbjct: 320 EELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQNL---KQLHVEYNPLREFP 373

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI----IEADSEALKELMK 116
               +++ LR               + L E      NL++L +    +    +  + +  
Sbjct: 374 DIPESVEDLRMN-------------SHLAEVPELPQNLKQLHVETNPLREFPDIPESVED 420

Query: 117 LRQLRNLLKTIPP 129
           LR     +     
Sbjct: 421 LRMNSERVVDPYE 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 15/122 (12%)

Query: 14  PEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLM 73
            + + NL  L  L + + KV  I   +  L  LE+L   N  + ++   +  L  L  L 
Sbjct: 170 LKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDIT-PLGILTNLDELS 227

Query: 74  VYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIE---ADSEALKELMKLRQL---RNLLKTI 127
           +   N               SLTNL  L +     ++   L  L KL +L    N +  I
Sbjct: 228 L-NGNQLKDI------GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI 280

Query: 128 PP 129
            P
Sbjct: 281 SP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 15  EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMV 74
             +G L NL  LS+   ++K I  ++ +L  L  LDL N  +  L   +  L +L  L +
Sbjct: 215 TPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKL 272

Query: 75  YQYNYTAGFAAAKLHEGFGSLTNLQKLCI----IEADSEALKELMKLRQL---RNLLKTI 127
              N  +             LT L  L +    +E D   +  L  L  L    N +  I
Sbjct: 273 G-ANQISNI------SPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDI 324

Query: 128 PP 129
            P
Sbjct: 325 SP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 16/121 (13%)

Query: 15  EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMV 74
             + NL NL  L++ N ++  I   + NL  L  L+L +  + ++   +  L  L+ L  
Sbjct: 106 TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQL-- 161

Query: 75  YQYNYTAGFAAAKLHEGFGSLTNLQKLCIIE---ADSEALKELMKLRQL---RNLLKTIP 128
              N           +   +LT L++L I     +D   L +L  L  L    N +  I 
Sbjct: 162 SFGNQVTDL------KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 215

Query: 129 P 129
           P
Sbjct: 216 P 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             L+L +  ++ +   + NL NL YL++    +  I   + +L  L+ L   N  V ++ 
Sbjct: 290 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVS 347

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEALKELM 115
             + NL  + +L    +N  +            +LT + +L         A       + 
Sbjct: 348 -SLANLTNINWLSAG-HNQISDL------TPLANLTRITQLGLNDQAWTNAPVNYKANVS 399

Query: 116 KLRQLRNLLKTIPPP 130
               ++N+   +  P
Sbjct: 400 IPNTVKNVTGALIAP 414

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 17/118 (14%)

Query: 18  GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQY 77
           G L +       +T +  I  +   L       L  T V +      +L ++  L   + 
Sbjct: 1   GPLGSATITQ--DTPINQIF-TDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRL 56

Query: 78  NYTAGFAAAKLHEGFGSLTNLQKLCIIE---ADSEALKELMKLRQL---RNLLKTIPP 129
                     + +G   L NL ++        D   LK L KL  +    N +  I P
Sbjct: 57  GIK------SI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 107

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 17/137 (12%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           + LD     ++ +   V     L  L +++  +      + N  GL  +DL    + ++ 
Sbjct: 208 EELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIM 264

Query: 61  VEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI-------IEADSEALK 112
                 ++RL  L +   N         L+     +  L+ L +       +E +     
Sbjct: 265 YHPFVKMQRLERLYI-SNNRLV-----ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318

Query: 113 ELMKLRQLRNLLKTIPP 129
            L  L    N + T+  
Sbjct: 319 RLENLYLDHNSIVTLKL 335

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 16/138 (11%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVRE 58
           + L +    + YLP  V  N+  L  L ++   +  +P+ I  N   L TL + N  +  
Sbjct: 96  QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155

Query: 59  LPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHE-GFGSLTNLQKLCIIEADSEALKELMK 116
           +  +  +    L+ L +   N        +L       + +L    +       L   + 
Sbjct: 156 IEDDTFQATTSLQNLQL-SSN--------RLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 206

Query: 117 LRQL---RNLLKTIPPPL 131
           + +L    N +  +  P+
Sbjct: 207 VEELDASHNSINVVRGPV 224

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 18/143 (12%), Positives = 46/143 (32%), Gaps = 29/143 (20%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           + L L    + ++      + +L + +V    +  +       + +E LD  +  +  + 
Sbjct: 168 QNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVR 221

Query: 61  VEI-RNLKRLRYLMVYQYNYTAGFAAAKLHE--GFGSLTNLQKLC-----IIEADSEALK 112
             +   L  L  L   Q+N         L +     +   L ++      + +       
Sbjct: 222 GPVNVELTIL-KL---QHN--------NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 269

Query: 113 ELMKLRQLR---NLLKTIPPPLA 132
           ++ +L +L    N L  +     
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQ 292

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 16/98 (16%)

Query: 42  NLLGLETLDLKNTLVRELPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQ 99
            L   + +  KN+ +R+LP  +  + +++  L +            ++    F     +Q
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL-NDL-----QIEEIDTYAFAYAHTIQ 96

Query: 100 KLC-----IIEADSEALKELMKLRQL---RNLLKTIPP 129
           KL      I        + +  L  L   RN L ++P 
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDL-KNTLVRELPVEI-RNLKRLR 70
             +      +L YL +    V  +  +   L  LE LD   + L +     +  +L+ L 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 71  YLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEA-DSEALKELMKLRQL---R 121
           YL +  + +T        +  F  L++L+ L        E    +   EL  L  L   +
Sbjct: 425 YLDI-SHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 122 NLLKTIPP 129
             L+ + P
Sbjct: 480 CQLEQLSP 487

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 30/140 (21%), Positives = 46/140 (32%), Gaps = 15/140 (10%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVK-IIPKSI-GNLLGLETLDL-KNTLVR 57
           K LDL    V  +      L  L +L  +++ +K +   S+  +L  L  LD+       
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 58  ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEALK 112
                   L  L  L     N    F    L + F  L NL  L      + +    A  
Sbjct: 436 AFNGIFNGLSSLEVL-KMAGNS---FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 113 ELMKLRQL---RNLLKTIPP 129
            L  L+ L    N   ++  
Sbjct: 492 SLSSLQVLNMSHNNFFSLDT 511

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 38/168 (22%), Positives = 57/168 (33%), Gaps = 43/168 (25%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDL------- 51
           K LDL   P+ +L      +   L  L +   ++  I   +  +L  L TL L       
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 52  ------------------KNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFG 93
                             +  L       I +LK L+ L V  +N      + KL E F 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV-AHNL---IQSFKLPEYFS 146

Query: 94  SLTNLQKL-----CIIEADSEALKELMKLRQL-------RNLLKTIPP 129
           +LTNL+ L      I       L+ L ++  L        N +  I P
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 16/124 (12%)

Query: 18  GNLFNLHYLSV---KNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMV 74
            +L +L +L +     +      +S      L+ LDL    V  +      L++L +L  
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 75  YQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEALKELMKLRQLR----NLLK 125
            Q++             F SL NL  L         A +     L  L  L+    +  +
Sbjct: 404 -QHSN---LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 126 TIPP 129
              P
Sbjct: 460 NFLP 463

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 13  LPEGVGNLFNLHYLSVKNTK-VKIIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKRLR 70
           LP+    L NL +L +   +  ++ P +  +L  L+ L++  N          + L  L+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 71  YL 72
            L
Sbjct: 522 VL 523

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 58/434 (13%), Positives = 125/434 (28%), Gaps = 140/434 (32%)

Query: 21  FNLHYLSVKN-TKVKIIPKSIGNLLGLETLDLKNTL--VRELPVEIRNLK-RLRYLMVYQ 76
           F + +L++KN    + + + +  LL     +  +       + + I +++  LR L+  +
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 77  YNYTAGF------AAAKLHEGFGSLTNLQ-KLCIIEADSEALKELMKLRQLRNLLKTIPP 129
             Y            AK    F    NL  K+ +     +    L         L     
Sbjct: 242 -PYENCLLVLLNVQNAKAWNAF----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 130 PLAADRSTKK-ARFRSHEVDADSP------SPL-------SFKDALVHPEQYRSSEDAEM 175
            L  D       ++       D P      +P        S +D L   + ++     ++
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 176 EEEWD-----LEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLC 230
               +     LEP +             + K      + P   S        +I   +L 
Sbjct: 356 TTIIESSLNVLEPAE-------------YRKMFDRLSVFP--PSA-------HIPTILLS 393

Query: 231 NRLKVMW------------HQIHDFSVIDLENN---------YFLIRLKSPEDAV----- 264
               ++W            +++H +S+++ +           Y  +++K   +       
Sbjct: 394 ----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 265 ---YALTEG--------PWV---IF---GHYLTVQPWTPQFDSTTT---DLDSAIVW--- 301
              Y + +         P++    +   GH+L       +         D      +   
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR----FLEQ 505

Query: 302 -IRLPGMA-------------FHLYDKRIL-------RKIGQLVGNVIKIDYHTALRERG 340
            IR    A                Y   I        R +  ++  + KI+ +       
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI---CS 562

Query: 341 KFARIAVRISLSQP 354
           K+  + +RI+L   
Sbjct: 563 KYTDL-LRIALMAE 575

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 18/141 (12%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSV-KNTKVKIIPKSIGNLLGLETLDLKNTLVRE 58
            VL L    ++ + +     L+ L  L +     +  +  +    L L +L + +  +  
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238

Query: 59  LPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL-----CIIEADSEAL 111
           +P   +R+L  LR+L +  YN       + +       L  LQ++      +   +  A 
Sbjct: 239 VPYLAVRHLVYLRFLNLS-YN-----PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 112 KELMKLRQL---RNLLKTIPP 129
           + L  LR L    N L T+  
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 18/141 (12%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRE 58
           ++LDL    +  L +    +  +L  L +    V  + P +  NL  L TL L++  ++ 
Sbjct: 35  RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94

Query: 59  LPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL-----CIIEADSEAL 111
           +P+ +   L  L  L +   N         L +  F  L NL+ L      ++     A 
Sbjct: 95  IPLGVFTGLSNLTKLDI-SEN-----KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 112 KELMKLRQL---RNLLKTIPP 129
             L  L QL   +  L +IP 
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPT 169

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 18/141 (12%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRE 58
             LD+ +  +  L + +  +L+NL  L V +  +  I  ++   L  LE L L+   +  
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166

Query: 59  LPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL-----CIIEADSEAL 111
           +P E   +L  L  L + ++          + +  F  L  L+ L       ++  +   
Sbjct: 167 IPTEALSHLHGLIVLRL-RHLNI-----NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 112 KELMKLRQLR---NLLKTIPP 129
              + L  L      L  +P 
Sbjct: 221 LYGLNLTSLSITHCNLTAVPY 241

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 1   KVLDLEDAPVDYLPEGVG-NLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNTLVRE 58
           K+  + D+ +      +  + +N+  L +    +  I    +     LE L+L + ++ E
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 59  LPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEALKE 113
              ++ +L  LR L +   N         + E      +++ L      I        + 
Sbjct: 73  TL-DLESLSTLRTLDL-NNN--------YVQE-LLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 114 LMKLRQLRNLLKTIPP 129
              +    N +  +  
Sbjct: 122 KKNIYLANNKITMLRD 137

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 11/137 (8%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           + L+L+   +  +   V     L  L + + K+  +     +  G+  + L+N  +  + 
Sbjct: 172 EHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL------CIIEADSEALKEL 114
             +R  + L +  + + N    F    L + F     +Q +       +   + E     
Sbjct: 231 KALRFSQNLEHFDL-RGNG---FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 115 MKLRQLRNLLKTIPPPL 131
                     + +P P 
Sbjct: 287 TLGHYGAYCCEDLPAPF 303

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 16/124 (12%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVKIIPKSIG-NLLGLETLDL-KNTLVRELPVEIRNLKRLR 70
           + E   N        V ++ +K    S+  +   ++ LDL  N L +    ++    +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 71  YLMVYQYNYTAGFAAAKLHE--GFGSLTNLQKLCIIEADSEALKELMKLRQL---RNLLK 125
            L +   N         L+E     SL+ L+ L +     + L     +  L    N + 
Sbjct: 62  LLNL-SSN--------VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112

Query: 126 TIPP 129
            +  
Sbjct: 113 RVSC 116

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 23/144 (15%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVREL 59
           + L   +  +  +    G       + + N K+ ++     G    ++ LDLK   +  +
Sbjct: 102 ETLHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 60  PVE--IRNLKRLRYLMVYQYNYTAGFAAAKLHE--GFGSLTNLQKLCI----IEADSEAL 111
                  +   L +L + QYN         +++  G      L+ L +    +       
Sbjct: 160 NFAELAASSDTLEHLNL-QYN--------FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF 210

Query: 112 KELMKLRQL---RNLLKTIPPPLA 132
           +    +  +    N L  I   L 
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALR 234

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 15/95 (15%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKRLR 70
           +P+ +  +  L  L +    +   IP  + N   L  + L  N L  E+P  I  L+ L 
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 71  YLMVYQYNYTAGFAAAKLH----EGFGSLTNLQKL 101
            L +   N                  G   +L  L
Sbjct: 518 ILKLSN-N--------SFSGNIPAELGDCRSLIWL 543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 17/97 (17%)

Query: 13  LPEGVGN--LFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKR 68
           +   +       L  L ++N      IP ++ N   L +L L  N L   +P  + +L +
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443

Query: 69  LRYLMVYQYNYTAGFAAAKLH----EGFGSLTNLQKL 101
           LR L +   N         L     +    +  L+ L
Sbjct: 444 LRDLKL-WLN--------MLEGEIPQELMYVKTLETL 471

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKRLR 70
           +P  +G+   L +L +   K+     ++I     L+ L++  N  V  +P     LK L+
Sbjct: 216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272

Query: 71  YLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL 101
           YL +   N   G     L    G+   L  L
Sbjct: 273 YLSLA-ENKFTGEIPDFL---SGACDTLTGL 299

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 14  PEGVGNLFNLHYLSV-KNTKVKI---IPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKR 68
           P+ +G++  L  L++  N    I   IP  +G+L GL  LDL  N L   +P  +  L  
Sbjct: 649 PKEIGSMPYLFILNLGHN---DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 69  LRYL 72
           L  +
Sbjct: 706 LTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 13  LPEGVGNLFNLHYLSV-KNTKVKI---IPKSIGNLLGLETLDL-KNTLVRELPVEIRNLK 67
                 N  ++ +L +  N    +   IPK IG++  L  L+L  N +   +P E+ +L+
Sbjct: 624 TSPTFDNNGSMMFLDMSYN---MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680

Query: 68  RLRYL 72
            L  L
Sbjct: 681 GLNIL 685

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 15/108 (13%)

Query: 36  IPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGS 94
           +  S+ +L GLE+L L  + +   +    +    L  L + + + +            GS
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLT---SLGS 124

Query: 95  LTNLQKLCI------IEADSEALKELMKLRQLR----NLLKTIPPPLA 132
            + L+ L +               +L  L  L     ++         
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 14  PEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDL-KNTLVRELPVE-IRNLKRLR 70
               G    L  L +        +P   G+   LE+L L  N    ELP++ +  ++ L+
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346

Query: 71  YL 72
            L
Sbjct: 347 VL 348

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 5/64 (7%), Positives = 14/64 (21%), Gaps = 4/64 (6%)

Query: 13  LPEGVGNLFNLHYLSVKNTKVK---IIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKR 68
               + N             ++   I  + +  L      ++              N   
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 69  LRYL 72
           + +L
Sbjct: 634 MMFL 637

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 18  GNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKRLRYLMVY 75
                L +L++   K+   +   +   + LE LD+  N     +P  + +   L++L + 
Sbjct: 175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDIS 231

Query: 76  QYNYTAGFAAAKLHEGFGSLTNLQKL 101
             N  +G           + T L+ L
Sbjct: 232 -GNKLSG----DFSRAISTCTELKLL 252

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 13  LPEGVGNLFNLHYLSVKNTKV--KIIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLK-R 68
           +P   G+   L  L++ +     ++   ++  + GL+ LDL  N    ELP  + NL   
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 69  LRYL 72
           L  L
Sbjct: 370 LLTL 373

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 21/133 (15%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             L L    +  LP+ +     +  L +    +  +P+   +L   E LD  +  +  LP
Sbjct: 62  SELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPASL---EYLDACDNRLSTLP 116

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI----IEADSEALKELMK 116
               +LK L                 +L         L+ +      +    E    L  
Sbjct: 117 ELPASLKHLD------------VDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEV 164

Query: 117 LRQLRNLLKTIPP 129
           L    N L  +P 
Sbjct: 165 LSVRNNQLTFLPE 177

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLET----LDLKNTLV 56
           +VL + +  + +LPE      +L  L V    ++ +P         E        +   +
Sbjct: 163 EVLSVRNNQLTFLPEL---PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 57  RELPVEIRNLKRLRYLMV 74
             +P  I +L     +++
Sbjct: 220 THIPENILSLDPTCTIIL 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 34/124 (27%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLL---------------- 44
           K LD+++  +  LPE    L    Y++  N ++ ++P+   +L                 
Sbjct: 123 KHLDVDNNQLTMLPELPALL---EYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELP 179

Query: 45  -GLETLDLKNTLVRELPVEIRNLKRLRYLMVY---QYNYTAGFAAAKLH---EGFGSLTN 97
             LE LD+   L+  LP             ++   + N        ++    E   SL  
Sbjct: 180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN--------RITHIPENILSLDP 231

Query: 98  LQKL 101
              +
Sbjct: 232 TCTI 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 18/116 (15%)

Query: 20  LFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY 79
           +     L +    +  +P ++     +  L++    +  LP    +L+ L        N 
Sbjct: 58  INQFSELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPASLEYLDAC----DN- 110

Query: 80  TAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL-KELMKLRQLR---NLLKTIPPPL 131
                  +L        +L+ L +       L +    L  +    N L  +P   
Sbjct: 111 -------RLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELP 159

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 21/141 (14%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVREL 59
            +L L +  +             L  L++   ++  +    G L  L TLDL +  ++ L
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSL 92

Query: 60  PVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKLCI-------IEADSEAL 111
           P+  + L  L  L V     T       L  G    L  LQ+L +       +      L
Sbjct: 93  PLLGQTLPALTVLDVSFNRLT------SLPLGALRGLGELQELYLKGNELKTLPPG--LL 144

Query: 112 KELMKLRQL---RNLLKTIPP 129
               KL +L    N L  +P 
Sbjct: 145 TPTPKLEKLSLANNNLTELPA 165

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVREL 59
             +DL    ++ +       +  L  L + N ++  +      +  L+ LDL +  +  +
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 316

Query: 60  PVEIRNLKRLRYL 72
                   RL  L
Sbjct: 317 ERNQPQFDRLENL 329

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 17/137 (12%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           + LD     ++ +   V     L  L +++  +      + N  GL  +DL    + ++ 
Sbjct: 214 EELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIM 270

Query: 61  VEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI-------IEADSEALK 112
                 ++RL  L +   N         L+     +  L+ L +       +E +     
Sbjct: 271 YHPFVKMQRLERLYI-SNNRLV-----ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324

Query: 113 ELMKLRQLRNLLKTIPP 129
            L  L    N + T+  
Sbjct: 325 RLENLYLDHNSIVTLKL 341

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 15/141 (10%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVRE 58
           ++L+L D  ++ +          +  L +    ++ +P  +  N+  L  L L+   +  
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 59  LPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL-----CIIEADSEAL 111
           LP  I  N  +L  L +   N        ++ +  F + T+LQ L      +   D   +
Sbjct: 138 LPRGIFHNTPKLTTLSM-SNN-----NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 191

Query: 112 KELMKLRQLRNLLKTIPPPLA 132
             L       NLL T+  P+A
Sbjct: 192 PSLFHANVSYNLLSTLAIPIA 212

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 16/98 (16%)

Query: 42  NLLGLETLDLKNTLVRELPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQ 99
            L   + +  KN+ +R+LP  +  + +++  L +            ++    F     +Q
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL-NDL-----QIEEIDTYAFAYAHTIQ 102

Query: 100 KLC-----IIEADSEALKELMKLRQL---RNLLKTIPP 129
           KL      I        + +  L  L   RN L ++P 
Sbjct: 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 140

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 21/144 (14%)

Query: 1   KVLDLEDAPVDYLPEGVG---NLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVR 57
             L L    + +            +L YL +    V  +  +   L  LE LD +++ ++
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114

Query: 58  ELPVE--IRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL------CIIEADS 108
           ++       +L+ L YL +  + +T          G F  L++L+ L             
Sbjct: 115 QMSEFSVFLSLRNLIYLDI-SHTHT-----RVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 109 EALKELMKLRQL---RNLLKTIPP 129
           +   EL  L  L   +  L+ + P
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 21/142 (14%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVREL 59
             +      +  +P G+    +   L +++ K++ +P  +   L  L  L L +  +   
Sbjct: 10  TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 60  PVEI---RNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL----CIIEA--DSEA 110
                       L+YL +             +   F  L  L+ L      ++   +   
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVIT------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 111 LKELMKLRQL---RNLLKTIPP 129
              L  L  L       +    
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFN 143

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 22/133 (16%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             L + D  +  LP        L  L V   ++  +P     LL L       T    LP
Sbjct: 64  TTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT---HLP 117

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI----IEADSEALKELMK 116
                L +L ++     N        +L         LQ+L +    + +      EL K
Sbjct: 118 ALPSGLCKL-WI---FGN--------QLTSLPVLPPGLQELSVSDNQLASLPALPSELCK 165

Query: 117 LRQLRNLLKTIPP 129
           L    N L ++P 
Sbjct: 166 LWAYNNQLTSLPM 178

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 36/150 (24%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLL---------------- 44
             L +    +  LP        L  LSV + ++  +P     L                 
Sbjct: 124 CKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP 180

Query: 45  -GLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI 103
            GL+ L + +  +  LP     L +L        N        +L       + L++L +
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAY----NN--------RLTSLPALPSGLKELIV 228

Query: 104 ----IEADSEALKELMKLRQLRNLLKTIPP 129
               + +      EL +L    N L ++P 
Sbjct: 229 SGNRLTSLPVLPSELKELMVSGNRLTSLPM 258

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 36/153 (23%)

Query: 1   KVLDLEDAPVDYLPEGVGNL-----------------FNLHYLSVKNTKVKIIPKSIGNL 43
           + L + D  +  LP     L                   L  LSV + ++  +P     L
Sbjct: 144 QELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSEL 203

Query: 44  LGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI 103
             L   + + T    LP     LK L  +     N        +L       + L++L +
Sbjct: 204 YKLWAYNNRLT---SLPALPSGLKEL-IV---SGN--------RLTSLPVLPSELKELMV 248

Query: 104 ----IEADSEALKELMKLRQLRNLLKTIPPPLA 132
               + +       L+ L   RN L  +P  L 
Sbjct: 249 SGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLI 281

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 12/109 (11%)

Query: 22  NLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTA 81
               L+V  + +  +P  +     + TL + +  +  LP     L+ L  +     N   
Sbjct: 41  GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTL-EV---SGNQ-- 92

Query: 82  GFAAAKLHEGFGSLTNLQKLCIIEAD-SEALKELMKLRQLRNLLKTIPP 129
                 L      L  L                L KL    N L ++P 
Sbjct: 93  ---LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 138

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 4/146 (2%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           K L +    +  LP     L     LSV   ++  +P+S+ +L    T++L+   + E  
Sbjct: 244 KELMVSGNRLTSLPMLPSGL---LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQL 120
           ++                     A A       +L       ++ A         +    
Sbjct: 301 LQALREITSAPGYSGPIIRF-DMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

Query: 121 RNLLKTIPPPLAADRSTKKARFRSHE 146
                     L  DR ++   F    
Sbjct: 360 GQEDNADAFSLFLDRLSETENFIKDA 385

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 19/142 (13%)

Query: 1   KVLDLED-APVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVR 57
           + LDL D A +  +       L  LH L +    ++ +   +   L  L+ L L++  ++
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 58  ELPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKLC-----IIEADSEA 110
            LP +  R+L  L +L ++    ++      + E  F  L +L +L      +      A
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISS------VPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 111 LKELMKLRQLR---NLLKTIPP 129
            ++L +L  L    N L  +P 
Sbjct: 197 FRDLGRLMTLYLFANNLSALPT 218

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVRE 58
           K LDL    + Y+  G      NL  L +K++++  I      +L  LE LDL +  +  
Sbjct: 29  KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88

Query: 59  LPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL------CIIEADSEAL 111
           L       L  L+YL +   N    +    +   F +LTNLQ L         E      
Sbjct: 89  LSSSWFGPLSSLKYLNLM-GNP---YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 112 KELMKLRQL---RNLLKTIPP 129
             L  L +L      L+    
Sbjct: 145 AGLTSLNELEIKALSLRNYQS 165

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 28/148 (18%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSIG-NLLGLETLDLKN----T 54
           + L +    + Y    V   L  +  ++V+N+KV ++P S   +L  LE LDL       
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 55  LVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHE------GFGSLTNLQKL----CII 104
              +          L+ L++   N         L           +L NL  L       
Sbjct: 349 EYLKNSACKGAWPSLQTLVL-SQN--------HLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 105 EADSEALKELMKLRQLR---NLLKTIPP 129
               ++ +   K+R L      ++ +  
Sbjct: 400 HPMPDSCQWPEKMRFLNLSSTGIRVVKT 427

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 19/144 (13%)

Query: 1   KVLDLEDAPVDYLPEGVG-NLFNLHYLSVKN----TKVKIIPKSIGNLLGLETLDLKNTL 55
           K + +E++ V  +P     +L +L +L +       +        G    L+TL L    
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 56  VRELPVE---IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLC-----IIEAD 107
           +R +      +  LK L  L     N         + +       ++ L      I    
Sbjct: 373 LRSMQKTGEILLTLKNLTSL-DISRNTF-----HPMPDSCQWPEKMRFLNLSSTGIRVVK 426

Query: 108 SEALKELMKLRQLRNLLKTIPPPL 131
           +   + L  L    N L +    L
Sbjct: 427 TCIPQTLEVLDVSNNNLDSFSLFL 450

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 17/120 (14%)

Query: 18  GNLFNLHYLSVKNTKVKIIPKSIG---NLLGLETLDLKNTLVRELPVEIRNLKRLRYLMV 74
           G   +L  L +    ++ + K+      L  L +LD+       +P   +  +++R+L +
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417

Query: 75  YQYNYTAGFAAAKLHE-GFGSLTNLQKL----CIIEADSEALKELMKLRQLRNLLKTIPP 129
                        +          L+ L      +++ S  L  L +L   RN LKT+P 
Sbjct: 418 -SST--------GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD 468

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 16/141 (11%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKN---TKVKIIPKSIGNLLGLETLDLKNTLVR 57
           K L             V +L +L +L +     +      +S      L+ LDL    V 
Sbjct: 328 KRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 58  ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI----IEA-DSEALK 112
            +      L++L +L   Q++     +   +   F SL NL  L I         +    
Sbjct: 387 TMSSNFLGLEQLEHLDF-QHSNLKQMSEFSV---FLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 113 ELMKLRQL---RNLLKTIPPP 130
            L  L  L    N  +    P
Sbjct: 443 GLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 17/141 (12%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTLVRE 58
           K LDL   P+ +L      +   L  L +   ++  I   +  +L  L TL L    ++ 
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 59  LPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIE------ADSEAL 111
           L +     L  L+ L+       A       +   G L  L++L +           E  
Sbjct: 91  LALGAFSGLSSLQKLVAV-ETNLASLE----NFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 112 KELMKLRQL---RNLLKTIPP 129
             L  L  L    N +++I  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYC 166

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 33/145 (22%), Positives = 51/145 (35%), Gaps = 22/145 (15%)

Query: 1   KVLDLEDAPVDYLPEGV--GNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVR 57
            +LDL    +  L        L NLH L + +  +  I       +  L  LDL +  + 
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 58  ELPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL--------CIIE-- 105
            L   +  +L+ L  L++Y  +         +    F  +  LQKL              
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVV------VDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 106 -ADSEALKELMKLRQLRNLLKTIPP 129
             D   L +LM L    N LK +P 
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPL 180

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%)

Query: 15  EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMV 74
             + NL  +  L +    +K +  +I  L  ++TLDL +T + ++   +  L  L+ L +
Sbjct: 79  APLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYL 136

Query: 75  YQYNYTAGFAAAKLH--EGFGSLTNLQKLCI----IEADSEALKELMKLRQLR---NLLK 125
              N        ++        LTNLQ L I    +  D   L  L KL  L+   N + 
Sbjct: 137 D-LN--------QITNISPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKIS 186

Query: 126 TIPP 129
            I P
Sbjct: 187 DISP 190

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 15  EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMV 74
             +  L NL YLS+ N +V  +   + NL  L TL   +  + ++   + +L  L  + +
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHL 202

Query: 75  YQYNYTAGFAAAKLHEGFGSLTNLQKLC-----IIEADSEALKELMKLRQLRNLLKTIPP 129
            + N  +            + +NL  +      I          L+    ++        
Sbjct: 203 -KNNQISDV------SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

Query: 130 PL 131
           P 
Sbjct: 256 PA 257

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 15  EGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYL 72
             +  L NL  L +    V      ++  L  L  LD+ ++   +  +  I  L ++  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 73  MVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIE---ADSEALKELMKLRQL 120
            +                   +L  L+ L I      D   +++  KL QL
Sbjct: 142 DLSYNGAITDI------MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQL 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 15/123 (12%)

Query: 18  GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQY 77
             + +L Y+++ N  V  +   I     ++ L + N         I  L  L  L +   
Sbjct: 41  AQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGK 98

Query: 78  NYTAGFAAAKLHEGFGSLTNLQKLC-----IIEADSEALKELMKLRQL---RNLLKTIPP 129
           + T+             LT+L  L        ++    +  L K+  +    N   T   
Sbjct: 99  DVTSDKI-----PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 130 PLA 132
           PL 
Sbjct: 154 PLK 156

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 1   KVLDLEDAPV-DYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDL-KNTLVR 57
           + L +    V       +  L +L  L + ++         I  L  + ++DL  N  + 
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 58  ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL 101
           ++   ++ L  L+ L + Q++    +       G      L +L
Sbjct: 151 DIM-PLKTLPELKSLNI-QFDGVHDY------RGIEDFPKLNQL 186

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 19/139 (13%)

Query: 3   LDLEDAPVDYLPEGV-GNLFNLH--YLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVREL 59
           L L + P++ +P      + +L    L        I   +   L  L+ L+L    ++++
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211

Query: 60  PVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL-----CIIEADSEALKE 113
           P  +  L  L  L +   N        ++  G F  L++L+KL      +   +  A   
Sbjct: 212 P-NLTPLVGLEELEMS-GN-----HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

Query: 114 LMKLRQLR---NLLKTIPP 129
           L  L +L    N L ++P 
Sbjct: 265 LASLVELNLAHNNLSSLPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 18/120 (15%)

Query: 22  NLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVRELPVEI-RNLKRLRYLMVYQYNY 79
           N  YL++    +++I      +L  LE L L    +R++ V     L  L  L ++  N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF-DN- 133

Query: 80  TAGFAAAKLHEG-FGSLTNLQKLC-----IIEADSEALKELMKLRQLR----NLLKTIPP 129
                   +  G F  L+ L++L      I    S A   +  L +L       L+ I  
Sbjct: 134 ----WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVREL 59
           K L+L    +  +P     L  L  L +       I   S   L  L+ L + N+ V  +
Sbjct: 199 KYLNLGMCNIKDMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 60  PVE-IRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL 101
                  L  L  L +   N ++      L    F  L  L +L
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSS------LPHDLFTPLRYLVEL 295

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLH--YLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVR 57
           K L L + P++ +P      + +L    L        I   +   L  L  L+L    +R
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198

Query: 58  ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL-----CIIEADSEAL 111
           E+P  +  L +L  L +   N       + +  G F  L +LQKL      I   +  A 
Sbjct: 199 EIP-NLTPLIKLDELDLS-GN-----HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 112 KELMKLRQLR---NLLKTIPP 129
             L  L ++    N L  +P 
Sbjct: 252 DNLQSLVEINLAHNNLTLLPH 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 18/120 (15%)

Query: 22  NLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVRELPVEI-RNLKRLRYLMVYQYNY 79
           N   L++   +++II  +   +L  LE L L    +R + +     L  L  L ++    
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 80  TAGFAAAKLHEG-FGSLTNLQKLC-----IIEADSEALKELMKLRQLR----NLLKTIPP 129
           T       +  G F  L+ L++L      I    S A   +  LR+L       L  I  
Sbjct: 125 TT------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 14/140 (10%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVRE 58
           + L L    ++ + E    +L +L +L +    +  +  S    L  L  L+L     + 
Sbjct: 79  QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 59  LPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL-----CIIEADSEALK 112
           L  E      L  L + +      F   K+    F  LT L++L      +   + ++LK
Sbjct: 139 LG-ETSLFSHLTKLQILRVGNMDTFT--KIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 113 ELMKLRQLR---NLLKTIPP 129
            +  +  L         +  
Sbjct: 196 SIQNVSHLILHMKQHILLLE 215

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 13/110 (11%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVREL 59
             L L    +  +  G   N  +L  L + N K+  +P  + +   ++ + L N  +  +
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278

Query: 60  PVE-------IRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL 101
                              + +   N        ++    F  +     +
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSL-FSNP---VQYWEIQPSTFRCVYVRAAV 324

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 21/145 (14%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKN---TKVKIIPKSIGNLLGLETLDLKNTLV 56
           + L + +  +  + + V   L  +  + +         I   +   +  L  + + +T +
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 57  RELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL-----CIIEADSEA 110
             +P  +     L  L +     T      K+       L NL KL      I   D+ +
Sbjct: 184 TTIPQGL--PPSLTELHLDGNKIT------KVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 111 LKELMKLRQL---RNLLKTIPPPLA 132
           L     LR+L    N L  +P  LA
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLA 260

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 23/145 (15%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRE 58
            +LDL++  +  + +G   NL NLH L + N K+  I P +   L+ LE L L    ++E
Sbjct: 55  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114

Query: 59  LPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL-----CIIEA--DSE 109
           LP ++ + L+ L  +     N        K+ +  F  L  +  +      +  +  ++ 
Sbjct: 115 LPEKMPKTLQEL-RV---HENE-----ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 110 ALKELMKLRQLR---NLLKTIPPPL 131
           A + + KL  +R     + TIP  L
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGL 190

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 26/133 (19%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVRE 58
           K  DL  + +  L + V  +  +L  L++   ++  I  +    L  L  L+L    +  
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337

Query: 59  LPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKLCIIEADSEALKELMK 116
           +   +  NL +L  L +   +  A      L +  F  L NL++L               
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRA------LGDQSFLGLPNLKEL--------------A 377

Query: 117 LRQLRNLLKTIPP 129
           L    N LK++P 
Sbjct: 378 LDT--NQLKSVPD 388

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 20/137 (14%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
              +L+   V         L ++  +   N+ +K + + I  L  +  L L    + ++ 
Sbjct: 27  IKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIK 84

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLH--EGFGSLTNLQKLCIIE---ADSEALKELM 115
             + NLK L +L +   N        K+        L  L+ L +     +D   L  L 
Sbjct: 85  -PLANLKNLGWLFLD-EN--------KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 116 KLRQL---RNLLKTIPP 129
           +L  L    N +  I  
Sbjct: 135 QLESLYLGNNKITDITV 151

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 23/144 (15%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVRE 58
           K LDL   P+ +L      +   L  L +   +++ I      +L  L TL L    ++ 
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 59  LPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL--------CIIEADS 108
           L +     L  L+ L+  + N         L     G L  L++L             + 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLA------SLENFPIGHLKTLKELNVAHNLIQSFKLPE- 143

Query: 109 EALKELMKLRQL---RNLLKTIPP 129
                L  L  L    N +++I  
Sbjct: 144 -YFSNLTNLEHLDLSSNKIQSIYC 166

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 7e-05
 Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 15  EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMV 74
             +  L  + +L + + +++ +P ++  L  LE L   +  +  +   + NL RL+ L++
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515

Query: 75  YQYNYTAGFAAAKLHEGFGSLTNLQKLCI----IEADSEALKELMK-LRQLRNLL 124
              N     AA    +   S   L  L +    +  +    + L + L  + ++L
Sbjct: 516 -CNNRLQQSAAI---QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 8e-05
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 15  EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMV 74
             + +L  L  LS+++  +  I   + +L  LE+L L N  + ++ V +  L +L  L +
Sbjct: 103 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSL 160

Query: 75  YQYNYTAGFAAAKLH--EGFGSLTNLQKLCIIE---ADSEALKELMKLRQL 120
            + N        ++        LT LQ L + +   +D  AL  L  L  L
Sbjct: 161 -EDN--------QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 202

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.5 bits (94), Expect = 9e-04
 Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 26/116 (22%)

Query: 15  EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMV 74
             +  L  L  LS+++ ++  I   +  L  L+ L L    + +L   +  LK L  L  
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVL-- 202

Query: 75  YQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPP 130
                                  L     +         L+    ++N   ++  P
Sbjct: 203 ----------------------ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 21/151 (13%)

Query: 1   KVLDLED---APVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNL-----LGLETLDLK 52
           + L LE+         P       +L+ L+++N         +  L      GL+ L + 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 53  NTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL--------CI 103
                    E +R    L  L +   N   G               LQ L          
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDL-SDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 104 IEADSEALKELMKLRQL---RNLLKTIPPPL 131
               S      ++L+ L    N L+      
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 24/144 (16%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSIG---NLLGLETLDL-KNTL 55
             LD  +  +        G+L  L  L ++  ++K + K       +  L+ LD+ +N++
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386

Query: 56  VRELPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLT-NLQKL----CIIEADS 108
             +         K L  L +   N         L +  F  L   ++ L      I++  
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMS-SN--------ILTDTIFRCLPPRIKVLDLHSNKIKSIP 437

Query: 109 EALKELMKLRQL---RNLLKTIPP 129
           + + +L  L++L    N LK++P 
Sbjct: 438 KQVVKLEALQELNVASNQLKSVPD 461

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 13/152 (8%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLKNTLVRE 58
           K L L    +  L       L  L  L + + +++ +   +      LE LD+ +  ++ 
Sbjct: 55  KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114

Query: 59  LPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL-----CIIEADSEALKE 113
           +      +  LR+L +  +N    F    + + FG+LT L  L        + D   +  
Sbjct: 115 IS--CCPMASLRHLDLS-FN---DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 114 LMKLRQLRNLLKTIPPPLAADRSTKKARFRSH 145
           L     L +L+         +          H
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 19/112 (16%)

Query: 15  EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMV 74
             + +L  L  LSV   ++K +  +      L  L L N  +R+    + +LK L  L +
Sbjct: 79  SPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDTDS-LIHLKNLEILSI 135

Query: 75  YQYNYTAGFAAAKLH--EGFGSLTNLQKLCI----IEADSEALKELMKLRQL 120
            + N        KL      G L+ L+ L +    I  ++  L  L K+  +
Sbjct: 136 -RNN--------KLKSIVMLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWI 177

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 18/143 (12%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVK--NTKVKIIPKSIGNLLGLETLDLKNTLVR 57
           + L L    +  +       L  L  L +    T + I  ++  NL  L  LDL ++ + 
Sbjct: 27  ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86

Query: 58  ELPVEI-RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL-----CIIE-ADSE 109
            L  +  + L  L  L +Y +      + A L +G F +L  L +L      I       
Sbjct: 87  FLHPDAFQGLFHLFELRLY-FCG---LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 110 ALKELMKLRQLR---NLLKTIPP 129
           +  +L  L+ +    N +  +  
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCE 165

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 19  NLFNLHYLSVKNTKVKIIPKSI-GNLLGLETLDLK-NTLVRELPVEI-RNLKRLRYLMVY 75
            L     L +    ++ +  S    L  L+ L+L        +  E  RNL  LR L + 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL- 80

Query: 76  QYNYTAGFAAAKLHEG-FGSLTNLQKLCI-------IEADSEALKELMKLRQL---RNLL 124
             +         LH   F  L +L +L +               + L  L +L   +N +
Sbjct: 81  GSSKIY-----FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 125 KTIPPPLA 132
           +++    +
Sbjct: 136 RSLYLHPS 143

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 18/133 (13%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             L  +   +  L   V  L  L YL+    K+  +   +     L  L+     + E+ 
Sbjct: 88  TYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID 143

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLC-----IIEADSEALKELM 115
             + +  +L  L  +                    T L  L      I E D    K L 
Sbjct: 144 --VSHNTQLTELDCHLNKKITKLD-------VTPQTQLTTLDCSFNKITELDVSQNKLLN 194

Query: 116 KLRQLRNLLKTIP 128
           +L    N +  + 
Sbjct: 195 RLNCDTNNITKLD 207

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 23/135 (17%), Positives = 35/135 (25%), Gaps = 22/135 (16%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             LD     +  +   V  L  L Y       +  +   +  L  L TL    T + E+ 
Sbjct: 215 TFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEID 270

Query: 61  VEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL----CIIEADSEALKELMK 116
             + +  +L Y                        T L  L      I      L +  K
Sbjct: 271 --LTHNTQLIYFQAEGCRKIK-------ELDVTHNTQLYLLDCQAAGIT--ELDLSQNPK 319

Query: 117 LRQLR---NLLKTIP 128
           L  L      L  + 
Sbjct: 320 LVYLYLNNTELTELD 334

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 27/118 (22%), Positives = 35/118 (29%), Gaps = 18/118 (15%)

Query: 17  VGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQ 76
              L  L  L   N+ +  +   I  L GL  L   +  +  L   +     L YL    
Sbjct: 38  EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACD- 93

Query: 77  YNYTAGFAAAKLHE-GFGSLTNLQKL-----CIIEADSEALKELMKLRQLRNLLKTIP 128
            N        KL       LT L  L      + + D      L  L   RN L  I 
Sbjct: 94  SN--------KLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID 143

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 33/154 (21%), Positives = 48/154 (31%), Gaps = 40/154 (25%)

Query: 12  YLPEGV-GNLFNLHYLSVKNTKVKIIPKSI-------------GNL-------------- 43
           Y+      NL NL YL + NT +K +P                 N+              
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 44  LGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKLC 102
                L L    ++E+     N  +L  L +   N        +L    F   +    L 
Sbjct: 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN-----LEELPNDVFHGASGPVILD 208

Query: 103 I----IEA-DSEALKELMKLRQLRNL-LKTIPPP 130
           I    I +  S  L+ L KLR      LK +P  
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 242

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 13/110 (11%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVREL 59
             L L    +  +  G    L  L  L + N K+  +P  + +L  L+ + L    + ++
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279

Query: 60  PVEI-------RNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQKL 101
            V                 + ++  N        ++    F  +T+   +
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLF-NNP---VPYWEVQPATFRCVTDRLAI 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	437
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.77
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.76
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.74
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.73
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.73
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.73
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.67
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.66
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.56
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.53
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.49
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.47
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.46
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.97
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.93
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.89
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.77
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.54
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.21
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.0
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.46
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.9
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.7
1dsq_A	26	Nucleic acid binding protein P14; CCHC type zinc f	96.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.62
1nc8_A	29	Nucleocapsid protein; HIV-2, RNA recognition, zinc	96.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.35
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.28
1a6b_B	40	Momulv, zinc finger protein NCP10; nucleocapsid pr	96.26
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.06
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.86
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.69
1u6p_A	56	GAG polyprotein; MLV, A-minor K-turn, stem loop, b	95.57
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.16
2hqh_E	26	Restin; beta/BETA structure, zinc finger motif, st	95.14
2ysa_A	55	Retinoblastoma-binding protein 6; zinc finger, CCH	95.0
3nyb_B	83	Protein AIR2; polya RNA polymerase, zinc knuckle p	93.51
2ec7_A	49	GAG polyprotein (PR55GAG); nucleocapsid protein, H	93.28
2bl6_A	37	Nucleocapsid protein P11; lentivirus, polyprotein,	92.78
2a51_A	39	Nucleocapsid protein; sivlhoest, structure, NCP8,	92.67
2ihx_A	61	Nucleocapsid (NC) protein; protein-RNA complex, vi	92.27
2ihx_A	61	Nucleocapsid (NC) protein; protein-RNA complex, vi	92.18
2ec7_A	49	GAG polyprotein (PR55GAG); nucleocapsid protein, H	92.06
2bl6_A	37	Nucleocapsid protein P11; lentivirus, polyprotein,	91.77
1a1t_A	55	Nucleocapsid protein; stem-loop RNA, viral protein	91.71
2a51_A	39	Nucleocapsid protein; sivlhoest, structure, NCP8,	91.57
2cqf_A	63	RNA-binding protein LIN-28; CCHC zinc-finger, stru	90.86
2cqf_A	63	RNA-binding protein LIN-28; CCHC zinc-finger, stru	90.33
1cl4_A	60	Protein (GAG polyprotein); nucleocapsid protein, R	90.13
1a1t_A	55	Nucleocapsid protein; stem-loop RNA, viral protein	89.93
2li8_A	74	Protein LIN-28 homolog A; zinc finger, micro RNA,	89.21
2li8_A	74	Protein LIN-28 homolog A; zinc finger, micro RNA,	89.01
1cl4_A	60	Protein (GAG polyprotein); nucleocapsid protein, R	87.74
2pzo_E	42	CAP-Gly domain-containing linker protein 1; struct	87.72
3nyb_B	83	Protein AIR2; polya RNA polymerase, zinc knuckle p	86.75
3ts2_A	148	Protein LIN-28 homolog A; microrna biogenesis, pro	86.69
3e2u_E	42	CAP-Gly domain-containing linker protein 1; struct	82.84
3ts2_A	148	Protein LIN-28 homolog A; microrna biogenesis, pro	81.49

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=5.2e-22  Score=190.49  Aligned_cols=182  Identities=21%  Similarity=0.303  Sum_probs=154.8

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|+|++|.++.+|+.++++++|++|+|++|.+..+|..++++++|++|++++|.+..+|..++++++|++|++++|++.
T Consensus        84 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~  163 (328)
T 4fcg_A           84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL  163 (328)
T ss_dssp             CEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred             eEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             ccccccccccccc---------CCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeC
Q 047084           81 AGFAAAKLHEGFG---------SLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRS  144 (437)
Q Consensus        81 ~~~~~~~lp~~~~---------~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~  144 (437)
                      +..     |..++         ++++|++|++++|.    +..+..+..|+.+   +|.+..+|..+..+++|++|++++
T Consensus       164 ~~~-----p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          164 TEL-----PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             CCC-----CSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred             ccc-----ChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence            654     65554         49999999999998    3445555555544   788888999999999999999999


Q ss_pred             CcCCCCCCCCc----hhhhhhcCCCCC----C-CCchhccceeeecCCCCcc
Q 047084          145 HEVDADSPSPL----SFKDALVHPEQY----R-SSEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       145 N~l~~~~p~~~----~~~~~~l~~n~l----~-~~~~~~~~~~L~L~~n~l~  187 (437)
                      |++.+.+|..+    ++..+.+++|.+    + .+.....++.|+|++|++.
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            99998888765    566777888766    1 2334456788999999987

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=4e-23  Score=196.95  Aligned_cols=235  Identities=14%  Similarity=0.157  Sum_probs=156.8

Q ss_pred             CEEEecCCCCC---cCCccccCCCCCcEEEeec-ccC-cccChhhhcccCCCEEEccCCccc-ccchhhcCCcCCcEEec
Q 047084            1 KVLDLEDAPVD---YLPEGVGNLFNLHYLSVKN-TKV-KIIPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKRLRYLMV   74 (437)
Q Consensus         1 ~~L~L~~n~l~---~lp~~~~~l~~L~~L~L~~-n~l-~~lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l   74 (437)
                      +.|+|++|.++   .+|..+.++++|++|++++ |.+ +.+|..++++++|++|++++|.+. .+|..+.++++|++|++
T Consensus        53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  132 (313)
T 1ogq_A           53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF  132 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred             EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence            36889999986   6888999999999999995 777 488888999999999999966665 78888999999999999


Q ss_pred             eeeccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCC-CCCeEEeeCCcCCCCCCC
Q 047084           75 YQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADR-STKKARFRSHEVDADSPS  153 (437)
Q Consensus        75 ~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~-~L~~L~l~~N~l~~~~p~  153 (437)
                      ++|.+++.     +|..+..+++|++|++++|...               +.+|..++.++ +|++|++++|++++.+|.
T Consensus       133 s~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~---------------~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~  192 (313)
T 1ogq_A          133 SYNALSGT-----LPPSISSLPNLVGITFDGNRIS---------------GAIPDSYGSFSKLFTSMTISRNRLTGKIPP  192 (313)
T ss_dssp             CSSEEESC-----CCGGGGGCTTCCEEECCSSCCE---------------EECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred             CCCccCCc-----CChHHhcCCCCCeEECcCCccc---------------CcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence            99999864     3788899999999999987621               23444444444 455555555555444443


Q ss_pred             Cch---hhhhhcCCCCCC-----CCchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcC
Q 047084          154 PLS---FKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIG  225 (437)
Q Consensus       154 ~~~---~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls  225 (437)
                      .+.   +..+.+++|++.     .+.....++.|+|++|+++.    ..+.+.                ...++..++++
T Consensus       193 ~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~----------------~l~~L~~L~Ls  252 (313)
T 1ogq_A          193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF----DLGKVG----------------LSKNLNGLDLR  252 (313)
T ss_dssp             GGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC----BGGGCC----------------CCTTCCEEECC
T ss_pred             HHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee----ecCccc----------------ccCCCCEEECc
Confidence            321   222333333330     11122345667777777751    111110                01123334566


Q ss_pred             HHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHHHh----HHcCceEEc
Q 047084          226 YKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYA----LTEGPWVIF  275 (437)
Q Consensus       226 ~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~~v----l~~~pw~~~  275 (437)
                      .|.+++.++..+.....++.+++++|.+....+....+..+    +.++||.++
T Consensus       253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             CCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence            66666566677778889999999999999877765443332    566777664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=1.4e-22  Score=216.15  Aligned_cols=270  Identities=17%  Similarity=0.154  Sum_probs=196.0

Q ss_pred             CEEEecCCCCC-cCCccccCCCCCcEEEeecccCc-ccChhhhcccCCCEEEccCCccc-ccchhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~n   77 (437)
                      ++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|++|++++|
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  476 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN  476 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence            46777777774 66778888888888888888884 77888888888888888855554 77888888888888888888


Q ss_pred             ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---cccc-ccCCchhhcCCCCCeEEeeCCcCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLL-KTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~-~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      ++++..     |..++.+++|+.|++++|+     +..+..+..|+.+   +|.+ +.+|..+..+++|+.|++++|+++
T Consensus       477 ~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          477 DLTGEI-----PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             CCCSCC-----CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccCcC-----CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            888654     7788889999999999887     3455555555555   4554 588888999999999999999999


Q ss_pred             CCCCCCchhhhh----hc----------------------------------------------CCCCC-----CCCchh
Q 047084          149 ADSPSPLSFKDA----LV----------------------------------------------HPEQY-----RSSEDA  173 (437)
Q Consensus       149 ~~~p~~~~~~~~----~l----------------------------------------------~~n~l-----~~~~~~  173 (437)
                      |.+|..+.....    .+                                              ..|.+     ..+...
T Consensus       552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l  631 (768)
T 3rgz_A          552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN  631 (768)
T ss_dssp             SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred             CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence            888865421100    00                                              00111     011223


Q ss_pred             ccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEE
Q 047084          174 EMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVID  247 (437)
Q Consensus       174 ~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~  247 (437)
                      ..++.|||++|++++..+      ..+..+.++.|.+++..+..... ...+..+++++|.+++.+|..+..+..++.++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~-L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            345779999999984443      55667888888887554432111 23455678999999999999999999999999


Q ss_pred             cCCcEEEEEeCChhhHHH----hHHcCceEEcC
Q 047084          248 LENNYFLIRLKSPEDAVY----ALTEGPWVIFG  276 (437)
Q Consensus       248 l~~N~f~~~f~~~~d~~~----vl~~~pw~~~~  276 (437)
                      +++|.+....+....+..    ...++|+.|..
T Consensus       711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             CCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred             CcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence            999999998876554433    25678887754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=7.5e-23  Score=206.46  Aligned_cols=278  Identities=18%  Similarity=0.177  Sum_probs=178.5

Q ss_pred             CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.++.++ ..|.++++|++|+|++|.+..+ |..|.++++|++|++++|.++.+|.. |.++++|++|++++|
T Consensus        35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  114 (477)
T 2id5_A           35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN  114 (477)
T ss_dssp             SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred             cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence            57899999998885 4788999999999999999755 67888999999999998888888875 788999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccccCCc-hhhcCCCCCeEEeeCCcCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKTIPP-PLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~ip~-~~~~l~~L~~L~l~~N~l~  148 (437)
                      .+++..     |..|..+++|+.|++++|.     +..+..+..|+.+   +|.+..+|. .+..+++|+.|++++|.++
T Consensus       115 ~i~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          115 KIVILL-----DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             CCCEEC-----TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ccccCC-----hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            988543     5678888899999998886     2334444444444   666777774 5778888888888888887


Q ss_pred             CCCCCCc----hhhhhhcCCCCC-----CCCchhccceeeecCCCCcccCC------CCCCCeEeechHHHhhhcccccc
Q 047084          149 ADSPSPL----SFKDALVHPEQY-----RSSEDAEMEEEWDLEPGDVTIGD------DGTMPTIKFSKRIQDKLIKPWQN  213 (437)
Q Consensus       149 ~~~p~~~----~~~~~~l~~n~l-----~~~~~~~~~~~L~L~~n~l~~~~------~~~lp~l~l~~n~l~~l~~~~~~  213 (437)
                      +..+..+    ++..+.++.|..     +.......++.|+|++|+++...      ...+..+.++.|.+..+......
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence            5433333    344455555443     11111223455666666665322      13455555665555443331110


Q ss_pred             eEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEE----eCChhhHHHh-HHcCceEEcCceEEEeec
Q 047084          214 SVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIR----LKSPEDAVYA-LTEGPWVIFGHYLTVQPW  284 (437)
Q Consensus       214 ~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~----f~~~~d~~~v-l~~~pw~~~~~~l~l~~w  284 (437)
                       ...++..+.++.|.+....+..+.....++.+++++|.+...    |.....++.+ +.++||.+++....+..|
T Consensus       270 -~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~  344 (477)
T 2id5_A          270 -ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRR  344 (477)
T ss_dssp             -TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTT
T ss_pred             -ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhh
Confidence             011233345556666555566666777777777777765531    2222222222 566777776665444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=4.9e-22  Score=207.50  Aligned_cols=247  Identities=15%  Similarity=0.180  Sum_probs=195.3

Q ss_pred             CEEEecCCCCCc------------------CCcccc--CCCCCcEEEeecccC-cccChhhhcccCCCEEEccCCc-cc-
Q 047084            1 KVLDLEDAPVDY------------------LPEGVG--NLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTL-VR-   57 (437)
Q Consensus         1 ~~L~L~~n~l~~------------------lp~~~~--~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~l~~~~-~~-   57 (437)
                      ++|+|++|.++.                  +|+.++  ++++|++|+|++|.+ +.+|..++++++|++|++++|. ++ 
T Consensus       209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~  288 (636)
T 4eco_A          209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG  288 (636)
T ss_dssp             CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred             CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence            689999999987                  999998  999999999999997 6899999999999999999775 65 


Q ss_pred             -ccchhhcCC------cCCcEEeceeeccccccccccccc--cccCCccCcEEEeecCChH----hHhhccchHhc---c
Q 047084           58 -ELPVEIRNL------KRLRYLMVYQYNYTAGFAAAKLHE--GFGSLTNLQKLCIIEADSE----ALKELMKLRQL---R  121 (437)
Q Consensus        58 -~lp~~~~~L------~~L~~L~l~~n~l~~~~~~~~lp~--~~~~l~~L~~L~l~~n~~~----~~~~L~~L~~l---~  121 (437)
                       .+|..+++|      ++|++|++++|+++      .+|.  .++.+++|++|++++|...    .+..+..|+.+   +
T Consensus       289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          289 EQLKDDWQALADAPVGEKIQIIYIGYNNLK------TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY  362 (636)
T ss_dssp             HHHHHHHHHHHHSGGGGTCCEEECCSSCCS------SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCS
T ss_pred             ccchHHHHhhhccccCCCCCEEECCCCcCC------ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCC
Confidence             599998887      99999999999998      5688  8999999999999999854    34344444444   6


Q ss_pred             cccccCCchhhcCCC-CCeEEeeCCcCCCCCCCCc------hhhhhhcCCCCCCC-----Cc-------hhccceeeecC
Q 047084          122 NLLKTIPPPLAADRS-TKKARFRSHEVDADSPSPL------SFKDALVHPEQYRS-----SE-------DAEMEEEWDLE  182 (437)
Q Consensus       122 n~~~~ip~~~~~l~~-L~~L~l~~N~l~~~~p~~~------~~~~~~l~~n~l~~-----~~-------~~~~~~~L~L~  182 (437)
                      |.+..+|..+..+++ |++|++++|+++ .+|..+      ++..+.++.|++..     +.       ....++.|+|+
T Consensus       363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls  441 (636)
T 4eco_A          363 NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS  441 (636)
T ss_dssp             SEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred             CccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence            778899999999999 999999999999 788765      35667788888822     22       23356889999


Q ss_pred             CCCcccCCC------CCCCeEeechHHHhhhcccccceEEE------EecCCCcCHHHHHHHHHhccc--CCCceEEEEc
Q 047084          183 PGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQNSVVV------KLLGRNIGYKVLCNRLKVMWH--QIHDFSVIDL  248 (437)
Q Consensus       183 ~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~~l~~------~l~~~~ls~n~l~~~l~~~w~--~~~~l~~l~l  248 (437)
                      +|+++..+.      ..+..+.++.|.+..++.........      ++..++++.|.++ .++..+.  ....++.+++
T Consensus       442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L  520 (636)
T 4eco_A          442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDL  520 (636)
T ss_dssp             SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEEC
T ss_pred             CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEEC
Confidence            999984432      56777888888888655433221111      4555678888877 4566665  8889999999


Q ss_pred             CCcEEEE
Q 047084          249 ENNYFLI  255 (437)
Q Consensus       249 ~~N~f~~  255 (437)
                      ++|.+..
T Consensus       521 s~N~l~~  527 (636)
T 4eco_A          521 SYNSFSK  527 (636)
T ss_dssp             CSSCCSS
T ss_pred             CCCCCCC
Confidence            9998763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=4.8e-22  Score=207.57  Aligned_cols=247  Identities=17%  Similarity=0.179  Sum_probs=183.5

Q ss_pred             EEEecCCCC-CcCCccccCCCCCcEEEeecccC-----------------------------------------------
Q 047084            2 VLDLEDAPV-DYLPEGVGNLFNLHYLSVKNTKV-----------------------------------------------   33 (437)
Q Consensus         2 ~L~L~~n~l-~~lp~~~~~l~~L~~L~L~~n~l-----------------------------------------------   33 (437)
                      .|+|++|.+ +.+|+++++|++|++|+|++|.+                                               
T Consensus        85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~  164 (636)
T 4eco_A           85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD  164 (636)
T ss_dssp             EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence            689999998 68899999999999999999843                                               


Q ss_pred             -------------------------------cccChhhhcccCCCEEEccCCcccc------------------cchhhc
Q 047084           34 -------------------------------KIIPKSIGNLLGLETLDLKNTLVRE------------------LPVEIR   64 (437)
Q Consensus        34 -------------------------------~~lp~~~~~l~~L~~L~l~~~~~~~------------------lp~~~~   64 (437)
                                                     +.+|+.++++++|++|++++|.+..                  +|..++
T Consensus       165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~  244 (636)
T 4eco_A          165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK  244 (636)
T ss_dssp             HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             HhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence                                           2488899999999999999887877                  999988


Q ss_pred             --CCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCC-hH------hHhhc------cchHhc---cccccc
Q 047084           65 --NLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-SE------ALKEL------MKLRQL---RNLLKT  126 (437)
Q Consensus        65 --~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-~~------~~~~L------~~L~~l---~n~~~~  126 (437)
                        ++++|++|++++|.+.|.     +|..++++++|++|++++|+ ..      .+..+      ..|+.+   +|.+..
T Consensus       245 ~~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~  319 (636)
T 4eco_A          245 WDNLKDLTDVEVYNCPNLTK-----LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT  319 (636)
T ss_dssp             GGGCTTCCEEEEECCTTCSS-----CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred             hcccCCCCEEEecCCcCCcc-----ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence              999999999999999875     48899999999999999997 33      23333      444444   677789


Q ss_pred             CCc--hhhcCCCCCeEEeeCCcCCCCCCCCc----hhhhhhcCCCCCC----CCchhcc-ceeeecCCCCcccCCC----
Q 047084          127 IPP--PLAADRSTKKARFRSHEVDADSPSPL----SFKDALVHPEQYR----SSEDAEM-EEEWDLEPGDVTIGDD----  191 (437)
Q Consensus       127 ip~--~~~~l~~L~~L~l~~N~l~~~~p~~~----~~~~~~l~~n~l~----~~~~~~~-~~~L~L~~n~l~~~~~----  191 (437)
                      +|.  .++.+++|++|++++|+++|.+| .+    ++..+.++.|++.    .+..... ++.|++++|+++..+.    
T Consensus       320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~  398 (636)
T 4eco_A          320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA  398 (636)
T ss_dssp             CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred             cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence            998  89999999999999999999899 55    4667778888772    2333444 7889999999873322    


Q ss_pred             ---CCCCeEeechHHHhhhcccccc------eEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084          192 ---GTMPTIKFSKRIQDKLIKPWQN------SVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       192 ---~~lp~l~l~~n~l~~l~~~~~~------~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                         ..+..+.++.|.+....+.+..      ....++..++++.|.+.......+.....++.+++++|.+.
T Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence               1345566666666654332111      01113344456666665444444555677777777777665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=2.2e-20  Score=179.15  Aligned_cols=161  Identities=20%  Similarity=0.293  Sum_probs=141.0

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEcc-CCcccccchhhcC---------CcCCc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLK-NTLVRELPVEIRN---------LKRLR   70 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~-~~~~~~lp~~~~~---------L~~L~   70 (437)
                      ++|+|++|.+..+|..++++++|++|+|++|.+..+|..++++++|++|+++ ++.++.+|..+..         +++|+
T Consensus       107 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~  186 (328)
T 4fcg_A          107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ  186 (328)
T ss_dssp             SEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCC
T ss_pred             CEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCC
Confidence            6899999999999999999999999999999999999999999999999999 5788899987764         99999


Q ss_pred             EEeceeeccccccccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---c-cccccCCchhhcCCCCCeEEe
Q 047084           71 YLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---R-NLLKTIPPPLAADRSTKKARF  142 (437)
Q Consensus        71 ~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~-n~~~~ip~~~~~l~~L~~L~l  142 (437)
                      +|++++|.++      .+|..++.+++|++|++++|.    +..+..+..|+.+   + +..+.+|..+..+++|++|++
T Consensus       187 ~L~L~~n~l~------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          187 SLRLEWTGIR------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             EEEEEEECCC------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             EEECcCCCcC------cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            9999999998      568889999999999999998    3445555555555   3 567889999999999999999


Q ss_pred             eCCcCCCCCCCCc----hhhhhhcCCCCC
Q 047084          143 RSHEVDADSPSPL----SFKDALVHPEQY  167 (437)
Q Consensus       143 ~~N~l~~~~p~~~----~~~~~~l~~n~l  167 (437)
                      ++|++.+.+|..+    ++..+.+++|.+
T Consensus       261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             TTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred             CCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence            9999999999776    456677888776

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.82  E-value=1.9e-21  Score=207.44  Aligned_cols=182  Identities=20%  Similarity=0.220  Sum_probs=104.4

Q ss_pred             CEEEecCCCCC-cCCcc-ccCCCCCcEEEeecccCc-ccChhhhccc-CCCEEEccCCc---------------------
Q 047084            1 KVLDLEDAPVD-YLPEG-VGNLFNLHYLSVKNTKVK-IIPKSIGNLL-GLETLDLKNTL---------------------   55 (437)
Q Consensus         1 ~~L~L~~n~l~-~lp~~-~~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~l~~~~---------------------   55 (437)
                      ++|++++|.+. .+|.. +.++++|++|++++|.+. .+|..+.++. +|++|++++|.                     
T Consensus       321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~  400 (768)
T 3rgz_A          321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY  400 (768)
T ss_dssp             CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred             cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence            45677777764 66654 667777777777777764 6666666554 55555555332                     


Q ss_pred             -----cc-ccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---c
Q 047084           56 -----VR-ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---R  121 (437)
Q Consensus        56 -----~~-~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~  121 (437)
                           +. .+|..++++++|++|++++|.+++..     |..++.+++|+.|++++|.     +..+..+..|+.+   +
T Consensus       401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  475 (768)
T 3rgz_A          401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-----PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF  475 (768)
T ss_dssp             CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC-----CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             CCCCccccccCHHHhcCCCCCEEECcCCcccCcc-----cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence                 22 44555556666666666666665432     5556666666666666665     2333333333333   3


Q ss_pred             ccc-ccCCchhhcCCCCCeEEeeCCcCCCCCCCCc----hhhhhhcCCCCCC-----CCchhccceeeecCCCCcc
Q 047084          122 NLL-KTIPPPLAADRSTKKARFRSHEVDADSPSPL----SFKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       122 n~~-~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~----~~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~  187 (437)
                      |.+ +.+|..+..+++|++|++++|++++.+|..+    ++..+.+++|++.     .+.....++.|++++|+++
T Consensus       476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            433 3566666666667777777777766666554    3445556666651     1222334566777777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=2.4e-21  Score=206.87  Aligned_cols=247  Identities=15%  Similarity=0.202  Sum_probs=189.7

Q ss_pred             CEEEecCCCCCc------------------CCcccc--CCCCCcEEEeecccC-cccChhhhcccCCCEEEccCCc-cc-
Q 047084            1 KVLDLEDAPVDY------------------LPEGVG--NLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTL-VR-   57 (437)
Q Consensus         1 ~~L~L~~n~l~~------------------lp~~~~--~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~l~~~~-~~-   57 (437)
                      ++|+|++|.++.                  +|+.++  ++++|++|+|++|.+ +.+|..++++++|++|++++|. +. 
T Consensus       451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg  530 (876)
T 4ecn_A          451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA  530 (876)
T ss_dssp             CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred             CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence            689999999977                  999887  999999999999986 6899999999999999999775 65 


Q ss_pred             -ccchhhcCCc-------CCcEEeceeeccccccccccccc--cccCCccCcEEEeecCChHhH---hhccchHhc---c
Q 047084           58 -ELPVEIRNLK-------RLRYLMVYQYNYTAGFAAAKLHE--GFGSLTNLQKLCIIEADSEAL---KELMKLRQL---R  121 (437)
Q Consensus        58 -~lp~~~~~L~-------~L~~L~l~~n~l~~~~~~~~lp~--~~~~l~~L~~L~l~~n~~~~~---~~L~~L~~l---~  121 (437)
                       .+|..+++++       +|++|++++|.++      .+|.  .++++++|+.|++++|....+   ..+..|+.+   +
T Consensus       531 ~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLE------EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY  604 (876)
T ss_dssp             HHHHHHHHHHHHCTTTTTTCCEEECCSSCCC------BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCS
T ss_pred             ccchHHHHhhhhcccccCCccEEEeeCCcCC------ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcC
Confidence             5898887776       9999999999998      5688  899999999999999984433   333333333   6


Q ss_pred             cccccCCchhhcCCC-CCeEEeeCCcCCCCCCCCch------hhhhhcCCCCCCC----Cc------hhccceeeecCCC
Q 047084          122 NLLKTIPPPLAADRS-TKKARFRSHEVDADSPSPLS------FKDALVHPEQYRS----SE------DAEMEEEWDLEPG  184 (437)
Q Consensus       122 n~~~~ip~~~~~l~~-L~~L~l~~N~l~~~~p~~~~------~~~~~l~~n~l~~----~~------~~~~~~~L~L~~n  184 (437)
                      |.+..+|..+..+++ |+.|+|++|+++ .+|..+.      +..+.++.|++..    ..      ....++.|+|++|
T Consensus       605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N  683 (876)
T 4ecn_A          605 NQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN  683 (876)
T ss_dssp             SCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred             CccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence            778899999999998 999999999999 7887652      5667788888721    11      1224678999999


Q ss_pred             CcccCC------CCCCCeEeechHHHhhhcccccceEE------EEecCCCcCHHHHHHHHHhccc--CCCceEEEEcCC
Q 047084          185 DVTIGD------DGTMPTIKFSKRIQDKLIKPWQNSVV------VKLLGRNIGYKVLCNRLKVMWH--QIHDFSVIDLEN  250 (437)
Q Consensus       185 ~l~~~~------~~~lp~l~l~~n~l~~l~~~~~~~l~------~~l~~~~ls~n~l~~~l~~~w~--~~~~l~~l~l~~  250 (437)
                      +++..+      ...+..+.++.|.+..++........      .++..++++.|.++ .++..+.  ..+.++.+++++
T Consensus       684 ~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~  762 (876)
T 4ecn_A          684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY  762 (876)
T ss_dssp             CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCS
T ss_pred             cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCC
Confidence            988433      24677788888877755543322110      03445567777777 4555554  788899999999


Q ss_pred             cEEEE
Q 047084          251 NYFLI  255 (437)
Q Consensus       251 N~f~~  255 (437)
                      |.+..
T Consensus       763 N~L~~  767 (876)
T 4ecn_A          763 NCFSS  767 (876)
T ss_dssp             SCCSS
T ss_pred             CCCCc
Confidence            98763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=7e-21  Score=182.69  Aligned_cols=99  Identities=28%  Similarity=0.371  Sum_probs=49.2

Q ss_pred             EEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084            2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l   79 (437)
                      +|+|++|.++.+|. .|.++++|++|++++|.+..+ |..+.++++|++|++++|.++.+|..+.  ++|++|++++|.+
T Consensus        56 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l  133 (330)
T 1xku_A           56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEI  133 (330)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCC
T ss_pred             EEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcc
Confidence            45555555555543 345555555555555555433 4445555555555555555555554432  4455555555554


Q ss_pred             ccccccccccccccCCccCcEEEeecCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~  107 (437)
                      ++..     +..+.++++|++|++++|.
T Consensus       134 ~~~~-----~~~~~~l~~L~~L~l~~n~  156 (330)
T 1xku_A          134 TKVR-----KSVFNGLNQMIVVELGTNP  156 (330)
T ss_dssp             CBBC-----HHHHTTCTTCCEEECCSSC
T ss_pred             cccC-----HhHhcCCccccEEECCCCc
Confidence            4221     2234455555555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=5.4e-21  Score=191.53  Aligned_cols=102  Identities=24%  Similarity=0.334  Sum_probs=72.9

Q ss_pred             CEEEecCCCCCcC-CccccCCCCCcEEEeecccCc-ccC-hhhhcccCCCEEEccCCccccc-chhhcCCcCCcEEecee
Q 047084            1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVK-IIP-KSIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQ   76 (437)
Q Consensus         1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~   76 (437)
                      ++|+|++|.++.+ |..|.++++|++|++++|.+. .++ ..+.++++|++|++++|.+..+ |..|+++++|++|++++
T Consensus        33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  112 (455)
T 3v47_A           33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ  112 (455)
T ss_dssp             CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence            5788888888766 556788888888888888774 553 5577788888888887766655 55677788888888888


Q ss_pred             ecccccccccccccc--ccCCccCcEEEeecCC
Q 047084           77 YNYTAGFAAAKLHEG--FGSLTNLQKLCIIEAD  107 (437)
Q Consensus        77 n~l~~~~~~~~lp~~--~~~l~~L~~L~l~~n~  107 (437)
                      |.+++..     |..  ++.+++|++|++++|.
T Consensus       113 n~l~~~~-----~~~~~~~~l~~L~~L~L~~n~  140 (455)
T 3v47_A          113 CNLDGAV-----LSGNFFKPLTSLEMLVLRDNN  140 (455)
T ss_dssp             SCCBTHH-----HHSSTTTTCTTCCEEECCSSB
T ss_pred             CCCCccc-----cCcccccCcccCCEEECCCCc
Confidence            8777432     332  6667777777777765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=2.9e-21  Score=200.57  Aligned_cols=277  Identities=13%  Similarity=0.102  Sum_probs=195.1

Q ss_pred             CEEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccc-hhhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP-VEIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~n~   78 (437)
                      ++|++++|.++.++.. |.++++|++|++++|.+..+|..++++++|++|++++|.+..++ ..+.++++|++|++++|.
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred             eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence            3688899999888664 78899999999999999999988989999999999988877764 468899999999999998


Q ss_pred             cccccccccccc-cccCCccCcEEEeecCCh-------HhHhhccchHhc---ccccc-cCCchhhcCCCCCeEEeeCCc
Q 047084           79 YTAGFAAAKLHE-GFGSLTNLQKLCIIEADS-------EALKELMKLRQL---RNLLK-TIPPPLAADRSTKKARFRSHE  146 (437)
Q Consensus        79 l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~~-------~~~~~L~~L~~l---~n~~~-~ip~~~~~l~~L~~L~l~~N~  146 (437)
                      +.+..     |. .+..+++|++|++++|..       ..+..+..|+.+   +|.+. ..|..+..+++|++|++++|+
T Consensus       337 ~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          337 KRLEL-----GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             SCCBC-----CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             ccccc-----chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            87543     43 478888999999988872       233444444444   55554 445677888888999999888


Q ss_pred             CCCCCCCC-c----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccC---------CCCCCCeEeechHHHhhh
Q 047084          147 VDADSPSP-L----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIG---------DDGTMPTIKFSKRIQDKL  207 (437)
Q Consensus       147 l~~~~p~~-~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~---------~~~~lp~l~l~~n~l~~l  207 (437)
                      +++..|.. +    ++..+.+++|.+..     +.....++.|++++|+++..         ....+..+.++.+.+...
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence            88655443 2    56667778887721     23344567788888887631         125667777887777665


Q ss_pred             cccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCC-hhhHHHh----HHcCceEEcCceEEEe
Q 047084          208 IKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKS-PEDAVYA----LTEGPWVIFGHYLTVQ  282 (437)
Q Consensus       208 ~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~-~~d~~~v----l~~~pw~~~~~~l~l~  282 (437)
                      .+.... ...++..++++.|.++...+..+.....+ .+++++|.+....+. ...+...    +.++||.+++....+.
T Consensus       492 ~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~  569 (606)
T 3t6q_A          492 DQHAFT-SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFL  569 (606)
T ss_dssp             CTTTTT-TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHH
T ss_pred             Chhhhc-cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHH
Confidence            432211 12345556788888888888889888999 999999988743222 1222221    6778888777654444


Q ss_pred             ec
Q 047084          283 PW  284 (437)
Q Consensus       283 ~w  284 (437)
                      .|
T Consensus       570 ~w  571 (606)
T 3t6q_A          570 EW  571 (606)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=2e-21  Score=207.54  Aligned_cols=244  Identities=14%  Similarity=0.169  Sum_probs=193.3

Q ss_pred             CEEEecCCCC-CcCCccccCCCCCcEEEeeccc-Cc--ccChhhhccc-------CCCEEEccCCcccccch--hhcCCc
Q 047084            1 KVLDLEDAPV-DYLPEGVGNLFNLHYLSVKNTK-VK--IIPKSIGNLL-------GLETLDLKNTLVRELPV--EIRNLK   67 (437)
Q Consensus         1 ~~L~L~~n~l-~~lp~~~~~l~~L~~L~L~~n~-l~--~lp~~~~~l~-------~L~~L~l~~~~~~~lp~--~~~~L~   67 (437)
                      ++|+|++|.+ +.+|..+++|++|++|+|++|+ +.  .+|..+++++       +|++|++++|.+..+|.  .+++++
T Consensus       494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~  573 (876)
T 4ecn_A          494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV  573 (876)
T ss_dssp             CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCT
T ss_pred             CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCC
Confidence            5899999985 8889999999999999999998 85  6999888887       99999999998889999  899999


Q ss_pred             CCcEEeceeeccccccccccccccccCCccCcEEEeecCChH----hHhh----ccchHhcccccccCCchhhcCCC--C
Q 047084           68 RLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE----ALKE----LMKLRQLRNLLKTIPPPLAADRS--T  137 (437)
Q Consensus        68 ~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~----~~~~----L~~L~~l~n~~~~ip~~~~~l~~--L  137 (437)
                      +|++|++++|+++      .+| .|+.+++|+.|++++|...    .+..    |+.|...+|.+..+|..+..++.  |
T Consensus       574 ~L~~L~Ls~N~l~------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          574 KLGLLDCVHNKVR------HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM  646 (876)
T ss_dssp             TCCEEECTTSCCC------BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred             CCCEEECCCCCcc------cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence            9999999999998      568 8999999999999999833    3333    44444447888899988877654  9


Q ss_pred             CeEEeeCCcCCCCCCCCc---------hhhhhhcCCCCCCCCc-----hhccceeeecCCCCcccCCCC-----------
Q 047084          138 KKARFRSHEVDADSPSPL---------SFKDALVHPEQYRSSE-----DAEMEEEWDLEPGDVTIGDDG-----------  192 (437)
Q Consensus       138 ~~L~l~~N~l~~~~p~~~---------~~~~~~l~~n~l~~~~-----~~~~~~~L~L~~n~l~~~~~~-----------  192 (437)
                      +.|+|++|++++.+|...         ++..+.++.|++....     ....++.|+|++|+++..+..           
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence            999999999998766433         5677888999984322     234568899999999844331           


Q ss_pred             --CCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcE
Q 047084          193 --TMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNY  252 (437)
Q Consensus       193 --~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~  252 (437)
                        .+..+.++.|.+..++..+......++..++++.|.+.+ ++..+.....++.+++++|.
T Consensus       727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred             cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence              577788888888866554321123345566788888877 67777788999999998754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.81  E-value=7e-21  Score=192.04  Aligned_cols=249  Identities=17%  Similarity=0.174  Sum_probs=191.7

Q ss_pred             CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccc-hhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELP-VEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.++.+ |..|.++++|++|+|++|.+..+|.. +.++++|++|++++|.+..++ ..|.++++|++|++++|
T Consensus        59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A           59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred             CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence            5899999999888 66899999999999999999988864 788999999999988887764 46999999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccccCC-chhhcCCCCCeEEeeCCcCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKTIP-PPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~ip-~~~~~l~~L~~L~l~~N~l~  148 (437)
                      .+++..     |..|..+++|+.|++++|.     ...+..+..|+.+   +|.+..++ ..+..+++|++|++++|.+.
T Consensus       139 ~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~  213 (477)
T 2id5_A          139 DLVYIS-----HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL  213 (477)
T ss_dssp             TCCEEC-----TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred             ccceeC-----hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence            998543     6679999999999999997     2345555555554   56665555 47888999999999999887


Q ss_pred             CCCCCCc----hhhhhhcCCCCCCCC-----chhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccccc
Q 047084          149 ADSPSPL----SFKDALVHPEQYRSS-----EDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQN  213 (437)
Q Consensus       149 ~~~p~~~----~~~~~~l~~n~l~~~-----~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~  213 (437)
                      +.+|...    ++..+.++.|.+...     .....++.|+|++|+++....      ..+..+.++.|.+..+.+....
T Consensus       214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  293 (477)
T 2id5_A          214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR  293 (477)
T ss_dssp             CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred             cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence            6666543    566777888887332     223456889999999874433      4566778888777665432211


Q ss_pred             eEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE
Q 047084          214 SVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI  255 (437)
Q Consensus       214 ~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~  255 (437)
                       ...++..++++.|.++...+..+.....++.+++++|.+..
T Consensus       294 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          294 -GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             -TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             -CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence             12234456788888887777788888999999999999874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=1.2e-20  Score=181.30  Aligned_cols=198  Identities=18%  Similarity=0.179  Sum_probs=113.3

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~   78 (437)
                      ++|++++|.++.+++ .|.++++|++|++++|.+..+ |..+.++++|++|++++|.+..+|..+.  ++|++|++++|.
T Consensus        57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~  134 (332)
T 2ft3_A           57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR  134 (332)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC
T ss_pred             eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc
Confidence            456666666666643 566667777777777766544 4556666777777777666666666544  566777777666


Q ss_pred             cccccccccccccccCCccCcEEEeecCChHh-------Hh--hccchHhcccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA-------LK--ELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-------~~--~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      +++..     +..|..+++|+.|++++|....       +.  +|+.|...+|.+..+|..+.  ++|++|++++|.+++
T Consensus       135 i~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~  207 (332)
T 2ft3_A          135 IRKVP-----KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQA  207 (332)
T ss_dssp             CCCCC-----SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCC
T ss_pred             cCccC-----HhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCc
Confidence            66321     2346777777777777775321       11  23333333555666665443  567777777777764


Q ss_pred             CCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCC-----CCCCeEeechHHHhhh
Q 047084          150 DSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDD-----GTMPTIKFSKRIQDKL  207 (437)
Q Consensus       150 ~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~-----~~lp~l~l~~n~l~~l  207 (437)
                      ..|..+    .+..+.+++|++..     +.....++.|+|++|+++..+.     ..+..+.++.|.+..+
T Consensus       208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence            443333    44556666666621     2223345667777777663322     3344555555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=6.2e-20  Score=174.82  Aligned_cols=182  Identities=17%  Similarity=0.267  Sum_probs=146.0

Q ss_pred             CEEEecC-CCC-CcCCccccCCCCCcEEEeecccCc-ccChhhhcccCCCEEEccCCccc-ccchhhcCCcCCcEEecee
Q 047084            1 KVLDLED-APV-DYLPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKRLRYLMVYQ   76 (437)
Q Consensus         1 ~~L~L~~-n~l-~~lp~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~   76 (437)
                      ++|++++ |.+ +.+|..|.++++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|++|++++
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  158 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence            5899995 887 578999999999999999999996 89999999999999999988776 7899999999999999999


Q ss_pred             eccccccccccccccccCCc-cCcEEEeecCC-----hHhHhhcc--chHhccccc-ccCCchhhcCCCCCeEEeeCCcC
Q 047084           77 YNYTAGFAAAKLHEGFGSLT-NLQKLCIIEAD-----SEALKELM--KLRQLRNLL-KTIPPPLAADRSTKKARFRSHEV  147 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~-~L~~L~l~~n~-----~~~~~~L~--~L~~l~n~~-~~ip~~~~~l~~L~~L~l~~N~l  147 (437)
                      |++++.     +|..++.+. +|+.|++++|.     +..+..+.  .|...+|.+ +.+|..+..+++|+.|++++|++
T Consensus       159 N~l~~~-----~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          159 NRISGA-----IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             SCCEEE-----CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             CcccCc-----CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            999864     488899998 99999999997     34454443  333335555 45667888999999999999999


Q ss_pred             CCCCCCC---chhhhhhcCCCCCC--C---CchhccceeeecCCCCcc
Q 047084          148 DADSPSP---LSFKDALVHPEQYR--S---SEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       148 ~~~~p~~---~~~~~~~l~~n~l~--~---~~~~~~~~~L~L~~n~l~  187 (437)
                      ++.+|..   .++..+.++.|++.  .   +.....++.|+|++|+++
T Consensus       234 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            8665542   25667778888872  1   223344677888888887

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=3.5e-20  Score=188.96  Aligned_cols=248  Identities=13%  Similarity=0.095  Sum_probs=155.1

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~   78 (437)
                      ++|+|++|.+..+++ .|.++++|++|+|++|++..+ |..++++++|++|++++|.++.+|..  .+++|++|++++|.
T Consensus        24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~  101 (520)
T 2z7x_B           24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA  101 (520)
T ss_dssp             SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC
T ss_pred             cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc
Confidence            467777787777753 677788888888888888655 56777888888888887777778776  78888888888888


Q ss_pred             cccccccccccccccCCccCcEEEeecCCh--HhHhhccch--Hhc---cccc---ccCCchhhc---------------
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS--EALKELMKL--RQL---RNLL---KTIPPPLAA---------------  133 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~--~~~~~L~~L--~~l---~n~~---~~ip~~~~~---------------  133 (437)
                      +++.    .+|..|+.+++|++|++++|..  ..+..+..|  +.+   .|.+   +..|..+..               
T Consensus       102 l~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~  177 (520)
T 2z7x_B          102 FDAL----PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE  177 (520)
T ss_dssp             CSSC----CCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred             cccc----cchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence            8743    2477888899999999988873  233333333  222   2222   223333322               


Q ss_pred             --------------------------------------------------------------------CCCCCeEEeeCC
Q 047084          134 --------------------------------------------------------------------DRSTKKARFRSH  145 (437)
Q Consensus       134 --------------------------------------------------------------------l~~L~~L~l~~N  145 (437)
                                                                                          .++|++|++++|
T Consensus       178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n  257 (520)
T 2z7x_B          178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV  257 (520)
T ss_dssp             CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred             hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence                                                                                126777777888


Q ss_pred             cCCCCCCCCc-----------------------------------hhhhhhcCCCCCCCC---chhccceeeecCCCCcc
Q 047084          146 EVDADSPSPL-----------------------------------SFKDALVHPEQYRSS---EDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       146 ~l~~~~p~~~-----------------------------------~~~~~~l~~n~l~~~---~~~~~~~~L~L~~n~l~  187 (437)
                      +++|.+|..+                                   ++..+.+++|.+...   .....++.|++++|+++
T Consensus       258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~  337 (520)
T 2z7x_B          258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT  337 (520)
T ss_dssp             EEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred             cccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccC
Confidence            8777777654                                   122333444554211   23445677888888887


Q ss_pred             cCCC------CCCCeEeechHHHhhhcc-cccceEEEEecCCCcCHHHHHH-HHHhcccCCCceEEEEcCCcEEE
Q 047084          188 IGDD------GTMPTIKFSKRIQDKLIK-PWQNSVVVKLLGRNIGYKVLCN-RLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       188 ~~~~------~~lp~l~l~~n~l~~l~~-~~~~~l~~~l~~~~ls~n~l~~-~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                      ...+      ..+..+.++.|.+..+.. +.......++..++++.|.+.. .....+...+.++.+++++|.+.
T Consensus       338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred             hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence            4222      455667777776664321 0000112234455677777766 33334666777888888888764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=8.2e-21  Score=184.00  Aligned_cols=232  Identities=15%  Similarity=0.169  Sum_probs=133.3

Q ss_pred             EEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeeccc
Q 047084            3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~   80 (437)
                      .++++|.++++|..+.  ++|++|++++|.++.+|. .+.++++|++|++++|.++.+++ .|.++++|++|++++|+++
T Consensus        36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence            4566667777776554  367777777777765554 56667777777777666666543 4667777777777777766


Q ss_pred             ccccccccccc-ccCCccCcEEEeecCChH------hHhhccchHhc---cc-ccccCC-chhhcCCCCCeEEeeCCcCC
Q 047084           81 AGFAAAKLHEG-FGSLTNLQKLCIIEADSE------ALKELMKLRQL---RN-LLKTIP-PPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        81 ~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~------~~~~L~~L~~l---~n-~~~~ip-~~~~~l~~L~~L~l~~N~l~  148 (437)
                      +      +|.. ++++++|++|++++|+..      .+..+..|+.+   +| .+..++ ..+..+++|++|++++|+++
T Consensus       114 ~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          114 N------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             S------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             c------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            3      3433 666777777777776522      23333333333   33 354543 56777888888888888887


Q ss_pred             CCCCCCc----hhhhhhcCCCCCCCCc-----hhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEe
Q 047084          149 ADSPSPL----SFKDALVHPEQYRSSE-----DAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKL  219 (437)
Q Consensus       149 ~~~p~~~----~~~~~~l~~n~l~~~~-----~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l  219 (437)
                      +..|..+    ++..+.++.|++....     ....++.|++++|+++......++....        .   .......+
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~--------~---~~l~~l~L  256 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET--------N---SLIKKFTF  256 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C--------C---CCCCEEEE
T ss_pred             ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc--------c---chhhcccc
Confidence            6555544    4556667777763211     2345688999999987433222211100        0   00011233


Q ss_pred             cCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084          220 LGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       220 ~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                      ....++.+.+.. ++..+...+.++.+++++|.+.
T Consensus       257 ~~~~l~~~~l~~-l~~~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          257 RNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             ESCBCCHHHHHH-HHHHHHTCTTCCEEECCSSCCC
T ss_pred             ccccccCcchhh-hHHHHhcccCCCEEECCCCCCC
Confidence            444555555543 3444555556666666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.79  E-value=4.4e-20  Score=191.72  Aligned_cols=253  Identities=20%  Similarity=0.176  Sum_probs=195.3

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCccc-ccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVR-ELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~-~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|++++|.++++|..+.++++|++|++++|.+..+ |..+.++++|++|++++|.+. .+|.. +.++++|++|++++|
T Consensus       281 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  360 (606)
T 3t6q_A          281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD  360 (606)
T ss_dssp             SEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred             CEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence            589999999999999999999999999999999765 568999999999999976654 77775 899999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccccC-C-chhhcCCCCCeEEeeCCcC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKTI-P-PPLAADRSTKKARFRSHEV  147 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~i-p-~~~~~l~~L~~L~l~~N~l  147 (437)
                      .+++..   ..|..++.+++|++|++++|.     +..+..+..|+.+   +|.+... | ..+..+++|++|++++|.+
T Consensus       361 ~l~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  437 (606)
T 3t6q_A          361 DIETSD---CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL  437 (606)
T ss_dssp             CCCEEE---ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred             cccccc---CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence            998532   235678999999999999997     3444444544444   5665443 4 3488999999999999999


Q ss_pred             CCCCCCCc----hhhhhhcCCCCCCC--------CchhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcc
Q 047084          148 DADSPSPL----SFKDALVHPEQYRS--------SEDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIK  209 (437)
Q Consensus       148 ~~~~p~~~----~~~~~~l~~n~l~~--------~~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~  209 (437)
                      ++..|..+    ++..+.+++|.+..        +.....++.|++++|+++...+      ..+..+.++.|.+....+
T Consensus       438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  517 (606)
T 3t6q_A          438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI  517 (606)
T ss_dssp             BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred             CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence            97766654    56778889998721        2334556889999999985543      567778899888876654


Q ss_pred             cccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeC
Q 047084          210 PWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLK  258 (437)
Q Consensus       210 ~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~  258 (437)
                      .+... ...+ .++++.|.++...+..+.....++.+++++|.+....+
T Consensus       518 ~~l~~-l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          518 EALSH-LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             GGGTT-CCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             hHhCc-cccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            33221 1223 45678888887777777778889999999999985443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=5.3e-20  Score=189.46  Aligned_cols=101  Identities=21%  Similarity=0.264  Sum_probs=85.3

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~   78 (437)
                      ++|+|++|.++.+|+ .|.++++|++|+|++|.|..+ |..|.++++|++|++++|.++.+|..  .+++|++|++++|+
T Consensus        55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~  132 (562)
T 3a79_B           55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND  132 (562)
T ss_dssp             CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC
T ss_pred             CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC
Confidence            578899999888864 788899999999999998765 56788899999999998888888887  88999999999999


Q ss_pred             cccccccccccccccCCccCcEEEeecCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~  107 (437)
                      +++.    .+|..|+++++|++|++++|.
T Consensus       133 l~~l----~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          133 FDVL----PVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             CSBC----CCCGGGGGCTTCCEEEEECSB
T ss_pred             cccc----CchHhhcccCcccEEecCCCc
Confidence            8843    235778999999999999887

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=1.4e-19  Score=173.59  Aligned_cols=178  Identities=19%  Similarity=0.246  Sum_probs=141.4

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCccccc-chhhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~n~   78 (437)
                      ++++++++.++.+|..+.  +.|++|++++|.++.+++ .+.++++|++|++++|.++.+ |..|+++++|++|++++|.
T Consensus        34 ~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           34 RVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             TEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             eEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence            578999999999998765  689999999999987775 789999999999998888877 6779999999999999999


Q ss_pred             cccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccc---cCCchhhcCCCCCeEEeeCCcC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLK---TIPPPLAADRSTKKARFRSHEV  147 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~---~ip~~~~~l~~L~~L~l~~N~l  147 (437)
                      ++      .+|..+.  ++|++|++++|.     +..+..+..|+.+   +|.+.   ..+..+..+++|++|++++|.+
T Consensus       112 l~------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          112 LK------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CS------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CC------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            98      5576654  799999999997     3345555555555   55553   4567889999999999999999


Q ss_pred             CCCCCCCc--hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccC
Q 047084          148 DADSPSPL--SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIG  189 (437)
Q Consensus       148 ~~~~p~~~--~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~  189 (437)
                      + .+|..+  ++..+.+++|++..     +.....++.|+|++|+++..
T Consensus       184 ~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          184 T-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  231 (330)
T ss_dssp             C-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             c-cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence            9 566543  56677788888722     22344568899999988733

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=4.2e-19  Score=177.22  Aligned_cols=184  Identities=18%  Similarity=0.267  Sum_probs=139.9

Q ss_pred             CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|+++.++ ..|.++++|++|+|++|.|..++ ..|.++++|++|++++|.++.+|.. |..+++|++|++++|
T Consensus        67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  146 (440)
T 3zyj_A           67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN  146 (440)
T ss_dssp             SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred             cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence            57899999998875 47888999999999999987666 5688899999999998888888874 889999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCC------hHhHhhccchHh---cccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD------SEALKELMKLRQ---LRNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~------~~~~~~L~~L~~---l~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      .+++..     +..|..+++|++|++++|+      ...+.++.+|+.   .+|.+..+|. +..+++|++|+|++|+|+
T Consensus       147 ~i~~~~-----~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          147 PIESIP-----SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             CCCEEC-----TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCC
T ss_pred             cccccC-----HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccC
Confidence            988322     3458889999999998854      223444444444   4677788874 778889999999999998


Q ss_pred             CCCCCCc----hhhhhhcCCCCCC-----CCchhccceeeecCCCCcccCC
Q 047084          149 ADSPSPL----SFKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVTIGD  190 (437)
Q Consensus       149 ~~~p~~~----~~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~~~~  190 (437)
                      +..|..+    ++..+.++.|++.     .+.....++.|+|++|+++...
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence            6555554    5667778888872     2334456788899999887443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=1.4e-19  Score=171.64  Aligned_cols=185  Identities=21%  Similarity=0.191  Sum_probs=141.4

Q ss_pred             CEEEecCCCCCcCCcc-ccCCCCCcEEEeecccCccc---ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEecee
Q 047084            1 KVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKII---PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQ   76 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~   76 (437)
                      ++|+|++|.++.+|.. +.++++|++|++++|.+..+   |..+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus        31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~  110 (306)
T 2z66_A           31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH  110 (306)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT
T ss_pred             CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCC
Confidence            5789999999888875 68899999999999988644   6778889999999999888888988899999999999999


Q ss_pred             eccccccccccccccccCCccCcEEEeecCC-----hHhHhhccchHhc---cccccc--CCchhhcCCCCCeEEeeCCc
Q 047084           77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKT--IPPPLAADRSTKKARFRSHE  146 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~--ip~~~~~l~~L~~L~l~~N~  146 (437)
                      |.+++..    .+..+..+++|++|++++|.     +..+..+..|+.+   +|.+..  +|..+..+++|++|++++|+
T Consensus       111 n~l~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          111 SNLKQMS----EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             SEEESST----TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             Ccccccc----cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            9988432    01468889999999999887     2334444444444   566643  78888899999999999999


Q ss_pred             CCCCCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccC
Q 047084          147 VDADSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIG  189 (437)
Q Consensus       147 l~~~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~  189 (437)
                      +++..|..+    ++..+.+++|++..     +.....++.|++++|+++..
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            986555544    56677788888722     22234567889999988743

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=2.9e-19  Score=170.15  Aligned_cols=163  Identities=17%  Similarity=0.161  Sum_probs=81.0

Q ss_pred             CEEEecCCCCC-cCCccc--cCCCCCcEEEeecccCcccChhhhcc-----cCCCEEEccCCcccccc-hhhcCCcCCcE
Q 047084            1 KVLDLEDAPVD-YLPEGV--GNLFNLHYLSVKNTKVKIIPKSIGNL-----LGLETLDLKNTLVRELP-VEIRNLKRLRY   71 (437)
Q Consensus         1 ~~L~L~~n~l~-~lp~~~--~~l~~L~~L~L~~n~l~~lp~~~~~l-----~~L~~L~l~~~~~~~lp-~~~~~L~~L~~   71 (437)
                      ++|+|++|.++ .+|..+  .++++|++|+|++|++..+|..++.+     ++|++|++++|.++.++ ..++++++|++
T Consensus        98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  177 (312)
T 1wwl_A           98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST  177 (312)
T ss_dssp             CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred             cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence            35566666653 445544  55666666666666665445555555     56666666655555554 34556666666


Q ss_pred             Eeceeeccccccccccccccc--cCCccCcEEEeecCChHhH-----------hhccchHhcccccccCC--chhhcCCC
Q 047084           72 LMVYQYNYTAGFAAAKLHEGF--GSLTNLQKLCIIEADSEAL-----------KELMKLRQLRNLLKTIP--PPLAADRS  136 (437)
Q Consensus        72 L~l~~n~l~~~~~~~~lp~~~--~~l~~L~~L~l~~n~~~~~-----------~~L~~L~~l~n~~~~ip--~~~~~l~~  136 (437)
                      |++++|++.+..   .+|..+  +.+++|++|++++|....+           ++|+.|...+|.+...+  ..+..+++
T Consensus       178 L~Ls~N~l~~~~---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          178 LDLSDNPELGER---GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             EECCSCTTCHHH---HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             EECCCCCcCcch---HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            666666554321   123233  5556666666666652211           12222222234443322  23334455


Q ss_pred             CCeEEeeCCcCCCCCCCCc--hhhhhhcCCCCC
Q 047084          137 TKKARFRSHEVDADSPSPL--SFKDALVHPEQY  167 (437)
Q Consensus       137 L~~L~l~~N~l~~~~p~~~--~~~~~~l~~n~l  167 (437)
                      |++|+|++|+|+ .+|..+  ++..+.+++|++
T Consensus       255 L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          255 LNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRL  286 (312)
T ss_dssp             CCEEECTTSCCS-SCCSSCCSEEEEEECCSSCC
T ss_pred             CCEEECCCCccC-hhhhhccCCceEEECCCCCC
Confidence            555555555555 444433  333444444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.78  E-value=1.9e-20  Score=194.37  Aligned_cols=159  Identities=9%  Similarity=0.021  Sum_probs=83.4

Q ss_pred             CCchhhcCCCCCeEEeeCCcCCCCCC-CCc----hhhhhhcCCCCC-----CCCchhccceeeecCCCCccc-------C
Q 047084          127 IPPPLAADRSTKKARFRSHEVDADSP-SPL----SFKDALVHPEQY-----RSSEDAEMEEEWDLEPGDVTI-------G  189 (437)
Q Consensus       127 ip~~~~~l~~L~~L~l~~N~l~~~~p-~~~----~~~~~~l~~n~l-----~~~~~~~~~~~L~L~~n~l~~-------~  189 (437)
                      +|..+..+++|++|++++|++++..| ..+    ++..+.++.|.+     ..+.....++.|++++|+++.       .
T Consensus       391 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  470 (606)
T 3vq2_A          391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA  470 (606)
T ss_dssp             ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc
Confidence            33334444445555555555443333 111    334444555554     112223345666666666653       1


Q ss_pred             CCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHH----H
Q 047084          190 DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAV----Y  265 (437)
Q Consensus       190 ~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~----~  265 (437)
                      ....+..+.++.|.+....+.+.. -..++..++++.|.+++..+..+.....++.+++++|.+...-.....+.    .
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~  549 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF  549 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCE
T ss_pred             cCCCCCEEECCCCcCCccChhhhc-ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcE
Confidence            114455566666655554332211 12234455677777777777778888888888888887763322222221    1


Q ss_pred             -hHHcCceEEcCceEEEeecCC
Q 047084          266 -ALTEGPWVIFGHYLTVQPWTP  286 (437)
Q Consensus       266 -vl~~~pw~~~~~~l~l~~w~~  286 (437)
                       .+.++||.+++....+..|..
T Consensus       550 l~l~~N~~~c~c~~~~~~~~l~  571 (606)
T 3vq2_A          550 FNLTNNSVACICEHQKFLQWVK  571 (606)
T ss_dssp             EECCSCCCCCSSTTHHHHTTTT
T ss_pred             EEccCCCcccCCccHHHHHHHH
Confidence             256777777766555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=2e-19  Score=179.57  Aligned_cols=226  Identities=16%  Similarity=0.225  Sum_probs=161.3

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeecc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l   79 (437)
                      .++.+++.++++|..+.  .+++.|+|++|+|..++ ..|.++++|++|+|++|.+..++. .|.++++|++|+|++|++
T Consensus        47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            56778888999998775  68999999999998665 678999999999999998888875 599999999999999999


Q ss_pred             ccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---c-cccccCCc-hhhcCCCCCeEEeeCCcCCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---R-NLLKTIPP-PLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~-n~~~~ip~-~~~~l~~L~~L~l~~N~l~~  149 (437)
                      ++..     +..|..+++|++|++++|..     ..+..+..|+.+   + +.++.++. .+.++++|++|+|++|+++ 
T Consensus       125 ~~~~-----~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          125 TTIP-----NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             SSCC-----TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred             CeeC-----HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence            8432     34689999999999999973     234445555544   3 56677775 6789999999999999999 


Q ss_pred             CCCCCc---hhhhhhcCCCCCC-----CCchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecC
Q 047084          150 DSPSPL---SFKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLG  221 (437)
Q Consensus       150 ~~p~~~---~~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~  221 (437)
                      .+|...   ++..+.+++|++.     .+.....++.|+|++|+++......+..                   ..++..
T Consensus       199 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------l~~L~~  259 (440)
T 3zyj_A          199 EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN-------------------LQSLVE  259 (440)
T ss_dssp             SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT-------------------CTTCCE
T ss_pred             cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC-------------------CCCCCE
Confidence            566422   4556667777762     2233444566777777776332211100                   012223


Q ss_pred             CCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084          222 RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       222 ~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                      ++++.|.++...+..+.....++.+++++|.|.
T Consensus       260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             EECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            345555555555556667777888888766554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=5e-19  Score=177.29  Aligned_cols=183  Identities=18%  Similarity=0.246  Sum_probs=132.8

Q ss_pred             CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.++.+ |..|.++++|++|+|++|.|..++ ..|.++++|++|+|++|.+..+|.. |.++++|++|++++|
T Consensus        78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  157 (452)
T 3zyi_A           78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN  157 (452)
T ss_dssp             SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred             cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence            5788888888777 446788888888998888887555 6678888888888888888888775 788888888988888


Q ss_pred             cccccccccccc-ccccCCccCcEEEeecCC------hHhHh---hccchHhcccccccCCchhhcCCCCCeEEeeCCcC
Q 047084           78 NYTAGFAAAKLH-EGFGSLTNLQKLCIIEAD------SEALK---ELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEV  147 (437)
Q Consensus        78 ~l~~~~~~~~lp-~~~~~l~~L~~L~l~~n~------~~~~~---~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l  147 (437)
                      .++      .+| ..|..+++|+.|++++|+      ...+.   +|+.|...+|.+..+| .+..+++|++|+|++|++
T Consensus       158 ~l~------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          158 PIE------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             CCC------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred             Ccc------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence            887      334 357888888888888754      22333   3444444467777776 467788888888888888


Q ss_pred             CCCCCCCc----hhhhhhcCCCCCC-----CCchhccceeeecCCCCcccCC
Q 047084          148 DADSPSPL----SFKDALVHPEQYR-----SSEDAEMEEEWDLEPGDVTIGD  190 (437)
Q Consensus       148 ~~~~p~~~----~~~~~~l~~n~l~-----~~~~~~~~~~L~L~~n~l~~~~  190 (437)
                      ++..|..+    ++..+.+++|++.     .+.....++.|+|++|+++...
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence            86545443    5566777788772     1233445677888888887443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=6.7e-20  Score=173.88  Aligned_cols=229  Identities=12%  Similarity=0.105  Sum_probs=167.4

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCccccc---chhhcCCcCCcEEecee
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVREL---PVEIRNLKRLRYLMVYQ   76 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~l---p~~~~~L~~L~~L~l~~   76 (437)
                      +.++.+++.++++|..+.  ++|++|++++|.++.+|.. +.++++|++|++++|.++.+   |..+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            367899999999998764  6899999999999988865 68899999999998888765   67788999999999999


Q ss_pred             eccccccccccccccccCCccCcEEEeecCCh------HhHhhccchHhc---ccccc-cCCchhhcCCCCCeEEeeCCc
Q 047084           77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADS------EALKELMKLRQL---RNLLK-TIPPPLAADRSTKKARFRSHE  146 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~------~~~~~L~~L~~l---~n~~~-~ip~~~~~l~~L~~L~l~~N~  146 (437)
                      |.++      .+|..+..+++|++|++++|..      ..+..+..|+.+   +|.+. ..|..+..+++|++|++++|.
T Consensus        88 n~i~------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           88 NGVI------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             CSEE------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             Cccc------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            9988      5688899999999999999962      234444444444   55554 445678889999999999999


Q ss_pred             CCC-CCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEE
Q 047084          147 VDA-DSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVV  216 (437)
Q Consensus       147 l~~-~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~  216 (437)
                      +++ .+|..+    ++..+.+++|++..     +.....++.|+|++|+++.....          .+..         .
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~---------l  222 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF----------PYKC---------L  222 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG----------GGTT---------C
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh----------hccC---------c
Confidence            985 355544    56667778887721     22334567788888887632210          0000         1


Q ss_pred             EEecCCCcCHHHHHHHHHhcccCC-CceEEEEcCCcEEEEE
Q 047084          217 VKLLGRNIGYKVLCNRLKVMWHQI-HDFSVIDLENNYFLIR  256 (437)
Q Consensus       217 ~~l~~~~ls~n~l~~~l~~~w~~~-~~l~~l~l~~N~f~~~  256 (437)
                      .++..++++.|.+.+..+..+... ..++.+++++|.|...
T Consensus       223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            123334566666665555566655 4899999999998743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.78  E-value=1.4e-19  Score=187.18  Aligned_cols=233  Identities=18%  Similarity=0.168  Sum_probs=151.9

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.++.+|..+.  ++|++|++++|.|..+|.   .+++|++|++++|.++.+|.   .+++|++|++++|.++
T Consensus        43 ~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           43 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             CEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC
T ss_pred             cEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC
Confidence            467777777777777665  677777777777777765   46677777777777777776   5667777777777666


Q ss_pred             cccc--------------cccccccccCCccCcEEEeecCChHh----HhhccchHhcccccccCCchhhcCCCCCeEEe
Q 047084           81 AGFA--------------AAKLHEGFGSLTNLQKLCIIEADSEA----LKELMKLRQLRNLLKTIPPPLAADRSTKKARF  142 (437)
Q Consensus        81 ~~~~--------------~~~lp~~~~~l~~L~~L~l~~n~~~~----~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l  142 (437)
                      +...              +..+|..   +++|++|++++|....    +.+|+.|...+|.+..+|   ..+++|+.|++
T Consensus       115 ~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~L  188 (622)
T 3g06_A          115 HLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSV  188 (622)
T ss_dssp             CCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEEC
T ss_pred             CCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEEC
Confidence            3210              0011211   2455555555554222    233444444455555555   33478889999


Q ss_pred             eCCcCCCCCCCCc-hhhhhhcCCCCCCC-CchhccceeeecCCCCcccCC--CCCCCeEeechHHHhhhcccccceEEEE
Q 047084          143 RSHEVDADSPSPL-SFKDALVHPEQYRS-SEDAEMEEEWDLEPGDVTIGD--DGTMPTIKFSKRIQDKLIKPWQNSVVVK  218 (437)
Q Consensus       143 ~~N~l~~~~p~~~-~~~~~~l~~n~l~~-~~~~~~~~~L~L~~n~l~~~~--~~~lp~l~l~~n~l~~l~~~~~~~l~~~  218 (437)
                      ++|.|++ +|..+ ++..+.+++|.+.. ......++.|+|++|+++..+  ...+..+.++.|.+..++..     ..+
T Consensus       189 s~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~~-----~~~  262 (622)
T 3g06_A          189 SDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML-----PSG  262 (622)
T ss_dssp             CSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC-----CTT
T ss_pred             CCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCcc-----ccc
Confidence            9999884 55443 56667778888732 222345788999999998533  25677788888887766551     223


Q ss_pred             ecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084          219 LLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       219 l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                      +..+++++|.++ .++..+...+.++.+++++|.+.
T Consensus       263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred             CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence            445667788877 45677888899999999999876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=4.6e-19  Score=166.36  Aligned_cols=101  Identities=23%  Similarity=0.254  Sum_probs=45.9

Q ss_pred             EEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCc-cccc-chhhcCCcCCcEEeceee
Q 047084            2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTL-VREL-PVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~-~~~l-p~~~~~L~~L~~L~l~~n   77 (437)
                      +|++++|.++.+|. .|.++++|++|++++|.+..+ |..+.++++|++|++++|. ++.+ |..+..+++|++|++++|
T Consensus        36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n  115 (285)
T 1ozn_A           36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (285)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence            34444444444432 344444555555555544333 3344444555555554432 4444 223444555555555555


Q ss_pred             ccccccccccccccccCCccCcEEEeecCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~  107 (437)
                      .+++..     |..+..+++|++|++++|.
T Consensus       116 ~l~~~~-----~~~~~~l~~L~~L~l~~n~  140 (285)
T 1ozn_A          116 GLQELG-----PGLFRGLAALQYLYLQDNA  140 (285)
T ss_dssp             CCCCCC-----TTTTTTCTTCCEEECCSSC
T ss_pred             cCCEEC-----HhHhhCCcCCCEEECCCCc
Confidence            444221     3334444455555554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=2.5e-19  Score=179.51  Aligned_cols=227  Identities=15%  Similarity=0.221  Sum_probs=164.8

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeecc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l   79 (437)
                      .++.+++.++++|..+.  ++|++|+|++|.|..+ |..|.++++|++|++++|.+..++. .|.++++|++|+|++|++
T Consensus        58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            56778888999998765  6899999999999765 5779999999999999888888874 599999999999999999


Q ss_pred             ccccccccccccccCCccCcEEEeecCChH-----hHhhccchHhc---c-cccccCCc-hhhcCCCCCeEEeeCCcCCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALKELMKLRQL---R-NLLKTIPP-PLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~~L~~L~~l---~-n~~~~ip~-~~~~l~~L~~L~l~~N~l~~  149 (437)
                      ++..     +..|..+++|++|++++|...     .+..+..|+.+   + +.++.+|. .+..+++|++|+|++|++++
T Consensus       136 ~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          136 TVIP-----SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SBCC-----TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CccC-----hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            8432     345899999999999999832     34445555544   3 56777775 57899999999999999994


Q ss_pred             CCCCC---chhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecC
Q 047084          150 DSPSP---LSFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLG  221 (437)
Q Consensus       150 ~~p~~---~~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~  221 (437)
                       +|..   .++..+.+++|++..     +.....++.|+|++|+++......+..                   ..++..
T Consensus       211 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------l~~L~~  270 (452)
T 3zyi_A          211 -MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG-------------------LASLVE  270 (452)
T ss_dssp             -CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT-------------------CTTCCE
T ss_pred             -cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC-------------------CCCCCE
Confidence             5542   255667777887722     223345677888888876332211110                   012233


Q ss_pred             CCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEE
Q 047084          222 RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLI  255 (437)
Q Consensus       222 ~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~  255 (437)
                      ++++.|.++...+..+.....++.+++++|.|..
T Consensus       271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             EECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             EECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            3455565555555667777888889988887663

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.77  E-value=7.8e-20  Score=179.52  Aligned_cols=243  Identities=16%  Similarity=0.213  Sum_probs=126.3

Q ss_pred             CEEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      |+|++++|.++.+|.. +.++++|++|++++|.+..++ ..+..+++|++|++++|.++.+|+. ++++++|++|++++|
T Consensus        48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  127 (390)
T 3o6n_A           48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN  127 (390)
T ss_dssp             SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence            4567777777777664 466777777777777776554 3666777777777776666666543 677777777777777


Q ss_pred             cccccccccccccc-ccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           78 NYTAGFAAAKLHEG-FGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        78 ~l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      .++      .+|.. |+.+++|++|++++|.     +..+..++.|+.+   +|.+..++  +..+++|+.|++++|.++
T Consensus       128 ~l~------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          128 DLS------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CCC------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred             ccC------cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc
Confidence            776      34544 4667777777777765     2223333333333   45555443  445566666666666665


Q ss_pred             CCCCCCchhhhhhcCCCCCCCC--chhccceeeecCCCCcccCC----CCCCCeEeechHHHhhhcccccceEEEEecCC
Q 047084          149 ADSPSPLSFKDALVHPEQYRSS--EDAEMEEEWDLEPGDVTIGD----DGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGR  222 (437)
Q Consensus       149 ~~~p~~~~~~~~~l~~n~l~~~--~~~~~~~~L~L~~n~l~~~~----~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~  222 (437)
                      + ++...++..+.+++|.+...  .....++.|++++|+++...    ...+..+.++.|.+....+.... ...++..+
T Consensus       200 ~-~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L  277 (390)
T 3o6n_A          200 T-LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERL  277 (390)
T ss_dssp             E-EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEE
T ss_pred             c-cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEE
Confidence            2 22223444444555544111  11122344445554444111    13334444444443333211100 01122233


Q ss_pred             CcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084          223 NIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       223 ~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                      +++.|.++. ++..+...+.++.+++++|.+.
T Consensus       278 ~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~  308 (390)
T 3o6n_A          278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  308 (390)
T ss_dssp             ECCSSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             ECCCCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence            344444332 2223344556666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.77  E-value=2.2e-19  Score=183.05  Aligned_cols=79  Identities=20%  Similarity=0.284  Sum_probs=69.2

Q ss_pred             CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccc--cchhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRE--LPVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~--lp~~~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|+++.+ |..|.++++|++|+|++|+|..+|..  .+++|++|++++|.+..  +|..++++++|++|++++|
T Consensus        48 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           48 RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             CEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred             cEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence            6899999999888 66889999999999999999888876  89999999999888775  5678999999999999999


Q ss_pred             cccc
Q 047084           78 NYTA   81 (437)
Q Consensus        78 ~l~~   81 (437)
                      .+++
T Consensus       126 ~l~~  129 (520)
T 2z7x_B          126 HLEK  129 (520)
T ss_dssp             SCCG
T ss_pred             ccch
Confidence            8863

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=1.6e-19  Score=180.87  Aligned_cols=246  Identities=17%  Similarity=0.181  Sum_probs=173.8

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCccc-ccch-hhcCCcCCcEEeceeec
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVR-ELPV-EIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~-~lp~-~~~~L~~L~~L~l~~n~   78 (437)
                      .++.+++.++.+|. +  .++|++|+|++|.+..+ |..+.++++|++|++++|.+. .+++ .|.++++|++|++++|.
T Consensus        14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ   90 (455)
T ss_dssp             EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred             ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence            57788889999997 3  37899999999999765 678999999999999977664 6654 59999999999999999


Q ss_pred             cccccccccccccccCCccCcEEEeecCChHh-------HhhccchHhc---ccccccC-Cch-hhcCCCCCeEEeeCCc
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA-------LKELMKLRQL---RNLLKTI-PPP-LAADRSTKKARFRSHE  146 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-------~~~L~~L~~l---~n~~~~i-p~~-~~~l~~L~~L~l~~N~  146 (437)
                      +++..     |..|+++++|++|++++|....       +..+..|+.+   +|.+..+ |.. +..+++|++|++++|+
T Consensus        91 l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           91 FLQLE-----TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             TCEEC-----TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             cCccC-----hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            98543     7789999999999999998432       4444555544   6666665 555 7899999999999999


Q ss_pred             CCCCCCCCch--------------------------------------hhhhhcCCCCCCCCc-----------------
Q 047084          147 VDADSPSPLS--------------------------------------FKDALVHPEQYRSSE-----------------  171 (437)
Q Consensus       147 l~~~~p~~~~--------------------------------------~~~~~l~~n~l~~~~-----------------  171 (437)
                      +++..|..+.                                      +..+.+++|.+....                 
T Consensus       166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  245 (455)
T 3v47_A          166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI  245 (455)
T ss_dssp             BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence            9977665442                                      233334444331000                 


Q ss_pred             ---------------------------hhccceeeecCCCCcccCC------CCCCCeEeechHHHhhhcccccceEEEE
Q 047084          172 ---------------------------DAEMEEEWDLEPGDVTIGD------DGTMPTIKFSKRIQDKLIKPWQNSVVVK  218 (437)
Q Consensus       172 ---------------------------~~~~~~~L~L~~n~l~~~~------~~~lp~l~l~~n~l~~l~~~~~~~l~~~  218 (437)
                                                 ....++.|++++|+++...      ...+..+.++.|.+....+..... ..+
T Consensus       246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~  324 (455)
T 3v47_A          246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-LTH  324 (455)
T ss_dssp             CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTT
T ss_pred             eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-ccc
Confidence                                       0012445666666665222      245666777777766554322111 123


Q ss_pred             ecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEE
Q 047084          219 LLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIR  256 (437)
Q Consensus       219 l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~  256 (437)
                      +..++++.|.+....+..+.....++.+++++|.+...
T Consensus       325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  362 (455)
T 3v47_A          325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL  362 (455)
T ss_dssp             CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE
T ss_pred             CCEEECCCCccCCcChhHhcCcccCCEEECCCCccccc
Confidence            44566777777766677788888888888888887654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.77  E-value=2.5e-19  Score=172.08  Aligned_cols=222  Identities=14%  Similarity=0.210  Sum_probs=144.8

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCccccc-chhhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~n~   78 (437)
                      ++++++++.++.+|..+.  ++|++|++++|.+..++ ..+.++++|++|++++|.++.+ |..|+++++|++|++++|.
T Consensus        36 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           36 RVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred             CEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence            467888888888887764  58888999988887664 4788888899999987777776 5568888899999998888


Q ss_pred             cccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---ccccc---cCCchhhcCCCCCeEEeeCCcC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLK---TIPPPLAADRSTKKARFRSHEV  147 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~---~ip~~~~~l~~L~~L~l~~N~l  147 (437)
                      ++      .+|..+.  ++|++|++++|..     ..+..+..|+.+   +|.+.   ..|..+..+ +|++|++++|++
T Consensus       114 l~------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          114 LV------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CC------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CC------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            87      4566554  7888888888862     234444444444   45443   345556666 788888888888


Q ss_pred             CCCCCCCc--hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEec
Q 047084          148 DADSPSPL--SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLL  220 (437)
Q Consensus       148 ~~~~p~~~--~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~  220 (437)
                      ++ +|..+  ++..+.+++|.+..     +.....++.|+|++|+++......+          ..         ..++.
T Consensus       185 ~~-l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~----------~~---------l~~L~  244 (332)
T 2ft3_A          185 TG-IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL----------SF---------LPTLR  244 (332)
T ss_dssp             SS-CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG----------GG---------CTTCC
T ss_pred             Cc-cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh----------hC---------CCCCC
Confidence            73 55543  55666777777622     2233455778888887763322100          00         01122


Q ss_pred             CCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084          221 GRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       221 ~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                      .++++.|.++ .++..+...+.++.+++++|.+.
T Consensus       245 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             EEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence            2334444443 23444556677777777777665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=8.3e-20  Score=189.32  Aligned_cols=139  Identities=17%  Similarity=0.295  Sum_probs=75.6

Q ss_pred             EEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            2 VLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      +|++++|.++.+|+. +.++++|++|+|++|.+..++ ..|+++++|++|++++|.++.+|+. |+++++|++|+|++|.
T Consensus        55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  134 (597)
T 3oja_B           55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND  134 (597)
T ss_dssp             EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC
Confidence            456666666666554 355666666666666665443 3566666666666665555555543 4666666666666666


Q ss_pred             ccccccccccccc-ccCCccCcEEEeecCC-----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           79 YTAGFAAAKLHEG-FGSLTNLQKLCIIEAD-----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        79 l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~-----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      ++      .+|.. |+.+++|++|++++|.     +..+..+..|+.+   +|.+..++  +..+++|+.|++++|.++
T Consensus       135 l~------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          135 LS------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CC------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred             CC------CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc
Confidence            65      23333 4566666666666664     2223333333333   44444443  344455555555555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.77  E-value=3.6e-19  Score=171.79  Aligned_cols=137  Identities=20%  Similarity=0.311  Sum_probs=84.7

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.+..+|. +..+++|++|++++|.+..+|. +..+++|++|++++|.+..+| .+.++++|++|++++|.++
T Consensus        47 ~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~  123 (347)
T 4fmz_A           47 TKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS  123 (347)
T ss_dssp             SEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC
T ss_pred             cEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc
Confidence            467777777777753 6777777777777777776665 777777777777777777665 4777777777777777776


Q ss_pred             cccccccccccccCCccCcEEEeecCC----hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEAD----SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      +.      +. +..+++|+.|++++|.    +..+..+..|+.+   ++.+..++. +..+++|++|++++|.++
T Consensus       124 ~~------~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          124 DI------SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             CC------GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred             Cc------hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc
Confidence            32      33 5666666666666663    1222222222222   333333333 445555555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.77  E-value=7.6e-20  Score=179.59  Aligned_cols=227  Identities=16%  Similarity=0.158  Sum_probs=102.0

Q ss_pred             CCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeeccccccccccccccccCCcc
Q 047084           20 LFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTN   97 (437)
Q Consensus        20 l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~   97 (437)
                      +.+|+.|++++|.++.+|+. +..+++|++|++++|.+..++. .|..+++|++|++++|.+++..     |..|+.+++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~  118 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-----PHVFQNVPL  118 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTT
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-----HHHhcCCCC
Confidence            44555555555555555543 3445555555555555555443 3555555555555555555321     333555555


Q ss_pred             CcEEEeecCChH-----hHhhccchHhc---ccccccCC-chhhcCCCCCeEEeeCCcCCCCCCCCc-hhhhhhcCCCCC
Q 047084           98 LQKLCIIEADSE-----ALKELMKLRQL---RNLLKTIP-PPLAADRSTKKARFRSHEVDADSPSPL-SFKDALVHPEQY  167 (437)
Q Consensus        98 L~~L~l~~n~~~-----~~~~L~~L~~l---~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~l~~n~l  167 (437)
                      |++|++++|...     .+..+..|+.+   +|.+..++ ..+..+++|++|++++|++++.-...+ ++..+.++.|.+
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence            555555555411     11222222222   34443333 334555555555555555553211111 233344445544


Q ss_pred             CCCchhccceeeecCCCCcccCCC---CCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceE
Q 047084          168 RSSEDAEMEEEWDLEPGDVTIGDD---GTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFS  244 (437)
Q Consensus       168 ~~~~~~~~~~~L~L~~n~l~~~~~---~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~  244 (437)
                      ........++.|++++|+++....   ..+..+.++.+.+.......   ...++..++++.|.+.+..+..+...+.++
T Consensus       199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  275 (390)
T 3o6n_A          199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL---NYPGLVEVDLSYNELEKIMYHPFVKMQRLE  275 (390)
T ss_dssp             SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGG---GCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred             cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHc---CCCCccEEECCCCcCCCcChhHccccccCC
Confidence            333333334555555555542211   23444444444443321100   011223334444544444444455555555


Q ss_pred             EEEcCCcEEE
Q 047084          245 VIDLENNYFL  254 (437)
Q Consensus       245 ~l~l~~N~f~  254 (437)
                      .+++++|.+.
T Consensus       276 ~L~L~~n~l~  285 (390)
T 3o6n_A          276 RLYISNNRLV  285 (390)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCcCc
Confidence            5555555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=3.7e-18  Score=158.99  Aligned_cols=180  Identities=19%  Similarity=0.239  Sum_probs=125.2

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      ++++++++.++.+|..+.  .+|+.|++++|.+..+|+ .+.++++|++|++++|.++.+|.. |.++++|++|++++|.
T Consensus        19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence            468889999988887665  578999999999887764 688899999999998888888876 5789999999999998


Q ss_pred             cccccccccccccccCCccCcEEEeecCCh-----HhHhhcc---chHhcccccccCCch-hhcCCCCCeEEeeCCcCCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELM---KLRQLRNLLKTIPPP-LAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~---~L~~l~n~~~~ip~~-~~~l~~L~~L~l~~N~l~~  149 (437)
                      +++..     +..|..+++|++|++++|..     ..+..+.   .|...+|.+..+|.. +..+++|++|++++|++++
T Consensus        97 l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           97 LQALP-----IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCCCC-----TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcCC-----HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            88432     34578889999999998862     2233333   333335666666654 6777888888888888874


Q ss_pred             CCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcc
Q 047084          150 DSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       150 ~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~  187 (437)
                      ..+..+    ++..+.++.|++..     +.....++.|+|++|.++
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            333222    34455555665511     112233455666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.76  E-value=2.2e-19  Score=184.87  Aligned_cols=269  Identities=15%  Similarity=0.161  Sum_probs=173.1

Q ss_pred             CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccc--hhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP--VEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp--~~~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.++.+ |..|.++++|++|+|++|.|..+|..  .+++|++|++++|.+..+|  ..|+++++|++|++++|
T Consensus        79 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n  156 (562)
T 3a79_B           79 RVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA  156 (562)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred             cEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence            6899999999888 55789999999999999999989877  8999999999988888765  67999999999999999


Q ss_pred             cccccccccc---------------------ccccc--------------------------cCCccCcEEEeecCC---
Q 047084           78 NYTAGFAAAK---------------------LHEGF--------------------------GSLTNLQKLCIIEAD---  107 (437)
Q Consensus        78 ~l~~~~~~~~---------------------lp~~~--------------------------~~l~~L~~L~l~~n~---  107 (437)
                      .+++.. ...                     .|..+                          ..+++|+.|++++|.   
T Consensus       157 ~l~~~~-~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  235 (562)
T 3a79_B          157 KFRQLD-LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC  235 (562)
T ss_dssp             BCCTTT-TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH
T ss_pred             ccccCc-hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccccc
Confidence            887321 000                     01111                          122333334433331   


Q ss_pred             ------hHhHh------------------------------hccchHhccccc-ccCCchh-------------------
Q 047084          108 ------SEALK------------------------------ELMKLRQLRNLL-KTIPPPL-------------------  131 (437)
Q Consensus       108 ------~~~~~------------------------------~L~~L~~l~n~~-~~ip~~~-------------------  131 (437)
                            +..+.                              +|+.|...+|.+ +.+|..+                   
T Consensus       236 ~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~  315 (562)
T 3a79_B          236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ  315 (562)
T ss_dssp             HHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC
T ss_pred             chHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc
Confidence                  00000                              222222223333 3555443                   


Q ss_pred             ----------------------------------hcCCCCCeEEeeCCcCCCCCCCCc----hhhhhhcCCCCCCC----
Q 047084          132 ----------------------------------AADRSTKKARFRSHEVDADSPSPL----SFKDALVHPEQYRS----  169 (437)
Q Consensus       132 ----------------------------------~~l~~L~~L~l~~N~l~~~~p~~~----~~~~~~l~~n~l~~----  169 (437)
                                                        ..+++|++|++++|++++.+|..+    ++..+.++.|++..    
T Consensus       316 ~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  395 (562)
T 3a79_B          316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV  395 (562)
T ss_dssp             CCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH
T ss_pred             eeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc
Confidence                                              567889999999999997677654    56678888888843    


Q ss_pred             ---CchhccceeeecCCCCccc-CCC------CCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccC
Q 047084          170 ---SEDAEMEEEWDLEPGDVTI-GDD------GTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQ  239 (437)
Q Consensus       170 ---~~~~~~~~~L~L~~n~l~~-~~~------~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~  239 (437)
                         +.....++.|++++|+++. .+.      ..+..+.++.|.+.+..+....   .++..+++++|.++. ++.....
T Consensus       396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~~-ip~~~~~  471 (562)
T 3a79_B          396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIMS-IPKDVTH  471 (562)
T ss_dssp             HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---TTCSEEECCSSCCCC-CCTTTTS
T ss_pred             hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc---CcCCEEECCCCcCcc-cChhhcC
Confidence               2233456889999999874 221      4566677777776543332110   244456677777764 3333337


Q ss_pred             CCceEEEEcCCcEEEEEeCCh--hhHH---Hh-HHcCceEEcCc
Q 047084          240 IHDFSVIDLENNYFLIRLKSP--EDAV---YA-LTEGPWVIFGH  277 (437)
Q Consensus       240 ~~~l~~l~l~~N~f~~~f~~~--~d~~---~v-l~~~pw~~~~~  277 (437)
                      ...++.+++++|.+.. ++..  ..+.   .+ +.++||.+++.
T Consensus       472 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          472 LQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             SCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            7889999999998873 2221  1111   11 56677776553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.4e-19  Score=187.64  Aligned_cols=240  Identities=16%  Similarity=0.137  Sum_probs=149.5

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.++.+|+ .|.++++|++|+|++|.+..+|+ .++++++|++|++++|.++.+|.. |+++++|++|++++|
T Consensus        78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N  157 (597)
T 3oja_B           78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN  157 (597)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence            578888888877755 67888888888888888866654 467788888888888888888776 578888888888888


Q ss_pred             ccccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSP  152 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p  152 (437)
                      .+++..     |..|+.+++|++|++++|..     ..+++|..|...+|.+..+    ...++|+.|++++|.++. +|
T Consensus       158 ~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~-~~  227 (597)
T 3oja_B          158 NLERIE-----DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINV-VR  227 (597)
T ss_dssp             CCCBCC-----TTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCE-EE
T ss_pred             cCCCCC-----hhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc----cCCchhheeeccCCcccc-cc
Confidence            887543     55678888888888888863     3334444444444544433    344578888888888873 22


Q ss_pred             CC--chhhhhhcCCCCCCC---CchhccceeeecCCCCcccCC------CCCCCeEeechHHHhhhcccccceEEEEecC
Q 047084          153 SP--LSFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVTIGD------DGTMPTIKFSKRIQDKLIKPWQNSVVVKLLG  221 (437)
Q Consensus       153 ~~--~~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~~~~------~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~  221 (437)
                      ..  .++..+.+++|.+..   +.....++.|+|++|.++...      ...+..+.++.|.+..++.....  ..++..
T Consensus       228 ~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--l~~L~~  305 (597)
T 3oja_B          228 GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP--IPTLKV  305 (597)
T ss_dssp             CSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSC--CTTCCE
T ss_pred             cccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccccc--CCCCcE
Confidence            22  256667777777722   223344577888888876332      24455566666555544322110  112223


Q ss_pred             CCcCHHHHHHHHHhcccCCCceEEEEcCCcEE
Q 047084          222 RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYF  253 (437)
Q Consensus       222 ~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f  253 (437)
                      ++++.|.+.. ++..+.....++.+++++|.+
T Consensus       306 L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          306 LDLSHNHLLH-VERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             EECCSSCCCC-CGGGHHHHTTCSEEECCSSCC
T ss_pred             EECCCCCCCc-cCcccccCCCCCEEECCCCCC
Confidence            3444444432 222333444555555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.76  E-value=3e-19  Score=192.41  Aligned_cols=148  Identities=18%  Similarity=0.183  Sum_probs=100.2

Q ss_pred             CEEEecCCCCCcC-CccccCCCCCcEEEeecccC-ccc-ChhhhcccCCCEEEccCCccccc-chhhcCCcCCcEEecee
Q 047084            1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKV-KII-PKSIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQ   76 (437)
Q Consensus         1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l-~~l-p~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~   76 (437)
                      ++|||++|.++.+ |..|.++++|++|+|++|.. +.+ |.+|.++++|++|+|++|.+..+ |..|+++++|++|+|++
T Consensus        27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  106 (844)
T 3j0a_A           27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF  106 (844)
T ss_dssp             CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred             CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence            5788888888776 55778888888888888853 566 56788888888888887776665 55688888888888888


Q ss_pred             ecccccccccccccc--ccCCccCcEEEeecCCh------HhHhhccchHhc---cccc-ccCCchhhcC--CCCCeEEe
Q 047084           77 YNYTAGFAAAKLHEG--FGSLTNLQKLCIIEADS------EALKELMKLRQL---RNLL-KTIPPPLAAD--RSTKKARF  142 (437)
Q Consensus        77 n~l~~~~~~~~lp~~--~~~l~~L~~L~l~~n~~------~~~~~L~~L~~l---~n~~-~~ip~~~~~l--~~L~~L~l  142 (437)
                      |.+++..     |..  ++++++|++|++++|..      ..+.++++|+.+   +|.+ +..|..+..+  ++|+.|++
T Consensus       107 n~l~~~~-----~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          107 CGLSDAV-----LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             CCCSSCC-----STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             CCCCccc-----ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            8887532     333  67778888888887762      334555555544   3443 3344555544  56666666


Q ss_pred             eCCcCCCCCCC
Q 047084          143 RSHEVDADSPS  153 (437)
Q Consensus       143 ~~N~l~~~~p~  153 (437)
                      +.|.+.+..|.
T Consensus       182 ~~n~l~~~~~~  192 (844)
T 3j0a_A          182 AANSLYSRVSV  192 (844)
T ss_dssp             CCSBSCCCCCC
T ss_pred             CCCcccccccc
Confidence            66666654443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=5.4e-19  Score=165.11  Aligned_cols=229  Identities=15%  Similarity=0.193  Sum_probs=139.6

Q ss_pred             EEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeeccc
Q 047084            3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~   80 (437)
                      .+.++..+.++|..+.  .+|++|++++|.+..++. .+.++++|++|++++|.+..++. .+.++++|++|++++|.++
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            4555666777776654  467788888888766654 67777888888888777777665 4777888888888888777


Q ss_pred             cccccccccccccCCccCcEEEeecCChH-----hHhhccchHh---ccccccc--CCchhhcCCCCCeEEeeCCcCCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALKELMKLRQ---LRNLLKT--IPPPLAADRSTKKARFRSHEVDAD  150 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~~L~~L~~---l~n~~~~--ip~~~~~l~~L~~L~l~~N~l~~~  150 (437)
                      +..     +..|.++++|++|++++|...     .+..+..|+.   .+|.+..  +|..+..+++|++|++++|++++.
T Consensus        90 ~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           90 SLA-----LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             EEC-----TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             ccC-----hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            432     355777788888888777622     1222333333   3455544  677888888888888888888854


Q ss_pred             CCCCchhhhhhcCCCCCCCCchhccc-eeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHH
Q 047084          151 SPSPLSFKDALVHPEQYRSSEDAEME-EEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVL  229 (437)
Q Consensus       151 ~p~~~~~~~~~l~~n~l~~~~~~~~~-~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l  229 (437)
                      .+..+.....+            ..+ ..|++++|+++......+..                    .++..++++.|.+
T Consensus       165 ~~~~~~~l~~L------------~~l~l~L~ls~n~l~~~~~~~~~~--------------------~~L~~L~L~~n~l  212 (276)
T 2z62_A          165 YCTDLRVLHQM------------PLLNLSLDLSLNPMNFIQPGAFKE--------------------IRLKELALDTNQL  212 (276)
T ss_dssp             CGGGGHHHHTC------------TTCCEEEECCSSCCCEECTTSSCS--------------------CCEEEEECCSSCC
T ss_pred             CHHHhhhhhhc------------cccceeeecCCCcccccCccccCC--------------------CcccEEECCCCce
Confidence            44333221100            001 14566666665222111100                    0122233444544


Q ss_pred             HHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHHHhHHcC
Q 047084          230 CNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEG  270 (437)
Q Consensus       230 ~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~~vl~~~  270 (437)
                      +...+..+.....++.+++++|.+....+....+..++...
T Consensus       213 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~  253 (276)
T 2z62_A          213 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN  253 (276)
T ss_dssp             SCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred             eecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHhc
Confidence            44444556677889999999999886665555555544433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.76  E-value=9.5e-19  Score=175.26  Aligned_cols=191  Identities=13%  Similarity=0.123  Sum_probs=128.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.++.+| .+..+++|++|++++|.+..+|  ++.+++|++|++++|.++.+|  ++++++|++|++++|+++
T Consensus        45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~  119 (457)
T 3bz5_A           45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLT  119 (457)
T ss_dssp             CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCS
T ss_pred             CEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCC
Confidence            57899999998887 6888999999999999998776  788999999999988888875  888999999999999888


Q ss_pred             cccccccccccccCCccCcEEEeecCChHhH--hhccchHhc---cc-ccccCCchhhcCCCCCeEEeeCCcCCCCCCC-
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL--KELMKLRQL---RN-LLKTIPPPLAADRSTKKARFRSHEVDADSPS-  153 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~--~~L~~L~~l---~n-~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~-  153 (437)
                      +      +|  ++.+++|++|++++|+...+  ..+..|+.+   +| .++.+  .+..+++|++|++++|++++ +|- 
T Consensus       120 ~------l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~l~  188 (457)
T 3bz5_A          120 K------LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LDVS  188 (457)
T ss_dssp             C------CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CCCT
T ss_pred             e------ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-eccc
Confidence            3      33  77888888888888874332  222333322   34 44555  35667777777777777774 331 


Q ss_pred             -CchhhhhhcCCCCCCC--CchhccceeeecCCCCcccCCC---CCCCeEeechHHHhhh
Q 047084          154 -PLSFKDALVHPEQYRS--SEDAEMEEEWDLEPGDVTIGDD---GTMPTIKFSKRIQDKL  207 (437)
Q Consensus       154 -~~~~~~~~l~~n~l~~--~~~~~~~~~L~L~~n~l~~~~~---~~lp~l~l~~n~l~~l  207 (437)
                       ...+..+.++.|++..  +.....++.|++++|+++..+.   ..+..+.++.|.+.+.
T Consensus       189 ~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          189 QNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             TCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC
T ss_pred             cCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCc
Confidence             1134455566666622  2223334556666666664332   2344455555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=1.7e-19  Score=189.84  Aligned_cols=278  Identities=16%  Similarity=0.163  Sum_probs=140.0

Q ss_pred             CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCcc-cChhhhcccCCCEEEccCCccc------ccch----hhcCCcC
Q 047084            1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKI-IPKSIGNLLGLETLDLKNTLVR------ELPV----EIRNLKR   68 (437)
Q Consensus         1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~~~~~------~lp~----~~~~L~~   68 (437)
                      ++|++++|.+..++ ..+.++++|++|++++|.+.. .|..+.++++|++|+++++..+      .+|.    .+..+++
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~  330 (680)
T 1ziw_A          251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC  330 (680)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred             CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence            45677777776554 356777777777777777643 3445555666666666543322      2332    3555666


Q ss_pred             CcEEeceeeccccccccccccccccCCccCcEEEeecCC---------------------------------hHhHhhcc
Q 047084           69 LRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD---------------------------------SEALKELM  115 (437)
Q Consensus        69 L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~---------------------------------~~~~~~L~  115 (437)
                      |++|++++|.+++..     |..|.++++|++|++++|.                                 +..+..+.
T Consensus       331 L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  405 (680)
T 1ziw_A          331 LEHLNMEDNDIPGIK-----SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG  405 (680)
T ss_dssp             CCEEECCSCCBCCCC-----TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCEEECCCCccCCCC-----hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence            666666666665432     3345555555555554442                                 01111111


Q ss_pred             chHhc---cccc-ccCC-chhhcCCCCCeEEeeCCcCCC--------------------------CCCCCc----hhhhh
Q 047084          116 KLRQL---RNLL-KTIP-PPLAADRSTKKARFRSHEVDA--------------------------DSPSPL----SFKDA  160 (437)
Q Consensus       116 ~L~~l---~n~~-~~ip-~~~~~l~~L~~L~l~~N~l~~--------------------------~~p~~~----~~~~~  160 (437)
                      .|+.+   +|.+ +.+| ..+..+++|++|++++|++++                          .+|..+    ++..+
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence            11111   2222 1222 223333333333333333321                          222222    23344


Q ss_pred             hcCCCCCCC-----CchhccceeeecCCCCcccC--------------CCCCCCeEeechHHHhhhcccccceEEEEecC
Q 047084          161 LVHPEQYRS-----SEDAEMEEEWDLEPGDVTIG--------------DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLG  221 (437)
Q Consensus       161 ~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~--------------~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~  221 (437)
                      .+++|++..     +.....++.|+|++|+++..              ....+..+.++.|.+..++.... .-..++..
T Consensus       486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~-~~l~~L~~  564 (680)
T 1ziw_A          486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF-KDLFELKI  564 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCE
T ss_pred             ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc-ccccCcce
Confidence            455555511     12233345566666666521              12344555666655554433210 01123444


Q ss_pred             CCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhHH----H----hHHcCceEEcCce-EEEeecCC
Q 047084          222 RNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAV----Y----ALTEGPWVIFGHY-LTVQPWTP  286 (437)
Q Consensus       222 ~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~~----~----vl~~~pw~~~~~~-l~l~~w~~  286 (437)
                      ++++.|.++...+.++.....++.+++++|.+...  ....+.    .    .+.++||.+++.. ..+..|..
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~  636 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV--EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN  636 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC--CHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc--ChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence            56777777766666777788888888888876532  111111    1    1678999999875 56666753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.75  E-value=2.1e-19  Score=179.89  Aligned_cols=74  Identities=26%  Similarity=0.355  Sum_probs=41.2

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      +|++++|.++.+| .++++++|++|++++|++..+|..+   .+|++|++++|.+..+| +++++++|++|++++|.++
T Consensus       135 ~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          135 YLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             EEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred             EEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC
Confidence            4555555555555 3555555666666655555454322   35555555555555555 3556666666666666555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=2.5e-18  Score=161.33  Aligned_cols=217  Identities=12%  Similarity=0.138  Sum_probs=142.3

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCccccc-chhhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~n~   78 (437)
                      ++++.+++.++.+|..+  .++|++|++++|.+..++ ..+.++++|++|++++|.+..+ |..+.++++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            36889999999999765  468999999999998777 5688999999999998888877 5679999999999999997


Q ss_pred             -cccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---ccccccCCc-hhhcCCCCCeEEeeCCcCC
Q 047084           79 -YTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLKTIPP-PLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        79 -l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~~ip~-~~~~l~~L~~L~l~~N~l~  148 (437)
                       ++...     |..+..+++|++|++++|..     ..+..+..|+.+   +|.+..+|. .+..+++|++|++++|+++
T Consensus        92 ~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A           92 QLRSVD-----PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             TCCCCC-----TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CccccC-----HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence             76332     67789999999999999862     222233333332   445555543 3555666666666666665


Q ss_pred             CCCCCCchhhhhhcCCCCCCCCchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHH
Q 047084          149 ADSPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKV  228 (437)
Q Consensus       149 ~~~p~~~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~  228 (437)
                      +..+..+               .....++.|++++|+++...+..+..          +         .++..++++.|.
T Consensus       167 ~~~~~~~---------------~~l~~L~~L~l~~n~l~~~~~~~~~~----------l---------~~L~~L~l~~n~  212 (285)
T 1ozn_A          167 SVPERAF---------------RGLHSLDRLLLHQNRVAHVHPHAFRD----------L---------GRLMTLYLFANN  212 (285)
T ss_dssp             EECTTTT---------------TTCTTCCEEECCSSCCCEECTTTTTT----------C---------TTCCEEECCSSC
T ss_pred             ccCHHHh---------------cCccccCEEECCCCcccccCHhHccC----------c---------ccccEeeCCCCc
Confidence            3222111               11233455666666665221111100          0         011222334444


Q ss_pred             HHHHHHhcccCCCceEEEEcCCcEEEEEeC
Q 047084          229 LCNRLKVMWHQIHDFSVIDLENNYFLIRLK  258 (437)
Q Consensus       229 l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~  258 (437)
                      ++...+..+.....++.+++++|.|.....
T Consensus       213 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          213 LSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             CCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            444344456677889999999999875433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.75  E-value=4.9e-19  Score=190.73  Aligned_cols=249  Identities=17%  Similarity=0.185  Sum_probs=163.8

Q ss_pred             CEEEecCCC-CCcC-CccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccc-cchh--hcCCcCCcEEec
Q 047084            1 KVLDLEDAP-VDYL-PEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRE-LPVE--IRNLKRLRYLMV   74 (437)
Q Consensus         1 ~~L~L~~n~-l~~l-p~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~-lp~~--~~~L~~L~~L~l   74 (437)
                      |+|+|++|. +..+ |..|.++++|++|+|++|.+..+ |..|+++++|++|++++|.+.. +|..  ++++++|++|++
T Consensus        51 ~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~L  130 (844)
T 3j0a_A           51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL  130 (844)
T ss_dssp             SEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEE
T ss_pred             eEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEEC
Confidence            689999995 5777 66899999999999999999754 7889999999999999777764 5665  899999999999


Q ss_pred             eeeccccccccccccccccCCccCcEEEeecCCh-----HhHhhc--cchHhc---cccc-ccCCchhhcCCC------C
Q 047084           75 YQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKEL--MKLRQL---RNLL-KTIPPPLAADRS------T  137 (437)
Q Consensus        75 ~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L--~~L~~l---~n~~-~~ip~~~~~l~~------L  137 (437)
                      ++|.+++..    .+..|+++++|++|++++|..     ..+..+  ..|+.+   .|.+ +..|..++.+++      |
T Consensus       131 s~N~l~~~~----~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L  206 (844)
T 3j0a_A          131 SKNQIRSLY----LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL  206 (844)
T ss_dssp             ESCCCCCCC----CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred             CCCcccccc----cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence            999998653    245799999999999999973     344333  334433   3433 455555555444      8


Q ss_pred             CeEEeeCCcCCCCCCCCc------------------------------------------hhhhhhcCCCCC-----CCC
Q 047084          138 KKARFRSHEVDADSPSPL------------------------------------------SFKDALVHPEQY-----RSS  170 (437)
Q Consensus       138 ~~L~l~~N~l~~~~p~~~------------------------------------------~~~~~~l~~n~l-----~~~  170 (437)
                      +.|++++|.+++.+|..+                                          ++..+.++.|.+     ..+
T Consensus       207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~  286 (844)
T 3j0a_A          207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF  286 (844)
T ss_dssp             SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred             eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence            899999998876555432                                          122233444444     112


Q ss_pred             chhccceeeecCCCCcccCCC------CCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceE
Q 047084          171 EDAEMEEEWDLEPGDVTIGDD------GTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFS  244 (437)
Q Consensus       171 ~~~~~~~~L~L~~n~l~~~~~------~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~  244 (437)
                      .....++.|+|++|+++...+      ..+..+.++.|.+..+.+.... ...++..++++.|.+....+..+.....++
T Consensus       287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  365 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY-GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ  365 (844)
T ss_dssp             SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS-SCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred             hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc-CCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence            223344556666666653322      3455556666655544332111 111333445566666555555666677777


Q ss_pred             EEEcCCcEEE
Q 047084          245 VIDLENNYFL  254 (437)
Q Consensus       245 ~l~l~~N~f~  254 (437)
                      .+++++|.+.
T Consensus       366 ~L~Ls~N~l~  375 (844)
T 3j0a_A          366 TLDLRDNALT  375 (844)
T ss_dssp             EEEEETCCSC
T ss_pred             EEECCCCCCC
Confidence            7777777643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=3.1e-18  Score=159.97  Aligned_cols=182  Identities=19%  Similarity=0.218  Sum_probs=140.9

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n   77 (437)
                      ++|++++|.++.++. .+.++++|++|++++|.+..+++ .+.++++|++|++++|.++.++. .+.++++|++|++++|
T Consensus        31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  110 (276)
T 2z62_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  110 (276)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence            589999999998876 78999999999999999987764 78899999999999888888774 5899999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCCh------HhHhhccchHhc---ccccccCC-chhhcCCCCC----eEEee
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS------EALKELMKLRQL---RNLLKTIP-PPLAADRSTK----KARFR  143 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~------~~~~~L~~L~~l---~n~~~~ip-~~~~~l~~L~----~L~l~  143 (437)
                      .+++..     +..++.+++|++|++++|..      ..+..+..|+.+   +|.+..++ ..+..+++|+    +|+++
T Consensus       111 ~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          111 NLASLE-----NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             CCCCST-----TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             CccccC-----chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            998543     33588999999999999973      345555555554   67776665 4566666666    89999


Q ss_pred             CCcCCCCCCCCc---hhhhhhcCCCCCCC-----CchhccceeeecCCCCcc
Q 047084          144 SHEVDADSPSPL---SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       144 ~N~l~~~~p~~~---~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~  187 (437)
                      +|++++..+..+   ++..+.+++|++..     +.....++.|++++|+++
T Consensus       186 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            999995444333   56677788888722     223345677888888887

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=6.2e-19  Score=185.54  Aligned_cols=148  Identities=22%  Similarity=0.251  Sum_probs=105.6

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.++.+|. .|.++++|++|+|++|.+..+ |..++++++|++|++++|.+..+|+. |+++++|++|++++|
T Consensus        28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n  107 (680)
T 1ziw_A           28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN  107 (680)
T ss_dssp             SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence            578888888888876 578888888888888888644 56788888888888888888888874 888888888888888


Q ss_pred             ccccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---ccccccCCc-hhh--cCCCCCeEEeeCCc
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLKTIPP-PLA--ADRSTKKARFRSHE  146 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~~ip~-~~~--~l~~L~~L~l~~N~  146 (437)
                      .+++..     |..|+++++|++|++++|..     ..+.++..|+.+   +|.+..++. .+.  .+++|++|++++|+
T Consensus       108 ~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          108 SIQKIK-----NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CCCCCC-----SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ccCccC-----hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            887432     45678888888888888762     223333344333   555555543 232  44677777777777


Q ss_pred             CCCCCCC
Q 047084          147 VDADSPS  153 (437)
Q Consensus       147 l~~~~p~  153 (437)
                      +++..|.
T Consensus       183 l~~~~~~  189 (680)
T 1ziw_A          183 IKEFSPG  189 (680)
T ss_dssp             CCCBCTT
T ss_pred             ccccChh
Confidence            7754443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.75  E-value=8.3e-19  Score=176.37  Aligned_cols=76  Identities=22%  Similarity=0.334  Sum_probs=35.6

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      .|+++++.+..+| .+..+++|++|++++|.+..+|+ +.++++|++|++++|.+..+++ ++++++|++|++++|.++
T Consensus        50 ~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~  125 (466)
T 1o6v_A           50 TLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT  125 (466)
T ss_dssp             EEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             EEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC
Confidence            3444444444444 24444445555555554444433 4444444444444444444443 444444444444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.75  E-value=7.5e-19  Score=169.57  Aligned_cols=241  Identities=15%  Similarity=0.164  Sum_probs=165.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.++.+|. +.++++|++|++++|.+..+| .+.++++|++|++++|.+..+|. +..+++|++|++++|...
T Consensus        69 ~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~  145 (347)
T 4fmz_A           69 EYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNL  145 (347)
T ss_dssp             CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTC
T ss_pred             cEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCc
Confidence            589999999998876 899999999999999998774 68899999999999888888887 888999999999998654


Q ss_pred             cccccccccccccCCccCcEEEeecCChHh---HhhccchHh---cccccccCCchhhcCCCCCeEEeeCCcCCCCCC--
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQ---LRNLLKTIPPPLAADRSTKKARFRSHEVDADSP--  152 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~---l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p--  152 (437)
                      ..      +..+..+++|++|++++|....   +..+..|+.   .+|.+..++. +..+++|+.|++++|.+++..+  
T Consensus       146 ~~------~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  218 (347)
T 4fmz_A          146 SD------LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVA  218 (347)
T ss_dssp             CC------CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGG
T ss_pred             cc------ccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhh
Confidence            32      3347888888888888886322   333333333   3566666655 6777777777877777774322  


Q ss_pred             CCchhhhhhcCCCCCCC---CchhccceeeecCCCCcccC----CCCCCCeEeechHHHhhhcccccceEEEEecCCCcC
Q 047084          153 SPLSFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVTIG----DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIG  225 (437)
Q Consensus       153 ~~~~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~~~----~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls  225 (437)
                      ...++..+.+++|.+..   ......++.|++++|+++..    ....+..+.++.+.+..++...   ...++..++++
T Consensus       219 ~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~l~~L~~L~L~  295 (347)
T 4fmz_A          219 NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLN---NLSQLNSLFLN  295 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGG---GCTTCSEEECC
T ss_pred             cCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhc---CCCCCCEEECc
Confidence            11245566667776622   22333456677777776632    2245566666666555542211   11234445677


Q ss_pred             HHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084          226 YKVLCNRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       226 ~n~l~~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                      .|.+....+..+...+.++.+++++|.+.
T Consensus       296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          296 NNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             SSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             CCcCCCcChhHhhccccCCEEEccCCccc
Confidence            77776666777777888888888888765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.74  E-value=2.4e-19  Score=183.84  Aligned_cols=122  Identities=11%  Similarity=0.052  Sum_probs=64.8

Q ss_pred             hhcCCCCCeEEeeCCcCCCCCCCCc----hhhhhhcCCCCCCCCc--hhccceeeecCCCCcccC--CCCCCCeEeechH
Q 047084          131 LAADRSTKKARFRSHEVDADSPSPL----SFKDALVHPEQYRSSE--DAEMEEEWDLEPGDVTIG--DDGTMPTIKFSKR  202 (437)
Q Consensus       131 ~~~l~~L~~L~l~~N~l~~~~p~~~----~~~~~~l~~n~l~~~~--~~~~~~~L~L~~n~l~~~--~~~~lp~l~l~~n  202 (437)
                      +..+++|++|++++|+++ .+|..+    ++..+.+++|++....  ....++.|+|++|+++..  ..+.+..+.++.|
T Consensus       383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N  461 (549)
T 2z81_A          383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN  461 (549)
T ss_dssp             GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC
Confidence            344455555555555555 344332    3344445555552111  112345566666666532  1245556666666


Q ss_pred             HHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEE
Q 047084          203 IQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIR  256 (437)
Q Consensus       203 ~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~  256 (437)
                      .+..++.. .  ...++..+++++|.+++..+..+.....++.+++++|.|...
T Consensus       462 ~l~~ip~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          462 KLKTLPDA-S--LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             CCSSCCCG-G--GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             ccCcCCCc-c--cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            66654432 1  122344456677777666666667777777777777776533

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.74  E-value=2.3e-19  Score=184.00  Aligned_cols=145  Identities=26%  Similarity=0.309  Sum_probs=106.4

Q ss_pred             CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.++.+ |..|.++++|++|++++|++..++ .+++++++|++|++++|.+..+|+. |+++++|++|++++|
T Consensus        29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  108 (549)
T 2z81_A           29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN  108 (549)
T ss_dssp             CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred             cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence            5789999998777 457888999999999999987555 6788899999999998888887775 889999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCC------hHhHhhccchHhc---cccc-ccCCchhh---------------
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD------SEALKELMKLRQL---RNLL-KTIPPPLA---------------  132 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~------~~~~~~L~~L~~l---~n~~-~~ip~~~~---------------  132 (437)
                      .+++.    .+|..++++++|++|++++|.      +..+..+.+|+.+   +|.+ +.+|..+.               
T Consensus       109 ~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          109 PYQTL----GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CCSSS----CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             ccccc----chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            88743    235667888888888888875      1334444444444   3333 23444333               


Q ss_pred             ---------cCCCCCeEEeeCCcCCC
Q 047084          133 ---------ADRSTKKARFRSHEVDA  149 (437)
Q Consensus       133 ---------~l~~L~~L~l~~N~l~~  149 (437)
                               .+++|++|++++|++++
T Consensus       185 ~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          185 AFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             cccchhhHhhcccccEEEccCCcccc
Confidence                     46778888888888875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=7.4e-18  Score=160.05  Aligned_cols=175  Identities=18%  Similarity=0.214  Sum_probs=125.9

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.+..+| .+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+| .+..+++|++|++++|.++
T Consensus        44 ~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~  120 (308)
T 1h6u_A           44 TTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQIT  120 (308)
T ss_dssp             CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCC
T ss_pred             CEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCC
Confidence            57899999998887 68889999999999999988877 889999999999988888876 5889999999999999988


Q ss_pred             cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCC-
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPS-  153 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~-  153 (437)
                      +      ++. +..+++|+.|++++|....   +..+..|+.+   +|.+..++. +..+++|+.|++++|++++ ++. 
T Consensus       121 ~------~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l  191 (308)
T 1h6u_A          121 D------VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD-ISPL  191 (308)
T ss_dssp             C------CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGG
T ss_pred             C------chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc-Chhh
Confidence            4      343 8889999999999987332   3333333333   566666665 7788888888888888874 332 


Q ss_pred             --CchhhhhhcCCCCCCC---CchhccceeeecCCCCcc
Q 047084          154 --PLSFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       154 --~~~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~  187 (437)
                        ...+..+.+++|++..   ......++.|+|++|+++
T Consensus       192 ~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred             cCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence              1133444555555511   111223344555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=3.6e-18  Score=170.88  Aligned_cols=212  Identities=16%  Similarity=0.100  Sum_probs=140.8

Q ss_pred             CCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcE
Q 047084           21 FNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQK  100 (437)
Q Consensus        21 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~  100 (437)
                      ++|++|++++|++..+| +++++++|++|++++|.++.+|..+   ++|++|++++|+++      .+| .++.+++|+.
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~------~l~-~~~~l~~L~~  199 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE------ELP-ELQNLPFLTA  199 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS------SCC-CCTTCTTCCE
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCC------cCc-cccCCCCCCE
Confidence            45666666666666666 4666777777777766666666533   46777777777766      345 5888899999


Q ss_pred             EEeecCChHhH----hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc-hhhhhhcCCCCCCC-Cchhc
Q 047084          101 LCIIEADSEAL----KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL-SFKDALVHPEQYRS-SEDAE  174 (437)
Q Consensus       101 L~l~~n~~~~~----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~l~~n~l~~-~~~~~  174 (437)
                      |++++|....+    .+|+.|...+|.+..+|. ++.+++|++|++++|++++ +|..+ ++..+.++.|++.. .....
T Consensus       200 L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~  277 (454)
T 1jl5_A          200 IYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQ  277 (454)
T ss_dssp             EECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCT
T ss_pred             EECCCCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccC
Confidence            99999874433    356666666788888884 8899999999999999995 55543 56677788888732 22234


Q ss_pred             cceeeecCCCCcccC--CCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcE
Q 047084          175 MEEEWDLEPGDVTIG--DDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNY  252 (437)
Q Consensus       175 ~~~~L~L~~n~l~~~--~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~  252 (437)
                      .++.|++++|+++..  .+..+..+.++.|.+..++...     .++..++++.|.+++ ++.   ....++.+++++|.
T Consensus       278 ~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~-----~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~  348 (454)
T 1jl5_A          278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP-----PSLEELNVSNNKLIE-LPA---LPPRLERLIASFNH  348 (454)
T ss_dssp             TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCC-----TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred             cCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCc-----CcCCEEECCCCcccc-ccc---cCCcCCEEECCCCc
Confidence            567889999998852  2346667777777665543210     123334556665553 222   24677888888886


Q ss_pred             EE
Q 047084          253 FL  254 (437)
Q Consensus       253 f~  254 (437)
                      +.
T Consensus       349 l~  350 (454)
T 1jl5_A          349 LA  350 (454)
T ss_dssp             CS
T ss_pred             cc
Confidence            65

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.73  E-value=1.5e-18  Score=180.04  Aligned_cols=178  Identities=16%  Similarity=0.191  Sum_probs=119.5

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeecc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l   79 (437)
                      +++.+++.++++|..+.  ++|++|++++|.+..+++ .|.++++|++|++++|.+..+++ .|+++++|++|++++|.+
T Consensus        15 ~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           15 TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI   92 (606)
T ss_dssp             EEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             ceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence            56777777888877654  677888888888765553 67778888888888777776643 577888888888888877


Q ss_pred             ccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---ccccc--cCCchhhcCCCCCeEEeeCCcCCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLK--TIPPPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~--~ip~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      ++..     |..|+++++|++|++++|..     ..+.++..|+.+   +|.+.  .+|..++++++|++|++++|++++
T Consensus        93 ~~~~-----p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           93 QSFS-----PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCCC-----TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             cccC-----hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            7432     66777888888888887762     233344444444   55554  467888888888888888888886


Q ss_pred             CCCCCchhh--------hhhcCCCCCCC----CchhccceeeecCCCCc
Q 047084          150 DSPSPLSFK--------DALVHPEQYRS----SEDAEMEEEWDLEPGDV  186 (437)
Q Consensus       150 ~~p~~~~~~--------~~~l~~n~l~~----~~~~~~~~~L~L~~n~l  186 (437)
                      ..|..+...        .+.++.|.+..    ......++.|++++|.+
T Consensus       168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~  216 (606)
T 3vq2_A          168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN  216 (606)
T ss_dssp             ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred             cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCcc
Confidence            666655321        35566776621    11122456677777655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=1.4e-17  Score=156.67  Aligned_cols=139  Identities=20%  Similarity=0.212  Sum_probs=103.7

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l   79 (437)
                      +.+++++|.++.+|..+.  +.|+.|+|++|.++.+ |..+.++++|++|++++|.++.+|.. +.+++|++|++++|++
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l   89 (290)
T 1p9a_G           13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL   89 (290)
T ss_dssp             CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC
T ss_pred             cEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC
Confidence            468889999999988775  6889999999999755 46788899999999998888888775 7889999999999998


Q ss_pred             ccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---ccccccCCch-hhcCCCCCeEEeeCCcCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLKTIPPP-LAADRSTKKARFRSHEVD  148 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~~ip~~-~~~l~~L~~L~l~~N~l~  148 (437)
                      +      .+|..+..+++|++|++++|+.     ..+..+..|+.+   +|.+..+|.. +..+++|+.|+|++|+|+
T Consensus        90 ~------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           90 Q------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             S------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             C------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            8      5687888899999999998862     223333333333   4555555533 445666666666666666

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.73  E-value=1.3e-18  Score=165.49  Aligned_cols=182  Identities=16%  Similarity=0.129  Sum_probs=139.1

Q ss_pred             EEEecCCCCCc--CCcccc-------CCCCCcEEEeecccCc-ccChhh--hcccCCCEEEccCCcccccchhhcCC---
Q 047084            2 VLDLEDAPVDY--LPEGVG-------NLFNLHYLSVKNTKVK-IIPKSI--GNLLGLETLDLKNTLVRELPVEIRNL---   66 (437)
Q Consensus         2 ~L~L~~n~l~~--lp~~~~-------~l~~L~~L~L~~n~l~-~lp~~~--~~l~~L~~L~l~~~~~~~lp~~~~~L---   66 (437)
                      +|+|++|.++.  +|..+.       ++++|++|+|++|.+. .+|..+  ..+++|++|++++|.++.+|..++.+   
T Consensus        67 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~  146 (312)
T 1wwl_A           67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW  146 (312)
T ss_dssp             HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTT
T ss_pred             hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHh
Confidence            46788888743  555555       7999999999999995 788876  88999999999999998888888887   


Q ss_pred             --cCCcEEeceeeccccccccccccccccCCccCcEEEeecCCh-------HhH--hhccchHhc---ccccccCC---c
Q 047084           67 --KRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-------EAL--KELMKLRQL---RNLLKTIP---P  129 (437)
Q Consensus        67 --~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-------~~~--~~L~~L~~l---~n~~~~ip---~  129 (437)
                        ++|++|++++|++++..     |..|+.+++|++|++++|+.       ..+  ..+..|+.+   +|.+..++   .
T Consensus       147 ~~~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          147 LKPGLKVLSIAQAHSLNFS-----CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             CCTTCCEEEEESCSCCCCC-----TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             hcCCCcEEEeeCCCCccch-----HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence              99999999999998543     57899999999999999982       122  334444444   67776443   3


Q ss_pred             h-hhcCCCCCeEEeeCCcCCCCCCC-C----chhhhhhcCCCCCCCCc--hhccceeeecCCCCccc
Q 047084          130 P-LAADRSTKKARFRSHEVDADSPS-P----LSFKDALVHPEQYRSSE--DAEMEEEWDLEPGDVTI  188 (437)
Q Consensus       130 ~-~~~l~~L~~L~l~~N~l~~~~p~-~----~~~~~~~l~~n~l~~~~--~~~~~~~L~L~~n~l~~  188 (437)
                      . +..+++|++|++++|++++..|. .    .++..+.+++|++....  ....++.|+|++|+++.
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR  288 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCS
T ss_pred             HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCC
Confidence            3 35789999999999999976642 2    25677888999883211  11467889999999973

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.73  E-value=1.8e-18  Score=173.85  Aligned_cols=238  Identities=16%  Similarity=0.194  Sum_probs=174.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|+|++|.++.+|+ +.++++|++|++++|.+..+++ +.++++|++|++++|.+..+|. +.++++|++|++++|.++
T Consensus        71 ~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~  147 (466)
T 1o6v_A           71 TQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTIS  147 (466)
T ss_dssp             CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEEC
T ss_pred             CEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccC
Confidence            689999999999987 9999999999999999988776 9999999999999999999887 999999999999999998


Q ss_pred             cccccccccccccCCccCcEEEeecCC--hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCC--
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEAD--SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPS--  153 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~--~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~--  153 (437)
                      +      ++ .++.+++|+.|+++++-  ...+..++.|+.+   +|.+..++ .+..+++|++|++++|.+++..|-  
T Consensus       148 ~------~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~  219 (466)
T 1o6v_A          148 D------IS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGI  219 (466)
T ss_dssp             C------CG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred             C------Ch-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccccccc
Confidence            4      34 48899999999997543  2234444444444   66666665 488999999999999999965441  


Q ss_pred             CchhhhhhcCCCCCCC---CchhccceeeecCCCCcccCC----CCCCCeEeechHHHhhhcccccceEEEEecCCCcCH
Q 047084          154 PLSFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVTIGD----DGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGY  226 (437)
Q Consensus       154 ~~~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~~~~----~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~  226 (437)
                      ..++..+.+++|++..   ......++.|++++|+++...    ...+..+.++.+.+..+++.. .  ..++..++++.
T Consensus       220 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~--l~~L~~L~L~~  296 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA-G--LTALTNLELNE  296 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGT-T--CTTCSEEECCS
T ss_pred             cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccccc-C--CCccCeEEcCC
Confidence            1256677788888833   233445688999999987332    245666777776665544311 1  12233344555


Q ss_pred             HHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084          227 KVLCNRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       227 n~l~~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                      |.+.+..+  +...+.++.+++++|.+.
T Consensus       297 n~l~~~~~--~~~l~~L~~L~L~~n~l~  322 (466)
T 1o6v_A          297 NQLEDISP--ISNLKNLTYLTLYFNNIS  322 (466)
T ss_dssp             SCCSCCGG--GGGCTTCSEEECCSSCCS
T ss_pred             CcccCchh--hcCCCCCCEEECcCCcCC
Confidence            55544322  556677778888877654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.73  E-value=5.1e-19  Score=184.10  Aligned_cols=81  Identities=23%  Similarity=0.299  Sum_probs=55.9

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|||++|+|+.+|+ .|.++++|++|+|++|+|..+|+ +|.++++|++|+|++|.++.+|++ |.+|++|++|++++|
T Consensus        55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N  134 (635)
T 4g8a_A           55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  134 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred             CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence            467777777777754 56777777777777777766653 466677777777777667766654 666777777777777


Q ss_pred             cccc
Q 047084           78 NYTA   81 (437)
Q Consensus        78 ~l~~   81 (437)
                      ++++
T Consensus       135 ~l~~  138 (635)
T 4g8a_A          135 NLAS  138 (635)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            6663

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.72  E-value=1.9e-18  Score=177.81  Aligned_cols=103  Identities=26%  Similarity=0.300  Sum_probs=64.7

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.++.+++ .|.++++|++|+|++|.+..+| ..|.++++|++|++++|.+..+|. .++++++|++|++++|
T Consensus        55 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n  134 (570)
T 2z63_A           55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN  134 (570)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS
T ss_pred             eEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC
Confidence            355566665555533 3555666666666666654443 445566666666666555555554 3666667777777777


Q ss_pred             ccccccccccccccccCCccCcEEEeecCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~  107 (437)
                      .+++.    .+|..|+++++|++|++++|.
T Consensus       135 ~l~~~----~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A          135 LIQSF----KLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             CCCCC----CCCGGGGGCTTCCEEECTTSC
T ss_pred             cccee----cChhhhcccCCCCEEeCcCCc
Confidence            66632    357778888888888888886

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=2.4e-17  Score=153.49  Aligned_cols=162  Identities=22%  Similarity=0.311  Sum_probs=132.2

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.++.+|. .|.++++|++|++++|.+..+|.. +.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus        40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  119 (270)
T 2o6q_A           40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN  119 (270)
T ss_dssp             SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred             CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence            579999999999976 689999999999999999988865 57799999999999999998875 789999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCCh-----HhHhhccchH---hcccccccCCc-hhhcCCCCCeEEeeCCcCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLR---QLRNLLKTIPP-PLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~---~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~  148 (437)
                      .+++..     +..|+.+++|++|++++|..     ..+..+..|+   ..+|.+..+|. .+..+++|++|++++|+++
T Consensus       120 ~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          120 QLKSLP-----PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             CCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccCeeC-----HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence            998543     45689999999999999972     2234444444   44777877875 5788999999999999999


Q ss_pred             CCCCCCc----hhhhhhcCCCCC
Q 047084          149 ADSPSPL----SFKDALVHPEQY  167 (437)
Q Consensus       149 ~~~p~~~----~~~~~~l~~n~l  167 (437)
                      +..+..+    ++..+.+++|.+
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          195 RVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCCHHHhccccCCCEEEecCCCe
Confidence            5433333    456677888876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.1e-17  Score=158.91  Aligned_cols=183  Identities=14%  Similarity=0.135  Sum_probs=123.4

Q ss_pred             CEEEecCCCCC-cCCccc--cCCCCCcEEEeecccCcc-cC----hhhhcccCCCEEEccCCcccccch-hhcCCcCCcE
Q 047084            1 KVLDLEDAPVD-YLPEGV--GNLFNLHYLSVKNTKVKI-IP----KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRY   71 (437)
Q Consensus         1 ~~L~L~~n~l~-~lp~~~--~~l~~L~~L~L~~n~l~~-lp----~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~   71 (437)
                      ++|++++|.+. ..|..+  .++++|++|+|++|.+.. .+    ..+..+++|++|++++|.+..++. .++++++|++
T Consensus        94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  173 (310)
T 4glp_A           94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTS  173 (310)
T ss_dssp             CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCE
T ss_pred             eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCE
Confidence            57889999885 456666  888999999999998853 33    344578899999999887777764 5888999999


Q ss_pred             Eeceeecccccccccccc--ccccCCccCcEEEeecCChHh--------HhhccchHhc---ccccccC-CchhhcC---
Q 047084           72 LMVYQYNYTAGFAAAKLH--EGFGSLTNLQKLCIIEADSEA--------LKELMKLRQL---RNLLKTI-PPPLAAD---  134 (437)
Q Consensus        72 L~l~~n~l~~~~~~~~lp--~~~~~l~~L~~L~l~~n~~~~--------~~~L~~L~~l---~n~~~~i-p~~~~~l---  134 (437)
                      |++++|++.+..   .++  ..++.+++|++|++++|+...        +..+..|+.+   +|.+..+ |..+..+   
T Consensus       174 L~Ls~N~l~~~~---~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          174 LDLSDNPGLGER---GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             EECCSCTTCHHH---HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             EECCCCCCccch---hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            999999876431   122  224678889999999887321        2233444433   5666554 6666655   


Q ss_pred             CCCCeEEeeCCcCCCCCCCCc--hhhhhhcCCCCCCC---CchhccceeeecCCCCcc
Q 047084          135 RSTKKARFRSHEVDADSPSPL--SFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       135 ~~L~~L~l~~N~l~~~~p~~~--~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~  187 (437)
                      ++|++|+|++|+|+ .+|..+  ++..+.++.|++..   +.....++.|+|++|+++
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred             CcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence            58888888888888 566544  45556666666622   222333455666666664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=3.9e-17  Score=150.31  Aligned_cols=165  Identities=18%  Similarity=0.227  Sum_probs=118.6

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      ++++++++.++.+|..+.  ..|+.|+|++|.+..++ ..+.++++|++|++++|.+..+++. |.++++|++|++++|+
T Consensus        17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             TEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             eEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            468999999999998776  58999999999997665 5688999999999998888887765 8999999999999999


Q ss_pred             cccccccccccccccCCccCcEEEeecCChH-----hHh---hccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALK---ELMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~---~L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~  149 (437)
                      +++..     +..|..+++|++|++++|...     .+.   +|+.|...+|.+..+|. .+..+++|++|+|++|++++
T Consensus        95 l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           95 LASLP-----LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccccC-----hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            98432     455789999999999998622     122   23333333555555554 45666666666666666664


Q ss_pred             CCCCCchhhhhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084          150 DSPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       150 ~~p~~~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~  187 (437)
                      ..+..+.               ....++.|+|++|+++
T Consensus       170 ~~~~~~~---------------~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          170 VPHGAFD---------------RLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCTTTTT---------------TCTTCCEEECCSCCBC
T ss_pred             cCHHHHh---------------CCCCCCEEEeeCCcee
Confidence            3332221               1223566788888876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=1.2e-17  Score=157.24  Aligned_cols=165  Identities=19%  Similarity=0.162  Sum_probs=135.1

Q ss_pred             CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084            1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l   79 (437)
                      ++|+|++|.++.++ ..|.++++|++|+|++|.|..++.. ..+++|++|++++|.++.+|..+..+++|++|++++|++
T Consensus        34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l  112 (290)
T 1p9a_G           34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL  112 (290)
T ss_dssp             CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcC
Confidence            57999999998885 5789999999999999999877654 789999999999999999999999999999999999999


Q ss_pred             ccccccccccccccCCccCcEEEeecCCh-----HhHh---hccchHhcccccccCCch-hhcCCCCCeEEeeCCcCCCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALK---ELMKLRQLRNLLKTIPPP-LAADRSTKKARFRSHEVDAD  150 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~---~L~~L~~l~n~~~~ip~~-~~~l~~L~~L~l~~N~l~~~  150 (437)
                      ++..     |..|..+++|++|++++|+.     ..+.   +|+.|...+|.+..+|.. +..+++|++|+|++|+|+ .
T Consensus       113 ~~l~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          113 TSLP-----LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             CCCC-----SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             cccC-----HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence            9442     46689999999999999972     2333   444444447888889865 568999999999999999 6


Q ss_pred             CCCCchhhhhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084          151 SPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       151 ~p~~~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~  187 (437)
                      +|..+.-               ...++.|+|++|.+.
T Consensus       187 ip~~~~~---------------~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          187 IPKGFFG---------------SHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTT---------------TCCCSEEECCSCCBC
T ss_pred             cChhhcc---------------cccCCeEEeCCCCcc
Confidence            7764321               113466788888875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=161.30  Aligned_cols=160  Identities=23%  Similarity=0.280  Sum_probs=118.8

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|++++|.++.+|. .+.++++|++|++++|.+..++ ..+.++++|++|++++|.++.+|.. ++++++|++|++++|
T Consensus        55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  134 (353)
T 2z80_A           55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN  134 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred             cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence            578999999988876 6888999999999999987664 5688899999999998888888887 888999999999999


Q ss_pred             ccccccccccccc--cccCCccCcEEEeecCC------hHhHhhccchHhc---cccccc-CCchhhcCCCCCeEEeeCC
Q 047084           78 NYTAGFAAAKLHE--GFGSLTNLQKLCIIEAD------SEALKELMKLRQL---RNLLKT-IPPPLAADRSTKKARFRSH  145 (437)
Q Consensus        78 ~l~~~~~~~~lp~--~~~~l~~L~~L~l~~n~------~~~~~~L~~L~~l---~n~~~~-ip~~~~~l~~L~~L~l~~N  145 (437)
                      +++      .+|.  .+..+++|++|++++|+      +..+..+..|+.+   +|.+.. .|..+..+++|++|++++|
T Consensus       135 ~l~------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          135 PYK------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             CCS------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             CCc------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            888      3455  57888899999998884      2344445555444   455443 4667777777777887777


Q ss_pred             cCCCCCCCC-----chhhhhhcCCCCC
Q 047084          146 EVDADSPSP-----LSFKDALVHPEQY  167 (437)
Q Consensus       146 ~l~~~~p~~-----~~~~~~~l~~n~l  167 (437)
                      .++ .+|..     .++..+.+++|.+
T Consensus       209 ~l~-~~~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          209 QHI-LLLEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             CST-THHHHHHHHTTTEEEEEEESCBC
T ss_pred             ccc-cchhhhhhhcccccEEECCCCcc
Confidence            775 33332     1344455556655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=8.9e-17  Score=149.76  Aligned_cols=165  Identities=18%  Similarity=0.231  Sum_probs=109.2

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l   79 (437)
                      +.|++++|.++.++ .+..+++|++|++++|.+..+ +.+..+++|++|++++|.++.+|+. +.++++|++|++++|++
T Consensus        44 ~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  121 (272)
T 3rfs_A           44 DQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL  121 (272)
T ss_dssp             CEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             eeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC
Confidence            46788888887775 577888888888888888765 4678888888888888888777765 68888888888888888


Q ss_pred             ccccccccccccccCCccCcEEEeecCChH-----hHhh---ccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCCCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALKE---LMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVDAD  150 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~~---L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~~  150 (437)
                      ++..     +..|+.+++|++|++++|...     .+..   |+.|...+|.+..+|. .+..+++|++|++++|++++.
T Consensus       122 ~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          122 QSLP-----DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             CCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CccC-----HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            7432     344788888888888887621     1222   2222222444444443 234555555555555555543


Q ss_pred             CCCCchhhhhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084          151 SPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       151 ~p~~~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~  187 (437)
                      .|..+               .....++.|++++|.++
T Consensus       197 ~~~~~---------------~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          197 PDGVF---------------DRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CTTTT---------------TTCTTCCEEECCSSCBC
T ss_pred             CHHHH---------------hCCcCCCEEEccCCCcc
Confidence            32211               12234567888888876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.70  E-value=3.6e-17  Score=149.34  Aligned_cols=167  Identities=13%  Similarity=0.196  Sum_probs=93.5

Q ss_pred             EEEecCCCCCcCCc-cccCCCCCcEEEeeccc-CcccCh-hhhcccCCCEEEccC-Ccccccch-hhcCCcCCcEEecee
Q 047084            2 VLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTK-VKIIPK-SIGNLLGLETLDLKN-TLVRELPV-EIRNLKRLRYLMVYQ   76 (437)
Q Consensus         2 ~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~-l~~lp~-~~~~l~~L~~L~l~~-~~~~~lp~-~~~~L~~L~~L~l~~   76 (437)
                      +|++++|+++.+|+ .|.++++|++|++++|. ++.+++ .+.++++|++|++++ |.++.+|. .|.++++|++|++++
T Consensus        35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~  114 (239)
T 2xwt_C           35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN  114 (239)
T ss_dssp             EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred             EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence            45566666655544 45556666666666664 555543 455556666666654 55555554 355566666666666


Q ss_pred             eccccccccccccccccCCccCc---EEEeecCChHhHhhccchHhcccccccCCc-hhhcCCCCC-eEEeeCCcCCCCC
Q 047084           77 YNYTAGFAAAKLHEGFGSLTNLQ---KLCIIEADSEALKELMKLRQLRNLLKTIPP-PLAADRSTK-KARFRSHEVDADS  151 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~~L~---~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~-~~~~l~~L~-~L~l~~N~l~~~~  151 (437)
                      |.+++      +|. +..+++|+   +|++++|.               .+..+|. .+..+++|+ +|++++|+++ .+
T Consensus       115 n~l~~------lp~-~~~l~~L~~L~~L~l~~N~---------------~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i  171 (239)
T 2xwt_C          115 TGLKM------FPD-LTKVYSTDIFFILEITDNP---------------YMTSIPVNAFQGLCNETLTLKLYNNGFT-SV  171 (239)
T ss_dssp             ECCCS------CCC-CTTCCBCCSEEEEEEESCT---------------TCCEECTTTTTTTBSSEEEEECCSCCCC-EE
T ss_pred             CCCcc------ccc-cccccccccccEEECCCCc---------------chhhcCcccccchhcceeEEEcCCCCCc-cc
Confidence            65552      343 55555555   55555540               3444443 356666777 7777777766 44


Q ss_pred             CCC----chhhhhhcCCCC-CC-----CCchh-ccceeeecCCCCcccCCC
Q 047084          152 PSP----LSFKDALVHPEQ-YR-----SSEDA-EMEEEWDLEPGDVTIGDD  191 (437)
Q Consensus       152 p~~----~~~~~~~l~~n~-l~-----~~~~~-~~~~~L~L~~n~l~~~~~  191 (437)
                      |..    .++..+.+++|+ +.     .+... ..++.|++++|+++..+.
T Consensus       172 ~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~  222 (239)
T 2xwt_C          172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS  222 (239)
T ss_dssp             CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred             CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence            432    134555666663 51     12223 456889999999975443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=3.5e-16  Score=141.89  Aligned_cols=149  Identities=16%  Similarity=0.192  Sum_probs=119.0

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      +.++.+++.++.+|..+.  ++|++|+|++|.|..+ |..+.++++|++|++++|.++.+|.. |..+++|++|+|++|+
T Consensus        22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            368899999999998765  8999999999999766 57788999999999999999999876 7899999999999999


Q ss_pred             cccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCchhh
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSFK  158 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~  158 (437)
                      +++..     +..|..+++|++|++++|+                +..+|..+..+++|++|+|++|+|++..+..+.. 
T Consensus       100 l~~l~-----~~~~~~l~~L~~L~Ls~N~----------------l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-  157 (229)
T 3e6j_A          100 LTVLP-----SAVFDRLVHLKELFMCCNK----------------LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR-  157 (229)
T ss_dssp             CCCCC-----TTTTTTCTTCCEEECCSSC----------------CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT-
T ss_pred             CCccC-----hhHhCcchhhCeEeccCCc----------------ccccCcccccCCCCCEEECCCCcCCccCHHHHhC-
Confidence            98432     3457899999999999864                4567878888899999999999998433322211 


Q ss_pred             hhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084          159 DALVHPEQYRSSEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       159 ~~~l~~n~l~~~~~~~~~~~L~L~~n~l~  187 (437)
                                    ...++.|+|++|.++
T Consensus       158 --------------l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          158 --------------LSSLTHAYLFGNPWD  172 (229)
T ss_dssp             --------------CTTCCEEECTTSCBC
T ss_pred             --------------CCCCCEEEeeCCCcc
Confidence                          123455677777765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.68  E-value=1.5e-16  Score=146.46  Aligned_cols=148  Identities=20%  Similarity=0.287  Sum_probs=122.0

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.++.++. .+.++++|++|+|++|.+..++ ..+.++++|++|++++|.++.+|.. |..+++|++|++++|
T Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence            579999999988865 6899999999999999997665 4588999999999999999988865 799999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHh---cccccccCCc-hhhcCCCCCeEEeeCCcCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQ---LRNLLKTIPP-PLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~---l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~  148 (437)
                      ++++..     +..|..+++|++|++++|..     ..+..+..|+.   .+|.+..+|. .+..+++|++|++++|+++
T Consensus       118 ~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          118 QLKSLP-----SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCCcC-----hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            998432     34478999999999999972     23444444444   4788877775 6889999999999999999


Q ss_pred             CCCCC
Q 047084          149 ADSPS  153 (437)
Q Consensus       149 ~~~p~  153 (437)
                      +....
T Consensus       193 c~~~~  197 (251)
T 3m19_A          193 CSRCE  197 (251)
T ss_dssp             TTSTT
T ss_pred             CCccc
Confidence            65343

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.4e-16  Score=140.98  Aligned_cols=126  Identities=17%  Similarity=0.209  Sum_probs=75.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccc-cchhhcCCcCCcEEeceeecc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRE-LPVEIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~-lp~~~~~L~~L~~L~l~~n~l   79 (437)
                      ++|++++|.++.+| .+..+++|++|++++|.+..+ +.+..+++|++|++++|.++. .|..++.+++|++|++++|.+
T Consensus        47 ~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  124 (197)
T 4ezg_A           47 TYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH  124 (197)
T ss_dssp             CEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred             cEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence            35666666666665 566666666666666655443 355566666666666555543 455566666666666666666


Q ss_pred             ccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      ++.     .|..++.+++|++|++++|.               .++.+| .+..+++|++|++++|++++
T Consensus       125 ~~~-----~~~~l~~l~~L~~L~L~~n~---------------~i~~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          125 DDS-----ILTKINTLPKVNSIDLSYNG---------------AITDIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             BGG-----GHHHHTTCSSCCEEECCSCT---------------BCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             CcH-----hHHHHhhCCCCCEEEccCCC---------------CccccH-hhcCCCCCCEEECCCCCCcC
Confidence            532     24555666666666666653               144444 46667777777777777763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=2.2e-16  Score=158.11  Aligned_cols=175  Identities=14%  Similarity=0.113  Sum_probs=129.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.++.+|  ++.+++|++|++++|.+..+|  ++++++|++|++++|.++.+|  ++.+++|++|++++|+++
T Consensus        67 ~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~  140 (457)
T 3bz5_A           67 TKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLT  140 (457)
T ss_dssp             SEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCS
T ss_pred             CEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccc
Confidence            58999999998886  889999999999999998775  889999999999988888886  889999999999999998


Q ss_pred             cccccccccccccCCccCcEEEeecCC------hHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCC-CCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEAD------SEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDAD-SPS  153 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~------~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~-~p~  153 (437)
                      +      ++  ++.+++|+.|++++|.      +..+++|+.|...+|.+..+|  +..+++|+.|++++|++++. +..
T Consensus       141 ~------l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~l~~  210 (457)
T 3bz5_A          141 E------ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQ  210 (457)
T ss_dssp             C------CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCCCTT
T ss_pred             e------ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeecccc
Confidence            4      22  6778888888888884      233344444444466676676  66777788888888877753 111


Q ss_pred             CchhhhhhcCCCCCCC--CchhccceeeecCCCCcccCCC
Q 047084          154 PLSFKDALVHPEQYRS--SEDAEMEEEWDLEPGDVTIGDD  191 (437)
Q Consensus       154 ~~~~~~~~l~~n~l~~--~~~~~~~~~L~L~~n~l~~~~~  191 (437)
                      ..++..+.++.|++..  ......++.|++++|+++..+.
T Consensus       211 l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          211 NIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             CTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCC
T ss_pred             CCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCH
Confidence            2245566677777622  2223345667777777765444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.67  E-value=1.2e-16  Score=166.07  Aligned_cols=146  Identities=18%  Similarity=0.290  Sum_probs=118.7

Q ss_pred             EEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeeccc
Q 047084            3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~   80 (437)
                      .+-++.+++++|+.+.  .++++|||++|+|+.+| .+|.++++|++|+|++|.++.+|++ |.+|++|++|+|++|+++
T Consensus        36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           36 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence            3455667899998764  47999999999999887 4699999999999999999999875 899999999999999998


Q ss_pred             ccccccccc-ccccCCccCcEEEeecCChH-----hHhhccchHhc---cccccc--CCchhhcCCCCCeEEeeCCcCCC
Q 047084           81 AGFAAAKLH-EGFGSLTNLQKLCIIEADSE-----ALKELMKLRQL---RNLLKT--IPPPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        81 ~~~~~~~lp-~~~~~l~~L~~L~l~~n~~~-----~~~~L~~L~~l---~n~~~~--ip~~~~~l~~L~~L~l~~N~l~~  149 (437)
                            .+| ..|.++++|++|++++|+..     .+.+++.|+.+   +|.+..  +|..++.+++|++|++++|+|++
T Consensus       114 ------~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          114 ------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             ------EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             ------CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence                  445 45899999999999999732     24444444444   666654  56788899999999999999997


Q ss_pred             CCCCCch
Q 047084          150 DSPSPLS  156 (437)
Q Consensus       150 ~~p~~~~  156 (437)
                      ..|..+.
T Consensus       188 ~~~~~l~  194 (635)
T 4g8a_A          188 IYCTDLR  194 (635)
T ss_dssp             ECGGGGH
T ss_pred             ccccccc
Confidence            6666553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.67  E-value=1.3e-18  Score=166.08  Aligned_cols=205  Identities=12%  Similarity=0.103  Sum_probs=110.0

Q ss_pred             cCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCc
Q 047084           18 GNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLT   96 (437)
Q Consensus        18 ~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~   96 (437)
                      ..+++|++|+|++|.+..++ ..+.++++|++|++++|.+..+++ +..+++|++|++++|.+++      +|    ..+
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~------l~----~~~   99 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE------LL----VGP   99 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE------EE----ECT
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc------cc----CCC
Confidence            44556666666666665444 456666666666666666555544 6666666666666666652      22    225


Q ss_pred             cCcEEEeecCCh-----HhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCCCCCCCc-----hhhhhhcCCC
Q 047084           97 NLQKLCIIEADS-----EALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDADSPSPL-----SFKDALVHPE  165 (437)
Q Consensus        97 ~L~~L~l~~n~~-----~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~~~p~~~-----~~~~~~l~~n  165 (437)
                      +|++|++++|+.     ..+++|+.|...+|.+..++ ..+..+++|++|++++|.+++..|..+     ++..+.+++|
T Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             TCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            666666666652     22334444444455554443 345566666666666666664333222     3344455555


Q ss_pred             CCCC---CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCc
Q 047084          166 QYRS---SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHD  242 (437)
Q Consensus       166 ~l~~---~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~  242 (437)
                      .+..   ......++.|+|++|+++...          .. +..+         .++..++++.|.++. ++..+.....
T Consensus       180 ~l~~~~~~~~l~~L~~L~Ls~N~l~~l~----------~~-~~~l---------~~L~~L~L~~N~l~~-l~~~~~~l~~  238 (317)
T 3o53_A          180 FIYDVKGQVVFAKLKTLDLSSNKLAFMG----------PE-FQSA---------AGVTWISLRNNKLVL-IEKALRFSQN  238 (317)
T ss_dssp             CCCEEECCCCCTTCCEEECCSSCCCEEC----------GG-GGGG---------TTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred             cCcccccccccccCCEEECCCCcCCcch----------hh-hccc---------CcccEEECcCCcccc-hhhHhhcCCC
Confidence            5511   111334566677777665211          10 1100         122233455555542 3455666778


Q ss_pred             eEEEEcCCcEEE
Q 047084          243 FSVIDLENNYFL  254 (437)
Q Consensus       243 l~~l~l~~N~f~  254 (437)
                      ++.+++++|.+.
T Consensus       239 L~~L~l~~N~~~  250 (317)
T 3o53_A          239 LEHFDLRGNGFH  250 (317)
T ss_dssp             CCEEECTTCCCB
T ss_pred             CCEEEccCCCcc
Confidence            888888888876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=1.9e-16  Score=142.81  Aligned_cols=131  Identities=11%  Similarity=0.195  Sum_probs=100.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccC--hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP--KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n   77 (437)
                      +++++++|.++++|..+.  ..+++|+|++|.|..++  ..+..+++|++|++++|.++.+++ .|.++++|++|+|++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            478999999999998774  35689999999998764  348899999999999999998877 5999999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPS  153 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~  153 (437)
                      .+++..     |..|..+++|++|++++|+...               ..|..+..+++|++|+|++|+|++..|.
T Consensus        92 ~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           92 RLENVQ-----HKMFKGLESLKTLMLRSNRITC---------------VGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             CCCCCC-----GGGGTTCSSCCEEECTTSCCCC---------------BCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             ccCccC-----HhHhcCCcCCCEEECCCCcCCe---------------ECHhHcCCCccCCEEECCCCcCCEECHH
Confidence            998543     4568999999999999986221               1234445555555555555555543343

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.67  E-value=5.8e-17  Score=167.54  Aligned_cols=213  Identities=18%  Similarity=0.126  Sum_probs=107.8

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhh-----------------cccCCCEEEccCCcccccchhhc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIG-----------------NLLGLETLDLKNTLVRELPVEIR   64 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~-----------------~l~~L~~L~l~~~~~~~lp~~~~   64 (437)
                      +|+|++|.++.+|.   .+++|++|+|++|+|+.+|..+.                 .+++|++|++++|.+..+|..  
T Consensus        65 ~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~--  139 (622)
T 3g06_A           65 TLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL--  139 (622)
T ss_dssp             EEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCC--
T ss_pred             EEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCC--
Confidence            45555555555554   34455555555555544443000                 334455555555555555543  


Q ss_pred             CCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHhH----hhccchHhcccccccCCchhhcCCCCCeE
Q 047084           65 NLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEAL----KELMKLRQLRNLLKTIPPPLAADRSTKKA  140 (437)
Q Consensus        65 ~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L  140 (437)
                       +++|++|++++|++++      +|.   .+.+|+.|++++|....+    .+|+.|...+|.+..+|..   +++|+.|
T Consensus       140 -l~~L~~L~Ls~N~l~~------l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L  206 (622)
T 3g06_A          140 -PPGLQELSVSDNQLAS------LPA---LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKL  206 (622)
T ss_dssp             -CTTCCEEECCSSCCSC------CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEE
T ss_pred             -CCCCCEEECcCCcCCC------cCC---ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEE
Confidence             3778888888888773      343   234566666666653332    3444444445555555542   3556666


Q ss_pred             EeeCCcCCCCCCCCc-hhhhhhcCCCCCCC-CchhccceeeecCCCCcccCCC--CCCCeEeechHHHhhhcccccceEE
Q 047084          141 RFRSHEVDADSPSPL-SFKDALVHPEQYRS-SEDAEMEEEWDLEPGDVTIGDD--GTMPTIKFSKRIQDKLIKPWQNSVV  216 (437)
Q Consensus       141 ~l~~N~l~~~~p~~~-~~~~~~l~~n~l~~-~~~~~~~~~L~L~~n~l~~~~~--~~lp~l~l~~n~l~~l~~~~~~~l~  216 (437)
                      ++++|.++ .+|..+ ++..+.+++|++.. ......++.|+|++|+++..+.  ..+..+.++.|.+..++.....  .
T Consensus       207 ~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~--l  283 (622)
T 3g06_A          207 WAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIH--L  283 (622)
T ss_dssp             ECCSSCCS-SCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCGGGGG--S
T ss_pred             ECcCCccc-ccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCHHHhh--c
Confidence            66666666 344332 34455556665522 1222344556666666653322  3445556666655544332211  1


Q ss_pred             EEecCCCcCHHHHHHHHHh
Q 047084          217 VKLLGRNIGYKVLCNRLKV  235 (437)
Q Consensus       217 ~~l~~~~ls~n~l~~~l~~  235 (437)
                      .++..++++.|.+.+..+.
T Consensus       284 ~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          284 SSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CTTCEEECCSCCCCHHHHH
T ss_pred             cccCEEEecCCCCCCcCHH
Confidence            2233344555555544444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.66  E-value=3.5e-16  Score=145.72  Aligned_cols=147  Identities=22%  Similarity=0.338  Sum_probs=121.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      ++|++++|.+..++ .+.++++|++|++++|.+..+++. +.++++|++|++++|.+..+|+. ++.+++|++|++++|.
T Consensus        66 ~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  144 (272)
T 3rfs_A           66 RYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ  144 (272)
T ss_dssp             CEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc
Confidence            68999999998874 789999999999999999877654 78899999999999988888876 7999999999999999


Q ss_pred             cccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHh---cccccccCCc-hhhcCCCCCeEEeeCCcCCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQ---LRNLLKTIPP-PLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~---l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~  149 (437)
                      +++..     +..++.+++|+.|++++|+.     ..+..+..|+.   .+|.+..+|. .+..+++|++|++++|++.+
T Consensus       145 l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          145 LQSLP-----KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             CCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCccC-----HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence            98542     44578999999999999972     22334444444   4677766664 57899999999999999998


Q ss_pred             CCCC
Q 047084          150 DSPS  153 (437)
Q Consensus       150 ~~p~  153 (437)
                      ..|.
T Consensus       220 ~~~~  223 (272)
T 3rfs_A          220 TCPG  223 (272)
T ss_dssp             CTTT
T ss_pred             cCcH
Confidence            7663

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=3.6e-16  Score=137.80  Aligned_cols=130  Identities=15%  Similarity=0.207  Sum_probs=112.1

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChh--hhcccCCCEEEccCCccccc-chhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKS--IGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~n   77 (437)
                      +++++++|.++++|..+..  +|++|++++|.|+.+++.  +..+++|++|++++|.++.+ |..|.++++|++|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            5799999999999987754  899999999999888753  88999999999998888877 567999999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSP  152 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p  152 (437)
                      ++++..     |..|..+++|++|++++|+..               +..|..+..+++|++|+|++|++++..+
T Consensus        89 ~l~~~~-----~~~~~~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           89 KIKEIS-----NKMFLGLHQLKTLNLYDNQIS---------------CVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCEEC-----SSSSTTCTTCCEEECCSSCCC---------------EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCCccC-----HHHhcCCCCCCEEECCCCcCC---------------eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999543     556899999999999997532               3446788899999999999999997654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.66  E-value=2.5e-16  Score=148.24  Aligned_cols=159  Identities=20%  Similarity=0.271  Sum_probs=94.2

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.+..+| .+..+++|++|++++|++..+++ +.++++|++|++++|.++.+|. +..+++|++|++++|+++
T Consensus        49 ~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~  125 (291)
T 1h6t_A           49 DQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGIS  125 (291)
T ss_dssp             CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCC
T ss_pred             cEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCC
Confidence            46777777777764 36667777777777777766655 6777777777777776666554 777777777777777776


Q ss_pred             cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPSP  154 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~  154 (437)
                      +      + ..+..+++|+.|++++|....   +..+..|+.+   +|.+..++. +..+++|+.|++++|++++ +|  
T Consensus       126 ~------~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~--  194 (291)
T 1h6t_A          126 D------I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR--  194 (291)
T ss_dssp             C------C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG--
T ss_pred             C------C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Ch--
Confidence            3      2 246667777777777765322   1122222222   344444433 4444555555555555442 11  


Q ss_pred             chhhhhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084          155 LSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       155 ~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~  187 (437)
                                    .......++.|++++|+++
T Consensus       195 --------------~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          195 --------------ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             --------------GGTTCTTCSEEEEEEEEEE
T ss_pred             --------------hhccCCCCCEEECcCCccc
Confidence                          1112234566788888776

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.66  E-value=1.1e-16  Score=146.02  Aligned_cols=177  Identities=16%  Similarity=0.179  Sum_probs=135.4

Q ss_pred             CCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCc-ccccch-hhcCCcCCcEEecee-ecccccc
Q 047084            8 APVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTL-VRELPV-EIRNLKRLRYLMVYQ-YNYTAGF   83 (437)
Q Consensus         8 n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~-~~~lp~-~~~~L~~L~~L~l~~-n~l~~~~   83 (437)
                      +.++++|. +.  .+|++|++++|++..+|+ .+.++++|++|++++|. ++.+|+ .|.++++|++|++++ |++++..
T Consensus        21 ~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           21 KDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             cCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            34888887 54  389999999999988876 78899999999999885 988887 589999999999999 9998432


Q ss_pred             ccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCC---eEEeeCC-cCCCCCCCCc----
Q 047084           84 AAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTK---KARFRSH-EVDADSPSPL----  155 (437)
Q Consensus        84 ~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~---~L~l~~N-~l~~~~p~~~----  155 (437)
                           +..|.++++|++|++++|.                +..+|. +..+++|+   +|++++| .+++..+..+    
T Consensus        98 -----~~~f~~l~~L~~L~l~~n~----------------l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~  155 (239)
T 2xwt_C           98 -----PDALKELPLLKFLGIFNTG----------------LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC  155 (239)
T ss_dssp             -----TTSEECCTTCCEEEEEEEC----------------CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred             -----HHHhCCCCCCCEEeCCCCC----------------Cccccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence                 3568999999999999864                334565 67777787   9999999 9984333333    


Q ss_pred             hhh-hhhcCCCCCCC----CchhccceeeecCCCC-cccCCC-------CCCCeEeechHHHhhhcc
Q 047084          156 SFK-DALVHPEQYRS----SEDAEMEEEWDLEPGD-VTIGDD-------GTMPTIKFSKRIQDKLIK  209 (437)
Q Consensus       156 ~~~-~~~l~~n~l~~----~~~~~~~~~L~L~~n~-l~~~~~-------~~lp~l~l~~n~l~~l~~  209 (437)
                      .+. .+.+++|++..    ......++.|++++|+ ++....       ..+..+.++.|.+..++.
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~  222 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS  222 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred             cceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence            566 78888998822    1122467889999995 874432       356677888877776554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=1.3e-16  Score=161.12  Aligned_cols=175  Identities=16%  Similarity=0.130  Sum_probs=117.6

Q ss_pred             CEEEecCCCCCcCC-ccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084            1 KVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         1 ~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l   79 (437)
                      ++|+|++|.++.++ ..|.++++|++|+|++|.+..+++ +..+++|++|++++|.++.+|..    ++|++|++++|.+
T Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l  111 (487)
T 3oja_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNI  111 (487)
T ss_dssp             CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCC
T ss_pred             cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcC
Confidence            46888888887775 467888888888888888864444 77888888888888877776643    7788888888888


Q ss_pred             ccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHhc---cccccc-CCchhh-cCCCCCeEEeeCCcCCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQL---RNLLKT-IPPPLA-ADRSTKKARFRSHEVDA  149 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l---~n~~~~-ip~~~~-~l~~L~~L~l~~N~l~~  149 (437)
                      ++.      +.  ..+++|+.|++++|..     ..+..+..|+.+   +|.+.. .|..+. .+++|++|+|++|.|++
T Consensus       112 ~~~------~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          112 SRV------SC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CCE------EE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCC------Cc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            743      22  2457788888888872     223333333333   555543 455665 67888888888888874


Q ss_pred             CCCC--CchhhhhhcCCCCCC----CCchhccceeeecCCCCccc
Q 047084          150 DSPS--PLSFKDALVHPEQYR----SSEDAEMEEEWDLEPGDVTI  188 (437)
Q Consensus       150 ~~p~--~~~~~~~~l~~n~l~----~~~~~~~~~~L~L~~n~l~~  188 (437)
                      ..+.  ..++..+.+++|.+.    .+.....++.|+|++|+++.
T Consensus       184 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             ccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc
Confidence            3221  225566777777772    12233446778888888763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=2.6e-16  Score=141.82  Aligned_cols=127  Identities=18%  Similarity=0.301  Sum_probs=101.7

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCccccc-chhhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~n~   78 (437)
                      +.++++++.++++|..+.  .+|+.|++++|.|..+|+ .+..+++|++|++++|.+..+ |..|.++++|++|+|++|+
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            468899999999998775  689999999999987775 688899999999998888887 5679999999999999999


Q ss_pred             ccccccccccccc-ccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCC
Q 047084           79 YTAGFAAAKLHEG-FGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDAD  150 (437)
Q Consensus        79 l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~  150 (437)
                      ++      .+|.. |..+++|++|++++|....               ..|..+..+++|++|+|++|+|++.
T Consensus        92 l~------~l~~~~f~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~  143 (220)
T 2v9t_B           92 IT------ELPKSLFEGLFSLQLLLLNANKINC---------------LRVDAFQDLHNLNLLSLYDNKLQTI  143 (220)
T ss_dssp             CC------CCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CC------ccCHhHccCCCCCCEEECCCCCCCE---------------eCHHHcCCCCCCCEEECCCCcCCEE
Confidence            98      44544 7889999999999975321               1234566666777777777777643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=2.4e-17  Score=169.61  Aligned_cols=250  Identities=15%  Similarity=0.081  Sum_probs=127.4

Q ss_pred             EEecCC-CC-CcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            3 LDLEDA-PV-DYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         3 L~L~~n-~l-~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++++++ .+ +.+|..+..+++|+.|++++|.+..+|..+..+ +|++|++++|.+..+|.  ..+++|+.|++++|.+.
T Consensus       262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~  338 (570)
T 2z63_A          262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGG  338 (570)
T ss_dssp             EEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSC
T ss_pred             hhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccc
Confidence            344444 22 334555566666666666666666666655555 66666666555555554  34555555555555544


Q ss_pred             cccccccccccccCCccCcEEEeecCC-------hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEAD-------SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDAD  150 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~-------~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~  150 (437)
                      +..     +.  ..+++|+.|++++|.       +..+..+..|+.+   +|.+..+|..+..+++|++|++++|.+++.
T Consensus       339 ~~~-----~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          339 NAF-----SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             CBC-----CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred             ccc-----cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc
Confidence            321     11  444555555555554       1222222222222   344444444455555555555555555533


Q ss_pred             CCC-C----chhhhhhcCCCCC-----CCCchhccceeeecCCCCccc-------CCCCCCCeEeechHHHhhhcccccc
Q 047084          151 SPS-P----LSFKDALVHPEQY-----RSSEDAEMEEEWDLEPGDVTI-------GDDGTMPTIKFSKRIQDKLIKPWQN  213 (437)
Q Consensus       151 ~p~-~----~~~~~~~l~~n~l-----~~~~~~~~~~~L~L~~n~l~~-------~~~~~lp~l~l~~n~l~~l~~~~~~  213 (437)
                      .|. .    .++..+.++.|.+     ..+.....++.|++++|+++.       .....+..+.++.|.+.+..+.+..
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  491 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  491 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence            221 1    1333444455544     111223334555555555541       1113444455555544444221111


Q ss_pred             eEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEEEEeCChhhH
Q 047084          214 SVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDA  263 (437)
Q Consensus       214 ~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~~d~  263 (437)
                       ...++..++++.|.+++..+..+.....++.+++++|.+....+...-.
T Consensus       492 -~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          492 -SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             -TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             -cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence             0123444566777777766677888889999999999988666554444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.66  E-value=8.9e-17  Score=153.21  Aligned_cols=191  Identities=15%  Similarity=0.126  Sum_probs=140.0

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l   79 (437)
                      ++|+|++|.++.+++ .+.++++|++|+|++|.+..+++ +..+++|++|++++|.++.+|.    +++|++|++++|++
T Consensus        37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l  111 (317)
T 3o53_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNI  111 (317)
T ss_dssp             SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCC
T ss_pred             CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCcc
Confidence            589999999988864 78999999999999999976554 8899999999999998887774    48999999999999


Q ss_pred             ccccccccccccccCCccCcEEEeecCChH-----hH---hhccchHhcccccccCC-chh-hcCCCCCeEEeeCCcCCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----AL---KELMKLRQLRNLLKTIP-PPL-AADRSTKKARFRSHEVDA  149 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~---~~L~~L~~l~n~~~~ip-~~~-~~l~~L~~L~l~~N~l~~  149 (437)
                      ++.      +.  ..+++|++|++++|...     .+   ++|+.|...+|.+..++ ..+ ..+++|++|++++|.+++
T Consensus       112 ~~~------~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          112 SRV------SC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             SEE------EE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCc------Cc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            843      32  34678999999999732     23   33444444466666553 445 378999999999999984


Q ss_pred             CCCCC---chhhhhhcCCCCCCC----CchhccceeeecCCCCcccCCC-----CCCCeEeechHHHh
Q 047084          150 DSPSP---LSFKDALVHPEQYRS----SEDAEMEEEWDLEPGDVTIGDD-----GTMPTIKFSKRIQD  205 (437)
Q Consensus       150 ~~p~~---~~~~~~~l~~n~l~~----~~~~~~~~~L~L~~n~l~~~~~-----~~lp~l~l~~n~l~  205 (437)
                      . |..   .++..+.+++|++..    +.....++.|+|++|+++..+.     ..+..+.++.|.+.
T Consensus       184 ~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          184 V-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             E-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             c-ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            3 332   366778888998822    2334456889999999984332     34455555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=2.9e-16  Score=160.48  Aligned_cols=165  Identities=18%  Similarity=0.161  Sum_probs=130.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|+|++|.++.+|..+.  ++|++|+|++|.|+.+|   ..+++|++|++++|.++.+|. +.+  +|++|++++|+++
T Consensus        62 ~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~  133 (571)
T 3cvr_A           62 SELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT  133 (571)
T ss_dssp             SEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCS
T ss_pred             cEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCC
Confidence            479999999999998774  78999999999999998   458999999999999998998 765  9999999999998


Q ss_pred             cccccccccccccCCccCcEEEeecCChHhH----hhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCc-
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL----KELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPL-  155 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~----~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~-  155 (437)
                      +      +|.   .+++|+.|++++|....+    .+|..|...+|.++.+|. +.  ++|+.|+|++|+|+ .+|. + 
T Consensus       134 ~------lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~  199 (571)
T 3cvr_A          134 M------LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VP  199 (571)
T ss_dssp             C------CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC
T ss_pred             C------CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HH
Confidence            4      465   688999999999985433    355555555788888888 65  89999999999999 6776 4 


Q ss_pred             -hh-------hhhhcCCCCCCC----CchhccceeeecCCCCcc
Q 047084          156 -SF-------KDALVHPEQYRS----SEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       156 -~~-------~~~~l~~n~l~~----~~~~~~~~~L~L~~n~l~  187 (437)
                       ++       ..+.+++|++..    ......++.|+|++|+++
T Consensus       200 ~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          200 VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             --------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence             34       556677777722    122334577888888876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=4.4e-17  Score=172.07  Aligned_cols=149  Identities=17%  Similarity=0.134  Sum_probs=105.4

Q ss_pred             CCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccc
Q 047084           13 LPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGF   92 (437)
Q Consensus        13 lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~   92 (437)
                      .|..+..+..|+.|+|++|.+..+|..++++++|++|+|++|.+..+|..|++|++|++|+|++|.|+      .+|..|
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~------~lp~~~  289 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT------SLPAEL  289 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS------SCCSSG
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC------ccChhh
Confidence            35567788888888888888888888888888888888888888888888888888888888888887      568888


Q ss_pred             cCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCchh-----hhhhcCCCCC
Q 047084           93 GSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSF-----KDALVHPEQY  167 (437)
Q Consensus        93 ~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-----~~~~l~~n~l  167 (437)
                      +.|++|++|+|++|                .++.+|..|+.+++|++|+|++|.|++.+|..+..     ..+.++.|.+
T Consensus       290 ~~l~~L~~L~L~~N----------------~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          290 GSCFQLKYFYFFDN----------------MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             GGGTTCSEEECCSS----------------CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cCCCCCCEEECCCC----------------CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence            88888888888875                35678988999999999999999999887776532     2234566665


Q ss_pred             CCCchhccceeeecCCC
Q 047084          168 RSSEDAEMEEEWDLEPG  184 (437)
Q Consensus       168 ~~~~~~~~~~~L~L~~n  184 (437)
                      .. .....+..|+++.|
T Consensus       354 ~~-~~p~~l~~l~l~~n  369 (727)
T 4b8c_D          354 EI-PLPHERRFIEINTD  369 (727)
T ss_dssp             CC-CCCCC---------
T ss_pred             cC-cCccccceeEeecc
Confidence            22 11223344566665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.65  E-value=6e-17  Score=163.54  Aligned_cols=213  Identities=13%  Similarity=0.105  Sum_probs=153.2

Q ss_pred             CCcCCccccCCC----CCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccc
Q 047084           10 VDYLPEGVGNLF----NLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFA   84 (437)
Q Consensus        10 l~~lp~~~~~l~----~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~   84 (437)
                      ...+|..+..+.    +|++|+|++|.+..++ ..+..+++|++|+|++|.+..+++ ++.+++|++|++++|.+++   
T Consensus        19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~---   94 (487)
T 3oja_A           19 DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE---   94 (487)
T ss_dssp             TTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE---
T ss_pred             hhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC---
Confidence            345566665554    8999999999997665 689999999999999888877665 9999999999999999983   


Q ss_pred             cccccccccCCccCcEEEeecCCh-----HhHhhccchHhcccccccC-CchhhcCCCCCeEEeeCCcCCCCCCCCc---
Q 047084           85 AAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQLRNLLKTI-PPPLAADRSTKKARFRSHEVDADSPSPL---  155 (437)
Q Consensus        85 ~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~l~n~~~~i-p~~~~~l~~L~~L~l~~N~l~~~~p~~~---  155 (437)
                         +|.    .++|++|++++|..     ..+++|..|...+|.+..+ |..++.+++|++|+|++|.+++..|..+   
T Consensus        95 ---l~~----~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~  167 (487)
T 3oja_A           95 ---LLV----GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS  167 (487)
T ss_dssp             ---EEE----CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             ---CCC----CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence               343    38999999999983     3345666666667777655 5678889999999999999997666543   


Q ss_pred             --hhhhhhcCCCCCCC---CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHH
Q 047084          156 --SFKDALVHPEQYRS---SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLC  230 (437)
Q Consensus       156 --~~~~~~l~~n~l~~---~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~  230 (437)
                        ++..+.+++|.+..   ......++.|+|++|+++..++          . +..         ..++..+++++|.+.
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~-~~~---------l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP----------E-FQS---------AAGVTWISLRNNKLV  227 (487)
T ss_dssp             TTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG----------G-GGG---------GTTCSEEECTTSCCC
T ss_pred             CCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCH----------h-HcC---------CCCccEEEecCCcCc
Confidence              45567778888722   2234456778888888863211          0 110         012333445555555


Q ss_pred             HHHHhcccCCCceEEEEcCCcEEE
Q 047084          231 NRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       231 ~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                      + ++..+.....+..+++++|.+.
T Consensus       228 ~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          228 L-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             E-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             c-cchhhccCCCCCEEEcCCCCCc
Confidence            3 4555667788899999998876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.64  E-value=3.4e-16  Score=151.91  Aligned_cols=141  Identities=15%  Similarity=0.203  Sum_probs=105.6

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChh-hh-cccCCCEEEccCCcccccch-hhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKS-IG-NLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~-~~-~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n   77 (437)
                      ++++++++.++.+|..+.  ..++.|+|++|+|..++.. +. ++++|++|+|++|.+..+++ .|.++++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            468999999999998765  3589999999999877755 54 89999999999999998876 4899999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCCh-----HhHhhccchHh---cccccccCCchh----hcCCCCCeEEeeCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELMKLRQ---LRNLLKTIPPPL----AADRSTKKARFRSH  145 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~~L~~---l~n~~~~ip~~~----~~l~~L~~L~l~~N  145 (437)
                      ++++..     +..|..+++|+.|+|++|+.     ..+..+..|+.   .+|.+..+|..+    ..+++|+.|+|++|
T Consensus        99 ~l~~~~-----~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           99 HLHTLD-----EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             cCCcCC-----HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            998432     34588999999999999872     22333333333   356666666543    35666777777777


Q ss_pred             cCC
Q 047084          146 EVD  148 (437)
Q Consensus       146 ~l~  148 (437)
                      +|+
T Consensus       174 ~l~  176 (361)
T 2xot_A          174 KLK  176 (361)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            776

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=133.86  Aligned_cols=126  Identities=17%  Similarity=0.297  Sum_probs=110.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l   79 (437)
                      +++++++|.++++|..+.  .+|++|++++|.|..+|..+.++++|++|++++|.++.++.. |.++++|++|+|++|++
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            478999999999998764  589999999999999999999999999999999999988764 99999999999999999


Q ss_pred             ccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~  149 (437)
                      ++..     |..|..+++|+.|++++|.                +..+|. .+..+++|+.|+|++|++..
T Consensus        91 ~~i~-----~~~f~~l~~L~~L~L~~N~----------------l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           91 RCIP-----PRTFDGLKSLRLLSLHGND----------------ISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CBCC-----TTTTTTCTTCCEEECCSSC----------------CCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEeC-----HHHhCCCCCCCEEECCCCC----------------CCeeChhhhhcCccccEEEeCCCCeec
Confidence            9543     5569999999999999874                344554 57789999999999999984

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.63  E-value=3.9e-16  Score=148.12  Aligned_cols=156  Identities=25%  Similarity=0.327  Sum_probs=126.7

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.+..++. +.++++|++|++++|.+..++ .+..+++|++|++++|.++.+|. +..+++|++|++++|.++
T Consensus        66 ~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~  142 (308)
T 1h6u_A           66 IGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT  142 (308)
T ss_dssp             CEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             CEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccC
Confidence            589999999999987 999999999999999998775 68999999999999999998876 999999999999999998


Q ss_pred             cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCC--
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSP--  152 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p--  152 (437)
                      +.      +. ++.+++|+.|++++|....   +..+..|+.+   +|.+..++. +..+++|++|++++|++++..|  
T Consensus       143 ~~------~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~  214 (308)
T 1h6u_A          143 NI------SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLA  214 (308)
T ss_dssp             CC------GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGGGT
T ss_pred             cC------cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccccc
Confidence            43      43 8899999999999998333   3334444433   677777775 8899999999999999995432  


Q ss_pred             CCchhhhhhcCCCCC
Q 047084          153 SPLSFKDALVHPEQY  167 (437)
Q Consensus       153 ~~~~~~~~~l~~n~l  167 (437)
                      ...++..+.+++|.+
T Consensus       215 ~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          215 NTSNLFIVTLTNQTI  229 (308)
T ss_dssp             TCTTCCEEEEEEEEE
T ss_pred             CCCCCCEEEccCCee
Confidence            112455566777766

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=7.6e-16  Score=132.51  Aligned_cols=131  Identities=16%  Similarity=0.175  Sum_probs=97.9

Q ss_pred             CEEEecCCCCC--cCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccc-cchhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRE-LPVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~-lp~~~~~L~~L~~L~l~~n   77 (437)
                      ++|++++|.++  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+.++++|++|++++|
T Consensus        27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  105 (168)
T 2ell_A           27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN  105 (168)
T ss_dssp             SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred             CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence            46788888886  7777778888888888888888766 667778888888888777766 6666777888888888888


Q ss_pred             ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCc----hhhcCCCCCeEEeeCCcCCCCCCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPP----PLAADRSTKKARFRSHEVDADSPS  153 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~----~~~~l~~L~~L~l~~N~l~~~~p~  153 (437)
                      .+++..    .+..+..+++|+.|++++|.                +..+|.    .+..+++|++|++++|.+. .+|.
T Consensus       106 ~l~~~~----~~~~l~~l~~L~~L~l~~N~----------------l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          106 KLKDIS----TLEPLKKLECLKSLDLFNCE----------------VTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             SCCSSG----GGGGGSSCSCCCEEECCSSG----------------GGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             ccCcch----hHHHHhcCCCCCEEEeeCCc----------------CcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            887431    12567788888888888764                333443    6778888999999999887 4554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.63  E-value=1.8e-15  Score=137.13  Aligned_cols=130  Identities=26%  Similarity=0.371  Sum_probs=113.8

Q ss_pred             CEEEecCCCCCcC-CccccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.+..+ |..|.++++|++|+|++|.|+.+|.. +..+++|++|++++|.++.+|.. |..+++|++|++++|
T Consensus        43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  122 (229)
T 3e6j_A           43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN  122 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence            5899999999888 55789999999999999999988854 68899999999999999999876 789999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCCCCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDADSP  152 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~~~p  152 (437)
                      +++      .+|..+..+++|++|++++|+                +..+| ..+..+++|+.|++++|+++..-+
T Consensus       123 ~l~------~lp~~~~~l~~L~~L~L~~N~----------------l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          123 KLT------ELPRGIERLTHLTHLALDQNQ----------------LKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCC------SCCTTGGGCTTCSEEECCSSC----------------CCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ccc------ccCcccccCCCCCEEECCCCc----------------CCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            998      678889999999999999874                33445 457789999999999999996543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=2.9e-15  Score=133.58  Aligned_cols=144  Identities=21%  Similarity=0.315  Sum_probs=98.8

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      +.++.+++.+.++|..+  .++|++|++++|.+..+++. +.++++|++|++++|.++.+|.. |..+++|++|++++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            35778888888888765  35899999999999877654 67899999999998888888775 6889999999999998


Q ss_pred             cccccccccccccccCCccCcEEEeecCChHh-----Hhhc---cchHhcccccccCCch-hhcCCCCCeEEeeCCcCCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA-----LKEL---MKLRQLRNLLKTIPPP-LAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-----~~~L---~~L~~l~n~~~~ip~~-~~~l~~L~~L~l~~N~l~~  149 (437)
                      +++..     +..|..+++|++|++++|....     +..+   +.|...+|.+..+|.. +..+++|++|++++|++.+
T Consensus        88 l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           88 LQSLP-----NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCccC-----HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            88432     3447888999999998876221     2222   2222223444444432 4455555555555555554


Q ss_pred             CC
Q 047084          150 DS  151 (437)
Q Consensus       150 ~~  151 (437)
                      ..
T Consensus       163 ~~  164 (208)
T 2o6s_A          163 TC  164 (208)
T ss_dssp             CT
T ss_pred             CC
Confidence            33

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.61  E-value=1.6e-15  Score=156.47  Aligned_cols=137  Identities=22%  Similarity=0.326  Sum_probs=82.8

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.+..+| .+..|++|+.|+|++|.|..+++ +..+++|++|+|++|.+..+| .+..|++|++|+|++|.++
T Consensus        46 ~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~  122 (605)
T 1m9s_A           46 DQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS  122 (605)
T ss_dssp             CCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC
T ss_pred             CEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC
Confidence            35667777776665 46667777777777777766555 667777777777766666655 5667777777777777766


Q ss_pred             cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      +      + ..+..+++|+.|+|++|....   +..+..|+.|   +|.+..+++ +..+++|+.|+|++|+|+
T Consensus       123 ~------l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          123 D------I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             C------C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             C------C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence            3      2 236667777777777765322   2222222222   344444433 555555555555555555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=7.2e-16  Score=142.87  Aligned_cols=156  Identities=19%  Similarity=0.219  Sum_probs=108.8

Q ss_pred             EEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccc
Q 047084            3 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAG   82 (437)
Q Consensus         3 L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~   82 (437)
                      +++++|.++.++ .+..+.+|++|++++|.+..+| .+..+++|++|++++|.++.+|+ +.++++|++|++++|++++ 
T Consensus        24 l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~-   99 (263)
T 1xeu_A           24 QNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-   99 (263)
T ss_dssp             HHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-
T ss_pred             HHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC-
Confidence            457778888776 6788888999999999888887 68888999999999888888887 8889999999999998884 


Q ss_pred             cccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCCCch
Q 047084           83 FAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLS  156 (437)
Q Consensus        83 ~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~~~~  156 (437)
                           +|. +.. ++|+.|++++|+...   +..+..|+.+   +|.+..+| .+..+++|+.|++++|++++. +    
T Consensus       100 -----l~~-~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~----  166 (263)
T 1xeu_A          100 -----LNG-IPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G----  166 (263)
T ss_dssp             -----CTT-CCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T----
T ss_pred             -----cCc-ccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H----
Confidence                 343 222 888999998887332   2222222222   45555554 466667777777777776642 1    


Q ss_pred             hhhhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084          157 FKDALVHPEQYRSSEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       157 ~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~  187 (437)
                                  .+.....++.|++++|+++
T Consensus       167 ------------~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          167 ------------GLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             ------------TSTTCCCCCEEEEEEEEEE
T ss_pred             ------------HhccCCCCCEEeCCCCccc
Confidence                        1112233566788888876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=6.8e-16  Score=137.70  Aligned_cols=147  Identities=20%  Similarity=0.250  Sum_probs=119.4

Q ss_pred             CEEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|++++|.++.+|.. +.++++|++|++++|++..+|.. +.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN  110 (208)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence            5799999999988775 68999999999999999888754 67899999999999999988876 789999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCChH-----hHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      ++++..     +..|..+++|++|++++|...     .+..+..|+.+   +|.+      ...+++|+.|+++.|+++|
T Consensus       111 ~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          111 QLQSLP-----DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCCCCC-----TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHCTT
T ss_pred             cCcccC-----HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe------ecCCCCHHHHHHHHHhCCc
Confidence            998432     345789999999999999732     23344444443   4422      2456789999999999999


Q ss_pred             CCCCCchhh
Q 047084          150 DSPSPLSFK  158 (437)
Q Consensus       150 ~~p~~~~~~  158 (437)
                      .+|..++-.
T Consensus       180 ~ip~~~~~l  188 (208)
T 2o6s_A          180 VVRNSAGSV  188 (208)
T ss_dssp             TBBCTTSSB
T ss_pred             eeeccCccc
Confidence            999877543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.60  E-value=6.4e-16  Score=146.73  Aligned_cols=165  Identities=14%  Similarity=0.081  Sum_probs=124.9

Q ss_pred             CCCCCcEEEeecccCc-ccChhh--hcccCCCEEEccCCcccc-cc----hhhcCCcCCcEEeceeeccccccccccccc
Q 047084           19 NLFNLHYLSVKNTKVK-IIPKSI--GNLLGLETLDLKNTLVRE-LP----VEIRNLKRLRYLMVYQYNYTAGFAAAKLHE   90 (437)
Q Consensus        19 ~l~~L~~L~L~~n~l~-~lp~~~--~~l~~L~~L~l~~~~~~~-lp----~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~   90 (437)
                      .+++|++|++++|.+. ..|..+  ..+++|++|++++|.++. .|    ..+..+++|++|++++|.+++..     |.
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~  163 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS-----CE  163 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC-----TT
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh-----HH
Confidence            3567999999999995 677777  889999999999887764 23    23568999999999999998543     57


Q ss_pred             cccCCccCcEEEeecCChH------------hHhhccchHhcccccccCCch----hhcCCCCCeEEeeCCcCCCCCCCC
Q 047084           91 GFGSLTNLQKLCIIEADSE------------ALKELMKLRQLRNLLKTIPPP----LAADRSTKKARFRSHEVDADSPSP  154 (437)
Q Consensus        91 ~~~~l~~L~~L~l~~n~~~------------~~~~L~~L~~l~n~~~~ip~~----~~~l~~L~~L~l~~N~l~~~~p~~  154 (437)
                      .|+.+++|++|++++|+..            .+++|+.|...+|.+..+|..    +..+++|++|+|++|++++..|..
T Consensus       164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            7899999999999999732            123344444446777666642    468899999999999999876654


Q ss_pred             c-------hhhhhhcCCCCCCCC--chhccceeeecCCCCccc
Q 047084          155 L-------SFKDALVHPEQYRSS--EDAEMEEEWDLEPGDVTI  188 (437)
Q Consensus       155 ~-------~~~~~~l~~n~l~~~--~~~~~~~~L~L~~n~l~~  188 (437)
                      +       ++..+.+++|++...  .....++.|+|++|+++.
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS
T ss_pred             HHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC
Confidence            3       566778888888321  112456778999999874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.60  E-value=2e-15  Score=145.88  Aligned_cols=183  Identities=16%  Similarity=0.156  Sum_probs=133.7

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcc-cccchh-hcCCcCCcE-Eecee
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLV-RELPVE-IRNLKRLRY-LMVYQ   76 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~-~~lp~~-~~~L~~L~~-L~l~~   76 (437)
                      ++++.++++++++|..+.  +++++|+|++|+|+.+|+ +|.++++|++|+|++|.+ +.+|.+ |.++++|++ +.++.
T Consensus        12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            467889999999998773  689999999999999986 588999999999997775 567764 789999876 56677


Q ss_pred             eccccccccccccccccCCccCcEEEeecCChHhHhh--------ccchHhc-ccccccCCc-hhhcC-CCCCeEEeeCC
Q 047084           77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKE--------LMKLRQL-RNLLKTIPP-PLAAD-RSTKKARFRSH  145 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~--------L~~L~~l-~n~~~~ip~-~~~~l-~~L~~L~l~~N  145 (437)
                      |++++..     |..|..+++|++|++++|+...++.        +..|... ++.+..+|. .+..+ ..++.|+|++|
T Consensus        90 N~l~~l~-----~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           90 NNLLYIN-----PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             TTCCEEC-----TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             CcccccC-----chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence            8888432     5668999999999999998443322        1222222 245666764 45555 46899999999


Q ss_pred             cCCCCCCCC-c---hhhhhhcC-CCCCC-----CCchhccceeeecCCCCcccCCC
Q 047084          146 EVDADSPSP-L---SFKDALVH-PEQYR-----SSEDAEMEEEWDLEPGDVTIGDD  191 (437)
Q Consensus       146 ~l~~~~p~~-~---~~~~~~l~-~n~l~-----~~~~~~~~~~L~L~~n~l~~~~~  191 (437)
                      +|+ .+|.. +   ++..+.+. .|.+.     .+.....++.|||++|+++..+.
T Consensus       165 ~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          165 GIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             CCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             ccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence            999 45543 3   45566665 46662     23445567889999999985443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=2.9e-15  Score=138.79  Aligned_cols=138  Identities=17%  Similarity=0.202  Sum_probs=116.8

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.++.+| .+..+++|++|+|++|+|..+|+ +.++++|++|++++|.++.+|....  ++|++|++++|+++
T Consensus        44 ~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~  119 (263)
T 1xeu_A           44 QNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELR  119 (263)
T ss_dssp             SEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCS
T ss_pred             cEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccC
Confidence            57999999999998 78999999999999999988877 9999999999999999999887443  99999999999998


Q ss_pred             cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDAD  150 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~  150 (437)
                      +      ++ .+..+++|+.|++++|+...   +..+..|+.+   +|.+..+ ..+..+++|+.|++++|++++.
T Consensus       120 ~------~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          120 D------TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             B------SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             C------Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence            4      34 58899999999999998433   3333334333   6777777 6788999999999999999853

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.59  E-value=3.5e-15  Score=140.38  Aligned_cols=138  Identities=23%  Similarity=0.304  Sum_probs=117.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.++.++. +.++++|++|++++|.+..+|. +..+++|++|++++|.++.++ .+..+++|++|++++|+++
T Consensus        71 ~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~  147 (291)
T 1h6t_A           71 TKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT  147 (291)
T ss_dssp             CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             CEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCC
Confidence            589999999999977 9999999999999999988754 899999999999999998884 6899999999999999998


Q ss_pred             cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      +      + ..+..+++|+.|++++|....   +..+..|+.+   +|.+..+|. +..+++|+.|++++|+++.
T Consensus       148 ~------~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          148 D------I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             C------C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             c------c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence            4      3 468899999999999998332   3344444443   778888874 8899999999999999984

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=5.4e-15  Score=124.48  Aligned_cols=122  Identities=19%  Similarity=0.150  Sum_probs=79.2

Q ss_pred             CEEEecCCCCC--cCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccc-cchhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRE-LPVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~-lp~~~~~L~~L~~L~l~~n   77 (437)
                      ++|++++|.++  .+|..+..+++|++|++++|.+..+ ..++++++|++|++++|.++. +|..++.+++|++|++++|
T Consensus        20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N   98 (149)
T 2je0_A           20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN   98 (149)
T ss_dssp             SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred             eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence            45677777776  6666667777777777777777655 566677777777777666665 5665666777777777777


Q ss_pred             ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCc----hhhcCCCCCeEEee
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPP----PLAADRSTKKARFR  143 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~----~~~~l~~L~~L~l~  143 (437)
                      .+++.    ..+..++.+++|++|++++|..                ..+|.    .+..+++|+.|+++
T Consensus        99 ~i~~~----~~~~~~~~l~~L~~L~l~~N~l----------------~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           99 KIKDL----STIEPLKKLENLKSLDLFNCEV----------------TNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CCCSH----HHHGGGGGCTTCCEEECTTCGG----------------GGSTTHHHHHHHHCTTCCEETTB
T ss_pred             cCCCh----HHHHHHhhCCCCCEEeCcCCcc----------------cchHHHHHHHHHHCCCcccccCC
Confidence            77632    1125566777777777776542                22332    45666777777665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.56  E-value=1.7e-15  Score=147.13  Aligned_cols=234  Identities=12%  Similarity=0.077  Sum_probs=142.7

Q ss_pred             EEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccC-----hhhhccc-CCCEEEccCCccccc-chhhcCC-----cC
Q 047084            2 VLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIP-----KSIGNLL-GLETLDLKNTLVREL-PVEIRNL-----KR   68 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp-----~~~~~l~-~L~~L~l~~~~~~~l-p~~~~~L-----~~   68 (437)
                      +++++.|.++...+. +....+|++|+|++|.++..+     ..+.+++ +|++|++++|.++.. +..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            567888888655344 455556888888888887665     4566777 788888887777765 3345554     88


Q ss_pred             CcEEeceeeccccccccccccccccCC-ccCcEEEeecCChHh-----H--------hhccchHhcccccc-----cCCc
Q 047084           69 LRYLMVYQYNYTAGFAAAKLHEGFGSL-TNLQKLCIIEADSEA-----L--------KELMKLRQLRNLLK-----TIPP  129 (437)
Q Consensus        69 L~~L~l~~n~l~~~~~~~~lp~~~~~l-~~L~~L~l~~n~~~~-----~--------~~L~~L~~l~n~~~-----~ip~  129 (437)
                      |++|++++|.+++..+ ..+...+..+ ++|++|++++|....     +        .+|+.|...+|.++     .++.
T Consensus        82 L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSS-DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ccEEECcCCcCChHHH-HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            8888888888875431 1122234444 788888888887221     1        13444444456555     3344


Q ss_pred             hhhcCC-CCCeEEeeCCcCCCCCCCC---------chhhhhhcCCCCCCCC------c---h-hccceeeecCCCCcccC
Q 047084          130 PLAADR-STKKARFRSHEVDADSPSP---------LSFKDALVHPEQYRSS------E---D-AEMEEEWDLEPGDVTIG  189 (437)
Q Consensus       130 ~~~~l~-~L~~L~l~~N~l~~~~p~~---------~~~~~~~l~~n~l~~~------~---~-~~~~~~L~L~~n~l~~~  189 (437)
                      .+..++ +|++|+|++|++++..+..         -++..+.+++|.+...      .   . ...++.|+|++|+++..
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            555555 8888888888887544321         1455566777776220      0   0 12467788888888622


Q ss_pred             C----------CCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084          190 D----------DGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       190 ~----------~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                      .          ...+..+.++.|.+..+                 +.. ....+...+.....++.+++++|.+.
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i-----------------~~~-~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNM-----------------SKE-QCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTC-----------------CHH-HHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCcccc-----------------CHH-HHHHHHHHhccCCceEEEecCCCcCC
Confidence            1          12233333333332211                 111 12456677888899999999999865

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=2.9e-15  Score=145.39  Aligned_cols=144  Identities=23%  Similarity=0.322  Sum_probs=120.6

Q ss_pred             CEEEecCCCCCcCCcc-cc-CCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEecee
Q 047084            1 KVLDLEDAPVDYLPEG-VG-NLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQ   76 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~-~~-~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~   76 (437)
                      ++|+|++|+|+.++.. +. ++.+|++|+|++|+|..++ ..|.++++|++|+|++|.+..+|.. |.++++|++|+|++
T Consensus        42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  121 (361)
T 2xot_A           42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN  121 (361)
T ss_dssp             SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC
Confidence            5799999999999775 55 8999999999999998776 5689999999999999999998875 89999999999999


Q ss_pred             eccccccccccccccccCCccCcEEEeecCChHh-----------HhhccchHhcccccccCC-chhhcCCC--CCeEEe
Q 047084           77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA-----------LKELMKLRQLRNLLKTIP-PPLAADRS--TKKARF  142 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-----------~~~L~~L~~l~n~~~~ip-~~~~~l~~--L~~L~l  142 (437)
                      |++++..     |..|..+++|+.|+|++|....           +++|..|...+|.+..+| ..+..++.  |+.|+|
T Consensus       122 N~i~~~~-----~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l  196 (361)
T 2xot_A          122 NHIVVVD-----RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL  196 (361)
T ss_dssp             SCCCEEC-----TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred             CcccEEC-----HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence            9998543     6779999999999999998322           334444554578888888 46777876  488999


Q ss_pred             eCCcCCC
Q 047084          143 RSHEVDA  149 (437)
Q Consensus       143 ~~N~l~~  149 (437)
                      ++|++.-
T Consensus       197 ~~N~~~C  203 (361)
T 2xot_A          197 HNNPLEC  203 (361)
T ss_dssp             CSSCEEC
T ss_pred             cCCCccC
Confidence            9999983

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.56  E-value=9.5e-15  Score=129.15  Aligned_cols=148  Identities=15%  Similarity=0.155  Sum_probs=112.6

Q ss_pred             ccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCc
Q 047084           17 VGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLT   96 (437)
Q Consensus        17 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~   96 (437)
                      ...+++|+.|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+++.     .|..++.++
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~  112 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSD-----KIPNLSGLT  112 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGG-----GSCCCTTCT
T ss_pred             hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcc-----cChhhcCCC
Confidence            367889999999999999888 7999999999999988777665 688999999999999999853     377799999


Q ss_pred             cCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCc-CCCCCCCC---chhhhhhcCCCCCCC---
Q 047084           97 NLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHE-VDADSPSP---LSFKDALVHPEQYRS---  169 (437)
Q Consensus        97 ~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~-l~~~~p~~---~~~~~~~l~~n~l~~---  169 (437)
                      +|++|++++|...               ...|..+..+++|++|++++|. ++ .+|..   .++..+.+++|++..   
T Consensus       113 ~L~~L~Ls~n~i~---------------~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~~~~  176 (197)
T 4ezg_A          113 SLTLLDISHSAHD---------------DSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDYRG  176 (197)
T ss_dssp             TCCEEECCSSBCB---------------GGGHHHHTTCSSCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCCCTT
T ss_pred             CCCEEEecCCccC---------------cHhHHHHhhCCCCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcChHH
Confidence            9999999997532               2345677889999999999998 65 55521   145566677777622   


Q ss_pred             CchhccceeeecCCCCcc
Q 047084          170 SEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       170 ~~~~~~~~~L~L~~n~l~  187 (437)
                      ......++.|++++|++.
T Consensus       177 l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          177 IEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GGGCSSCCEEEECBC---
T ss_pred             hccCCCCCEEEeeCcccC
Confidence            222334566777777764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=9.1e-15  Score=154.40  Aligned_cols=102  Identities=26%  Similarity=0.352  Sum_probs=97.2

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|+|++|.+..+|..++++++|++|+|++|.|..+|..|++|++|++|+|++|.++.+|..|++|++|++|+|++|.|+
T Consensus       227 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             CEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC
T ss_pred             cEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccccccccccCCccCcEEEeecCCh
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADS  108 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~  108 (437)
                            .+|..|+.+++|++|+|++|.+
T Consensus       307 ------~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          307 ------TLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             ------CCCSSTTSCTTCCCEECTTSCC
T ss_pred             ------ccChhhhcCCCccEEeCCCCcc
Confidence                  6788899999999999999983

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=3e-14  Score=123.57  Aligned_cols=129  Identities=20%  Similarity=0.328  Sum_probs=108.6

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      +.+++++|.++.+|..+.  ++|+.|++++|++..+|+ .+.++++|++|++++|.++.+|.. +.++++|++|++++|+
T Consensus        10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            468999999999997654  689999999999987775 468899999999999999999876 7999999999999999


Q ss_pred             cccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCch-hhcCCCCCeEEeeCCcCCCCCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPP-LAADRSTKKARFRSHEVDADSP  152 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~-~~~l~~L~~L~l~~N~l~~~~p  152 (437)
                      +++..     +..+..+++|++|++++|.                +..+|.. +..+++|++|++++|++++..|
T Consensus        88 l~~~~-----~~~~~~l~~L~~L~l~~N~----------------l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           88 LQSLP-----NGVFDKLTQLKELALDTNQ----------------LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCC-----TTTTTTCTTCCEEECCSSC----------------CSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccC-----HHHhhCCcccCEEECcCCc----------------ceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99542     3457899999999999864                3345544 5779999999999999997544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1.2e-14  Score=126.14  Aligned_cols=83  Identities=23%  Similarity=0.396  Sum_probs=42.4

Q ss_pred             ccCCCCCcEEEeecccCcccChhhhccc-CCCEEEccCCcccccchhhcCCcCCcEEeceeecccccccccccccc-ccC
Q 047084           17 VGNLFNLHYLSVKNTKVKIIPKSIGNLL-GLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGS   94 (437)
Q Consensus        17 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~-~~~   94 (437)
                      +.++.+|+.|++++|.+..+|. +..+. +|++|++++|.++.+ +.+..+++|++|++++|.++      .+|.. +..
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~------~~~~~~~~~   86 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC------RIGEGLDQA   86 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC------EECSCHHHH
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc------ccCcchhhc
Confidence            3445555555555555554432 33333 555555555555554 34555555555555555555      22322 255


Q ss_pred             CccCcEEEeecCC
Q 047084           95 LTNLQKLCIIEAD  107 (437)
Q Consensus        95 l~~L~~L~l~~n~  107 (437)
                      +++|++|++++|.
T Consensus        87 l~~L~~L~L~~N~   99 (176)
T 1a9n_A           87 LPDLTELILTNNS   99 (176)
T ss_dssp             CTTCCEEECCSCC
T ss_pred             CCCCCEEECCCCc
Confidence            5555555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.53  E-value=5.4e-15  Score=151.13  Aligned_cols=145  Identities=22%  Similarity=0.321  Sum_probs=98.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|+|++|.|+.+|   ..+++|++|+|++|.|+.+|. +.+  +|++|++++|.++.+|.   .+++|++|++++|.++
T Consensus        83 ~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A           83 TVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             SEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS
T ss_pred             CEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccC
Confidence            47888888888887   446788888888888877777 554  78888888777777777   5778888888888877


Q ss_pred             cccccccccccccCCccCcEEEeecCChHhH----hhccchHhcccccccCCchhhcCCCC-------CeEEeeCCcCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEAL----KELMKLRQLRNLLKTIPPPLAADRST-------KKARFRSHEVDA  149 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~----~~L~~L~~l~n~~~~ip~~~~~l~~L-------~~L~l~~N~l~~  149 (437)
                      +      +|.   .+++|++|++++|....+    .+|..|...+|.+..+|. +..  +|       +.|+|++|+|+ 
T Consensus       154 ~------lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-  220 (571)
T 3cvr_A          154 M------LPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-  220 (571)
T ss_dssp             C------CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-
T ss_pred             c------CCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-
Confidence            3      344   456777777777763333    244444444666667776 443  55       77777777777 


Q ss_pred             CCCCCc----hhhhhhcCCCCC
Q 047084          150 DSPSPL----SFKDALVHPEQY  167 (437)
Q Consensus       150 ~~p~~~----~~~~~~l~~n~l  167 (437)
                      .+|..+    ++..+.+++|.+
T Consensus       221 ~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          221 HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CCCGGGGGSCTTEEEECCSSSC
T ss_pred             ecCHHHhcCCCCCEEEeeCCcC
Confidence            566543    344556677766

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.53  E-value=9.4e-16  Score=147.04  Aligned_cols=180  Identities=10%  Similarity=0.042  Sum_probs=125.2

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCc-c-cChhhhcccCCCEEEccCCccc-ccchhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVK-I-IPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~n   77 (437)
                      ++|++++|.++..+..+.++++|++|++++|.+. . +|..+..+++|++|++++|.++ ..|..++.+++|++|++++|
T Consensus        73 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             eEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            4678888888777667778899999999999885 3 7777888999999999976665 56777888999999999988


Q ss_pred             -ccccccccccccccccCCccCcEEEeecC-Ch------HhHhhcc-chHhc---ccc--c--ccCCchhhcCCCCCeEE
Q 047084           78 -NYTAGFAAAKLHEGFGSLTNLQKLCIIEA-DS------EALKELM-KLRQL---RNL--L--KTIPPPLAADRSTKKAR  141 (437)
Q Consensus        78 -~l~~~~~~~~lp~~~~~l~~L~~L~l~~n-~~------~~~~~L~-~L~~l---~n~--~--~~ip~~~~~l~~L~~L~  141 (437)
                       .+++.    .++..+..+++|++|++++| ..      ..+..+. .|+.+   ++.  +  ..+|..+..+++|++|+
T Consensus       153 ~~l~~~----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          153 SGFSEF----ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             BSCCHH----HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCHH----HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence             56632    24666788889999999988 52      2233444 44444   442  2  45666777888999999


Q ss_pred             eeCCc-CCCCCCCCc----hhhhhhcCCCC-CC-----CCchhccceeeecCCC
Q 047084          142 FRSHE-VDADSPSPL----SFKDALVHPEQ-YR-----SSEDAEMEEEWDLEPG  184 (437)
Q Consensus       142 l~~N~-l~~~~p~~~----~~~~~~l~~n~-l~-----~~~~~~~~~~L~L~~n  184 (437)
                      +++|. +++..+..+    ++..+.+++|. +.     .+.....++.|++++|
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            99998 664444333    44555666663 31     1222334566777776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.51  E-value=2.5e-15  Score=147.06  Aligned_cols=230  Identities=13%  Similarity=0.166  Sum_probs=138.4

Q ss_pred             CcCCccccCCCCCcEEEeecccCcc-----cChhhhcccCCCEEEccCCccc----ccchhh-------cCCcCCcEEec
Q 047084           11 DYLPEGVGNLFNLHYLSVKNTKVKI-----IPKSIGNLLGLETLDLKNTLVR----ELPVEI-------RNLKRLRYLMV   74 (437)
Q Consensus        11 ~~lp~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~~~~~----~lp~~~-------~~L~~L~~L~l   74 (437)
                      ..++..+..+++|++|+|++|.++.     ++..+..+++|++|++++|.+.    .+|..+       ..+++|++|+|
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            4556667778889999999888853     3344667888999988865444    345444       68888999999


Q ss_pred             eeeccccccccccccccccCCccCcEEEeecCChH-----hHh----hc---------cchHhc---ccccc--cCC---
Q 047084           75 YQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALK----EL---------MKLRQL---RNLLK--TIP---  128 (437)
Q Consensus        75 ~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~----~L---------~~L~~l---~n~~~--~ip---  128 (437)
                      ++|.+++.. ...+|..+..+++|++|++++|...     .+.    .+         ..|+.+   +|.++  .+|   
T Consensus       102 s~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          102 SDNAFGPTA-QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CSCCCCTTT-HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCcCCHHH-HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            998887421 1135677888888999999888732     121    11         333333   55553  344   


Q ss_pred             chhhcCCCCCeEEeeCCcCC--C-------CCCCCchhhhhhcCCCCCC-----C----CchhccceeeecCCCCcccCC
Q 047084          129 PPLAADRSTKKARFRSHEVD--A-------DSPSPLSFKDALVHPEQYR-----S----SEDAEMEEEWDLEPGDVTIGD  190 (437)
Q Consensus       129 ~~~~~l~~L~~L~l~~N~l~--~-------~~p~~~~~~~~~l~~n~l~-----~----~~~~~~~~~L~L~~n~l~~~~  190 (437)
                      ..+..+++|++|++++|.++  |       .+....++..+.++.|.+.     .    +.....++.|+|++|+++.. 
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~-  259 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-  259 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH-
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh-
Confidence            45678889999999999887  2       1222234556666777661     0    11223456677777776511 


Q ss_pred             CCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHHHH----HHHhcc-cCCCceEEEEcCCcEEE
Q 047084          191 DGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCN----RLKVMW-HQIHDFSVIDLENNYFL  254 (437)
Q Consensus       191 ~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l~~----~l~~~w-~~~~~l~~l~l~~N~f~  254 (437)
                               ....   ++.........++..+++++|.+..    .++... ...+.++.+++++|.+.
T Consensus       260 ---------~~~~---l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          260 ---------GAAA---VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             ---------HHHH---HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ---------hHHH---HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence                     0000   0110000001123334455555544    244443 55688999999999876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.51  E-value=1.7e-15  Score=148.41  Aligned_cols=187  Identities=12%  Similarity=0.095  Sum_probs=125.0

Q ss_pred             CEEEecCCCCCcC-----CccccCCCCCcEEEeecccCc----ccChhh-------hcccCCCEEEccCCcccc-----c
Q 047084            1 KVLDLEDAPVDYL-----PEGVGNLFNLHYLSVKNTKVK----IIPKSI-------GNLLGLETLDLKNTLVRE-----L   59 (437)
Q Consensus         1 ~~L~L~~n~l~~l-----p~~~~~l~~L~~L~L~~n~l~----~lp~~~-------~~l~~L~~L~l~~~~~~~-----l   59 (437)
                      ++|+|++|.++..     +..+.++++|++|+|++|.+.    .+|..+       ..+++|++|++++|.++.     +
T Consensus        35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  114 (386)
T 2ca6_A           35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL  114 (386)
T ss_dssp             CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred             cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence            5788888887543     334668888999999887543    445444       578889999998777765     7


Q ss_pred             chhhcCCcCCcEEeceeeccccccccccccccccCC---------ccCcEEEeecCChH---------hHhhccchHhc-
Q 047084           60 PVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSL---------TNLQKLCIIEADSE---------ALKELMKLRQL-  120 (437)
Q Consensus        60 p~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l---------~~L~~L~l~~n~~~---------~~~~L~~L~~l-  120 (437)
                      |..+.++++|++|+|++|.+++.. ...++..+..+         ++|++|++++|+..         .+..+..|+.+ 
T Consensus       115 ~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  193 (386)
T 2ca6_A          115 IDFLSKHTPLEHLYLHNNGLGPQA-GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK  193 (386)
T ss_dssp             HHHHHHCTTCCEEECCSSCCHHHH-HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHhCCCCCEEECcCCCCCHHH-HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence            777888889999999998886321 11233444444         78889998888732         23334444444 


Q ss_pred             --ccccc------cCCchhhcCCCCCeEEeeCCcCC----CCCCC----CchhhhhhcCCCCCCCC------ch-----h
Q 047084          121 --RNLLK------TIPPPLAADRSTKKARFRSHEVD----ADSPS----PLSFKDALVHPEQYRSS------ED-----A  173 (437)
Q Consensus       121 --~n~~~------~ip~~~~~l~~L~~L~l~~N~l~----~~~p~----~~~~~~~~l~~n~l~~~------~~-----~  173 (437)
                        +|.++      .+|..+..+++|++|+|++|.++    +.+|.    ..++..+.+++|.+...      ..     .
T Consensus       194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  273 (386)
T 2ca6_A          194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN  273 (386)
T ss_dssp             CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred             CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence              45554      23346778888999999999885    23332    23566777888887321      11     3


Q ss_pred             ccceeeecCCCCccc
Q 047084          174 EMEEEWDLEPGDVTI  188 (437)
Q Consensus       174 ~~~~~L~L~~n~l~~  188 (437)
                      ..++.|+|++|+++.
T Consensus       274 ~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          274 IGLQTLRLQYNEIEL  288 (386)
T ss_dssp             CCCCEEECCSSCCBH
T ss_pred             CCeEEEECcCCcCCH
Confidence            446778999998873

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.51  E-value=4.2e-14  Score=145.94  Aligned_cols=138  Identities=22%  Similarity=0.290  Sum_probs=117.3

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|+|++|.+..+|+ +.++++|+.|+|++|.|..+| .+..+++|++|+|++|.+..+| .+..|++|+.|+|++|.++
T Consensus        68 ~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A           68 TKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             CEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC
T ss_pred             CEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC
Confidence            579999999999976 999999999999999998876 7899999999999999988875 5899999999999999998


Q ss_pred             cccccccccccccCCccCcEEEeecCChHh---HhhccchHh---cccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQ---LRNLLKTIPPPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~---l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      +      + ..+..+++|+.|+|++|....   +..+..|+.   .+|.+..+| .+..+++|+.|+|++|++++
T Consensus       145 ~------l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          145 D------I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             C------C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred             C------c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence            4      3 468899999999999998332   333444443   367777775 68999999999999999985

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.50  E-value=6.7e-14  Score=143.44  Aligned_cols=107  Identities=19%  Similarity=0.308  Sum_probs=71.6

Q ss_pred             CCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEE
Q 047084           22 NLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKL  101 (437)
Q Consensus        22 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L  101 (437)
                      .|+.|+|++|.|+.+|. ++++++|++|++++|.++.+|..+++|++|++|+|++|.++      .+| .++.+++|+.|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~------~lp-~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE------NVD-GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC------CCG-GGTTCSSCCEE
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC------CCc-ccCCCCCCcEE
Confidence            36677777777766665 66777777777776666677777777777777777777776      335 56677777777


Q ss_pred             EeecCChHhHhhccchHhcccccccC--CchhhcCCCCCeEEeeCCcCCCCCC
Q 047084          102 CIIEADSEALKELMKLRQLRNLLKTI--PPPLAADRSTKKARFRSHEVDADSP  152 (437)
Q Consensus       102 ~l~~n~~~~~~~L~~L~~l~n~~~~i--p~~~~~l~~L~~L~l~~N~l~~~~p  152 (437)
                      ++++|+                +..+  |..++.+++|+.|+|++|++++..|
T Consensus       514 ~Ls~N~----------------l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          514 LLCNNR----------------LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             ECCSSC----------------CCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ECCCCC----------------CCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            776653                2223  6666777777777777777775433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=4e-14  Score=127.43  Aligned_cols=128  Identities=20%  Similarity=0.320  Sum_probs=112.9

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|+|++|.|+.+|. .|.++++|++|+|++|+|..+ |..|.++++|++|+|++|.++.+|.. |.++++|++|+|++|
T Consensus        35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N  114 (220)
T 2v9t_B           35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN  114 (220)
T ss_dssp             CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence            579999999999976 689999999999999999765 67899999999999999999999987 789999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCC
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      ++++..     |..|..+++|+.|++++|.                +..++ ..+..+++|++|+|++|++..
T Consensus       115 ~l~~~~-----~~~~~~l~~L~~L~L~~N~----------------l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          115 KINCLR-----VDAFQDLHNLNLLSLYDNK----------------LQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCC-----TTTTTTCTTCCEEECCSSC----------------CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCEeC-----HHHcCCCCCCCEEECCCCc----------------CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999654     6779999999999999975                33344 457889999999999999984

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.49  E-value=6e-14  Score=123.46  Aligned_cols=104  Identities=20%  Similarity=0.313  Sum_probs=93.4

Q ss_pred             CEEEecCCCCCcCCcc--ccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEecee
Q 047084            1 KVLDLEDAPVDYLPEG--VGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQ   76 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~--~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~   76 (437)
                      ++|++++|.++.++..  +.++++|++|+|++|+|..+ |..+.++++|++|++++|.++.++.. |.++++|++|++++
T Consensus        32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            5799999999999764  89999999999999999765 67899999999999999999888775 89999999999999


Q ss_pred             eccccccccccccccccCCccCcEEEeecCChH
Q 047084           77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE  109 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~  109 (437)
                      |++++..     |..|..+++|++|++++|...
T Consensus       112 N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          112 NQISCVM-----PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCEEC-----TTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCeeC-----HHHhhcCCCCCEEEeCCCCcc
Confidence            9999653     778999999999999999843

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.48  E-value=1.2e-13  Score=133.26  Aligned_cols=161  Identities=12%  Similarity=0.084  Sum_probs=116.7

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccC-cccCh-hhhcccCCCEEE-ccCCcccccch-hhcCCcCCcEEece
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKV-KIIPK-SIGNLLGLETLD-LKNTLVRELPV-EIRNLKRLRYLMVY   75 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l-~~lp~-~~~~l~~L~~L~-l~~~~~~~lp~-~~~~L~~L~~L~l~   75 (437)
                      ++|+|++|+|+.+|+ .|.+|++|++|+|++|++ +.+|. .|.++++|+++. +++|.+..+|+ .|.++++|++|+++
T Consensus        33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~  112 (350)
T 4ay9_X           33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS  112 (350)
T ss_dssp             SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred             CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence            579999999999987 589999999999999998 56774 577899988754 55888888865 58999999999999


Q ss_pred             eeccccccccccccccccCCccCcEEEeecCC------hHhHhh----ccchHhcccccccCCchhhcCCCCCeEEeeC-
Q 047084           76 QYNYTAGFAAAKLHEGFGSLTNLQKLCIIEAD------SEALKE----LMKLRQLRNLLKTIPPPLAADRSTKKARFRS-  144 (437)
Q Consensus        76 ~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~------~~~~~~----L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~-  144 (437)
                      +|.+++..     +..+....++..|++.++.      ...+..    +..|..-+|.+..+|.......+|++|++++ 
T Consensus       113 ~n~l~~~~-----~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          113 NTGIKHLP-----DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EECCSSCC-----CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred             ccccccCC-----chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence            99998432     2334556667777776543      122222    3334444677777777666667788888875 


Q ss_pred             CcCCCCCCCC-c----hhhhhhcCCCCC
Q 047084          145 HEVDADSPSP-L----SFKDALVHPEQY  167 (437)
Q Consensus       145 N~l~~~~p~~-~----~~~~~~l~~n~l  167 (437)
                      |.++ .+|.. +    ++..+.+++|++
T Consensus       188 n~l~-~i~~~~f~~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          188 NNLE-ELPNDVFHGASGPVILDISRTRI  214 (350)
T ss_dssp             TTCC-CCCTTTTTTEECCSEEECTTSCC
T ss_pred             Cccc-CCCHHHhccCcccchhhcCCCCc
Confidence            4454 56643 2    456677778877

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.47  E-value=7.3e-14  Score=125.72  Aligned_cols=131  Identities=15%  Similarity=0.223  Sum_probs=113.4

Q ss_pred             CEEEecCCCCCcCCc--cccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEecee
Q 047084            1 KVLDLEDAPVDYLPE--GVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQ   76 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~   76 (437)
                      ++|+|++|.++.++.  .|.++++|++|+|++|.|..+++ .|.++++|++|++++|.+..+|.. |.++++|++|+|++
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  114 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS  114 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence            579999999998843  47899999999999999987765 799999999999999999988775 89999999999999


Q ss_pred             eccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCCC
Q 047084           77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADS  151 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~  151 (437)
                      |++++..     |..|..+++|++|++++|+..               +..|..+..+++|++|+|++|+++..-
T Consensus       115 N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          115 NRITCVG-----NDSFIGLSSVRLLSLYDNQIT---------------TVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SCCCCBC-----TTSSTTCTTCSEEECTTSCCC---------------CBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CcCCeEC-----HhHcCCCccCCEEECCCCcCC---------------EECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            9999653     677999999999999987422               223678889999999999999999643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=1.6e-13  Score=120.89  Aligned_cols=102  Identities=25%  Similarity=0.363  Sum_probs=92.6

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~   78 (437)
                      ++|+|++|.++.+|..|.++.+|++|+|++|.|..++ ..|.++++|++|++++|.+..+|+ .|.++++|++|+|++|.
T Consensus        34 ~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             CEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence            5799999999999999999999999999999998776 568999999999999999998877 49999999999999999


Q ss_pred             cccccccccccc-cccCCccCcEEEeecCCh
Q 047084           79 YTAGFAAAKLHE-GFGSLTNLQKLCIIEADS  108 (437)
Q Consensus        79 l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~~  108 (437)
                      +++      +|. .|..+++|+.|++++|..
T Consensus       114 l~~------~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          114 ISV------VPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCB------CCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCe------eChhhhhcCccccEEEeCCCCe
Confidence            994      454 588999999999999974

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.46  E-value=7.7e-16  Score=154.18  Aligned_cols=147  Identities=17%  Similarity=0.205  Sum_probs=88.2

Q ss_pred             CEEEecCCCCCcC-Cccc-cCCC----CCcEEEeecccCc-----ccChhhhcccCCCEEEccCCccccc-chhh-----
Q 047084            1 KVLDLEDAPVDYL-PEGV-GNLF----NLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVREL-PVEI-----   63 (437)
Q Consensus         1 ~~L~L~~n~l~~l-p~~~-~~l~----~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~l-p~~~-----   63 (437)
                      ++|+|++|.++.. +..+ ..+.    +|++|++++|.++     .++..+..+++|++|++++|.++.. +..+     
T Consensus        59 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  138 (461)
T 1z7x_W           59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL  138 (461)
T ss_dssp             CEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             CEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence            4678888877542 2233 3344    5888888888775     3566777778888888886666532 2212     


Q ss_pred             cCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHh-----Hh--------hccchHhccccccc----
Q 047084           64 RNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA-----LK--------ELMKLRQLRNLLKT----  126 (437)
Q Consensus        64 ~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-----~~--------~L~~L~~l~n~~~~----  126 (437)
                      ..+++|++|++++|.+++.. ...++..+..+++|++|++++|....     +.        +|+.|..-+|.++.    
T Consensus       139 ~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  217 (461)
T 1z7x_W          139 DPQCRLEKLQLEYCSLSAAS-CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  217 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGG-HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             cCCCcceEEECCCCCCCHHH-HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence            23556788888777776432 12345556667777777777776211     11        33333333444443    


Q ss_pred             -CCchhhcCCCCCeEEeeCCcCC
Q 047084          127 -IPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus       127 -ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                       ++..+..+++|++|++++|.++
T Consensus       218 ~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          218 DLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHHhCCCccEEeccCCcCC
Confidence             4555666677777777777765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=2e-13  Score=117.69  Aligned_cols=101  Identities=19%  Similarity=0.316  Sum_probs=87.7

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      +++++++|.++++|..+.  .+|++|+|++|.|..+ |..|.++++|++|++++|.+..+|+. |.++++|++|+|++|+
T Consensus        12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            478999999999998774  7899999999999877 56688999999999999999999886 6899999999999999


Q ss_pred             cccccccccccccccCCccCcEEEeecCCh
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS  108 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~  108 (437)
                      +++..     +..|..+++|++|++++|..
T Consensus        90 l~~~~-----~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           90 LKSIP-----RGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCC-----TTTTTTCTTCCEEECCSSCB
T ss_pred             cCEeC-----HHHhcCCCCCCEEEeCCCCC
Confidence            98432     34588999999999999974

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.46  E-value=1.4e-14  Score=140.60  Aligned_cols=186  Identities=11%  Similarity=0.107  Sum_probs=133.3

Q ss_pred             CEEEecCCCCCcCC-----ccccCCC-CCcEEEeecccCccc-Chhhhcc-----cCCCEEEccCCcccccchh-----h
Q 047084            1 KVLDLEDAPVDYLP-----EGVGNLF-NLHYLSVKNTKVKII-PKSIGNL-----LGLETLDLKNTLVRELPVE-----I   63 (437)
Q Consensus         1 ~~L~L~~n~l~~lp-----~~~~~l~-~L~~L~L~~n~l~~l-p~~~~~l-----~~L~~L~l~~~~~~~lp~~-----~   63 (437)
                      ++|||++|.++..+     ..+.+++ +|++|+|++|.++.. +..+..+     ++|++|++++|.++..+..     +
T Consensus        25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l  104 (362)
T 3goz_A           25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL  104 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred             eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence            58999999998886     4577888 899999999999754 4667665     9999999998888866543     4


Q ss_pred             cCC-cCCcEEeceeeccccccccccccccccCC-ccCcEEEeecCChH-----hH--------hhccchHhcccccccCC
Q 047084           64 RNL-KRLRYLMVYQYNYTAGFAAAKLHEGFGSL-TNLQKLCIIEADSE-----AL--------KELMKLRQLRNLLKTIP  128 (437)
Q Consensus        64 ~~L-~~L~~L~l~~n~l~~~~~~~~lp~~~~~l-~~L~~L~l~~n~~~-----~~--------~~L~~L~~l~n~~~~ip  128 (437)
                      ..+ ++|++|++++|.+++.. ...+...+..+ ++|++|++++|...     .+        .+|+.|...+|.++...
T Consensus       105 ~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          105 AAIPFTITVLDLGWNDFSSKS-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HTSCTTCCEEECCSSCGGGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HhCCCCccEEECcCCcCCcHH-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence            555 89999999999998543 11222334453 69999999999843     22        24555555567775554


Q ss_pred             -c----hhhcC-CCCCeEEeeCCcCCCC----CCCC-----chhhhhhcCCCCCCCC---------chhccceeeecCCC
Q 047084          129 -P----PLAAD-RSTKKARFRSHEVDAD----SPSP-----LSFKDALVHPEQYRSS---------EDAEMEEEWDLEPG  184 (437)
Q Consensus       129 -~----~~~~l-~~L~~L~l~~N~l~~~----~p~~-----~~~~~~~l~~n~l~~~---------~~~~~~~~L~L~~n  184 (437)
                       .    .+... ++|++|+|++|.|++.    ++..     .++..+.+++|.+...         .....++.|+|++|
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence             2    34455 5999999999999852    2221     2566778889988332         22344688999999


Q ss_pred             Ccc
Q 047084          185 DVT  187 (437)
Q Consensus       185 ~l~  187 (437)
                      .++
T Consensus       264 ~l~  266 (362)
T 3goz_A          264 IVK  266 (362)
T ss_dssp             HHT
T ss_pred             Ccc
Confidence            965

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.46  E-value=1.7e-14  Score=138.29  Aligned_cols=182  Identities=13%  Similarity=0.120  Sum_probs=136.8

Q ss_pred             CEEEecCCCCCc--CCccccCCCCCcEEEeecccCc-ccChhhhcccCCCEEEccCC-ccc--ccchhhcCCcCCcEEec
Q 047084            1 KVLDLEDAPVDY--LPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKNT-LVR--ELPVEIRNLKRLRYLMV   74 (437)
Q Consensus         1 ~~L~L~~n~l~~--lp~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~~-~~~--~lp~~~~~L~~L~~L~l   74 (437)
                      ++|++++|.+..  +|..+.++++|++|++++|.++ ..+..++.+++|++|++++| .++  .+|..+.++++|++|++
T Consensus        96 ~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l  175 (336)
T 2ast_B           96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  175 (336)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence            579999999854  7777899999999999999985 67788999999999999976 666  37777899999999999


Q ss_pred             eee-ccccccccccccccccCCc-cCcEEEeecCC--------hHhHhhccchHhc---ccc-c-ccCCchhhcCCCCCe
Q 047084           75 YQY-NYTAGFAAAKLHEGFGSLT-NLQKLCIIEAD--------SEALKELMKLRQL---RNL-L-KTIPPPLAADRSTKK  139 (437)
Q Consensus        75 ~~n-~l~~~~~~~~lp~~~~~l~-~L~~L~l~~n~--------~~~~~~L~~L~~l---~n~-~-~~ip~~~~~l~~L~~  139 (437)
                      ++| .+++.    .++..+..++ +|++|++++|.        +..+..+.+|+.+   ++. + ...+..+..+++|++
T Consensus       176 ~~~~~l~~~----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~  251 (336)
T 2ast_B          176 SWCFDFTEK----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  251 (336)
T ss_dssp             CCCTTCCHH----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             CCCCCcChH----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence            999 88742    2567788899 99999999984        2223344444444   454 3 456678899999999


Q ss_pred             EEeeCCc-CCCC----CCCCchhhhhhcCCCCCCCCch---hccceeeecCCCCcc
Q 047084          140 ARFRSHE-VDAD----SPSPLSFKDALVHPEQYRSSED---AEMEEEWDLEPGDVT  187 (437)
Q Consensus       140 L~l~~N~-l~~~----~p~~~~~~~~~l~~n~l~~~~~---~~~~~~L~L~~n~l~  187 (437)
                      |++++|. ++..    +....++..+.+++| ++....   ...+..|+++.|+++
T Consensus       252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~  306 (336)
T 2ast_B          252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFT  306 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred             eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCc
Confidence            9999995 3321    222225566677777 532221   123567899999998

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=2.5e-13  Score=117.50  Aligned_cols=101  Identities=16%  Similarity=0.367  Sum_probs=83.7

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      +++++++|.++++|..+.  .+|++|+|++|+|..+ |..+.++++|++|+|++|.++.+|.. |.++++|++|+|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            468899999999988775  7899999999999766 46788899999999998888888886 6889999999999999


Q ss_pred             ccccccccccccc-ccCCccCcEEEeecCChH
Q 047084           79 YTAGFAAAKLHEG-FGSLTNLQKLCIIEADSE  109 (437)
Q Consensus        79 l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~  109 (437)
                      +++      +|.. |..+++|++|++++|...
T Consensus        93 l~~------l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKS------IPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCC------CCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cce------eCHHHhccccCCCEEEeCCCCcc
Confidence            883      4544 788888888888888743

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.44  E-value=1.5e-14  Score=144.68  Aligned_cols=204  Identities=13%  Similarity=0.092  Sum_probs=133.3

Q ss_pred             CEEEecCCCCCcCCc--cccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCccccc-chh-hcCCc----
Q 047084            1 KVLDLEDAPVDYLPE--GVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVREL-PVE-IRNLK----   67 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~l-p~~-~~~L~----   67 (437)
                      ++|||++|.++..+.  .+..+++|++|++++|.++     .++..+..+++|++|++++|.++.. +.. +..++    
T Consensus         6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~   85 (461)
T 1z7x_W            6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC   85 (461)
T ss_dssp             EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred             eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence            478999998866543  2678889999999999986     4567788889999999997777653 223 33455    


Q ss_pred             CCcEEeceeeccccccccccccccccCCccCcEEEeecCChH-----hHh--------hccchHhccccccc-----CCc
Q 047084           68 RLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE-----ALK--------ELMKLRQLRNLLKT-----IPP  129 (437)
Q Consensus        68 ~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-----~~~--------~L~~L~~l~n~~~~-----ip~  129 (437)
                      +|++|++++|.++... ...+|..+..+++|++|++++|...     .+.        +|+.|...+|.+..     ++.
T Consensus        86 ~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAG-CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTSCCBGGG-HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEccCCCCCHHH-HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            6999999999887321 1245777888999999999998732     121        24444444555432     455


Q ss_pred             hhhcCCCCCeEEeeCCcCCCCCCCC---------chhhhhhcCCCCCCCCc---------hhccceeeecCCCCcccC--
Q 047084          130 PLAADRSTKKARFRSHEVDADSPSP---------LSFKDALVHPEQYRSSE---------DAEMEEEWDLEPGDVTIG--  189 (437)
Q Consensus       130 ~~~~l~~L~~L~l~~N~l~~~~p~~---------~~~~~~~l~~n~l~~~~---------~~~~~~~L~L~~n~l~~~--  189 (437)
                      .+..+++|++|++++|.++...+..         ..+..+.+++|.+....         ....++.|++++|+++..  
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            6677888999999998887321111         14555667777763211         123456788888876521  


Q ss_pred             ---------CCCCCCeEeechHHHh
Q 047084          190 ---------DDGTMPTIKFSKRIQD  205 (437)
Q Consensus       190 ---------~~~~lp~l~l~~n~l~  205 (437)
                               ....+..+.++.+.+.
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~  269 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGIT  269 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCC
Confidence                     1245555665555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=4.1e-14  Score=125.12  Aligned_cols=120  Identities=17%  Similarity=0.198  Sum_probs=84.8

Q ss_pred             CCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccccccccccc
Q 047084           10 VDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLH   89 (437)
Q Consensus        10 l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp   89 (437)
                      ++++|..+.++++|++|++++|.+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++|++++      +|
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~------l~  109 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS------LS  109 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC------HH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc------CC
Confidence            4445456777777777777777776676 7777777777777777777777767777777777777777763      34


Q ss_pred             ccccCCccCcEEEeecCChHhHhhccchHhcccccccCC--chhhcCCCCCeEEeeCCcCCCCCCC
Q 047084           90 EGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP--PPLAADRSTKKARFRSHEVDADSPS  153 (437)
Q Consensus        90 ~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip--~~~~~l~~L~~L~l~~N~l~~~~p~  153 (437)
                       .+..+++|+.|++++|+.                ..+|  ..+..+++|++|++++|++++..|.
T Consensus       110 -~~~~l~~L~~L~l~~N~i----------------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          110 -GIEKLVNLRVLYMSNNKI----------------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             -HHHHHHHSSEEEESEEEC----------------CCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             -ccccCCCCCEEECCCCcC----------------CchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence             466677777777777643                2222  2567788899999999988865443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.38  E-value=1.4e-12  Score=111.91  Aligned_cols=101  Identities=17%  Similarity=0.228  Sum_probs=90.7

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcc-cChhhhcccCCCEEEccCCcccccc--hhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKI-IPKSIGNLLGLETLDLKNTLVRELP--VEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~~~~~~lp--~~~~~L~~L~~L~l~~n   77 (437)
                      ++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+.++++|++|++++|.++.+|  ..+..+++|++|++++|
T Consensus        52 ~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A           52 EFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             CEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             CEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            5899999999888 788999999999999999976 7777888999999999999999987  67999999999999999


Q ss_pred             ccccccccccccc----cccCCccCcEEEeecCCh
Q 047084           78 NYTAGFAAAKLHE----GFGSLTNLQKLCIIEADS  108 (437)
Q Consensus        78 ~l~~~~~~~~lp~----~~~~l~~L~~L~l~~n~~  108 (437)
                      .+++.      |.    .+..+++|++|++++|..
T Consensus       131 ~l~~~------~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          131 EVTNL------NDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             GGGTS------TTHHHHHHTTCSSCCEETTEETTS
T ss_pred             cCcch------HHHHHHHHHhCccCcEecCCCCCh
Confidence            99843      54    688999999999999863

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.37  E-value=7.3e-13  Score=114.71  Aligned_cols=128  Identities=16%  Similarity=0.262  Sum_probs=106.9

Q ss_pred             CEEEecCCCCCcCCccccCCC-CCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhh-cCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLF-NLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEI-RNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~-~~L~~L~~L~l~~n~   78 (437)
                      ++|++++|.++.+|. +..+. +|++|++++|.|..+ +.+..+++|++|++++|.++.+|+.+ ..+++|++|++++|.
T Consensus        22 ~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~   99 (176)
T 1a9n_A           22 RELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS   99 (176)
T ss_dssp             EEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred             eEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc
Confidence            479999999999964 55555 999999999999877 67899999999999999999998774 999999999999999


Q ss_pred             cccccccccccc--cccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           79 YTAGFAAAKLHE--GFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        79 l~~~~~~~~lp~--~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      ++      .+|.  .+..+++|+.|++++|....++...            ...+..+++|+.|++++|.+.
T Consensus       100 i~------~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~------------~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          100 LV------ELGDLDPLASLKSLTYLCILRNPVTNKKHYR------------LYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CC------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHH------------HHHHHHCTTCSEETTEECCHH
T ss_pred             CC------cchhhHhhhcCCCCCEEEecCCCCCCcHhHH------------HHHHHHCCccceeCCCcCCHH
Confidence            97      4565  7889999999999999764422100            013678899999999999886

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=1.7e-12  Score=133.12  Aligned_cols=99  Identities=19%  Similarity=0.282  Sum_probs=51.7

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTA   81 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~   81 (437)
                      +|+|++|.|+.+|. ++++++|+.|+|++|.|..+|..++++++|++|+|++|.++.+| .+++|++|++|+|++|++++
T Consensus       445 ~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~  522 (567)
T 1dce_A          445 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ  522 (567)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred             EEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCC
Confidence            45555555555554 55555555555555555555555555555555555555555555 45555555555555555552


Q ss_pred             ccccccccccccCCccCcEEEeecC
Q 047084           82 GFAAAKLHEGFGSLTNLQKLCIIEA  106 (437)
Q Consensus        82 ~~~~~~lp~~~~~l~~L~~L~l~~n  106 (437)
                      ..    .|..++.+++|+.|++++|
T Consensus       523 ~~----~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          523 SA----AIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             SS----TTGGGGGCTTCCEEECTTS
T ss_pred             CC----CcHHHhcCCCCCEEEecCC
Confidence            10    0444555555555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.36  E-value=2.4e-12  Score=111.44  Aligned_cols=102  Identities=26%  Similarity=0.431  Sum_probs=90.3

Q ss_pred             CEEEecCCCCCcCCcc-ccCCCCCcEEEeecccCcccChh-hhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTKVKIIPKS-IGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n   77 (437)
                      ++|++++|.++.+|.. +.++++|++|++++|.+..+|+. +.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN  110 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence            5799999999998774 68999999999999999888754 68899999999999999998876 789999999999999


Q ss_pred             cccccccccccccc-ccCCccCcEEEeecCCh
Q 047084           78 NYTAGFAAAKLHEG-FGSLTNLQKLCIIEADS  108 (437)
Q Consensus        78 ~l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~  108 (437)
                      .+++      +|.. +..+++|++|++++|..
T Consensus       111 ~l~~------~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          111 QLKS------VPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CCSC------CCTTTTTTCTTCCEEECCSSCB
T ss_pred             cceE------eCHHHhcCCcccCEEEecCCCe
Confidence            9984      3544 68899999999999984

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=6.5e-14  Score=123.83  Aligned_cols=135  Identities=20%  Similarity=0.147  Sum_probs=107.7

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.++.+| .+.++++|++|++++|.+..+|..+..+++|++|++++|.++.+| .+..+++|++|++++|+++
T Consensus        51 ~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~  128 (198)
T 1ds9_A           51 KHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             SEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECC
T ss_pred             CEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCC
Confidence            58999999999998 899999999999999999999998888999999999999999888 6999999999999999998


Q ss_pred             cccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      +..   . ...+..+++|++|++++|.......-      .+.....+ ..+..+++|+.|+  +|.++.
T Consensus       129 ~~~---~-~~~l~~l~~L~~L~l~~N~l~~~~~~------~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          129 NWG---E-IDKLAALDKLEDLLLAGNPLYNDYKE------NNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             CHH---H-HHHHTTTTTCSEEEECSCHHHHHHHT------TTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             chh---H-HHHHhcCCCCCEEEecCCcccccccc------ccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            431   0 13688999999999999975433110      01111111 2467788999886  777763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.33  E-value=1.4e-12  Score=109.56  Aligned_cols=101  Identities=17%  Similarity=0.218  Sum_probs=87.1

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcc-cChhhhcccCCCEEEccCCcccccc--hhhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKI-IPKSIGNLLGLETLDLKNTLVRELP--VEIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~~~~~~lp--~~~~~L~~L~~L~l~~n   77 (437)
                      ++|++++|.++.+ ..+.++++|++|++++|.+.. +|..+..+++|++|++++|.++.+|  ..++.+++|++|++++|
T Consensus        45 ~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           45 EFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             CEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             cEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            5899999999888 788999999999999999976 7777888999999999999999876  67999999999999999


Q ss_pred             cccccccccccc-ccccCCccCcEEEeec
Q 047084           78 NYTAGFAAAKLH-EGFGSLTNLQKLCIIE  105 (437)
Q Consensus        78 ~l~~~~~~~~lp-~~~~~l~~L~~L~l~~  105 (437)
                      .+++..   ..+ ..+..+++|+.|++++
T Consensus       124 ~l~~~~---~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          124 EVTNLN---DYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GGGGST---THHHHHHHHCTTCCEETTBC
T ss_pred             cccchH---HHHHHHHHHCCCcccccCCC
Confidence            998542   000 3588999999998763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=6.7e-12  Score=108.42  Aligned_cols=106  Identities=23%  Similarity=0.305  Sum_probs=89.9

Q ss_pred             CcEEEeecccCcccChhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeecccccccccccccc-ccCCccCcE
Q 047084           23 LHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSLTNLQK  100 (437)
Q Consensus        23 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~-~~~l~~L~~  100 (437)
                      -+.+++++|.++.+|..+.  ++|++|++++|.+..+++ .|+++++|++|+|++|++++      +|.. |..+++|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA------IPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc------cChhHhCCcchhhE
Confidence            4789999999999998775  899999999999988854 69999999999999999994      4554 689999999


Q ss_pred             EEeecCChHhHhhccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCCCCCCC
Q 047084          101 LCIIEADSEALKELMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVDADSPS  153 (437)
Q Consensus       101 L~l~~n~~~~~~~L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~~~p~  153 (437)
                      |++++|+                +..+|. .+..+++|++|+|++|++.. .+.
T Consensus        86 L~L~~N~----------------l~~l~~~~~~~l~~L~~L~L~~N~~~c-~~~  122 (174)
T 2r9u_A           86 LDLNDNH----------------LKSIPRGAFDNLKSLTHIYLYNNPWDC-ECR  122 (174)
T ss_dssp             EECCSSC----------------CCCCCTTTTTTCTTCSEEECCSSCBCT-TBG
T ss_pred             EECCCCc----------------cceeCHHHhccccCCCEEEeCCCCccc-ccc
Confidence            9999864                445565 48889999999999999994 444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=7.1e-12  Score=107.83  Aligned_cols=106  Identities=19%  Similarity=0.205  Sum_probs=89.6

Q ss_pred             CCcEEEeecccCcccChhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeeccccccccccccccccCCccCcE
Q 047084           22 NLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQK  100 (437)
Q Consensus        22 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~  100 (437)
                      ..+.+++++|.+..+|..+.  ++|++|++++|.+..+++ .|.++++|++|+|++|++++..     +..|..+++|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-----~~~f~~l~~L~~   82 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-----AGVFDKLTQLTQ   82 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-----TTTTTTCTTCCE
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-----hhhccCCCCCCE
Confidence            46889999999999998764  899999999999988854 5999999999999999999442     345789999999


Q ss_pred             EEeecCChHhHhhccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCCCC
Q 047084          101 LCIIEADSEALKELMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVDAD  150 (437)
Q Consensus       101 L~l~~n~~~~~~~L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~~  150 (437)
                      |++++|+                +..+|. .+..+++|++|+|++|+++..
T Consensus        83 L~L~~N~----------------l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           83 LSLNDNQ----------------LKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             EECCSSC----------------CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             EECCCCc----------------cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999864                344554 588999999999999999954

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=1.5e-11  Score=118.21  Aligned_cols=101  Identities=19%  Similarity=0.170  Sum_probs=85.8

Q ss_pred             EEEecCC-CCCcCCccccCCCCCcEEEeec-ccCcccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceee
Q 047084            2 VLDLEDA-PVDYLPEGVGNLFNLHYLSVKN-TKVKIIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQY   77 (437)
Q Consensus         2 ~L~L~~n-~l~~lp~~~~~l~~L~~L~L~~-n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n   77 (437)
                      .++++++ .++.+|. +..+.+|+.|+|++ |.|..+| ..|.+|++|++|+|++|.+..+|+ .|.+|++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4688888 8999999 99999999999996 9998777 568899999999999888888876 5899999999999999


Q ss_pred             cccccccccccccc-ccCCccCcEEEeecCChHh
Q 047084           78 NYTAGFAAAKLHEG-FGSLTNLQKLCIIEADSEA  110 (437)
Q Consensus        78 ~l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~~  110 (437)
                      +|++      +|.. |..+. |+.|+|.+|.+..
T Consensus        91 ~l~~------~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALES------LSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSC------CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ccce------eCHHHcccCC-ceEEEeeCCCccC
Confidence            9984      4544 45555 9999999998543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=1.4e-10  Score=111.52  Aligned_cols=104  Identities=14%  Similarity=0.179  Sum_probs=87.6

Q ss_pred             cEEEeecc-cCcccChhhhcccCCCEEEccC-Ccccccch-hhcCCcCCcEEeceeeccccccccccccccccCCccCcE
Q 047084           24 HYLSVKNT-KVKIIPKSIGNLLGLETLDLKN-TLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQK  100 (437)
Q Consensus        24 ~~L~L~~n-~l~~lp~~~~~l~~L~~L~l~~-~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~  100 (437)
                      ..++.+++ .|..+|. +..+++|++|+|++ |.++.+|+ .|++|++|++|+|++|+|++..     |..|.++++|+.
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~   84 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-----PDAFHFTPRLSR   84 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-----TTGGGSCSCCCE
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-----HHHhcCCcCCCE
Confidence            45688888 8999999 99999999999995 99999986 5999999999999999999653     567899999999


Q ss_pred             EEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCC
Q 047084          101 LCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus       101 L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      |+|++|+                +..+|..+....+|+.|+|++|++..
T Consensus        85 L~l~~N~----------------l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           85 LNLSFNA----------------LESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             EECCSSC----------------CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             EeCCCCc----------------cceeCHHHcccCCceEEEeeCCCccC
Confidence            9999975                34566544433349999999999984

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.09  E-value=1.8e-12  Score=133.89  Aligned_cols=143  Identities=15%  Similarity=0.078  Sum_probs=77.6

Q ss_pred             CEEEecCCCCCcC-----CccccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCcccccchhhcCCcCCc
Q 047084            1 KVLDLEDAPVDYL-----PEGVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLR   70 (437)
Q Consensus         1 ~~L~L~~n~l~~l-----p~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~   70 (437)
                      ++|+|++|.+...     +..+.++++|++|++++|.+.     .++..+.++++|++|+++++.+..+|..+.++++|+
T Consensus       167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~  246 (592)
T 3ogk_B          167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE  246 (592)
T ss_dssp             SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCC
T ss_pred             CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHH
Confidence            4677777765332     222355667777777777664     233344566777777777666666666666666666


Q ss_pred             EEeceeeccccc---------------------cccccccccccCCccCcEEEeecCCh------HhHhhccchHhc---
Q 047084           71 YLMVYQYNYTAG---------------------FAAAKLHEGFGSLTNLQKLCIIEADS------EALKELMKLRQL---  120 (437)
Q Consensus        71 ~L~l~~n~l~~~---------------------~~~~~lp~~~~~l~~L~~L~l~~n~~------~~~~~L~~L~~l---  120 (437)
                      +|+++.+.....                     .....+|..+..+++|++|++++|..      ..+..+.+|+.+   
T Consensus       247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             hhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            666653211100                     00123455566777788888877761      112333333333   


Q ss_pred             cccc-ccCCchhhcCCCCCeEEee
Q 047084          121 RNLL-KTIPPPLAADRSTKKARFR  143 (437)
Q Consensus       121 ~n~~-~~ip~~~~~l~~L~~L~l~  143 (437)
                      ++.. ..++..+..+++|++|+++
T Consensus       327 ~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          327 NVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             CccCHHHHHHHHHhCCCCCEEEee
Confidence            2211 1223333456777777777

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.97  E-value=6.7e-12  Score=129.50  Aligned_cols=99  Identities=14%  Similarity=0.015  Sum_probs=50.3

Q ss_pred             EEEecCCCCCcC-----CccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccC-----------------------
Q 047084            2 VLDLEDAPVDYL-----PEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKN-----------------------   53 (437)
Q Consensus         2 ~L~L~~n~l~~l-----p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~-----------------------   53 (437)
                      +|++++|.++.+     +..+.++++|+.|++++|.+..+|..+.++++|++|+++.                       
T Consensus       196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L  275 (592)
T 3ogk_B          196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL  275 (592)
T ss_dssp             EEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEE
T ss_pred             EEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccccc
Confidence            456666655422     2223455666666666666555555555555555555541                       


Q ss_pred             ----CcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEee
Q 047084           54 ----TLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCII  104 (437)
Q Consensus        54 ----~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~  104 (437)
                          .....+|..+..+++|++|++++|.+++.    .++..+..+++|+.|+++
T Consensus       276 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~----~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETE----DHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             EETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH----HHHHHHTTCTTCCEEEEE
T ss_pred             CccccchhHHHHHHhhcCCCcEEecCCCcCCHH----HHHHHHHhCcCCCEEecc
Confidence                11122344445555666666666654422    122334555666666665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=8.9e-10  Score=105.10  Aligned_cols=73  Identities=19%  Similarity=0.321  Sum_probs=51.8

Q ss_pred             CEEEecCCCCC--------------------cCCc-cccC--------CCCCcEEEeecccCcccCh-hhhcccCCCEEE
Q 047084            1 KVLDLEDAPVD--------------------YLPE-GVGN--------LFNLHYLSVKNTKVKIIPK-SIGNLLGLETLD   50 (437)
Q Consensus         1 ~~L~L~~n~l~--------------------~lp~-~~~~--------l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~   50 (437)
                      ++|||++|++.                    .+|+ .|.+        +.+|+.|+|++ .+..+++ +|.++++|++|+
T Consensus        52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~  130 (329)
T 3sb4_A           52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ  130 (329)
T ss_dssp             CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE
T ss_pred             eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEE
Confidence            57889888887                    4554 4667        89999999988 7877774 577899999999


Q ss_pred             ccCCcccccchh-hcCCcCCcEEec
Q 047084           51 LKNTLVRELPVE-IRNLKRLRYLMV   74 (437)
Q Consensus        51 l~~~~~~~lp~~-~~~L~~L~~L~l   74 (437)
                      +++|.+..+++. |.++.++..+.+
T Consensus       131 l~~n~i~~i~~~aF~~~~~l~~l~~  155 (329)
T 3sb4_A          131 IRKKTAPNLLPEALADSVTAIFIPL  155 (329)
T ss_dssp             BCCSSCCEECTTSSCTTTCEEEECT
T ss_pred             cCCCCccccchhhhcCCCceEEecC
Confidence            987776555543 444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.89  E-value=2.2e-10  Score=111.16  Aligned_cols=136  Identities=14%  Similarity=0.161  Sum_probs=87.0

Q ss_pred             CEEEecCCCCCcCCc-ccc-----CCCCCcEEEeecccCccc-Chhh-hcccCCCEEEccCCcccccchh-----h-cCC
Q 047084            1 KVLDLEDAPVDYLPE-GVG-----NLFNLHYLSVKNTKVKII-PKSI-GNLLGLETLDLKNTLVRELPVE-----I-RNL   66 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~-----~l~~L~~L~L~~n~l~~l-p~~~-~~l~~L~~L~l~~~~~~~lp~~-----~-~~L   66 (437)
                      ++|+|++|.++.... .+.     ...+|+.|+|++|.++.. ...+ ..+.+|++|+|++|.++.....     + ...
T Consensus        75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~  154 (372)
T 3un9_A           75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ  154 (372)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred             CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence            478899998865422 222     236899999999988531 2233 3477889999998877654322     2 346


Q ss_pred             cCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCc
Q 047084           67 KRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHE  146 (437)
Q Consensus        67 ~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~  146 (437)
                      ++|++|+|++|.++... ...++..+..+++|++|+|++|......           ...++..+...++|++|+|++|.
T Consensus       155 ~~L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~L~~L~Ls~N~l~~~g-----------~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAG-VAVLMEGLAGNTSVTHLSLLHTGLGDEG-----------LELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             CCCCEEECCSSCCHHHH-HHHHHHHHHTCSSCCEEECTTSSCHHHH-----------HHHHHHHGGGCSCCCEEECCSSC
T ss_pred             CccceeeCCCCCCChHH-HHHHHHHHhcCCCcCEEeCCCCCCCcHH-----------HHHHHHHHhcCCCcCeEECCCCC
Confidence            78999999999886321 1235566677888999999998743311           01122334445566677777776


Q ss_pred             CC
Q 047084          147 VD  148 (437)
Q Consensus       147 l~  148 (437)
                      |+
T Consensus       223 i~  224 (372)
T 3un9_A          223 AG  224 (372)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=8.9e-09  Score=98.12  Aligned_cols=78  Identities=14%  Similarity=0.223  Sum_probs=58.1

Q ss_pred             CCCCcEEEeecccCc--------------------ccC-hhhhc--------ccCCCEEEccCCcccccchh-hcCCcCC
Q 047084           20 LFNLHYLSVKNTKVK--------------------IIP-KSIGN--------LLGLETLDLKNTLVRELPVE-IRNLKRL   69 (437)
Q Consensus        20 l~~L~~L~L~~n~l~--------------------~lp-~~~~~--------l~~L~~L~l~~~~~~~lp~~-~~~L~~L   69 (437)
                      +.+|+.|||++|+|.                    .+| .+|.+        +++|+.|++.. .+..+++. |.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            788999999999987                    455 34667        89999999998 78888875 9999999


Q ss_pred             cEEeceeeccccccccccccccccCCccCcEEEe
Q 047084           70 RYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI  103 (437)
Q Consensus        70 ~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l  103 (437)
                      +.|++++|.++...     +..|.++.++..+.+
T Consensus       127 ~~l~l~~n~i~~i~-----~~aF~~~~~l~~l~~  155 (329)
T 3sb4_A          127 KICQIRKKTAPNLL-----PEALADSVTAIFIPL  155 (329)
T ss_dssp             CEEEBCCSSCCEEC-----TTSSCTTTCEEEECT
T ss_pred             ceEEcCCCCccccc-----hhhhcCCCceEEecC
Confidence            99999999876221     233555544544443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.67  E-value=1.4e-09  Score=105.42  Aligned_cols=156  Identities=11%  Similarity=0.104  Sum_probs=98.5

Q ss_pred             CCCCcEEEeecccCcccC-hhhhcc-----cCCCEEEccCCcccccch-h-hcCCcCCcEEeceeecccccccccccccc
Q 047084           20 LFNLHYLSVKNTKVKIIP-KSIGNL-----LGLETLDLKNTLVRELPV-E-IRNLKRLRYLMVYQYNYTAGFAAAKLHEG   91 (437)
Q Consensus        20 l~~L~~L~L~~n~l~~lp-~~~~~l-----~~L~~L~l~~~~~~~lp~-~-~~~L~~L~~L~l~~n~l~~~~~~~~lp~~   91 (437)
                      +++|+.|+|++|.++... ..+..+     .+|++|+|++|.++.... . ...+++|+.|+|++|.++... ...+...
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~-~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA-CKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH-HHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH-HHHHHHH
Confidence            467899999999986322 333333     689999999777654221 2 345678999999999887321 1122223


Q ss_pred             c-cCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCC--------CCCCchhhhhhc
Q 047084           92 F-GSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDAD--------SPSPLSFKDALV  162 (437)
Q Consensus        92 ~-~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~--------~p~~~~~~~~~l  162 (437)
                      + ...++|++|+|++|......           ...++..+...++|++|+|++|.|+..        +....++..+.+
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~-----------~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L  218 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAG-----------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV  218 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHH-----------HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred             HHhcCCccceeeCCCCCCChHH-----------HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence            3 34678999999998743321           112344566778999999999999731        112225666677


Q ss_pred             CCCCCCCCc---------hhccceeeecCCCCcc
Q 047084          163 HPEQYRSSE---------DAEMEEEWDLEPGDVT  187 (437)
Q Consensus       163 ~~n~l~~~~---------~~~~~~~L~L~~n~l~  187 (437)
                      ++|.+....         ....++.|+|++|.++
T Consensus       219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          219 AYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            777772211         1133566788888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.54  E-value=9.4e-09  Score=105.83  Aligned_cols=13  Identities=0%  Similarity=-0.043  Sum_probs=8.1

Q ss_pred             cceeeecCCCCcc
Q 047084          175 MEEEWDLEPGDVT  187 (437)
Q Consensus       175 ~~~~L~L~~n~l~  187 (437)
                      .++.|+|++|.++
T Consensus       482 ~L~~L~L~~n~~~  494 (594)
T 2p1m_B          482 SLRKLEIRDCPFG  494 (594)
T ss_dssp             TCCEEEEESCSCC
T ss_pred             CcCEEECcCCCCc
Confidence            3566677777653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.51  E-value=3.8e-08  Score=101.30  Aligned_cols=88  Identities=16%  Similarity=0.034  Sum_probs=45.4

Q ss_pred             CCCCCcEEEeecccCc-ccChhhh-cccCCCEEEccCC-cccc--cchhhcCCcCCcEEeceeecccccccccccccccc
Q 047084           19 NLFNLHYLSVKNTKVK-IIPKSIG-NLLGLETLDLKNT-LVRE--LPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFG   93 (437)
Q Consensus        19 ~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~l~~~-~~~~--lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~   93 (437)
                      .+++|+.|+|++|.++ ..+..+. .+++|++|+++++ .++.  ++.-+.++++|++|++++|.+++.. ...++....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~  181 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-GHWLSHFPD  181 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC-GGGGGGSCT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-hHHHHHHhh
Confidence            4566666666666653 2333443 4666666666644 3333  3333445666666666666655322 111222223


Q ss_pred             CCccCcEEEeecCC
Q 047084           94 SLTNLQKLCIIEAD  107 (437)
Q Consensus        94 ~l~~L~~L~l~~n~  107 (437)
                      .+++|+.|++++|.
T Consensus       182 ~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          182 TYTSLVSLNISCLA  195 (594)
T ss_dssp             TCCCCCEEECTTCC
T ss_pred             cCCcCcEEEecccC
Confidence            44555555555553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.47  E-value=1.6e-06  Score=84.74  Aligned_cols=53  Identities=11%  Similarity=0.166  Sum_probs=23.3

Q ss_pred             CCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchhhcCCcCCcEEece
Q 047084           22 NLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVY   75 (437)
Q Consensus        22 ~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~   75 (437)
                      +|+.+.+.. .+..++ .+|.++.+|+.+++.+|.+..+|...-...+|+.+.+.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence            455555443 333333 23444555555555544444444432223444444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=6.5e-08  Score=84.04  Aligned_cols=120  Identities=16%  Similarity=0.088  Sum_probs=85.2

Q ss_pred             ccCCCCCcEEEeecc-cCc-----ccChhhhcccCCCEEEccCCcccc-----cchhhcCCcCCcEEeceeecccccccc
Q 047084           17 VGNLFNLHYLSVKNT-KVK-----IIPKSIGNLLGLETLDLKNTLVRE-----LPVEIRNLKRLRYLMVYQYNYTAGFAA   85 (437)
Q Consensus        17 ~~~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~n~l~~~~~~   85 (437)
                      +...+.|+.|+|++| .|+     .+...+...++|++|+|++|.++.     +...+...++|++|+|++|.|+... .
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g-~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-I  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-H
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH-H
Confidence            456788999999999 885     244556677899999999887764     4445667788999999999987421 1


Q ss_pred             ccccccccCCccCcEEEe--ecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           86 AKLHEGFGSLTNLQKLCI--IEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        86 ~~lp~~~~~l~~L~~L~l--~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      ..+...+...++|++|++  ++|....-..           ..+...+...++|++|+|++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~-----------~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVE-----------MEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHH-----------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHH-----------HHHHHHHHhCCCcCEEeccCCCCC
Confidence            235566777788999999  7776322110           112234556678999999999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=1.1e-07  Score=82.60  Aligned_cols=109  Identities=11%  Similarity=0.108  Sum_probs=84.5

Q ss_pred             CEEEecCC-CCCc-----CCccccCCCCCcEEEeecccCcc-----cChhhhcccCCCEEEccCCcccc-----cchhhc
Q 047084            1 KVLDLEDA-PVDY-----LPEGVGNLFNLHYLSVKNTKVKI-----IPKSIGNLLGLETLDLKNTLVRE-----LPVEIR   64 (437)
Q Consensus         1 ~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~   64 (437)
                      ++|+|++| .++.     +...+...++|++|+|++|.|+.     +...+...++|++|+|++|.++.     +...+.
T Consensus        39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~  118 (185)
T 1io0_A           39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ  118 (185)
T ss_dssp             CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred             CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH
Confidence            57999999 8853     34456778899999999999952     44556677899999999888875     456688


Q ss_pred             CCcCCcEEec--eeeccccccccccccccccCCccCcEEEeecCChHh
Q 047084           65 NLKRLRYLMV--YQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA  110 (437)
Q Consensus        65 ~L~~L~~L~l--~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~  110 (437)
                      ..++|++|+|  ++|.++... ...+.+.+...++|++|++++|....
T Consensus       119 ~n~~L~~L~L~~~~N~i~~~g-~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          119 SNTSLIELRIDNQSQPLGNNV-EMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             GCSSCCEEECCCCSSCCCHHH-HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             hCCCceEEEecCCCCCCCHHH-HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            8899999999  889997431 12345556677899999999998543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.25  E-value=3.4e-06  Score=82.45  Aligned_cols=137  Identities=17%  Similarity=0.226  Sum_probs=85.5

Q ss_pred             EEecCCCCCcCCc-cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceee---
Q 047084            3 LDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQY---   77 (437)
Q Consensus         3 L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n---   77 (437)
                      +.+.. .+..++. .|.++.+|+.++++.|.+..+|...+...+|+.+.+.++ +..++.. |.++++|+.+++..|   
T Consensus       162 i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~  239 (401)
T 4fdw_A          162 IVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVST  239 (401)
T ss_dssp             EECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCE
T ss_pred             EEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccC
Confidence            44443 4556644 567777777777777777666655444566666666533 4445443 556666666655432   


Q ss_pred             ------------------cccccccccccc-ccccCCccCcEEEeecCC----------hHhHhhccchHhc--cccccc
Q 047084           78 ------------------NYTAGFAAAKLH-EGFGSLTNLQKLCIIEAD----------SEALKELMKLRQL--RNLLKT  126 (437)
Q Consensus        78 ------------------~l~~~~~~~~lp-~~~~~l~~L~~L~l~~n~----------~~~~~~L~~L~~l--~n~~~~  126 (437)
                                        .++      .++ ..|.++++|+.+.+.+|.          ...|.++..|+.+  .+.+..
T Consensus       240 I~~~aF~~~~L~~i~lp~~i~------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~  313 (401)
T 4fdw_A          240 IGQEAFRESGITTVKLPNGVT------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRI  313 (401)
T ss_dssp             ECTTTTTTCCCSEEEEETTCC------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCE
T ss_pred             ccccccccCCccEEEeCCCcc------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEE
Confidence                              222      333 458889999999998764          2345555555544  233556


Q ss_pred             CC-chhhcCCCCCeEEeeCCcCC
Q 047084          127 IP-PPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus       127 ip-~~~~~l~~L~~L~l~~N~l~  148 (437)
                      |+ .+|.++++|+.+.|..| ++
T Consensus       314 I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          314 LGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             ECTTTTTTCCSCCEEEECTT-CC
T ss_pred             EhhhhhcCCCCccEEEECcc-cc
Confidence            65 56788999999999665 54

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.22  E-value=2.4e-06  Score=82.15  Aligned_cols=16  Identities=0%  Similarity=-0.114  Sum_probs=11.5

Q ss_pred             CCCCCeEEeeCCcCCC
Q 047084          134 DRSTKKARFRSHEVDA  149 (437)
Q Consensus       134 l~~L~~L~l~~N~l~~  149 (437)
                      +++|++|+|+.|.|++
T Consensus       278 ~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          278 LPQLETMDISAGVLTD  293 (362)
T ss_dssp             GGGCSEEECCSSCCBH
T ss_pred             CCCCCEEECCCCCCCh
Confidence            5677777777777763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.21  E-value=2.9e-07  Score=84.29  Aligned_cols=86  Identities=16%  Similarity=0.160  Sum_probs=54.3

Q ss_pred             cCCCCCcE--EEeecccCcccChh----hhcccCCCEEEccCCcccccc---hhhcCCcCCcEEeceeeccccccccccc
Q 047084           18 GNLFNLHY--LSVKNTKVKIIPKS----IGNLLGLETLDLKNTLVRELP---VEIRNLKRLRYLMVYQYNYTAGFAAAKL   88 (437)
Q Consensus        18 ~~l~~L~~--L~L~~n~l~~lp~~----~~~l~~L~~L~l~~~~~~~lp---~~~~~L~~L~~L~l~~n~l~~~~~~~~l   88 (437)
                      ...+.|..  ++++.|....++..    ..++++|++|+|++|.+..++   ..+..+++|+.|+|++|++++..   .+
T Consensus       138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~---~l  214 (267)
T 3rw6_A          138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER---EL  214 (267)
T ss_dssp             GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG---GG
T ss_pred             CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch---hh
Confidence            33344444  56667754433322    245778888888877776654   45677888888888888887542   11


Q ss_pred             cccccCCccCcEEEeecCCh
Q 047084           89 HEGFGSLTNLQKLCIIEADS  108 (437)
Q Consensus        89 p~~~~~l~~L~~L~l~~n~~  108 (437)
                       ..+..+ +|++|+|++|..
T Consensus       215 -~~l~~l-~L~~L~L~~Npl  232 (267)
T 3rw6_A          215 -DKIKGL-KLEELWLDGNSL  232 (267)
T ss_dssp             -GGGTTS-CCSEEECTTSTT
T ss_pred             -hhcccC-CcceEEccCCcC
Confidence             223334 788888888874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.02  E-value=1.7e-06  Score=79.21  Aligned_cols=63  Identities=17%  Similarity=0.246  Sum_probs=38.6

Q ss_pred             cCCCCCcEEEeecccCcc---cChhhhcccCCCEEEccCCcccccchhhcCCc--CCcEEeceeecccc
Q 047084           18 GNLFNLHYLSVKNTKVKI---IPKSIGNLLGLETLDLKNTLVRELPVEIRNLK--RLRYLMVYQYNYTA   81 (437)
Q Consensus        18 ~~l~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~--~L~~L~l~~n~l~~   81 (437)
                      .++++|+.|+|++|+|..   +|..+..+++|++|+|++|.+..+. ++..+.  +|++|+|++|.+++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcc
Confidence            346667777777777643   3345566777777777766666552 233333  67777777777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.00  E-value=8.9e-06  Score=78.18  Aligned_cols=116  Identities=14%  Similarity=0.059  Sum_probs=60.1

Q ss_pred             ccCCCCCcEEEeecccCc----------ccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccc
Q 047084           17 VGNLFNLHYLSVKNTKVK----------IIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAA   86 (437)
Q Consensus        17 ~~~l~~L~~L~L~~n~l~----------~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~   86 (437)
                      +.++++|+.|.+..+...          .+...+..+++|+.|.++++.-..++. + .+++|+.|++..+.++...   
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~---  209 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSV---  209 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHH---
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHH---
Confidence            445667777766544221          233444556677777776442123333 3 2667777777666654211   


Q ss_pred             cccccc--cCCccCcEEEeecCC--hHhHhhccchHhcccccccCCchh--hcCCCCCeEEeeCCcCCC
Q 047084           87 KLHEGF--GSLTNLQKLCIIEAD--SEALKELMKLRQLRNLLKTIPPPL--AADRSTKKARFRSHEVDA  149 (437)
Q Consensus        87 ~lp~~~--~~l~~L~~L~l~~n~--~~~~~~L~~L~~l~n~~~~ip~~~--~~l~~L~~L~l~~N~l~~  149 (437)
                        ...+  ..+++|+.|+|+.+.  ...-..+..          +...+  ..+++|++|+|++|.+..
T Consensus       210 --l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~----------l~~~l~~~~~p~Lr~L~L~~~~i~~  266 (362)
T 2ra8_A          210 --VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV----------FRPLFSKDRFPNLKWLGIVDAEEQN  266 (362)
T ss_dssp             --HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG----------TGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred             --HHHHHHccCCCCcEEEEeccccccccchhHHH----------HHHHHhcCCCCCcCEEeCCCCCCch
Confidence              1122  256667777665321  100000111          11112  357899999999999873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.46  E-value=0.00011  Score=62.41  Aligned_cols=91  Identities=14%  Similarity=0.170  Sum_probs=55.3

Q ss_pred             cCCccccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCC-cccccc-hhhcCC----cCCcEEeceeec-ccccc
Q 047084           12 YLPEGVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNT-LVRELP-VEIRNL----KRLRYLMVYQYN-YTAGF   83 (437)
Q Consensus        12 ~lp~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~-~~~~lp-~~~~~L----~~L~~L~l~~n~-l~~~~   83 (437)
                      .+|.....-..|+.||++++.|+.. -..+.++++|++|+|+++ .++.-- ..+..+    ++|++|+|+++. ++...
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            3454332334688888888887422 145677888888888844 344321 124443    368888888864 65221


Q ss_pred             ccccccccccCCccCcEEEeecCC
Q 047084           84 AAAKLHEGFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        84 ~~~~lp~~~~~l~~L~~L~l~~n~  107 (437)
                           -..+..+++|++|+++++.
T Consensus       132 -----l~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          132 -----IIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             -----HHHGGGCTTCCEEEEESCT
T ss_pred             -----HHHHhcCCCCCEEECCCCC
Confidence                 1235667788888887764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.99  E-value=0.00048  Score=59.67  Aligned_cols=118  Identities=15%  Similarity=0.102  Sum_probs=69.5

Q ss_pred             CCCCCcEEEeecc-cCc-----ccChhhhcccCCCEEEccCCcccc-----cchhhcCCcCCcEEeceeecccccccccc
Q 047084           19 NLFNLHYLSVKNT-KVK-----IIPKSIGNLLGLETLDLKNTLVRE-----LPVEIRNLKRLRYLMVYQYNYTAGFAAAK   87 (437)
Q Consensus        19 ~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~n~l~~~~~~~~   87 (437)
                      +-+.|+.|+|++| .|+     .+-.++..-+.|+.|+|++|.++.     +-..+..-+.|+.|+|+.|.|.... ...
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-HHH
Confidence            3467888888875 664     234455566778888888777763     3334556677888888888887322 113


Q ss_pred             ccccccCCccCcEEEeecCC---hHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           88 LHEGFGSLTNLQKLCIIEAD---SEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        88 lp~~~~~l~~L~~L~l~~n~---~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      +-+.+..-+.|+.|+|++|.   ...-.           -..+...+..-++|++|+++.|.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g-----------~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQV-----------EMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHH-----------HHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHH-----------HHHHHHHHHhCCCcCeEeccCCCcc
Confidence            34455555668888876541   11100           0012233444467777887766554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.90  E-value=0.00082  Score=57.07  Aligned_cols=78  Identities=10%  Similarity=0.236  Sum_probs=56.9

Q ss_pred             CEEEecCCCCCcC-CccccCCCCCcEEEeeccc-Ccc-cChhhhcc----cCCCEEEccC-Ccccccc-hhhcCCcCCcE
Q 047084            1 KVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTK-VKI-IPKSIGNL----LGLETLDLKN-TLVRELP-VEIRNLKRLRY   71 (437)
Q Consensus         1 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~n~-l~~-lp~~~~~l----~~L~~L~l~~-~~~~~lp-~~~~~L~~L~~   71 (437)
                      +.||++++.|+.. -..+.++++|+.|+|++|. |+. --..+..+    ++|++|++++ ..++.-- ..+.++++|++
T Consensus        64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~  143 (176)
T 3e4g_A           64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY  143 (176)
T ss_dssp             EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred             eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence            3689999997543 2356889999999999996 642 11345554    4799999994 4465422 23778999999


Q ss_pred             Eeceeec
Q 047084           72 LMVYQYN   78 (437)
Q Consensus        72 L~l~~n~   78 (437)
                      |+++++.
T Consensus       144 L~L~~c~  150 (176)
T 3e4g_A          144 LFLSDLP  150 (176)
T ss_dssp             EEEESCT
T ss_pred             EECCCCC
Confidence            9999875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.80  E-value=0.0019  Score=51.98  Aligned_cols=54  Identities=15%  Similarity=0.211  Sum_probs=29.9

Q ss_pred             EEEeecccCc--ccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeeccc
Q 047084           25 YLSVKNTKVK--IIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus        25 ~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~   80 (437)
                      .++-+++.++  .+|..+.  .+|++|+|++|.++.+|.+ |..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4455555554  5553322  2455666666666666554 556666666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.70  E-value=0.0018  Score=52.22  Aligned_cols=52  Identities=17%  Similarity=0.130  Sum_probs=25.3

Q ss_pred             EEEccCCccc--ccchhhcCCcCCcEEeceeeccccccccccccc-cccCCccCcEEEeecCC
Q 047084           48 TLDLKNTLVR--ELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHE-GFGSLTNLQKLCIIEAD  107 (437)
Q Consensus        48 ~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~  107 (437)
                      .++.+++.++  .+|..+.  ++|++|+|++|+|+      .+|. .|..+.+|+.|+|++|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~------~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT------ALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS------SCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC------ccChhhhhhccccCEEEecCCC
Confidence            4444444444  5554322  24555555555555      2232 24555555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.62  E-value=0.0012  Score=57.08  Aligned_cols=108  Identities=15%  Similarity=0.117  Sum_probs=76.3

Q ss_pred             CEEEecCC-CCCc-----CCccccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCcccc-----cchhhc
Q 047084            1 KVLDLEDA-PVDY-----LPEGVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVRE-----LPVEIR   64 (437)
Q Consensus         1 ~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~   64 (437)
                      +.|+|++| .|+.     +-+.+..-+.|+.|+|++|.|+     .+-..+..-+.|++|+|++|.++.     +-+.+.
T Consensus        44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~  123 (197)
T 1pgv_A           44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL  123 (197)
T ss_dssp             CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred             cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence            46889885 6753     3334556688999999999996     344556667899999999998874     334466


Q ss_pred             CCcCCcEEeceeec---cccccccccccccccCCccCcEEEeecCChH
Q 047084           65 NLKRLRYLMVYQYN---YTAGFAAAKLHEGFGSLTNLQKLCIIEADSE  109 (437)
Q Consensus        65 ~L~~L~~L~l~~n~---l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~  109 (437)
                      .-+.|++|+|++|.   +.... ...+.+.+..-+.|+.|+++.|...
T Consensus       124 ~N~tL~~L~L~n~~~~~ig~~g-~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          124 VTQSIVEFKADNQRQSVLGNQV-EMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             TTCCCSEEECCCCSSCCCCHHH-HHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             hCCceeEEECCCCcCcCcCHHH-HHHHHHHHHhCCCcCeEeccCCCcc
Confidence            66789999998653   33110 1134455666678999999988743

>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A

Probab=96.60  E-value=0.00083  Score=38.48  Aligned_cols=22  Identities=36%  Similarity=0.955  Sum_probs=19.1

Q ss_pred             cccccccccccccCCCCCCccc
Q 047084          374 PIICYQCGKYGHNSIVCQSKQK  395 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~~~~  395 (437)
                      ...||.||+.||..++|+.+..
T Consensus         6 ~~~C~nCgk~GH~ar~C~~prk   27 (29)
T 1nc8_A            6 VIRCWNCGKEGHSARQCRAPRR   27 (29)
T ss_dssp             CCBCTTTSCBSSCGGGCCSSSS
T ss_pred             CCEEEECCccccCHhHCccccc
Confidence            4679999999999999998754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.35  E-value=0.014  Score=56.32  Aligned_cols=105  Identities=14%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             ccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecccccccccccc-cccc
Q 047084           17 VGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLH-EGFG   93 (437)
Q Consensus        17 ~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~~lp-~~~~   93 (437)
                      |.++..|+.+.+..+.. .+. .++.++.+|+.+.+. +.+..++.. |.++++|+.+.+..+ ++      .+. ..|.
T Consensus       261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~------~I~~~aF~  331 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT------QILDDAFA  331 (394)
T ss_dssp             TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC------EECTTTTT
T ss_pred             eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc------EehHhHhh
Confidence            34445555555544322 222 334455555555553 223344443 555555555555432 22      222 2345


Q ss_pred             CCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcC
Q 047084           94 SLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEV  147 (437)
Q Consensus        94 ~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l  147 (437)
                      ++++|+.+.+..                 -+..|. .+|.++++|+.+++.+|..
T Consensus       332 ~C~~L~~i~ip~-----------------sv~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          332 GCEQLERIAIPS-----------------SVTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TCTTCCEEEECT-----------------TCCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CCCCCCEEEECc-----------------ccCEEhHhHhhCCCCCCEEEECCcee
Confidence            555555554432                 134454 4677888888888876643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.28  E-value=0.013  Score=56.65  Aligned_cols=106  Identities=13%  Similarity=0.247  Sum_probs=70.5

Q ss_pred             cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecccccccccccc-ccc
Q 047084           16 GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLH-EGF   92 (437)
Q Consensus        16 ~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~~lp-~~~   92 (437)
                      .|.++..|+.+.+. +.+..++ .+|.++.+|+.+.+..+ +..+.+. |.++++|+.+.+..+ ++      .+. ..|
T Consensus       283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~------~I~~~aF  353 (394)
T 4gt6_A          283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT------KIPESAF  353 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC------BCCGGGG
T ss_pred             ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC------EEhHhHh
Confidence            46788999999996 4577777 45778999999999855 6667664 999999999999654 55      344 458


Q ss_pred             cCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           93 GSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        93 ~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      .++++|+.+++.++....                  ..+....+|+.+.+..|.+.
T Consensus       354 ~~C~~L~~i~~~~~~~~~------------------~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          354 SNCTALNNIEYSGSRSQW------------------NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             TTCTTCCEEEESSCHHHH------------------HTCBCCCCC-----------
T ss_pred             hCCCCCCEEEECCceeeh------------------hhhhccCCCCEEEeCCCCEE
Confidence            999999999998753110                  13445566777776666543

>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1

Probab=96.26  E-value=0.0019  Score=39.87  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             cccccccccccccCCCCCCcccc
Q 047084          374 PIICYQCGKYGHNSIVCQSKQKM  396 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~~~~~  396 (437)
                      ...||.||+.||....||.+...
T Consensus        10 ~~~C~~Cgk~GH~ardCP~~~~~   32 (40)
T 1a6b_B           10 RDQCAYCKEKGHWAKDCPKKPRG   32 (40)
T ss_dssp             SSSCSSSCCTTCCTTSCSSSCCC
T ss_pred             CCeeeECCCCCcchhhCcCCccc
Confidence            36799999999999999997654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.06  E-value=0.0085  Score=57.93  Aligned_cols=103  Identities=16%  Similarity=0.109  Sum_probs=63.9

Q ss_pred             cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecccccccccccc-cccc
Q 047084           16 GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLH-EGFG   93 (437)
Q Consensus        16 ~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~~lp-~~~~   93 (437)
                      .+..+..|+.+....+.+.  ...+..+.+|+.+.+.++ +..+++. |.++++|+.+++..+ ++      .++ ..|.
T Consensus       271 ~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~------~I~~~aF~  340 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE------EIGKRSFR  340 (394)
T ss_dssp             TTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC------EECTTTTT
T ss_pred             ccccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc------EEhHHhcc
Confidence            4566777777777655432  134667788888887654 5556554 778888888887543 44      333 4477


Q ss_pred             CCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCC
Q 047084           94 SLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSH  145 (437)
Q Consensus        94 ~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N  145 (437)
                      ++++|+.+.+..+                 +..|+ .+|.++++|+.+++..+
T Consensus       341 ~c~~L~~i~lp~~-----------------l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          341 GCTSLSNINFPLS-----------------LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEECCCTT-----------------CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCCCCEEEECcc-----------------ccEehHHHhhCCCCCCEEEECCC
Confidence            7888888776542                 22222 34556666666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.86  E-value=0.027  Score=53.87  Aligned_cols=119  Identities=15%  Similarity=0.203  Sum_probs=55.5

Q ss_pred             ccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeeccccccccccccc-ccc
Q 047084           17 VGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAKLHE-GFG   93 (437)
Q Consensus        17 ~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~lp~-~~~   93 (437)
                      +.....|+.+.+..+ +..++ .++.++..|+.+.+..+ +..++. .|.++.+|+.+.+..+ ++      .++. .|.
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~------~i~~~aF~  283 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK------TVPYLLCS  283 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS------EECTTTTT
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce------eccccccc
Confidence            344555666665443 33333 34555666666666543 344433 2555666666665432 22      2232 355


Q ss_pred             CCccCcEEEeecCC-----hHhHhhccchHhc--ccccccCC-chhhcCCCCCeEEeeC
Q 047084           94 SLTNLQKLCIIEAD-----SEALKELMKLRQL--RNLLKTIP-PPLAADRSTKKARFRS  144 (437)
Q Consensus        94 ~l~~L~~L~l~~n~-----~~~~~~L~~L~~l--~n~~~~ip-~~~~~l~~L~~L~l~~  144 (437)
                      ++++|+.+.+.++.     ...|.++..|+.+  .+.+..|. .+|.++++|+.+.+..
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECC
Confidence            66666666655432     1122222222222  11133333 3455666666665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.69  E-value=0.032  Score=53.78  Aligned_cols=111  Identities=17%  Similarity=0.152  Sum_probs=77.9

Q ss_pred             CCcCCc-cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeecccccccccc
Q 047084           10 VDYLPE-GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYNYTAGFAAAK   87 (437)
Q Consensus        10 l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~l~~~~~~~~   87 (437)
                      +..+.. .+.++..|+.+.+..+....-...+.++..++.+....+.   ++. .|..+.+|+.+.+..+ ++      .
T Consensus       241 ~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~------~  310 (394)
T 4fs7_A          241 FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VK------F  310 (394)
T ss_dssp             CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CC------E
T ss_pred             ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cc------e
Confidence            334433 4677889999999887544334567788899988877543   444 3788899999988654 44      3


Q ss_pred             cc-ccccCCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCC
Q 047084           88 LH-EGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        88 lp-~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~  148 (437)
                      ++ ..|.++++|+.+.+..+                 +..|+ .+|.++++|+.+.+..| ++
T Consensus       311 I~~~aF~~c~~L~~i~lp~~-----------------v~~I~~~aF~~c~~L~~i~lp~~-l~  355 (394)
T 4fs7_A          311 IGEEAFESCTSLVSIDLPYL-----------------VEEIGKRSFRGCTSLSNINFPLS-LR  355 (394)
T ss_dssp             ECTTTTTTCTTCCEECCCTT-----------------CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred             echhhhcCCCCCCEEEeCCc-----------------ccEEhHHhccCCCCCCEEEECcc-cc
Confidence            44 45888999999977542                 33443 56788899999999877 65

>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A

Probab=95.57  E-value=0.0047  Score=41.20  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             cccccccccccccCCCCCCcccc
Q 047084          374 PIICYQCGKYGHNSIVCQSKQKM  396 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~~~~~  396 (437)
                      ...|+.||..||....||.+...
T Consensus        23 ~~~C~~Cge~GH~ardCp~~~~~   45 (56)
T 1u6p_A           23 RDQCAYCKEKGHWAKDCPKKPRG   45 (56)
T ss_dssp             TTBCSSSCCBSSCGGGCTTCCCS
T ss_pred             CCcceeCCCCCcccccCcCCccc
Confidence            36799999999999999997654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.16  E-value=0.037  Score=52.91  Aligned_cols=102  Identities=19%  Similarity=0.176  Sum_probs=71.8

Q ss_pred             CCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeeccccccccc
Q 047084           10 VDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAA   86 (437)
Q Consensus        10 l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~   86 (437)
                      +..++. .+.++..|+.+.+..+ +..++ .++.++.+|+.+.+..+ +..++.. |.++++|+.+.+..+.++      
T Consensus       228 ~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~------  299 (379)
T 4h09_A          228 VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE------  299 (379)
T ss_dssp             CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC------
T ss_pred             eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc------
Confidence            444433 4677889999999776 65665 45677889999988654 5566654 888999999999877776      


Q ss_pred             ccc-ccccCCccCcEEEeecCC----hHhHhhccchHh
Q 047084           87 KLH-EGFGSLTNLQKLCIIEAD----SEALKELMKLRQ  119 (437)
Q Consensus        87 ~lp-~~~~~l~~L~~L~l~~n~----~~~~~~L~~L~~  119 (437)
                      .++ ..|.++.+|+.+.+..+-    ..+|.++..|+.
T Consensus       300 ~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          300 TLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALST  337 (379)
T ss_dssp             EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCC
T ss_pred             eehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCE
Confidence            344 458889999999987542    344555555443

>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}

Probab=95.14  E-value=0.0065  Score=32.75  Aligned_cols=21  Identities=24%  Similarity=0.624  Sum_probs=18.0

Q ss_pred             cccccccccccccCCCCCCcc
Q 047084          374 PIICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~~~  394 (437)
                      .++|..|..+||...+|...+
T Consensus         3 RpYCe~CE~FGH~t~~C~d~e   23 (26)
T 2hqh_E            3 RPYCEICEMFGHWATNCNDDE   23 (26)
T ss_dssp             -CEETTTTEESSCGGGCCTTC
T ss_pred             CccchHHHHhCcccccCCccc
Confidence            479999999999999997654

>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.00  E-value=0.0088  Score=39.72  Aligned_cols=22  Identities=32%  Similarity=0.785  Sum_probs=18.5

Q ss_pred             ccccccccccccCCCCCCcccc
Q 047084          375 IICYQCGKYGHNSIVCQSKQKM  396 (437)
Q Consensus       375 ~~C~~cg~~gH~~~~C~~~~~~  396 (437)
                      ..|+.||..||..++||.....
T Consensus         8 ~~C~kCGk~GH~~k~Cp~~~~~   29 (55)
T 2ysa_A            8 YTCFRCGKPGHYIKNCPTNGDK   29 (55)
T ss_dssp             CCCTTTCCTTSCGGGCSGGGCS
T ss_pred             CccccCCCcCcccccCCCCCCC
Confidence            5799999999999999965433

>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}

Probab=93.51  E-value=0.042  Score=40.01  Aligned_cols=23  Identities=39%  Similarity=0.842  Sum_probs=20.2

Q ss_pred             cccccccccccccCCCCCCcccc
Q 047084          374 PIICYQCGKYGHNSIVCQSKQKM  396 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~~~~~  396 (437)
                      ..+|+.||.-||..++|+.+...
T Consensus        46 ~~~CYnCG~~GH~~rdC~~~r~s   68 (83)
T 3nyb_B           46 TIYCYNCGGKGHFGDDCKEKRSS   68 (83)
T ss_dssp             CCBCSSSSCBSSCGGGCSSCCSC
T ss_pred             CCeecccCCCCcCcccCCccccC
Confidence            47999999999999999997644

>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1

Probab=93.28  E-value=0.036  Score=35.93  Aligned_cols=22  Identities=36%  Similarity=0.883  Sum_probs=18.5

Q ss_pred             CcccccccccccccCCCCCCcc
Q 047084          373 LPIICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       373 lp~~C~~cg~~gH~~~~C~~~~  394 (437)
                      -+..||.||..||....|+.+.
T Consensus         5 r~~~C~~Cg~~GH~a~~C~~~~   26 (49)
T 2ec7_A            5 KVIRCWNCGKEGHSARQCRAPR   26 (49)
T ss_dssp             CCCBCTTTCCBTCCTTTCCCSS
T ss_pred             CcCeeeecCCCCcChhhCcCCC
Confidence            3578999999999999998863

>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}

Probab=92.78  E-value=0.047  Score=32.98  Aligned_cols=18  Identities=50%  Similarity=1.102  Sum_probs=14.7

Q ss_pred             cccccccccccCCCCCCc
Q 047084          376 ICYQCGKYGHNSIVCQSK  393 (437)
Q Consensus       376 ~C~~cg~~gH~~~~C~~~  393 (437)
                      .||.||..||..+.|+.+
T Consensus         2 ~C~~Cg~~GH~~~~C~~~   19 (37)
T 2bl6_A            2 TCYNCGKPGHLSSQCRAP   19 (37)
T ss_dssp             CBSSSCCSSCCTTTSSCB
T ss_pred             cccccCCCCcchhhCcCc
Confidence            588888888888888764

>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}

Probab=92.67  E-value=0.05  Score=33.31  Aligned_cols=18  Identities=39%  Similarity=1.126  Sum_probs=16.5

Q ss_pred             cccccccccccCCCCCCc
Q 047084          376 ICYQCGKYGHNSIVCQSK  393 (437)
Q Consensus       376 ~C~~cg~~gH~~~~C~~~  393 (437)
                      .||.||..||....|+.+
T Consensus         2 ~C~~Cg~~GH~a~~C~~~   19 (39)
T 2a51_A            2 TCFNCGKPGHTARMCRQP   19 (39)
T ss_dssp             BCTTTCCBSSCTTTCCSC
T ss_pred             eeeccCCCCcccccCCCC
Confidence            599999999999999975

>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}

Probab=92.27  E-value=0.053  Score=36.98  Aligned_cols=21  Identities=38%  Similarity=0.904  Sum_probs=14.9

Q ss_pred             cccccccccccccCCCCCCcc
Q 047084          374 PIICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~~~  394 (437)
                      +..||.||..||....|+.+.
T Consensus         4 ~~~C~~Cg~~GH~a~~C~~~~   24 (61)
T 2ihx_A            4 RGLCYTCGSPGHYQAQCPKKR   24 (61)
T ss_dssp             TTBCSSSCCBTCCGGGCTTTT
T ss_pred             CCcccccCCCCeehhhCcCCc
Confidence            566777777777777777653

>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}

Probab=92.18  E-value=0.052  Score=37.02  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=19.0

Q ss_pred             cccccccccccccCCCCCCcccc
Q 047084          374 PIICYQCGKYGHNSIVCQSKQKM  396 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~~~~~  396 (437)
                      ...|+.||..||..+.|+.++..
T Consensus        30 ~~~C~~Cg~~GH~ar~C~~~~~~   52 (61)
T 2ihx_A           30 RERCQLCNGMGHNAKQCRKRDGN   52 (61)
T ss_dssp             CSBCTTTCCBSSCGGGCCCCC--
T ss_pred             CCeeCCCCCCCCCcCCCcCCCcC
Confidence            46799999999999999987653

>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1

Probab=92.06  E-value=0.056  Score=35.00  Aligned_cols=20  Identities=40%  Similarity=0.891  Sum_probs=18.0

Q ss_pred             ccccccccccccCCCCCCcc
Q 047084          375 IICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       375 ~~C~~cg~~gH~~~~C~~~~  394 (437)
                      ..|+.||..||..+.|+.++
T Consensus        28 ~~C~~Cg~~GH~~~~C~~~~   47 (49)
T 2ec7_A           28 QGCWKCGKTGHVMAKCPERQ   47 (49)
T ss_dssp             CSCSSSCCSSCCGGGCCSSC
T ss_pred             CeeCcCCCcCCccCCCcCCC
Confidence            57999999999999999764

>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}

Probab=91.77  E-value=0.054  Score=32.70  Aligned_cols=19  Identities=42%  Similarity=1.030  Sum_probs=16.9

Q ss_pred             cccccccccccccCCCCCC
Q 047084          374 PIICYQCGKYGHNSIVCQS  392 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~  392 (437)
                      +..|+.||..||..+.||.
T Consensus        19 ~~~C~~Cg~~GH~a~~C~~   37 (37)
T 2bl6_A           19 PKVCFKCKQPGHFSKQCRS   37 (37)
T ss_dssp             BTTCSSCCCTTGGGGTTCC
T ss_pred             cCeEccCCCcCCccCcCcC
Confidence            4689999999999999973

>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A

Probab=91.71  E-value=0.063  Score=35.72  Aligned_cols=21  Identities=33%  Similarity=0.872  Sum_probs=18.1

Q ss_pred             CcccccccccccccCCCCCCc
Q 047084          373 LPIICYQCGKYGHNSIVCQSK  393 (437)
Q Consensus       373 lp~~C~~cg~~gH~~~~C~~~  393 (437)
                      -+..||.||..||....|+.+
T Consensus        11 ~~~~C~~Cg~~GH~a~~C~~~   31 (55)
T 1a1t_A           11 KTVKCFNCGKEGHIAKNCRAP   31 (55)
T ss_dssp             GTCBCTTTCCBSSCGGGCSSC
T ss_pred             CCcceeeeCCCCcChhhcCCC
Confidence            357899999999999999876

>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}

Probab=91.57  E-value=0.075  Score=32.51  Aligned_cols=19  Identities=26%  Similarity=0.646  Sum_probs=17.0

Q ss_pred             cccccccccccccCCCCCC
Q 047084          374 PIICYQCGKYGHNSIVCQS  392 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~  392 (437)
                      ...|+.||..||..+.||.
T Consensus        21 ~~~C~~Cg~~GH~~~~C~~   39 (39)
T 2a51_A           21 QEGCWNCGSKEHRFAQCPK   39 (39)
T ss_dssp             CSSCTTTCCSSSCTTTSCC
T ss_pred             CCccccCCCCCCccCcCcC
Confidence            3689999999999999984

>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.86  E-value=0.12  Score=35.39  Aligned_cols=19  Identities=26%  Similarity=0.461  Sum_probs=10.0

Q ss_pred             ccccccccccccCCCCCCc
Q 047084          375 IICYQCGKYGHNSIVCQSK  393 (437)
Q Consensus       375 ~~C~~cg~~gH~~~~C~~~  393 (437)
                      ..|+.||..||..+.|+..
T Consensus        30 ~~C~~Cg~~GH~ar~Cp~~   48 (63)
T 2cqf_A           30 KKCHFCQSISHMVASCPLK   48 (63)
T ss_dssp             SCCTTTCCSSSCTTTCTGG
T ss_pred             CccCCcCCcCCccCcCCCc
Confidence            4455555555555555543

>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.33  E-value=0.11  Score=35.56  Aligned_cols=21  Identities=29%  Similarity=0.664  Sum_probs=18.6

Q ss_pred             CcccccccccccccCCCCCCc
Q 047084          373 LPIICYQCGKYGHNSIVCQSK  393 (437)
Q Consensus       373 lp~~C~~cg~~gH~~~~C~~~  393 (437)
                      .+..||.||..||..+.|+.+
T Consensus         6 r~~~C~~Cg~~GH~a~~C~~~   26 (63)
T 2cqf_A            6 SGDRCYNCGGLDHHAKECKLP   26 (63)
T ss_dssp             SCCCCSSSCCSSSCTTTCCSC
T ss_pred             CCCcccccCCCCcChhhCCCC
Confidence            357899999999999999974

>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A

Probab=90.13  E-value=0.15  Score=34.53  Aligned_cols=22  Identities=32%  Similarity=0.649  Sum_probs=18.9

Q ss_pred             CcccccccccccccCCCCCCcc
Q 047084          373 LPIICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       373 lp~~C~~cg~~gH~~~~C~~~~  394 (437)
                      -...|+.||..||..+.|+.+.
T Consensus        29 ~~~~C~~Cg~~GH~ar~C~~~~   50 (60)
T 1cl4_A           29 VPGLCPRCKRGKHWANECKSKT   50 (60)
T ss_dssp             CCCSCSSCSSCSSCSTTCCCTT
T ss_pred             CCcceeECCCCCCccCcCCCcc
Confidence            3578999999999999999875

>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A

Probab=89.93  E-value=0.11  Score=34.49  Aligned_cols=20  Identities=40%  Similarity=0.884  Sum_probs=18.0

Q ss_pred             ccccccccccccCCCCCCcc
Q 047084          375 IICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       375 ~~C~~cg~~gH~~~~C~~~~  394 (437)
                      ..|+.||..||..+.|+.++
T Consensus        34 ~~C~~Cg~~GH~~~~C~~~~   53 (55)
T 1a1t_A           34 KGCWKCGKEGHQMKDCTERQ   53 (55)
T ss_dssp             CBCTTTCCBSSCGGGCSSSC
T ss_pred             CEeCCCCCcCCccCCCcCcC
Confidence            57999999999999999754

>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}

Probab=89.21  E-value=0.18  Score=35.71  Aligned_cols=20  Identities=30%  Similarity=0.707  Sum_probs=14.6

Q ss_pred             CcccccccccccccCCCCCC
Q 047084          373 LPIICYQCGKYGHNSIVCQS  392 (437)
Q Consensus       373 lp~~C~~cg~~gH~~~~C~~  392 (437)
                      .+..||.||..||..+.|+.
T Consensus        23 r~~~C~~Cg~~GH~a~~C~~   42 (74)
T 2li8_A           23 KGDRCYNCGGLDHHAKECKL   42 (74)
T ss_dssp             TTSCCTTTCCSSSCTTTCSS
T ss_pred             CCCcccccCCcCcCcccCCC
Confidence            34667778877887777775

>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}

Probab=89.01  E-value=0.14  Score=36.26  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=18.0

Q ss_pred             ccccccccccccCCCCCCcc
Q 047084          375 IICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       375 ~~C~~cg~~gH~~~~C~~~~  394 (437)
                      ..|+.||..||..+.|+...
T Consensus        47 ~~C~~Cg~~GH~ar~Cp~~~   66 (74)
T 2li8_A           47 KKCHFCQSISHMVASCPLKA   66 (74)
T ss_dssp             CCCTTTCCTTSCGGGCTTGG
T ss_pred             CccCCcCCcCCccCcCcCCc
Confidence            47999999999999999865

>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A

Probab=87.74  E-value=0.1  Score=35.36  Aligned_cols=20  Identities=35%  Similarity=0.843  Sum_probs=0.0

Q ss_pred             ccccccccccccCCCCCCcc
Q 047084          375 IICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       375 ~~C~~cg~~gH~~~~C~~~~  394 (437)
                      ..||.||..||..+.|+...
T Consensus         2 ~~Cf~Cg~~GH~a~~C~~~~   21 (60)
T 1cl4_A            2 GSCFKCGKKGHFAKNCHEHA   21 (60)
T ss_dssp             --------------------
T ss_pred             CccccCCCCCcCHhhCcCCC
Confidence            36999999999999999864

>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}

Probab=86.75  E-value=0.17  Score=36.76  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=17.6

Q ss_pred             cCcccccccccccccCCCCCCcc
Q 047084          372 GLPIICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       372 ~lp~~C~~cg~~gH~~~~C~~~~  394 (437)
                      |-..+|+.||..||..+.||...
T Consensus         3 ~k~~~C~~Cg~~GH~~~~Cp~~~   25 (83)
T 3nyb_B            3 WKKVQCTLCKSKKHSKERCPSIW   25 (83)
T ss_dssp             ----CCSSSCCSSSCGGGCGGGT
T ss_pred             cccCCCCCCCCCCCccccCCCcc
Confidence            34678999999999999999854

>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*

Probab=86.69  E-value=0.22  Score=40.67  Aligned_cols=20  Identities=30%  Similarity=0.755  Sum_probs=16.7

Q ss_pred             ccccccccccccCCCCCCcc
Q 047084          375 IICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       375 ~~C~~cg~~gH~~~~C~~~~  394 (437)
                      ..|+.||..||..+.|+.+.
T Consensus        98 ~~C~~Cg~~GH~a~~C~~~~  117 (148)
T 3ts2_A           98 DRCYNCGGLDHHAKECKLPP  117 (148)
T ss_dssp             CCCTTTCCSSCCGGGCCSCC
T ss_pred             CcccEeCCccchhhhCCCCC
Confidence            46999999999999998743

>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}

Probab=82.84  E-value=0.44  Score=28.99  Aligned_cols=21  Identities=24%  Similarity=0.624  Sum_probs=18.9

Q ss_pred             cccccccccccccCCCCCCcc
Q 047084          374 PIICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~~~  394 (437)
                      .++|..|-.+||...+|...+
T Consensus        20 RpYCe~CEVFGH~t~eC~dde   40 (42)
T 3e2u_E           20 RPYCEICEMFGHWATNCNDDE   40 (42)
T ss_dssp             CCEETTTTEESSCGGGCCTTC
T ss_pred             CcccccceecccccccCCccc
Confidence            689999999999999998754

>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*

Probab=81.49  E-value=0.51  Score=38.46  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             cccccccccccccCCCCCCcccc
Q 047084          374 PIICYQCGKYGHNSIVCQSKQKM  396 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~~~~~  396 (437)
                      +..|+.||..||..+.||.....
T Consensus       119 ~~~C~~Cg~~GH~~r~Cp~~~~~  141 (148)
T 3ts2_A          119 PKKCHFCQSINHMVASCPLKAQQ  141 (148)
T ss_dssp             CCCCTTTCCSSCCGGGCTTTTC-
T ss_pred             CCcccccCCcCCEeccCcCCCCC
Confidence            78999999999999999986544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	437
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
             L L    +  +   V +L  L  L   N KV  +  S+ NL  +  L   +  + +L 
Sbjct: 310 TYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLT 367

Query: 61  VEIRNLKRLRYL 72
             + NL R+  L
Sbjct: 368 -PLANLTRITQL 378

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 1   KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELP 60
           + L++ +  +  LP     L     L      +  +P+   NL   + L ++   +RE P
Sbjct: 287 EELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQNL---KQLHVEYNPLREFP 340

Query: 61  VEIRNLKRLR 70
               +++ LR
Sbjct: 341 DIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 19  NLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYN 78
              +L  L+V N K+  +P        LE L      + E+P   +NLK+L ++   +YN
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPELPQNLKQL-HV---EYN 334

Query: 79  YTAGFAAAKLHEGFGSLTNLQ 99
                   +  +   S+ +L+
Sbjct: 335 PL-----REFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 22 NLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLM 73
            H L + N  +  +P+   +L   E+L      + ELP   ++LK L    
Sbjct: 39 QAHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDN 87

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 1   KVLDLEDAPVDYLPEGV-GNLFNLHYLSVKNTKV-KIIPKSIGNLLGLETLDLKNTLVRE 58
            +LDL++  +  + +G   NL NLH L + N K+ KI P +   L+ LE L L    ++E
Sbjct: 34  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

Query: 59  LPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLR 118
           LP ++    +   +   +           L++          L     ++ A + + KL 
Sbjct: 94  LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153

Query: 119 QLR---NLLKTIPPPL 131
            +R     + TIP  L
Sbjct: 154 YIRIADTNITTIPQGL 169

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 35  IIPKSIGNLLGLETLDL-KNTLVRELPVEIRNLKRLRYLMVYQYN 78
            +P+ +  L  L +L++  N L  E+P +  NL+R      Y  N
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA-YANN 301

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 7/54 (12%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 26 LSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY 79
          L      ++ +  ++  L   + L L    + ++   +  ++ LR L + +   
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	437
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.4
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.39
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.38
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.69
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.16
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.06
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.05
d1dsqa_	26	Nucleic acid binding protein p14 {Mouse mammary tu	97.49
d1nc8a_	29	HIV nucleocapsid {Human immunodeficiency virus typ	97.49
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.26
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.44
d2exfa1	42	HIV nucleocapsid {Human immunodeficiency virus typ	95.5
d2exfa1	42	HIV nucleocapsid {Human immunodeficiency virus typ	94.48
d1a6bb_	40	Zinc finger protein ncp10 {Moloney murine leukemia	90.64

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.76  E-value=1.6e-19  Score=169.64  Aligned_cols=219  Identities=16%  Similarity=0.166  Sum_probs=120.1

Q ss_pred             EEEecCCCCC---cCCccccCCCCCcEEEeec-ccC-cccChhhhcccCCCEEEccCCccccc-chhhcCCcCCcEEece
Q 047084            2 VLDLEDAPVD---YLPEGVGNLFNLHYLSVKN-TKV-KIIPKSIGNLLGLETLDLKNTLVREL-PVEIRNLKRLRYLMVY   75 (437)
Q Consensus         2 ~L~L~~n~l~---~lp~~~~~l~~L~~L~L~~-n~l-~~lp~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~   75 (437)
                      .|||++|.+.   .+|+++++|++|++|+|++ |.+ +.+|++|++|++|++|++++|.+..+ |..+..+++|++++++
T Consensus        54 ~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~  133 (313)
T d1ogqa_          54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred             EEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccc
Confidence            3555555553   3555555666666666654 444 35555566666666666654444333 3335555556666666


Q ss_pred             eeccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCC-CeEEeeCCcCCCCCCCC
Q 047084           76 QYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRST-KKARFRSHEVDADSPSP  154 (437)
Q Consensus        76 ~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L-~~L~l~~N~l~~~~p~~  154 (437)
                      .|.+.+.     +|..++.+++|+.+++++|.               ..+.+|..+..+.++ +.+++++|++++..|..
T Consensus       134 ~N~~~~~-----~p~~l~~l~~L~~l~l~~n~---------------l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         134 YNALSGT-----LPPSISSLPNLVGITFDGNR---------------ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             SSEEESC-----CCGGGGGCTTCCEEECCSSC---------------CEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             ccccccc-----CchhhccCcccceeeccccc---------------ccccccccccccccccccccccccccccccccc
Confidence            5555532     25555555556666555543               234566666666554 66777777777665554


Q ss_pred             chhh---hhhcCCCCC--CC---CchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCH
Q 047084          155 LSFK---DALVHPEQY--RS---SEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGY  226 (437)
Q Consensus       155 ~~~~---~~~l~~n~l--~~---~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~  226 (437)
                      +...   .+.++.+..  ..   ......++.+++++|.++    ..++.+..                ..++..++++.
T Consensus       194 ~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~----~~~~~~~~----------------~~~L~~L~Ls~  253 (313)
T d1ogqa_         194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----FDLGKVGL----------------SKNLNGLDLRN  253 (313)
T ss_dssp             GGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC----CBGGGCCC----------------CTTCCEEECCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc----cccccccc----------------ccccccccCcc
Confidence            4221   122222222  11   112223455666666665    21221100                11233345677


Q ss_pred             HHHHHHHHhcccCCCceEEEEcCCcEEEEEeCCh
Q 047084          227 KVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSP  260 (437)
Q Consensus       227 n~l~~~l~~~w~~~~~l~~l~l~~N~f~~~f~~~  260 (437)
                      |++++.+|..+..++.++.+++++|.+....+..
T Consensus       254 N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             CeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            7777677777888889999999999998776653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-18  Score=156.90  Aligned_cols=157  Identities=18%  Similarity=0.179  Sum_probs=120.6

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ..|.+++.++++|+.+.  ++|++|+|++|+|..+| ..|.++++|++|+|++|.++.+|. ++.+++|++|++++|+++
T Consensus        14 ~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~   90 (266)
T d1p9ag_          14 EVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQ   90 (266)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCS
T ss_pred             EEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccccc
Confidence            45788899999998775  57999999999998887 568899999999999999998885 578999999999999998


Q ss_pred             cccccccccccccCCccCcEEEeecCChH--------hHhhccchHhcccccccCCc-hhhcCCCCCeEEeeCCcCCCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSE--------ALKELMKLRQLRNLLKTIPP-PLAADRSTKKARFRSHEVDADS  151 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~--------~~~~L~~L~~l~n~~~~ip~-~~~~l~~L~~L~l~~N~l~~~~  151 (437)
                            ..+..+..+++|+.|++++|...        .+.++..|...+|.+..+|. .+..+++|+.|++++|+|++..
T Consensus        91 ------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          91 ------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             ------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ------ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence                  44777899999999999998622        22344444444677777764 4457788888888888888544


Q ss_pred             CCCc----hhhhhhcCCCCC
Q 047084          152 PSPL----SFKDALVHPEQY  167 (437)
Q Consensus       152 p~~~----~~~~~~l~~n~l  167 (437)
                      +..+    ++..+.+++|++
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccccceeecccCCC
Confidence            4433    334455555555

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=4.4e-18  Score=159.67  Aligned_cols=182  Identities=18%  Similarity=0.256  Sum_probs=136.5

Q ss_pred             CEEEecC-CCC-CcCCccccCCCCCcEEEeecccCc-ccChhhhcccCCCEEEcc-CCcccccchhhcCCcCCcEEecee
Q 047084            1 KVLDLED-APV-DYLPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLK-NTLVRELPVEIRNLKRLRYLMVYQ   76 (437)
Q Consensus         1 ~~L~L~~-n~l-~~lp~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~-~~~~~~lp~~~~~L~~L~~L~l~~   76 (437)
                      ++|+|++ |.+ +.+|++|++|++|++|+|++|++. ..+..+..+.+|++++++ ++....+|..++++++|+++++++
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~  158 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccc
Confidence            6899987 777 589999999999999999999996 455678899999999999 455667899999999999999999


Q ss_pred             eccccccccccccccccCCccC-cEEEeecCC-----hHhHhhccchHh--c-ccccccCCchhhcCCCCCeEEeeCCcC
Q 047084           77 YNYTAGFAAAKLHEGFGSLTNL-QKLCIIEAD-----SEALKELMKLRQ--L-RNLLKTIPPPLAADRSTKKARFRSHEV  147 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~~L-~~L~l~~n~-----~~~~~~L~~L~~--l-~n~~~~ip~~~~~l~~L~~L~l~~N~l  147 (437)
                      |.++|.     +|..+..+.++ +.++++.|+     +..+..+..+..  . ++..+.+|..+..+++|+.+++++|.+
T Consensus       159 n~l~~~-----ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         159 NRISGA-----IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             SCCEEE-----CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             cccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999874     48888888775 888888886     334444433221  1 233456677777778888888888888


Q ss_pred             CCCCCCC---chhhhhhcCCCCC--CC---CchhccceeeecCCCCcc
Q 047084          148 DADSPSP---LSFKDALVHPEQY--RS---SEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       148 ~~~~p~~---~~~~~~~l~~n~l--~~---~~~~~~~~~L~L~~n~l~  187 (437)
                      ++.+|..   ..+..+.++.|++  ..   +.....++.|+|++|+|+
T Consensus       234 ~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            7655432   2455667777777  11   223445677888888887

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.9e-17  Score=151.53  Aligned_cols=165  Identities=19%  Similarity=0.141  Sum_probs=133.5

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecc
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l   79 (437)
                      ++|+|++|+|+.+|. .|.++++|++|+|++|+|+.+|. ++.+++|++|++++|.+..++..+.++++|++|++++|.+
T Consensus        34 ~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~  112 (266)
T d1p9ag_          34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL  112 (266)
T ss_dssp             CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCC
T ss_pred             CEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            589999999999975 68999999999999999988864 5789999999999999999999999999999999999998


Q ss_pred             ccccccccccccccCCccCcEEEeecCCh-----HhH---hhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCCC
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EAL---KELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDAD  150 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~---~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~~  150 (437)
                      .+..     +..+..+.++++|++++|..     ..+   ..+..|...+|.+..+| ..+..+++|++|+|++|+|+ .
T Consensus       113 ~~~~-----~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~  186 (266)
T d1p9ag_         113 TSLP-----LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (266)
T ss_dssp             CCCC-----SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             ceee-----ccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-c
Confidence            8543     45578899999999999972     223   34444444477787777 45788999999999999999 7


Q ss_pred             CCCCchhhhhhcCCCCCCCCchhccceeeecCCCCcc
Q 047084          151 SPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       151 ~p~~~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~  187 (437)
                      +|..+.-               ...++.|+|++|.+.
T Consensus       187 lp~~~~~---------------~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         187 IPKGFFG---------------SHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTT---------------TCCCSEEECCSCCBC
T ss_pred             cChhHCC---------------CCCCCEEEecCCCCC
Confidence            8865421               122456777777764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=2.3e-16  Score=136.89  Aligned_cols=164  Identities=12%  Similarity=0.143  Sum_probs=122.4

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCc-ccC-hhhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceee
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVK-IIP-KSIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQY   77 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n   77 (437)
                      ++++.++++++++|+.+.  .++++|+|++|+|. .++ ..|.++++|++|++++|.+..++. .+..+++|++|+|++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            368899999999998874  68999999999996 354 567889999999999888887765 5889999999999999


Q ss_pred             ccccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCCCCCCCc-
Q 047084           78 NYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDADSPSPL-  155 (437)
Q Consensus        78 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~~~p~~~-  155 (437)
                      ++++..     |..|.++++|++|+|++|+                +..+| .+|..+++|++|+|++|.+....+... 
T Consensus        89 ~l~~l~-----~~~F~~l~~L~~L~L~~N~----------------l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~  147 (192)
T d1w8aa_          89 KIKEIS-----NKMFLGLHQLKTLNLYDNQ----------------ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             CCCEEC-----SSSSTTCTTCCEEECCSSC----------------CCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             cccccC-----HHHHhCCCcccccccCCcc----------------ccccCHHHhcCCcccccccccccccccccchHHH
Confidence            999432     4568999999999999975                34444 567889999999999999985322211 


Q ss_pred             --hhhhhhcCCCCC--CCCchhccceeeecCCCCcc
Q 047084          156 --SFKDALVHPEQY--RSSEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       156 --~~~~~~l~~n~l--~~~~~~~~~~~L~L~~n~l~  187 (437)
                        .+....+..+.+  ..+......+.++|+.|+|+
T Consensus       148 ~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         148 AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             HHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCC
T ss_pred             hhhhhhhcccCCCeEeCCChhhcCCEeeecCHhhCc
Confidence              122333444444  12222223455778888775

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1e-16  Score=148.03  Aligned_cols=149  Identities=20%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEcc-CCcccccch-hhcCCcCCcEEecee
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLK-NTLVRELPV-EIRNLKRLRYLMVYQ   76 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~-~~~~~~lp~-~~~~L~~L~~L~l~~   76 (437)
                      ++|+|++|+|+++|+ .|.++++|++|++++|.+..++ ..+.++..++.+... .+.++.++. .|.++++|++|++++
T Consensus        35 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~  114 (284)
T d1ozna_          35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR  114 (284)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCC
Confidence            345566666655554 3555555666666655554433 233445555555544 444544433 355566666666666


Q ss_pred             eccccccccccccccccCCccCcEEEeecCCh-----HhHhhcc---chHhcccccccCC-chhhcCCCCCeEEeeCCcC
Q 047084           77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALKELM---KLRQLRNLLKTIP-PPLAADRSTKKARFRSHEV  147 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~~L~---~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l  147 (437)
                      |.+....     +..+..+.+|+.+++++|+.     ..+..+.   .|..-+|.+..+| .++.++++|+++++++|++
T Consensus       115 n~~~~~~-----~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         115 CGLQELG-----PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             SCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccc-----ccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence            5554221     23345555566666655541     1122222   2222234444433 3344555555555555555


Q ss_pred             CCCCCCC
Q 047084          148 DADSPSP  154 (437)
Q Consensus       148 ~~~~p~~  154 (437)
                      ++..|..
T Consensus       190 ~~i~~~~  196 (284)
T d1ozna_         190 AHVHPHA  196 (284)
T ss_dssp             CEECTTT
T ss_pred             cccChhH
Confidence            5444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.9e-16  Score=125.96  Aligned_cols=103  Identities=18%  Similarity=0.254  Sum_probs=92.4

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      |+|+|++|+++.++ .+.++.+|++|++++|+|..+|+.++.+++|++|++++|.++.+|. +.++++|++|++++|+++
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCccC
Confidence            79999999999997 5899999999999999999999999999999999999999999974 999999999999999998


Q ss_pred             cccccccccccccCCccCcEEEeecCChH
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSE  109 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~  109 (437)
                      ...   . ...++.+++|+.|++++|+..
T Consensus        79 ~~~---~-~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          79 QSA---A-IQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSS---T-TGGGGGCTTCCEEECTTSGGG
T ss_pred             CCC---C-chhhcCCCCCCEEECCCCcCC
Confidence            432   1 245788999999999998743

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=3.7e-16  Score=145.70  Aligned_cols=178  Identities=17%  Similarity=0.210  Sum_probs=123.8

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccch-hhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPV-EIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~n~   78 (437)
                      +.+|-++++++++|..+.  +++++|+|++|+|+.+|+ +|.++++|++|++++|.+..+++ .|.++++|++|++++|+
T Consensus        13 ~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            356777888999998774  589999999999998886 68899999999999888888754 59999999999999999


Q ss_pred             cccccccccccccccCCccCcEEEeecCChHh-----HhhccchHhc---ccc---cccCCchhhcCCCCCeEEeeCCcC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA-----LKELMKLRQL---RNL---LKTIPPPLAADRSTKKARFRSHEV  147 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-----~~~L~~L~~l---~n~---~~~ip~~~~~l~~L~~L~l~~N~l  147 (437)
                      ++      .+|..+  ...|+.|.+..|....     +.....+..+   .+.   ....+..+..+++|+.+++++|.+
T Consensus        91 l~------~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          91 LK------ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CS------BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             cC------cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            88      456543  3567888888876322     2222222222   221   233345677788888888888888


Q ss_pred             CCCCCCCc--hhhhhhcCCCCCCC-----CchhccceeeecCCCCcccC
Q 047084          148 DADSPSPL--SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVTIG  189 (437)
Q Consensus       148 ~~~~p~~~--~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~~~  189 (437)
                      + .+|..+  ++..+.+++|....     +......+.|++++|+++..
T Consensus       163 ~-~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~  210 (305)
T d1xkua_         163 T-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  210 (305)
T ss_dssp             C-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             c-ccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccc
Confidence            7 455433  45556666666511     22233456678888877633

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.4e-16  Score=151.36  Aligned_cols=78  Identities=22%  Similarity=0.339  Sum_probs=69.0

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|+++++.|+.+ +.+..|++|++|++++|+|+.+|+ +.++++|++|++++|.+..+++ ++++++|+.|++++|.++
T Consensus        47 ~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~~~~  123 (384)
T d2omza2          47 TTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT  123 (384)
T ss_dssp             CEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             CEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-cccccccccccccccccc
Confidence            5799999999988 478899999999999999988864 8899999999999988888875 889999999999988876


Q ss_pred             c
Q 047084           81 A   81 (437)
Q Consensus        81 ~   81 (437)
                      +
T Consensus       124 ~  124 (384)
T d2omza2         124 D  124 (384)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-15  Score=140.87  Aligned_cols=214  Identities=12%  Similarity=0.124  Sum_probs=137.5

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCcccccchh-hcCCcCCcEEece-eec
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVY-QYN   78 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~-~n~   78 (437)
                      .++.++++++++|..+.  ..+++|+|++|+|+.+|+ +|.++++|++|++++|.+..++.. +..++.++.+... .|.
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            45677888999998764  578999999999998885 688999999999999888888765 7788999998765 455


Q ss_pred             cccccccccccccccCCccCcEEEeecCCh-----HhHh---hccchHhcccccccCC-chhhcCCCCCeEEeeCCcCCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS-----EALK---ELMKLRQLRNLLKTIP-PPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~-----~~~~---~L~~L~~l~n~~~~ip-~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      ++...     |..|.++++|++|++++|..     ..+.   +|..+..-+|.+..+| ..+..+++|+.|++++|++++
T Consensus        93 ~~~l~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_          93 LRSVD-----PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             CCCCC-----TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ccccc-----chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc
Confidence            55322     56689999999999999862     2222   3333333356666665 345667777777777777774


Q ss_pred             CCCCCchhhhhhcCCCCCCCCchhccceeeecCCCCcccCCCCCCCeEeechHHHhhhcccccceEEEEecCCCcCHHHH
Q 047084          150 DSPSPLSFKDALVHPEQYRSSEDAEMEEEWDLEPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVL  229 (437)
Q Consensus       150 ~~p~~~~~~~~~l~~n~l~~~~~~~~~~~L~L~~n~l~~~~~~~lp~l~l~~n~l~~l~~~~~~~l~~~l~~~~ls~n~l  229 (437)
                      ..+..+.               ....++.+++++|+++...+..+..          +         .++..++++.|.+
T Consensus       168 l~~~~f~---------------~l~~L~~l~l~~N~l~~i~~~~f~~----------l---------~~L~~L~l~~N~i  213 (284)
T d1ozna_         168 VPERAFR---------------GLHSLDRLLLHQNRVAHVHPHAFRD----------L---------GRLMTLYLFANNL  213 (284)
T ss_dssp             ECTTTTT---------------TCTTCCEEECCSSCCCEECTTTTTT----------C---------TTCCEEECCSSCC
T ss_pred             cchhhhc---------------cccccchhhhhhccccccChhHhhh----------h---------hhccccccccccc
Confidence            3333321               1122344455555554221111100          0         0111122333333


Q ss_pred             HHHHHhcccCCCceEEEEcCCcEEEEE
Q 047084          230 CNRLKVMWHQIHDFSVIDLENNYFLIR  256 (437)
Q Consensus       230 ~~~l~~~w~~~~~l~~l~l~~N~f~~~  256 (437)
                      ....+.++.....++.+++++|.+...
T Consensus       214 ~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         214 SALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ccccccccccccccCEEEecCCCCCCC
Confidence            333444556677888999998887743

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=5e-15  Score=129.08  Aligned_cols=137  Identities=24%  Similarity=0.338  Sum_probs=75.5

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.+++++ .+..+++|++|++++|++..+++ ++++++|++|++++|.+..++. +.++++|+.|++++|.+.
T Consensus        43 ~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~~~  119 (199)
T d2omxa2          43 TTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT  119 (199)
T ss_dssp             CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC
T ss_pred             CEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-cccccccccccccccccc
Confidence            35666666666653 45666666666666666655543 5666666666666665555553 566666666666666655


Q ss_pred             cccccccccccccCCccCcEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      ..       ..+..+++|+.|++++|+...   +..+..|..+   +|.+..++ .+.++++|++|++++|+++
T Consensus       120 ~~-------~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         120 DI-------DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CC-------GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred             cc-------cccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCc-cccCCCCCCEEECCCCCCC
Confidence            21       235556666666666665221   2222222222   34444443 2455555555555555555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=6.2e-15  Score=137.24  Aligned_cols=178  Identities=22%  Similarity=0.287  Sum_probs=116.5

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCccc-ChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeec
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVKII-PKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYN   78 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~   78 (437)
                      |+|+|++|+|+++|+ .|.++++|++|++++|.+..+ |..|.++++|++|++++|.+..+|..+  ...|+.|+++.|.
T Consensus        34 ~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~  111 (305)
T d1xkua_          34 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENE  111 (305)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSC
T ss_pred             CEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhccccc
Confidence            689999999999987 689999999999999999876 467889999999999999999999764  3578899999998


Q ss_pred             cccccccccccccccCCccCcEEEeecCC-------hHhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEAD-------SEALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~-------~~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      +.+..     +..+.....++.+....|.       ...+..+..|+.+   ++.+..+|..+  +++|++|++++|.++
T Consensus       112 l~~l~-----~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         112 ITKVR-----KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKIT  184 (305)
T ss_dssp             CCBBC-----HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCC
T ss_pred             hhhhh-----hhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCC
Confidence            87432     2234455556666665553       1223333333332   44445555432  456666666666666


Q ss_pred             CCCCCCc----hhhhhhcCCCCCCC-----CchhccceeeecCCCCcc
Q 047084          149 ADSPSPL----SFKDALVHPEQYRS-----SEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       149 ~~~p~~~----~~~~~~l~~n~l~~-----~~~~~~~~~L~L~~n~l~  187 (437)
                      +..+..+    .+..+.++.|.+..     +.....++.|+|++|+++
T Consensus       185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             CCChhHhhccccccccccccccccccccccccccccceeeeccccccc
Confidence            4433332    23334455555511     122233456666666665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1.9e-14  Score=126.47  Aligned_cols=120  Identities=19%  Similarity=0.298  Sum_probs=63.8

Q ss_pred             CCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccC
Q 047084           19 NLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNL   98 (437)
Q Consensus        19 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L   98 (437)
                      .|..|+.|++++|.+..++ .+..+++|++|++++|.++.+++ ++.|++|++|++++|+++      .+| .+..+++|
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~------~l~-~l~~l~~L  114 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK------DLS-SLKDLKKL  114 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC------CGG-GGTTCTTC
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccc------ccc-cccccccc
Confidence            3455666666666665543 35556666666666555555553 455666666666666655      233 35556666


Q ss_pred             cEEEeecCChHh---HhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           99 QKLCIIEADSEA---LKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        99 ~~L~l~~n~~~~---~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      +.|++++|....   +..+..++.+   .+.+... ..+..+++|+++++++|+++
T Consensus       115 ~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~-~~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2         115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            666666554222   2222222222   2233322 24556666777777777666

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=122.30  Aligned_cols=84  Identities=21%  Similarity=0.331  Sum_probs=45.8

Q ss_pred             ccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeecccccccccccccc-ccCC
Q 047084           17 VGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEG-FGSL   95 (437)
Q Consensus        17 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~-~~~l   95 (437)
                      +.++..|+.|+|++|+|+.+|..+..+++|++|++++|.+..++ ++..+++|++|++++|+++      .+|.. +..+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~------~l~~~~~~~l   86 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRIC------RIGEGLDQAL   86 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCC------EECSCHHHHC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccccc------CCCccccccc
Confidence            34455555666666665555544445555666666655555553 3555556666666666555      23333 3445


Q ss_pred             ccCcEEEeecCC
Q 047084           96 TNLQKLCIIEAD  107 (437)
Q Consensus        96 ~~L~~L~l~~n~  107 (437)
                      ++|+.|++++|+
T Consensus        87 ~~L~~L~L~~N~   98 (162)
T d1a9na_          87 PDLTELILTNNS   98 (162)
T ss_dssp             TTCCEEECCSCC
T ss_pred             cccccceecccc
Confidence            556666655554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.52  E-value=2e-14  Score=124.48  Aligned_cols=103  Identities=19%  Similarity=0.264  Sum_probs=89.9

Q ss_pred             CEEEecCCCCCc-CCc-cccCCCCCcEEEeecccCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEecee
Q 047084            1 KVLDLEDAPVDY-LPE-GVGNLFNLHYLSVKNTKVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQ   76 (437)
Q Consensus         1 ~~L~L~~n~l~~-lp~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~   76 (437)
                      ++|+|++|+|+. ++. .|.++++|+.|+|++|.+..++ ..+..+++|++|++++|.+..+|+. |.++++|++|+|++
T Consensus        32 ~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~  111 (192)
T d1w8aa_          32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCC
Confidence            589999999965 544 5789999999999999997554 6788899999999999999999875 89999999999999


Q ss_pred             eccccccccccccccccCCccCcEEEeecCCh
Q 047084           77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADS  108 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~  108 (437)
                      |+|++..     |..|..+++|++|+|++|..
T Consensus       112 N~l~~i~-----~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         112 NQISCVM-----PGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SCCCEEC-----TTSSTTCTTCCEEECTTCCB
T ss_pred             ccccccC-----HHHhcCCccccccccccccc
Confidence            9999443     45689999999999999974

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=4.6e-14  Score=112.82  Aligned_cols=102  Identities=19%  Similarity=0.293  Sum_probs=89.3

Q ss_pred             cEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEe
Q 047084           24 HYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCI  103 (437)
Q Consensus        24 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l  103 (437)
                      ++|+|++|+|+.++ .+.++++|++|++++|.++.+|+.++.+++|+.|++++|.++      .+| .+..+++|+.|++
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~------~l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE------NVD-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC------CCG-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccc------ccC-ccccccccCeEEC
Confidence            57999999999886 489999999999999999999999999999999999999998      445 4899999999999


Q ss_pred             ecCChHhHhhccchHhcccccccCC--chhhcCCCCCeEEeeCCcCCC
Q 047084          104 IEADSEALKELMKLRQLRNLLKTIP--PPLAADRSTKKARFRSHEVDA  149 (437)
Q Consensus       104 ~~n~~~~~~~L~~L~~l~n~~~~ip--~~~~~l~~L~~L~l~~N~l~~  149 (437)
                      ++|+.                ..+|  ..++.+++|+.|++++|+++.
T Consensus        73 ~~N~i----------------~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          73 CNNRL----------------QQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CSSCC----------------CSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCcc----------------CCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            99753                3333  357788999999999999983

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=1.1e-13  Score=122.85  Aligned_cols=160  Identities=18%  Similarity=0.214  Sum_probs=78.6

Q ss_pred             cCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCcc
Q 047084           18 GNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTN   97 (437)
Q Consensus        18 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~   97 (437)
                      ..|.+|+.|++.+|.|..+ +.+.+|++|++|++++|.+..+++ +..+++|+++++++|.++      .++ .+..+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~------~i~-~l~~l~~  108 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK------NVS-AIAGLQS  108 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS------CCG-GGTTCTT
T ss_pred             HHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc-cccccccccccccccccc------ccc-ccccccc
Confidence            4455566666666655555 245556666666666555554443 555556666666655554      222 3455555


Q ss_pred             CcEEEeecCChHhH---hhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCC--CCCchhhhhhcCCCCCCC
Q 047084           98 LQKLCIIEADSEAL---KELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADS--PSPLSFKDALVHPEQYRS  169 (437)
Q Consensus        98 L~~L~l~~n~~~~~---~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~--p~~~~~~~~~l~~n~l~~  169 (437)
                      |+.++++++....+   .....+..+   ++.+... ..+..+++|++|++++|.+++..  ....++..+.+++|++..
T Consensus       109 L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccccccchhccccchhhhhchhhhhchh-hhhccccccccccccccccccchhhcccccceecccCCCccCC
Confidence            66665555542211   111111111   1111111 23445555666666666555211  111234455555555521


Q ss_pred             ---CchhccceeeecCCCCcc
Q 047084          170 ---SEDAEMEEEWDLEPGDVT  187 (437)
Q Consensus       170 ---~~~~~~~~~L~L~~n~l~  187 (437)
                         +.....++.|+|++|+++
T Consensus       188 l~~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         188 ISPLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             CGGGGGCTTCCEEECTTSCCC
T ss_pred             ChhhcCCCCCCEEECcCCcCC
Confidence               222345677899999887

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=1.2e-13  Score=121.31  Aligned_cols=140  Identities=23%  Similarity=0.332  Sum_probs=115.4

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|.++.++ .+..+++|++|++++|+|+.++ .++++++|++|++++|.++.+| .+.++++|+.|++++|.+.
T Consensus        49 ~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~  125 (210)
T d1h6ta2          49 DQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGIS  125 (210)
T ss_dssp             CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCC
T ss_pred             cEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccccccccccccccccccc
Confidence            57899999999886 5889999999999999998876 4788999999999999999888 5899999999999999887


Q ss_pred             cccccccccccccCCccCcEEEeecCCh---HhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADS---EALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSP  152 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~---~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p  152 (437)
                            .+ ..+..+++|+.++++.|..   ..+..++.|+.+   +|.+..+++ +.++++|++|++++|+|+ .+|
T Consensus       126 ------~~-~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~-~l~  194 (210)
T d1h6ta2         126 ------DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLR  194 (210)
T ss_dssp             ------CC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-BCG
T ss_pred             ------cc-cccccccccccccccccccccccccccccccccccccccccccccc-ccCCCCCCEEECCCCCCC-CCh
Confidence                  23 3588899999999999873   233334444443   667777764 889999999999999998 454

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.7e-13  Score=120.49  Aligned_cols=182  Identities=17%  Similarity=0.179  Sum_probs=128.0

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccCh-hhhcccCCCEEEccCCccc-ccch-hhcCCcCCcEEecee-
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPK-SIGNLLGLETLDLKNTLVR-ELPV-EIRNLKRLRYLMVYQ-   76 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~~~~~-~lp~-~~~~L~~L~~L~l~~-   76 (437)
                      ++++.+++.++++|+.+.  .++++|++++|+|..+|. +|.++++|++|++++|.+. .+|. .|.++++++++.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            467888889999998764  579999999999998886 5789999999999977655 4554 488999999999875 


Q ss_pred             eccccccccccccccccCCccCcEEEeecCChHhHh---hccchHhc------ccccccCC-chhhcC-CCCCeEEeeCC
Q 047084           77 YNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEALK---ELMKLRQL------RNLLKTIP-PPLAAD-RSTKKARFRSH  145 (437)
Q Consensus        77 n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~---~L~~L~~l------~n~~~~ip-~~~~~l-~~L~~L~l~~N  145 (437)
                      |++...     .+..|.++++|+.|++++|....+.   .+..++.+      ++.+..++ ..+..+ ..++.|++++|
T Consensus        89 n~l~~~-----~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1          89 NNLLYI-----NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             TTCCEE-----CTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             cccccc-----ccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence            566532     2556899999999999999743332   22222222      33455555 344555 47899999999


Q ss_pred             cCCCCCCCCc---hhhhh-hcCCCCCC---C--CchhccceeeecCCCCcccC
Q 047084          146 EVDADSPSPL---SFKDA-LVHPEQYR---S--SEDAEMEEEWDLEPGDVTIG  189 (437)
Q Consensus       146 ~l~~~~p~~~---~~~~~-~l~~n~l~---~--~~~~~~~~~L~L~~n~l~~~  189 (437)
                      +++...+..+   .+..+ .++.|++.   .  +.....++.|+|++|+++..
T Consensus       164 ~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         164 GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             cccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCcc
Confidence            9984333333   22233 35667762   1  33446678899999999733

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.9e-13  Score=114.68  Aligned_cols=124  Identities=16%  Similarity=0.156  Sum_probs=100.0

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeecc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYNY   79 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~l   79 (437)
                      |+|||++|+|+.+|..+..+.+|+.|+|++|.|..++ .+..+++|++|++++|.+..+|+. +..+++|++|++++|++
T Consensus        21 r~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i   99 (162)
T d1a9na_          21 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL   99 (162)
T ss_dssp             EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred             cEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccc
Confidence            5799999999999877788999999999999998885 588999999999999999999886 57899999999999999


Q ss_pred             ccccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEE
Q 047084           80 TAGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKAR  141 (437)
Q Consensus        80 ~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~  141 (437)
                      +...   .+ ..+..+++|++|++++|....++..+            +..+..+++|+.||
T Consensus       100 ~~~~---~l-~~l~~l~~L~~L~l~~N~i~~~~~~r------------~~~i~~lp~L~~LD  145 (162)
T d1a9na_         100 VELG---DL-DPLASLKSLTYLCILRNPVTNKKHYR------------LYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCGG---GG-GGGGGCTTCCEEECCSSGGGGSTTHH------------HHHHHHCTTCSEET
T ss_pred             cccc---cc-cccccccccchhhcCCCccccccchH------------HHHHHHCCCcCeeC
Confidence            8431   11 35788999999999998643322110            12466788888876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.40  E-value=1.2e-12  Score=123.36  Aligned_cols=76  Identities=24%  Similarity=0.269  Sum_probs=48.1

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcc-----------------cCCCEEEccCCcccccchhh
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNL-----------------LGLETLDLKNTLVRELPVEI   63 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l-----------------~~L~~L~l~~~~~~~lp~~~   63 (437)
                      ++|||++|.++++|+.   +++|++|+|++|+|+++|..+++|                 ..|++|++++|.+..+|. +
T Consensus        41 ~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~lp~-~  116 (353)
T d1jl5a_          41 HELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-L  116 (353)
T ss_dssp             SEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCC-C
T ss_pred             CEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccchhhhhhhhhhhcccchhhhhccccccccccccccccccc-h
Confidence            4678888888878753   456777888888877777554321                 235556665555555553 4


Q ss_pred             cCCcCCcEEeceeeccc
Q 047084           64 RNLKRLRYLMVYQYNYT   80 (437)
Q Consensus        64 ~~L~~L~~L~l~~n~l~   80 (437)
                      +.+++|++|++++|.++
T Consensus       117 ~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         117 QNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             TTCTTCCEEECCSSCCS
T ss_pred             hhhccceeecccccccc
Confidence            55666666666666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=6.9e-13  Score=115.21  Aligned_cols=129  Identities=22%  Similarity=0.315  Sum_probs=105.4

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|++++|+++.+++ ++++++|++|++++|.+..++ .+.++++|++|+++++....++ .+.++++|+.|++++|++.
T Consensus        65 ~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2          65 TQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCC
T ss_pred             CcCccccccccCccc-ccCCccccccccccccccccc-cccccccccccccccccccccc-ccchhhhhHHhhhhhhhhc
Confidence            589999999998864 899999999999999998776 4889999999999988777665 4889999999999999987


Q ss_pred             cccccccccccccCCccCcEEEeecCChH---hHhhccchHhc---ccccccCCchhhcCCCCCeE
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSE---ALKELMKLRQL---RNLLKTIPPPLAADRSTKKA  140 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~---~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L  140 (437)
                      .      ++ .+..+++|+.|++.+|...   .+.+++.|+.+   +|.+..+| .++.+++|++|
T Consensus       142 ~------~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         142 D------IS-ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             C------CG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             c------cc-cccccccccccccccccccCCccccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            3      33 5889999999999999732   33344444444   67788776 58889999876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=8.7e-13  Score=125.99  Aligned_cols=176  Identities=16%  Similarity=0.190  Sum_probs=85.4

Q ss_pred             cccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCC
Q 047084           16 GVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSL   95 (437)
Q Consensus        16 ~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l   95 (437)
                      .+..+++++.|++++|.+..+++ +..+.+|++|++++|.+..+| .+..+++|+.|++++|.+++.      + .++.+
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~------~-~~~~~  262 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL------A-PLSGL  262 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC------G-GGTTC
T ss_pred             ccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCC------C-ccccc
Confidence            34455555666666655544432 344555566666555555543 355555566666666555532      2 24555


Q ss_pred             ccCcEEEeecCChHhHh---hccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCC--CCchhhhhhcCCCCC
Q 047084           96 TNLQKLCIIEADSEALK---ELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSP--SPLSFKDALVHPEQY  167 (437)
Q Consensus        96 ~~L~~L~l~~n~~~~~~---~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~~~~~l~~n~l  167 (437)
                      ++|++|++++|....+.   .+..+..+   .+.+..++ .+..+++++.|++++|++++..|  ...++..+.+++|++
T Consensus       263 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccCCEeeccCcccCCCCcccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCC
Confidence            55666665555422221   11111111   22333322 34555556666666666653211  112344555555555


Q ss_pred             CC---CchhccceeeecCCCCcccCC----CCCCCeEeech
Q 047084          168 RS---SEDAEMEEEWDLEPGDVTIGD----DGTMPTIKFSK  201 (437)
Q Consensus       168 ~~---~~~~~~~~~L~L~~n~l~~~~----~~~lp~l~l~~  201 (437)
                      ..   +.....++.|++++|+++...    ...+..+.+++
T Consensus       342 ~~l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         342 SDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCC
T ss_pred             CCChhHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCC
Confidence            21   222334677888888887332    13444445544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=1e-12  Score=116.56  Aligned_cols=170  Identities=18%  Similarity=0.206  Sum_probs=128.0

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      +.|++++|.|++++ .+.+|++|++|++++|.+..+++ +..+++|+++++++|.++.++ .+.++++|+.++++.+...
T Consensus        44 ~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~  120 (227)
T d1h6ua2          44 TTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQIT  120 (227)
T ss_dssp             CEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCC
T ss_pred             CEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc-ccccccccccccccccccc
Confidence            57899999999994 69999999999999999987653 889999999999988888876 4889999999999999887


Q ss_pred             cccccccccccccCCccCcEEEeecCCh---HhHhhccchHhc---ccccccCCchhhcCCCCCeEEeeCCcCCCCCCC-
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADS---EALKELMKLRQL---RNLLKTIPPPLAADRSTKKARFRSHEVDADSPS-  153 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~---~~~~~L~~L~~l---~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~~p~-  153 (437)
                      +.       ..+.....++.+.++.+..   ..+.....|+.+   ++.+..++ .+.++++|++|+|++|++++ ++. 
T Consensus       121 ~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~-l~~l  191 (227)
T d1h6ua2         121 DV-------TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISD-ISPL  191 (227)
T ss_dssp             CC-------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-CGGG
T ss_pred             cc-------chhccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCccCC-Chhh
Confidence            43       2366778899999988762   233343344443   55555444 47899999999999999984 443 


Q ss_pred             --CchhhhhhcCCCCCCCC---chhccceeeecC
Q 047084          154 --PLSFKDALVHPEQYRSS---EDAEMEEEWDLE  182 (437)
Q Consensus       154 --~~~~~~~~l~~n~l~~~---~~~~~~~~L~L~  182 (437)
                        ..++..+.+++|++...   .....++.|+++
T Consensus       192 ~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             cCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence              23667788899987322   223334555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=5e-14  Score=122.40  Aligned_cols=126  Identities=18%  Similarity=0.252  Sum_probs=94.8

Q ss_pred             EEecCC--CCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            3 LDLEDA--PVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         3 L~L~~n--~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++++++  .+..+|.++..|.+|++|+|++|+|+.++ .+..+++|++|++++|.++.+|..+..+++|++|++++|+++
T Consensus        28 ~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          28 VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             EECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECC
T ss_pred             eeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccccc
Confidence            344444  35667777888888999999988888775 588888899999988888888876666778888999888887


Q ss_pred             cccccccccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCC
Q 047084           81 AGFAAAKLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDAD  150 (437)
Q Consensus        81 ~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~  150 (437)
                            .++ .+..+++|+.|++++|+...+..+              ..+..+++|++|++++|++...
T Consensus       107 ------~l~-~~~~l~~L~~L~L~~N~i~~~~~~--------------~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         107 ------SLS-GIEKLVNLRVLYMSNNKITNWGEI--------------DKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             ------CHH-HHHHHHHSSEEEESEEECCCHHHH--------------HHHTTTTTCSEEEECSSHHHHH
T ss_pred             ------ccc-cccccccccccccccchhcccccc--------------ccccCCCccceeecCCCccccC
Confidence                  333 467788888888888754332211              2467788999999999998743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=2.4e-13  Score=118.01  Aligned_cols=132  Identities=20%  Similarity=0.170  Sum_probs=102.3

Q ss_pred             CEEEecCCCCCcCCccccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccc
Q 047084            1 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYT   80 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~   80 (437)
                      ++|+|++|+|+.++ .+.++++|++|+|++|.|+.+|.....+.+|++|++++|.++.++ .+..+++|++|++++|+++
T Consensus        51 ~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~i~  128 (198)
T d1m9la_          51 KHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             CEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEECC
T ss_pred             ceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-cccccccccccccccchhc
Confidence            57999999999996 689999999999999999999877777889999999999999885 4889999999999999998


Q ss_pred             ccccccccc--ccccCCccCcEEEeecCChHhHhh-ccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           81 AGFAAAKLH--EGFGSLTNLQKLCIIEADSEALKE-LMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        81 ~~~~~~~lp--~~~~~l~~L~~L~l~~n~~~~~~~-L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      .      ++  ..+..+++|+.|++++|+...... .......+      ...+..+++|+.||  +..++
T Consensus       129 ~------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r------~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         129 N------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR------IEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             C------HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHH------HHHHHHCSSCCEES--SGGGT
T ss_pred             c------ccccccccCCCccceeecCCCccccCcccccchhhHH------HHHHHHCCCcCEeC--CccCC
Confidence            3      34  358899999999999997433211 11000000      01256778888876  55555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.2e-12  Score=103.41  Aligned_cols=101  Identities=16%  Similarity=0.051  Sum_probs=81.7

Q ss_pred             EEEecCCCCCcCCccccCCCCCcEEEeecc-cCcccC-hhhhcccCCCEEEccCCcccccchh-hcCCcCCcEEeceeec
Q 047084            2 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNT-KVKIIP-KSIGNLLGLETLDLKNTLVRELPVE-IRNLKRLRYLMVYQYN   78 (437)
Q Consensus         2 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~n-~l~~lp-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~n~   78 (437)
                      .++.+++.+.++|..+.++++|+.|++++| .|+.++ .+|.++++|+.|++++|.++.+++. |..+++|++|+|++|+
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            467788888888888888999999999766 488777 4578899999999998888888654 8899999999999999


Q ss_pred             cccccccccccccccCCccCcEEEeecCCh
Q 047084           79 YTAGFAAAKLHEGFGSLTNLQKLCIIEADS  108 (437)
Q Consensus        79 l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~  108 (437)
                      ++      .+|.......+|+.|+|++|.+
T Consensus        92 l~------~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          92 LE------SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CS------CCCSTTTCSCCCCEEECCSSCC
T ss_pred             Cc------ccChhhhccccccccccCCCcc
Confidence            88      4566544445788999988874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.3e-11  Score=110.26  Aligned_cols=81  Identities=15%  Similarity=0.240  Sum_probs=68.8

Q ss_pred             CEEEecCCCCCcCCc-cccCCCCCcEEEeecccCc-ccC-hhhhcccCCCEEEcc-CCcccccch-hhcCCcCCcEEece
Q 047084            1 KVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTKVK-IIP-KSIGNLLGLETLDLK-NTLVRELPV-EIRNLKRLRYLMVY   75 (437)
Q Consensus         1 ~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~l~-~~~~~~lp~-~~~~L~~L~~L~l~   75 (437)
                      ++|++++|+|+.+|. .|.++++|++|++++|.+. .+| ..+.+++.++++.+. ++.+..++. .|.++++|++|+++
T Consensus        32 ~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~  111 (242)
T d1xwdc1          32 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS  111 (242)
T ss_dssp             SEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEE
T ss_pred             CEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccc
Confidence            589999999999987 5799999999999999985 455 457789999999987 566666655 48999999999999


Q ss_pred             eecccc
Q 047084           76 QYNYTA   81 (437)
Q Consensus        76 ~n~l~~   81 (437)
                      +|.++.
T Consensus       112 ~~~l~~  117 (242)
T d1xwdc1         112 NTGIKH  117 (242)
T ss_dssp             SCCCCS
T ss_pred             hhhhcc
Confidence            999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.9e-11  Score=98.40  Aligned_cols=109  Identities=13%  Similarity=0.095  Sum_probs=90.9

Q ss_pred             CCCCCcEEEeecccCcccChhhhcccCCCEEEcc-CCcccccchh-hcCCcCCcEEeceeeccccccccccccccccCCc
Q 047084           19 NLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLK-NTLVRELPVE-IRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLT   96 (437)
Q Consensus        19 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~-~~~~~~lp~~-~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~   96 (437)
                      .....+.++.+++.+.++|..+..+++|++|+++ ++.++.++.. |.++++|+.|+|++|+|++..     |..|..++
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-----~~~f~~l~   80 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-----PDAFHFTP   80 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-----TTGGGSCS
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-----cccccccc
Confidence            3445677899999998889999999999999997 5579999765 999999999999999999432     56689999


Q ss_pred             cCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           97 NLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        97 ~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      +|++|+|++|+                +..+|.......+|++|+|++|++.
T Consensus        81 ~L~~L~Ls~N~----------------l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 RLSRLNLSFNA----------------LESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSC----------------CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccceeccCCC----------------CcccChhhhccccccccccCCCccc
Confidence            99999999865                4567766555567999999999996

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.88  E-value=4e-09  Score=98.50  Aligned_cols=113  Identities=23%  Similarity=0.174  Sum_probs=73.5

Q ss_pred             CCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcE
Q 047084           21 FNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQK  100 (437)
Q Consensus        21 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~  100 (437)
                      .+|+.|+|++|.++++|+.   +++|++|++++|.++.+|..+   .+|+.|++++|+++...   .+|      +.|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~---~lp------~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALS---DLP------PLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCC---SCC------TTCCE
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhh---hhc------ccccc
Confidence            4699999999999999964   568999999999999999754   46777777777776221   222      24666


Q ss_pred             EEeecCChHhHh---hccchHhc---ccccc-------------------cCCchhhcCCCCCeEEeeCCcCC
Q 047084          101 LCIIEADSEALK---ELMKLRQL---RNLLK-------------------TIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus       101 L~l~~n~~~~~~---~L~~L~~l---~n~~~-------------------~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      |++++|....++   .++.|+.+   ++.+.                   ..+..+..++.++.+++++|.+.
T Consensus       103 L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         103 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             EECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccccchhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccc
Confidence            666666533322   22222222   11111                   11233556777888888888877

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.5e-09  Score=97.60  Aligned_cols=85  Identities=13%  Similarity=0.151  Sum_probs=43.0

Q ss_pred             cCCCCCcEEEeecccCc--ccChhhhcccCCCEEEccCCccc-ccchhhcCCcCCcEEeceee-cccccccccccccccc
Q 047084           18 GNLFNLHYLSVKNTKVK--IIPKSIGNLLGLETLDLKNTLVR-ELPVEIRNLKRLRYLMVYQY-NYTAGFAAAKLHEGFG   93 (437)
Q Consensus        18 ~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~n-~l~~~~~~~~lp~~~~   93 (437)
                      .....|++|+++++.+.  .++.-+.++++|++|+++++.+. ..+..++.+++|++|+++++ .++..    .+...+.
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~----~l~~l~~  118 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----ALQTLLS  118 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----HHHHHHH
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc----ccchhhH
Confidence            34445666666666553  23333455666666666644433 33344556666666666653 33311    1222234


Q ss_pred             CCccCcEEEeecC
Q 047084           94 SLTNLQKLCIIEA  106 (437)
Q Consensus        94 ~l~~L~~L~l~~n  106 (437)
                      .+++|++|+++++
T Consensus       119 ~~~~L~~L~ls~c  131 (284)
T d2astb2         119 SCSRLDELNLSWC  131 (284)
T ss_dssp             HCTTCCEEECCCC
T ss_pred             HHHhccccccccc
Confidence            4556666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.69  E-value=5.4e-09  Score=97.93  Aligned_cols=229  Identities=12%  Similarity=0.133  Sum_probs=127.7

Q ss_pred             cCCccccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCccccc----c-------hhhcCCcCCcEEece
Q 047084           12 YLPEGVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVREL----P-------VEIRNLKRLRYLMVY   75 (437)
Q Consensus        12 ~lp~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~l----p-------~~~~~L~~L~~L~l~   75 (437)
                      .+...+.....|+.|+|++|.|+     .+-..+...++|+.|+++++..+..    |       ..+...++|+.|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            44445677889999999999884     2334566788999999985544332    2       225567899999999


Q ss_pred             eeccccccccccccccccCCccCcEEEeecCChHh---------Hh---------hccchHhc---cccc-----ccCCc
Q 047084           76 QYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA---------LK---------ELMKLRQL---RNLL-----KTIPP  129 (437)
Q Consensus        76 ~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~---------~~---------~L~~L~~l---~n~~-----~~ip~  129 (437)
                      +|.++... ...+...+...++|+.|++++|....         +.         ....|+.+   ++.+     ..+..
T Consensus       102 ~n~i~~~~-~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~  180 (344)
T d2ca6a1         102 DNAFGPTA-QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  180 (344)
T ss_dssp             SCCCCTTT-HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             cccccccc-ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc
Confidence            99987432 22455556678899999999987221         11         11112222   2222     12223


Q ss_pred             hhhcCCCCCeEEeeCCcCCCC---------CCCCchhhhhhcCCCCCCC---------CchhccceeeecCCCCcccCCC
Q 047084          130 PLAADRSTKKARFRSHEVDAD---------SPSPLSFKDALVHPEQYRS---------SEDAEMEEEWDLEPGDVTIGDD  191 (437)
Q Consensus       130 ~~~~l~~L~~L~l~~N~l~~~---------~p~~~~~~~~~l~~n~l~~---------~~~~~~~~~L~L~~n~l~~~~~  191 (437)
                      .+...++|++|+|++|.++..         +...-.+..+.++.|.+..         ......++.|+|++|+++    
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~----  256 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS----  256 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC----
T ss_pred             hhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC----
Confidence            455677888888888887621         1111233445556665511         111223455666666654    


Q ss_pred             CCCCeEeechHHHhhhcc---cc--cceEEEEecCCCcCHHHHHHHHHhcccCCCceEEEEcCCcEEE
Q 047084          192 GTMPTIKFSKRIQDKLIK---PW--QNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFL  254 (437)
Q Consensus       192 ~~lp~l~l~~n~l~~l~~---~~--~~~l~~~l~~~~ls~n~l~~~l~~~w~~~~~l~~l~l~~N~f~  254 (437)
                               +.....+..   ..  ..-....+..-.+....+.............++.+++++|.|.
T Consensus       257 ---------~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         257 ---------ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             ---------HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ---------chhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence                     111111111   00  0011122222334444444444444445667888899988885

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.61  E-value=5.8e-09  Score=97.73  Aligned_cols=147  Identities=14%  Similarity=0.148  Sum_probs=89.8

Q ss_pred             CEEEecCCCCCcCC-----------ccccCCCCCcEEEeecccCcc-----cChhhhcccCCCEEEccCCcccccc----
Q 047084            1 KVLDLEDAPVDYLP-----------EGVGNLFNLHYLSVKNTKVKI-----IPKSIGNLLGLETLDLKNTLVRELP----   60 (437)
Q Consensus         1 ~~L~L~~n~l~~lp-----------~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~~~~~~lp----   60 (437)
                      +.|+++++....+.           ..+...++|+.|+|++|.++.     +...+...++|++|++++|.++.-.    
T Consensus        62 ~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l  141 (344)
T d2ca6a1          62 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI  141 (344)
T ss_dssp             CEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH
T ss_pred             CEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccc
Confidence            35777777654332           224567789999999988753     3344566788999999877654210    


Q ss_pred             -h---------hhcCCcCCcEEeceeeccccccccccccccccCCccCcEEEeecCChHh----------HhhccchHhc
Q 047084           61 -V---------EIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSEA----------LKELMKLRQL  120 (437)
Q Consensus        61 -~---------~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~----------~~~L~~L~~l  120 (437)
                       .         .....+.|+.|+++.|.++... ...+...+.....|+.|+++.|+...          +.....|+.+
T Consensus       142 ~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~-~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L  220 (344)
T d2ca6a1         142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGS-MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL  220 (344)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG-HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE
T ss_pred             cccccccccccccccCcccceeecccccccccc-cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccc
Confidence             0         1235677888888888876321 12334445667788888888887211          1122222222


Q ss_pred             ---ccccc-----cCCchhhcCCCCCeEEeeCCcCC
Q 047084          121 ---RNLLK-----TIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus       121 ---~n~~~-----~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                         .|.++     .+...+..+++|++|+|++|.|+
T Consensus       221 ~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         221 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             ccccccccccccccccccccccccchhhhhhcCccC
Confidence               34332     23345667788888888888887

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=9.4e-09  Score=93.64  Aligned_cols=144  Identities=15%  Similarity=0.178  Sum_probs=84.6

Q ss_pred             CEEEecCCCCCc--CCccccCCCCCcEEEeecccCc-ccChhhhcccCCCEEEccC-Ccccc--cchhhcCCcCCcEEec
Q 047084            1 KVLDLEDAPVDY--LPEGVGNLFNLHYLSVKNTKVK-IIPKSIGNLLGLETLDLKN-TLVRE--LPVEIRNLKRLRYLMV   74 (437)
Q Consensus         1 ~~L~L~~n~l~~--lp~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~-~~~~~--lp~~~~~L~~L~~L~l   74 (437)
                      ++||++++.++.  ++.-+.++++|++|+++++.+. ..+..++.+++|++|++++ +.++.  +..-+.++++|++|++
T Consensus        49 ~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~l  128 (284)
T d2astb2          49 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  128 (284)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccc
Confidence            567888777632  3344577888888888888774 5556777788888888874 45543  2222456788888888


Q ss_pred             eee-ccccccccccccccccC-CccCcEEEeecCC----hHhH----hhccchHhc---cc-cc-ccCCchhhcCCCCCe
Q 047084           75 YQY-NYTAGFAAAKLHEGFGS-LTNLQKLCIIEAD----SEAL----KELMKLRQL---RN-LL-KTIPPPLAADRSTKK  139 (437)
Q Consensus        75 ~~n-~l~~~~~~~~lp~~~~~-l~~L~~L~l~~n~----~~~~----~~L~~L~~l---~n-~~-~~ip~~~~~l~~L~~  139 (437)
                      +++ .++..    .+...+.. .++|+.|+++++.    ...+    ..+.+|+.+   ++ .+ ......+..+++|++
T Consensus       129 s~c~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         129 SWCFDFTEK----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             CCCTTCCHH----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccc----cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            875 34311    12223333 3578888887542    1111    222333333   21 22 234455667777777


Q ss_pred             EEeeCC-cCC
Q 047084          140 ARFRSH-EVD  148 (437)
Q Consensus       140 L~l~~N-~l~  148 (437)
                      |+++++ .++
T Consensus       205 L~L~~C~~i~  214 (284)
T d2astb2         205 LSLSRCYDII  214 (284)
T ss_dssp             EECTTCTTCC
T ss_pred             EECCCCCCCC
Confidence            777774 454

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=2.1e-07  Score=89.51  Aligned_cols=108  Identities=14%  Similarity=0.138  Sum_probs=75.4

Q ss_pred             CEEEecCCCCCcC--CccccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCccccc-----chhhc-CCc
Q 047084            1 KVLDLEDAPVDYL--PEGVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVREL-----PVEIR-NLK   67 (437)
Q Consensus         1 ~~L~L~~n~l~~l--p~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~l-----p~~~~-~L~   67 (437)
                      ++||+++|+++..  .+-+..+++|+.|+|++|.|+     .+...+..+++|++|+|++|.++..     ...+. ..+
T Consensus         5 ~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~   84 (460)
T d1z7xw1           5 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC   84 (460)
T ss_dssp             EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred             CEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCC
Confidence            4688888888653  234567888889999998875     3455667788899999987776532     22222 235


Q ss_pred             CCcEEeceeeccccccccccccccccCCccCcEEEeecCChH
Q 047084           68 RLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE  109 (437)
Q Consensus        68 ~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~  109 (437)
                      +|+.|++++|.++... ...++..+..+++|++|++++|...
T Consensus        85 ~L~~L~L~~n~it~~~-~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          85 KIQKLSLQNCCLTGAG-CGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CCCEEECTTSCCBGGG-HHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCEEECCCCCccccc-cccccchhhccccccccccccccch
Confidence            7889999888887431 2245566778888888888888643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.6e-07  Score=87.01  Aligned_cols=80  Identities=16%  Similarity=0.218  Sum_probs=48.6

Q ss_pred             CEEEecCCCCC-----cCCccccCCCCCcEEEeecccCcc-----cChhhh-cccCCCEEEccCCcccc-----cchhhc
Q 047084            1 KVLDLEDAPVD-----YLPEGVGNLFNLHYLSVKNTKVKI-----IPKSIG-NLLGLETLDLKNTLVRE-----LPVEIR   64 (437)
Q Consensus         1 ~~L~L~~n~l~-----~lp~~~~~l~~L~~L~L~~n~l~~-----lp~~~~-~l~~L~~L~l~~~~~~~-----lp~~~~   64 (437)
                      |+|+|++|.++     .|...+..+++|++|+|++|.|+.     +...+. ...+|++|++++|.++.     ++..+.
T Consensus        30 ~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~  109 (460)
T d1z7xw1          30 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR  109 (460)
T ss_dssp             SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred             CEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhh
Confidence            46777777764     223345667777777777777642     111121 12467777777666543     344466


Q ss_pred             CCcCCcEEeceeeccc
Q 047084           65 NLKRLRYLMVYQYNYT   80 (437)
Q Consensus        65 ~L~~L~~L~l~~n~l~   80 (437)
                      .+++|++|++++|.++
T Consensus       110 ~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         110 TLPTLQELHLSDNLLG  125 (460)
T ss_dssp             SCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccch
Confidence            6777777777777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.5e-08  Score=82.71  Aligned_cols=107  Identities=12%  Similarity=0.046  Sum_probs=54.2

Q ss_pred             CcEEEeecccCcccChhhhcccCCCEEEccCCcccccchhhcCCcCCcEEeceeeccccccccccccccccCCccCcEEE
Q 047084           23 LHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPVEIRNLKRLRYLMVYQYNYTAGFAAAKLHEGFGSLTNLQKLC  102 (437)
Q Consensus        23 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~n~l~~~~~~~~lp~~~~~l~~L~~L~  102 (437)
                      .+.|+++++..  . +.+..+..+..+...++....++..+.++++|++|+|++|+++...   .++..+..+++|+.|+
T Consensus        24 ~~~Ldls~l~~--~-~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~---~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          24 QQALDLKGLRS--D-PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLD---DMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SCCBCCCCCSS--C-TTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCS---GGGTHHHHSTTCCCCC
T ss_pred             hCeeecccCCC--C-chhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCc---hhHHHHhhCCcccccc
Confidence            44455554432  1 1233333344444444444444444456677777777777776432   2334455666777777


Q ss_pred             eecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCCCC
Q 047084          103 IIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVDAD  150 (437)
Q Consensus       103 l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~~~  150 (437)
                      +++|....+..+..               ....+|+.|++++|++...
T Consensus        98 Ls~N~i~~l~~l~~---------------l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          98 LSGNELKSERELDK---------------IKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CTTSCCCCGGGHHH---------------HTTCCCSSCCCTTSTTSSS
T ss_pred             cccCccccchhhhh---------------hhccccceeecCCCCcCcC
Confidence            77665433322211               1223466666666666643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=5.9e-08  Score=80.33  Aligned_cols=86  Identities=14%  Similarity=0.029  Sum_probs=57.7

Q ss_pred             ccCCCCCcEEEeecccCcccChhhhcccCCCEEEccCCcccccch---hhcCCcCCcEEeceeeccccccccccccc-cc
Q 047084           17 VGNLFNLHYLSVKNTKVKIIPKSIGNLLGLETLDLKNTLVRELPV---EIRNLKRLRYLMVYQYNYTAGFAAAKLHE-GF   92 (437)
Q Consensus        17 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~~~~~~lp~---~~~~L~~L~~L~l~~n~l~~~~~~~~lp~-~~   92 (437)
                      +..+..+..|+..++.+..++.....+++|++|++++|.++.++.   .+..+++|+.|++++|.++.      +++ .+
T Consensus        38 l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~------l~~l~~  111 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS------ERELDK  111 (162)
T ss_dssp             TTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC------GGGHHH
T ss_pred             hhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc------chhhhh
Confidence            344444555555555444554455678888999998888877643   36788889999999988883      333 22


Q ss_pred             cCCccCcEEEeecCCh
Q 047084           93 GSLTNLQKLCIIEADS  108 (437)
Q Consensus        93 ~~l~~L~~L~l~~n~~  108 (437)
                      ....+|+.|++++|+.
T Consensus       112 l~~~~L~~L~L~~Npl  127 (162)
T d1koha1         112 IKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HTTCCCSSCCCTTSTT
T ss_pred             hhccccceeecCCCCc
Confidence            3344688888888863

>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: Nucleic acid binding protein p14
species: Mouse mammary tumor virus [TaxId: 11757]

Probab=97.49  E-value=2e-05  Score=39.67  Aligned_cols=20  Identities=35%  Similarity=0.901  Sum_probs=17.9

Q ss_pred             cccccccccccccCCCCCCc
Q 047084          374 PIICYQCGKYGHNSIVCQSK  393 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~~  393 (437)
                      .+.||+||+-||..+.|+..
T Consensus         2 gpvcfscgktghikkdck~e   21 (26)
T d1dsqa_           2 GPVCFSCGKTGHIKRDCKEE   21 (26)
T ss_dssp             CCBCTTTCCBSSCTTTTTCC
T ss_pred             CCEEEecCCcccchhhhhhh
Confidence            46899999999999999864

>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=97.49  E-value=2.2e-05  Score=41.54  Aligned_cols=25  Identities=32%  Similarity=0.786  Sum_probs=21.2

Q ss_pred             cCcccccccccccccCCCCCCcccc
Q 047084          372 GLPIICYQCGKYGHNSIVCQSKQKM  396 (437)
Q Consensus       372 ~lp~~C~~cg~~gH~~~~C~~~~~~  396 (437)
                      +-...||.||+.||..+.|..|.+.
T Consensus         4 r~~ikCfNCGkeGH~ar~CrAPRkk   28 (29)
T d1nc8a_           4 RKVIRCWNCGKEGHSARQCRAPRRQ   28 (29)
T ss_dssp             CCCCBCTTTSCBSSCGGGCCSSSSC
T ss_pred             cceeEeecCCccchhhhhccCcccC
Confidence            3467899999999999999987653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.44  E-value=2.4e-05  Score=64.41  Aligned_cols=121  Identities=16%  Similarity=0.126  Sum_probs=75.8

Q ss_pred             cCCCCCcEEEeecc-cCc-----ccChhhhcccCCCEEEccCCcccc-----cchhhcCCcCCcEEeceeeccccccccc
Q 047084           18 GNLFNLHYLSVKNT-KVK-----IIPKSIGNLLGLETLDLKNTLVRE-----LPVEIRNLKRLRYLMVYQYNYTAGFAAA   86 (437)
Q Consensus        18 ~~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~n~l~~~~~~~   86 (437)
                      .+.+.|+.|+|+++ .++     .+-..+...++|++|++++|.++.     +...+...+.|++|++++|.++... ..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g-~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH-HH
Confidence            34678999999874 464     133456667789999999776653     3334667788999999999887432 12


Q ss_pred             cccccccCCccCcEEEeecCChHhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcC
Q 047084           87 KLHEGFGSLTNLQKLCIIEADSEALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEV  147 (437)
Q Consensus        87 ~lp~~~~~l~~L~~L~l~~n~~~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l  147 (437)
                      .+-..+...+.|++|++++|....+..        .....+...+..-++|+.|+++.+..
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~--------~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGN--------QVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCH--------HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccH--------HHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            344556677788999888775221110        00011223445567788888766544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.26  E-value=8.7e-05  Score=60.86  Aligned_cols=109  Identities=15%  Similarity=0.094  Sum_probs=77.4

Q ss_pred             CEEEecCC-CCCc-----CCccccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCcccc-----cchhhc
Q 047084            1 KVLDLEDA-PVDY-----LPEGVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVRE-----LPVEIR   64 (437)
Q Consensus         1 ~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~   64 (437)
                      +.|+|+++ .++.     +-..+....+|+.|+|++|.++     .+...+...+.|++|++++|.++.     +-..+.
T Consensus        18 ~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~   97 (167)
T d1pgva_          18 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL   97 (167)
T ss_dssp             CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred             cEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHH
Confidence            47889874 3532     2224567788999999999985     233456678899999999887774     233467


Q ss_pred             CCcCCcEEeceeecccccc--ccccccccccCCccCcEEEeecCChH
Q 047084           65 NLKRLRYLMVYQYNYTAGF--AAAKLHEGFGSLTNLQKLCIIEADSE  109 (437)
Q Consensus        65 ~L~~L~~L~l~~n~l~~~~--~~~~lp~~~~~l~~L~~L~l~~n~~~  109 (437)
                      .-++|++|++++|.+....  ....+...+..-++|+.|+++.+.+.
T Consensus        98 ~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_          98 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             hCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCch
Confidence            7789999999998765321  01235556666789999999887743

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.79  E-value=0.00081  Score=54.62  Aligned_cols=117  Identities=15%  Similarity=0.090  Sum_probs=75.4

Q ss_pred             cCCCCCcEEEeec-ccCc-----ccChhhhcccCCCEEEccCCcccc-----cchhhcCCcCCcEEeceeeccccccccc
Q 047084           18 GNLFNLHYLSVKN-TKVK-----IIPKSIGNLLGLETLDLKNTLVRE-----LPVEIRNLKRLRYLMVYQYNYTAGFAAA   86 (437)
Q Consensus        18 ~~l~~L~~L~L~~-n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~n~l~~~~~~~   86 (437)
                      .+.+.|+.|+|++ +.++     .+-.++...++|++|++++|.++.     +-..+...++++.++++.|.++... ..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g-~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-IL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-HH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh-HH
Confidence            4668899999987 4564     233455677889999999777653     2233667788999999988876332 12


Q ss_pred             cccccccCCccCcEEEee--cCCh--HhHhhccchHhcccccccCCchhhcCCCCCeEEeeCCcCC
Q 047084           87 KLHEGFGSLTNLQKLCII--EADS--EALKELMKLRQLRNLLKTIPPPLAADRSTKKARFRSHEVD  148 (437)
Q Consensus        87 ~lp~~~~~l~~L~~L~l~--~n~~--~~~~~L~~L~~l~n~~~~ip~~~~~l~~L~~L~l~~N~l~  148 (437)
                      .+...+...++|+.++|+  .|..  ....             .+...+...++|++|+++.+...
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~-------------~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEM-------------EIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHH-------------HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHH-------------HHHHHHHhCCCcCEEeCcCCCCc
Confidence            344556777788876665  3332  1111             12234556678888988776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.44  E-value=0.00046  Score=56.20  Aligned_cols=108  Identities=11%  Similarity=0.118  Sum_probs=74.8

Q ss_pred             CEEEecC-CCCCc-----CCccccCCCCCcEEEeecccCc-----ccChhhhcccCCCEEEccCCcccc-----cchhhc
Q 047084            1 KVLDLED-APVDY-----LPEGVGNLFNLHYLSVKNTKVK-----IIPKSIGNLLGLETLDLKNTLVRE-----LPVEIR   64 (437)
Q Consensus         1 ~~L~L~~-n~l~~-----lp~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~l~~~~~~~-----lp~~~~   64 (437)
                      ++|+|++ +.++.     +-..+...++|+.|+|++|.++     .+-..+...++++.++++++.++.     +-..+.
T Consensus        20 ~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~   99 (166)
T d1io0a_          20 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ   99 (166)
T ss_dssp             CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred             cEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHH
Confidence            4678876 34531     2223567899999999999985     233456678999999999777653     334577


Q ss_pred             CCcCCcEEec--eeeccccccccccccccccCCccCcEEEeecCChH
Q 047084           65 NLKRLRYLMV--YQYNYTAGFAAAKLHEGFGSLTNLQKLCIIEADSE  109 (437)
Q Consensus        65 ~L~~L~~L~l--~~n~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~  109 (437)
                      ..++|+.++|  +.|.+.... ...+...+...+.|+.|+++.+...
T Consensus       100 ~~~~L~~l~L~l~~n~i~~~~-~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         100 SNTSLIELRIDNQSQPLGNNV-EMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             GCSSCCEEECCCCSSCCCHHH-HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             hCccccEEeeccCCCcCcHHH-HHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            8899998665  466665211 1245566778889999999988743

>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 1, different isolates [TaxId: 11676]

Probab=95.50  E-value=0.0027  Score=38.26  Aligned_cols=17  Identities=41%  Similarity=1.155  Sum_probs=8.4

Q ss_pred             ccccccccccCCCCCCc
Q 047084          377 CYQCGKYGHNSIVCQSK  393 (437)
Q Consensus       377 C~~cg~~gH~~~~C~~~  393 (437)
                      |+.||..||...+||.+
T Consensus         4 C~~Cg~~GH~~~~Cp~~   20 (42)
T d2exfa1           4 CFNCGKEGHTARNCRAP   20 (42)
T ss_dssp             CTTTCCSSSCTTTCSSC
T ss_pred             cccCCCcCcCcccCcCC
Confidence            44555555555555443

>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 1, different isolates [TaxId: 11676]

Probab=94.48  E-value=0.0079  Score=36.09  Aligned_cols=21  Identities=38%  Similarity=0.833  Sum_probs=18.6

Q ss_pred             cccccccccccccCCCCCCcc
Q 047084          374 PIICYQCGKYGHNSIVCQSKQ  394 (437)
Q Consensus       374 p~~C~~cg~~gH~~~~C~~~~  394 (437)
                      ...|+.||..||....||.++
T Consensus        22 ~~~C~~Cg~~GH~~~~Cp~rq   42 (42)
T d2exfa1          22 KKGCWKCGKEGHQMKDCTERQ   42 (42)
T ss_dssp             CSSCSSSCCSSSCTTTCCSSC
T ss_pred             cCccccCCCCCeecccCCCCC
Confidence            358999999999999999764

>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: Zinc finger protein ncp10
species: Moloney murine leukemia virus, MoMLV [TaxId: 11801]

Probab=90.64  E-value=0.068  Score=30.20  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.0

Q ss_pred             ccccccccccccCCCCCCcccc
Q 047084          375 IICYQCGKYGHNSIVCQSKQKM  396 (437)
Q Consensus       375 ~~C~~cg~~gH~~~~C~~~~~~  396 (437)
                      .-|..|..-||-.+.||.+.+.
T Consensus        11 DQCAyCke~GHW~~dCPkkprg   32 (40)
T d1a6bb_          11 DQCAYCKEKGHWAKDCPKKPRG   32 (40)
T ss_dssp             SSCSSSCCTTCCTTSCSSSCCC
T ss_pred             hhhHHHhhcCchhhhCccCCCC
Confidence            4699999999999999986543